Psyllid ID: psy2166
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 805 | 2.2.26 [Sep-21-2011] | |||||||
| Q9I7U4 | 18141 | Titin OS=Drosophila melan | yes | N/A | 0.352 | 0.015 | 0.691 | 0.0 | |
| Q8WZ42 | 34350 | Titin OS=Homo sapiens GN= | no | N/A | 0.739 | 0.017 | 0.244 | 6e-37 | |
| A2ASS6 | 35213 | Titin OS=Mus musculus GN= | no | N/A | 0.761 | 0.017 | 0.237 | 6e-34 | |
| O01761 | 8081 | Muscle M-line assembly pr | no | N/A | 0.766 | 0.076 | 0.249 | 2e-29 | |
| Q96RW7 | 5635 | Hemicentin-1 OS=Homo sapi | no | N/A | 0.596 | 0.085 | 0.231 | 1e-17 | |
| A2AAJ9 | 8891 | Obscurin OS=Mus musculus | no | N/A | 0.739 | 0.066 | 0.199 | 3e-17 | |
| Q23551 | 7158 | Twitchin OS=Caenorhabditi | no | N/A | 0.545 | 0.061 | 0.211 | 9e-17 | |
| Q6PDN3 | 1941 | Myosin light chain kinase | no | N/A | 0.673 | 0.279 | 0.224 | 1e-15 | |
| A2AJ76 | 5100 | Hemicentin-2 OS=Mus muscu | no | N/A | 0.623 | 0.098 | 0.217 | 7e-15 | |
| P11799 | 1906 | Myosin light chain kinase | no | N/A | 0.413 | 0.174 | 0.251 | 2e-14 |
| >sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/474 (69%), Positives = 388/474 (81%)
Query: 3 KATNSKGSATTSGTLKCLGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEET 62
KATNSKGSATTSGTLKC G K ++L+TQHP G AGLE VQE E LA +Y + + PE
Sbjct: 2829 KATNSKGSATTSGTLKCTGGKTMFLDTQHPQGEAGLEAVQETEEELANRYTSKTTKPETQ 2888
Query: 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
+ PV+ PL+ EF L EAQP+HLEA VEPK DPNL IEW FNGK L GSRFK T++FG
Sbjct: 2889 YPPPVWTKPLQAEFHLSEAQPIHLEANVEPKEDPNLFIEWYFNGKMLNHGSRFKMTSEFG 2948
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQD 182
FVT+D+ EVY RDQGIYTC+A+N AGE FTSTTI+CS+KE++IE TQHPKG EGLE+IQD
Sbjct: 2949 FVTMDMIEVYARDQGIYTCKAYNKAGEAFTSTTIFCSSKENIIESTQHPKGAEGLEQIQD 3008
Query: 183 LEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 242
LE+SLR+ + + G PP+FT+EF +++++ EGE+AHFEA+LIPVGDQ+M +E+ YN
Sbjct: 3009 LEDSLRKDGSKPEQPDLGIPPRFTTEFVNIADIGEGELAHFEANLIPVGDQSMVIEWFYN 3068
Query: 243 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQ 302
GK +EASHR+RT++AFG V LE+LGTKIEDTG YTCRATNK G AEIS NLECVDK +GQ
Sbjct: 3069 GKVLEASHRVRTIYAFGTVALEVLGTKIEDTGTYTCRATNKHGTAEISCNLECVDKPRGQ 3128
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P+FTSHI+ LEGLKDG SAHFECTL PVNDP+LKVEW+HNGK + H NR+K VSDFG+V
Sbjct: 3129 KPRFTSHIQPLEGLKDGQSAHFECTLIPVNDPDLKVEWYHNGKLMRHSNRIKTVSDFGYV 3188
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQ 422
V+DI+Y+Q HDSGEYVCRAWNKYGEDFTR T+ C G+GGV+ DSLQP+SL RIRELE Q
Sbjct: 3189 VLDISYLQDHDSGEYVCRAWNKYGEDFTRTTLNCGGRGGVFYDSLQPDSLQRIRELECPQ 3248
Query: 423 GQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSN 476
GQQ A VAE PKFITQI DVT+L EGQSAHFEARLTP+TDPDLV E + N
Sbjct: 3249 GQQADTSAPLVAEPPKFITQIVDVTKLVEGQSAHFEARLTPITDPDLVVEWYFN 3302
|
Key component in the assembly and functioning of adult and embryonic striated muscles and muscle tendons. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase. Drosophila melanogaster (taxid: 7227) |
| >sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4 | Back alignment and function description |
|---|
Score = 156 bits (395), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 178/727 (24%), Positives = 284/727 (39%), Gaps = 132/727 (18%)
Query: 99 KIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRD-QGIYTCRAWNLAGETFTSTTIY 157
++ W F K + +FK D TL + +V D QG Y C A N +G+T TS +
Sbjct: 4317 EVNWYFENKLVPSDEKFKCLQDQNTYTLVIDKVNTEDHQGEYVCEALNDSGKTATSAKLT 4376
Query: 158 CSTKES-LIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLS 216
+ + +I+R KI+ LE +L G +FT E Q N+
Sbjct: 4377 VVKRAAPVIKR-----------KIEPLEVAL------------GHLAKFTCEIQSAPNVR 4413
Query: 217 EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVY 276
++ G+ I S + + + LEIL T++ D G Y
Sbjct: 4414 --------------------FQWFKAGREIYESDKCSIRSSKYISSLEILRTQVVDCGEY 4453
Query: 277 TCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPEL 336
TC+A+N++G + L ++ PP F S KSL G +A F CT+T P +
Sbjct: 4454 TCKASNEYGSVSCTATLTV---TEAYPPTFLSRPKSLTTFV-GKAAKFICTVT--GTPVI 4507
Query: 337 KVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKC 396
+ W +G + ++ +++++ + D G Y C+A NK+G D +A +
Sbjct: 4508 ETIWQKDGAALSPSPNWRISDAENKHILELSNLTIQDRGVYSCKASNKFGADICQAELII 4567
Query: 397 FGKGGVYLDSLQPESLARIRELENAQG--QQPVAQAAPVAEAPKF-ITQISDVTQLKEGQ 453
K I+ELE Q + V V E K +T D +L G+
Sbjct: 4568 IDKPHF------------IKELEPVQSAINKKVHLECQVDEDRKVTVTWSKDGQKLPPGK 4615
Query: 454 S---------AHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISD 504
A E L + D SN G + V E P F+ ++
Sbjct: 4616 DYKICFEDKIATLEIPLAKLKDSGTYVCTASN---EAGSSSCSATVTVREPPSFVKKVDP 4672
Query: 505 VTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 564
+ G+SA +L P + V WF N K+L + R + ILDI E
Sbjct: 4673 SYLMLPGESARLHCKLK--GSPVIQVTWFKNNKELSESNTVRMYFVNSEAILDITDVKVE 4730
Query: 565 NSGVYECRATNKYGSDVTKASL---------------KCVSKTNLILESQLP-----EVE 604
+SG Y C A N GSD + V TN +L+ ++ E+
Sbjct: 4731 DSGSYSCEAVNDVGSDSCSTEIVIKEPPSFIKTLEPADIVRGTNALLQCEVSGTGPFEIS 4790
Query: 605 WFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSK 664
WF + K++ +YR F +V L+I + G YEC N+ G KC
Sbjct: 4791 WFKDKKQIRSSKKYRLFSQKSLVCLEIFSFNSADVGEYECVVANEVG--------KCGCM 4842
Query: 665 TNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM 724
+L+ PP F + L L G+ +A++ G + +
Sbjct: 4843 ATHLLK-------------------EPPTFVKKVDDLIALG-GQTVTLQAAV--RGSEPI 4880
Query: 725 TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784
+V ++ + I +I+ + G+ VL I +I G YTC A N+ G ++ SV E
Sbjct: 4881 SVTWMKGQEVIREDGKIKMSFSNGVAVLIIPDVQISFGGKYTCLAENEAG-SQTSVG-EL 4938
Query: 785 VVWSPSQ 791
+V P++
Sbjct: 4939 IVKEPAK 4945
|
Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1 | Back alignment and function description |
|---|
Score = 146 bits (369), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 176/742 (23%), Positives = 297/742 (40%), Gaps = 129/742 (17%)
Query: 80 EAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIY 139
E +HL + + + + W F G + +FK + TL + V D+G Y
Sbjct: 4264 EGDTVHLTSSISNAKE----VHWYFKGNLVPSDGKFKCLKEQNAYTLVIEAVKTEDEGEY 4319
Query: 140 TCRAWNLAGETFTSTTIYCSTKES-LIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSE 198
C A N +G+ TS + + + +I+R +I+ LE +L
Sbjct: 4320 VCEASNDSGKAKTSAKLTVGERAAPVIKR-----------RIEPLEVAL----------- 4357
Query: 199 DGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF 258
G +FT E Q N+ ++ G+ I S + +
Sbjct: 4358 -GHLAKFTCEIQGAPNVR--------------------FQWFKAGREIYESDKCSIRSSN 4396
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKD 318
+ LEIL T++ D G YTC+A+N++G + L ++ PP F S K+L
Sbjct: 4397 YVSSLEILRTQVVDCGEYTCKASNEYGSVSCTATLTV---TEAYPPTFLSRPKALTTFV- 4452
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
G +A F CT++ P +++ W +G + ++ ++++ + D G Y
Sbjct: 4453 GKAAKFLCTVS--GTPVIEIIWQKDGAALSPSPDCRVTDADNKHSLELSNLTVQDRGIYS 4510
Query: 379 CRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQG--QQPVAQAAPVAEA 436
C+A NK+G D +A + K I+ELE Q + + V E
Sbjct: 4511 CKASNKFGADICQAELTIIDKPHF------------IKELEAVQSAINKKIHLECQVDED 4558
Query: 437 PKF-ITQISDVTQLKEGQS--AHFEARLTPVTDPDLVCELFSNF----FPSQGQQPVAQA 489
K IT D +L G+ +FE ++ + P + + G + A
Sbjct: 4559 RKVTITWSKDGQKLPAGKDYKIYFEDKIASLEIPLAKLKDSGTYTCTASNEAGSSSSSAA 4618
Query: 490 APVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFH 549
V E P F+ ++ + G+SA +L P + V WF N K+L + R
Sbjct: 4619 VAVREPPSFVKKVDPSYLMLPGESARLHCKLK--GSPVIQVTWFKNNKELSESNTVRMSF 4676
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSD--VTKASLK-------------CVSKTNL 594
ILDI ++SG Y C ATN GSD T+ +K V N
Sbjct: 4677 VNSEAILDITDVKVDDSGTYSCEATNDVGSDSCSTEVVIKEPPSFIKTLEPADIVRGANA 4736
Query: 595 ILESQLP-----EVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNK 649
+L+ ++ EV WF + K++ +YR F V L+I + G YEC N+
Sbjct: 4737 LLQCEIAGTGPFEVNWFKDKKQIRSSKKYRLFTQKTFVYLEISSFNSADVGDYECVVANE 4796
Query: 650 YGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEI 709
G CV+ T+L+ E PP F + + L+ G+
Sbjct: 4797 VG------KCGCVA-THLLKE--------------------PPTFVKKVDDFTALA-GQT 4828
Query: 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769
+A++ G + ++V ++ + I+ +I+ + G+ VL I +I G YTC A
Sbjct: 4829 VTLQAAV--RGSEPISVMWMKGQEVIKEDGKIKMSFSNGVAVLTIPDVQISLGGKYTCLA 4886
Query: 770 TNKWGQAEISVNLECVVWSPSQ 791
N+ G ++ SV E +V P++
Sbjct: 4887 ENEAG-SQTSVG-ELIVKEPAK 4906
|
Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 OS=Caenorhabditis elegans GN=unc-89 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 185/741 (24%), Positives = 293/741 (39%), Gaps = 124/741 (16%)
Query: 100 IEWIFNGKPL-ELGS-RFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
+EW + KP+ E G+ K + G TL + + D G YT +A N AG
Sbjct: 3219 VEWFKDDKPVSEDGNHEMKKNPETGVFTLVVKQAATTDAGKYTAKASNPAG--------- 3269
Query: 158 CSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 217
T ES E E Q LE+ P F E + +
Sbjct: 3270 --TAESSAE----------AEVTQSLEK-----------------PTFVRELV-TTEVKI 3299
Query: 218 GEIAHFEASLIPVGDQTMTVEFLYNGKPI--EASHRIRTVHAFGMVVLEILGTKIEDTGV 275
E A ++ V D + VE+L +G+P+ ++SH I V G + I ++ED+G
Sbjct: 3300 NETATLSVTVKGVPDPS--VEWLKDGQPVQTDSSHVIAKVEGSGSYSITIKDARLEDSGK 3357
Query: 276 YTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE 335
Y CRATN G+A+ N V PP+F + LE +K+ +S + V PE
Sbjct: 3358 YACRATNPAGEAKTEANFAVVKNL--VPPEFVEKLSPLE-VKEKESTTLSVKV--VGTPE 3412
Query: 336 LKVEWFHNGKPIFHKNR--VKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRAT 393
VEWF + PI N ++ + G + I + D G Y CRA N+ GE T A
Sbjct: 3413 PSVEWFKDDTPISIDNVHVIQKQTAVGSFSLTINDARQGDVGIYSCRARNEAGEALTTAN 3472
Query: 394 IKCFGKGGVYLDSLQPESLARIRELENAQGQQ----------PVAQAAPVAEAPKFITQI 443
G+ DS+ PE ++R LE + + PV +
Sbjct: 3473 F------GIIRDSIPPEFTQKLRPLEVREQETLDLKVTVIGTPVPNVEWFKDDKPINIDN 3526
Query: 444 SDVTQLKEGQSAHFEARLTPVTDPDL---VCELFSNFFPSQGQQPVAQAAPVAEAPKFIT 500
S + EG S H + D+ C+ + ++ +A + EAP F+
Sbjct: 3527 SHIFAKDEG-SGHHTLTIKQARGEDVGVYTCKATNEAGEAKTTANMAVQEEI-EAPLFVQ 3584
Query: 501 QISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGK--KLPHGHRYRTFHDFGIVILDI 558
+ ++++G+ A R+ +P+ V+WF +G + + H + G L I
Sbjct: 3585 GLKPY-EVEQGKPAELVVRVEGKPEPE--VKWFKDGVPIAIDNQHVIEKKGENGSHTLVI 3641
Query: 559 LYCYEENSGVYECRATNKYGSDVTKASLK--------------------------CVSKT 592
+ G Y C+ATNK G D T LK V
Sbjct: 3642 KDTNNADFGKYTCQATNKAGKDETVGELKIPKYSFEKQTAEEVKPLFIEPLKETFAVEGD 3701
Query: 593 NLILESQL-----PEVEWFYNGKKLPHG-HRYRTFHDFGIVILDILYCYEENSGVYECRA 646
++LE ++ P++++F N + + G H + G + L I +E+ G Y C A
Sbjct: 3702 TVVLECKVNKESHPQIKFFKNDQPVEIGQHMQLEVLEDGNIKLTIQNAKKEDVGAYRCEA 3761
Query: 647 TNKYGSDVTKASLK----CVSKTNLILES-QLPELRR----QPAGVPDSEDGR-PPQFTS 696
N G T A LK + ++ ES QL E+ + ++ GR P+F
Sbjct: 3762 VNVAGKANTNADLKIQFAAKVEEHVTDESGQLEEIGQFETVGDTASSKTDTGRGAPEFV- 3820
Query: 697 EFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA-FGMVVLEIL 755
E ++E + A + + G+ +++ GK +E S R+R H G + L
Sbjct: 3821 ELLRSCTVTEKQQAILKCKV--KGEPRPKIKWTKEGKEVEMSARVRAEHKDDGTLTLTFD 3878
Query: 756 GTKIEDTGVYTCRATNKWGQA 776
D G Y C A N++G A
Sbjct: 3879 NVTQADAGEYRCEAENEYGSA 3899
|
Structural component of the muscle M-line. Myofilament lattice assembly begins with positional cues laid down in the basement membrane and muscle cell membrane. UNC-89 responds to these signals, localizes, and then participates in assembling an M-line. Caenorhabditis elegans (taxid: 6239) |
| >sp|Q96RW7|HMCN1_HUMAN Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 134/578 (23%), Positives = 228/578 (39%), Gaps = 98/578 (16%)
Query: 237 VEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 296
+ +L N +PI+ + T+ G L+I+ K+ D G YTC A N+ G+++ +L
Sbjct: 2996 LSWLKNEQPIKLN--TNTLIVPGGRTLQIIRAKVSDGGEYTCIAINQAGESKKKFSLTVY 3053
Query: 297 DKSKGQPPKFTSHIK---SLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRV 353
PP H S+ +++G S EC V P + W+ NG+ I V
Sbjct: 3054 -----VPPSIKDHDSESLSVVNVREGTSVSLECESNAVPPP--VITWYKNGRMITESTHV 3106
Query: 354 KMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLA 413
++++D + I + D+G+YVCRA N G D + + + PE
Sbjct: 3107 EILADGQM--LHIKKAEVSDTGQYVCRAINVAGRDDKNFHLNVYVPPSIE----GPEREV 3160
Query: 414 RIRELEN-------AQGQQPVAQA-----APVAEAPKFITQI-SDVTQLKEGQSAHFEAR 460
+ + N A G P A + + +I S ++L+ +S H ++
Sbjct: 3161 IVETISNPVTLTCDATGIPPPTIAWLKNHKRIENSDSLEVRILSGGSKLQIARSQHSDSG 3220
Query: 461 LTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARL 520
++ + +F S Q P + A AE P SDV+ L G++
Sbjct: 3221 NYTCIASNMEGKAQKYYFLSI-QVPPSVAG--AEIP------SDVSVLL-GENVELVCNA 3270
Query: 521 TPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD 580
+ P +++W +GK + G R L+I ++G Y C ATN G +
Sbjct: 3271 NGIPTP--LIQWLKDGKPIASGETERIRVSANGSTLNIYGALTSDTGKYTCVATNPAGEE 3328
Query: 581 ---------VTKA---------SLKCVSKTNLILESQL-----PEVEWFYNGKKLPHGHR 617
VT L + T++ +E + P++ W NG LP
Sbjct: 3329 DRIFNLNVYVTPTIRGNKDEAEKLMTLVDTSINIECRATGTPPPQINWLKNGLPLPLSSH 3388
Query: 618 YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELR 677
R ++ I+ + VY C A+N+ G D +L+ + N+
Sbjct: 3389 IRLLAAGQVI--RIVRAQVSDVAVYTCVASNRAGVDNKHYNLQVFAPPNM---------- 3436
Query: 678 RQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEA 737
D+ G T E L S + I G ++ +L +G+P+
Sbjct: 3437 -------DNSMG-----TEEITVLKGSST------SMACITDGTPAPSMAWLRDGQPLGL 3478
Query: 738 SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775
+ TV GM VL++L + ED+G YTC A+N+ G+
Sbjct: 3479 DAHL-TVSTHGM-VLQLLKAETEDSGKYTCIASNEAGE 3514
|
Homo sapiens (taxid: 9606) |
| >sp|A2AAJ9|OBSCN_MOUSE Obscurin OS=Mus musculus GN=Obscn PE=2 SV=2 | Back alignment and function description |
|---|
Score = 90.9 bits (224), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 152/761 (19%), Positives = 252/761 (33%), Gaps = 166/761 (21%)
Query: 100 IEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCS 159
+EW + L G R+ D L + ++ D G Y+C + G+ TS +
Sbjct: 4335 VEWRKGSETLRDGGRYSLRQDGAVCELQIHDLDVEDAGQYSC----VCGQEKTSAVL--- 4387
Query: 160 TKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGE 219
+ D PP+FT + +EG
Sbjct: 4388 -------------------------------------TVDALPPKFTEGLKK-EEATEGT 4409
Query: 220 IAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 279
+ + + TVE+ K + R M L+I G +ED G Y+C
Sbjct: 4410 MVTLRCQM----SKEATVEWRKGAKTLSDGGRYSLRQDGAMCELQICGLAVEDAGEYSCV 4465
Query: 280 ATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVE 339
+ A +SV K PP+F ++S E +G A C ++ VE
Sbjct: 4466 CGQEKTSATLSV--------KALPPRFIEDLRSQEA-TEGTMATLRCQMSKAA----PVE 4512
Query: 340 WFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGK 399
W + + +R + D + I + D+GEY+C G++ T AT+
Sbjct: 4513 WRKGSETLRDGDRYSLRQDGAVCELQIRDLAVEDAGEYLCVC----GQEKTSATLS---- 4564
Query: 400 GGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEA 459
+ +L P + +R E +G + AP + S + + S +
Sbjct: 4565 ----VKALPPRFIEDLRSQEATEGTMATLRCQMSKAAPVEWRKGSKTLRDGDRYSLRQDG 4620
Query: 460 RLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPV-AEAPKFITQISDVTQLKEGQSAHFEA 518
+ + DL E ++ GQ+ + V A P+FI + + +EG A
Sbjct: 4621 AMCELQICDLAVEDTGDYSCVCGQEKTSATLSVKALPPRFIEDLRS-QEAREGTVATLRC 4679
Query: 519 RLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG 578
R++ VEW + L G RY + + L I E++ Y C G
Sbjct: 4680 RMSKAAP----VEWRKGSETLKDGDRYSLRQEGNLCELQIRDLAVEDTEEYSCVC----G 4731
Query: 579 SDVTKASLKCVSKTNLILE-------------------SQLPEVEWFYNGKKLPHGHRYR 619
+ T A+L + +E S+ V W + L +G RY
Sbjct: 4732 QEKTSATLSVKALPAKFIEDLRSQEAPESSTVTLRCKLSKKASVVWKKGSETLRNGARYS 4791
Query: 620 TFHDFGIVILDILYCYEENSGVYECRA----------------------TNKYGSDVTKA 657
D + L+I E++G Y C N + + A
Sbjct: 4792 LRQDGAVCELEIRDLTVEDTGEYSCTCGQERTSATLSIMAPQVVFQQPLQNLQAEEGSMA 4851
Query: 658 SLKC-------------------------VSKTNLILESQLPELRRQPAGVPDSEDGR-- 690
SL+C + + E L +LRR+ AG G
Sbjct: 4852 SLRCELSVPNAAMVWSKGGLELQGDTRREARQQGCVAELLLRDLRREDAGEYSCTCGSQT 4911
Query: 691 ----------PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR 740
P +F E Q ++ EG A L + ++VE+ + +
Sbjct: 4912 TSATLMVTAAPVRFLRELQA-QDVDEGATARLRCEL---SREAVSVEWRKGSLQLFPCAK 4967
Query: 741 IRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781
+ V L + G + ED G YTC A + A +SV
Sbjct: 4968 YQMVQEGTTAELLVHGVEQEDAGEYTCDAGHTQSIARLSVR 5008
|
Involved in myofibrillogenesis. Seems to be involved in assembly of myosin into sarcomeric A bands in striated muscle. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q23551|UNC22_CAEEL Twitchin OS=Caenorhabditis elegans GN=unc-22 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 89.7 bits (221), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 121/573 (21%), Positives = 214/573 (37%), Gaps = 134/573 (23%)
Query: 258 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKG------QPPKFTSHIK 311
+G+ + + G +D G YT RA N +G E V L S+ +P K
Sbjct: 6640 YGLTINRVKG---DDKGEYTVRAKNSYGTKEEIVFLNVTRHSEPLKFEPLEPMKKAPSPP 6696
Query: 312 SLEGLKDGDSAHF--------------ECTLTPV--NDPELKVEWFHNGKPIFHKNRVKM 355
+E K+ SA F +C LT +P +EW +G P+ ++RV++
Sbjct: 6697 RVEEFKERRSAPFFTFHLRNRLIQKNHQCKLTCSLQGNPNPTIEWMKDGHPV-DEDRVQV 6755
Query: 356 VSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARI 415
G ++I + D+G Y A N G D + + KGG E + R+
Sbjct: 6756 SFRSGVCSLEIFNARVDDAGTYTVTATNDLGVDVSECVLTVQTKGG--------EPIPRV 6807
Query: 416 RELENAQGQQPVAQAAPVAEAPKFI-----TQISDVTQLKEGQSAHFEARLTPVTDPDLV 470
+ ++ V + + + I DV+ + + ++T
Sbjct: 6808 SSFRPRRAYDTLSTGTDVERSHSYADMRRRSLIRDVSPDVRSAADDLKTKIT-------- 6859
Query: 471 CELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVV 530
E P F Q+SD ++ + G SA F A ++ P+ ++
Sbjct: 6860 ----------------------NELPSFTAQLSD-SETEVGGSAEFSAAVS--GQPEPLI 6894
Query: 531 EWFYNGKKLPHGH-RYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589
EW +NG+++ R+R + G L I + + G Y CRA+N G + T+A+L
Sbjct: 6895 EWLHNGERISESDSRFRASYVAGKATLRISDAKKSDEGQYLCRASNSAGQEQTRATLTVK 6954
Query: 590 SKTNLI-------LESQL---------------------------PEVEWFYNGKKLPHG 615
L+ +ES+L EV W NG++L +G
Sbjct: 6955 GDQPLLNGHAGQAVESELRVTKHLGGEIVNNGESVTFEARVQGTPEEVLWMRNGQELTNG 7014
Query: 616 HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPE 675
+ D + I ++G Y+ +K G+++ + V E P
Sbjct: 7015 DKTSISQDGETLSFTINSADASDAGHYQLEVRSK-GTNLVSVASLVVVG-----EKADPP 7068
Query: 676 LRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI 735
+ R P+ V + G FT EF+++ L TV++ + I
Sbjct: 7069 VTRLPSSV-SAPLGGSTAFTIEFENVEGL--------------------TVQWFRGSEKI 7107
Query: 736 EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 768
E + R+++V L+I + +D G+Y +
Sbjct: 7108 EKNERVKSVKTGNTFKLDIKNVEQDDDGIYVAK 7140
|
Regulator of muscle contraction and relaxation. Senses mechanical strain that occurs during muscle activity by unfolding in clearly resolvable steps at differing forces. Caenorhabditis elegans (taxid: 6239) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q6PDN3|MYLK_MOUSE Myosin light chain kinase, smooth muscle OS=Mus musculus GN=Mylk PE=1 SV=3 | Back alignment and function description |
|---|
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 153/681 (22%), Positives = 229/681 (33%), Gaps = 139/681 (20%)
Query: 215 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR-IRTVHAFGMVVLEILGTKIEDT 273
+ EG A FE + G V + G+ I R + G L I + ED
Sbjct: 44 VKEGATAKFEGRV--RGYPEPQVTWHRKGQAITNGGRFLLDCGVRGTFSLVIHTVREEDK 101
Query: 274 GVYTCRATNKWGQAEISVNLEC------------VDKSKG------------QPPKFTSH 309
G YTC A+N G +++V L + K+ G PPKF +
Sbjct: 102 GKYTCEASNGSGARQVTVELTVEGNSMKKRDQPVLSKASGFPGETRPSIWGECPPKFATK 161
Query: 310 IKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYV 369
+ +K+G F C +T P +V W P+ RV M G +++I V
Sbjct: 162 L-GRAVVKEGQMWRFSCKIT--GRPPPQVTWLKGNVPLQPSARVSMSEKNGMQILEIRGV 218
Query: 370 QSHDSGEYVCRAWNKYGEDFTRATIKCFG-----------------------KGGVYLDS 406
D G Y C N G+ A + G GV D
Sbjct: 219 TRDDLGVYTCMVVNGSGKASMSAELSIPGLDNASRLAVRGTKAPSPDIRKEVTNGVSKD- 277
Query: 407 LQPESLARIRELENAQGQQPVAQA------APVAEAPKF------------ITQISDVTQ 448
PE++A + + Q A+A +P PK I Q S T
Sbjct: 278 --PETVAESKNCPSPQRSGSSARATNSHLKSPQEPKPKLCEDAPRKVPQSSILQKSTSTI 335
Query: 449 LKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEA------------- 495
+ EAR+ + + S P Q P Q++
Sbjct: 336 TLQALKVQPEARVPAIGSFSPGEDRKSLAAPQQATLPTRQSSLGGSVGNKFVTGNIPRES 395
Query: 496 ------PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFH 549
P+F +Q ++ EGQ+ F ++ + PD V WF G + +
Sbjct: 396 QRESTFPRFESQ-PQSQEVTEGQTVKFICEVSGIPKPD--VGWFLEGIPVRRREGITEVY 452
Query: 550 DFGIV-ILDILYCYEENSGVYECRATNKYGS--------------DVTKASLKCVSKTNL 594
+ G+ L +L +S Y C A+N G T S V K ++
Sbjct: 453 EDGVSHHLCLLRARTRDSRKYSCTASNSLGQVSCSWSLLVDRPNLAQTAPSFSSVLKDSV 512
Query: 595 ILESQ------------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVY 642
++E Q P V W NG+ + H + + G+ L I E+ G Y
Sbjct: 513 VIEGQDFVLRCSVQGTPAPRVTWLLNGQPIQFAH---SICEAGVAELHIQDALPEDRGTY 569
Query: 643 ECRATNKYGSDVTKASLKCVSKTNL-ILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHL 701
C A N G A++ K E +L R +P P F Q L
Sbjct: 570 TCLAENAMGQVSCSATVTVQEKKGEGEREHRLSPARSKPIA---------PIF---LQGL 617
Query: 702 SNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIED 761
S+L + + ++ G+ V +L++G I+ S G L I ED
Sbjct: 618 SDLKVMDGSQVTMTVQVSGNPPPEVIWLHDGNEIQESEDFHFEQKGGWHSLCIQEVFPED 677
Query: 762 TGVYTCRATNKWGQAEISVNL 782
TG YTC A N G+ L
Sbjct: 678 TGTYTCEAWNSAGEVRTRAVL 698
|
Calcium/calmodulin-dependent myosin light chain kinase implicated in smooth muscle contraction via phosphorylation of myosin light chains (MLC). Also regulates actin-myosin interaction through a non-kinase activty. Phosphorylates PTK2B/PYK2 and myosin light-chains. Involved in the inflammatory response (e.g. apoptosis, vascular permeability, leukocyte diapedesis), cell motility and morphology, airway hyperreactivity and other activities relevant to asthma. Required for tonic airway smooth muscle contraction that is necessary for physiological and asthmatic airway resistance. Necessary for gastrointestinal motility. Implicated in the regulation of endothelial as well as vascular permeability, probably via the regulation of cytoskeletal rearrangements. In the nervous system it has been shown to control the growth initiation of astrocytic processes in culture and to participate in transmitter release at synapses formed between cultured sympathetic ganglion cells. Critical participant in signaling sequences that result in fibroblast apoptosis. Plays a role in the regulation of epithelial cell survival. Required for epithelial wound healing, especially during actomyosin ring contraction during purse-string wound closure. Mediates RhoA-dependent membrane blebbing. Triggers TRPC5 channel activity in a calcium-dependent signaling, by inducing its subcellular localization at the plasma membrane. Promotes cell migration (including tumor cells) and tumor metastasis. PTK2B/PYK2 activation by phosphorylation mediates ITGB2 activation and is thus essential to trigger neutrophil transmigration during acute lung injury (ALI). May regulate optic nerve head astrocyte migration. Probably involved in mitotic cytoskeletal regulation. Regulates tight junction probably by modulating ZO-1 exchange in the perijunctional actomyosin ring. Mediates burn-induced microvascular barrier injury; triggers endothelial contraction in the development of microvascular hyperpermeability by phosphorylating MLC. Essential for intestinal barrier dysfunction. Mediates Giardia spp.-mediated reduced epithelial barrier function during giardiasis intestinal infection via reorganization of cytoskeletal F-actin and tight junctional ZO-1. Necessary for hypotonicity-induced Ca(2+) entry and subsequent activation of volume-sensitive organic osmolyte/anion channels (VSOAC) in cervical cancer cells. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: 8 |
| >sp|A2AJ76|HMCN2_MOUSE Hemicentin-2 OS=Mus musculus GN=Hmcn2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 83.2 bits (204), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 132/606 (21%), Positives = 219/606 (36%), Gaps = 104/606 (17%)
Query: 236 TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL-- 293
++ + +G+P+ SHR+ +V G + L+I T++ D+G Y C ATN G+ + N+
Sbjct: 2704 SISWYKDGRPVTPSHRL-SVLGEGRL-LQIQPTQVSDSGRYLCVATNVAGEDDQDFNVLI 2761
Query: 294 -------ECVDKSKGQPP-----KFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWF 341
+ D G P + + + + + A+ C + PEL W+
Sbjct: 2762 QVPPMFQKMGDVDAGFEPLPHEEEAQGRVTEYREIVENNPAYLYCDTNAIPPPELT--WY 2819
Query: 342 HNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGG 401
G+P+ + V ++ G ++ + VQ+ D+G Y C+A N+ GED+ +
Sbjct: 2820 REGQPLSAADGVSVLQ--GGRILQLPLVQAEDAGRYSCKAANEVGEDWLHYELL------ 2871
Query: 402 VYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARL 461
V + P + E A +A E P V+ + G RL
Sbjct: 2872 VLTPPVIPGDTQELVEEVTVN-----ASSAVSLECPALGNPAPAVSWFQNGLPVSPSPRL 2926
Query: 462 TPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLT 521
+ + ++ + + VA+ + F ++ Q+ + ++ A L
Sbjct: 2927 QVLEEGQVLKVATAEVADAASYMCVAENQAGSAEKLFTLKVQVPPQISDWTTSQLTATLN 2986
Query: 522 PVTD--------PDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRA 573
P+ V W+ +G+ L G F G L + +SG Y C A
Sbjct: 2987 SSVSLPCEVYAHPNPEVTWYKDGQPLSLGQ--EAFLLPGTHTLRLARAQPADSGTYLCEA 3044
Query: 574 TNKYGSDVTKASLKCV---------------------SKTNLILES-QLPE--VEWFYNG 609
N G D L + K L E+ LPE V WF +
Sbjct: 3045 LNAAGRDQKMVQLNVLVPPSFKQAPGGPQEAIQVRAGDKAILSCETDSLPEPAVTWFKDQ 3104
Query: 610 KKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLIL 669
+ L G R + G L+IL + GVY C+ +N G + +L
Sbjct: 3105 QPLALGQRIQGLQ--GGQTLEILDSQASDKGVYSCKVSNTAGEAI----------RTFVL 3152
Query: 670 ESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGE--IAHFEASLIPVGDQTMTVE 727
Q+ PP F + N G + + S IP TV
Sbjct: 3153 AIQV-----------------PPTFEKPERETVNQVAGRTLVLACDVSGIP----APTVT 3191
Query: 728 FLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVW 787
+L + P+E+S V G + L L + G YTC A N QAE + V
Sbjct: 3192 WLKDRLPVESSVVHGVVSRGGRLQLSHL--QPAQAGTYTCVAEN--AQAEARKDFVVSVL 3247
Query: 788 SPSQTK 793
P Q +
Sbjct: 3248 VPPQIQ 3253
|
Mus musculus (taxid: 10090) |
| >sp|P11799|MYLK_CHICK Myosin light chain kinase, smooth muscle OS=Gallus gallus PE=1 SV=2 | Back alignment and function description |
|---|
Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 105/417 (25%), Positives = 165/417 (39%), Gaps = 84/417 (20%)
Query: 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRD 135
+ E Q + +++V K P+ +EW G P++ G + + G L L + D
Sbjct: 438 LEASEGQEIKFKSKVSGKPKPD--VEWFKEGVPIKTGEGIQIYEEDGTHCLWLKKACLGD 495
Query: 136 QGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVP 195
G Y+C A+N G+T TS + + PK EE
Sbjct: 496 SGSYSCAAFNPRGQTSTSWLLT----------VKRPKVEE-------------------- 525
Query: 196 DSEDGRPPQFTSEFQHLSNLSEGE--IAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR 253
P F+S + + +SEG+ + +PV + + +L N +PI+ +H
Sbjct: 526 -----VAPCFSSVLKGCT-VSEGQDFVLQCYVGGVPVPE----ITWLLNEQPIQYAH--- 572
Query: 254 TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL--------------ECVDKS 299
+ G+ L + ED G+YTC A N G+A S + + +
Sbjct: 573 STFEAGVAKLTVQDALPEDDGIYTCLAENNAGRASCSAQVTVKEKKSSKKAEGTQAAKLN 632
Query: 300 KGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDF 359
K P F +K L LK D + T+ +P ++ W HNGK I
Sbjct: 633 KTFAPIF---LKGLTDLKVMDGSQVIMTVEVSANPCPEIIWLHNGKEIQETEDFHFEKKG 689
Query: 360 GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELE 419
+ I V D+G+Y C AWN+ GE T+AT+ D +QP +++ R +
Sbjct: 690 NEYSLYIQEVFPEDTGKYTCEAWNELGETQTQATLTVQEP----QDGIQPWFISKPRSVT 745
Query: 420 NAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSN 476
A GQ + A +A P F T V K+GQ +TP T CE+ N
Sbjct: 746 AAAGQNVLISCA-IAGDP-FPT----VHWFKDGQ------EITPGTG----CEILQN 786
|
Phosphorylates a specific serine in the N-terminus of a myosin light chain, which leads to the formation of calmodulin/MLCK signal transduction complexes which allow selective transduction of calcium signals. Gallus gallus (taxid: 9031) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 805 | ||||||
| 345496576 | 7014 | PREDICTED: titin-like [Nasonia vitripenn | 0.936 | 0.107 | 0.561 | 0.0 | |
| 158285443 | 15844 | AGAP007563-PA [Anopheles gambiae str. PE | 0.952 | 0.048 | 0.560 | 0.0 | |
| 170042390 | 9108 | titin [Culex quinquefasciatus] gi|167865 | 0.951 | 0.084 | 0.569 | 0.0 | |
| 158285445 | 7484 | AGAP007563-PB [Anopheles gambiae str. PE | 0.952 | 0.102 | 0.560 | 0.0 | |
| 158285447 | 4897 | AGAP007563-PC [Anopheles gambiae str. PE | 0.952 | 0.156 | 0.558 | 0.0 | |
| 157109554 | 4779 | titin [Aedes aegypti] gi|108878986|gb|EA | 0.951 | 0.160 | 0.562 | 0.0 | |
| 328711567 | 6663 | PREDICTED: titin-like [Acyrthosiphon pis | 0.961 | 0.116 | 0.559 | 0.0 | |
| 312377335 | 6464 | hypothetical protein AND_11392 [Anophele | 0.944 | 0.117 | 0.547 | 0.0 | |
| 168823429 | 4816 | kettin protein [Bombyx mori] gi|18700457 | 0.940 | 0.157 | 0.541 | 0.0 | |
| 156900686 | 4454 | Kettin1 protein [Helicoverpa armigera] | 0.944 | 0.170 | 0.539 | 0.0 |
| >gi|345496576|ref|XP_001602095.2| PREDICTED: titin-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 893 bits (2308), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/832 (56%), Positives = 574/832 (68%), Gaps = 78/832 (9%)
Query: 2 VKATNSKGSATTSGTLKCLGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEE 61
VKATNSKGSA TSGTLKC ++ IYL+TQHP G AGLEKV+EV+ A A K +R SGPE+
Sbjct: 2820 VKATNSKGSAQTSGTLKCTSKQSIYLQTQHPQGQAGLEKVKEVDDAYASKAKRSDSGPEK 2879
Query: 62 TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
+ KP++ VPL+PEFKLGEA+PLHLE QVEPK+DPNLKIEW FNGK L+ G+RFK T DF
Sbjct: 2880 EYPKPIWTVPLQPEFKLGEAEPLHLEGQVEPKDDPNLKIEWYFNGKILQHGARFKMTCDF 2939
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQ 181
GFVTLDLT+VYDRD GIYTC+A+N AGE FTS+TIYCSTKE++IER+QHPKG+EGLE IQ
Sbjct: 2940 GFVTLDLTDVYDRDSGIYTCKAYNKAGEAFTSSTIYCSTKENVIERSQHPKGKEGLEAIQ 2999
Query: 182 DLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY 241
DLEESLR+QP P+SE G P FTS+ +LSNLSEGE+AHFEA+LIP GDQTM VE+ +
Sbjct: 3000 DLEESLRKQPGAAPESEGGHAPSFTSQSDNLSNLSEGELAHFEATLIPTGDQTMVVEWFF 3059
Query: 242 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKG 301
N IEASHRIRTV+AFG VVLE+LGTKIED+G YTCRATNKWG+AEIS+ LEC+DKS G
Sbjct: 3060 NENQIEASHRIRTVYAFGTVVLEVLGTKIEDSGTYTCRATNKWGKAEISLTLECIDKSMG 3119
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
Q P+FT+ I+SLEGLKD SAHF+CTL PV DP +KVEWFHNG+P+ H +R KMVSDFGF
Sbjct: 3120 QKPRFTTQIQSLEGLKDNQSAHFQCTLIPVGDPNMKVEWFHNGQPLRHSSRFKMVSDFGF 3179
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENA 421
VVMDIA V SHDSGEYVC+A NKYGED+T+ATIKCFGK GVYLDSLQP+SLA+IRELE
Sbjct: 3180 VVMDIAGVMSHDSGEYVCKASNKYGEDYTKATIKCFGKSGVYLDSLQPDSLAKIRELEAF 3239
Query: 422 QGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQ 481
G+Q A APVAE PKFITQI+D+T+L EGQSAHFEARLTPVTDPDL E + N
Sbjct: 3240 TGEQYAAPVAPVAEPPKFITQITDITKLVEGQSAHFEARLTPVTDPDLKIEWYYN----- 3294
Query: 482 GQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEAR-------------LTPVTDPDL 528
G++ + Q F I D+ E S +E R L ++ +L
Sbjct: 3295 GKK-LPQGHRYRTFHDFGIVILDILYCYEENSGEYECRAVNKYGQDSTKATLRCLSKANL 3353
Query: 529 VVEWFYNGKKLPHG-----HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 583
++E +LP G + +T D I E + T G K
Sbjct: 3354 ILE-----SQLPKGMEGGLEKIQTLEDAMI-------------KTREEKVTETKG----K 3391
Query: 584 ASLKCVSKTNLI---------LESQLP-------EVEWFYNGKKLPHGHRYRTFHDFGIV 627
A + V +NL E++L +VEWF+NGK L G R+RTF DFG V
Sbjct: 3392 APVFTVPLSNLDGLREGESAHFEARLTPTDDPKLKVEWFWNGKPLRTGTRFRTFCDFGFV 3451
Query: 628 ILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPE------------ 675
IL+I Y E+SG Y CRATN YG VT S+KC K ++ILESQLP+
Sbjct: 3452 ILEISPIYPEDSGEYSCRATNDYGEAVTTCSMKCTGKRSIILESQLPKGMEGTIDKIAEL 3511
Query: 676 --LRRQPAG-VPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG 732
L +P PD + G+PP+F + L+ LSE +AHFE L PV D +M VE+ +NG
Sbjct: 3512 EGLGAEPGQPSPDDDTGKPPEFITTPSDLT-LSENSLAHFECRLQPVNDSSMRVEWFHNG 3570
Query: 733 KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784
KP+ A R++T++ FG V+LE+ D+G+YTC+A N+ G+A ++ L+
Sbjct: 3571 KPLLAGSRVKTIYDFGFVILEVANCYQRDSGLYTCKAVNRHGEATVNCKLQV 3622
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158285443|ref|XP_001687892.1| AGAP007563-PA [Anopheles gambiae str. PEST] gi|157019994|gb|EDO64541.1| AGAP007563-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2301), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/814 (56%), Positives = 568/814 (69%), Gaps = 47/814 (5%)
Query: 3 KATNSKGSATTSGTLKCLGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEET 62
KATNSKGSA+TSG+L+C +YL+TQHP G AGLE VQ+ E ALA +Y+RQ S PE
Sbjct: 2931 KATNSKGSASTSGSLRCASTTTMYLDTQHPQGKAGLEAVQDTEAALANRYRRQESKPESA 2990
Query: 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
F KP + V L+ EF+L EA+ LHLE QVEPK+DPNLKIEW FNGK LE GSRFK T+DFG
Sbjct: 2991 FPKPQWTVQLQSEFRLNEAEALHLEGQVEPKDDPNLKIEWYFNGKVLEHGSRFKMTSDFG 3050
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQD 182
FVTLDLTEVY+RDQGIYTC+A+N AGE FTS+T+YC TKESLIERTQHPKG EGLEKIQD
Sbjct: 3051 FVTLDLTEVYERDQGIYTCKAYNQAGEAFTSSTVYCVTKESLIERTQHPKGTEGLEKIQD 3110
Query: 183 LEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 242
LE+SLRR G +S+ G P+FTSEF L+N+ EGEIAHF+A+LIP GDQ+MT+E+LYN
Sbjct: 3111 LEDSLRRPEGGEAESDAGHAPRFTSEFVKLTNVGEGEIAHFDATLIPTGDQSMTIEWLYN 3170
Query: 243 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQ 302
GK +EASHR+RTV+AFGMVVLEILGTKIED+G YTCRATN+WG AEISV+LECVDKS GQ
Sbjct: 3171 GKQLEASHRVRTVYAFGMVVLEILGTKIEDSGSYTCRATNRWGTAEISVDLECVDKSAGQ 3230
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P+FT+ ++SLEGLKDG SAHFECTL PVNDP+LKVEWFHNGKP+ H NR+K VSDFG+V
Sbjct: 3231 KPRFTTQLQSLEGLKDGQSAHFECTLVPVNDPDLKVEWFHNGKPMRHSNRIKPVSDFGYV 3290
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQ 422
++DIAYVQSHDSGEYVCRA NKYGED TRAT+KCFGKGGVYL+SLQP+SLARIRELE+
Sbjct: 3291 LVDIAYVQSHDSGEYVCRASNKYGEDTTRATLKCFGKGGVYLESLQPDSLARIRELESQS 3350
Query: 423 GQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQG 482
G + A +PV EAP+F T+ISD+T+L EGQSAHFEARLTP+ DP+LV E + N G
Sbjct: 3351 GAKQTAAGSPVGEAPRFTTKISDITKLVEGQSAHFEARLTPINDPELVVEWYWN-----G 3405
Query: 483 QQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTP-------------VTDPDLV 529
Q+ + F I D+ E S FE R T ++ +L+
Sbjct: 3406 QK-LPHGHRYRTFHDFGIVILDILYCYEENSGEFECRATNKYGSDSTKATLRCISKANLI 3464
Query: 530 VEWFYNGKKLPHG-----HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584
++ +LP G + +T D I D E + S
Sbjct: 3465 LD-----SQLPRGMEGGLEKIQTLEDSLIRTRDERERTEGGRAPVFTTPLSNIDSLREGE 3519
Query: 585 SLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYEC 644
S +K + +L +VEWF+NGK L G R+RTF DFG VIL+I Y E+SG Y C
Sbjct: 3520 SAHFEAKLTPTDDPKL-KVEWFWNGKPLKTGSRFRTFCDFGFVILEISPVYPEDSGEYSC 3578
Query: 645 RATNKYGSDVTKASLKCVSKTNLILESQLPE----------------LRRQPAGVPDSED 688
RATN+YG VT ++++ K ++ILESQLP+ + G PD +
Sbjct: 3579 RATNEYGEAVTTSTMRVQGKRSIILESQLPKGMESTIERIAELEGLGIPHGGLGSPDDDT 3638
Query: 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
G+PP+F + ++ L+E +AHFE L P+ D +M VE+ +NGK + A RI+T++ FG
Sbjct: 3639 GKPPEFITTPSDMT-LTENSLAHFECRLTPINDPSMRVEWYHNGKALWAGSRIKTINDFG 3697
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
V+LEI G D+G+YTC+ATN+ G+A +S L
Sbjct: 3698 FVILEIAGCYQRDSGLYTCKATNRHGEATVSCKL 3731
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170042390|ref|XP_001848911.1| titin [Culex quinquefasciatus] gi|167865871|gb|EDS29254.1| titin [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2299), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/813 (56%), Positives = 568/813 (69%), Gaps = 47/813 (5%)
Query: 3 KATNSKGSATTSGTLKCLGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEET 62
KATN+KGSA+TSG+L+C +YL+TQHP G AGLE VQ+ E ALA +Y+RQ S PE
Sbjct: 2878 KATNNKGSASTSGSLRCTSTTSMYLDTQHPQGKAGLEAVQDTEAALANRYKRQDSKPEAA 2937
Query: 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
+ KP + V L+ EF+L EA+ LHLE QVEPKNDPNLKIEW FNGK LE GSRFK T+DFG
Sbjct: 2938 YPKPTWTVELQSEFRLNEAESLHLEGQVEPKNDPNLKIEWYFNGKVLEHGSRFKMTSDFG 2997
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQD 182
FVTLDLTEVY+RDQGIYTC+A+N +GE FTS+TIYC TKESLIERTQHPKG EGLEKIQD
Sbjct: 2998 FVTLDLTEVYERDQGIYTCKAYNYSGEAFTSSTIYCVTKESLIERTQHPKGTEGLEKIQD 3057
Query: 183 LEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 242
LEESLRRQ AG DS+ G P+FTSEF ++N+ EGEIAHF+A+LIP GDQ+M +E+ YN
Sbjct: 3058 LEESLRRQEAGQADSDAGHAPKFTSEFVAVTNV-EGEIAHFDATLIPTGDQSMVIEWFYN 3116
Query: 243 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQ 302
GK +EASHR+RTV+AFGMVVLEILGTKIED+G YTC+ATNKWG AEISV LECVDKS GQ
Sbjct: 3117 GKQLEASHRVRTVYAFGMVVLEILGTKIEDSGNYTCKATNKWGSAEISVQLECVDKSAGQ 3176
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P+FT+ I++LEGLKDG SAHFECTL PVNDPELKVEWFHNGKP+ H NR+K VSDFG+V
Sbjct: 3177 KPRFTTQIQNLEGLKDGQSAHFECTLVPVNDPELKVEWFHNGKPLRHSNRIKPVSDFGYV 3236
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQ 422
++DIAYVQSHDSGEYVCRA NKYGED TRAT+KC GKGGVYL+SLQP+SLARIRELE+
Sbjct: 3237 LLDIAYVQSHDSGEYVCRASNKYGEDSTRATLKCTGKGGVYLESLQPDSLARIRELESQA 3296
Query: 423 GQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQG 482
G +P A +PV EAP+FIT+I+DVT+L EGQSAHFEARLTPVTDPDLV E + N G
Sbjct: 3297 GMKPTAAGSPVGEAPRFITKIADVTKLVEGQSAHFEARLTPVTDPDLVVEWYWN-----G 3351
Query: 483 QQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTP-------------VTDPDLV 529
Q+ + F I D+ E S FE R T V+ +L+
Sbjct: 3352 QK-LPHGHRYRTFHDFGIVILDILYCYEENSGEFECRATNKYGSDSTKATLKCVSKANLI 3410
Query: 530 VEWFYNGKKLPHG-----HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584
++ +LP G + +T D + D E + S
Sbjct: 3411 LD-----SQLPRGMEGGLEKIQTLEDSLVRTRDERERTEGGRAPVFTVPLSNIDSLREGE 3465
Query: 585 SLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYEC 644
S K + +L +VEWF+NGK L G R+RTF DFG VIL+I Y E+SG Y C
Sbjct: 3466 SAHFEGKLTPTDDPKL-KVEWFWNGKPLKTGSRFRTFCDFGFVILEISPVYPEDSGEYSC 3524
Query: 645 RATNKYGSDVTKASLKCVSKTNLILESQLPE--------------LRRQPAGV-PDSEDG 689
RATN+YG VT +++K K ++I+ESQLP+ L G+ PD + G
Sbjct: 3525 RATNEYGEAVTSSTMKVQGKRSIIMESQLPKGMEGTIGRIAELEGLGMPHGGISPDDDTG 3584
Query: 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGM 749
+PP+F + L+ L+E +AHFE L P+ D +M VE+ +NGK + A RI+T++ FG
Sbjct: 3585 KPPEFITTPSDLT-LTENSLAHFECRLTPINDPSMRVEWYHNGKALWAGSRIKTINDFGF 3643
Query: 750 VVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
V+LEI G D+G+YTC+ATN G+A +S L
Sbjct: 3644 VILEIAGCYQRDSGLYTCKATNSHGEATVSCKL 3676
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158285445|ref|XP_308312.4| AGAP007563-PB [Anopheles gambiae str. PEST] gi|157019995|gb|EAA45411.4| AGAP007563-PB [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 885 bits (2287), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/814 (56%), Positives = 568/814 (69%), Gaps = 47/814 (5%)
Query: 3 KATNSKGSATTSGTLKCLGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEET 62
KATNSKGSA+TSG+L+C +YL+TQHP G AGLE VQ+ E ALA +Y+RQ S PE
Sbjct: 2931 KATNSKGSASTSGSLRCASTTTMYLDTQHPQGKAGLEAVQDTEAALANRYRRQESKPESA 2990
Query: 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
F KP + V L+ EF+L EA+ LHLE QVEPK+DPNLKIEW FNGK LE GSRFK T+DFG
Sbjct: 2991 FPKPQWTVQLQSEFRLNEAEALHLEGQVEPKDDPNLKIEWYFNGKVLEHGSRFKMTSDFG 3050
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQD 182
FVTLDLTEVY+RDQGIYTC+A+N AGE FTS+T+YC TKESLIERTQHPKG EGLEKIQD
Sbjct: 3051 FVTLDLTEVYERDQGIYTCKAYNQAGEAFTSSTVYCVTKESLIERTQHPKGTEGLEKIQD 3110
Query: 183 LEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 242
LE+SLRR G +S+ G P+FTSEF L+N+ EGEIAHF+A+LIP GDQ+MT+E+LYN
Sbjct: 3111 LEDSLRRPEGGEAESDAGHAPRFTSEFVKLTNVGEGEIAHFDATLIPTGDQSMTIEWLYN 3170
Query: 243 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQ 302
GK +EASHR+RTV+AFGMVVLEILGTKIED+G YTCRATN+WG AEISV+LECVDKS GQ
Sbjct: 3171 GKQLEASHRVRTVYAFGMVVLEILGTKIEDSGSYTCRATNRWGTAEISVDLECVDKSAGQ 3230
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P+FT+ ++SLEGLKDG SAHFECTL PVNDP+LKVEWFHNGKP+ H NR+K VSDFG+V
Sbjct: 3231 KPRFTTQLQSLEGLKDGQSAHFECTLVPVNDPDLKVEWFHNGKPMRHSNRIKPVSDFGYV 3290
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQ 422
++DIAYVQSHDSGEYVCRA NKYGED TRAT+KCFGKGGVYL+SLQP+SLARIRELE+
Sbjct: 3291 LVDIAYVQSHDSGEYVCRASNKYGEDTTRATLKCFGKGGVYLESLQPDSLARIRELESQS 3350
Query: 423 GQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQG 482
G + A +PV EAP+F T+ISD+T+L EGQSAHFEARLTP+ DP+LV E + N G
Sbjct: 3351 GAKQTAAGSPVGEAPRFTTKISDITKLVEGQSAHFEARLTPINDPELVVEWYWN-----G 3405
Query: 483 QQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTP-------------VTDPDLV 529
Q+ + F I D+ E S FE R T ++ +L+
Sbjct: 3406 QK-LPHGHRYRTFHDFGIVILDILYCYEENSGEFECRATNKYGSDSTKATLRCISKANLI 3464
Query: 530 VEWFYNGKKLPHG-----HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584
++ +LP G + +T D I D E + S
Sbjct: 3465 LD-----SQLPRGMEGGLEKIQTLEDSLIRTRDERERTEGGRAPVFTTPLSNIDSLREGE 3519
Query: 585 SLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYEC 644
S +K + +L +VEWF+NGK L G R+RTF DFG VIL+I Y E+SG Y C
Sbjct: 3520 SAHFEAKLTPTDDPKL-KVEWFWNGKPLKTGSRFRTFCDFGFVILEISPVYPEDSGEYSC 3578
Query: 645 RATNKYGSDVTKASLKCVSKTNLILESQLPE----------------LRRQPAGVPDSED 688
RATN+YG VT ++++ K ++ILESQLP+ + G PD +
Sbjct: 3579 RATNEYGEAVTTSTMRVQGKRSIILESQLPKGMESTIERIAELEGLGIPHGGLGSPDDDT 3638
Query: 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
G+PP+F + ++ L+E +AHFE L P+ D +M VE+ +NGK + A RI+T++ FG
Sbjct: 3639 GKPPEFITTPSDMT-LTENSLAHFECRLTPINDPSMRVEWYHNGKALWAGSRIKTINDFG 3697
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
V+LEI G D+G+YTC+ATN+ G+A +S L
Sbjct: 3698 FVILEIAGCYQRDSGLYTCKATNRHGEATVSCKL 3731
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158285447|ref|XP_308314.4| AGAP007563-PC [Anopheles gambiae str. PEST] gi|157019996|gb|EAA04742.5| AGAP007563-PC [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 884 bits (2284), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/814 (55%), Positives = 566/814 (69%), Gaps = 47/814 (5%)
Query: 3 KATNSKGSATTSGTLKCLGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEET 62
KATNSKGSA+TSG+L+C +YL+TQHP G AGLE VQ+ E ALA +Y+RQ S PE
Sbjct: 2931 KATNSKGSASTSGSLRCASTTTMYLDTQHPQGKAGLEAVQDTEAALANRYRRQESKPESA 2990
Query: 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
F KP + V L+ EF+L EA+ LHLE QVEPK+DPNLKIEW FNGK LE GSRFK T+DFG
Sbjct: 2991 FPKPQWTVQLQSEFRLNEAEALHLEGQVEPKDDPNLKIEWYFNGKVLEHGSRFKMTSDFG 3050
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQD 182
FVTLDLTEVY+RDQGIYTC+A+N AGE FTS+T+YC TKESLIERTQHPKG EGLEKIQD
Sbjct: 3051 FVTLDLTEVYERDQGIYTCKAYNQAGEAFTSSTVYCVTKESLIERTQHPKGTEGLEKIQD 3110
Query: 183 LEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 242
LE+SLRR G +S+ G P+FTSEF L+N+ EGEIAHF+A+LIP GDQ+MT+E+LYN
Sbjct: 3111 LEDSLRRPEGGEAESDAGHAPRFTSEFVKLTNVGEGEIAHFDATLIPTGDQSMTIEWLYN 3170
Query: 243 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQ 302
GK +EASHR+RTV+AFGMVVLEILGTKIED+G YTCRATN+WG AEISV+LECVDKS GQ
Sbjct: 3171 GKQLEASHRVRTVYAFGMVVLEILGTKIEDSGSYTCRATNRWGTAEISVDLECVDKSAGQ 3230
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P+FT+ ++SLEGLKDG SAHFECTL PVNDP+LKVEWFHNGKP+ H NR+K VSDFG+V
Sbjct: 3231 KPRFTTQLQSLEGLKDGQSAHFECTLVPVNDPDLKVEWFHNGKPMRHSNRIKPVSDFGYV 3290
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQ 422
++DIAYVQSHDSGEYVCRA NKYGED TRAT+KCFGKGGVYL+SLQP+SLARIRELE+
Sbjct: 3291 LVDIAYVQSHDSGEYVCRASNKYGEDTTRATLKCFGKGGVYLESLQPDSLARIRELESQS 3350
Query: 423 GQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQG 482
G + A +PV EAP+F T+ISD+T+L EGQSAHFEARLTP+ DP+LV E + N
Sbjct: 3351 GAKQTAAGSPVGEAPRFTTKISDITKLVEGQSAHFEARLTPINDPELVVEWYWN------ 3404
Query: 483 QQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTP-------------VTDPDLV 529
Q + F I D+ E S FE R T ++ +L+
Sbjct: 3405 GQKLPHGHRYRTFHDFGIVILDILYCYEENSGEFECRATNKYGSDSTKATLRCISKANLI 3464
Query: 530 VEWFYNGKKLPHG-----HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584
++ +LP G + +T D I D E + S
Sbjct: 3465 LD-----SQLPRGMEGGLEKIQTLEDSLIRTRDERERTEGGRAPVFTTPLSNIDSLREGE 3519
Query: 585 SLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYEC 644
S +K + +L +VEWF+NGK L G R+RTF DFG VIL+I Y E+SG Y C
Sbjct: 3520 SAHFEAKLTPTDDPKL-KVEWFWNGKPLKTGSRFRTFCDFGFVILEISPVYPEDSGEYSC 3578
Query: 645 RATNKYGSDVTKASLKCVSKTNLILESQLPE----------------LRRQPAGVPDSED 688
RATN+YG VT ++++ K ++ILESQLP+ + G PD +
Sbjct: 3579 RATNEYGEAVTTSTMRVQGKRSIILESQLPKGMESTIERIAELEGLGIPHGGLGSPDDDT 3638
Query: 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
G+PP+F + ++ L+E +AHFE L P+ D +M VE+ +NGK + A RI+T++ FG
Sbjct: 3639 GKPPEFITTPSDMT-LTENSLAHFECRLTPINDPSMRVEWYHNGKALWAGSRIKTINDFG 3697
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
V+LEI G D+G+YTC+ATN+ G+A +S L
Sbjct: 3698 FVILEIAGCYQRDSGLYTCKATNRHGEATVSCKL 3731
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157109554|ref|XP_001650722.1| titin [Aedes aegypti] gi|108878986|gb|EAT43211.1| AAEL005324-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 879 bits (2270), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/813 (56%), Positives = 565/813 (69%), Gaps = 47/813 (5%)
Query: 3 KATNSKGSATTSGTLKCLGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEET 62
KATN+KGSA+TSG+L+C +YL+TQHPMG AGLE VQ+ E ALA +Y+RQ S PE
Sbjct: 2810 KATNNKGSASTSGSLRCTSTTTMYLDTQHPMGKAGLEAVQDTEAALANRYKRQESKPEGA 2869
Query: 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
F P + V L+ EF+L EA+ LHLE QVEPK+DP+LKIEW FNGK L+ GSRFK T DFG
Sbjct: 2870 FPAPKWTVELQSEFRLNEAESLHLEGQVEPKDDPDLKIEWYFNGKVLQHGSRFKMTNDFG 2929
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQD 182
FVTLDLTEVY+RDQG YTC+A+N +GE FTSTT+YC TKESLIERTQHPKG EGLEKIQD
Sbjct: 2930 FVTLDLTEVYERDQGTYTCKAYNYSGEAFTSTTVYCVTKESLIERTQHPKGTEGLEKIQD 2989
Query: 183 LEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 242
LEESLRRQ A ++E G P+FTSEF ++N+ EGEIAHF+A+LIP GDQTM +E+ YN
Sbjct: 2990 LEESLRRQEAAQTEAEGGHAPRFTSEFVAVANV-EGEIAHFDATLIPTGDQTMVIEWFYN 3048
Query: 243 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQ 302
GK +EASHR+RTV+AFGMVVLEILGTKIED+G Y+CRATNKWG AEISV+LECVDKS GQ
Sbjct: 3049 GKTLEASHRVRTVYAFGMVVLEILGTKIEDSGTYSCRATNKWGTAEISVHLECVDKSAGQ 3108
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P+FT+ I++LEGLKDG SAHFECTL PVNDP+LKVEWFHNGKP+ H NR+K VSDFG+V
Sbjct: 3109 KPRFTTQIQNLEGLKDGQSAHFECTLVPVNDPDLKVEWFHNGKPLRHSNRIKPVSDFGYV 3168
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQ 422
++DIAYVQSHDSGEY+C+A NKYGED TRAT+KCFGKGGVYL+SLQP+SLARIRELE+
Sbjct: 3169 LLDIAYVQSHDSGEYICKASNKYGEDTTRATLKCFGKGGVYLESLQPDSLARIRELESQA 3228
Query: 423 GQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQG 482
G +P A +PV EAP+F+T+ISD+T+L EGQSAHFEARLTP+TDPDLV E + N
Sbjct: 3229 GMKPTAAGSPVGEAPRFVTKISDITKLVEGQSAHFEARLTPLTDPDLVVEWYWN------ 3282
Query: 483 QQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTP-------------VTDPDLV 529
Q + F I D+ E S FE R T V+ +L+
Sbjct: 3283 GQKLPHGHRYRTFHDFGIVILDILYCYEENSGEFECRATNKYGSDSTKATLKCVSKANLI 3342
Query: 530 VEWFYNGKKLPHG-----HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584
++ +LPHG + +T D + D E + S
Sbjct: 3343 LD-----SQLPHGMEGGLEKIQTLEDSLVRTRDERERVEGGRAPVFTVPLSNIDSLREGE 3397
Query: 585 SLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYEC 644
S K + +L +VEWF+NGK L G R+RTF DFG VIL+I Y E+SG Y C
Sbjct: 3398 SAHFEGKLTPTDDPRL-KVEWFWNGKPLKTGSRFRTFCDFGFVILEISPVYPEDSGEYSC 3456
Query: 645 RATNKYGSDVTKASLKCVSKTNLILESQLPE-----LRR--------QPAG--VPDSEDG 689
RA+N+YG VT A++K K ++ILESQLP+ + R P G PD + G
Sbjct: 3457 RASNEYGEAVTTATMKVQGKRSIILESQLPKGMEGTIERIAELEGLGIPHGGLTPDDDSG 3516
Query: 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGM 749
+PP+F + L+E +AHFE L PV D +M VE+ +NGK + A RI+T++ FG
Sbjct: 3517 KPPEFITTPSD-QTLTENSLAHFECRLTPVNDPSMRVEWYHNGKALWAGSRIKTINDFGF 3575
Query: 750 VVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
V+LEI G D+G+YTC+ATN G+A +S L
Sbjct: 3576 VILEIAGCYQRDSGLYTCKATNSHGEATVSCKL 3608
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328711567|ref|XP_003244574.1| PREDICTED: titin-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 877 bits (2266), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/810 (55%), Positives = 557/810 (68%), Gaps = 36/810 (4%)
Query: 3 KATNSKGSATTSGTLKCLGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEET 62
KA+NSKG A T+GTLKC G + I+L+TQHP G GLEKVQ+VE LA KYQRQ S PE
Sbjct: 2828 KASNSKGQAVTTGTLKCTGLQGIHLDTQHPQGKTGLEKVQKVEDNLASKYQRQASLPEAA 2887
Query: 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
F KP+F+VPL+ EF L E++PLHLEAQVEPKNDPNLKIEW FNGK L+LGSRFKT DFG
Sbjct: 2888 FPKPIFVVPLEAEFILAESKPLHLEAQVEPKNDPNLKIEWYFNGKVLDLGSRFKTNNDFG 2947
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQD 182
F++LDLT+VY+RDQG+YTC+A+N +GET+TSTT+YCS+ + LIE TQHPKGEEGLEKIQ
Sbjct: 2948 FISLDLTDVYERDQGVYTCKAYNHSGETYTSTTVYCSSNKGLIEHTQHPKGEEGLEKIQS 3007
Query: 183 LEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 242
LEESL+RQ G+ D E G P FTS+F+ L LSEGEIAH+EASL PVGDQ M VE+ YN
Sbjct: 3008 LEESLQRQKQGITDKETGHAPVFTSQFKDLGFLSEGEIAHYEASLTPVGDQKMVVEWFYN 3067
Query: 243 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQ 302
G IEASHRIRT++AFGMVVLEILGTKI DTG YTC+ATN +G AE+SV LECV++ GQ
Sbjct: 3068 GNAIEASHRIRTIYAFGMVVLEILGTKIADTGTYTCKATNDYGSAEMSVTLECVERITGQ 3127
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
PKFTS I++L GLKDGDSAHFECTL PVNDP+LKVEWFHNG+P+ HKNRVKM+SDFGFV
Sbjct: 3128 KPKFTSQIQTLVGLKDGDSAHFECTLIPVNDPDLKVEWFHNGQPLLHKNRVKMISDFGFV 3187
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQ 422
VMDIAY+Q+HDSGEYVC+A NKYGED T+ATI+ GKGGVYLDSLQP SLARI ELENA
Sbjct: 3188 VMDIAYIQNHDSGEYVCKASNKYGEDITKATIQYSGKGGVYLDSLQPTSLARIHELENAT 3247
Query: 423 GQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQG 482
GQ ++PV EAPKF TQ+ D+T LKEGQSAHFEAR+TPV DP+LV E + N G
Sbjct: 3248 GQPSGFASSPVLEAPKFTTQLVDITNLKEGQSAHFEARVTPVNDPNLVVEWYFN-----G 3302
Query: 483 QQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARL-----TPVTDPDLVVEWFYN-- 535
++ + F I D+ E S +E R T T +L N
Sbjct: 3303 EK-LQHGHRFRTFHDFGIVILDILYCYEENSGVYECRAFNKAGTDTTKANLRCSSKTNLI 3361
Query: 536 -GKKLPHG-----HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589
+LP G + +T D + + D E + S S
Sbjct: 3362 LDSQLPRGMEGGLEKIQTLEDLTLRVKDERVSVENRQAPMFTEPLSNIDSLREGESAHFE 3421
Query: 590 SKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNK 649
+ + + L +VEWF+NGK L G R+RTF +FG VIL+I Y E+SG Y CRA+N
Sbjct: 3422 GRLTPVDDPNL-KVEWFWNGKPLKAGSRFRTFCEFGFVILEISPVYPEDSGEYSCRASNH 3480
Query: 650 YGSDVTKASLKCVSKTNLILESQLPE--------------LRRQPAGVPDSED-GRPPQF 694
+G VT AS+K K ++I ESQLP+ L + A + +D GR P+F
Sbjct: 3481 FGEAVTTASMKVQGKRSIIFESQLPKGMDTTIDRIAELEGLGKSRATIETEDDLGRAPEF 3540
Query: 695 TSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEI 754
+ LS LSE +AHFE L+P D +MTV + +NGK + A RI+T++ FG V+LE+
Sbjct: 3541 ITTPADLS-LSENSLAHFECRLVPSNDASMTVTWFHNGKVLSAGSRIKTINDFGFVILEV 3599
Query: 755 LGTKIEDTGVYTCRATNKWGQAEISVNLEC 784
G I D+G+YTC+A NK G+A +S L+
Sbjct: 3600 AGVYIRDSGLYTCKAINKHGEATVSCKLQV 3629
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|312377335|gb|EFR24189.1| hypothetical protein AND_11392 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 860 bits (2223), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/814 (54%), Positives = 560/814 (68%), Gaps = 54/814 (6%)
Query: 3 KATNSKGSATTSGTLKCLGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEET 62
KATNSKGSA+TSG+L+C +YL+TQHP G AGLE VQ+ E ALA +++R+ PE T
Sbjct: 2273 KATNSKGSASTSGSLRCTSTTTMYLDTQHPQGKAGLEAVQDTEAALANRHRREDGKPETT 2332
Query: 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
+ KP +IV L+ EF+L EA+ LHLE VEPK+DPNLKIEW FNGK L+ GSRFK T+DFG
Sbjct: 2333 YPKPQWIVQLQHEFRLNEAESLHLEGTVEPKDDPNLKIEWYFNGKVLQHGSRFKMTSDFG 2392
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQD 182
FVTLDLTEVY+RDQGIYTC+A+NLAGE FTS+T+YC TKESLIERTQHPKG EGLEKIQD
Sbjct: 2393 FVTLDLTEVYERDQGIYTCKAYNLAGEAFTSSTVYCVTKESLIERTQHPKGTEGLEKIQD 2452
Query: 183 LEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 242
LE+SLRRQ DS+ G P+FT N+ EGEIAHF+A+LIP GDQTM +E+ YN
Sbjct: 2453 LEDSLRRQQGAPADSDAGHAPRFT-------NIGEGEIAHFDATLIPTGDQTMNIEWFYN 2505
Query: 243 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQ 302
GK ++ASHR+RTV+AFGMVVLEILGTKIEDTG YTCRATNKWG AEISV LECV+K GQ
Sbjct: 2506 GKQLDASHRVRTVYAFGMVVLEILGTKIEDTGSYTCRATNKWGTAEISVQLECVEKPAGQ 2565
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P+FT+HI++L+GLKDG SAHFECTL PVNDP+LKVEWFHNGKP+ H R+K VSDFG+V
Sbjct: 2566 KPRFTTHIQNLDGLKDGQSAHFECTLVPVNDPDLKVEWFHNGKPLRHSTRIKPVSDFGYV 2625
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQ 422
++DIAYVQSHDSGEYVCRA NKYGED TRAT+KCFGKGGVYL+SLQP+SLARIRELE+
Sbjct: 2626 LLDIAYVQSHDSGEYVCRASNKYGEDSTRATLKCFGKGGVYLESLQPDSLARIRELESQA 2685
Query: 423 GQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQG 482
G + A +PV EAP+F ++ISD+T+L EGQSAHFEARLTP+ DP+LV E + N G
Sbjct: 2686 GVKQTAAGSPVGEAPRFTSKISDITKLVEGQSAHFEARLTPINDPELVVEWYWN-----G 2740
Query: 483 QQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTP-------------VTDPDLV 529
Q+ + F I D+ E S FE R T V+ +L+
Sbjct: 2741 QK-LPHGHRYRTFHDFGIVILDILYCYEENSGEFECRATNKYGSDSTKATLKCVSKANLI 2799
Query: 530 VEWFYNGKKLPHG-----HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584
++ +LP G + +T D + D E + S
Sbjct: 2800 LD-----SQLPRGMEGGLEKIQTLEDSLVRTRDERERVEGGRAPVFTTPLSNIDSLREGE 2854
Query: 585 SLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYEC 644
S +K + +L +VEWF+NGK L G R+RTF DFG V+L+I Y E+SG Y C
Sbjct: 2855 SAHFEAKLTPTDDPKL-KVEWFWNGKPLKTGSRFRTFCDFGFVVLEISPVYPEDSGEYSC 2913
Query: 645 RATNKYGSDVTKASLKCVSKTNLILESQLPE----------------LRRQPAGVPDSED 688
RATN+YG VT +++K K ++ILESQLP+ + G PD +
Sbjct: 2914 RATNEYGEAVTTSTMKVQGKRSIILESQLPKGMEGTIERIAELEGLGISHGGLGSPDDDT 2973
Query: 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
G+PP+F + ++ L+E +AHFE L P+ D +M VE+ +NGK + A RI+T++ FG
Sbjct: 2974 GKPPEFITTPSDMT-LTENSLAHFECRLTPINDPSMRVEWYHNGKALWAGSRIKTINDFG 3032
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
V+LEI G D+G+YTC+ATN+ G+A +S L
Sbjct: 3033 FVILEIAGCYQRDSGLYTCKATNRHGEATVSCKL 3066
|
Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|168823429|ref|NP_001108348.1| kettin protein [Bombyx mori] gi|18700457|dbj|BAB85196.1| BMKETTIN [Bombyx mori] gi|22474512|dbj|BAC10617.1| KETTIN [Bombyx mori] | Back alignment and taxonomy information |
|---|
Score = 855 bits (2208), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/825 (54%), Positives = 562/825 (68%), Gaps = 68/825 (8%)
Query: 3 KATNSKGSATTSGTLKCLGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEET 62
KATNSKGSATTSG+L+C G K L+TQHP G AGLE V++ E A K R+PS P+
Sbjct: 2850 KATNSKGSATTSGSLRCTGDKTFTLDTQHPQGKAGLEAVEQAEEARLAK-GRRPSVPDTE 2908
Query: 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
+ KP +I+P+ E +L E Q LHLE QVEPKNDP+LKIEW FNGK LE GSRFK T+DFG
Sbjct: 2909 YPKPEWIIPIAAEHQLVEGQVLHLEGQVEPKNDPDLKIEWYFNGKVLEQGSRFKLTSDFG 2968
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQD 182
FVTLDL +VY+RD GIYTC+A+N GE FTS+T+YC++K++LIERTQHPKG EGLEKIQ+
Sbjct: 2969 FVTLDLVDVYERDSGIYTCKAYNKRGEAFTSSTVYCTSKDNLIERTQHPKGTEGLEKIQN 3028
Query: 183 LEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 242
LE+SLR++P PD + GRPP+FT+ F+ + ++SEG+IAH+EASLIP GDQ+M +E+ YN
Sbjct: 3029 LEDSLRKEPGQQPDDDTGRPPEFTTVFKDIVDISEGQIAHYEASLIPTGDQSMVIEWFYN 3088
Query: 243 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQ 302
GK IEASHRIRTV+AFGMVVLEILGTK D+G Y+CRATNKWGQAEISV LECVDKSKGQ
Sbjct: 3089 GKTIEASHRIRTVYAFGMVVLEILGTKTTDSGTYSCRATNKWGQAEISVKLECVDKSKGQ 3148
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P+FT+HI+++EGLKDG SAHFECT+ PV+DP++K+EW+HNG+P+ H R+K VSDFGFV
Sbjct: 3149 KPRFTTHIQNIEGLKDGQSAHFECTVVPVDDPDMKIEWYHNGQPMRHSTRIKTVSDFGFV 3208
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQ 422
V+DIAY Q+HDSGEYVCRA+NKYGEDFTRATI C+GKGGVYL+SLQP+SLA+IRELE+ Q
Sbjct: 3209 VLDIAYTQNHDSGEYVCRAYNKYGEDFTRATINCYGKGGVYLESLQPDSLAKIRELESLQ 3268
Query: 423 GQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQG 482
G Q + P AE PKFITQI DVT+L EGQSAHFEARL PV DPDL E F N
Sbjct: 3269 GAQQQTPSTPSAEPPKFITQIQDVTKLVEGQSAHFEARLVPVDDPDLKVEWFYN------ 3322
Query: 483 QQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE-------------ARLTPVTDPDLV 529
+ + F I D+ E S +E A L + +L+
Sbjct: 3323 GKKLPHGHRYRTFHDFGIVILDILYCYEENSGEYECVATNKLGRDSTKANLKCTSKENLI 3382
Query: 530 VEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589
++ +LP R H+ G+ L L E+S V R + KA + V
Sbjct: 3383 LD-----SQLP-----RVRHEGGLEKLQTL----EDSMVR--RKDTSVEEEKGKAPVFTV 3426
Query: 590 SKTNL---------ILESQLP-------EVEWFYNGKKLPHGHRYRTFHDFGIVILDILY 633
+N+ E++L +VEW++NGK L G R+RTF DFG VIL+I
Sbjct: 3427 PLSNIENLREGENAHFEARLTPTDDPNLKVEWYWNGKSLKAGSRFRTFCDFGFVILEISP 3486
Query: 634 CYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPE-----------LRRQPAG 682
Y E+SG Y CRA N YG VT AS+K K N+ILESQLP+ L
Sbjct: 3487 TYPEDSGEYLCRAYNNYGEAVTTASMKVQGKRNIILESQLPKGMEGTIDKIAALEGYSGT 3546
Query: 683 V----PDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS 738
V P++E G PP+FT+ L LSE AHFE LIPV D +M VE+ +NGKP+
Sbjct: 3547 VDTLTPEAESGNPPEFTTTPSDLI-LSENSSAHFECRLIPVNDSSMRVEWFHNGKPLLTG 3605
Query: 739 HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
R++T++ FG V+LEI G D G+YTC+A+N+ G+A +S L+
Sbjct: 3606 SRVKTINDFGFVILEIGGVYQRDAGLYTCKASNRHGEATVSCKLQ 3650
|
Source: Bombyx mori Species: Bombyx mori Genus: Bombyx Family: Bombycidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156900686|gb|ABU96746.1| Kettin1 protein [Helicoverpa armigera] | Back alignment and taxonomy information |
|---|
Score = 835 bits (2157), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/823 (53%), Positives = 556/823 (67%), Gaps = 63/823 (7%)
Query: 3 KATNSKGSATTSGTLKCLGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEET 62
KATNSKGSATTSG+L+C G K+IY +TQHP G AGLE V++ E A K +R S P+
Sbjct: 2761 KATNSKGSATTSGSLRCTGDKNIYFDTQHPQGKAGLEAVEQAEEARLSKSKRT-SVPDVE 2819
Query: 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
+ KP ++ P+ E +L E Q LHLE Q EPKNDPNL+ EW F GK L+ GSR K T+DFG
Sbjct: 2820 YPKPEWVGPVAAENQLIEGQALHLEGQGEPKNDPNLRNEWYFTGKVLKQGSRIKLTSDFG 2879
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQD 182
FVTLDLT+VY+RD GIYTC+A+N GE FTS+T++C++KE+LIERTQHPKG EGLEKIQ+
Sbjct: 2880 FVTLDLTDVYERDSGIYTCKAYNKRGEAFTSSTVFCTSKENLIERTQHPKGTEGLEKIQN 2939
Query: 183 LEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 242
LEESLRR+P PD + GRPP+FT+ FQ + ++SEG+IAH+EASLIP GDQ M +E+ YN
Sbjct: 2940 LEESLRREPGQKPDDDAGRPPEFTTVFQDIVDISEGQIAHYEASLIPTGDQRMVIEWFYN 2999
Query: 243 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQ 302
GK IEASHRIRTV+AFGMVVLEILGTK D+GVY+CRATN+WGQAEISV LECVDKSKGQ
Sbjct: 3000 GKSIEASHRIRTVYAFGMVVLEILGTKTTDSGVYSCRATNRWGQAEISVKLECVDKSKGQ 3059
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P+FT+HI+++EGLKDG SAHFECT+ PV+DP+LK+EW+HNG+P+ H R+K VSDFGFV
Sbjct: 3060 KPRFTTHIQNIEGLKDGQSAHFECTVVPVDDPDLKIEWYHNGQPLRHSTRIKTVSDFGFV 3119
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQ 422
V+DIAY Q+HD+GEYVCRA+NKYGEDFT+A I CFG+GGVYLDSLQP+SLA+IRELE+ Q
Sbjct: 3120 VLDIAYTQNHDTGEYVCRAYNKYGEDFTKANITCFGRGGVYLDSLQPDSLAKIRELESLQ 3179
Query: 423 GQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQG 482
G Q A A A PKFITQI DVT+L EGQSAHFEARL PV DPDL E F N
Sbjct: 3180 GMQQQAPAPASAVPPKFITQIQDVTKLAEGQSAHFEARLVPVDDPDLKVEWFYN------ 3233
Query: 483 QQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE-------------ARLTPVTDPDLV 529
+ + F I D+ E S +E A L + +L+
Sbjct: 3234 GKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECVATNKLGRDSTKATLKCTSKENLI 3293
Query: 530 VEWFYNGKKLPHG-----HRYRTFHDFGIVILDILYCYEENSG---VYECRATN----KY 577
++ +LP G + +T D I D+ EE G V+ +N +
Sbjct: 3294 LD-----SQLPRGMEGGLEKLQTLEDSMIRRKDVK--EEEERGKAPVFTVPLSNIDNLRE 3346
Query: 578 GSDVT-KASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYE 636
G + +A L NL +VEW++NGK L G R+RTF DFG VIL+I Y
Sbjct: 3347 GENAHFEARLTPTDDPNL-------KVEWYWNGKSLKAGSRFRTFCDFGFVILEISPTYP 3399
Query: 637 ENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPE-----------LRRQPAGV-- 683
E+SG Y CRA N YG VT A++K K N+ILESQLP+ L V
Sbjct: 3400 EDSGEYLCRAYNNYGEAVTTATMKVQGKRNIILESQLPKGMEGTIDKIAALEGYTGTVDS 3459
Query: 684 --PDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI 741
P++E G PP+FT+ L LSE AHFE LIPV D +M VE+ +NGKP+ R+
Sbjct: 3460 MTPEAETGNPPEFTTTPSDLI-LSENSSAHFECRLIPVNDSSMRVEWFHNGKPLLTGSRV 3518
Query: 742 RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784
+T++ FG V+LEI G D G+YTC+ATN+ G+A +S L+
Sbjct: 3519 KTINDFGFVILEIGGVYQRDAGLYTCKATNRHGEATVSCKLQV 3561
|
Source: Helicoverpa armigera Species: Helicoverpa armigera Genus: Helicoverpa Family: Noctuidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 805 | ||||||
| FB|FBgn0086906 | 18 | sls "sallimus" [Drosophila mel | 0.587 | 26.27 | 0.675 | 3.9e-262 | |
| WB|WBGene00004130 | 4488 | ketn-1 [Caenorhabditis elegans | 0.580 | 0.104 | 0.330 | 9e-80 | |
| UNIPROTKB|F1N757 | 34 | F1N757 "Uncharacterized protei | 0.285 | 6.764 | 0.337 | 3.6e-49 | |
| UNIPROTKB|Q8WZ42 | 34 | TTN "Titin" [Homo sapiens (tax | 0.285 | 6.764 | 0.341 | 1.9e-47 | |
| UNIPROTKB|F1PV45 | 35 | F1PV45 "Uncharacterized protei | 0.285 | 6.571 | 0.350 | 1.4e-45 | |
| MGI|MGI:98864 | 35 | Ttn "titin" [Mus musculus (tax | 0.285 | 6.571 | 0.341 | 5.1e-44 | |
| ZFIN|ZDB-GENE-030616-413 | 28 | ttnb "titin b" [Danio rerio (t | 0.289 | 8.321 | 0.330 | 1.5e-37 | |
| ZFIN|ZDB-GENE-030113-2 | 32 | ttna "titin a" [Danio rerio (t | 0.521 | 13.12 | 0.262 | 7e-32 | |
| UNIPROTKB|O97791 | 2000 | titin "Titin" [Oryctolagus cun | 0.285 | 0.115 | 0.333 | 2.8e-22 | |
| WB|WBGene00006820 | 8081 | unc-89 [Caenorhabditis elegans | 0.539 | 0.053 | 0.251 | 3.2e-30 |
| FB|FBgn0086906 sls "sallimus" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1721 (610.9 bits), Expect = 3.9e-262, Sum P(3) = 3.9e-262
Identities = 321/475 (67%), Positives = 380/475 (80%)
Query: 3 KATNSKGSATTSGTLKCLGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEET 62
KATNSKGSATTSGTLKC G K ++L+TQHP G AGLE VQE E LA +Y + + PE
Sbjct: 2829 KATNSKGSATTSGTLKCTGGKTMFLDTQHPQGEAGLEAVQETEEELANRYTSKTTKPETQ 2888
Query: 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
+ PV+ PL+ EF L EAQP+HLEA VEPK DPNL IEW FNGK L GSRFK T++FG
Sbjct: 2889 YPPPVWTKPLQAEFHLSEAQPIHLEANVEPKEDPNLFIEWYFNGKMLNHGSRFKMTSEFG 2948
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQD 182
FVT+D+ EVY RDQGIYTC+A+N AGE FTSTTI+CS+KE++IE TQHPKG EGLE+IQD
Sbjct: 2949 FVTMDMIEVYARDQGIYTCKAYNKAGEAFTSTTIFCSSKENIIESTQHPKGAEGLEQIQD 3008
Query: 183 LEESLRRQPAGVPDSED-GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY 241
LE+SLR+ P+ D G PP+FT+EF +++++ EGE+AHFEA+LIPVGDQ+M +E+ Y
Sbjct: 3009 LEDSLRKD-GSKPEQPDLGIPPRFTTEFVNIADIGEGELAHFEANLIPVGDQSMVIEWFY 3067
Query: 242 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKG 301
NGK +EASHR+RT++AFG V LE+LGTKIEDTG YTCRATNK G AEIS NLECVDK +G
Sbjct: 3068 NGKVLEASHRVRTIYAFGTVALEVLGTKIEDTGTYTCRATNKHGTAEISCNLECVDKPRG 3127
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
Q P+FTSHI+ LEGLKDG SAHFECTL PVNDP+LKVEW+HNGK + H NR+K VSDFG+
Sbjct: 3128 QKPRFTSHIQPLEGLKDGQSAHFECTLIPVNDPDLKVEWYHNGKLMRHSNRIKTVSDFGY 3187
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENX 421
VV+DI+Y+Q HDSGEYVCRAWNKYGEDFTR T+ C G+GGV+ DSLQP+SL RIRELE
Sbjct: 3188 VVLDISYLQDHDSGEYVCRAWNKYGEDFTRTTLNCGGRGGVFYDSLQPDSLQRIRELECP 3247
Query: 422 XXXXXXXXXXXXXXXXKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSN 476
KFITQI DVT+L EGQSAHFEARLTP+TDPDLV E + N
Sbjct: 3248 QGQQADTSAPLVAEPPKFITQIVDVTKLVEGQSAHFEARLTPITDPDLVVEWYFN 3302
|
|
| WB|WBGene00004130 ketn-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 578 (208.5 bits), Expect = 9.0e-80, Sum P(3) = 9.0e-80
Identities = 162/490 (33%), Positives = 229/490 (46%)
Query: 3 KATNSKGSATTSGTLKCLGQKDIYLETQHP--MGAAGLEKVQEVEHALAGKYQRQPSGPE 60
+A N G A TS L C ++ I TQ P M AG ++ E+E A + R+ + P+
Sbjct: 3123 RAVNRVGEAVTSTKLTCTPKEGIISATQLPERMANAG-RRIAEIE---APRPAREDA-PD 3177
Query: 61 ETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTAD 120
P F L +L E Q HLE QV P DP L IEW NG+P+ +R K D
Sbjct: 3178 ADHGPPKFTSALAGPPELQEGQQAHLECQVTPVADPRLVIEWFHNGQPVNHTNRMKAIHD 3237
Query: 121 FGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKI 180
FGFV L LT +D G +TCRA N G ST + + Q E E+I
Sbjct: 3238 FGFVVLQLTPAEPQDSGTWTCRATNQHGSDEVSTELKVVGGGGVSYEWQSTA--ERKERI 3295
Query: 181 QDLEESLRR--QPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE 238
+LE+ + R + +P + D P F+ L L+E + F L P+GD T+ V+
Sbjct: 3296 TELEDWIHRPKEDLNLP-AVDYPAPSFSQGLTDLGQLNEADATAFVCVLEPIGDPTLRVQ 3354
Query: 239 FLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
+ +NG PI S+RI + FG+ L I D G Y C ATN G A SV V+
Sbjct: 3355 WEHNGHPIPYSNRISCTNEFGVATLLIKHLIAADAGEYKCVATNVKGSAT-SVGKIAVES 3413
Query: 299 SKG-QPPKFTSH-IKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV 356
S P+ + S+E + +GDS H EC +TP+NDP L VEW NG P+ +R K
Sbjct: 3414 STQIDAPQVVQQLVDSVENILEGDSIHLECRVTPINDPRLHVEWLRNGAPLPEASRFKPT 3473
Query: 357 SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGV-YLDSL---QPESL 412
+FGFV +DI Y D+G+Y N GE ++ I + + Y Q +SL
Sbjct: 3474 FEFGFVSLDILYAYPEDNGDYELVVRNDKGEARSKTKITVLPRPSLDYTSQTHGNQQDSL 3533
Query: 413 -ARIRELENXXXXXXXXXXXXXXXXX--KFITQISDVTQLKEGQSAHFEARLTPVTDPDL 469
+ ++ +F TQ+ ++ L EG+ FE ++ P+ DP L
Sbjct: 3534 ESHFKQHSQAKLQLTANDIYNESDKRAPEFRTQLQNIGVL-EGEFCRFETQVAPINDPYL 3592
Query: 470 VCELFSNFFP 479
E F + P
Sbjct: 3593 KVEWFKDKKP 3602
|
|
| UNIPROTKB|F1N757 F1N757 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 313 (115.2 bits), Expect = 3.6e-49, Sum P(6) = 3.6e-49
Identities = 80/237 (33%), Positives = 116/237 (48%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTA 119
+E KP F L +L P H E ++ P DP + +EW+ +GKPLE +R +
Sbjct: 1684 KEKQQKPFFKKKLT-SLRLKRFGPAHFECRLTPIGDPTMVVEWLHDGKPLEAANRLRMIN 1742
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEK 179
+FG+ +LD Y RD G+ TCRA N G TS T+ ++SL+E +Q P+G +GL++
Sbjct: 1743 EFGYCSLDYAVAYSRDSGVITCRATNKYGTDHTSATLIVKDEKSLVEESQLPEGRKGLQR 1802
Query: 180 IQDLEESLRRQP-AGVP-DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTV 237
I++LE GV D ++ + P F + EGE A F + G V
Sbjct: 1803 IEELERMAHEGALTGVTTDQKEKQKPDIVL-FPEPVRVLEGETARFRCRV--TGYPQPKV 1859
Query: 238 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+ NG+ I S R R V G+ L+I+ K DTG A N G + V LE
Sbjct: 1860 NWYLNGQLIRKSKRFR-VRYDGIHYLDIVDCKSYDTGEVKVTAENPEGVIDHKVKLE 1915
|
|
| UNIPROTKB|Q8WZ42 TTN "Titin" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 312 (114.9 bits), Expect = 1.9e-47, Sum P(6) = 1.9e-47
Identities = 81/237 (34%), Positives = 116/237 (48%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTA 119
+E KP F L +L P H E ++ P DP + +EW+ +GKPLE +R +
Sbjct: 1697 KEKQQKPFFKKKLT-SLRLKRFGPAHFECRLTPIGDPTMVVEWLHDGKPLEAANRLRMIN 1755
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEK 179
+FG+ +LD Y RD GI TCRA N G TS T+ ++SL+E +Q P+G +GL++
Sbjct: 1756 EFGYCSLDYGVAYSRDSGIITCRATNKYGTDHTSATLIVKDEKSLVEESQLPEGRKGLQR 1815
Query: 180 IQDLEESLRRQP-AGVP-DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTV 237
I++LE GV D ++ + P + + EGE A F + G V
Sbjct: 1816 IEELERMAHEGALTGVTTDQKEKQKPDIVL-YPEPVRVLEGETARFRCRV--TGYPQPKV 1872
Query: 238 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+ NG+ I S R R V G+ L+I+ K DTG A N G E V LE
Sbjct: 1873 NWYLNGQLIRKSKRFR-VRYDGIHYLDIVDCKSYDTGEVKVTAENPEGVIEHKVKLE 1928
|
|
| UNIPROTKB|F1PV45 F1PV45 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 319 (117.4 bits), Expect = 1.4e-45, Sum P(7) = 1.4e-45
Identities = 83/237 (35%), Positives = 116/237 (48%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTA 119
+E KP F L +L P H E ++ P DP + +EW+ +GKPLE +R +
Sbjct: 1696 KEKQQKPFFKKKLT-SLRLKRFGPAHFECRLTPIGDPTMVVEWLHDGKPLEAANRLRMIN 1754
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEK 179
+FG+ +LD Y RD GI TCRA N G TS T+ ++SL+E +Q P+G EGL++
Sbjct: 1755 EFGYCSLDYGVAYSRDSGIITCRATNKYGTDHTSATLIVKDEKSLVEESQLPEGREGLQR 1814
Query: 180 IQDLEESLRRQP-AGVP-DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTV 237
I++LE GV D ++ + P F + EGE A F + G V
Sbjct: 1815 IEELERMAHEGALTGVTTDQKEKQKPDIVL-FPEPVRVLEGETARFRCRV--TGYPQPKV 1871
Query: 238 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+ NG+ I S R R V G+ L+I+ K DTG A N G E V LE
Sbjct: 1872 NWYLNGQLIRKSKRFR-VRYDGIHYLDIVDCKSYDTGEVKVTAENPEGVIEHKVKLE 1927
|
|
| MGI|MGI:98864 Ttn "titin" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 315 (115.9 bits), Expect = 5.1e-44, Sum P(7) = 5.1e-44
Identities = 81/237 (34%), Positives = 116/237 (48%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTA 119
+E KP F L +L P H E ++ P DP + +EW+ +GKPLE +R +
Sbjct: 1703 KEKQQKPFFKKKLT-SLRLKRFGPAHFECRLTPIGDPTMVVEWLHDGKPLEAANRLRMIN 1761
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEK 179
+FG+ +LD Y RD G+ TCRA N G TS T+ ++SL+E +Q P G++GL++
Sbjct: 1762 EFGYCSLDYGAAYSRDSGVITCRATNKYGTDHTSATLIVKDEKSLVEESQLPDGKKGLQR 1821
Query: 180 IQDLEESLRRQP-AGVP-DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTV 237
I++LE GV D ++ + P F + EGE A F + G V
Sbjct: 1822 IEELERMAHEGALTGVTTDQKEKQKPDIVL-FPEPVRVLEGETARFRCRV--TGYPQPKV 1878
Query: 238 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+ NG+ I S R R V G+ L+I+ K DTG A N G E V LE
Sbjct: 1879 NWYLNGQLIRKSKRFR-VRYDGIHYLDIVDCKSYDTGEVKVTAENPEGVTEHKVKLE 1934
|
|
| ZFIN|ZDB-GENE-030616-413 ttnb "titin b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 288 (106.4 bits), Expect = 1.5e-37, Sum P(7) = 1.5e-37
Identities = 80/242 (33%), Positives = 116/242 (47%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTA 119
+E KP F L +L P H E ++ P DP + +EW+ +GKPL +R +
Sbjct: 1002 KEKQQKPHFKKKLT-SVRLKRFGPAHFECRLTPIGDPTMIVEWLHDGKPLAAANRLRMVN 1060
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEK 179
+FG+ +LD Y RD G+ TCRA N G TS T+ ++SL+E TQ P+G G ++
Sbjct: 1061 EFGYCSLDYEAAYSRDSGVITCRATNKFGVDQTSATLIVKDEKSLVEETQLPEGRRG-QR 1119
Query: 180 IQDLEESLRRQ-PAGVP--DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMT 236
I ++E P+GV D+ + P+ + + + EGE A F + G T
Sbjct: 1120 IDEIERIAHEGGPSGVTGDDNLEKTKPEIVLLPEPV-RVMEGETAKFRCRV--TGYPTPK 1176
Query: 237 VEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 296
V + NG I S R R + G+ LEI+ TK D+G A N G E V E
Sbjct: 1177 VNWYLNGLLIRKSKRFR-LQFDGIHYLEIVDTKSYDSGDVKVSAENPEGVTEHVVKFEIQ 1235
Query: 297 DK 298
K
Sbjct: 1236 QK 1237
|
|
| ZFIN|ZDB-GENE-030113-2 ttna "titin a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 306 (112.8 bits), Expect = 7.0e-32, Sum P(5) = 7.0e-32
Identities = 119/454 (26%), Positives = 193/454 (42%)
Query: 37 GLEKVQEVEHALAGKYQRQPSGPEETFAKPVFIVPLKPE-FKLGEAQPLHLEAQVEPKND 95
G + V + A + E KPVF+ KP F+ E Q + +V +
Sbjct: 1200 GRSPARSVSRSPARRLDDTDESQLERLYKPVFVQ--KPSSFRCSEGQTARFDLKVVGRPM 1257
Query: 96 PNLKIEWIFNGKPLELGSRFKTTA-DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTST 154
P+ W +G+ + K + G ++ + +D G +T A N AG+T S
Sbjct: 1258 PDTF--WFHSGQQVVNDYTHKIVVKEDGTQSMIVVPAMPQDSGEWTVVAQNRAGKTTVSM 1315
Query: 155 TIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRR---QPAG--VPDSEDGRPPQFTS-- 207
T+ KE+L+ P+ E L+ I E SL + G +PD + S
Sbjct: 1316 TLTVEAKENLVR----PQFIEKLKNISVKEGSLVELAVKAIGNPLPDIVWLKNSDIISPH 1371
Query: 208 EFQHLS-NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH-RIRTVHAFGMVVLE- 264
++ H+ ++G+ AHF+ D N + + R+ + V E
Sbjct: 1372 KYPHIKIEGAKGQ-AHFQIPQTSGSDSAWYTATAINKAGRDTTRCRVNVEVEYTEPVPER 1430
Query: 265 --IL--GT-KIEDTGVYTCRATN-KWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKD 318
I+ GT K +D + ++GQ + + DK K Q P F + S+ +K
Sbjct: 1431 RLIIPKGTYKAKDVAPPEIEPLHLRYGQEQWEEG-DLYDKEKQQKPHFKKKLTSVR-MKR 1488
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
HFEC LTP+ DP + VEW H+GKP+ NR++M+++FG+ +D S DSG
Sbjct: 1489 FGPVHFECRLTPIGDPTMVVEWLHDGKPLEAANRLRMINEFGYCSLDYEVAYSRDSGVIT 1548
Query: 379 CRAWNKYGEDFTRATIKCFGKGGVYLDSLQPES--LARIRELENXXXXXXXXXXXXXXXX 436
CRA NK+G D T AT+ + + DS PE + R+ E+E
Sbjct: 1549 CRATNKFGADQTSATLIVKDEKSLVEDSQLPEGRKVQRMDEMERIAHEGGPSGVTGDDMS 1608
Query: 437 XKF---ITQISDVTQLKEGQSAHFEARLTPVTDP 467
K I + + ++ EG++A + R+T P
Sbjct: 1609 EKSKPEIVLLPEPIRVFEGETAKYRCRVTGYPTP 1642
|
|
| UNIPROTKB|O97791 titin "Titin" [Oryctolagus cuniculus (taxid:9986)] | Back alignment and assigned GO terms |
|---|
Score = 309 (113.8 bits), Expect = 2.8e-22, Sum P(2) = 2.8e-22
Identities = 79/237 (33%), Positives = 116/237 (48%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTA 119
+E KP F L +L P H E ++ P DP + +EW+ +GKPLE +R +
Sbjct: 1644 KEKQQKPFFKKKLS-SLRLKRFGPAHFECRLTPIGDPTMVVEWLHDGKPLEAANRLRMIN 1702
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEK 179
+FG+ +LD Y RD G+ TCRA N G TS T+ ++SL+E +Q P+G +GL++
Sbjct: 1703 EFGYCSLDYGVAYSRDSGVITCRATNKYGTDHTSATLIVKDEKSLVEESQLPEGRKGLQR 1762
Query: 180 IQDLEESLRRQP-AGVP-DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTV 237
I++LE GV D ++ + P + + EGE A F + G +
Sbjct: 1763 IEELERMAHEGALTGVTADQKEKQKPDIVL-YPEPVRVLEGETARFRCRV--TGYPQPKL 1819
Query: 238 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+ NG+ I S R R V G+ L+I+ K DTG A N G E V LE
Sbjct: 1820 NWYLNGQLIRKSKRFR-VRYDGIHYLDIVDCKSYDTGEVKVTAENPEGVIEHKVKLE 1875
|
|
| WB|WBGene00006820 unc-89 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 295 (108.9 bits), Expect = 3.2e-30, Sum P(5) = 3.2e-30
Identities = 117/466 (25%), Positives = 194/466 (41%)
Query: 1 MVKATNSKGSATTSGTLKCLGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPE 60
+++ GS T +K D T AG K + V KY + E
Sbjct: 3627 VIEKKGENGSHTL--VIKDTNNADFGKYTCQATNKAG--KDETVGELKIPKYSFEKQTAE 3682
Query: 61 ETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTA- 119
E KP+FI PLK F + E + LE +V ++ P +K + N +P+E+G +
Sbjct: 3683 EV--KPLFIEPLKETFAV-EGDTVVLECKVNKESHPQIK--FFKNDQPVEIGQHMQLEVL 3737
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEK 179
+ G + L + D G Y C A N+AG+ T+ + + E G+ LE+
Sbjct: 3738 EDGNIKLTIQNAKKEDVGAYRCEAVNVAGKANTNADLKIQFAAKVEEHVTDESGQ--LEE 3795
Query: 180 IQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEF 239
I E ++ + D+ G P +F E ++E + A + + G+ +++
Sbjct: 3796 IGQFE-TVGDTASSKTDTGRGAP-EFV-ELLRSCTVTEKQQAILKCKV--KGEPRPKIKW 3850
Query: 240 LYNGKPIEASHRIRTVHAF-GMVVLEILGTKIEDTGVYTCRATNKWGQA----EISVNLE 294
GK +E S R+R H G + L D G Y C A N++G A I V LE
Sbjct: 3851 TKEGKEVEMSARVRAEHKDDGTLTLTFDNVTQADAGEYRCEAENEYGSAWTEGPIIVTLE 3910
Query: 295 CVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVK 354
K G+ P F +K + G++A E ++ P+ V+W+ NG+ + +RVK
Sbjct: 3911 GAPKIDGEAPDFLQPVKPAV-VTVGETAVLEGKIS--GKPKPSVKWYKNGEELKPSDRVK 3967
Query: 355 MVS-DFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLA 413
+ + D G + + + D EY C A N++G+ ++ T+ V + S
Sbjct: 3968 IENLDDGTQRLTVTNAKLDDMDEYRCEASNEFGDVWSDVTLTVKEPAQVAPGFFKELSAI 4027
Query: 414 RIRELENXXXXXXXXXXXXXXXXXKFITQISDVTQLKEGQSAHFEA 459
+++E E K D T LKE + HFE+
Sbjct: 4028 QVKETETAKFECKVSGTKPDVKWFK------DGTPLKEDKRVHFES 4067
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 805 | |||
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 6e-17 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 2e-15 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 5e-14 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 5e-14 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 2e-11 | |
| pfam07679 | 90 | pfam07679, I-set, Immunoglobulin I-set domain | 4e-11 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 2e-10 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 2e-10 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 1e-07 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 1e-07 | |
| cd05724 | 86 | cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like | 1e-07 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 1e-06 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 2e-06 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 2e-06 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 2e-06 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 2e-06 | |
| cd05895 | 76 | cd05895, Ig_Pro_neuregulin-1, Immunoglobulin (Ig)- | 2e-06 | |
| cd05750 | 75 | cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li | 2e-06 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 6e-06 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 6e-06 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 7e-06 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 7e-06 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 9e-06 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 1e-05 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 1e-05 | |
| smart00410 | 85 | smart00410, IG_like, Immunoglobulin like | 2e-05 | |
| smart00409 | 85 | smart00409, IG, Immunoglobulin | 2e-05 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 3e-05 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 5e-05 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 8e-05 | |
| cd00096 | 74 | cd00096, Ig, Immunoglobulin domain | 1e-04 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 1e-04 | |
| smart00408 | 63 | smart00408, IGc2, Immunoglobulin C-2 Type | 2e-04 | |
| cd05737 | 92 | cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob | 3e-04 | |
| pfam06582 | 29 | pfam06582, DUF1136, Repeat of unknown function (DU | 4e-04 | |
| cd05762 | 98 | cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like | 0.001 | |
| cd04978 | 76 | cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin | 0.002 | |
| cd04978 | 76 | cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin | 0.002 | |
| cd05728 | 85 | cd05728, Ig4_Contactin-2-like, Fourth Ig domain of | 0.002 | |
| cd05728 | 85 | cd05728, Ig4_Contactin-2-like, Fourth Ig domain of | 0.003 | |
| cd05724 | 86 | cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like | 0.004 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 6e-17
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTFHDFGIV 554
PKF + DV ++EG+SA F VT DPD V WF +G+ L R++ ++ G
Sbjct: 1 PKFTQKPKDVE-VQEGESARFTCT---VTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTY 56
Query: 555 ILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L I ++ G Y C ATN G A L
Sbjct: 57 TLTISNVQPDDEGKYTCVATNSAGEAEASAELT 89
|
Length = 90 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-15
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 304 PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVV 363
PKFT K +E +++G+SA F CT+T DP+ V WF +G+P+ +R K+ + G
Sbjct: 1 PKFTQKPKDVE-VQEGESARFTCTVT--GDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYT 57
Query: 364 MDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ I+ VQ D G+Y C A N GE A +
Sbjct: 58 LTISNVQPDDEGKYTCVATNSAGEAEASAELT 89
|
Length = 90 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 5e-14
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 203 PQFTSEFQHLSNL--SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGM 260
P+FT Q ++ EGE A F ++ GD TV + +G+P+ +S R + + G
Sbjct: 1 PKFT---QKPKDVEVQEGESARFTCTVT--GDPDPTVSWFKDGQPLRSSDRFKVTYEGGT 55
Query: 261 VVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
L I + +D G YTC ATN G+AE S L
Sbjct: 56 YTLTISNVQPDDEGKYTCVATNSAGEAEASAELT 89
|
Length = 90 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 5e-14
Identities = 33/94 (35%), Positives = 48/94 (51%), Gaps = 7/94 (7%)
Query: 692 PQFTSEFQHLSNL--SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGM 749
P+FT Q ++ EGE A F ++ GD TV + +G+P+ +S R + + G
Sbjct: 1 PKFT---QKPKDVEVQEGESARFTCTVT--GDPDPTVSWFKDGQPLRSSDRFKVTYEGGT 55
Query: 750 VVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
L I + +D G YTC ATN G+AE S L
Sbjct: 56 YTLTISNVQPDDEGKYTCVATNSAGEAEASAELT 89
|
Length = 90 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 2e-11
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 3/90 (3%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVT 125
P F K ++ E + V DP+ + W +G+PL RFK T + G T
Sbjct: 1 PKFTQKPKD-VEVQEGESARFTCTVT--GDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYT 57
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTSTT 155
L ++ V D+G YTC A N AGE S
Sbjct: 58 LTISNVQPDDEGKYTCVATNSAGEAEASAE 87
|
Length = 90 |
| >gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 4e-11
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
P V WF +G+ L R++ ++ G L I ++ G Y C ATN G A L
Sbjct: 30 PTVSWFKDGQPLRSSDRFKVTYEGGTYTLTISNVQPDDEGKYTCVATNSAGEAEASAELT 89
|
Length = 90 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-10
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNG-KPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEY 377
G+S C + P +V W+ G K + R + + I+ V DSG Y
Sbjct: 9 GESVTLSCEAS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTY 66
Query: 378 VCRAWNKYGEDFTRATIK 395
C A N G + T+
Sbjct: 67 TCAATNSSGSASSGTTLT 84
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 2e-10
Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNG-KPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEY 377
G+S C + P +V W+ G K + R + + I+ V DSG Y
Sbjct: 9 GESVTLSCEAS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTY 66
Query: 378 VCRAWNKYGEDFTRATIK 395
C A N G + T+
Sbjct: 67 TCAATNSSGSASSGTTLT 84
|
Length = 85 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-07
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 91 EPKNDPNLKIEWIFNG-KPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGE 149
E P ++ W G K L RF + TL ++ V D G YTC A N +G
Sbjct: 17 EASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGS 76
Query: 150 TFTSTTIY 157
+ TT+
Sbjct: 77 ASSGTTLT 84
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-07
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 91 EPKNDPNLKIEWIFNG-KPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGE 149
E P ++ W G K L RF + TL ++ V D G YTC A N +G
Sbjct: 17 EASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGS 76
Query: 150 TFTSTTIY 157
+ TT+
Sbjct: 77 ASSGTTLT 84
|
Length = 85 |
| >gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-07
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN-RVKMVSDFGFVVMDIAYVQSHDSGEY 377
G+ A EC+ P PE V W +G+P+ N RV++V D + IA + D G Y
Sbjct: 11 GEMAVLECS-PPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLL---IAEARKSDEGTY 66
Query: 378 VCRAWNKYGEDFTRA 392
C A N GE + A
Sbjct: 67 KCVATNMVGERESAA 81
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 46.7 bits (110), Expect = 1e-06
Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 6/76 (7%)
Query: 322 AHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD----IAYVQSHDSGEY 377
C + P + W NGKP+ ++ S G I+ V DSG Y
Sbjct: 1 VTLTCLAS--GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTY 58
Query: 378 VCRAWNKYGEDFTRAT 393
C A N G T
Sbjct: 59 TCVASNSAGTVSASVT 74
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-06
Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 231 GDQTMTVEFLYNG-KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 289
G V + G K + S R + L I ED+G YTC ATN G A
Sbjct: 20 GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASS 79
Query: 290 SVNLE 294
L
Sbjct: 80 GTTLT 84
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-06
Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 720 GDQTMTVEFLYNG-KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 778
G V + G K + S R + L I ED+G YTC ATN G A
Sbjct: 20 GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASS 79
Query: 779 SVNLE 783
L
Sbjct: 80 GTTLT 84
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-06
Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 231 GDQTMTVEFLYNG-KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 289
G V + G K + S R + L I ED+G YTC ATN G A
Sbjct: 20 GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASS 79
Query: 290 SVNLE 294
L
Sbjct: 80 GTTLT 84
|
Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-06
Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 720 GDQTMTVEFLYNG-KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 778
G V + G K + S R + L I ED+G YTC ATN G A
Sbjct: 20 GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATNSSGSASS 79
Query: 779 SVNLE 783
L
Sbjct: 80 GTTLT 84
|
Length = 85 |
| >gnl|CDD|143303 cd05895, Ig_Pro_neuregulin-1, Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 2e-06
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 334 PELKVEWFHNGKPIFHKNR----VKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDF 389
P L+ +WF NGK I KN+ +K+ + I+ D+GEY C +K G D
Sbjct: 12 PSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDS 71
Query: 390 TRATI 394
A +
Sbjct: 72 VTANV 76
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. Length = 76 |
| >gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-06
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 334 PELKVEWFHNGKPIFHKNRVKMV---SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFT 390
P L+ +WF +GK + KN+ + + + + I + DSGEY C N G D
Sbjct: 12 PSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTV 71
Query: 391 RATI 394
A +
Sbjct: 72 TANV 75
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 44.4 bits (104), Expect = 6e-06
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 231 GDQTMTVEFLYNGKPIEASHRIRTVHAFGMV----VLEILGTKIEDTGVYTCRATNKWGQ 286
G T+ +L NGKP+ +S R + G L I +ED+G YTC A+N G
Sbjct: 9 GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGT 68
Query: 287 AEISVN 292
SV
Sbjct: 69 VSASVT 74
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 44.4 bits (104), Expect = 6e-06
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 720 GDQTMTVEFLYNGKPIEASHRIRTVHAFGMV----VLEILGTKIEDTGVYTCRATNKWGQ 775
G T+ +L NGKP+ +S R + G L I +ED+G YTC A+N G
Sbjct: 9 GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGT 68
Query: 776 AEISVN 781
SV
Sbjct: 69 VSASVT 74
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 7e-06
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Query: 509 KEGQSAHFEARLTPVTDPDLVVEWFYNG-KKLPHGHRYRTFHDFGIVILDILYCYEENSG 567
KEG+S + P V W+ G K L R+ L I E+SG
Sbjct: 7 KEGESVTLSCEAS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSG 64
Query: 568 VYECRATNKYGSDVTKASLK 587
Y C ATN GS + +L
Sbjct: 65 TYTCAATNSSGSASSGTTLT 84
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 7e-06
Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
Query: 509 KEGQSAHFEARLTPVTDPDLVVEWFYNG-KKLPHGHRYRTFHDFGIVILDILYCYEENSG 567
KEG+S + P V W+ G K L R+ L I E+SG
Sbjct: 7 KEGESVTLSCEAS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSG 64
Query: 568 VYECRATNKYGSDVTKASLK 587
Y C ATN GS + +L
Sbjct: 65 TYTCAATNSSGSASSGTTLT 84
|
Length = 85 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 44.0 bits (103), Expect = 9e-06
Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 93 KNDPNLKIEWIFNGKPLELGS----RFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAG 148
P I W+ NGKPL R G TL ++ V D G YTC A N AG
Sbjct: 8 SGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAG 67
Query: 149 ETFTSTT 155
S T
Sbjct: 68 TVSASVT 74
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 1e-05
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 236 TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 285
+ +L +GKP+ S+R + L I +ED+G+YTC A N G
Sbjct: 18 NITWLKDGKPLPESNRFVASGST----LTIKSVSLEDSGLYTCVAENSAG 63
|
Length = 63 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 1e-05
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 725 TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 774
+ +L +GKP+ S+R + L I +ED+G+YTC A N G
Sbjct: 18 NITWLKDGKPLPESNRFVASGST----LTIKSVSLEDSGLYTCVAENSAG 63
|
Length = 63 |
| >gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-05
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNG-KKLPHGHRYRTFHDFGIVILDILYCYE 636
G VT L C + + PEV W+ G K L R+ L I
Sbjct: 9 GESVT---LSCEASGSP-----PPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60
Query: 637 ENSGVYECRATNKYGSDVTKASLK 660
E+SG Y C ATN GS + +L
Sbjct: 61 EDSGTYTCAATNSSGSASSGTTLT 84
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85 |
| >gnl|CDD|214652 smart00409, IG, Immunoglobulin | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-05
Identities = 26/84 (30%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNG-KKLPHGHRYRTFHDFGIVILDILYCYE 636
G VT L C + + PEV W+ G K L R+ L I
Sbjct: 9 GESVT---LSCEASGSP-----PPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTP 60
Query: 637 ENSGVYECRATNKYGSDVTKASLK 660
E+SG Y C ATN GS + +L
Sbjct: 61 EDSGTYTCAATNSSGSASSGTTLT 84
|
Length = 85 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 42.5 bits (99), Expect = 3e-05
Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 584 ASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIV----ILDILYCYEENS 639
+L C++ P + W NGK LP R G L I E+S
Sbjct: 1 VTLTCLASGP-----PPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDS 55
Query: 640 GVYECRATNKYGSDVTKAS 658
G Y C A+N G+ +
Sbjct: 56 GTYTCVASNSAGTVSASVT 74
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 5e-05
Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 6/68 (8%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
G S C P + W +GKP+ NR + I V DSG Y
Sbjct: 2 GQSVTLTCPAEGNPVPN--ITWLKDGKPLPESNRFVASGST----LTIKSVSLEDSGLYT 55
Query: 379 CRAWNKYG 386
C A N G
Sbjct: 56 CVAENSAG 63
|
Length = 63 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 8e-05
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVY 569
EGQS P+ + W +GK LP +R+ + I + E+SG+Y
Sbjct: 1 EGQSVTLTCPAEGNPVPN--ITWLKDGKPLPESNRF-VASGSTLTIKSVS---LEDSGLY 54
Query: 570 ECRATNKYG 578
C A N G
Sbjct: 55 TCVAENSAG 63
|
Length = 63 |
| >gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain | Back alignment and domain information |
|---|
Score = 40.9 bits (95), Expect = 1e-04
Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 525 DPDLVVEWFYNGKKLPHGHRYRTFHDFGIV----ILDILYCYEENSGVYECRATNKYGSD 580
P + W NGK LP R G L I E+SG Y C A+N G+
Sbjct: 10 PPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGTV 69
Query: 581 VTKAS 585
+
Sbjct: 70 SASVT 74
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 1e-04
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 637
G VT L C ++ N + P + W +GK LP +R+ + I + E
Sbjct: 2 GQSVT---LTCPAEGNPV-----PNITWLKDGKPLPESNRF-VASGSTLTIKSVS---LE 49
Query: 638 NSGVYECRATNKYG 651
+SG+Y C A N G
Sbjct: 50 DSGLYTCVAENSAG 63
|
Length = 63 |
| >gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 2e-04
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 82 QPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTC 141
Q + L E PN I W+ +GKPL +RF + TL + V D G+YTC
Sbjct: 3 QSVTLTCPAEGNPVPN--ITWLKDGKPLPESNRFVASGS----TLTIKSVSLEDSGLYTC 56
Query: 142 RAWNLAG 148
A N AG
Sbjct: 57 VAENSAG 63
|
Length = 63 |
| >gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 3e-04
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 327 TLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG-FVVMDIAYVQSHDSGEYVCRAWNKY 385
T T DP+ +V W N + + + + + G + + I V S DSG+Y NKY
Sbjct: 22 TCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKY 81
Query: 386 GEDFTRATI 394
G + T+
Sbjct: 82 GGETVDVTV 90
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92 |
| >gnl|CDD|219093 pfam06582, DUF1136, Repeat of unknown function (DUF1136) | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 4e-04
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 164 LIERTQHPKGEEGLEKIQDLEESLRRQPAGVP 195
+I TQHP E LEKIQ+LE+ R Q P
Sbjct: 1 IILDTQHP---ESLEKIQELEDPSRYQRPEEP 29
|
This family consists of several eukaryote specific repeats of unknown function. This repeat seems to always be found with pfam00047. Length = 29 |
| >gnl|CDD|143239 cd05762, Ig8_MLCK, Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK) | Back alignment and domain information |
|---|
Score = 38.8 bits (90), Expect = 0.001
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 230 VGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 289
G Q +T ++ K I+ I+ + L I + E G YT NK G +
Sbjct: 25 TGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLGSRQA 84
Query: 290 SVNLECVDKSKGQPP 304
VNL VDK PP
Sbjct: 85 QVNLTVVDKP--DPP 97
|
Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has been suggested MLCK plays a role in cardiomyocyte differentiation and contraction through regulation of nonmuscle myosin II. Length = 98 |
| >gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.002
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 218 GEIAHF--EASLIPVGDQTMTVEFLYNGKPIE--ASHRIRTVHAFGMVVLEILGTKIEDT 273
GE EA IP T+ + NG PIE R V G ++L + + DT
Sbjct: 1 GETGRLDCEAEGIP----QPTITWRLNGVPIEELPPDPRRRVDG-GTLILSNV--QPNDT 53
Query: 274 GVYTCRATNKWGQAEISVNLECV 296
VY C A+N G + + V
Sbjct: 54 AVYQCNASNVHGYLLANAFVHVV 76
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76 |
| >gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.002
Identities = 25/83 (30%), Positives = 34/83 (40%), Gaps = 11/83 (13%)
Query: 707 GEIAHF--EASLIPVGDQTMTVEFLYNGKPIE--ASHRIRTVHAFGMVVLEILGTKIEDT 762
GE EA IP T+ + NG PIE R V G ++L + + DT
Sbjct: 1 GETGRLDCEAEGIP----QPTITWRLNGVPIEELPPDPRRRVDG-GTLILSNV--QPNDT 53
Query: 763 GVYTCRATNKWGQAEISVNLECV 785
VY C A+N G + + V
Sbjct: 54 AVYQCNASNVHGYLLANAFVHVV 76
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76 |
| >gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Score = 37.6 bits (87), Expect = 0.002
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 8/78 (10%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVS-DFGFVVMDIAYVQSHDSGEY 377
G S +EC + +P W NG+P+ +NR+++ + D + ++ DSG Y
Sbjct: 14 GSSLRWECKAS--GNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLS-----DSGMY 66
Query: 378 VCRAWNKYGEDFTRATIK 395
C A NK+G + A +
Sbjct: 67 QCVAENKHGTIYASAELA 84
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85 |
| >gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Score = 37.2 bits (86), Expect = 0.003
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 601 PEVEWFYNGKKLPHGHR-YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
P W NG+ L +R D I L + +SG+Y+C A NK+G+ A L
Sbjct: 29 PAYRWLKNGQPLASENRIEVEAGDLRITKLSL-----SDSGMYQCVAENKHGTIYASAEL 83
Query: 660 K 660
Sbjct: 84 A 84
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85 |
| >gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.004
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 92 PKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGE 149
P+ P + W +G+PL L + D G L + E D+G Y C A N+ GE
Sbjct: 21 PRGHPEPTVSWRKDGQPLNLDNERVRIVDDG--NLLIAEARKSDEGTYKCVATNMVGE 76
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 805 | |||
| KOG3513|consensus | 1051 | 100.0 | ||
| KOG3513|consensus | 1051 | 100.0 | ||
| KOG4221|consensus | 1381 | 100.0 | ||
| KOG4222|consensus | 1281 | 100.0 | ||
| KOG4221|consensus | 1381 | 100.0 | ||
| KOG4222|consensus | 1281 | 100.0 | ||
| KOG4194|consensus | 873 | 99.96 | ||
| KOG4194|consensus | 873 | 99.95 | ||
| PHA02785 | 326 | IL-beta-binding protein; Provisional | 99.95 | |
| PHA02785 | 326 | IL-beta-binding protein; Provisional | 99.95 | |
| KOG3515|consensus | 741 | 99.94 | ||
| KOG3515|consensus | 741 | 99.88 | ||
| PHA02826 | 227 | IL-1 receptor-like protein; Provisional | 99.8 | |
| cd05762 | 98 | Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of | 99.79 | |
| PHA02826 | 227 | IL-1 receptor-like protein; Provisional | 99.77 | |
| cd05851 | 88 | Ig3_Contactin-1 Third Ig domain of contactin-1. Ig | 99.7 | |
| cd05747 | 92 | Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like | 99.69 | |
| cd05762 | 98 | Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of | 99.69 | |
| PF07679 | 90 | I-set: Immunoglobulin I-set domain; InterPro: IPR0 | 99.68 | |
| cd05894 | 86 | Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card | 99.68 | |
| cd05892 | 75 | Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like | 99.67 | |
| cd05737 | 92 | Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)- | 99.67 | |
| cd04975 | 101 | Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma | 99.66 | |
| cd05852 | 73 | Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig | 99.64 | |
| cd05893 | 75 | Ig_Palladin_C C-terminal immunoglobulin (Ig)-like | 99.64 | |
| cd04972 | 90 | Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o | 99.64 | |
| cd05745 | 74 | Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom | 99.63 | |
| cd05730 | 95 | Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom | 99.63 | |
| cd05870 | 98 | Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o | 99.62 | |
| cd05869 | 97 | Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o | 99.62 | |
| cd05748 | 74 | Ig_Titin_like Immunoglobulin (Ig)-like domain of t | 99.62 | |
| cd05735 | 88 | Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down | 99.62 | |
| cd05859 | 101 | Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do | 99.61 | |
| cd05728 | 85 | Ig4_Contactin-2-like Fourth Ig domain of the neura | 99.61 | |
| cd05744 | 75 | Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain | 99.6 | |
| cd05865 | 96 | Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o | 99.6 | |
| cd05866 | 92 | Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o | 99.6 | |
| cd05737 | 92 | Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)- | 99.6 | |
| cd04968 | 88 | Ig3_Contactin_like Third Ig domain of contactin. I | 99.6 | |
| cd05863 | 67 | Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain | 99.6 | |
| cd05723 | 71 | Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai | 99.6 | |
| cd05732 | 96 | Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom | 99.6 | |
| cd05743 | 78 | Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai | 99.59 | |
| cd05867 | 76 | Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do | 99.59 | |
| cd05747 | 92 | Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like | 99.58 | |
| cd05894 | 86 | Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card | 99.58 | |
| cd05851 | 88 | Ig3_Contactin-1 Third Ig domain of contactin-1. Ig | 99.57 | |
| cd04975 | 101 | Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma | 99.57 | |
| cd05868 | 76 | Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o | 99.57 | |
| PF07679 | 90 | I-set: Immunoglobulin I-set domain; InterPro: IPR0 | 99.56 | |
| cd07693 | 100 | Ig1_Robo First immunoglobulin (Ig)-like domain in | 99.56 | |
| cd05891 | 92 | Ig_M-protein_C C-terminal immunoglobulin (Ig)-like | 99.56 | |
| cd05857 | 85 | Ig2_FGFR Second immunoglobulin (Ig)-like domain of | 99.56 | |
| cd04969 | 73 | Ig5_Contactin_like Fifth Ig domain of contactin. I | 99.56 | |
| cd05892 | 75 | Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like | 99.56 | |
| cd05848 | 94 | Ig1_Contactin-5 First Ig domain of contactin-5. Ig | 99.56 | |
| cd05853 | 85 | Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig | 99.56 | |
| cd05854 | 85 | Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig | 99.55 | |
| cd05855 | 79 | Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T | 99.55 | |
| cd05740 | 91 | Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai | 99.55 | |
| cd05864 | 70 | Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain | 99.55 | |
| cd05852 | 73 | Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig | 99.54 | |
| cd04971 | 81 | Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of | 99.54 | |
| cd04978 | 76 | Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like | 99.54 | |
| cd05850 | 94 | Ig1_Contactin-2 First Ig domain of contactin-2. Ig | 99.54 | |
| cd05745 | 74 | Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom | 99.53 | |
| cd04976 | 71 | Ig2_VEGFR Second immunoglobulin (Ig)-like domain o | 99.53 | |
| cd05893 | 75 | Ig_Palladin_C C-terminal immunoglobulin (Ig)-like | 99.53 | |
| cd05746 | 69 | Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do | 99.52 | |
| cd05760 | 77 | Ig2_PTK7 Second immunoglobulin (Ig)-like domain of | 99.52 | |
| cd05773 | 109 | Ig8_hNephrin_like Eighth immunoglobulin-like domai | 99.52 | |
| cd05739 | 69 | Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li | 99.51 | |
| cd05758 | 98 | Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do | 99.51 | |
| cd04973 | 79 | Ig1_FGFR First immunoglobulin (Ig)-like domain of | 99.51 | |
| cd05748 | 74 | Ig_Titin_like Immunoglobulin (Ig)-like domain of t | 99.51 | |
| cd04972 | 90 | Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o | 99.51 | |
| cd05849 | 93 | Ig1_Contactin-1 First Ig domain of contactin-1. Ig | 99.5 | |
| cd05876 | 71 | Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o | 99.5 | |
| cd05869 | 97 | Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o | 99.5 | |
| cd05723 | 71 | Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai | 99.49 | |
| cd05763 | 75 | Ig_1 Subgroup of the immunoglobulin (Ig) superfami | 99.49 | |
| cd05744 | 75 | Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain | 99.49 | |
| cd05865 | 96 | Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o | 99.49 | |
| cd05859 | 101 | Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do | 99.48 | |
| cd05735 | 88 | Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down | 99.48 | |
| cd04970 | 85 | Ig6_Contactin_like Sixth Ig domain of contactin. I | 99.48 | |
| cd05730 | 95 | Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom | 99.48 | |
| cd05743 | 78 | Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai | 99.48 | |
| cd05870 | 98 | Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o | 99.48 | |
| cd05728 | 85 | Ig4_Contactin-2-like Fourth Ig domain of the neura | 99.48 | |
| cd05736 | 76 | Ig2_Follistatin_like Second immunoglobulin (Ig)-li | 99.48 | |
| cd04977 | 92 | Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom | 99.47 | |
| cd05863 | 67 | Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain | 99.47 | |
| cd05764 | 74 | Ig_2 Subgroup of the immunoglobulin (Ig) superfami | 99.47 | |
| cd05725 | 69 | Ig3_Robo Third immunoglobulin (Ig)-like domain in | 99.47 | |
| cd05854 | 85 | Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig | 99.47 | |
| cd05866 | 92 | Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o | 99.47 | |
| cd05726 | 90 | Ig4_Robo Fhird immunoglobulin (Ig)-like domain in | 99.47 | |
| cd05858 | 90 | Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o | 99.47 | |
| cd05856 | 82 | Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do | 99.46 | |
| cd05891 | 92 | Ig_M-protein_C C-terminal immunoglobulin (Ig)-like | 99.46 | |
| cd04974 | 90 | Ig3_FGFR Third immunoglobulin (Ig)-like domain of | 99.46 | |
| cd04968 | 88 | Ig3_Contactin_like Third Ig domain of contactin. I | 99.46 | |
| cd05724 | 86 | Ig2_Robo Second immunoglobulin (Ig)-like domain in | 99.46 | |
| cd05853 | 85 | Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig | 99.46 | |
| cd05867 | 76 | Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do | 99.45 | |
| cd04969 | 73 | Ig5_Contactin_like Fifth Ig domain of contactin. I | 99.45 | |
| cd05732 | 96 | Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom | 99.45 | |
| cd05749 | 81 | Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom | 99.45 | |
| cd05868 | 76 | Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o | 99.45 | |
| cd05773 | 109 | Ig8_hNephrin_like Eighth immunoglobulin-like domai | 99.44 | |
| cd05722 | 95 | Ig1_Neogenin First immunoglobulin (Ig)-like domain | 99.44 | |
| cd05738 | 74 | Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l | 99.44 | |
| cd05731 | 71 | Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom | 99.43 | |
| cd05750 | 75 | Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain | 99.43 | |
| cd05857 | 85 | Ig2_FGFR Second immunoglobulin (Ig)-like domain of | 99.43 | |
| cd04973 | 79 | Ig1_FGFR First immunoglobulin (Ig)-like domain of | 99.42 | |
| cd07693 | 100 | Ig1_Robo First immunoglobulin (Ig)-like domain in | 99.41 | |
| cd04967 | 91 | Ig1_Contactin First Ig domain of contactin. Ig1_Co | 99.41 | |
| cd04978 | 76 | Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like | 99.41 | |
| cd07702 | 72 | Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain | 99.41 | |
| cd05756 | 94 | Ig1_IL1R_like First immunoglobulin (Ig)-like domai | 99.4 | |
| cd05746 | 69 | Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do | 99.4 | |
| cd05898 | 98 | Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain | 99.39 | |
| cd05864 | 70 | Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain | 99.38 | |
| cd05765 | 81 | Ig_3 Subgroup of the immunoglobulin (Ig) superfami | 99.38 | |
| cd05848 | 94 | Ig1_Contactin-5 First Ig domain of contactin-5. Ig | 99.38 | |
| cd04970 | 85 | Ig6_Contactin_like Sixth Ig domain of contactin. I | 99.38 | |
| cd05855 | 79 | Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T | 99.37 | |
| cd05740 | 91 | Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai | 99.37 | |
| cd04971 | 81 | Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of | 99.37 | |
| cd05733 | 77 | Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom | 99.37 | |
| cd05739 | 69 | Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li | 99.37 | |
| cd05876 | 71 | Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o | 99.36 | |
| cd04976 | 71 | Ig2_VEGFR Second immunoglobulin (Ig)-like domain o | 99.36 | |
| cd05760 | 77 | Ig2_PTK7 Second immunoglobulin (Ig)-like domain of | 99.36 | |
| cd05771 | 139 | IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | 99.35 | |
| cd05752 | 78 | Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do | 99.35 | |
| cd05850 | 94 | Ig1_Contactin-2 First Ig domain of contactin-2. Ig | 99.34 | |
| cd05758 | 98 | Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do | 99.34 | |
| cd05764 | 74 | Ig_2 Subgroup of the immunoglobulin (Ig) superfami | 99.34 | |
| cd05742 | 84 | Ig1_VEGFR_like First immunoglobulin (Ig)-like doma | 99.33 | |
| cd05738 | 74 | Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l | 99.33 | |
| cd05874 | 77 | Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of | 99.33 | |
| cd05726 | 90 | Ig4_Robo Fhird immunoglobulin (Ig)-like domain in | 99.32 | |
| cd05875 | 77 | Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li | 99.32 | |
| cd05849 | 93 | Ig1_Contactin-1 First Ig domain of contactin-1. Ig | 99.32 | |
| cd05763 | 75 | Ig_1 Subgroup of the immunoglobulin (Ig) superfami | 99.32 | |
| cd05895 | 76 | Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai | 99.32 | |
| cd05736 | 76 | Ig2_Follistatin_like Second immunoglobulin (Ig)-li | 99.32 | |
| cd05725 | 69 | Ig3_Robo Third immunoglobulin (Ig)-like domain in | 99.32 | |
| cd05858 | 90 | Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o | 99.31 | |
| cd05724 | 86 | Ig2_Robo Second immunoglobulin (Ig)-like domain in | 99.3 | |
| cd04974 | 90 | Ig3_FGFR Third immunoglobulin (Ig)-like domain of | 99.3 | |
| cd04977 | 92 | Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom | 99.3 | |
| cd05729 | 85 | Ig2_FGFR_like Second immunoglobulin (Ig)-like doma | 99.3 | |
| cd05750 | 75 | Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain | 99.29 | |
| cd05856 | 82 | Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do | 99.29 | |
| cd05722 | 95 | Ig1_Neogenin First immunoglobulin (Ig)-like domain | 99.28 | |
| cd05734 | 79 | Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain | 99.28 | |
| cd05749 | 81 | Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom | 99.27 | |
| cd07702 | 72 | Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain | 99.27 | |
| cd05861 | 84 | Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like | 99.27 | |
| cd05731 | 71 | Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom | 99.27 | |
| cd07701 | 95 | Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)- | 99.26 | |
| cd05873 | 87 | Ig_Sema4D_like Immunoglobulin (Ig)-like domain of | 99.26 | |
| cd05754 | 85 | Ig3_Perlecan_like Third immunoglobulin (Ig)-like d | 99.25 | |
| cd05895 | 76 | Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai | 99.25 | |
| cd05756 | 94 | Ig1_IL1R_like First immunoglobulin (Ig)-like domai | 99.23 | |
| cd05765 | 81 | Ig_3 Subgroup of the immunoglobulin (Ig) superfami | 99.23 | |
| cd05742 | 84 | Ig1_VEGFR_like First immunoglobulin (Ig)-like doma | 99.22 | |
| cd05757 | 92 | Ig2_IL1R_like Second immunoglobulin (Ig)-like doma | 99.21 | |
| TIGR00864 | 2740 | PCC polycystin cation channel protein. Note: this | 99.2 | |
| cd04979 | 89 | Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of | 99.2 | |
| cd05882 | 95 | Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)- | 99.19 | |
| cd05733 | 77 | Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom | 99.19 | |
| cd05874 | 77 | Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of | 99.17 | |
| cd05771 | 139 | IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | 99.17 | |
| cd05861 | 84 | Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like | 99.17 | |
| cd05898 | 98 | Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain | 99.16 | |
| cd05873 | 87 | Ig_Sema4D_like Immunoglobulin (Ig)-like domain of | 99.16 | |
| TIGR00864 | 2740 | PCC polycystin cation channel protein. Note: this | 99.16 | |
| cd07701 | 95 | Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)- | 99.14 | |
| cd05875 | 77 | Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li | 99.14 | |
| cd05727 | 96 | Ig2_Contactin-2-like Second Ig domain of the neura | 99.14 | |
| cd04967 | 91 | Ig1_Contactin First Ig domain of contactin. Ig1_Co | 99.13 | |
| cd05752 | 78 | Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do | 99.13 | |
| cd05753 | 83 | Ig2_FcgammaR_like Second immunoglobulin (Ig)-like | 99.13 | |
| cd05754 | 85 | Ig3_Perlecan_like Third immunoglobulin (Ig)-like d | 99.12 | |
| cd05729 | 85 | Ig2_FGFR_like Second immunoglobulin (Ig)-like doma | 99.12 | |
| cd07690 | 94 | Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I | 99.1 | |
| cd05757 | 92 | Ig2_IL1R_like Second immunoglobulin (Ig)-like doma | 99.09 | |
| cd05727 | 96 | Ig2_Contactin-2-like Second Ig domain of the neura | 99.09 | |
| PF13895 | 80 | Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V | 99.09 | |
| cd05734 | 79 | Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain | 99.09 | |
| cd05862 | 86 | Ig1_VEGFR First immunoglobulin (Ig)-like domain of | 99.08 | |
| cd05882 | 95 | Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)- | 99.07 | |
| smart00410 | 86 | IG_like Immunoglobulin like. IG domains that canno | 99.05 | |
| smart00409 | 86 | IG Immunoglobulin. | 99.05 | |
| smart00408 | 63 | IGc2 Immunoglobulin C-2 Type. | 99.05 | |
| cd05860 | 101 | Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of | 99.04 | |
| cd05871 | 91 | Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do | 99.04 | |
| cd05753 | 83 | Ig2_FcgammaR_like Second immunoglobulin (Ig)-like | 99.04 | |
| cd05717 | 95 | Ig1_Necl-1-3_like First (N-terminal) immunoglobuli | 99.02 | |
| cd04979 | 89 | Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of | 99.02 | |
| cd05885 | 80 | Ig2_Necl-4 Second immunoglobulin (Ig)-like domain | 99.01 | |
| cd07690 | 94 | Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I | 99.01 | |
| cd05845 | 95 | Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do | 99.0 | |
| cd05845 | 95 | Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do | 99.0 | |
| cd05717 | 95 | Ig1_Necl-1-3_like First (N-terminal) immunoglobuli | 99.0 | |
| cd05862 | 86 | Ig1_VEGFR First immunoglobulin (Ig)-like domain of | 98.98 | |
| smart00410 | 86 | IG_like Immunoglobulin like. IG domains that canno | 98.93 | |
| smart00409 | 86 | IG Immunoglobulin. | 98.93 | |
| cd05881 | 95 | Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)- | 98.93 | |
| PF00047 | 64 | ig: Immunoglobulin domain The Prosite family only | 98.92 | |
| cd05871 | 91 | Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do | 98.92 | |
| cd05897 | 95 | Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom | 98.91 | |
| cd05896 | 104 | Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like | 98.9 | |
| cd05896 | 104 | Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like | 98.88 | |
| cd05897 | 95 | Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom | 98.85 | |
| cd05885 | 80 | Ig2_Necl-4 Second immunoglobulin (Ig)-like domain | 98.85 | |
| cd05872 | 85 | Ig_Sema4B_like Immunoglobulin (Ig)-like domain of | 98.85 | |
| smart00408 | 63 | IGc2 Immunoglobulin C-2 Type. | 98.84 | |
| cd05860 | 101 | Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of | 98.82 | |
| PF13895 | 80 | Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V | 98.82 | |
| cd05881 | 95 | Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)- | 98.82 | |
| cd05759 | 82 | Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d | 98.82 | |
| cd05872 | 85 | Ig_Sema4B_like Immunoglobulin (Ig)-like domain of | 98.81 | |
| PF00047 | 64 | ig: Immunoglobulin domain The Prosite family only | 98.81 | |
| PHA03376 | 221 | BARF1; Provisional | 98.8 | |
| cd05751 | 91 | Ig1_LILRB1_like First immunoglobulin (Ig)-like dom | 98.76 | |
| cd05759 | 82 | Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d | 98.72 | |
| PHA03376 | 221 | BARF1; Provisional | 98.71 | |
| PF13927 | 75 | Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V | 98.67 | |
| cd05714 | 106 | Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho | 98.64 | |
| cd05877 | 106 | Ig_LP_like Immunoglobulin (Ig)-like domain of huma | 98.63 | |
| cd04983 | 109 | IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V | 98.62 | |
| cd05751 | 91 | Ig1_LILRB1_like First immunoglobulin (Ig)-like dom | 98.62 | |
| cd04983 | 109 | IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V | 98.6 | |
| cd05883 | 82 | Ig2_Necl-2 Second immunoglobulin (Ig)-like domain | 98.59 | |
| cd05713 | 100 | Ig_MOG_like Immunoglobulin (Ig)-like domain of mye | 98.59 | |
| cd05900 | 112 | Ig_Aggrecan Immunoglobulin (Ig)-like domain of the | 98.57 | |
| cd00099 | 105 | IgV Immunoglobulin variable domain (IgV). IgV: Imm | 98.57 | |
| cd05774 | 105 | Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain | 98.56 | |
| cd05879 | 116 | Ig_P0 Immunoglobulin (Ig)-like domain of Protein z | 98.56 | |
| cd05774 | 105 | Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain | 98.51 | |
| cd05899 | 110 | IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma | 98.5 | |
| cd05877 | 106 | Ig_LP_like Immunoglobulin (Ig)-like domain of huma | 98.5 | |
| cd05718 | 98 | Ig1_PVR_like First immunoglobulin (Ig) domain of p | 98.49 | |
| cd05713 | 100 | Ig_MOG_like Immunoglobulin (Ig)-like domain of mye | 98.49 | |
| cd05878 | 110 | Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o | 98.48 | |
| cd00099 | 105 | IgV Immunoglobulin variable domain (IgV). IgV: Imm | 98.48 | |
| cd05899 | 110 | IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma | 98.48 | |
| cd04980 | 106 | IgV_L_kappa Immunoglobulin (Ig) light chain, kappa | 98.47 | |
| cd04980 | 106 | IgV_L_kappa Immunoglobulin (Ig) light chain, kappa | 98.45 | |
| cd05879 | 116 | Ig_P0 Immunoglobulin (Ig)-like domain of Protein z | 98.45 | |
| cd05883 | 82 | Ig2_Necl-2 Second immunoglobulin (Ig)-like domain | 98.44 | |
| cd04982 | 116 | IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom | 98.44 | |
| cd05755 | 100 | Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do | 98.44 | |
| cd05714 | 106 | Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho | 98.41 | |
| cd05900 | 112 | Ig_Aggrecan Immunoglobulin (Ig)-like domain of the | 98.41 | |
| cd05878 | 110 | Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o | 98.41 | |
| cd04984 | 98 | IgV_L_lambda Immunoglobulin (Ig) lambda light chai | 98.4 | |
| cd04984 | 98 | IgV_L_lambda Immunoglobulin (Ig) lambda light chai | 98.4 | |
| cd05711 | 94 | Ig_FcalphaRI Immunoglobulin (IG)-like domain of of | 98.4 | |
| cd05761 | 82 | Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like | 98.39 | |
| cd05741 | 92 | Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d | 98.39 | |
| cd05775 | 97 | Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig) | 98.39 | |
| cd05888 | 100 | Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain | 98.38 | |
| cd07694 | 88 | Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. | 98.37 | |
| cd05880 | 115 | Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel | 98.37 | |
| cd05711 | 94 | Ig_FcalphaRI Immunoglobulin (IG)-like domain of of | 98.35 | |
| cd05718 | 98 | Ig1_PVR_like First immunoglobulin (Ig) domain of p | 98.35 | |
| cd04982 | 116 | IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom | 98.33 | |
| PHA02987 | 189 | Ig domain OX-2-like protein; Provisional | 98.33 | |
| cd07705 | 83 | Ig2_Necl-1 Second immunoglobulin (Ig)-like domain | 98.33 | |
| cd05902 | 110 | Ig_Neurocan Immunoglobulin (Ig)-like domain of the | 98.32 | |
| cd05761 | 82 | Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like | 98.32 | |
| cd05886 | 99 | Ig1_Nectin-1_like First immunoglobulin (Ig) domain | 98.32 | |
| cd05715 | 116 | Ig_P0-like Immunoglobulin (Ig)-like domain of Prot | 98.31 | |
| cd05755 | 100 | Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do | 98.31 | |
| cd05741 | 92 | Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d | 98.31 | |
| cd05880 | 115 | Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel | 98.3 | |
| cd05715 | 116 | Ig_P0-like Immunoglobulin (Ig)-like domain of Prot | 98.26 | |
| cd05901 | 117 | Ig_Versican Immunoglobulin (Ig)-like domain of the | 98.25 | |
| cd00098 | 95 | IgC Immunoglobulin Constant domain. IgC: Immunoglo | 98.23 | |
| PF13927 | 75 | Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V | 98.22 | |
| cd07705 | 83 | Ig2_Necl-1 Second immunoglobulin (Ig)-like domain | 98.2 | |
| cd00098 | 95 | IgC Immunoglobulin Constant domain. IgC: Immunoglo | 98.19 | |
| cd07706 | 116 | IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom | 98.18 | |
| cd05884 | 83 | Ig2_Necl-3 Second immunoglobulin (Ig)-like domain | 98.18 | |
| cd05775 | 97 | Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig) | 98.18 | |
| cd05884 | 83 | Ig2_Necl-3 Second immunoglobulin (Ig)-like domain | 98.16 | |
| cd05772 | 111 | IgC_SIRP Signal-regulatory protein (SIRP) immunogl | 98.16 | |
| PHA02987 | 189 | Ig domain OX-2-like protein; Provisional | 98.15 | |
| PF07686 | 114 | V-set: Immunoglobulin V-set domain; InterPro: IPR0 | 98.14 | |
| PF07686 | 114 | V-set: Immunoglobulin V-set domain; InterPro: IPR0 | 98.13 | |
| cd05888 | 100 | Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain | 98.13 | |
| cd05902 | 110 | Ig_Neurocan Immunoglobulin (Ig)-like domain of the | 98.1 | |
| cd05772 | 111 | IgC_SIRP Signal-regulatory protein (SIRP) immunogl | 98.1 | |
| cd05887 | 96 | Ig1_Nectin-3_like First immunoglobulin (Ig) domain | 98.1 | |
| cd05712 | 119 | Ig_Siglec_N Immunoglobulin (Ig) domain at the N te | 98.09 | |
| cd07706 | 116 | IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom | 98.09 | |
| cd05846 | 97 | Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain | 98.08 | |
| cd05846 | 97 | Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain | 98.07 | |
| cd07699 | 100 | IgC_L Immunoglobulin Constant domain. IgC_L: Immun | 98.07 | |
| cd05716 | 98 | Ig_pIgR Immunoglobulin (Ig)-like domain in the pol | 98.06 | |
| cd05716 | 98 | Ig_pIgR Immunoglobulin (Ig)-like domain in the pol | 98.06 | |
| cd05886 | 99 | Ig1_Nectin-1_like First immunoglobulin (Ig) domain | 98.04 | |
| cd05766 | 94 | IgC_MHC_II_beta Class II major histocompatibility | 98.02 | |
| cd07698 | 93 | IgC_MHC_I_alpha3 Class I major histocompatibility | 98.02 | |
| cd05901 | 117 | Ig_Versican Immunoglobulin (Ig)-like domain of the | 98.01 | |
| PHA03269 | 566 | envelope glycoprotein C; Provisional | 98.0 | |
| cd05720 | 104 | Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD | 98.0 | |
| cd07700 | 107 | IgV_CD8_beta Immunoglobulin (Ig) like domain of CD | 97.98 | |
| cd05887 | 96 | Ig1_Nectin-3_like First immunoglobulin (Ig) domain | 97.97 | |
| cd07700 | 107 | IgV_CD8_beta Immunoglobulin (Ig) like domain of CD | 97.96 | |
| PF08205 | 89 | C2-set_2: CD80-like C2-set immunoglobulin domain ; | 97.94 | |
| cd05767 | 94 | IgC_MHC_II_alpha Class II major histocompatibility | 97.92 | |
| cd07698 | 93 | IgC_MHC_I_alpha3 Class I major histocompatibility | 97.9 | |
| cd07699 | 100 | IgC_L Immunoglobulin Constant domain. IgC_L: Immun | 97.9 | |
| cd05720 | 104 | Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD | 97.9 | |
| cd05769 | 115 | IgC_TCR_beta T cell receptor (TCR) beta chain cons | 97.89 | |
| cd07694 | 88 | Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. | 97.89 | |
| cd05770 | 93 | IgC_beta2m Class I major histocompatibility comple | 97.89 | |
| cd04981 | 117 | IgV_H Immunoglobulin (Ig) heavy chain (H), variabl | 97.87 | |
| cd05768 | 102 | IgC_CH4 CH4 domain (fourth constant Ig domain of t | 97.86 | |
| cd00096 | 74 | Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) | 97.85 | |
| PHA03273 | 486 | envelope glycoprotein C; Provisional | 97.85 | |
| PHA03270 | 466 | envelope glycoprotein C; Provisional | 97.84 | |
| PHA03270 | 466 | envelope glycoprotein C; Provisional | 97.79 | |
| smart00407 | 75 | IGc1 Immunoglobulin C-Type. | 97.79 | |
| cd05889 | 96 | Ig1_DNAM-1_like First immunoglobulin (Ig) domain o | 97.77 | |
| cd05847 | 94 | IgC_CH2_IgE CH2 domain (second constant Ig domain | 97.77 | |
| PHA03273 | 486 | envelope glycoprotein C; Provisional | 97.76 | |
| cd05768 | 102 | IgC_CH4 CH4 domain (fourth constant Ig domain of t | 97.75 | |
| cd07697 | 96 | IgC_TCR_gamma T cell receptor (TCR) gamma chain co | 97.74 | |
| cd05712 | 119 | Ig_Siglec_N Immunoglobulin (Ig) domain at the N te | 97.74 | |
| cd05766 | 94 | IgC_MHC_II_beta Class II major histocompatibility | 97.73 | |
| cd05719 | 95 | Ig2_PVR_like Second immunoglobulin (Ig) domain of | 97.72 | |
| cd05769 | 115 | IgC_TCR_beta T cell receptor (TCR) beta chain cons | 97.69 | |
| PF08205 | 89 | C2-set_2: CD80-like C2-set immunoglobulin domain ; | 97.69 | |
| cd05767 | 94 | IgC_MHC_II_alpha Class II major histocompatibility | 97.67 | |
| smart00407 | 75 | IGc1 Immunoglobulin C-Type. | 97.67 | |
| cd05770 | 93 | IgC_beta2m Class I major histocompatibility comple | 97.67 | |
| cd05847 | 94 | IgC_CH2_IgE CH2 domain (second constant Ig domain | 97.65 | |
| smart00406 | 81 | IGv Immunoglobulin V-Type. | 97.64 | |
| cd04981 | 117 | IgV_H Immunoglobulin (Ig) heavy chain (H), variabl | 97.63 | |
| PHA03271 | 490 | envelope glycoprotein C; Provisional | 97.61 | |
| cd07696 | 96 | IgC_CH3 CH3 domain (third constant Ig domain of th | 97.61 | |
| KOG0613|consensus | 1205 | 97.61 | ||
| KOG0613|consensus | 1205 | 97.59 | ||
| PHA03271 | 490 | envelope glycoprotein C; Provisional | 97.59 | |
| cd05889 | 96 | Ig1_DNAM-1_like First immunoglobulin (Ig) domain o | 97.57 | |
| cd07696 | 96 | IgC_CH3 CH3 domain (third constant Ig domain of th | 97.56 | |
| PF07654 | 83 | C1-set: Immunoglobulin C1-set domain; InterPro: IP | 97.54 | |
| cd00096 | 74 | Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) | 97.53 | |
| PHA03269 | 566 | envelope glycoprotein C; Provisional | 97.53 | |
| smart00406 | 81 | IGv Immunoglobulin V-Type. | 97.53 | |
| KOG1480|consensus | 909 | 97.52 | ||
| cd04986 | 99 | IgC_CH2 CH2 domain (second constant Ig domain of t | 97.51 | |
| cd07704 | 97 | Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom | 97.41 | |
| cd07691 | 69 | Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain | 97.41 | |
| cd07697 | 96 | IgC_TCR_gamma T cell receptor (TCR) gamma chain co | 97.37 | |
| cd04985 | 95 | IgC_CH1 CH1 domain (first constant Ig domain of th | 97.29 | |
| cd07703 | 95 | Ig2_Nectin-2_like Second immunoglobulin (Ig) domai | 97.28 | |
| cd05719 | 95 | Ig2_PVR_like Second immunoglobulin (Ig) domain of | 97.27 | |
| PF07654 | 83 | C1-set: Immunoglobulin C1-set domain; InterPro: IP | 97.27 | |
| cd07704 | 97 | Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom | 97.19 | |
| cd07692 | 65 | Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of | 97.16 | |
| cd05721 | 115 | IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic | 97.13 | |
| cd05721 | 115 | IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic | 97.13 | |
| cd07692 | 65 | Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of | 97.1 | |
| cd04986 | 99 | IgC_CH2 CH2 domain (second constant Ig domain of t | 97.08 | |
| PHA02982 | 251 | hypothetical protein; Provisional | 97.05 | |
| cd04985 | 95 | IgC_CH1 CH1 domain (first constant Ig domain of th | 97.04 | |
| cd07703 | 95 | Ig2_Nectin-2_like Second immunoglobulin (Ig) domai | 96.97 | |
| cd07689 | 99 | Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain | 96.89 | |
| KOG4597|consensus | 560 | 96.85 | ||
| KOG1480|consensus | 909 | 96.84 | ||
| cd07691 | 69 | Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain | 96.73 | |
| cd07689 | 99 | Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain | 96.71 | |
| PHA02633 | 63 | hypothetical protein; Provisional | 96.69 | |
| PHA02633 | 63 | hypothetical protein; Provisional | 96.69 | |
| PF08204 | 130 | V-set_CD47: CD47 immunoglobulin-like domain; Inter | 96.16 | |
| PF08204 | 130 | V-set_CD47: CD47 immunoglobulin-like domain; Inter | 96.12 | |
| PHA02914 | 500 | Immunoglobulin-like domain protein; Provisional | 95.56 | |
| PHA02982 | 251 | hypothetical protein; Provisional | 95.49 | |
| KOG4597|consensus | 560 | 94.76 | ||
| PHA03042 | 286 | CD47-like protein; Provisional | 94.61 | |
| PF07354 | 271 | Sp38: Zona-pellucida-binding protein (Sp38); Inter | 94.43 | |
| PHA03283 | 542 | envelope glycoprotein E; Provisional | 94.35 | |
| PF07354 | 271 | Sp38: Zona-pellucida-binding protein (Sp38); Inter | 94.11 | |
| PHA02914 | 500 | Immunoglobulin-like domain protein; Provisional | 93.77 | |
| PHA03283 | 542 | envelope glycoprotein E; Provisional | 93.32 | |
| PF11465 | 108 | Receptor_2B4: Natural killer cell receptor 2B4; In | 93.0 | |
| PF11465 | 108 | Receptor_2B4: Natural killer cell receptor 2B4; In | 92.89 | |
| PHA03042 | 286 | CD47-like protein; Provisional | 92.28 | |
| PHA02865 | 338 | MHC-like TNF binding protein; Provisional | 91.69 | |
| PHA02865 | 338 | MHC-like TNF binding protein; Provisional | 91.6 | |
| PF06328 | 89 | Lep_receptor_Ig: Ig-like C2-type domain; InterPro: | 91.56 | |
| PF05790 | 80 | C2-set: Immunoglobulin C2-set domain; InterPro: IP | 91.25 | |
| PF06328 | 89 | Lep_receptor_Ig: Ig-like C2-type domain; InterPro: | 91.1 | |
| PF02124 | 211 | Marek_A: Marek's disease glycoprotein A; InterPro: | 90.43 | |
| PHA03282 | 540 | envelope glycoprotein E; Provisional | 90.32 | |
| PHA03286 | 492 | envelope glycoprotein E; Provisional | 90.3 | |
| PHA03286 | 492 | envelope glycoprotein E; Provisional | 90.21 | |
| PF06832 | 89 | BiPBP_C: Penicillin-Binding Protein C-terminus Fam | 88.96 | |
| PHA03282 | 540 | envelope glycoprotein E; Provisional | 88.76 | |
| PF02124 | 211 | Marek_A: Marek's disease glycoprotein A; InterPro: | 88.61 | |
| PHA03052 | 69 | Hypothetical protein; Provisional | 88.44 | |
| PHA03281 | 642 | envelope glycoprotein E; Provisional | 88.26 | |
| PHA03052 | 69 | Hypothetical protein; Provisional | 87.71 | |
| PHA03281 | 642 | envelope glycoprotein E; Provisional | 86.99 | |
| PF02480 | 439 | Herpes_gE: Alphaherpesvirus glycoprotein E; InterP | 86.96 | |
| PHA03189 | 348 | UL14 tegument protein; Provisional | 86.38 | |
| PF05790 | 80 | C2-set: Immunoglobulin C2-set domain; InterPro: IP | 85.79 | |
| PHA03189 | 348 | UL14 tegument protein; Provisional | 84.37 | |
| PF02480 | 439 | Herpes_gE: Alphaherpesvirus glycoprotein E; InterP | 83.88 | |
| KOG1026|consensus | 774 | 82.46 | ||
| PF03921 | 91 | ICAM_N: Intercellular adhesion molecule (ICAM), N- | 81.51 |
| >KOG3513|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-60 Score=516.46 Aligned_cols=539 Identities=24% Similarity=0.340 Sum_probs=416.0
Q ss_pred CeEEecCCCCceecCCCc--EEEEEEEecCCCCCceEEEEECCEecCCCC--ceEEEecCcEEEEEEcccc-cCCCeEEE
Q psy2166 66 PVFIVPLKPEFKLGEAQP--LHLEAQVEPKNDPNLKIEWIFNGKPLELGS--RFKTTADFGFVTLDLTEVY-DRDQGIYT 140 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~--v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~--~~~~~~~~~~~~L~I~~~~-~~D~G~Y~ 140 (805)
|.|+..+........-+. ++|.|.+. |+|.|++.|+|||..+.... ++.+. ++ +|.|.+.. ..|.|.|+
T Consensus 40 P~f~~q~~~~~~~~~~~~~~v~l~C~A~--G~P~Psy~W~kng~~~d~~~~~~~~~~--~G--~lvI~~p~~~~d~G~Yq 113 (1051)
T KOG3513|consen 40 PVFVEQPNDVIVPFPSDDSSVTLNCEAN--GNPEPSYRWTKNGTEFDPTEYPRVSVL--GG--TLVITNPDAALDQGIYQ 113 (1051)
T ss_pred ceeeecCCceEEecccCCccEEEEEEec--CCCCceeEEEECCeecccccccceeee--cC--ceEecCCcchhhcceeE
Confidence 888877765544444443 99999999 79999999999999887654 44444 33 67887777 88999999
Q ss_pred EEEEeCCeeEEEE-EEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCc
Q psy2166 141 CRAWNLAGETFTS-TTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGE 219 (805)
Q Consensus 141 C~a~n~~g~~~~~-~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~ 219 (805)
|.|+|..|...+. +.|... .-+.|...-++...+.+|+
T Consensus 114 C~AsN~~Gta~S~~~~l~~~-----------------------------------------~i~~F~~e~~~~v~v~eG~ 152 (1051)
T KOG3513|consen 114 CFASNKLGTAVSREARLQFG-----------------------------------------FIPKFKKEERSPVEVEEGD 152 (1051)
T ss_pred EEeecccceeeccceeeccc-----------------------------------------ccccCccccCCcEEEEeCC
Confidence 9999999887553 333321 1233443334455689999
Q ss_pred eEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeE---EEEEEEEEe
Q psy2166 220 IAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA---EISVNLECV 296 (805)
Q Consensus 220 ~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~---~~~~~l~v~ 296 (805)
.+.|.|.-- .+.|.+.+.|..+..+--.....+.+.......|.|.++..+|.+.|.|.|.+..... ...+.|.+.
T Consensus 153 ~~~L~C~pP-~~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~ 231 (1051)
T KOG3513|consen 153 GVVLPCNPP-AHFPPLRYYWMLNEFPHFVQIDNRRVFSQENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVR 231 (1051)
T ss_pred ceEEeCCCC-CCCCCccEEehhccCCcccccCcceeEecccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEc
Confidence 999999753 5778899999987654311111111222333479999999999999999999843222 233344431
Q ss_pred c--cCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCcEEEEEEcccCcCCc
Q psy2166 297 D--KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDS 374 (805)
Q Consensus 297 ~--~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~ 374 (805)
. .....+|.+............|+.+.|.|-+. |.|.|.|.|.|.+.... ..+..... ...+|.|.++..+|+
T Consensus 232 ~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~--G~P~P~i~W~k~~g~~~-~~r~~~~~--~~~vL~I~nv~~~D~ 306 (1051)
T KOG3513|consen 232 SNNVMREYAPKILVPFPETETALKGQSVKLECFAL--GNPTPQIKWRKVDGKPP-PRRATYSN--YGKVLKIPNVQYEDA 306 (1051)
T ss_pred ccccccccCCccccCCCCcccccCCCeEEEEEEec--CCCCCcEEEEeCCCCCC-Ccceeeec--cccEEEecccCcCCC
Confidence 1 11235666666655455578999999999997 99999999999876321 22333222 233799999999999
Q ss_pred eEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCce
Q psy2166 375 GEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQS 454 (805)
Q Consensus 375 G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (805)
|.|.|.|.|..|.......+.|+
T Consensus 307 G~Y~C~AeN~~G~~~~~~~v~v~--------------------------------------------------------- 329 (1051)
T KOG3513|consen 307 GEYECIAENSRGSATHSGHVTVY--------------------------------------------------------- 329 (1051)
T ss_pred eEEEEEEecccccceeeEEEEEe---------------------------------------------------------
Confidence 99999999999988888888874
Q ss_pred EEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEE
Q psy2166 455 AHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFY 534 (805)
Q Consensus 455 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~ 534 (805)
.+|.+...+.+.. +-.|++++|.|.+. |.|.|.|+|+|
T Consensus 330 ---------------------------------------a~P~w~~~~~d~~-~~~gs~v~~eC~a~--g~P~p~v~Wlk 367 (1051)
T KOG3513|consen 330 ---------------------------------------APPYWLQKPQDTE-ADTGSNVTLECKAS--GKPNPTVKWLK 367 (1051)
T ss_pred ---------------------------------------cCchhhcccceeE-ecCCCCeEEEEEec--CCCCCceEEee
Confidence 5677777666665 88999999999999 88999999999
Q ss_pred CCEEccCCCc---eEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeeeee-e----------------
Q psy2166 535 NGKKLPHGHR---YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTN-L---------------- 594 (805)
Q Consensus 535 ~g~~l~~~~~---~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~-~---------------- 594 (805)
||.+|....+ +.+.. + +|.|.+++.+|+|+|+|.|+|.+|....++.|.|.+.+. +
T Consensus 368 Ng~pl~~~~r~~~~~i~~--g--~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~ 443 (1051)
T KOG3513|consen 368 NGEPLEPAERDPRYKIDD--G--TLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGT 443 (1051)
T ss_pred CCeecCccCCCcceEEeC--C--EEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCe
Confidence 9999986555 55433 2 499999999999999999999999999999999987632 1
Q ss_pred -ee-----cCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeeccccc
Q psy2166 595 -IL-----ESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLI 668 (805)
Q Consensus 595 -~~-----~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~ 668 (805)
++ ..|.|.++|++.++.+..++|+.+..+|+ |.|.+++.+|+|.|+|.|+|..|.......|.|.+
T Consensus 444 v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGt---L~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd----- 515 (1051)
T KOG3513|consen 444 VTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGT---LEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKD----- 515 (1051)
T ss_pred EEEeeccCCCCcceEEEEcCCcccccCceEEECCCCc---EEecccCcccCcEEEEEEEcccCccceEEEEEEec-----
Confidence 22 24788999999999888889999988876 99999999999999999999999999999999984
Q ss_pred cccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccC---CCCeEEEe
Q psy2166 669 LESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEA---SHRIRTVH 745 (805)
Q Consensus 669 ~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~---~~~~~~~~ 745 (805)
+++|...|.+. .+..|+.+.|.|.+..+......|.|.+||+.+.- ...++...
T Consensus 516 ----------------------~tri~~~P~~~-~v~~g~~v~l~Ce~shD~~ld~~f~W~~nG~~id~~~~~~~~~~~~ 572 (1051)
T KOG3513|consen 516 ----------------------ATRITLAPSNT-DVKVGESVTLTCEASHDPSLDITFTWKKNGRPIDFNPDGDHFEIND 572 (1051)
T ss_pred ----------------------CceEEeccchh-hhccCceEEEEeecccCCCcceEEEEEECCEEhhccCCCCceEEeC
Confidence 78888888888 99999999999999855555678999999997653 33444332
Q ss_pred eCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEEeCCCc
Q psy2166 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQ 791 (805)
Q Consensus 746 ~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~ 791 (805)
......|+|.++...|+|.|+|+|.-.+-+.+..+.|.|+..|-++
T Consensus 573 ~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpPgpP 618 (1051)
T KOG3513|consen 573 GSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPPGPP 618 (1051)
T ss_pred CcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCCCCC
Confidence 2222469999999999999999999988899999999998764443
|
|
| >KOG3513|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-53 Score=458.07 Aligned_cols=496 Identities=24% Similarity=0.335 Sum_probs=390.9
Q ss_pred EEEEEEecCCc-----eeccccCC---------CCchhhhhHHhhh-hhhcCccccCCCCCCCCc----------CCCeE
Q psy2166 14 SGTLKCLGQKD-----IYLETQHP---------MGAAGLEKVQEVE-HALAGKYQRQPSGPEETF----------AKPVF 68 (805)
Q Consensus 14 ~~~l~~~~~~~-----~~~~~~~~---------~~~~g~~~i~~~~-~~d~g~y~c~~~~~~~~~----------~~p~~ 68 (805)
.++|.|.+++. .|..++.. ....|.+.|.+.. ..|.|.|+|.+.+..... -.+.|
T Consensus 59 ~v~l~C~A~G~P~Psy~W~kng~~~d~~~~~~~~~~~G~lvI~~p~~~~d~G~YqC~AsN~~Gta~S~~~~l~~~~i~~F 138 (1051)
T KOG3513|consen 59 SVTLNCEANGNPEPSYRWTKNGTEFDPTEYPRVSVLGGTLVITNPDAALDQGIYQCFASNKLGTAVSREARLQFGFIPKF 138 (1051)
T ss_pred cEEEEEEecCCCCceeEEEECCeecccccccceeeecCceEecCCcchhhcceeEEEeecccceeeccceeecccccccC
Confidence 47888887773 34332211 1235778887777 899999999888664321 24455
Q ss_pred EecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEe-cCC--CCceEEEecCcEEEEEEcccccCCCeEEEEEEEe
Q psy2166 69 IVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKP-LEL--GSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWN 145 (805)
Q Consensus 69 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~-i~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 145 (805)
.....+.+.+.+|+.+.|.|.... +.|.+.+.|..++.+ +.. +.|+.+..+| .|.|.++..+|.+.|.|.|.+
T Consensus 139 ~~e~~~~v~v~eG~~~~L~C~pP~-~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G---~Lyfs~V~~~D~~~Y~C~a~~ 214 (1051)
T KOG3513|consen 139 KKEERSPVEVEEGDGVVLPCNPPA-HFPPLRYYWMLNEFPHFVQIDNRRVFSQENG---NLYFSNVETSDFGNYICSATF 214 (1051)
T ss_pred ccccCCcEEEEeCCceEEeCCCCC-CCCCccEEehhccCCcccccCcceeEecccc---eEEEeecchhhcCceEEEEEc
Confidence 545555789999999999999864 578899999987543 222 3367676666 799999999999999999988
Q ss_pred CCeeE---EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEE
Q psy2166 146 LAGET---FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAH 222 (805)
Q Consensus 146 ~~g~~---~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~ 222 (805)
..-.. ...+.|.+.... .....+|.|...++.......|+.+.
T Consensus 215 ~~~~~~v~~~~~~L~~~~~~----------------------------------~~~~~~P~i~~~~p~~~~a~~G~~v~ 260 (1051)
T KOG3513|consen 215 PSTQTIVQGPPFPLIVRSNN----------------------------------VMREYAPKILVPFPETETALKGQSVK 260 (1051)
T ss_pred hhhcccccCCceeEEEcccc----------------------------------cccccCCccccCCCCcccccCCCeEE
Confidence 43211 122333331110 11125677777766566688999999
Q ss_pred EEEEEeeCCCCCeEEEEEECCE-EccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEeccCCC
Q psy2166 223 FEASLIPVGDQTMTVEFLYNGK-PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKG 301 (805)
Q Consensus 223 l~C~~~~~~~p~~~i~W~k~g~-~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~ 301 (805)
|.|.+ .|+|.|+|.|+|.|. ++... .. ..+...+|.|.+++.+|+|.|.|.|.|..|.......+.|.
T Consensus 261 LECfA--~G~P~P~i~W~k~~g~~~~~r--~~--~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~----- 329 (1051)
T KOG3513|consen 261 LECFA--LGNPTPQIKWRKVDGKPPPRR--AT--YSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVY----- 329 (1051)
T ss_pred EEEEe--cCCCCCcEEEEeCCCCCCCcc--ee--eeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEe-----
Confidence 99988 899999999999776 33322 22 22233589999999999999999999999999999999988
Q ss_pred CCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCc---eEEEEeCcEEEEEEcccCcCCceEEE
Q psy2166 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNR---VKMVSDFGFVVMDIAYVQSHDSGEYV 378 (805)
Q Consensus 302 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~---~~~~~~~~~~~l~i~~v~~~d~G~Y~ 378 (805)
.+|.+...+.+.. +..|++++|.|.+. |.|.|.|.|++||.++....+ ..+..+ +|.|.++...|+|.|.
T Consensus 330 a~P~w~~~~~d~~-~~~gs~v~~eC~a~--g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g----~L~is~v~~~dsg~YQ 402 (1051)
T KOG3513|consen 330 APPYWLQKPQDTE-ADTGSNVTLECKAS--GKPNPTVKWLKNGEPLEPAERDPRYKIDDG----TLIISNVQESDSGVYQ 402 (1051)
T ss_pred cCchhhcccceeE-ecCCCCeEEEEEec--CCCCCceEEeeCCeecCccCCCcceEEeCC----EEEEEecccccCeEEE
Confidence 7889988888877 88999999999998 999999999999999986655 444332 6999999999999999
Q ss_pred EEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEE
Q psy2166 379 CRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE 458 (805)
Q Consensus 379 C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (805)
|.|+|..|...+++.|.|..
T Consensus 403 C~A~Nk~G~i~anA~L~V~a------------------------------------------------------------ 422 (1051)
T KOG3513|consen 403 CIAENKYGTIYANAELKVLA------------------------------------------------------------ 422 (1051)
T ss_pred eeeecccceEeeeeEEEEEc------------------------------------------------------------
Confidence 99999999999999999963
Q ss_pred EEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecC-CCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCE
Q psy2166 459 ARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQI-SDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGK 537 (805)
Q Consensus 459 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~ 537 (805)
.+|.|...+ .....+..|.++.|.|.+. +.|.|.++|.|+++
T Consensus 423 -----------------------------------~~P~f~~~p~~~~~~a~~g~~v~i~C~~~--asP~p~~~W~k~~~ 465 (1051)
T KOG3513|consen 423 -----------------------------------SAPVFPLNPVERKVMAVVGGTVTIDCKPF--ASPKPKVSWLKGGE 465 (1051)
T ss_pred -----------------------------------cCCCCCCCccceEEEEEeCCeEEEeeccC--CCCcceEEEEcCCc
Confidence 445555543 4444588999999999999 78999999999999
Q ss_pred EccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeeeeeeeecCC------------------
Q psy2166 538 KLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQ------------------ 599 (805)
Q Consensus 538 ~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~------------------ 599 (805)
.+..+.|+.+..++. |.|.+++.+|+|.|+|.|.|..|.....+.|.|...+.+++.+.
T Consensus 466 ~~~~~~r~~i~edGt---L~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~sh 542 (1051)
T KOG3513|consen 466 KLLQSGRIRILEDGT---LEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEASH 542 (1051)
T ss_pred ccccCceEEECCCCc---EEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCceEEEEeeccc
Confidence 888888999888876 99999999999999999999999999999999999888766321
Q ss_pred ----CCeEEEEECCEEcc---CCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeecc
Q psy2166 600 ----LPEVEWFYNGKKLP---HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKT 665 (805)
Q Consensus 600 ----~p~v~W~~~g~~l~---~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p 665 (805)
...+.|.+||..+. .++++.+....+...|+|.+++..|+|.|.|.|.-...+.++.+.|.|..+|
T Consensus 543 D~~ld~~f~W~~nG~~id~~~~~~~~~~~~~~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~gpP 615 (1051)
T KOG3513|consen 543 DPSLDITFTWKKNGRPIDFNPDGDHFEINDGSDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVRGPP 615 (1051)
T ss_pred CCCcceEEEEEECCEEhhccCCCCceEEeCCcCccceEEEeeccccCceEEEEEEEeecchhcccceEEecCC
Confidence 23899999999874 3445554443333679999999999999999999999999999999999876
|
|
| >KOG4221|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-43 Score=381.93 Aligned_cols=534 Identities=21% Similarity=0.290 Sum_probs=382.2
Q ss_pred cCCCCCCC-CcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCC--CceEEEecCcEEEEEEcc
Q psy2166 54 RQPSGPEE-TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG--SRFKTTADFGFVTLDLTE 130 (805)
Q Consensus 54 c~~~~~~~-~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~--~~~~~~~~~~~~~L~I~~ 130 (805)
|+...... ...+-.|++.+. + +.+|..+.|.|.....+.+.+.|+|.|||..+... .|.++-.++ +|.|.+
T Consensus 29 ~q~~~~~~~~~~~~~f~~ep~-d--~~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsNg---Sl~i~~ 102 (1381)
T KOG4221|consen 29 CQTTGKSIQANTPLQFLLEPS-D--AMEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSNG---SLYISS 102 (1381)
T ss_pred hhcchhhhhccCcceEEeccc-c--cccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhccCC---ceeEee
Confidence 65554433 334445555555 3 38999999999998655568899999999877644 344444444 677877
Q ss_pred ccc-----CCCeEEEEEEEeC-CeeE-EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCC
Q psy2166 131 VYD-----RDQGIYTCRAWNL-AGET-FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPP 203 (805)
Q Consensus 131 ~~~-----~D~G~Y~C~a~n~-~g~~-~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 203 (805)
+.. -|+|.|+|.|.-. .|.. +..+.|.+. ..+
T Consensus 103 v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a-----------------------------------------~~~ 141 (1381)
T KOG4221|consen 103 VLASKHNKVDEGVYQCLATVEDVGSILSRTAKVALA-----------------------------------------GLA 141 (1381)
T ss_pred ecccccccccCceEEEEEEccccceeecceEEEEec-----------------------------------------ccC
Confidence 766 7899999999865 3433 334444442 234
Q ss_pred ceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcC
Q psy2166 204 QFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNK 283 (805)
Q Consensus 204 ~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~ 283 (805)
.|...+.+. .+..|+.+.|.|.+ .+.|.+.+.|.||..++....++ +...++ .|.|.++++.|.|.|+|.+.++
T Consensus 142 ~f~~~~~~~-t~~~g~ta~f~c~v--n~e~~p~i~w~kn~~pl~~~~r~-i~lpsG--~L~I~~~qp~d~g~yrc~vt~g 215 (1381)
T KOG4221|consen 142 DFALQPEST-TLLYGQTALFSCEV--NAEPVPTIMWLKNDQPLPLDSRV-IVLPSG--ALEISGLQPSDTGEYRCVVTGG 215 (1381)
T ss_pred ccccCccce-eEecCCcEEEEEEE--cCccCceeEEecccccccCCCcE-EEcCCC--cEEecccccCCCceEEEEEecC
Confidence 455555555 38899999999999 67888899999999988877743 344444 6999999999999999999986
Q ss_pred Cee-EEEEEEEEEeccCCCC-CCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCcE
Q psy2166 284 WGQ-AEISVNLECVDKSKGQ-PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361 (805)
Q Consensus 284 ~g~-~~~~~~l~v~~~~~~~-~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~ 361 (805)
... .+..+.|+|...+... ...|...+... .+.+|+++.|.|.+. +.|.|.|.|.|||..|.-.. +.+... +.
T Consensus 216 ~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~-~v~~g~~v~leCvvs--~~p~p~v~Wlrng~~i~~ds-~rivl~-g~ 290 (1381)
T KOG4221|consen 216 ASQRTSNEAELTVLSDPGALNKLVFLDEPSNA-VVVEGDDVVLECVVS--GVPKPSVKWLRNGEKISVDS-YRIVLV-GG 290 (1381)
T ss_pred CcCCccceeEEEecCCcccccceeeecCCCcc-ccccCCcEEEEEEec--CCCCCceEEeeCCeeeeecc-eEEEEe-cc
Confidence 533 3555666665222111 12233344444 488999999999998 99999999999999987543 333322 22
Q ss_pred EEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceee
Q psy2166 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFIT 441 (805)
Q Consensus 362 ~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (805)
..|.|.+++.+|+|.|+|+|.|......+++.|.|.
T Consensus 291 ~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~-------------------------------------------- 326 (1381)
T KOG4221|consen 291 SSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVL-------------------------------------------- 326 (1381)
T ss_pred cceEEeccccccCceEEEEecCCCcccccceEEEEE--------------------------------------------
Confidence 358899999999999999999987777788888875
Q ss_pred eecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEe
Q psy2166 442 QISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLT 521 (805)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~ 521 (805)
.+|.|...+.... ..++.++.|.|.+.
T Consensus 327 ----------------------------------------------------a~P~~~~~p~~l~-A~e~~die~ec~~~ 353 (1381)
T KOG4221|consen 327 ----------------------------------------------------APPGFTKAPTTLV-AHESMDIEFECPVS 353 (1381)
T ss_pred ----------------------------------------------------cCCCCCCCCccee-eeeccceeEeCCCC
Confidence 4566666655554 77899999999999
Q ss_pred eCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeeeeeee------
Q psy2166 522 PVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLI------ 595 (805)
Q Consensus 522 ~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~------ 595 (805)
|.|.|.+.|+|||..+..++.+.+..+++ |.|.-+-..|.|.|+|.+.|..|.....+.|.|...+...
T Consensus 354 --g~p~p~v~w~kNgd~~ipsdy~ki~~~~~---lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~ 428 (1381)
T KOG4221|consen 354 --GKPIPTVRWYKNGDRIIPSDYFKIVGGGN---LRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLP 428 (1381)
T ss_pred --CCCcceEEEEecCcccCcccceEecCCCC---cEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccc
Confidence 77999999999999988777777666555 5666566799999999999999999988888665542210
Q ss_pred -------------------------ecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCC
Q psy2166 596 -------------------------LESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKY 650 (805)
Q Consensus 596 -------------------------~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 650 (805)
...+.+.++|++..... ...+......-+ ..+.+.++...-...++|.|.|..
T Consensus 429 sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~-~rer~~~tss~g-~~~tv~nl~p~t~Y~~rv~A~n~~ 506 (1381)
T KOG4221|consen 429 SAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGD-VRERLQNTSSPG-IQVTVQNLSPLTMYFFRVRAKNEA 506 (1381)
T ss_pred cCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCc-hhhhheeccCCc-eEEEeeecccceeEEEEEeccCcc
Confidence 11122366666422111 111111112222 456677777766677778888999
Q ss_pred cceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCe----EE
Q psy2166 651 GSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM----TV 726 (805)
Q Consensus 651 g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~----~v 726 (805)
|+...+..|.|...| .+|. .+..+....++|.+. ..|++ .|
T Consensus 507 g~g~sS~pLkV~t~p------------------------Egp~---------~~~a~ats~~ti~v~--WepP~~~n~~I 551 (1381)
T KOG4221|consen 507 GSGESSAPLKVTTQP------------------------EGPV---------QLQAYATSPTTILVT--WEPPPFGNGPI 551 (1381)
T ss_pred cCCccCCceEEecCC------------------------CCCc---------cccccccCcceEEEE--ecCCCCCCCCc
Confidence 999999999998643 1222 244556678899998 77777 89
Q ss_pred EEEECCEEcc-CCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 727 EFLYNGKPIE-ASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 727 ~W~~~g~~l~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
+|||...... .+....+.. ....++|+++...+.-.|.|+|.|.+|....+..+.|.-
T Consensus 552 ~~yk~~ys~~~~~~~~~~~~--n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~T 610 (1381)
T KOG4221|consen 552 TGYKLFYSEDDTGKELRVEN--NATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRT 610 (1381)
T ss_pred eEEEEEEEcCCCCceEEEec--CccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEe
Confidence 9999776555 233333333 334799999999999999999999999998888888865
|
|
| >KOG4222|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=371.30 Aligned_cols=450 Identities=26% Similarity=0.397 Sum_probs=351.1
Q ss_pred CCCCCCCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCC--cEEEEEEcC-eEEEEEcCC--CC
Q psy2166 196 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH--RIRTVHAFG-MVVLEILGT--KI 270 (805)
Q Consensus 196 ~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~--~~~~~~~~~-~~~L~i~~~--~~ 270 (805)
......+|.|+..+.+.. +..|+.++|.|.+ .|.|.|+|+|||+|+...... ..++...++ -..|.+..- ..
T Consensus 25 ~r~qd~~p~iiehp~d~v-vs~~~patlnc~a--sG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~ 101 (1281)
T KOG4222|consen 25 LRAQDQPPRIIEHPHDLV-VSKGEPATLNCKA--SGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAG 101 (1281)
T ss_pred cccccCCCceEecchhhh-ccCCCCceeecCC--CCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCccc
Confidence 345557899999998874 8899999999988 799999999999996543221 112223333 223333211 12
Q ss_pred cccEEEEEEEEcCCeeE-EEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEcc-
Q psy2166 271 EDTGVYTCRATNKWGQA-EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIF- 348 (805)
Q Consensus 271 ~d~G~Y~C~~~n~~g~~-~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~- 348 (805)
.|.|.|+|++.|..|.. +....|.+.. .+-.|...+.+.. +..|+.+.|.|.-. .+.|.+.+.|.|+|+++.
T Consensus 102 ~d~G~y~cvasn~~g~avSr~a~L~vav----lrddfrv~prd~~-~a~ge~avlEcgpP-~ghpeptvSw~Kdg~pl~~ 175 (1281)
T KOG4222|consen 102 HDHGVYSCVASNRLGEAVSRGASLIVAV----LRDDFRVSPRDVQ-AAVGEEAVLECGPP-RGHPEPTVSWVKDGKPLDH 175 (1281)
T ss_pred CCCceeEeeecCccceeeecCceEEEEE----echhcccCccccc-ccccceeEEeccCC-CCCCCCcceeecCCCcccc
Confidence 38999999999998876 3444444432 3445566666643 77899999999875 589999999999999987
Q ss_pred -CCCceEEEEeCcEEEEEEcccCcCCceEEEEEEEeCceeeEEE-EEEEEEecccccccCCChhHHHHHHHhhhccCCCC
Q psy2166 349 -HKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTR-ATIKCFGKGGVYLDSLQPESLARIRELENAQGQQP 426 (805)
Q Consensus 349 -~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 426 (805)
....+.++.++ .|.|.+++..|.|.|.|++.|.+|...+. ++|+|.
T Consensus 176 ~~~~~~~lisgG---~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~----------------------------- 223 (1281)
T KOG4222|consen 176 YDVPIIALISGG---NLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ----------------------------- 223 (1281)
T ss_pred ccceeEEEecCC---cEEEeccccCCCceeeeeecccccccccccceeeec-----------------------------
Confidence 33344444444 38899999999999999999999987654 777764
Q ss_pred ccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcc
Q psy2166 427 VAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVT 506 (805)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 506 (805)
++|.|...+.+..
T Consensus 224 -------------------------------------------------------------------e~P~f~~rp~~~~ 236 (1281)
T KOG4222|consen 224 -------------------------------------------------------------------EKPWFWKRPKDLA 236 (1281)
T ss_pred -------------------------------------------------------------------cCCccccccccce
Confidence 6677777777765
Q ss_pred cccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEE
Q psy2166 507 QLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 586 (805)
+..|..+.+.|.+. |.|.|.+.|.|++..++.. |+.+..+.. +|.|..++..|.|.|.|.|.|..|.....+.|
T Consensus 237 -v~~g~~~~f~c~v~--GdP~P~Vrwkk~~~~~P~~-ry~i~~d~q--tl~i~r~tp~deg~y~C~a~n~vG~l~asa~l 310 (1281)
T KOG4222|consen 237 -VLVGAAAEFDCRVG--GDPQPTVRWKKDDPSLPRS-RYSILDDTQ--TLRIDRVTPTDEGTYVCPAENLVGGLEASATL 310 (1281)
T ss_pred -eecccccccccccC--CCCCCceeeeccCCCCCcc-ceeeeeccc--cccccccCCCcccceeeeccccccccccccce
Confidence 88999999999999 8999999999988877765 676666533 49999999999999999999999999999999
Q ss_pred EEeeeeee--------------------eecCCCCeEEEEECCEE-c-------cCCCceEEEeeCCEEEEEeccCCCCC
Q psy2166 587 KCVSKTNL--------------------ILESQLPEVEWFYNGKK-L-------PHGHRYRTFHDFGIVILDILYCYEEN 638 (805)
Q Consensus 587 ~V~~~~~~--------------------~~~~~~p~v~W~~~g~~-l-------~~~~~~~~~~~~~~~~L~i~~~~~~d 638 (805)
+|.+++.+ +.+.|.|.+.|.+.|.. + ..+.+..+...+ .|+|.++...|
T Consensus 311 tV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g---~L~it~v~~~d 387 (1281)
T KOG4222|consen 311 TVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTG---TLTITNVRQSD 387 (1281)
T ss_pred EEecCcccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCC---Ccccccccccc
Confidence 99988764 34568899999997642 2 233444444444 49999999999
Q ss_pred cEEEEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEee
Q psy2166 639 SGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIP 718 (805)
Q Consensus 639 ~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~ 718 (805)
.|.|.|...+.+|.......+.+.+.-. ....+|.|...+.+. +..+|..+.|.|.++
T Consensus 388 ~g~Yvcq~~~~~~ss~~~a~~~qt~~~~--------------------~~rPpp~i~~g~~nQ-tl~v~s~a~l~c~at- 445 (1281)
T KOG4222|consen 388 EGYYVCQTQTSAGSSLTKAYLEQTDVLT--------------------DSRPPPIIEQGPANQ-TLPVGSTASLPCSAT- 445 (1281)
T ss_pred cceEeecccccccccccceeEEEEeeec--------------------cCCCCceeeeccccc-ccccCcccccChhhh-
Confidence 9999999999999988888777765211 013567888899999 899999999999999
Q ss_pred cCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEEe
Q psy2166 719 VGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVW 787 (805)
Q Consensus 719 ~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 787 (805)
|.|.+.+.|+++|..+...+.-......+ .|+|.+...-|.|.|+|+|.+..|+..-+++|.|...
T Consensus 446 -g~P~p~i~wl~dg~~v~~~d~~~s~~~~~--~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~ 511 (1281)
T KOG4222|consen 446 -GAPTPNISWLKDGCNVMNPDSRISQQEIG--SLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKA 511 (1281)
T ss_pred -CCCCCCchhhhcccccccCCcccceeeec--eeeeeeeecCCCcceeeeccCcccccccceeeEhhhc
Confidence 99999999999998777655333233323 7999999999999999999999999999999999874
|
|
| >KOG4221|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=344.39 Aligned_cols=478 Identities=21% Similarity=0.251 Sum_probs=338.1
Q ss_pred chhhhhHHhhhh-----hhcCccccCCCCCC-----------CCcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCc
Q psy2166 35 AAGLEKVQEVEH-----ALAGKYQRQPSGPE-----------ETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNL 98 (805)
Q Consensus 35 ~~g~~~i~~~~~-----~d~g~y~c~~~~~~-----------~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~ 98 (805)
.+|.+.|+++.. .+.|.|+|.+.... .....+.|.... .+..+..|+.+.|.|.+. +.|.+
T Consensus 94 sNgSl~i~~v~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~-~~~t~~~g~ta~f~c~vn--~e~~p 170 (1381)
T KOG4221|consen 94 SNGSLYISSVLASKHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQP-ESTTLLYGQTALFSCEVN--AEPVP 170 (1381)
T ss_pred cCCceeEeeecccccccccCceEEEEEEccccceeecceEEEEecccCccccCc-cceeEecCCcEEEEEEEc--CccCc
Confidence 457777887777 88999999876552 112344444333 367899999999999999 57888
Q ss_pred eEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeE-EEEEEEEEeccccccccccCCCCcchh
Q psy2166 99 KIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGET-FTSTTIYCSTKESLIERTQHPKGEEGL 177 (805)
Q Consensus 99 ~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~p~~~~~~ 177 (805)
.+.|.||.+++..++|+..-.+| .|.|.+++..|.|.|+|.+++..... ...+.|+|...+...
T Consensus 171 ~i~w~kn~~pl~~~~r~i~lpsG---~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~------------ 235 (1381)
T KOG4221|consen 171 TIMWLKNDQPLPLDSRVIVLPSG---ALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGAL------------ 235 (1381)
T ss_pred eeEEecccccccCCCcEEEcCCC---cEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccc------------
Confidence 99999999999988887777776 79999999999999999999874332 445667776322211
Q ss_pred hhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEE
Q psy2166 178 EKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA 257 (805)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~ 257 (805)
..-.|...+... .+.+|+.+.|.|.+ .+.|.|+|.|.|||..|.-.. +++...
T Consensus 236 -----------------------~~~~fl~~p~~~-~v~~g~~v~leCvv--s~~p~p~v~Wlrng~~i~~ds-~rivl~ 288 (1381)
T KOG4221|consen 236 -----------------------NKLVFLDEPSNA-VVVEGDDVVLECVV--SGVPKPSVKWLRNGEKISVDS-YRIVLV 288 (1381)
T ss_pred -----------------------cceeeecCCCcc-ccccCCcEEEEEEe--cCCCCCceEEeeCCeeeeecc-eEEEEe
Confidence 112244555544 48899999999999 799999999999999997665 433333
Q ss_pred cCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcE
Q psy2166 258 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELK 337 (805)
Q Consensus 258 ~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~ 337 (805)
+...|.|.+++.+|+|.|+|.|.|.......++.|.|. .+|.|...+.... ..++.++.|.|.+. +.|.+.
T Consensus 289 -g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~-----a~P~~~~~p~~l~-A~e~~die~ec~~~--g~p~p~ 359 (1381)
T KOG4221|consen 289 -GGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVL-----APPGFTKAPTTLV-AHESMDIEFECPVS--GKPIPT 359 (1381)
T ss_pred -cccceEEeccccccCceEEEEecCCCcccccceEEEEE-----cCCCCCCCCccee-eeeccceeEeCCCC--CCCcce
Confidence 33579999999999999999999966666677777776 5688877776665 77899999999998 789999
Q ss_pred EEEEECCEEccCCCceEEEEeCcEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHH
Q psy2166 338 VEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRE 417 (805)
Q Consensus 338 v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~ 417 (805)
+.|+|||..+..+..+++..++. |.|..+-..|.|.|.|.++|..|.....+.+.|...+- +..+
T Consensus 360 v~w~kNgd~~ipsdy~ki~~~~~---lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~-~~~s----------- 424 (1381)
T KOG4221|consen 360 VRWYKNGDRIIPSDYFKIVGGGN---LRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPA-SASS----------- 424 (1381)
T ss_pred EEEEecCcccCcccceEecCCCC---cEEEEEecccchhhhhhhccCcccccchhhheeccCCc-cccc-----------
Confidence 99999999988877777766654 66777789999999999999999999988886643210 0000
Q ss_pred hhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCc
Q psy2166 418 LENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPK 497 (805)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~ 497 (805)
......++.
T Consensus 425 -----------------------------------------------------------------------~~~~sap~~ 433 (1381)
T KOG4221|consen 425 -----------------------------------------------------------------------DLLPSAPRD 433 (1381)
T ss_pred -----------------------------------------------------------------------CccccCCcc
Confidence 000012222
Q ss_pred eEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEE-CCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEE--EEE
Q psy2166 498 FITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFY-NGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYEC--RAT 574 (805)
Q Consensus 498 ~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C--~a~ 574 (805)
+...+.... +.. -+....|.. +.+.+.++|++ ++..+. . |.......+ ..+++.+ ...++.|.| +|.
T Consensus 434 lv~~~~~sr-fi~-~tw~~p~~~---~g~i~~~~v~~~~~~~~r-e-r~~~tss~g-~~~tv~n--l~p~t~Y~~rv~A~ 503 (1381)
T KOG4221|consen 434 LVANLVSSR-FIQ-LTWRPPAQI---SGNISTYTVFYKVEGDVR-E-RLQNTSSPG-IQVTVQN--LSPLTMYFFRVRAK 503 (1381)
T ss_pred eecccccce-eEE-EeecCcccc---CCCcceEEEEEecCCchh-h-hheeccCCc-eEEEeee--cccceeEEEEEecc
Confidence 222222111 111 111255633 45667899985 333332 1 222222223 4566665 455777755 556
Q ss_pred cCCcceEEEEEEEEeeeee--------------eeecC-CCC----eEEEEECCEEccCCCceEEEeeCCEEEEEeccCC
Q psy2166 575 NKYGSDVTKASLKCVSKTN--------------LILES-QLP----EVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCY 635 (805)
Q Consensus 575 n~~g~~~~~~~l~V~~~~~--------------~~~~~-~~p----~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~ 635 (805)
|.+|....++.|.|..++. +.+.+ +++ .++|||......+.+ ....-+.+...++|.++.
T Consensus 504 n~~g~g~sS~pLkV~t~pEgp~~~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~~~-~~~~~~~n~~e~ti~gL~ 582 (1381)
T KOG4221|consen 504 NEAGSGESSAPLKVTTQPEGPVQLQAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDDTG-KELRVENNATEYTINGLE 582 (1381)
T ss_pred CcccCCccCCceEEecCCCCCccccccccCcceEEEEecCCCCCCCCceEEEEEEEcCCCC-ceEEEecCccEEEeecCC
Confidence 9999999999999987762 11111 222 788888765554222 233334455679999999
Q ss_pred CCCcEEEEEEEEeCCcceEEEEEEEEee
Q psy2166 636 EENSGVYECRATNKYGSDVTKASLKCVS 663 (805)
Q Consensus 636 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 663 (805)
..+...|+|+|.|.+|...++..+.|..
T Consensus 583 k~TeY~~~vvA~N~~G~g~sS~~i~V~T 610 (1381)
T KOG4221|consen 583 KYTEYSIRVVAYNSAGSGVSSADITVRT 610 (1381)
T ss_pred CccceEEEEEEecCCCCCCCCCceEEEe
Confidence 9999999999999999999999888874
|
|
| >KOG4222|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=337.17 Aligned_cols=441 Identities=25% Similarity=0.385 Sum_probs=329.3
Q ss_pred CcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCC---ceEEEecCcEEEEEEcc--cccCCC
Q psy2166 62 TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS---RFKTTADFGFVTLDLTE--VYDRDQ 136 (805)
Q Consensus 62 ~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~---~~~~~~~~~~~~L~I~~--~~~~D~ 136 (805)
...+|.++..+. ++.+..|++++|.|.++ |.|.|+|+|+|+|+....+. +..+..++...-|.+.. -...|.
T Consensus 28 qd~~p~iiehp~-d~vvs~~~patlnc~as--G~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~ 104 (1281)
T KOG4222|consen 28 QDQPPRIIEHPH-DLVVSKGEPATLNCKAS--GDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDH 104 (1281)
T ss_pred ccCCCceEecch-hhhccCCCCceeecCCC--CCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCC
Confidence 345666666555 77889999999999999 79999999999997554332 22223333322333221 112399
Q ss_pred eEEEEEEEeCCeeEEE-EEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccccccccc
Q psy2166 137 GIYTCRAWNLAGETFT-STTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNL 215 (805)
Q Consensus 137 G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v 215 (805)
|.|+|+|+|..|...+ ...|.|... +-.|...++++ .+
T Consensus 105 G~y~cvasn~~g~avSr~a~L~vavl----------------------------------------rddfrv~prd~-~~ 143 (1281)
T KOG4222|consen 105 GVYSCVASNRLGEAVSRGASLIVAVL----------------------------------------RDDFRVSPRDV-QA 143 (1281)
T ss_pred ceeEeeecCccceeeecCceEEEEEe----------------------------------------chhcccCcccc-cc
Confidence 9999999999888644 455555432 12344555553 57
Q ss_pred CCCceEEEEEEEeeCCCCCeEEEEEECCEEccC--CCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeE-EEEEE
Q psy2166 216 SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEA--SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA-EISVN 292 (805)
Q Consensus 216 ~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~-~~~~~ 292 (805)
..|+.+.|.|.- +.+.|.+.+.|.|+|+++.. ...+.++.. | .|.|.++...|+|.|.|++.|..|.. +....
T Consensus 144 a~ge~avlEcgp-P~ghpeptvSw~Kdg~pl~~~~~~~~~lisg-G--~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~ 219 (1281)
T KOG4222|consen 144 AVGEEAVLECGP-PRGHPEPTVSWVKDGKPLDHYDVPIIALISG-G--NLLISNVRKSDEGTYACVATNMVGERESIPAR 219 (1281)
T ss_pred cccceeEEeccC-CCCCCCCcceeecCCCccccccceeEEEecC-C--cEEEeccccCCCceeeeeecccccccccccce
Confidence 899999999964 46899999999999999873 333333333 3 59999999999999999999998875 55667
Q ss_pred EEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCcEEEEEEcccCcC
Q psy2166 293 LECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSH 372 (805)
Q Consensus 293 l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~ 372 (805)
+.|. .+|.|...+.... +..|..+.+.|.+. |.|.|.+.|.+++-.+.. .++.+..+.. +|.|.++...
T Consensus 220 lsv~-----e~P~f~~rp~~~~-v~~g~~~~f~c~v~--GdP~P~Vrwkk~~~~~P~-~ry~i~~d~q--tl~i~r~tp~ 288 (1281)
T KOG4222|consen 220 LSVQ-----EKPWFWKRPKDLA-VLVGAAAEFDCRVG--GDPQPTVRWKKDDPSLPR-SRYSILDDTQ--TLRIDRVTPT 288 (1281)
T ss_pred eeec-----cCCccccccccce-eecccccccccccC--CCCCCceeeeccCCCCCc-cceeeeeccc--cccccccCCC
Confidence 7777 6788888777776 88899999999997 999999999997766653 3555555533 6899999999
Q ss_pred CceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCC
Q psy2166 373 DSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEG 452 (805)
Q Consensus 373 d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (805)
|.|.|.|.+.|..|.....+.++|+
T Consensus 289 deg~y~C~a~n~vG~l~asa~ltV~------------------------------------------------------- 313 (1281)
T KOG4222|consen 289 DEGTYVCPAENLVGGLEASATLTVQ------------------------------------------------------- 313 (1281)
T ss_pred cccceeeeccccccccccccceEEe-------------------------------------------------------
Confidence 9999999999999999999999885
Q ss_pred ceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEE
Q psy2166 453 QSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEW 532 (805)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W 532 (805)
.+|.|...+.+.. +..|..++|.|.+. |.|.|.+.|
T Consensus 314 -----------------------------------------apP~f~kkp~dq~-v~lg~~vt~pc~~~--gnP~PavfW 349 (1281)
T KOG4222|consen 314 -----------------------------------------APPSFGKKPRDQK-VALGGTVTFPCETL--GNPPPAVFW 349 (1281)
T ss_pred -----------------------------------------cCcccccccCccc-cccCceEEeeeecC--CCCCcceEE
Confidence 5666777666665 78899999999999 889999999
Q ss_pred EECCEEc--c------CCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEee------eeeeee--
Q psy2166 533 FYNGKKL--P------HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVS------KTNLIL-- 596 (805)
Q Consensus 533 ~~~g~~l--~------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~------~~~~~~-- 596 (805)
.|.|... . .+.+..+...+ .|+|.+++..|.|.|.|...+..|....-+.+.+.. ++.+++
T Consensus 350 ~keg~q~llf~~~p~~~~~r~svs~~g---~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g 426 (1281)
T KOG4222|consen 350 LKEGSQDLLFSASPPSSNGRGSVSPTG---TLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQG 426 (1281)
T ss_pred eccCcceecccCCCCCcCccceecCCC---CcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeec
Confidence 9987642 1 22333333333 599999999999999999998888876655555432 222221
Q ss_pred -------------------cCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEE
Q psy2166 597 -------------------ESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 657 (805)
Q Consensus 597 -------------------~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 657 (805)
..|.|.+.|+++|-.+........... ...|+|.+....|.|.|+|.|.+..|+...++
T Consensus 427 ~~nQtl~v~s~a~l~c~atg~P~p~i~wl~dg~~v~~~d~~~s~~~--~~~l~i~dl~~~DtG~YTc~as~~~ges~wSa 504 (1281)
T KOG4222|consen 427 PANQTLPVGSTASLPCSATGAPTPNISWLKDGCNVMNPDSRISQQE--IGSLRIRDLKGPDTGRYTCIASDESGESTWSA 504 (1281)
T ss_pred ccccccccCcccccChhhhCCCCCCchhhhcccccccCCcccceee--eceeeeeeeecCCCcceeeeccCcccccccce
Confidence 235679999999877654332211121 23499999999999999999999999999999
Q ss_pred EEEEeecc
Q psy2166 658 SLKCVSKT 665 (805)
Q Consensus 658 ~l~V~~~p 665 (805)
+|.|.+..
T Consensus 505 tl~v~~~~ 512 (1281)
T KOG4222|consen 505 TLTVEKAG 512 (1281)
T ss_pred eeEhhhcC
Confidence 99998643
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.3e-28 Score=242.51 Aligned_cols=283 Identities=22% Similarity=0.375 Sum_probs=221.3
Q ss_pred CCCCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCC-----cEEEEEEc--------CeEEEEE
Q psy2166 199 DGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH-----RIRTVHAF--------GMVVLEI 265 (805)
Q Consensus 199 ~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~-----~~~~~~~~--------~~~~L~i 265 (805)
+...|++...|.... ...|+.++|+|.+...+..+.++.|.++.+.+..-. .+.....+ -...|.+
T Consensus 500 DspkpqI~~qPe~~~-al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L 578 (873)
T KOG4194|consen 500 DSPKPQIVTQPETVS-ALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHL 578 (873)
T ss_pred CCCCcceecCchHhh-hhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeee
Confidence 445677887777664 678999999999865456678999999877443211 11111101 1368999
Q ss_pred cCCCCcccEEEEEEEEcCCeeE-EEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECC
Q psy2166 266 LGTKIEDTGVYTCRATNKWGQA-EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNG 344 (805)
Q Consensus 266 ~~~~~~d~G~Y~C~~~n~~g~~-~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g 344 (805)
.++...|+|.|.|++.|..|.. +..+.++|. ..|.|...|.+.. +..|+.+.|.|.+. |.|.|.|.|.|+|
T Consensus 579 ~nVt~td~grYQCVvtN~FGStysqk~KltV~-----~~PsFtktP~dlt-l~tg~mArl~CaAt--G~P~PeIawqkdg 650 (873)
T KOG4194|consen 579 DNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVN-----QAPSFTKTPEDLT-LRTGQMARLECAAT--GHPRPEIAWQKDG 650 (873)
T ss_pred eeeecccCceEEEEEecccCcchhheeEEEee-----ccCccccCcccce-eecccceeeeeecc--CCCCcceeehhcC
Confidence 9999999999999999999876 666778877 5788888888876 89999999999998 9999999999987
Q ss_pred EE-cc--CCCceEEEEeCcEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhc
Q psy2166 345 KP-IF--HKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENA 421 (805)
Q Consensus 345 ~~-l~--~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~ 421 (805)
-. .. ...+..+..++. .+.|.++..+|.|.|+|.|.|.+|.....+++.|.+
T Consensus 651 gtdFPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e----------------------- 705 (873)
T KOG4194|consen 651 GTDFPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLE----------------------- 705 (873)
T ss_pred CCCCchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeeceEEEEec-----------------------
Confidence 55 33 234556655555 577999999999999999999999999999999854
Q ss_pred cCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEec
Q psy2166 422 QGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQ 501 (805)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~ 501 (805)
.|.|..+
T Consensus 706 -------------------------------------------------------------------------~p~f~~P 712 (873)
T KOG4194|consen 706 -------------------------------------------------------------------------TPSFSIP 712 (873)
T ss_pred -------------------------------------------------------------------------CCccccc
Confidence 4566667
Q ss_pred CCCcccccCCCeEEEEEEEeeCCCCC-cEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcce
Q psy2166 502 ISDVTQLKEGQSAHFEARLTPVTDPD-LVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD 580 (805)
Q Consensus 502 ~~~~~~v~~G~~v~L~C~v~~~g~p~-~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 580 (805)
+.+.. +..|+++.|.|.+. +.|. |...|+|++++|.-..|..... +. -.|.+.+...+|+|.|+|...|..|..
T Consensus 713 L~~~~-V~~get~vlqC~a~--~~~a~pr~~W~k~d~pil~t~rh~f~d-~d-Qllvv~~~~~~daG~yTcem~~~~~~~ 787 (873)
T KOG4194|consen 713 LEDQL-VVVGETLVLQCLAE--GAPADPRLEWFKEDKPILITERHTFPD-GD-QLLVVKENLVEDAGIYTCEMSNTLGTE 787 (873)
T ss_pred ccceE-EEecceEEEEEecC--CCCCCccccccCCCCceEEeecccCCC-CC-eEEEEEehhhhhcceEEEEEEeeccce
Confidence 77766 89999999999999 4454 9999999999885444433222 22 258888888999999999999999998
Q ss_pred EEEEEEEEeeeee
Q psy2166 581 VTKASLKCVSKTN 593 (805)
Q Consensus 581 ~~~~~l~V~~~~~ 593 (805)
.....+.+...+.
T Consensus 788 ~~~i~l~~~~~~~ 800 (873)
T KOG4194|consen 788 RIHICLLVYQKKK 800 (873)
T ss_pred eeEEEEEEeecCC
Confidence 8877777766554
|
|
| >KOG4194|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-27 Score=238.94 Aligned_cols=284 Identities=22% Similarity=0.358 Sum_probs=217.5
Q ss_pred cCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCC-----CCceEEEe-c-------CcEEEEEEc
Q psy2166 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL-----GSRFKTTA-D-------FGFVTLDLT 129 (805)
Q Consensus 63 ~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~-----~~~~~~~~-~-------~~~~~L~I~ 129 (805)
..+|.++..+ .++....|++++|+|.+.+....+.++.|.+|++.... .-++.... . .-...|.+.
T Consensus 501 spkpqI~~qP-e~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~ 579 (873)
T KOG4194|consen 501 SPKPQIVTQP-ETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLD 579 (873)
T ss_pred CCCcceecCc-hHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeee
Confidence 3455554444 36677789999999999865466778999998774331 11111111 0 013369999
Q ss_pred ccccCCCeEEEEEEEeCCeeEE-EEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecc
Q psy2166 130 EVYDRDQGIYTCRAWNLAGETF-TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSE 208 (805)
Q Consensus 130 ~~~~~D~G~Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 208 (805)
+|...|+|.|.|+++|..|+.. ..+.++|. ..|.|...
T Consensus 580 nVt~td~grYQCVvtN~FGStysqk~KltV~-----------------------------------------~~PsFtkt 618 (873)
T KOG4194|consen 580 NVTFTDEGRYQCVVTNHFGSTYSQKAKLTVN-----------------------------------------QAPSFTKT 618 (873)
T ss_pred eeecccCceEEEEEecccCcchhheeEEEee-----------------------------------------ccCccccC
Confidence 9999999999999999998864 46778875 45778888
Q ss_pred cccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEE-ccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeE
Q psy2166 209 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKP-IEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 287 (805)
Q Consensus 209 ~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~-l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~ 287 (805)
|.+.. +..|+.+.|.|.+ .|.|.|+|.|.|+|.. ++.....++........+.|.+++.+|.|.|+|.|.|.+|..
T Consensus 619 P~dlt-l~tg~mArl~CaA--tG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~i 695 (873)
T KOG4194|consen 619 PEDLT-LRTGQMARLECAA--TGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQI 695 (873)
T ss_pred cccce-eecccceeeeeec--cCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccce
Confidence 87774 8899999999988 8999999999998765 554433233322233478899999999999999999999999
Q ss_pred EEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCC-cEEEEEECCEEccCCCceEEEEeCcEEEEEE
Q psy2166 288 EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE-LKVEWFHNGKPIFHKNRVKMVSDFGFVVMDI 366 (805)
Q Consensus 288 ~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~-~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i 366 (805)
+..+++.|.+ .|.+..+..+.. +..|+++.|.|.+. +.|. |.+.|+|+++++.-..+..+..+++ .|.+
T Consensus 696 sanAtL~V~e-----~p~f~~PL~~~~-V~~get~vlqC~a~--~~~a~pr~~W~k~d~pil~t~rh~f~d~dQ--llvv 765 (873)
T KOG4194|consen 696 SANATLTVLE-----TPSFSIPLEDQL-VVVGETLVLQCLAE--GAPADPRLEWFKEDKPILITERHTFPDGDQ--LLVV 765 (873)
T ss_pred eeceEEEEec-----CCcccccccceE-EEecceEEEEEecC--CCCCCccccccCCCCceEEeecccCCCCCe--EEEE
Confidence 9999999985 445555566665 88999999999997 5555 9999999999987666665554444 5778
Q ss_pred cccCcCCceEEEEEEEeCceeeEEEEEEEEEeccc
Q psy2166 367 AYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGG 401 (805)
Q Consensus 367 ~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~ 401 (805)
.+...+|+|.|+|...|..|.......+.++.++.
T Consensus 766 ~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~ 800 (873)
T KOG4194|consen 766 KENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKK 800 (873)
T ss_pred EehhhhhcceEEEEEEeeccceeeEEEEEEeecCC
Confidence 88889999999999999999988888877776554
|
|
| >PHA02785 IL-beta-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-26 Score=234.31 Aligned_cols=233 Identities=19% Similarity=0.202 Sum_probs=166.6
Q ss_pred ccCCCeEEEEEEEe---eCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEE
Q psy2166 508 LKEGQSAHFEARLT---PVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584 (805)
Q Consensus 508 v~~G~~v~L~C~v~---~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 584 (805)
+.+|+.+.|.|.+. ..|.|.++++|+|+|.... +.....++. .|.|.++..+|+|.|+|.|.|..|....++
T Consensus 38 ~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~~~~~~~g~--~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~ 112 (326)
T PHA02785 38 ELENEPVILPCPQINTLSSGYNILDILWEKRGADND---RIIPIDNGS--NMLILNPTQSDSGIYICITKNETYCDMMSL 112 (326)
T ss_pred hhcCCCEEEECCCccccccCCCCceEEEEECCCccc---eEEEccCCc--eEEEcccCcccCeEEEEEEECCCcceEEEE
Confidence 67899999999972 1177889999999985321 222222222 377899999999999999999999888888
Q ss_pred EEEEeeeee-----------------eeecC----------CCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCC
Q psy2166 585 SLKCVSKTN-----------------LILES----------QLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 637 (805)
Q Consensus 585 ~l~V~~~~~-----------------~~~~~----------~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~ 637 (805)
+|+|..... ..+.| +.|.++|++++. + .+.++..... ..|.|.+++.+
T Consensus 113 ~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~~~---~~L~i~~v~~~ 187 (326)
T PHA02785 113 NLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQRTP---GIITIEDVRKN 187 (326)
T ss_pred EEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEecCC---CeEEEeecChh
Confidence 888865321 12333 456999998652 3 3344433222 25999999999
Q ss_pred CcEEEEEEEEeCCcceEEE----EEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEE
Q psy2166 638 NSGVYECRATNKYGSDVTK----ASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE 713 (805)
Q Consensus 638 d~G~Y~C~a~n~~g~~~~~----~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~ 713 (805)
|+|.|+|.|.|.+|..... +.|.|..+. .||.+. .|.+. .+..|+.++|.
T Consensus 188 d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~------------------------~pp~~~-~p~~~-~~~~G~~v~L~ 241 (326)
T PHA02785 188 DAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRI------------------------IPPTMQ-LPEGV-VTSIGSNLTIA 241 (326)
T ss_pred hCeEEEEEEEeccCCEEEeEEEEEEEEEeccC------------------------CCceec-CCCcE-EecCCCcEEEE
Confidence 9999999999998876543 345444311 456654 34555 78889999999
Q ss_pred EEEeecCCCC---eEEEEEECCEEccCCC-----CeEEEee-----C---cEEEEEEcCCCCCCCEEEEEEEEcCCccEE
Q psy2166 714 ASLIPVGDQT---MTVEFLYNGKPIEASH-----RIRTVHA-----F---GMVVLEILGTKIEDTGVYTCRATNKWGQAE 777 (805)
Q Consensus 714 C~~~~~g~p~---~~v~W~~~g~~l~~~~-----~~~~~~~-----~---~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~ 777 (805)
|.+. |.|. +.|.|+|||+.+...+ ++..... . ....|+|.+|+.+|+|.|+|.|.|.+|...
T Consensus 242 C~a~--g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~ 319 (326)
T PHA02785 242 CRVS--LRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISK 319 (326)
T ss_pred EEEE--CCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceE
Confidence 9999 8776 4899999999886432 2222111 0 135799999999999999999999885443
Q ss_pred E
Q psy2166 778 I 778 (805)
Q Consensus 778 ~ 778 (805)
.
T Consensus 320 ~ 320 (326)
T PHA02785 320 T 320 (326)
T ss_pred e
Confidence 3
|
|
| >PHA02785 IL-beta-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-25 Score=228.02 Aligned_cols=257 Identities=19% Similarity=0.239 Sum_probs=176.1
Q ss_pred cCCCceEEEEEEEe---eCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEE
Q psy2166 215 LSEGEIAHFEASLI---PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 291 (805)
Q Consensus 215 v~~g~~~~l~C~~~---~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~ 291 (805)
..+|+.+.|.|.+. ..|.|.++++|+|+|.... +.. ....+ ..|.|.++..+|+|.|+|.+.|..+....++
T Consensus 38 ~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~---~~~-~~~~g-~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~ 112 (326)
T PHA02785 38 ELENEPVILPCPQINTLSSGYNILDILWEKRGADND---RII-PIDNG-SNMLILNPTQSDSGIYICITKNETYCDMMSL 112 (326)
T ss_pred hhcCCCEEEECCCccccccCCCCceEEEEECCCccc---eEE-EccCC-ceEEEcccCcccCeEEEEEEECCCcceEEEE
Confidence 66899999999852 2478889999999985321 111 11222 3578999999999999999999988888888
Q ss_pred EEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEe---ecCCCCcEEEEEECCEEccCCCceEEEEeCcEEEEEEcc
Q psy2166 292 NLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLT---PVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAY 368 (805)
Q Consensus 292 ~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~---~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~ 368 (805)
.|.|.... ++.+...+.+.. +.+|..+.|.|... ..+.|.+.|+|++++. + ...++....+ ..|.|.+
T Consensus 113 ~L~V~~~~---~~~~~~~~~~~~-~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~~~---~~L~i~~ 183 (326)
T PHA02785 113 NLTIVSVS---ESNIDLISYPQI-VNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQRTP---GIITIED 183 (326)
T ss_pred EEEEEecC---CCccceeeccce-ecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEecCC---CeEEEee
Confidence 88886542 232322222232 67899999999721 1257889999988653 3 2334333221 2699999
Q ss_pred cCcCCceEEEEEEEeCceeeEEEE----EEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeec
Q psy2166 369 VQSHDSGEYVCRAWNKYGEDFTRA----TIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQIS 444 (805)
Q Consensus 369 v~~~d~G~Y~C~a~n~~g~~~~~~----~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (805)
+..+|.|.|+|.|.|..|...... .|.|..+
T Consensus 184 v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~--------------------------------------------- 218 (326)
T PHA02785 184 VRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDR--------------------------------------------- 218 (326)
T ss_pred cChhhCeEEEEEEEeccCCEEEeEEEEEEEEEecc---------------------------------------------
Confidence 999999999999999887665433 3333210
Q ss_pred ceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCC
Q psy2166 445 DVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT 524 (805)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g 524 (805)
..||.+.. +. ...+..|+.++|.|.+. |
T Consensus 219 ------------------------------------------------~~pp~~~~-p~-~~~~~~G~~v~L~C~a~--g 246 (326)
T PHA02785 219 ------------------------------------------------IIPPTMQL-PE-GVVTSIGSNLTIACRVS--L 246 (326)
T ss_pred ------------------------------------------------CCCceecC-CC-cEEecCCCcEEEEEEEE--C
Confidence 13344322 22 33367899999999999 4
Q ss_pred CCC---cEEEEEECCEEccCCC-----ceEEEee-----C---CEEEEEEccCCCCCCEEEEEEEEcCCcceEE
Q psy2166 525 DPD---LVVEWFYNGKKLPHGH-----RYRTFHD-----F---GIVILDILYCYEENSGVYECRATNKYGSDVT 582 (805)
Q Consensus 525 ~p~---~~v~W~~~g~~l~~~~-----~~~~~~~-----~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 582 (805)
.|. +.+.|+|||..|...+ ++..... . ....|.|.+++.+|+|.|+|.|.|..|....
T Consensus 247 ~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~~~ 320 (326)
T PHA02785 247 RPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSISKT 320 (326)
T ss_pred CCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCceEe
Confidence 444 5899999999985421 2222110 0 1357999999999999999999998855443
|
|
| >KOG3515|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-25 Score=238.86 Aligned_cols=525 Identities=14% Similarity=0.157 Sum_probs=328.9
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEE-E
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFT-S 153 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~-~ 153 (805)
+..+.+|+.|.|.|.+.+ ++|.+.|+|++.+..+. .|+....+. +|......++.-+.|.|++.|..+.... .
T Consensus 16 ~~~~~~g~~v~l~C~v~~-~pp~~~~eW~h~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~ 89 (741)
T KOG3515|consen 16 TVGLRLGEDVPLPCRVNS-NPPEIDVEWYHSTSGEH--GRYATIADP---TLVTTGDVRDTVAELNCRAFNSVGMPSRCP 89 (741)
T ss_pred ChhhccCCcceeeeecCC-CCCCcceEEEecCcccc--cccccccCC---ceeeecchhhhhhhhhhhhcccccCceecc
Confidence 348899999999999985 57888999999987776 566666554 6888888888899999999988544332 2
Q ss_pred EEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCC
Q psy2166 154 TTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ 233 (805)
Q Consensus 154 ~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p 233 (805)
..+.|..++ .-....... ....+..+.+.|.....+.|
T Consensus 90 ~~l~v~~~p-----------------------------------------a~~~~~~e~-~~~~~~vvqi~c~~~~~~~P 127 (741)
T KOG3515|consen 90 MILDVDYPP-----------------------------------------ACLPELGEI-FQVDKGVVQIICSAKVAGRP 127 (741)
T ss_pred eeeccccCc-----------------------------------------cccccccch-hhhcCCeEEEEEeecCCCCC
Confidence 333333221 111111111 14577889999988778899
Q ss_pred CeEEEEEECCEEccCCCcEEEEEE--------cCeEEEEEcCCCCcccEEEEEEEEcC---CeeEEEEEEEEEeccCCCC
Q psy2166 234 TMTVEFLYNGKPIEASHRIRTVHA--------FGMVVLEILGTKIEDTGVYTCRATNK---WGQAEISVNLECVDKSKGQ 302 (805)
Q Consensus 234 ~~~i~W~k~g~~l~~~~~~~~~~~--------~~~~~L~i~~~~~~d~G~Y~C~~~n~---~g~~~~~~~l~v~~~~~~~ 302 (805)
.+++.|+.++........-..... ...+.|.+.....++.|.|+|.|.+. .+.......+.+.. .
T Consensus 128 ~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~----~ 203 (741)
T KOG3515|consen 128 NPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEA----P 203 (741)
T ss_pred CcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeeccc----c
Confidence 999999998876543221100010 12346778788899999999999984 33333333333322 1
Q ss_pred CCeEEec-CCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCc--EEEEEEcccCcCCceEEEE
Q psy2166 303 PPKFTSH-IKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG--FVVMDIAYVQSHDSGEYVC 379 (805)
Q Consensus 303 ~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~--~~~l~i~~v~~~d~G~Y~C 379 (805)
...+... ......+.+|+.+.|.|.+.+ ++|.+.++|+++.+.+..+....-..++. ...+.+..-..++.-...|
T Consensus 204 ~~~~~~~~~~~~qsF~~g~~inlvc~~~g-g~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc 282 (741)
T KOG3515|consen 204 CKGIGITGAQEQQSFTEGQTINLVCNAQG-GNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKC 282 (741)
T ss_pred cccceecchhhcCcccccceEEEEehhhc-CCcchhhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhc
Confidence 2222222 222234889999999998875 99999999999987765542111111111 1122222222333446779
Q ss_pred EEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEE
Q psy2166 380 RAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEA 459 (805)
Q Consensus 380 ~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (805)
.+.| .+ .....+.+.
T Consensus 283 ~a~n-~~--~~~~~tav~-------------------------------------------------------------- 297 (741)
T KOG3515|consen 283 KASN-LL--AASQITAVQ-------------------------------------------------------------- 297 (741)
T ss_pred cccC-cc--ccceeeecc--------------------------------------------------------------
Confidence 9987 11 111112221
Q ss_pred EEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEc
Q psy2166 460 RLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL 539 (805)
Q Consensus 460 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l 539 (805)
.+|.-.........+..|+...+.|...+ ++|.+.+.|+|+.+..
T Consensus 298 ----------------------------------~~~~~~~Ist~~~~ls~g~s~r~~c~~ss-s~p~~~i~w~~~~~~~ 342 (741)
T KOG3515|consen 298 ----------------------------------VKPTAVPISTSDSGLSSGRSARSSCVSSS-SKPPAHIAWYKDTKMP 342 (741)
T ss_pred ----------------------------------cccccccccCcccccccccccccceeccC-CCCccceeeeccCccc
Confidence 11111112222222788999999999886 7899999999977665
Q ss_pred cCCCceEEE--eeC--CEEEEEEccCCCCCCEEEEEEEEcCCcceEEEE--EEEEeeeeeee------------------
Q psy2166 540 PHGHRYRTF--HDF--GIVILDILYCYEENSGVYECRATNKYGSDVTKA--SLKCVSKTNLI------------------ 595 (805)
Q Consensus 540 ~~~~~~~~~--~~~--~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~--~l~V~~~~~~~------------------ 595 (805)
..+...... .++ ....+.+......|.|.|+|.|.|.......+. .|.+...+.+.
T Consensus 343 ~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~~~ 422 (741)
T KOG3515|consen 343 KGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQAAP 422 (741)
T ss_pred ccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccccCCchhhhhcccceeeccCcccccc
Confidence 433222111 111 123356666778899999999998875544433 33333332210
Q ss_pred ----ecCCCCeEEEEECCEEccCCCc--eEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeecccccc
Q psy2166 596 ----LESQLPEVEWFYNGKKLPHGHR--YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLIL 669 (805)
Q Consensus 596 ----~~~~~p~v~W~~~g~~l~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~ 669 (805)
-.+..+.+.|.+++.++..... +.+.... ..+.+.++.+.|.|.|.|.|+|..|.......+.+..
T Consensus 423 ~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~--~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~------ 494 (741)
T KOG3515|consen 423 LPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGAGA--GLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHT------ 494 (741)
T ss_pred CcccCCCcccchhheecceecccccCceEEeeccc--cccccceeeeccCCcceeeeccCCCceeeEEeecccc------
Confidence 1123569999999988865443 3333333 3355778999999999999999999998887777764
Q ss_pred ccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCC--eEEEEEECCEEccCCCC--eEEEe
Q psy2166 670 ESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQT--MTVEFLYNGKPIEASHR--IRTVH 745 (805)
Q Consensus 670 ~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~--~~v~W~~~g~~l~~~~~--~~~~~ 745 (805)
.|.+...-... ....|+++.+.|... +.|. -++.|.+.|.+...... .....
T Consensus 495 ---------------------sp~~~~~~~~~-~~~~~ns~~~~~~q~--~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~ 550 (741)
T KOG3515|consen 495 ---------------------SPHNHHLQDQV-EGATGNSVDGECMQD--EQPQDQQMHHEPRSGEPPSDQIDQDAPQQQ 550 (741)
T ss_pred ---------------------CCccccccccc-ccCCCCcccceeecc--ccccchhhhcccccCCCCcccccccccccc
Confidence 34444433334 677888899999998 5554 58999998876543211 11122
Q ss_pred eCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 746 ~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
......|.+.....-.+|.|.|.|.|..--+.....|.+
T Consensus 551 ~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~ 589 (741)
T KOG3515|consen 551 LMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKA 589 (741)
T ss_pred cCCccceeecccccccccceEEeecCCCCccccceEEEe
Confidence 223346888888888899999999992223333334444
|
|
| >KOG3515|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-21 Score=207.72 Aligned_cols=570 Identities=15% Similarity=0.092 Sum_probs=330.6
Q ss_pred hhhHHhhhhhhcCccccCCCCCCCCc----------CCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCE
Q psy2166 38 LEKVQEVEHALAGKYQRQPSGPEETF----------AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGK 107 (805)
Q Consensus 38 ~~~i~~~~~~d~g~y~c~~~~~~~~~----------~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~ 107 (805)
.+..+.......++|.|.+.+..... -+|.-.... .......+..+.+.|.+...+.|.+.+.|..++.
T Consensus 60 ~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~~~~-~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r 138 (741)
T KOG3515|consen 60 TLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACLPEL-GEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNR 138 (741)
T ss_pred ceeeecchhhhhhhhhhhhcccccCceecceeeccccCccccccc-cchhhhcCCeEEEEEeecCCCCCCcceeeeeccE
Confidence 34556666777889999877553221 122211111 1335567889999998877789999999999875
Q ss_pred ecCCCC--ceEEE--ec----CcEEEEEEcccccCCCeEEEEEEEeC---CeeEEEEEEEEEeccccccccccCCCCcch
Q psy2166 108 PLELGS--RFKTT--AD----FGFVTLDLTEVYDRDQGIYTCRAWNL---AGETFTSTTIYCSTKESLIERTQHPKGEEG 176 (805)
Q Consensus 108 ~i~~~~--~~~~~--~~----~~~~~L~I~~~~~~D~G~Y~C~a~n~---~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~ 176 (805)
-..... +.... .- .....|.+...+.+|.|.|+|.|.+. .+.......+.|..+.
T Consensus 139 ~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~-------------- 204 (741)
T KOG3515|consen 139 AELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPC-------------- 204 (741)
T ss_pred EeecccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeeccccc--------------
Confidence 443221 11000 00 11235888888999999999999884 2222333333332211
Q ss_pred hhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEE
Q psy2166 177 LEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 256 (805)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~ 256 (805)
.............+.+|+.+.|.|.+. .+.|.++++||++...+..........
T Consensus 205 -------------------------~~~~~~~~~~~qsF~~g~~inlvc~~~-gg~P~~~~~w~~~s~~~~~~sl~~~~~ 258 (741)
T KOG3515|consen 205 -------------------------KGIGITGAQEQQSFTEGQTINLVCNAQ-GGNPSQQQTWYKDSRPQSESSLLSQEP 258 (741)
T ss_pred -------------------------ccceecchhhcCcccccceEEEEehhh-cCCcchhhhhccccccchhhhcccCCC
Confidence 111112222223488999999999654 689999999999987765531111111
Q ss_pred EcC--eEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCC
Q psy2166 257 AFG--MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDP 334 (805)
Q Consensus 257 ~~~--~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p 334 (805)
.+. .+.+.+..-..++.-...|.+.| ..... ..+.+. .++.-.....+...+..|+...+.|...+ +.|
T Consensus 259 sg~~v~~~~~~~~~r~~~~~~~kc~a~n-~~~~~--~~tav~-----~~~~~~~Ist~~~~ls~g~s~r~~c~~ss-s~p 329 (741)
T KOG3515|consen 259 SGDTVSSTLVLRVGRQDLQAQLKCKASN-LLAAS--QITAVQ-----VKPTAVPISTSDSGLSSGRSARSSCVSSS-SKP 329 (741)
T ss_pred CCCcccccccccccccchhhhhhccccC-ccccc--eeeecc-----cccccccccCcccccccccccccceeccC-CCC
Confidence 111 23455555555556677899998 12111 112222 11211111112222778999999998874 888
Q ss_pred CcEEEEEECCEEccCCCceE-EEEeC---cEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChh
Q psy2166 335 ELKVEWFHNGKPIFHKNRVK-MVSDF---GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPE 410 (805)
Q Consensus 335 ~~~v~W~~~g~~l~~~~~~~-~~~~~---~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~ 410 (805)
.+.+.|+++........... -.... ....+.+-.....|.|.|.|.+.+.......+....+.
T Consensus 330 ~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~------------- 396 (741)
T KOG3515|consen 330 PAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLP------------- 396 (741)
T ss_pred ccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceecc-------------
Confidence 89999999655443221110 00111 11235556667889999999998877444443333221
Q ss_pred HHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccC
Q psy2166 411 SLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAA 490 (805)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 490 (805)
T Consensus 397 -------------------------------------------------------------------------------- 396 (741)
T KOG3515|consen 397 -------------------------------------------------------------------------------- 396 (741)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc--eEEEeeCCEEEEEEccCCCCCCEE
Q psy2166 491 PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR--YRTFHDFGIVILDILYCYEENSGV 568 (805)
Q Consensus 491 ~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~ 568 (805)
+..+|.|...-.......+++.....-.+.+ .++.+.+.|.+++.++....+ +.+....+ .+.+.++...|.|.
T Consensus 397 -~l~~p~~L~~~~~~v~~~e~d~~~~~~~~~~-~p~~~~~~w~~~~~~~~~~~g~~~~v~~~~~--~~s~~~v~~~d~g~ 472 (741)
T KOG3515|consen 397 -VLPSPAFLVRHKTAVVAMEQDHQAAPLPVRG-APAERTFYWTFRLYKLSQVDGGVVRVGAGAG--LGSGVNVSRSDGGS 472 (741)
T ss_pred -ccCCchhhhhcccceeeccCccccccCcccC-CCcccchhheecceecccccCceEEeecccc--ccccceeeeccCCc
Confidence 1222333222111111334444444333433 467789999999988865443 33333332 35567788999999
Q ss_pred EEEEEEcCCcceEEEEEEEEeeeeeeeecC----------------------CCCeEEEEECCEEccCCCc--eEEEeeC
Q psy2166 569 YECRATNKYGSDVTKASLKCVSKTNLILES----------------------QLPEVEWFYNGKKLPHGHR--YRTFHDF 624 (805)
Q Consensus 569 Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~----------------------~~p~v~W~~~g~~l~~~~~--~~~~~~~ 624 (805)
|.|.|.|..|.......+-+...+.+.-.. ..-.+.|.+.|.+..+... .......
T Consensus 473 y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~~~~~~~~~~~~ 552 (741)
T KOG3515|consen 473 YGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQIDQDAPQQQLM 552 (741)
T ss_pred ceeeeccCCCceeeEEeeccccCCcccccccccccCCCCcccceeeccccccchhhhcccccCCCCcccccccccccccC
Confidence 999999999999888887777655431110 1126788888876643211 1111112
Q ss_pred CEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCccccc
Q psy2166 625 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNL 704 (805)
Q Consensus 625 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v 704 (805)
....+.+.......+|+|.|.+.+..-.......|.+...+ .++ ..+|.+.......
T Consensus 553 ~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~~s~~--~v~------------------~~tp~~~~~~~g~--- 609 (741)
T KOG3515|consen 553 AHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKAYSAL--IVT------------------VRTPNMYTAQEGC--- 609 (741)
T ss_pred CccceeecccccccccceEEeecCCCCccccceEEEecccc--ccc------------------ccCCceeeeccCc---
Confidence 23447777777777899999999832222233334433211 111 0233333222222
Q ss_pred CCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEE--Eee---CcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEE
Q psy2166 705 SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT--VHA---FGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 779 (805)
Q Consensus 705 ~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~--~~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~ 779 (805)
..++..|.+. |.|.+.++|.|++.....+.++.. .+. .......+..+...|.+ -.|++.|.+|.+..+
T Consensus 610 ---v~as~~~~a~--~~~~~~~~~~k~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~y~-~~c~t~n~lg~~~v~ 683 (741)
T KOG3515|consen 610 ---VNASDDCVAS--GVPSTSFTTAKTPLQTTEGPHIREKATQQGQTHSSSEWILNHIDGSDYE-NGCTTQNLLGSDHVS 683 (741)
T ss_pred ---ccccccceec--ccccceeecccCCCcccCCceEEEeeeeccccccccccccCCcchhhhc-ceeeecccCCCcccc
Confidence 1799999777 999999999999876444443321 111 12334666777777877 999999999988877
Q ss_pred EEEE
Q psy2166 780 VNLE 783 (805)
Q Consensus 780 ~~l~ 783 (805)
..+.
T Consensus 684 ~~~~ 687 (741)
T KOG3515|consen 684 GAIH 687 (741)
T ss_pred ceec
Confidence 6544
|
|
| >PHA02826 IL-1 receptor-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.2e-18 Score=164.03 Aligned_cols=160 Identities=16% Similarity=0.163 Sum_probs=115.4
Q ss_pred CceecCCCcEEEEEEEecCC---------CCCceEEEEECCEec--C-CCCc---e--EEEe-cCcEEEEEEcccccCCC
Q psy2166 75 EFKLGEAQPLHLEAQVEPKN---------DPNLKIEWIFNGKPL--E-LGSR---F--KTTA-DFGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~---------~p~~~v~W~k~g~~i--~-~~~~---~--~~~~-~~~~~~L~I~~~~~~D~ 136 (805)
.+.+.+|+++.|.|.+.+.. ...+.|.|+|++... . .+.+ . .... ..+..+|.|.+++.+|+
T Consensus 31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~Ds 110 (227)
T PHA02826 31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDE 110 (227)
T ss_pred eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHC
Confidence 46889999999999986311 245699999987542 1 1111 0 0000 11223899999999999
Q ss_pred eEEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccC
Q psy2166 137 GIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLS 216 (805)
Q Consensus 137 G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~ 216 (805)
|.|+|.|+|..+.......|.|.... . + ..+.
T Consensus 111 G~Y~C~a~N~~~~~~~~i~L~V~~~~-----------------------------------------~------~-~~~~ 142 (227)
T PHA02826 111 GIYICTISSGNICEESTIRLTFDSGT-----------------------------------------I------N-YQFN 142 (227)
T ss_pred EEEEEEEEECCcceEEEEEEEEecCC-----------------------------------------c------c-ceEe
Confidence 99999999988877777777773210 0 0 1367
Q ss_pred CCceEEEEEEEeeC---CCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCC
Q psy2166 217 EGEIAHFEASLIPV---GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKW 284 (805)
Q Consensus 217 ~g~~~~l~C~~~~~---~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 284 (805)
+|+.+.|.|.+... +.|.|+|+|||+|++|....++.... +...|.|.+++.+|+|.|+|.|....
T Consensus 143 ~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~--~~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 143 SGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRN--NNSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred cCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeC--CCCEEEECcCCHHhCEEEEEEEEEeE
Confidence 89999999987321 34679999999999998666654332 33479999999999999999999754
|
|
| >cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-18 Score=144.54 Aligned_cols=97 Identities=24% Similarity=0.297 Sum_probs=88.5
Q ss_pred CeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEc
Q psy2166 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 771 (805)
Q Consensus 692 P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N 771 (805)
|.|...+.++ .+..|+.+.|.|.+. |.|+|.+.|+|+|++|..+.++++......+.|.|.++.++|+|.|+|.|.|
T Consensus 1 p~~~~~p~~~-~v~~G~~v~l~C~~~--G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N 77 (98)
T cd05762 1 PQIIQFPEDM-KVRAGESVELFCKVT--GTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVEN 77 (98)
T ss_pred CceEECCcCE-EEECCCEEEEEEEEc--ccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEc
Confidence 5677788888 999999999999999 9999999999999999988888877777778999999999999999999999
Q ss_pred CCccEEEEEEEEEEEeCCCc
Q psy2166 772 KWGQAEISVNLECVVWSPSQ 791 (805)
Q Consensus 772 ~~G~~~~~~~l~V~~~~~~~ 791 (805)
.+|.+..+++|+|+..|.++
T Consensus 78 ~~G~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 78 KLGSRQAQVNLTVVDKPDPP 97 (98)
T ss_pred CCCceeEEEEEEEecCCCCC
Confidence 99999999999998766543
|
Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has |
| >PHA02826 IL-1 receptor-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.3e-17 Score=158.16 Aligned_cols=139 Identities=17% Similarity=0.179 Sum_probs=103.7
Q ss_pred CCeEEEEECCEEc--c-CCCce--E---EEe-eCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeeccccccc
Q psy2166 600 LPEVEWFYNGKKL--P-HGHRY--R---TFH-DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILE 670 (805)
Q Consensus 600 ~p~v~W~~~g~~l--~-~~~~~--~---~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~ 670 (805)
.+.+.|+|++... . .+.+. . ... .+....|.|.+++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus 62 ~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~------- 134 (227)
T PHA02826 62 SYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDS------- 134 (227)
T ss_pred CccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEec-------
Confidence 3589999988652 1 11110 0 000 01123599999999999999999999998888888888852
Q ss_pred cccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeec---CCCCeEEEEEECCEEccCCCCeEEEeeC
Q psy2166 671 SQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPV---GDQTMTVEFLYNGKPIEASHRIRTVHAF 747 (805)
Q Consensus 671 ~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~---g~p~~~v~W~~~g~~l~~~~~~~~~~~~ 747 (805)
++ .+. .+.+|+.+.|.|.+... |.|.|.|+|+|||+++..+.++.+..++
T Consensus 135 --------------------~~------~~~-~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~~ 187 (227)
T PHA02826 135 --------------------GT------INY-QFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNNN 187 (227)
T ss_pred --------------------CC------ccc-eEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCCC
Confidence 11 123 67789999999998611 2467999999999999888887655444
Q ss_pred cEEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy2166 748 GMVVLEILGTKIEDTGVYTCRATNKWG 774 (805)
Q Consensus 748 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G 774 (805)
+ +|.|.+++.+|+|.|+|.|+..++
T Consensus 188 ~--~L~I~~V~~~DsG~YtC~a~~~~~ 212 (227)
T PHA02826 188 S--TLVIKSATHDDSGIYTCNLRFNKN 212 (227)
T ss_pred C--EEEECcCCHHhCEEEEEEEEEeEC
Confidence 4 799999999999999999999764
|
|
| >cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.6e-17 Score=131.31 Aligned_cols=88 Identities=22% Similarity=0.354 Sum_probs=77.9
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 770 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 770 (805)
||.|...+.+. .+.+|+.+.|.|.+. |+|.|.|+|+|++..+....++. ..++ .|.|.++..+|+|.|+|.|.
T Consensus 1 ~p~i~~~~~~~-~~~~G~~v~l~C~~~--G~P~P~v~W~k~~~~~~~~~~~~--~~~~--~L~I~~v~~~D~G~Y~C~A~ 73 (88)
T cd05851 1 PADINVKFKDT-YALKGQNVTLECFAL--GNPVPVIRWRKILEPMPATAEIS--MSGA--VLKIFNIQPEDEGTYECEAE 73 (88)
T ss_pred CCceEEccccE-EEeCCCcEEEEEEec--ccCCCEEEEEECCcCCCCCCEEe--cCCC--EEEECcCChhhCEEEEEEEE
Confidence 58889999998 999999999999999 99999999999999887654433 2333 79999999999999999999
Q ss_pred cCCccEEEEEEEEEE
Q psy2166 771 NKWGQAEISVNLECV 785 (805)
Q Consensus 771 N~~G~~~~~~~l~V~ 785 (805)
|.+|.+..+++|.|+
T Consensus 74 N~~G~~~~~~~l~V~ 88 (88)
T cd05851 74 NIKGKDKHQARVYVQ 88 (88)
T ss_pred cCCCceEEEEEEEEC
Confidence 999999999999884
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-16 Score=129.93 Aligned_cols=91 Identities=27% Similarity=0.376 Sum_probs=83.3
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
.||+|...|.+. .+.+|+.+.|.|.+. |+|.|.+.|+|+|..+..+.++.+........|.|.++..+|+|.|+|.|
T Consensus 2 ~~~~~~~~p~~~-~~~~G~~~~L~C~~~--g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 78 (92)
T cd05747 2 LPATILTKPRSL-TVSEGESARFSCDVD--GEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVV 78 (92)
T ss_pred CCCcccccCccE-EEeCCCcEEEEEEEe--ecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEE
Confidence 578899999888 999999999999999 99999999999999998888887776666779999999999999999999
Q ss_pred EcCCccEEEEEEEE
Q psy2166 770 TNKWGQAEISVNLE 783 (805)
Q Consensus 770 ~N~~G~~~~~~~l~ 783 (805)
.|.+|..+.+++|+
T Consensus 79 ~N~~G~~~~~~~l~ 92 (92)
T cd05747 79 ENSEGKQEAQFTLT 92 (92)
T ss_pred EcCCCCEeEEEEeC
Confidence 99999999988874
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. |
| >cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK) | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.1e-16 Score=129.91 Aligned_cols=95 Identities=22% Similarity=0.358 Sum_probs=84.9
Q ss_pred CceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEc
Q psy2166 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATN 575 (805)
Q Consensus 496 P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 575 (805)
|.|...+.+.. +..|+.++|.|.+. |.|.+.+.|+|||++|..+.++.+......+.|.|.++..+|+|.|+|.|.|
T Consensus 1 p~~~~~p~~~~-v~~G~~v~l~C~~~--G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N 77 (98)
T cd05762 1 PQIIQFPEDMK-VRAGESVELFCKVT--GTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVEN 77 (98)
T ss_pred CceEECCcCEE-EECCCEEEEEEEEc--ccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEc
Confidence 55666665554 89999999999999 8899999999999999888788877777778999999999999999999999
Q ss_pred CCcceEEEEEEEEeeeee
Q psy2166 576 KYGSDVTKASLKCVSKTN 593 (805)
Q Consensus 576 ~~g~~~~~~~l~V~~~~~ 593 (805)
..|....++.|.|...|.
T Consensus 78 ~~G~~~~~~~l~V~~~P~ 95 (98)
T cd05762 78 KLGSRQAQVNLTVVDKPD 95 (98)
T ss_pred CCCceeEEEEEEEecCCC
Confidence 999999999999998775
|
Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has |
| >PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.2e-16 Score=128.63 Aligned_cols=90 Identities=36% Similarity=0.542 Sum_probs=85.5
Q ss_pred CeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEc
Q psy2166 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 771 (805)
Q Consensus 692 P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N 771 (805)
|+|...+.+. .+.+|+.+.|.|.+. |.|.+.+.|+++|..+..+.++.+...++...|.|.++..+|+|.|+|.|.|
T Consensus 1 P~~~~~~~~~-~v~~G~~~~l~c~~~--~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n 77 (90)
T PF07679_consen 1 PVFTKKPKDV-TVKEGESVTLECEVS--GNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASN 77 (90)
T ss_dssp EEEEEESSEE-EEETTSEEEEEEEEE--ESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEE
T ss_pred CEEEEecCCE-EEeCCCEEEEEEEEE--eCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEE
Confidence 6788888888 999999999999999 8899999999999999999999998888999999999999999999999999
Q ss_pred CCccEEEEEEEEE
Q psy2166 772 KWGQAEISVNLEC 784 (805)
Q Consensus 772 ~~G~~~~~~~l~V 784 (805)
..|..+.++.|.|
T Consensus 78 ~~g~~~~~~~l~V 90 (90)
T PF07679_consen 78 SSGEATASVNLTV 90 (90)
T ss_dssp TTEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEC
Confidence 9999999999987
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A .... |
| >cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.8e-16 Score=125.35 Aligned_cols=80 Identities=24% Similarity=0.345 Sum_probs=72.6
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCC-CCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
.+.+|+.+.|.|.+. |.|.|.|.|+|+|+++... .++.+........|.|.++.++|+|.|+|.|.|.+|+++.++.
T Consensus 6 ~v~~G~~v~l~c~~~--G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 6 VVVAGNKLRLDVPIS--GEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEcCCEEEEEeeEe--ecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 789999999999999 9999999999999999764 4677666666778999999999999999999999999999998
Q ss_pred EEE
Q psy2166 782 LEC 784 (805)
Q Consensus 782 l~V 784 (805)
|.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 876
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. |
| >cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.7e-16 Score=121.56 Aligned_cols=73 Identities=23% Similarity=0.280 Sum_probs=64.4
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccC-CCCeEEEee-CcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEA-SHRIRTVHA-FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~-~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
+.|.|.+. |.|.|.|.|+|+|+.+.. +.++.+..+ .+..+|.|.++..+|+|.|+|.|.|.+|..+.+++|.|
T Consensus 1 v~l~C~v~--G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQIS--AIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEE--ecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 57999999 999999999999999874 467766544 45568999999999999999999999999999999986
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. |
| >cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.3e-16 Score=127.69 Aligned_cols=80 Identities=24% Similarity=0.382 Sum_probs=72.8
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEee-CcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA-FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
++.+|+++.|.|.+. |.|.|.|.|+|+|+++..+.++.+... +....|.|.++..+|+|.|+|.|.|.+|.++..+.
T Consensus 12 ~v~~G~~v~L~C~v~--G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (92)
T cd05737 12 TIMEGKTLNLTCTVF--GDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVT 89 (92)
T ss_pred EEeCCCcEEEEEEEE--ecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEE
Confidence 899999999999999 999999999999999998888776544 44678999999999999999999999999999988
Q ss_pred EEE
Q psy2166 782 LEC 784 (805)
Q Consensus 782 l~V 784 (805)
|.|
T Consensus 90 v~v 92 (92)
T cd05737 90 VSV 92 (92)
T ss_pred EeC
Confidence 876
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. |
| >cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.1e-16 Score=128.03 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=70.9
Q ss_pred ccCCCCeEEEEEEEeecC-CCCeEEEEEECCEEccCCCCeEEEeeC-----cEEEEEEcCCCCCCCEEEEEEEEcCCccE
Q psy2166 703 NLSEGEIAHFEASLIPVG-DQTMTVEFLYNGKPIEASHRIRTVHAF-----GMVVLEILGTKIEDTGVYTCRATNKWGQA 776 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g-~p~~~v~W~~~g~~l~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 776 (805)
.+.+|+.+.|.|.+. | +|+|.+.|+|||.+|.......+.... ....|.|.+++.+|+|.|+|.|+|..|..
T Consensus 14 ~v~~G~~v~L~c~v~--g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~ 91 (101)
T cd04975 14 FVNLGENLNLVVEVE--AYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91 (101)
T ss_pred EEECCCCEEEEEEEE--ecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence 899999999999999 8 899999999999999865554333321 13679999999999999999999999999
Q ss_pred EEEEEEEEEE
Q psy2166 777 EISVNLECVV 786 (805)
Q Consensus 777 ~~~~~l~V~~ 786 (805)
+.++.|.|.+
T Consensus 92 ~~t~~L~V~v 101 (101)
T cd04975 92 SLTFELYVNV 101 (101)
T ss_pred EEEEEEEEEC
Confidence 9999999864
|
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes |
| >cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.7e-16 Score=119.15 Aligned_cols=73 Identities=26% Similarity=0.297 Sum_probs=66.4
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
|+.+.|.|.+. |.|.|.|.|+|++..+..+.++.+..+ + .|.|.++..+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 G~~~~l~C~~~--g~P~p~v~W~k~~~~l~~~~r~~~~~~-g--~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPK--AAPKPKFSWSKGTELLVNNSRISIWDD-G--SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecc--eeCCCEEEEEeCCEecccCCCEEEcCC-C--EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 78999999999 999999999999999888888776443 3 6999999999999999999999999999999976
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-15 Score=118.63 Aligned_cols=73 Identities=22% Similarity=0.333 Sum_probs=63.9
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCC-CCeEEEeeC-cEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTVHAF-GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
+.|.|.+. |.|.|.|+|+|++..+..+ .++.+..++ +..+|.|.++..+|+|.|+|.|.|.+|+.+.+++|.|
T Consensus 1 v~l~C~v~--G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVS--GVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEe--EecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 57999999 9999999999999998754 566665443 4557999999999999999999999999999999986
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. |
| >cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-15 Score=122.89 Aligned_cols=85 Identities=21% Similarity=0.239 Sum_probs=72.8
Q ss_pred cCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccE
Q psy2166 697 EFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 776 (805)
Q Consensus 697 ~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 776 (805)
.+.+. .+.+|+.+.|.|.+. |+|.|.+.|+++|..+................|.|.+++.+|.|.|+|.|.|.+|+.
T Consensus 6 ~p~~~-~v~~G~~v~l~C~~~--G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~ 82 (90)
T cd04972 6 GPNAT-VVYEGGTATIRCTAE--GSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQA 82 (90)
T ss_pred CCcCE-EEcCCCcEEEEEEEE--EcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCce
Confidence 34555 799999999999999 999999999999998876655433444455689999999999999999999999999
Q ss_pred EEEEEEEE
Q psy2166 777 EISVNLEC 784 (805)
Q Consensus 777 ~~~~~l~V 784 (805)
+.+++|.|
T Consensus 83 ~~~~~L~v 90 (90)
T cd04972 83 NVSVQVTV 90 (90)
T ss_pred eEEEEEeC
Confidence 99999875
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo |
| >cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-15 Score=119.86 Aligned_cols=74 Identities=23% Similarity=0.385 Sum_probs=65.9
Q ss_pred CCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 706 EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
+|+++.|.|.+. |+|.|.|+|+|+|..+....++.+.. .+ +|.|.++..+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 eG~~v~l~C~~~--g~P~p~i~W~k~g~~~~~~~~~~~~~-~~--~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQ--GYPQPVIAWTKGGSQLSVDRRHLVLS-SG--TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECC--EecCCEEEEEECCEECCCCCCeEEcc-CC--eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 699999999998 99999999999999988776655433 33 7999999999999999999999999999999876
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-15 Score=124.67 Aligned_cols=80 Identities=24% Similarity=0.324 Sum_probs=69.9
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCC-CCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
.+..|+++.|.|.+. |.|.|.|.|+|+|..+... .++....++ ..|+|.+++.+|+|.|+|.|.|.+|..+.++.
T Consensus 14 ~~~~G~~v~L~C~~~--g~P~p~v~W~k~g~~~~~~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (95)
T cd05730 14 TANLGQSVTLACDAD--GFPEPTMTWTKDGEPIESGEEKYSFNEDG--SEMTILDVDKLDEAEYTCIAENKAGEQEAEIH 89 (95)
T ss_pred EEeCCCCEEEEEecc--EeCCCEEEEEECCEECcCCCCEEEEeCCC--CEEEECCCChhhCEEEEEEEEcCCCeEEEEEE
Confidence 789999999999999 9999999999999998776 444333332 37999999999999999999999999999999
Q ss_pred EEEEE
Q psy2166 782 LECVV 786 (805)
Q Consensus 782 l~V~~ 786 (805)
|+|.+
T Consensus 90 L~V~~ 94 (95)
T cd05730 90 LKVFA 94 (95)
T ss_pred EEEEe
Confidence 99975
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the |
| >cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.1e-15 Score=124.78 Aligned_cols=90 Identities=21% Similarity=0.371 Sum_probs=74.6
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEE--CCEEccC-----CCCeEEEeeCcEEEEEEcCCCCCCCE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY--NGKPIEA-----SHRIRTVHAFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g~~l~~-----~~~~~~~~~~~~~~L~i~~v~~~d~G 763 (805)
+|+|.. +.+. .+.+|+.++|.|.+. |.|.|.|+|+| +|..+.. +.++.+....+...|+|.+++.+|+|
T Consensus 2 ~p~i~~-~~~~-~~~~G~~v~l~C~~~--G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G 77 (98)
T cd05870 2 QPHIIQ-LKNE-TTVENGAATLSCKAE--GEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSG 77 (98)
T ss_pred CCEEEe-eccE-EEcCCCcEEEEEecc--cCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCE
Confidence 577765 5677 899999999999998 99999999999 4554432 24666554455668999999999999
Q ss_pred EEEEEEEcCCccEEEEEEEEE
Q psy2166 764 VYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 764 ~Y~C~a~N~~G~~~~~~~l~V 784 (805)
.|+|.|.|.+|....++.|.|
T Consensus 78 ~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 78 RYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEEEeccCCcceeEEEEeC
Confidence 999999999999999999876
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-15 Score=124.01 Aligned_cols=91 Identities=21% Similarity=0.257 Sum_probs=75.5
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCC-----CCeEEEeeCcEEEEEEcCCCCCCCEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-----HRIRTVHAFGMVVLEILGTKIEDTGVY 765 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~-----~~~~~~~~~~~~~L~i~~v~~~d~G~Y 765 (805)
+|.|...+... .+..|+.++|.|.+. |.|.|.|+|+++++.+... .++.+........|.|.+++.+|+|.|
T Consensus 2 ~p~i~~~~~~~-~~~~g~~v~l~C~~~--G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y 78 (97)
T cd05869 2 KPKITYVENQT-AMELEEQITLTCEAS--GDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEY 78 (97)
T ss_pred CceEEEccCce-EEEcCCCEEEEEEee--EeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEE
Confidence 47777776666 666789999999999 9999999999999877543 234444444556899999999999999
Q ss_pred EEEEEcCCccEEEEEEEEE
Q psy2166 766 TCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 766 ~C~a~N~~G~~~~~~~l~V 784 (805)
+|.|.|.+|.++.++.|+|
T Consensus 79 ~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 79 LCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEecCCCCeeEEEEEEC
Confidence 9999999999999999986
|
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr |
| >cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-15 Score=116.90 Aligned_cols=74 Identities=26% Similarity=0.381 Sum_probs=68.1
Q ss_pred eEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 709 IAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 709 ~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
++.|.|.+. |.|.|.+.|+|+|..+..+.++.+........|.|.++..+|+|.|+|.|.|.+|.++.+++|.|
T Consensus 1 ~~~l~c~~~--G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPIS--GRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEe--eeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 478999999 99999999999999998888888777777789999999999999999999999999999999876
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN- |
| >cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.4e-15 Score=119.15 Aligned_cols=80 Identities=21% Similarity=0.336 Sum_probs=67.8
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEccCC-CCeEEEe-e---CcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTVH-A---FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~-~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
|+.++|.|.+. |.|++.|+|+|++..+..+ .++.+.. . .....|.|.++..+|+|.|+|.|.|.+|..+.++.
T Consensus 1 g~~~~l~C~~~--g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~ 78 (88)
T cd05735 1 GQKKEMSCTAH--GEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQ 78 (88)
T ss_pred CCeEEEEEEEE--CCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEE
Confidence 78999999999 9999999999999988654 3554432 1 22367999999999999999999999999999999
Q ss_pred EEEEEeC
Q psy2166 782 LECVVWS 788 (805)
Q Consensus 782 l~V~~~~ 788 (805)
|+|+..|
T Consensus 79 L~V~~~P 85 (88)
T cd05735 79 LTVQEPP 85 (88)
T ss_pred EEEeCCC
Confidence 9997643
|
Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.7e-15 Score=123.65 Aligned_cols=82 Identities=18% Similarity=0.192 Sum_probs=70.9
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEee------CcEEEEEEcCCCCCCCEEEEEEEEcCCccE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA------FGMVVLEILGTKIEDTGVYTCRATNKWGQA 776 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 776 (805)
.+..|+.+.|.|.+. |+|+|.|+|+|||++|..+.+..+... ....+|+|.+++.+|+|.|+|.|.|..|..
T Consensus 14 ~~~~~~~~~l~~~v~--g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 14 FANLHEVKEFVVEVE--AYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred EEecCCcEEEEEEEE--EeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 789999999999999 999999999999999987665433211 123589999999999999999999999999
Q ss_pred EEEEEEEEEE
Q psy2166 777 EISVNLECVV 786 (805)
Q Consensus 777 ~~~~~l~V~~ 786 (805)
+.++.|.|++
T Consensus 92 ~~t~~l~V~v 101 (101)
T cd05859 92 SYTFALQIQV 101 (101)
T ss_pred EEEEEEEEEC
Confidence 9999999864
|
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. |
| >cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.8e-15 Score=120.39 Aligned_cols=82 Identities=27% Similarity=0.438 Sum_probs=72.2
Q ss_pred ecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 696 SEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 696 ~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
..|.+. .+..|+.+.|.|.+. |.|.|.+.|+|+|..+....++.+. .+ .|.|.+++.+|+|.|+|.|.|.+|.
T Consensus 4 ~~p~~~-~~~~G~~~~l~C~~~--g~p~p~v~W~k~g~~~~~~~~~~~~--~~--~L~i~~~~~~D~G~Y~C~a~N~~G~ 76 (85)
T cd05728 4 KVISDT-EADIGSSLRWECKAS--GNPRPAYRWLKNGQPLASENRIEVE--AG--DLRITKLSLSDSGMYQCVAENKHGT 76 (85)
T ss_pred ccCCcc-EEcCCCcEEEEEEee--EeCCCEEEEEECCEECCCCCeEEEe--CC--EEEEeeCCHHHCEEEEEEEECCCCe
Confidence 345566 899999999999999 9999999999999999877776542 33 6999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy2166 776 AEISVNLEC 784 (805)
Q Consensus 776 ~~~~~~l~V 784 (805)
...++.|.|
T Consensus 77 ~~~~~~l~V 85 (85)
T cd05728 77 IYASAELAV 85 (85)
T ss_pred EEEEEEEEC
Confidence 999999876
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.2e-15 Score=115.17 Aligned_cols=73 Identities=22% Similarity=0.282 Sum_probs=63.8
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccC-CCCeEEEee-CcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEA-SHRIRTVHA-FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~-~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
++|.|.+. |.|.|.|.|+|+|+.+.. ..++.+..+ .+..+|.|.+++.+|+|.|+|.|.|.+|+.+.+++|.|
T Consensus 1 v~L~C~v~--G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVS--AIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEe--ecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 57999999 999999999999999874 456665443 45568999999999999999999999999999999976
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). |
| >cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.3e-15 Score=119.98 Aligned_cols=85 Identities=26% Similarity=0.447 Sum_probs=70.3
Q ss_pred cCCcccccCCCCeEEEEEEEeecCCCC-eEEEEEE-CCEEccC-CCCeEEEe-eCcEEEEEEcCCCCCCCEEEEEEEEcC
Q psy2166 697 EFQHLSNLSEGEIAHFEASLIPVGDQT-MTVEFLY-NGKPIEA-SHRIRTVH-AFGMVVLEILGTKIEDTGVYTCRATNK 772 (805)
Q Consensus 697 ~~~~~~~v~~G~~~~l~C~~~~~g~p~-~~v~W~~-~g~~l~~-~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~ 772 (805)
.|.+. .+.+|++++|.|.+. |.|. |.|+|++ ||+.+.. +.++.+.. ++...+|.|.+++.+|+|.|+|.|+|.
T Consensus 6 ~p~~~-~v~~G~~v~l~C~v~--G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~ 82 (96)
T cd05865 6 VPSQG-EISVGESKFFLCQVA--GEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNE 82 (96)
T ss_pred eCCcc-EECCCCeEEEEEEEe--CCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcC
Confidence 34455 789999999999999 9995 7999998 8887765 44555433 334568999999999999999999999
Q ss_pred C-ccEEEEEEEEE
Q psy2166 773 W-GQAEISVNLEC 784 (805)
Q Consensus 773 ~-G~~~~~~~l~V 784 (805)
+ |..+.++.|.|
T Consensus 83 ~~g~~~~s~~l~v 95 (96)
T cd05865 83 DEGESEATVNVKI 95 (96)
T ss_pred CCCcEEEEEEEEE
Confidence 7 89999999887
|
Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans |
| >cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=118.24 Aligned_cols=84 Identities=32% Similarity=0.526 Sum_probs=72.1
Q ss_pred cCCcccccCCCCeEEEEEEEeecCCCCeEEEEEE-CCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 697 EFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY-NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 697 ~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
.+.+. .+.+|+++.|.|.+. |.|. .++|++ +|.++..+.++.+..++....|.|.++..+|+|.|+|.|+|.+|.
T Consensus 6 ~~~~~-~v~~G~~v~l~C~~~--G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 81 (92)
T cd05866 6 SLSKV-ELSVGESKFFTCTAI--GEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ 81 (92)
T ss_pred Eecce-EEcCCCeEEEEEEEE--EeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCc
Confidence 45566 899999999999999 9998 999998 588888888888776666778999999999999999999999997
Q ss_pred E-EEEEEEEE
Q psy2166 776 A-EISVNLEC 784 (805)
Q Consensus 776 ~-~~~~~l~V 784 (805)
. ..++.|.|
T Consensus 82 ~~~~~i~l~~ 91 (92)
T cd05866 82 TQEATVVLEI 91 (92)
T ss_pred EEEEEEEEEE
Confidence 5 66666665
|
Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-14 Score=119.99 Aligned_cols=89 Identities=25% Similarity=0.411 Sum_probs=75.9
Q ss_pred eEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEee-CCEEEEEEccCCCCCCEEEEEEEEcC
Q psy2166 498 FITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD-FGIVILDILYCYEENSGVYECRATNK 576 (805)
Q Consensus 498 ~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~ 576 (805)
+...+++...+.+|++++|.|.+. |.|.|++.|+|+|.++..+.++.+... +....|.|.+++.+|+|.|+|.|.|.
T Consensus 3 ~~~~lp~~v~v~~G~~v~L~C~v~--G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 80 (92)
T cd05737 3 VVGGLPDVVTIMEGKTLNLTCTVF--GDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNK 80 (92)
T ss_pred eeccCCceEEEeCCCcEEEEEEEE--ecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEEC
Confidence 344556655689999999999999 779999999999999988777776544 45668999999999999999999999
Q ss_pred CcceEEEEEEEE
Q psy2166 577 YGSDVTKASLKC 588 (805)
Q Consensus 577 ~g~~~~~~~l~V 588 (805)
.|.....+.|.|
T Consensus 81 ~G~~~~~~~v~v 92 (92)
T cd05737 81 YGGETVDVTVSV 92 (92)
T ss_pred CCcceEEEEEeC
Confidence 999998888765
|
Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. |
| >cd04968 Ig3_Contactin_like Third Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.1e-15 Score=120.09 Aligned_cols=88 Identities=19% Similarity=0.249 Sum_probs=74.4
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 770 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 770 (805)
||.|...+.+. .+.+|+.+.|.|.+. |.|.|.++|+|++..+....... ...+ .|.|.+++.+|+|.|+|.|.
T Consensus 1 p~~~~~~p~~~-~~~~g~~v~l~C~~~--g~P~p~v~W~k~~~~~~~~~~~~--~~~~--~L~i~~v~~~D~G~Y~C~a~ 73 (88)
T cd04968 1 PSIIVVFPKDT-YALKGQNVTLECFAL--GNPVPQIKWRKVDGSMPSSAEIS--MSGA--VLKIPNIQFEDEGTYECEAE 73 (88)
T ss_pred CCcEEECCCce-EEeCCCcEEEEEEee--EeCCCEEEEEECCCcCCCccEEE--EeCC--EEEECCCCcccCEEEEEEEE
Confidence 45666677777 899999999999998 99999999999987765554332 2233 79999999999999999999
Q ss_pred cCCccEEEEEEEEEE
Q psy2166 771 NKWGQAEISVNLECV 785 (805)
Q Consensus 771 N~~G~~~~~~~l~V~ 785 (805)
|.+|....++.|.|.
T Consensus 74 N~~G~~~~~~~l~V~ 88 (88)
T cd04968 74 NIKGKDTHQGRIYVQ 88 (88)
T ss_pred ECCCcEEEEEEEEEC
Confidence 999999999999873
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3) | Back alignment and domain information |
|---|
Probab=99.60 E-value=4e-15 Score=112.12 Aligned_cols=67 Identities=21% Similarity=0.251 Sum_probs=58.1
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
++|.|.+. |+|.|.++|+|||+++.... ....|.|.++..+|+|.|+|.|+|.+|..+.++.|+|.+
T Consensus 1 ~~l~c~v~--g~P~P~v~W~kdg~~l~~~~--------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~v 67 (67)
T cd05863 1 VKLPVKVA--AYPPPEFQWYKDGKLISGKH--------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELIV 67 (67)
T ss_pred CEEEEEEE--EeCCCEEEEEECCEECcccC--------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEEC
Confidence 47999999 99999999999999996321 223799999999999999999999999888888888753
|
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. |
| >cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.4e-15 Score=114.01 Aligned_cols=71 Identities=31% Similarity=0.456 Sum_probs=63.3
Q ss_pred eEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 709 IAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 709 ~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
.+.|.|.+. |.|.|.|+|+|+|..+.++.++.+..++ .|.|.++..+|+|.|+|.|.|.+|+.+.+++|.|
T Consensus 1 ~v~l~C~~~--G~P~p~v~W~k~g~~~~~~~~~~~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVT--GKPTPTVKWVKNGDMVIPSDYFKIVKEH---NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEE--EeCCCEEEEEECCeECCCCCCEEEEecC---CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 478999999 9999999999999999888777765544 4788899999999999999999999999999976
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.6e-15 Score=122.89 Aligned_cols=90 Identities=21% Similarity=0.305 Sum_probs=74.7
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCC-----CCeEEEeeCcEEEEEEcCCCCCCCEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-----HRIRTVHAFGMVVLEILGTKIEDTGVY 765 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~-----~~~~~~~~~~~~~L~i~~v~~~d~G~Y 765 (805)
+|+|. .+.+. .+.+|+.+.|.|.+. |.|.|.|.|++++..+... .++.+........|.|.++..+|+|.|
T Consensus 2 ~P~i~-~~~~~-~~~~g~~v~l~C~~~--g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 77 (96)
T cd05732 2 QPKIT-YLENQ-TAVELEQITLTCEAE--GDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRY 77 (96)
T ss_pred Cccce-ecCce-eEecCCcEEEEEEEe--EcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEe
Confidence 56675 34556 899999999999999 9999999999999776543 244444445567899999999999999
Q ss_pred EEEEEcCCccEEEEEEEEE
Q psy2166 766 TCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 766 ~C~a~N~~G~~~~~~~l~V 784 (805)
+|.|.|.+|.++.++.|.|
T Consensus 78 ~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 78 DCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEEeCCCCcEEEEEEeC
Confidence 9999999999999998875
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole |
| >cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.7e-15 Score=115.88 Aligned_cols=77 Identities=26% Similarity=0.264 Sum_probs=70.0
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
|+++.|.|.+. |.|.|.|+|++++..+....++.+...++...|.|.+++.+|+|.|+|.|.|.+|.....+.+.+.
T Consensus 1 G~~v~l~C~~~--g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~~ 77 (78)
T cd05743 1 GETVEFTCVAT--GVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGILT 77 (78)
T ss_pred CCEEEEEEEEE--EecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEEE
Confidence 78999999999 999999999999999888788877777777899999999999999999999999999888887765
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. |
| >cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-14 Score=114.04 Aligned_cols=75 Identities=29% Similarity=0.461 Sum_probs=63.6
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCe-EEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI-RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
|+++.|.|.+. |.|.|.|+|+|+|.++...... +.....+ .|.|.+++.+|+|.|+|.|.|.+|....++.|.|.
T Consensus 1 G~~v~l~C~~~--G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 76 (76)
T cd05867 1 GETARLDCQVE--GIPTPNITWSINGAPIEGTDPDPRRHVSSG--ALILTDVQPSDTAVYQCEARNRHGNLLANAHVHVV 76 (76)
T ss_pred CCeEEEEEEee--EeCCCeEEEEECCEECCCCCCCceEEeeCC--EEEECCCChhhCEEEEEEEECCCCeEEEEEEEEEC
Confidence 78999999999 9999999999999988764321 2222333 69999999999999999999999999999999883
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-14 Score=117.95 Aligned_cols=91 Identities=20% Similarity=0.310 Sum_probs=79.2
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEE
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRA 573 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 573 (805)
.||+|...+.+.. +.+|+.++|.|.+. |.|.|.+.|+|+|..+..+.++.+......+.|.|.++..+|+|.|+|.|
T Consensus 2 ~~~~~~~~p~~~~-~~~G~~~~L~C~~~--g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 78 (92)
T cd05747 2 LPATILTKPRSLT-VSEGESARFSCDVD--GEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVV 78 (92)
T ss_pred CCCcccccCccEE-EeCCCcEEEEEEEe--ecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEE
Confidence 3677777766654 99999999999999 77889999999999998877887766666678999999999999999999
Q ss_pred EcCCcceEEEEEEE
Q psy2166 574 TNKYGSDVTKASLK 587 (805)
Q Consensus 574 ~n~~g~~~~~~~l~ 587 (805)
.|..|.....+.|+
T Consensus 79 ~N~~G~~~~~~~l~ 92 (92)
T cd05747 79 ENSEGKQEAQFTLT 92 (92)
T ss_pred EcCCCCEeEEEEeC
Confidence 99999998887763
|
Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. |
| >cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C) | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-14 Score=114.87 Aligned_cols=81 Identities=21% Similarity=0.277 Sum_probs=71.5
Q ss_pred ccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCC-CceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEE
Q psy2166 506 TQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG-HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584 (805)
Q Consensus 506 ~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 584 (805)
..+.+|+.+.|.|.+. |.|.|.++|+|+|+++... .++.+......+.|.|.++..+|+|.|+|.|.|..|....++
T Consensus 5 ~~v~~G~~v~l~c~~~--G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~ 82 (86)
T cd05894 5 IVVVAGNKLRLDVPIS--GEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASL 82 (86)
T ss_pred EEEEcCCEEEEEeeEe--ecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEE
Confidence 3488999999999999 7899999999999999753 467766666677899999999999999999999999999888
Q ss_pred EEEE
Q psy2166 585 SLKC 588 (805)
Q Consensus 585 ~l~V 588 (805)
.|.|
T Consensus 83 ~l~V 86 (86)
T cd05894 83 FVKV 86 (86)
T ss_pred EEEC
Confidence 8865
|
Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. |
| >cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-14 Score=116.46 Aligned_cols=88 Identities=20% Similarity=0.301 Sum_probs=75.0
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEE
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAW 144 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 144 (805)
+|.|...+. +..+.+|+.++|.|.+. |.|.|.|+|+|++..+....++.+ .+. .|.|.+++.+|+|.|+|.|.
T Consensus 1 ~p~i~~~~~-~~~~~~G~~v~l~C~~~--G~P~P~v~W~k~~~~~~~~~~~~~--~~~--~L~I~~v~~~D~G~Y~C~A~ 73 (88)
T cd05851 1 PADINVKFK-DTYALKGQNVTLECFAL--GNPVPVIRWRKILEPMPATAEISM--SGA--VLKIFNIQPEDEGTYECEAE 73 (88)
T ss_pred CCceEEccc-cEEEeCCCcEEEEEEec--ccCCCEEEEEECCcCCCCCCEEec--CCC--EEEECcCChhhCEEEEEEEE
Confidence 477777776 67899999999999999 799999999999988876554433 222 79999999999999999999
Q ss_pred eCCeeEEEEEEEEEe
Q psy2166 145 NLAGETFTSTTIYCS 159 (805)
Q Consensus 145 n~~g~~~~~~~l~V~ 159 (805)
|..|.....+.|.|+
T Consensus 74 N~~G~~~~~~~l~V~ 88 (88)
T cd05851 74 NIKGKDKHQARVYVQ 88 (88)
T ss_pred cCCCceEEEEEEEEC
Confidence 999999998888873
|
Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-14 Score=118.00 Aligned_cols=84 Identities=15% Similarity=0.211 Sum_probs=71.0
Q ss_pred cccccCCCeEEEEEEEeeCC-CCCcEEEEEECCEEccCCCceEEEeeC-----CEEEEEEccCCCCCCEEEEEEEEcCCc
Q psy2166 505 VTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTFHDF-----GIVILDILYCYEENSGVYECRATNKYG 578 (805)
Q Consensus 505 ~~~v~~G~~v~L~C~v~~~g-~p~~~v~W~~~g~~l~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g 578 (805)
...+.+|++++|.|.+. | .|+|.+.|+|||.+|.......+...+ ....|.|.++..+|+|.|+|.|.|..|
T Consensus 12 ~~~v~~G~~v~L~c~v~--g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G 89 (101)
T cd04975 12 TIFVNLGENLNLVVEVE--AYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA 89 (101)
T ss_pred eEEEECCCCEEEEEEEE--ecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence 34588999999999999 6 899999999999999866554443332 246799999999999999999999999
Q ss_pred ceEEEEEEEEee
Q psy2166 579 SDVTKASLKCVS 590 (805)
Q Consensus 579 ~~~~~~~l~V~~ 590 (805)
..+.++.|.|.+
T Consensus 90 ~~~~t~~L~V~v 101 (101)
T cd04975 90 SKSLTFELYVNV 101 (101)
T ss_pred cEEEEEEEEEEC
Confidence 999999998863
|
Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes |
| >cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-14 Score=113.34 Aligned_cols=75 Identities=20% Similarity=0.303 Sum_probs=63.5
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEccCCCC-eEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR-IRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
|+.+.|.|.+. |+|.|.|+|+|+|+++..... .....+++ .|.|.+++.+|+|.|+|.|+|.+|....+++|.|.
T Consensus 1 g~~~~l~C~a~--G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRAN--GNPKPSISWLTNGVPIEIAPTDPSRKVDGD--TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred CCCEEEEEEee--EeCCCeEEEEECCEEccccCCCceEEecCC--EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 78899999999 999999999999999864422 11223333 68999999999999999999999999999999983
|
Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.3e-14 Score=117.28 Aligned_cols=90 Identities=33% Similarity=0.584 Sum_probs=81.8
Q ss_pred CceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEc
Q psy2166 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATN 575 (805)
Q Consensus 496 P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 575 (805)
|+|...+.+.. +.+|++++|.|.+. +.|.+.+.|+++|..+..+.++.+...+..+.|.|.++..+|+|.|+|.|.|
T Consensus 1 P~~~~~~~~~~-v~~G~~~~l~c~~~--~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n 77 (90)
T PF07679_consen 1 PVFTKKPKDVT-VKEGESVTLECEVS--GNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASN 77 (90)
T ss_dssp EEEEEESSEEE-EETTSEEEEEEEEE--ESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEE
T ss_pred CEEEEecCCEE-EeCCCEEEEEEEEE--eCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEE
Confidence 56777775554 99999999999999 5688999999999999999999998888999999999999999999999999
Q ss_pred CCcceEEEEEEEE
Q psy2166 576 KYGSDVTKASLKC 588 (805)
Q Consensus 576 ~~g~~~~~~~l~V 588 (805)
..|..+..+.|.|
T Consensus 78 ~~g~~~~~~~l~V 90 (90)
T PF07679_consen 78 SSGEATASVNLTV 90 (90)
T ss_dssp TTEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEC
Confidence 9999999999876
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A .... |
| >cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-14 Score=120.27 Aligned_cols=91 Identities=27% Similarity=0.475 Sum_probs=72.4
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCC-----CCeEEEeeCcEEEEEEc--CCCCCCCE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-----HRIRTVHAFGMVVLEIL--GTKIEDTG 763 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~-----~~~~~~~~~~~~~L~i~--~v~~~d~G 763 (805)
||.|...+.+. .+.+|+.+.|.|.+. |.|.|.|+|+|+|..+... .+..+..++....|.|. .++.+|+|
T Consensus 1 ~P~i~~~p~~~-~v~~G~~~~l~C~~~--g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G 77 (100)
T cd07693 1 PPRIVEHPSDL-IVSKGDPATLNCKAE--GRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEG 77 (100)
T ss_pred CCeEEecCcee-EEcCCCeEEEEeeCC--cCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCE
Confidence 58888888888 999999999999998 9999999999999988762 22222333333344443 34789999
Q ss_pred EEEEEEEcCCcc-EEEEEEEEE
Q psy2166 764 VYTCRATNKWGQ-AEISVNLEC 784 (805)
Q Consensus 764 ~Y~C~a~N~~G~-~~~~~~l~V 784 (805)
.|+|.|.|.+|. .+..+.|.|
T Consensus 78 ~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 78 VYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEEEccccceecceEEEEe
Confidence 999999999998 778888877
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res |
| >cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.1e-14 Score=116.76 Aligned_cols=80 Identities=24% Similarity=0.386 Sum_probs=71.0
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEee-CcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA-FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
.+.+|+.+.|.|.+. |.|.|.+.|+|+|..+..+.++.+... +....|.|.+++.+|+|.|+|.|.|.+|.++.++.
T Consensus 12 ~v~eG~~v~L~C~v~--g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (92)
T cd05891 12 TIMEGKTLNLTCTVF--GNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVT 89 (92)
T ss_pred EEcCCCEEEEEEEEE--EeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEE
Confidence 899999999999998 999999999999999988877765433 33458999999999999999999999999999888
Q ss_pred EEE
Q psy2166 782 LEC 784 (805)
Q Consensus 782 l~V 784 (805)
|.|
T Consensus 90 v~~ 92 (92)
T cd05891 90 VSV 92 (92)
T ss_pred EEC
Confidence 875
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. |
| >cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.6e-14 Score=115.35 Aligned_cols=80 Identities=25% Similarity=0.379 Sum_probs=68.4
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeE-EEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
.+.+|+.+.|.|.+. |.|.|.|+|+|+|..+..+.+.. .........|.|.++..+|+|.|+|.|.|.+|....+++
T Consensus 5 ~v~~G~~~~L~C~~~--g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05857 5 AVPAANTVKFRCPAA--GNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 82 (85)
T ss_pred EcCCCCEEEEEEEcC--CCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEE
Confidence 688999999999998 99999999999999998765532 112223457999999999999999999999999999999
Q ss_pred EEE
Q psy2166 782 LEC 784 (805)
Q Consensus 782 l~V 784 (805)
|.|
T Consensus 83 l~v 85 (85)
T cd05857 83 LDV 85 (85)
T ss_pred EEC
Confidence 876
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. |
| >cd04969 Ig5_Contactin_like Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-14 Score=112.51 Aligned_cols=73 Identities=29% Similarity=0.345 Sum_probs=65.9
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
|+.+.|.|.+. |.|.|.++|+|++..+....++.+..+ + .|.|.+++.+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 G~~v~L~C~~~--g~P~p~v~W~k~~~~~~~~~~~~~~~~-~--~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPK--AAPKPTISWSKGTELLTNSSRICIWPD-G--SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeee--EcCCCEEEEEECCEEcccCCCEEECCC-C--eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 78999999998 999999999999999988878765433 3 6999999999999999999999999999999876
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-14 Score=110.67 Aligned_cols=73 Identities=23% Similarity=0.342 Sum_probs=63.3
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccC-CCceEEEee-CCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPH-GHRYRTFHD-FGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~-~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
|.|.|.+. |.|.|.++|+|||+.|.. +.++.+..+ ++...|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~v~--G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQIS--AIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEE--ecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 57999999 789999999999999974 457766544 44568999999999999999999999999999999875
|
Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders. |
| >cd05848 Ig1_Contactin-5 First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.9e-14 Score=115.98 Aligned_cols=82 Identities=26% Similarity=0.348 Sum_probs=65.8
Q ss_pred CeeeecCCcccccC---CCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCC-CCCCEEEEE
Q psy2166 692 PQFTSEFQHLSNLS---EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTK-IEDTGVYTC 767 (805)
Q Consensus 692 P~~~~~~~~~~~v~---~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C 767 (805)
|.|...|.++ .+. +|+.+.|.|.+. |.|.|.|+|+|||..+......++....+ .|.|.++. .+|+|.|+|
T Consensus 2 P~f~~~p~~~-~~~~~~~g~~v~l~C~~~--G~P~P~i~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C 76 (94)
T cd05848 2 PVFVQEPDDA-IFPTDSDEKKVILNCEAR--GNPVPTYRWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQC 76 (94)
T ss_pred CeeEECCCcE-EccCCCCCCEEEEEEEee--ecCCCEEEEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEE
Confidence 6777777776 443 578999999999 99999999999999997654444333344 68898885 699999999
Q ss_pred EEEcCCccEEE
Q psy2166 768 RATNKWGQAEI 778 (805)
Q Consensus 768 ~a~N~~G~~~~ 778 (805)
.|.|.+|...+
T Consensus 77 ~A~N~~G~~~S 87 (94)
T cd05848 77 LATNSIGSILS 87 (94)
T ss_pred EEEcCCCeEEe
Confidence 99999997754
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. |
| >cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4 | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-14 Score=113.35 Aligned_cols=81 Identities=14% Similarity=0.151 Sum_probs=64.6
Q ss_pred CeEEEEEEEeecCCCCeEEEEEECCEEccC---CCCeEEEee-CcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEE
Q psy2166 708 EIAHFEASLIPVGDQTMTVEFLYNGKPIEA---SHRIRTVHA-FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783 (805)
Q Consensus 708 ~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~---~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 783 (805)
+++.|.|.+..++.+++.|.|+|||++|.. +.++..... .....|+|.+++..|+|.|+|.|+|.+++.+.+++|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 468999999844567899999999999963 234433211 1123799999999999999999999999999999999
Q ss_pred EEEeC
Q psy2166 784 CVVWS 788 (805)
Q Consensus 784 V~~~~ 788 (805)
|+++|
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 98754
|
Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. |
| >cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.2e-14 Score=113.21 Aligned_cols=78 Identities=23% Similarity=0.235 Sum_probs=63.5
Q ss_pred CeEEEEEEEeecCCCCe--EEEEEECCEEccCC---CCeEE-EeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 708 EIAHFEASLIPVGDQTM--TVEFLYNGKPIEAS---HRIRT-VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 708 ~~~~l~C~~~~~g~p~~--~v~W~~~g~~l~~~---~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
+.++|.|.+. |+|.| .|+|+|||+++... .++.. ........|.|.+++.+|+|.|+|.|.|.+|+.+.++.
T Consensus 1 ~~~~L~C~a~--g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~ 78 (85)
T cd05854 1 ENLTLQCHAS--HDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASAT 78 (85)
T ss_pred CcEEEEEEEe--cCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEE
Confidence 4689999999 88887 68999999988643 23322 22223358999999999999999999999999999999
Q ss_pred EEEEEe
Q psy2166 782 LECVVW 787 (805)
Q Consensus 782 l~V~~~ 787 (805)
|.|..+
T Consensus 79 L~V~~~ 84 (85)
T cd05854 79 LVVRGP 84 (85)
T ss_pred EEEECC
Confidence 999763
|
Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.8e-14 Score=111.15 Aligned_cols=71 Identities=21% Similarity=0.264 Sum_probs=59.6
Q ss_pred EEEEEEeecCCCCeEEEEEECCEEccCCCCeEE--Ee---eCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEE
Q psy2166 711 HFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT--VH---AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783 (805)
Q Consensus 711 ~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~--~~---~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 783 (805)
.|.|.+. |+|.|.|+|+|||++|..+.++.. .. ......|+|.++..+|+|.|+|+|+|.+|+++.++.+.
T Consensus 2 ~i~~~v~--G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVK--GNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEe--EeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 4789998 999999999999999987766432 11 12346899999999999999999999999999888765
|
TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. |
| >cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.1e-14 Score=114.22 Aligned_cols=86 Identities=17% Similarity=0.251 Sum_probs=69.5
Q ss_pred Ceeee--cCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 692 PQFTS--EFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 692 P~~~~--~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
|.|.. .+.++ .+.+|++++|.|.+. |. .|.|.|+|+|..+... ++.+..+++ .|.|.+++++|+|.|+|.|
T Consensus 2 p~~~~~~~~~~~-~v~~g~~v~l~C~a~--g~-~p~i~W~kng~~l~~~-~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a 74 (91)
T cd05740 2 PVINSNNSVGNQ-PPEDNQPVTLTCEAE--GQ-ATYIWWVNNGSLLVPP-RLQLSNDNR--TLTFNNVTRSDTGHYQCEA 74 (91)
T ss_pred CEeecccccCcc-ccccCCcEEEEEEeC--CC-CCEEEEEECCEECCCC-CEEEeCCCC--EEEECcCChhhCEEEEEEE
Confidence 55543 34466 899999999999999 88 9999999999988654 455444444 7999999999999999999
Q ss_pred EcCCccE-EEEEEEEE
Q psy2166 770 TNKWGQA-EISVNLEC 784 (805)
Q Consensus 770 ~N~~G~~-~~~~~l~V 784 (805)
.|.+|.. +..+.|.|
T Consensus 75 ~N~~G~~~S~~~~L~V 90 (91)
T cd05740 75 SNEVSNMTSDPYILNV 90 (91)
T ss_pred EcCCCCEEeeeEEEEe
Confidence 9999964 45777776
|
Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the |
| >cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.2e-14 Score=109.74 Aligned_cols=70 Identities=26% Similarity=0.279 Sum_probs=59.9
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
+.|.|.+. |.|.|.++|+|||+++..+.++ ..+ ..|.|.++..+|+|.|+|.|.|.+|..+...+++|++
T Consensus 1 ~~~~c~v~--G~P~P~v~W~k~g~~l~~~~~~---~~~--~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~v 70 (70)
T cd05864 1 VKIPVKYY--GYPPPEVKWYKNGQLIVLNHTF---KRG--VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLVV 70 (70)
T ss_pred CEEEeEEE--EeCCCEEEEEECCEECCCCCEE---ccC--CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEEC
Confidence 47999999 9999999999999999765432 222 2699999999999999999999999888888888764
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.8e-14 Score=110.72 Aligned_cols=73 Identities=23% Similarity=0.353 Sum_probs=65.4
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
|+++.|.|.+. |.|.|+|+|+|+++.+..+.++.+..++ .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~~~l~C~~~--g~P~p~v~W~k~~~~l~~~~r~~~~~~g---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPK--AAPKPKFSWSKGTELLVNNSRISIWDDG---SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecc--eeCCCEEEEEeCCEecccCCCEEEcCCC---EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 78999999999 7788999999999998877788765543 4999999999999999999999999999998875
|
Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.6e-14 Score=111.32 Aligned_cols=71 Identities=24% Similarity=0.259 Sum_probs=60.0
Q ss_pred EEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEee-------CcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEE
Q psy2166 711 HFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA-------FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783 (805)
Q Consensus 711 ~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 783 (805)
.|.|.+. |+|.|.|+|+|||+++..+.++.+... .....|+|.++..+|+|.|+|.|+|.+|.+..++.|.
T Consensus 2 ~i~~~v~--G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVR--GNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeE--eeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 4789999 999999999999999988775443211 2345799999999999999999999999999988775
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun |
| >cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.8e-14 Score=112.39 Aligned_cols=75 Identities=27% Similarity=0.307 Sum_probs=64.3
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCe-EEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI-RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
|+.+.|.|.+. |.|.|.|.|+++|..+...... ...... ..|.|.+++.+|+|.|+|.|.|.+|....++.|.|.
T Consensus 1 G~~~~l~C~~~--g~P~p~i~W~~~g~~~~~~~~~~~~~~~~--~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 76 (76)
T cd04978 1 GETGRLDCEAE--GIPQPTITWRLNGVPIEELPPDPRRRVDG--GTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV 76 (76)
T ss_pred CCeEEEEEEce--eeCCCEEEEEECCEECCCCCCcceEEccC--CEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence 78999999998 9999999999999988765433 222223 379999999999999999999999999999999883
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05850 Ig1_Contactin-2 First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=113.62 Aligned_cols=86 Identities=27% Similarity=0.361 Sum_probs=65.9
Q ss_pred CeeeecCCcccccCCC---CeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCC-CCCCEEEEE
Q psy2166 692 PQFTSEFQHLSNLSEG---EIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTK-IEDTGVYTC 767 (805)
Q Consensus 692 P~~~~~~~~~~~v~~G---~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C 767 (805)
|.|...|.+. .+.+| +.++|.|.+. |+|.|.|+|++||..+............+ .|.|.++. .+|+|.|+|
T Consensus 2 P~f~~~P~~~-~~~~~~~g~~v~l~C~a~--g~P~p~i~W~~~g~~l~~~~~~~~~~~~g--~L~I~~~~~~~D~G~Y~C 76 (94)
T cd05850 2 PVFEEQPSSL-LFPEGSPEEKVTLGCRAR--ASPPATYRWKMNGTEIKFAPESRYTLVAG--NLVINNPQKARDAGSYQC 76 (94)
T ss_pred CeeEECCCCE-EecCCCCCCeEEEEeEce--eCCCCEEEEEECCEECccCCCceEEEECC--eEEEccCCccCcCEEEEE
Confidence 6677777777 55555 6899999999 99999999999999987543322223334 68898765 699999999
Q ss_pred EEEcCCccEEE-EEEE
Q psy2166 768 RATNKWGQAEI-SVNL 782 (805)
Q Consensus 768 ~a~N~~G~~~~-~~~l 782 (805)
.|+|.+|...+ .+.|
T Consensus 77 ~A~N~~G~~~s~~a~l 92 (94)
T cd05850 77 LAINRCGTVVSREANL 92 (94)
T ss_pred EEEcCcCcEEEEEEEE
Confidence 99999997765 4444
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-14 Score=111.28 Aligned_cols=74 Identities=31% Similarity=0.430 Sum_probs=64.8
Q ss_pred CCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 510 ~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
+|+++.|.|.+. |.|.|.|+|+|+|..+..+.++.+..++ .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 eG~~v~l~C~~~--g~P~p~i~W~k~g~~~~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQ--GYPQPVIAWTKGGSQLSVDRRHLVLSSG---TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECC--EecCCEEEEEECCEECCCCCCeEEccCC---eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 689999999999 7799999999999999876666544332 5999999999999999999999999999988875
|
Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-14 Score=109.74 Aligned_cols=71 Identities=25% Similarity=0.296 Sum_probs=61.0
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
+.|.|.+. |.|.|.++|+|||+++..+.++. ..+ ..|.|.++..+|+|.|+|.|.|.+|..+.++.++|.+
T Consensus 1 ~~l~c~v~--g~P~p~v~W~k~g~~l~~~~~~~--~~~--~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~v 71 (71)
T cd04976 1 VRLPVKVK--AYPPPEIQWYKNGKLISEKNRTK--KSG--HSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLVV 71 (71)
T ss_pred CEEEeEEE--EeCCCEEEEEECCEECCCCCEEE--cCC--CEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEEC
Confidence 47999999 99999999999999998775432 222 3799999999999999999999999998888888753
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa |
| >cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.5e-14 Score=108.85 Aligned_cols=73 Identities=26% Similarity=0.355 Sum_probs=62.7
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccC-CCceEEEeeC-CEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPH-GHRYRTFHDF-GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~-~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
|+|.|.+. |.|.|.++|+|+|.++.. ..++.+..++ +...|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~v~--G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVS--GVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEe--EecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 57999999 789999999999999975 3566665443 4557999999999999999999999999999999875
|
Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions. |
| >cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.6e-14 Score=109.50 Aligned_cols=69 Identities=28% Similarity=0.421 Sum_probs=61.0
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 783 (805)
+.|.|.+. |.|.|.|+|+|+|..+..+.++.+..+ + .|.|.++..+|+|.|+|.|.|.+|..+.++.|+
T Consensus 1 v~L~C~~~--g~P~p~i~W~k~g~~~~~~~~~~~~~~-~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~Lt 69 (69)
T cd05746 1 VQIPCSAQ--GDPEPTITWNKDGVQVTESGKFHISPE-G--YLAIRDVGVADQGRYECVARNTIGYASVSMVLS 69 (69)
T ss_pred CEeEecce--EeCCCEEEEEECCEECCCCCCEEECCC-C--EEEECcCChhhCEEEEEEEECCCCcEEEEEEeC
Confidence 57999999 999999999999999988777765433 3 799999999999999999999999999988874
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.1e-14 Score=110.06 Aligned_cols=72 Identities=19% Similarity=0.347 Sum_probs=58.5
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCC-CeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASH-RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
++|.|.+. |.|.|.|+|+|+|.++..+. ++.+.... ..|.|.++..+|+|.|+|.|.|.+|....+..++|.
T Consensus 1 v~L~C~~~--g~P~p~v~W~k~g~~l~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~ 73 (77)
T cd05760 1 VTLRCHID--GHPRPTYQWFRDGTPLSDGQGNYSVSSKE--RTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLS 73 (77)
T ss_pred CEEEEEee--ecCCCcEEEEECCEECCCCCccEEEeCCC--CEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEE
Confidence 57999999 99999999999999987664 33333333 379999999999999999999999988665555554
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s |
| >cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-13 Score=117.31 Aligned_cols=97 Identities=19% Similarity=0.276 Sum_probs=73.0
Q ss_pred CCCeeeecCCccccc---CCCCeEEEEEEEeecCCCCeEEEEEECCEEccCC-CCeEEE--eeC--cEEEEEEcCCC-CC
Q psy2166 690 RPPQFTSEFQHLSNL---SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTV--HAF--GMVVLEILGTK-IE 760 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v---~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~-~~~~~~--~~~--~~~~L~i~~v~-~~ 760 (805)
.+|.|...+.....+ ..|..++|.|.+. |.|.|.+.|+|||..+... .++... ..+ ...+|+|.+++ .+
T Consensus 3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~--G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~ 80 (109)
T cd05773 3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQ--GVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAAL 80 (109)
T ss_pred cccccccCCceEEEEEecCCCCEEEEEEECc--ccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccC
Confidence 355565554432122 2568999999999 9999999999999998754 344322 111 13579999997 58
Q ss_pred CCEEEEEEEEcCCccEEEEEEEEEEEeC
Q psy2166 761 DTGVYTCRATNKWGQAEISVNLECVVWS 788 (805)
Q Consensus 761 d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 788 (805)
|.|.|+|.|.|.+|.+..++.|.|+..|
T Consensus 81 D~G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 81 DYALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred CCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence 9999999999999999999999997543
|
Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p |
| >cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.6e-14 Score=106.43 Aligned_cols=69 Identities=20% Similarity=0.389 Sum_probs=58.7
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 783 (805)
|+.+.|.|.+. |.|.|.|+|+|+|.++....++.. +...|+|.++. |+|.|+|.|.|.+|....+++|+
T Consensus 1 G~~v~L~C~a~--G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l~ 69 (69)
T cd05739 1 GGSVNLTCVAV--GAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNIY--ESANYTCVAISSLGMIEATAQVT 69 (69)
T ss_pred CCeEEEEEEee--ecCCCEEEEEECCEECCCccceec----CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEEC
Confidence 78899999999 999999999999999876655432 23379999974 89999999999999999988874
|
Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). |
| >cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-13 Score=113.96 Aligned_cols=88 Identities=19% Similarity=0.260 Sum_probs=72.1
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCe-EEEEEECCEEccCC--CCeEEEee----CcEEEEEEcCCCC-CCC
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEAS--HRIRTVHA----FGMVVLEILGTKI-EDT 762 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~-~v~W~~~g~~l~~~--~~~~~~~~----~~~~~L~i~~v~~-~d~ 762 (805)
||.|.. +.+. .+.+|+++.|.|.+. |.|.| .|.|++++..+... .++.+... +...+|.|.++.. +|.
T Consensus 2 pp~i~~-~~~~-~~~~G~~v~L~C~~~--g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~ 77 (98)
T cd05758 2 PPIITS-EATQ-YAILGDKGRVECFIF--STPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQ 77 (98)
T ss_pred CCeEcC-CCcE-EEeCCCcEEEEEEEc--ccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccc
Confidence 567754 4455 789999999999999 99999 69999999988764 46665443 2235899999998 569
Q ss_pred EEEEEEEEcCCccEEEEEEE
Q psy2166 763 GVYTCRATNKWGQAEISVNL 782 (805)
Q Consensus 763 G~Y~C~a~N~~G~~~~~~~l 782 (805)
|.|+|.|.|..|.++..++|
T Consensus 78 G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 78 TSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred eeEEEEEEcCCCcccEEEEe
Confidence 99999999999999998876
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.9e-14 Score=110.46 Aligned_cols=75 Identities=16% Similarity=0.346 Sum_probs=65.9
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 782 (805)
.+.+|+.+.|.|.+. |. .+.|.|+|||.+|..+.++.+. ++ .|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus 5 ~~~~G~~v~l~C~~~--~~-~~~v~W~k~g~~l~~~~~~~~~--~~--~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v 77 (79)
T cd04973 5 SAHPGDLLQLRCRLR--DD-VQSINWTKDGVQLGENNRTRIT--GE--EVQIKDAVPRDSGLYACVTSSPSGSDTTYFSV 77 (79)
T ss_pred EecCCCCEEEEEEec--CC-CceEEEeeCCcCCCCCceEEEe--CC--EEEECCCChhhCEEEEEEEeCCCCcccEEEEE
Confidence 789999999999998 75 5689999999999887777653 33 79999999999999999999999999888887
Q ss_pred EE
Q psy2166 783 EC 784 (805)
Q Consensus 783 ~V 784 (805)
+|
T Consensus 78 ~V 79 (79)
T cd04973 78 NV 79 (79)
T ss_pred eC
Confidence 65
|
Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. |
| >cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-13 Score=107.55 Aligned_cols=74 Identities=23% Similarity=0.283 Sum_probs=66.8
Q ss_pred eEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 513 SAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 513 ~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
.+.|.|.+. |.|.|.++|+|+|..+..+.++.+...+....|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~~l~c~~~--G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPIS--GRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEe--eeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 478999999 78999999999999998777887777677788999999999999999999999999999888875
|
Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN- |
| >cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-13 Score=111.56 Aligned_cols=80 Identities=19% Similarity=0.215 Sum_probs=68.9
Q ss_pred cccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEE
Q psy2166 507 QLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 586 (805)
.+.+|+.+.|.|.+. |.|.|.++|+++|..+................|.|.++..+|.|.|+|.|.|..|.....+.|
T Consensus 11 ~v~~G~~v~l~C~~~--G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L 88 (90)
T cd04972 11 VVYEGGTATIRCTAE--GSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQV 88 (90)
T ss_pred EEcCCCcEEEEEEEE--EcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEE
Confidence 388999999999999 789999999999999876555443444456689999999999999999999999999999888
Q ss_pred EE
Q psy2166 587 KC 588 (805)
Q Consensus 587 ~V 588 (805)
.|
T Consensus 89 ~v 90 (90)
T cd04972 89 TV 90 (90)
T ss_pred eC
Confidence 65
|
TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo |
| >cd05849 Ig1_Contactin-1 First Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-13 Score=111.73 Aligned_cols=85 Identities=19% Similarity=0.238 Sum_probs=65.6
Q ss_pred CCeeeecCCcccccCC---CCeEEEEEEEeecCCCCeEEEEEECCEEccCC-CCeEEEeeCcEEEEEEcCCC-CCCCEEE
Q psy2166 691 PPQFTSEFQHLSNLSE---GEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTVHAFGMVVLEILGTK-IEDTGVY 765 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~---G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~-~~d~G~Y 765 (805)
+|.|...|.++ .+.+ |+.+.|.|.+. |+|.|.|+|+|++..+... .++.+ .++ .|.|.++. .+|+|.|
T Consensus 1 ~P~f~~~P~~~-~~~~~~~~~~v~l~C~a~--G~P~P~i~W~k~~~~i~~~~~~~~~--~~g--~L~I~~~~~~~D~G~Y 73 (93)
T cd05849 1 GPVFEEQPIDT-IYPEESTEGKVSVNCRAR--ANPFPIYKWRKNNLDIDLTNDRYSM--VGG--NLVINNPDKYKDAGRY 73 (93)
T ss_pred CCEEEECCCCE-EecCCccCCeEEEeCcCc--cCCCCEEEEEECCEEccCCCCeEEE--ECC--EEEECcCCcCCCCEEE
Confidence 36777777776 5544 44899999999 9999999999999988643 44432 334 69999985 6899999
Q ss_pred EEEEEcCCccEEE-EEEE
Q psy2166 766 TCRATNKWGQAEI-SVNL 782 (805)
Q Consensus 766 ~C~a~N~~G~~~~-~~~l 782 (805)
+|.|+|.+|...+ .+.|
T Consensus 74 ~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 74 VCIVSNIYGKVRSREATL 91 (93)
T ss_pred EEEEEeCcceEEEccEEE
Confidence 9999999997654 4444
|
Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.8e-14 Score=107.70 Aligned_cols=70 Identities=20% Similarity=0.238 Sum_probs=59.3
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
+.|.|.+. |.|.|.|.|+|++..+..+. .......+ .|+|.++..+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 ~~L~C~~~--G~P~P~v~W~k~~~~~~~~~-~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAE--GLPTPEVHWDRIDGPLSPNR-TKKLNNNK--TLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEee--EecCCeEEEEECCcCCCCCc-eeEEcCCC--EEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 47999999 99999999999998876543 22233333 7999999999999999999999999999999887
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.8e-13 Score=112.74 Aligned_cols=91 Identities=16% Similarity=0.277 Sum_probs=72.7
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCC-----CceEEEeeCCEEEEEEccCCCCCCEEE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG-----HRYRTFHDFGIVILDILYCYEENSGVY 569 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~-----~~~~~~~~~~~~~L~i~~v~~~d~G~Y 569 (805)
.|+|........ +..|+.++|.|.+. |.|.|.++|+++++.+... .++.+........|.|.+++.+|+|.|
T Consensus 2 ~p~i~~~~~~~~-~~~g~~v~l~C~~~--G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y 78 (97)
T cd05869 2 KPKITYVENQTA-MELEEQITLTCEAS--GDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEY 78 (97)
T ss_pred CceEEEccCceE-EEcCCCEEEEEEee--EeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEE
Confidence 467766544433 56689999999999 7788999999999887532 234444445557899999999999999
Q ss_pred EEEEEcCCcceEEEEEEEE
Q psy2166 570 ECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 570 ~C~a~n~~g~~~~~~~l~V 588 (805)
+|.|.|..|....++.|.|
T Consensus 79 ~C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 79 LCTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEEecCCCCeeEEEEEEC
Confidence 9999999999999988875
|
Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr |
| >cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.5e-13 Score=105.39 Aligned_cols=71 Identities=25% Similarity=0.472 Sum_probs=62.0
Q ss_pred eEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 513 SAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 513 ~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
+++|.|.+. |.|.|.++|+|+|..+..+.++.+..++. |.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~v~l~C~~~--G~P~p~v~W~k~g~~~~~~~~~~~~~~~~---l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVT--GKPTPTVKWVKNGDMVIPSDYFKIVKEHN---LQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEE--EeCCCEEEEEECCeECCCCCCEEEEecCC---EEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 478999999 78999999999999998777776655544 778899999999999999999999999998875
|
Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-13 Score=108.94 Aligned_cols=72 Identities=29% Similarity=0.439 Sum_probs=59.0
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccC---CCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEA---SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~---~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
++|.|.+. |.|.|.|+|+|+|....+ ..++.+...++ .|.|.++..+|+|.|+|.|.|.+|....+++|.|+
T Consensus 1 a~l~C~~~--G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 75 (75)
T cd05763 1 ARLECAAT--GHPTPQIAWQKDGGTDFPAARERRMHVMPEDD--VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTVL 75 (75)
T ss_pred CEeEeecc--cccCCEEEEEeCCCccCCcccccceEEecCCC--EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEEC
Confidence 47999998 999999999999864322 23444433334 79999999999999999999999999999999883
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-13 Score=105.76 Aligned_cols=73 Identities=26% Similarity=0.368 Sum_probs=62.6
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccC-CCceEEEee-CCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPH-GHRYRTFHD-FGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~-~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
++|.|.+. |.|.|.++|+|||..+.. ..++.+..+ .+...|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~L~C~v~--G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVS--AIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEe--ecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 57999999 789999999999999974 456665543 35567999999999999999999999999999998875
|
Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). |
| >cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.4e-13 Score=110.09 Aligned_cols=80 Identities=25% Similarity=0.471 Sum_probs=66.2
Q ss_pred cccCCCeEEEEEEEeeCCCC-CcEEEEEE-CCEEccC-CCceEEEe-eCCEEEEEEccCCCCCCEEEEEEEEcCC-cceE
Q psy2166 507 QLKEGQSAHFEARLTPVTDP-DLVVEWFY-NGKKLPH-GHRYRTFH-DFGIVILDILYCYEENSGVYECRATNKY-GSDV 581 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~p-~~~v~W~~-~g~~l~~-~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~-g~~~ 581 (805)
.+.+|++++|.|.+. |.| +|.++|++ +|+.+.. +.++.+.. ++..+.|.|.+++.+|+|.|+|.|+|.. |...
T Consensus 11 ~v~~G~~v~l~C~v~--G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~ 88 (96)
T cd05865 11 EISVGESKFFLCQVA--GEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESE 88 (96)
T ss_pred EECCCCeEEEEEEEe--CCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEE
Confidence 388999999999999 677 47999998 8887755 44555433 3345789999999999999999999997 8889
Q ss_pred EEEEEEE
Q psy2166 582 TKASLKC 588 (805)
Q Consensus 582 ~~~~l~V 588 (805)
.++.|.|
T Consensus 89 ~s~~l~v 95 (96)
T cd05865 89 ATVNVKI 95 (96)
T ss_pred EEEEEEE
Confidence 8888876
|
Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans |
| >cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-13 Score=112.63 Aligned_cols=82 Identities=17% Similarity=0.211 Sum_probs=68.9
Q ss_pred ccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEee------CCEEEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 506 TQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD------FGIVILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 506 ~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
..+..|+.++|.|.+. |.|.|.+.|+|||++|..+.+...... ...+.|.|.++..+|+|.|+|.|.|..|.
T Consensus 13 ~~~~~~~~~~l~~~v~--g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 13 EFANLHEVKEFVVEVE--AYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV 90 (101)
T ss_pred EEEecCCcEEEEEEEE--EeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence 3478899999999999 678889999999999986654433221 12457999999999999999999999999
Q ss_pred eEEEEEEEEe
Q psy2166 580 DVTKASLKCV 589 (805)
Q Consensus 580 ~~~~~~l~V~ 589 (805)
.+.++.|.|.
T Consensus 91 ~~~t~~l~V~ 100 (101)
T cd05859 91 KSYTFALQIQ 100 (101)
T ss_pred EEEEEEEEEE
Confidence 9999999885
|
IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. |
| >cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.9e-13 Score=108.47 Aligned_cols=81 Identities=25% Similarity=0.386 Sum_probs=68.8
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCC-CceEEEe--e--CCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEE
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG-HRYRTFH--D--FGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 585 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~--~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 585 (805)
|+.++|.|.+. |.|++.++|+|+++.+..+ .++.+.. . ...+.|.|.++..+|+|.|+|.|.|..|..+..+.
T Consensus 1 g~~~~l~C~~~--g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~ 78 (88)
T cd05735 1 GQKKEMSCTAH--GEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQ 78 (88)
T ss_pred CCeEEEEEEEE--CCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEE
Confidence 78999999999 7799999999999988643 4565432 1 22367999999999999999999999999999999
Q ss_pred EEEeeeee
Q psy2166 586 LKCVSKTN 593 (805)
Q Consensus 586 l~V~~~~~ 593 (805)
|.|..+|.
T Consensus 79 L~V~~~P~ 86 (88)
T cd05735 79 LTVQEPPD 86 (88)
T ss_pred EEEeCCCC
Confidence 99998764
|
Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd04970 Ig6_Contactin_like Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-13 Score=109.61 Aligned_cols=78 Identities=23% Similarity=0.251 Sum_probs=62.6
Q ss_pred CeEEEEEEEeecCCCCe--EEEEEECCEEccCCC---CeE-EEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 708 EIAHFEASLIPVGDQTM--TVEFLYNGKPIEASH---RIR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 708 ~~~~l~C~~~~~g~p~~--~v~W~~~g~~l~~~~---~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
+++.|.|.+. |.|.| .+.|+|+|+++.... ++. .........|.|.+++.+|+|.|+|.|.|.+|..+.++.
T Consensus 1 e~~~L~C~~~--g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 78 (85)
T cd04970 1 ESITLQCHAS--HDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASAD 78 (85)
T ss_pred CcEEEEEEEe--cCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEE
Confidence 4689999999 88877 679999999886432 221 112223347999999999999999999999999999999
Q ss_pred EEEEEe
Q psy2166 782 LECVVW 787 (805)
Q Consensus 782 l~V~~~ 787 (805)
|.|..+
T Consensus 79 l~V~~p 84 (85)
T cd04970 79 LIVRGP 84 (85)
T ss_pred EEEECC
Confidence 999764
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.9e-13 Score=111.65 Aligned_cols=80 Identities=23% Similarity=0.344 Sum_probs=68.5
Q ss_pred cccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCC-CceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEE
Q psy2166 507 QLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG-HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 585 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 585 (805)
.+..|++++|.|.+. |.|.|.++|+|+|..+... .++.... ....|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus 14 ~~~~G~~v~L~C~~~--g~P~p~v~W~k~g~~~~~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 89 (95)
T cd05730 14 TANLGQSVTLACDAD--GFPEPTMTWTKDGEPIESGEEKYSFNE--DGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIH 89 (95)
T ss_pred EEeCCCCEEEEEecc--EeCCCEEEEEECCEECcCCCCEEEEeC--CCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEE
Confidence 378999999999999 7789999999999999765 4443332 2346999999999999999999999999999999
Q ss_pred EEEee
Q psy2166 586 LKCVS 590 (805)
Q Consensus 586 l~V~~ 590 (805)
|.|.+
T Consensus 90 L~V~~ 94 (95)
T cd05730 90 LKVFA 94 (95)
T ss_pred EEEEe
Confidence 99875
|
Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the |
| >cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2 | Back alignment and domain information |
|---|
Probab=99.48 E-value=4e-13 Score=106.59 Aligned_cols=76 Identities=24% Similarity=0.327 Sum_probs=67.7
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
|++++|.|.+. |.|.|.++|++++..+....++.+...++...|.|.++..+|+|.|+|.|.|..|.....+.+.+
T Consensus 1 G~~v~l~C~~~--g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVAT--GVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEE--EecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 78999999999 77999999999999998877887777777788999999999999999999999999887776654
|
Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. |
| >cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM) | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.3e-13 Score=111.86 Aligned_cols=90 Identities=21% Similarity=0.353 Sum_probs=71.9
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEE--CCEEccC-----CCceEEEeeCCEEEEEEccCCCCCCE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFY--NGKKLPH-----GHRYRTFHDFGIVILDILYCYEENSG 567 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~--~g~~l~~-----~~~~~~~~~~~~~~L~i~~v~~~d~G 567 (805)
+|++.. +.+.. +.+|+.++|.|.+. |.|.|.++|+| +|..+.. +.++.+....+...|.|.+++.+|+|
T Consensus 2 ~p~i~~-~~~~~-~~~G~~v~l~C~~~--G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G 77 (98)
T cd05870 2 QPHIIQ-LKNET-TVENGAATLSCKAE--GEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSG 77 (98)
T ss_pred CCEEEe-eccEE-EcCCCcEEEEEecc--cCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCE
Confidence 566654 45544 88999999999999 78999999999 4555532 24666555455668999999999999
Q ss_pred EEEEEEEcCCcceEEEEEEEE
Q psy2166 568 VYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 568 ~Y~C~a~n~~g~~~~~~~l~V 588 (805)
.|+|.|.|..|....++.|.|
T Consensus 78 ~Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 78 RYDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEEEeccCCcceeEEEEeC
Confidence 999999999999998888764
|
Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-13 Score=109.35 Aligned_cols=81 Identities=31% Similarity=0.448 Sum_probs=68.7
Q ss_pred cCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcce
Q psy2166 501 QISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD 580 (805)
Q Consensus 501 ~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 580 (805)
.+.+.. +..|+.++|.|.+. |.|.|.+.|+|+|.++....++... ++ .|.|.++..+|+|.|+|.|.|..|..
T Consensus 5 ~p~~~~-~~~G~~~~l~C~~~--g~p~p~v~W~k~g~~~~~~~~~~~~--~~--~L~i~~~~~~D~G~Y~C~a~N~~G~~ 77 (85)
T cd05728 5 VISDTE-ADIGSSLRWECKAS--GNPRPAYRWLKNGQPLASENRIEVE--AG--DLRITKLSLSDSGMYQCVAENKHGTI 77 (85)
T ss_pred cCCccE-EcCCCcEEEEEEee--EeCCCEEEEEECCEECCCCCeEEEe--CC--EEEEeeCCHHHCEEEEEEEECCCCeE
Confidence 344443 89999999999999 7788999999999999877666542 23 59999999999999999999999999
Q ss_pred EEEEEEEE
Q psy2166 581 VTKASLKC 588 (805)
Q Consensus 581 ~~~~~l~V 588 (805)
..++.|.|
T Consensus 78 ~~~~~l~V 85 (85)
T cd05728 78 YASAELAV 85 (85)
T ss_pred EEEEEEEC
Confidence 99888875
|
Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.5e-13 Score=107.40 Aligned_cols=74 Identities=27% Similarity=0.249 Sum_probs=62.8
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
+.|.|.+. |.|.|.|.|+|+++.+..+.+.++........|.|.++..+|+|.|+|.|.|..|.++.++.|.|+
T Consensus 1 ~~L~C~v~--g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAE--GIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEee--ecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 47999999 999999999999999886654333333333479999999999999999999999999999999885
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. |
| >cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.4e-13 Score=109.89 Aligned_cols=83 Identities=30% Similarity=0.494 Sum_probs=66.4
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEE-CCEEccCCCCeEEEe-eCcEEEEEEcCCCCCCCEEEEEEEEcCCc-
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY-NGKPIEASHRIRTVH-AFGMVVLEILGTKIEDTGVYTCRATNKWG- 774 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~-~g~~l~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G- 774 (805)
|.+. .+..|+++.|.|.+. |.|+ .|+|++ +|..+....++.+.. .....+|+|.+++.+|+|.|+|.|.|..|
T Consensus 7 p~~~-~v~~G~~~~l~C~~~--G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~ 82 (92)
T cd04977 7 PSQG-EISVGESKFFLCQVI--GEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT 82 (92)
T ss_pred cCcE-EECCCCeEEEEEEeE--eeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence 4455 899999999999999 8875 999998 777776656655443 34567899999999999999999999976
Q ss_pred cEEEEEEEEE
Q psy2166 775 QAEISVNLEC 784 (805)
Q Consensus 775 ~~~~~~~l~V 784 (805)
....++.|.|
T Consensus 83 ~~~~sv~l~~ 92 (92)
T cd04977 83 ESEATVNLKI 92 (92)
T ss_pred cceeEEEEEC
Confidence 5667776654
|
Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s |
| >cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3) | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-13 Score=102.43 Aligned_cols=66 Identities=18% Similarity=0.272 Sum_probs=56.4
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEe
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
++|.|.+. |.|.|.++|+|||++|... .....|.|.++..+|+|.|+|.|.|..|..+++..|.+.
T Consensus 1 ~~l~c~v~--g~P~P~v~W~kdg~~l~~~--------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVA--AYPPPEFQWYKDGKLISGK--------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEE--EeCCCEEEEEECCEECccc--------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 47999999 7899999999999999632 123469999999999999999999999988888777764
|
Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. |
| >cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.9e-13 Score=106.47 Aligned_cols=73 Identities=34% Similarity=0.522 Sum_probs=62.2
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEE-CCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLY-NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
|+.+.|.|.+. |.|.|.+.|++ ++..+....+..... .+ .|.|.++..+|+|.|+|.|.|..|..+.+++|.|
T Consensus 1 G~~~~l~C~~~--g~P~p~v~W~~~~~~~~~~~~~~~~~~-~~--~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKAR--GDPEPAIHWISPDGKLISNSSRTLVYD-NG--TLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEcc--CcCCCEEEEEeCCCEEecCCCeEEEec-CC--EEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 78999999998 99999999997 677777665554333 34 6999999999999999999999999999888875
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-13 Score=104.83 Aligned_cols=69 Identities=28% Similarity=0.361 Sum_probs=59.0
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
++|.|.+. |.|+|.+.|+|++..+.. .++... ..+ .|.|.++..+|+|.|+|.|.|.+|....++.|.|
T Consensus 1 v~l~C~~~--g~P~p~v~W~k~~~~~~~-~~~~~~-~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVG--GDPVPTVLWRKEDGELPK-GRAEIL-DDK--SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECc--cCCCCEEEEEECCccCCC-CcEEEe-eCC--EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 57999998 999999999999887754 355444 333 6999999999999999999999999999998876
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.1e-13 Score=106.58 Aligned_cols=81 Identities=19% Similarity=0.239 Sum_probs=63.3
Q ss_pred CeEEEEEEEeeCCCCCcEEEEEECCEEccCC---CceEEE-eeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEE
Q psy2166 512 QSAHFEARLTPVTDPDLVVEWFYNGKKLPHG---HRYRTF-HDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587 (805)
Q Consensus 512 ~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~---~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 587 (805)
++++|.|.+.+.+.|.+.++|+|||.+|... .++... .......|.|.+++.+|+|.|+|.|.|..|...+++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 4789999999443444479999999998542 344222 222335799999999999999999999999999999999
Q ss_pred Eeeee
Q psy2166 588 CVSKT 592 (805)
Q Consensus 588 V~~~~ 592 (805)
|..+|
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98754
|
Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 | Back alignment and domain information |
|---|
Probab=99.47 E-value=8e-13 Score=107.30 Aligned_cols=84 Identities=25% Similarity=0.467 Sum_probs=69.6
Q ss_pred cCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEE-CCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 501 QISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFY-NGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 501 ~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
.+.+.. +.+|++++|.|.+. |.|. .++|++ +|..+..+.++.+..++....|.|.++..+|+|.|+|.|+|..|.
T Consensus 6 ~~~~~~-v~~G~~v~l~C~~~--G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 81 (92)
T cd05866 6 SLSKVE-LSVGESKFFTCTAI--GEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQ 81 (92)
T ss_pred EecceE-EcCCCeEEEEEEEE--EeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCc
Confidence 344443 88999999999999 6777 899998 588887777888776676778999999999999999999999998
Q ss_pred e-EEEEEEEE
Q psy2166 580 D-VTKASLKC 588 (805)
Q Consensus 580 ~-~~~~~l~V 588 (805)
. ..+..|.+
T Consensus 82 ~~~~~i~l~~ 91 (92)
T cd05866 82 TQEATVVLEI 91 (92)
T ss_pred EEEEEEEEEE
Confidence 6 55666654
|
Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. |
| >cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.8e-13 Score=111.01 Aligned_cols=76 Identities=22% Similarity=0.327 Sum_probs=63.8
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEc--------cCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPI--------EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 778 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l--------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~ 778 (805)
|+.++|.|.+. |.|.|.|.|+|+|..+ ....++.+.. .+ .|+|.+++.+|+|.|+|.|.|.+|....
T Consensus 1 G~~v~L~C~~~--g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~-~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 75 (90)
T cd05726 1 GRTVTFQCEAT--GNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQ-TG--DLTITNVQRSDVGYYICQTLNVAGSILT 75 (90)
T ss_pred CCEEEEEEECC--ccCCCEEEEEeCCCcceeecccCCCCCCeEEECC-CC--eEEEeeCChhhCEEEEEEEEcCCCceEE
Confidence 78999999998 9999999999998643 2234554432 23 6999999999999999999999999999
Q ss_pred EEEEEEEEe
Q psy2166 779 SVNLECVVW 787 (805)
Q Consensus 779 ~~~l~V~~~ 787 (805)
.+.|.|...
T Consensus 76 ~~~l~V~~~ 84 (90)
T cd05726 76 KAYLEVTDV 84 (90)
T ss_pred EEEEEEeec
Confidence 999999874
|
Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2) | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.4e-13 Score=110.42 Aligned_cols=76 Identities=26% Similarity=0.378 Sum_probs=61.1
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEE----CCEEccCCCC--eEEEee-------CcEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLY----NGKPIEASHR--IRTVHA-------FGMVVLEILGTKIEDTGVYTCRATNKW 773 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~----~g~~l~~~~~--~~~~~~-------~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 773 (805)
|+.+.|.|.+. |.|.|.|+|+| +|..+.+..+ ...... .....|.|.+++.+|+|.|+|.|.|.+
T Consensus 1 G~~v~L~C~~~--g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd05858 1 GSTVEFVCKVY--SDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSI 78 (90)
T ss_pred CCeEEEEEEEe--cCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCC
Confidence 78999999999 99999999998 4555544332 111111 123579999999999999999999999
Q ss_pred ccEEEEEEEEE
Q psy2166 774 GQAEISVNLEC 784 (805)
Q Consensus 774 G~~~~~~~l~V 784 (805)
|....++.|.|
T Consensus 79 G~~~~~a~L~V 89 (90)
T cd05858 79 GISHHSAWLTV 89 (90)
T ss_pred CcccceEEEEE
Confidence 99999999998
|
Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. |
| >cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-13 Score=110.26 Aligned_cols=78 Identities=19% Similarity=0.335 Sum_probs=66.2
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 782 (805)
.+..|+.+.|.|.+. |.|.|.+.|+|+|..+....... .......|.|.++..+|+|.|+|.|.|..|..+.+++|
T Consensus 5 ~~~~G~~v~L~C~~~--g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v 80 (82)
T cd05856 5 ARPVGSSVRLKCVAS--GNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKV 80 (82)
T ss_pred eccCCCeEEEEEEee--EeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEE
Confidence 577899999999998 99999999999999887654432 22334589999999999999999999999999888887
Q ss_pred EE
Q psy2166 783 EC 784 (805)
Q Consensus 783 ~V 784 (805)
.|
T Consensus 81 ~v 82 (82)
T cd05856 81 DV 82 (82)
T ss_pred eC
Confidence 65
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. |
| >cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2) | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.7e-13 Score=108.79 Aligned_cols=85 Identities=25% Similarity=0.425 Sum_probs=71.3
Q ss_pred CCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEe-eCCEEEEEEccCCCCCCEEEEEEEEcCCcce
Q psy2166 502 ISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFH-DFGIVILDILYCYEENSGVYECRATNKYGSD 580 (805)
Q Consensus 502 ~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 580 (805)
++....+.+|+.+.|.|.+. |.|.|.+.|+|+|..+..+.++.+.. ++....|.|.+++.+|+|.|+|.|.|..|..
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~--g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 84 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVF--GNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGE 84 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEE--EeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCce
Confidence 34444589999999999998 67888999999999998776665533 3344579999999999999999999999999
Q ss_pred EEEEEEEE
Q psy2166 581 VTKASLKC 588 (805)
Q Consensus 581 ~~~~~l~V 588 (805)
..++.|.|
T Consensus 85 ~~~~~v~~ 92 (92)
T cd05891 85 TVDVTVSV 92 (92)
T ss_pred eeEEEEEC
Confidence 98888765
|
Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. |
| >cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.7e-13 Score=112.01 Aligned_cols=76 Identities=22% Similarity=0.338 Sum_probs=59.8
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEEC----CEEccCCCC--eEEEe-------eCcEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYN----GKPIEASHR--IRTVH-------AFGMVVLEILGTKIEDTGVYTCRATNKW 773 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~----g~~l~~~~~--~~~~~-------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 773 (805)
|+.+.|.|.+. |.|.|.|+|+|+ |..+..... ..... .+...+|.|.+++.+|+|.|+|.|.|.+
T Consensus 1 G~~v~l~C~v~--g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd04974 1 GSDVEFHCKVY--SDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSI 78 (90)
T ss_pred CCcEEEEEEEe--CCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeeccc
Confidence 78899999999 999999999996 343332211 11111 1223479999999999999999999999
Q ss_pred ccEEEEEEEEE
Q psy2166 774 GQAEISVNLEC 784 (805)
Q Consensus 774 G~~~~~~~l~V 784 (805)
|....++.|+|
T Consensus 79 G~~~~sa~L~V 89 (90)
T cd04974 79 GPSHHSAWLTV 89 (90)
T ss_pred CcccCCEEEEe
Confidence 99999999998
|
Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. |
| >cd04968 Ig3_Contactin_like Third Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.46 E-value=6e-13 Score=108.68 Aligned_cols=87 Identities=21% Similarity=0.313 Sum_probs=71.0
Q ss_pred eEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeC
Q psy2166 67 VFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNL 146 (805)
Q Consensus 67 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 146 (805)
.++...+.+..+.+|+.++|.|.+. |.|.|.++|+|++..+....++.. .+ ..|.|.+++.+|+|.|+|.|.|.
T Consensus 2 ~~~~~~p~~~~~~~g~~v~l~C~~~--g~P~p~v~W~k~~~~~~~~~~~~~--~~--~~L~i~~v~~~D~G~Y~C~a~N~ 75 (88)
T cd04968 2 SIIVVFPKDTYALKGQNVTLECFAL--GNPVPQIKWRKVDGSMPSSAEISM--SG--AVLKIPNIQFEDEGTYECEAENI 75 (88)
T ss_pred CcEEECCCceEEeCCCcEEEEEEee--EeCCCEEEEEECCCcCCCccEEEE--eC--CEEEECCCCcccCEEEEEEEEEC
Confidence 3444455578899999999999998 689999999999887765544432 22 28999999999999999999999
Q ss_pred CeeEEEEEEEEEe
Q psy2166 147 AGETFTSTTIYCS 159 (805)
Q Consensus 147 ~g~~~~~~~l~V~ 159 (805)
.|.....+.|+|+
T Consensus 76 ~G~~~~~~~l~V~ 88 (88)
T cd04968 76 KGKDTHQGRIYVQ 88 (88)
T ss_pred CCcEEEEEEEEEC
Confidence 9999988888873
|
Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.6e-13 Score=109.83 Aligned_cols=81 Identities=31% Similarity=0.459 Sum_probs=66.0
Q ss_pred CCcccccCCCCeEEEEEEE-eecCCCCeEEEEEECCEEccCC-CCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 698 FQHLSNLSEGEIAHFEASL-IPVGDQTMTVEFLYNGKPIEAS-HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~-~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
|.+. .+.+|+++.|.|.+ . |.|.|.+.|+|+|..+... .++.+.. .+ .|.|.++..+|+|.|+|.|.|.+|.
T Consensus 3 p~~~-~~~~G~~v~l~C~~~~--g~p~p~i~W~k~g~~~~~~~~~~~~~~-~~--~L~I~~~~~~D~G~Y~C~a~N~~G~ 76 (86)
T cd05724 3 PSDT-QVAVGEMAVLECSPPR--GHPEPTVSWRKDGQPLNLDNERVRIVD-DG--NLLIAEARKSDEGTYKCVATNMVGE 76 (86)
T ss_pred CccE-EEeCCCCEEEEEECCC--CCCCCEEEEEECCEECCCCCCCEEEcc-CC--EEEEeECCcccCEEEEEEEEeccCc
Confidence 3455 88999999999998 6 8999999999999998873 4444333 33 6999999999999999999999997
Q ss_pred E-EEEEEEEE
Q psy2166 776 A-EISVNLEC 784 (805)
Q Consensus 776 ~-~~~~~l~V 784 (805)
. +..+.|.|
T Consensus 77 ~~s~~~~l~V 86 (86)
T cd05724 77 RESAAARLSV 86 (86)
T ss_pred eeeeeEEEEC
Confidence 5 55666654
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago |
| >cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4 | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.2e-13 Score=106.25 Aligned_cols=81 Identities=17% Similarity=0.236 Sum_probs=65.6
Q ss_pred CeEEEEEEEeeCCCCCcEEEEEECCEEccC---CCceEEEee-CCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEE
Q psy2166 512 QSAHFEARLTPVTDPDLVVEWFYNGKKLPH---GHRYRTFHD-FGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587 (805)
Q Consensus 512 ~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~---~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 587 (805)
+++.|.|.+.+.+.+++.|.|+|||++|.. +.++..... .....|.|.+++.+|+|+|+|.|.|..+....++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 468999999855677999999999999962 234443211 1223599999999999999999999999999999999
Q ss_pred Eeeee
Q psy2166 588 CVSKT 592 (805)
Q Consensus 588 V~~~~ 592 (805)
|..+|
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 99765
|
Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16. |
| >cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.1e-13 Score=103.98 Aligned_cols=75 Identities=23% Similarity=0.410 Sum_probs=61.7
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCce-EEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEe
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY-RTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
|+.++|.|.+. |.|.|+++|+|||.++...... .....++ .|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus 1 G~~v~l~C~~~--G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 76 (76)
T cd05867 1 GETARLDCQVE--GIPTPNITWSINGAPIEGTDPDPRRHVSSG--ALILTDVQPSDTAVYQCEARNRHGNLLANAHVHVV 76 (76)
T ss_pred CCeEEEEEEee--EeCCCeEEEEECCEECCCCCCCceEEeeCC--EEEECCCChhhCEEEEEEEECCCCeEEEEEEEEEC
Confidence 78999999999 7788999999999998654211 1122222 59999999999999999999999999999988873
|
Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd04969 Ig5_Contactin_like Fifth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.8e-13 Score=104.70 Aligned_cols=73 Identities=25% Similarity=0.413 Sum_probs=64.7
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
|+.+.|.|.+. |.|.|.++|+|++..+..+.++.+..++ .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~L~C~~~--g~P~p~v~W~k~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPK--AAPKPTISWSKGTELLTNSSRICIWPDG---SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeee--EcCCCEEEEEECCEEcccCCCEEECCCC---eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 78999999998 6788999999999999877777754443 4999999999999999999999999999988875
|
Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.3e-13 Score=110.51 Aligned_cols=90 Identities=20% Similarity=0.315 Sum_probs=72.2
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCC-----CceEEEeeCCEEEEEEccCCCCCCEEE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG-----HRYRTFHDFGIVILDILYCYEENSGVY 569 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~-----~~~~~~~~~~~~~L~i~~v~~~d~G~Y 569 (805)
+|+|. .+.+.. +.+|++++|.|.+. |.|.|.++|++++..+... .++.+........|.|.+++.+|+|.|
T Consensus 2 ~P~i~-~~~~~~-~~~g~~v~l~C~~~--g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 77 (96)
T cd05732 2 QPKIT-YLENQT-AVELEQITLTCEAE--GDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRY 77 (96)
T ss_pred Cccce-ecCcee-EecCCcEEEEEEEe--EcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEe
Confidence 46665 344443 88999999999999 6788899999999776542 244444445567899999999999999
Q ss_pred EEEEEcCCcceEEEEEEEE
Q psy2166 570 ECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 570 ~C~a~n~~g~~~~~~~l~V 588 (805)
+|.|.|..|....++.|.|
T Consensus 78 ~C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 78 DCEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEEeCCCCcEEEEEEeC
Confidence 9999999999988888764
|
Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole |
| >cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs) | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.5e-13 Score=106.37 Aligned_cols=76 Identities=17% Similarity=0.295 Sum_probs=60.1
Q ss_pred ecCCcccccCCCCeEEEEEEEeecCCCCe-EEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy2166 696 SEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 774 (805)
Q Consensus 696 ~~~~~~~~v~~G~~~~l~C~~~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G 774 (805)
..|.+. .+.+|+.+.|.|.+. |+|.| .|.|+|||.++..... .....|.|.++. |+|.|.|.|+|.+|
T Consensus 3 ~~P~~~-~v~~G~~v~l~C~a~--G~P~P~~I~W~k~g~~l~~~~~------~~~s~L~i~~~~--d~g~Y~C~A~N~~G 71 (81)
T cd05749 3 VEPEDL-SVTANTPFNLTCQAV--GPPEPVEILWWQGGSPLGDPPA------PSPSVLNVPGLN--ETSKFSCEAHNAKG 71 (81)
T ss_pred CCCCce-EEcCCCCEEEEEEee--eecCCeEEEEEECCEECCCCCC------CCCCEEEEcccc--CCeEEEEEEEeccC
Confidence 445666 899999999999999 99999 7999999999865211 112379998874 78999999999999
Q ss_pred cEEE-EEEE
Q psy2166 775 QAEI-SVNL 782 (805)
Q Consensus 775 ~~~~-~~~l 782 (805)
.... .++|
T Consensus 72 ~~~s~~a~~ 80 (81)
T cd05749 72 VTTSRTGTV 80 (81)
T ss_pred cEEeeeEEe
Confidence 6654 5554
|
Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c |
| >cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.2e-13 Score=104.59 Aligned_cols=75 Identities=23% Similarity=0.380 Sum_probs=61.9
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCce-EEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEe
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY-RTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
|++++|.|.+. |.|.|+|+|+|||+++...... ....+++ .|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 1 g~~~~l~C~a~--G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICRAN--GNPKPSISWLTNGVPIEIAPTDPSRKVDGD--TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred CCCEEEEEEee--EeCCCeEEEEECCEEccccCCCceEEecCC--EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 78899999999 7899999999999998643221 1122333 58999999999999999999999999999999873
|
Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-12 Score=110.87 Aligned_cols=98 Identities=21% Similarity=0.276 Sum_probs=74.8
Q ss_pred CCCCceEecCCCcccc---cCCCeEEEEEEEeeCCCCCcEEEEEECCEEccC-CCceEEE--eeC--CEEEEEEccCC-C
Q psy2166 493 AEAPKFITQISDVTQL---KEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPH-GHRYRTF--HDF--GIVILDILYCY-E 563 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v---~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~-~~~~~~~--~~~--~~~~L~i~~v~-~ 563 (805)
..+|.|...+.....+ ..|..++|.|.+. |.|.+.++|+|||..|.. +.++.+. ..+ ..+.|.|.++. .
T Consensus 2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~--G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~ 79 (109)
T cd05773 2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQ--GVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAA 79 (109)
T ss_pred ccccccccCCceEEEEEecCCCCEEEEEEECc--ccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCcc
Confidence 4567776654422222 2568999999999 789999999999999864 3455432 111 24679999987 5
Q ss_pred CCCEEEEEEEEcCCcceEEEEEEEEeeee
Q psy2166 564 ENSGVYECRATNKYGSDVTKASLKCVSKT 592 (805)
Q Consensus 564 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 592 (805)
+|.|.|+|.|.|..|.....+.|.|..+|
T Consensus 80 ~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 80 LDYALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred CCCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence 89999999999999999999999998765
|
Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p |
| >cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.8e-13 Score=110.47 Aligned_cols=84 Identities=21% Similarity=0.294 Sum_probs=65.6
Q ss_pred eecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCC--eEEEeeCcEEEEEEcCC-----CCCCCEEEEE
Q psy2166 695 TSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR--IRTVHAFGMVVLEILGT-----KIEDTGVYTC 767 (805)
Q Consensus 695 ~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~~~~~~~L~i~~v-----~~~d~G~Y~C 767 (805)
...|.+. .+.+|+++.|.|.+. |.|.|.|+|+|||..+..... ..+..+ + .|.|.++ .++|+|.|+|
T Consensus 3 ~~~P~~~-~~~~g~~v~l~C~v~--g~P~p~i~W~k~g~~l~~~~~~~~~~~~~-~--~l~i~~v~~~~~~~~D~G~Y~C 76 (95)
T cd05722 3 LSEPSDI-VAVRGGPVVLNCSAE--GEPPPKIEWKKDGVLLNLVSDERRQQLPN-G--SLLITSVVHSKHNKPDEGFYQC 76 (95)
T ss_pred EECCCCe-EEcCCCCEEEeeecc--cCCCCEEEEEECCeECccccCcceEEccC-C--eEEEeeeeccCCCCCcCEEEEE
Confidence 3445666 788999999999999 999999999999999876543 333333 3 3556555 6899999999
Q ss_pred EEEcC-CccE-EEEEEEEE
Q psy2166 768 RATNK-WGQA-EISVNLEC 784 (805)
Q Consensus 768 ~a~N~-~G~~-~~~~~l~V 784 (805)
.|.|. +|.. +..+.|+|
T Consensus 77 ~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 77 VAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred EEECCccCcEEEeeeEEeC
Confidence 99999 9976 66777765
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.8e-13 Score=104.80 Aligned_cols=70 Identities=26% Similarity=0.395 Sum_probs=58.8
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEcc--CCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCcc-EEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIE--ASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ-AEISVNLEC 784 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~-~~~~~~l~V 784 (805)
++|.|.+. |.|.|.|+|+|++.++. ...++.. ...+ .|.|.++..+|+|.|+|.|.|.+|. .+.++.|.|
T Consensus 1 a~l~C~~~--G~P~p~v~W~k~~~~~~~~~~~~~~~-~~~g--~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAAS--GNPDPEITWFKDFLPVDTTSNGRIKQ-LRSG--ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEe--EecCCEEEEEECCEECccCCCCCEEE-cCCc--EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 47999998 99999999999999887 3445543 2333 5999999999999999999999997 578888877
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. |
| >cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.6e-13 Score=104.08 Aligned_cols=70 Identities=24% Similarity=0.316 Sum_probs=58.8
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
+.|.|.+. |.|.|.+.|+|++..+... +..... ....|.|.+++.+|+|.|+|.|.|.+|..+.++.|.|
T Consensus 1 v~l~C~~~--g~P~p~v~W~k~~~~~~~~-~~~~~~--~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAE--GLPTPEISWIKIGGELPAD-RTKFEN--FNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEee--EecCCeEEEEECCeECCCC-ceeEec--CCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 47999999 9999999999999887643 322222 2337999999999999999999999999999998887
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. |
| >cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.1e-13 Score=105.18 Aligned_cols=71 Identities=20% Similarity=0.357 Sum_probs=59.7
Q ss_pred EEEEEEEeecC-CCCeEEEEEECCEEccCCCCeE---EEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEE
Q psy2166 710 AHFEASLIPVG-DQTMTVEFLYNGKPIEASHRIR---TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782 (805)
Q Consensus 710 ~~l~C~~~~~g-~p~~~v~W~~~g~~l~~~~~~~---~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 782 (805)
+.|.|.+. | .|.|.++|+|+|+.+..+.+.. +........|.|.+++.+|+|.|+|.|.|.+|.+..++.+
T Consensus 1 ~~l~C~~~--g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~~ 75 (75)
T cd05750 1 LVLKCEAT--SEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTANV 75 (75)
T ss_pred CEEEEEcc--CCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEeC
Confidence 46999999 8 9999999999999998765432 3344456789999999999999999999999998887753
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv |
| >cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.7e-12 Score=105.38 Aligned_cols=79 Identities=22% Similarity=0.334 Sum_probs=66.1
Q ss_pred ccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceE-EEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEE
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR-TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 586 (805)
+.+|+.++|.|.+. |.|.|.++|+|+|..+..+.+.. .........|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus 6 v~~G~~~~L~C~~~--g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 83 (85)
T cd05857 6 VPAANTVKFRCPAA--GNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 83 (85)
T ss_pred cCCCCEEEEEEEcC--CCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence 78999999999998 77999999999999997654432 1112234469999999999999999999999999999888
Q ss_pred EE
Q psy2166 587 KC 588 (805)
Q Consensus 587 ~V 588 (805)
.|
T Consensus 84 ~v 85 (85)
T cd05857 84 DV 85 (85)
T ss_pred EC
Confidence 75
|
Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. |
| >cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=104.01 Aligned_cols=78 Identities=21% Similarity=0.422 Sum_probs=65.9
Q ss_pred CCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEEE
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTS 153 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~ 153 (805)
....+.+|+.++|.|.+. +. .+.|.|+|||.+|..+.++.+..+ +|.|.+++.+|+|.|+|.|.|..|.....
T Consensus 2 ~~~~~~~G~~v~l~C~~~--~~-~~~v~W~k~g~~l~~~~~~~~~~~----~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~ 74 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLR--DD-VQSINWTKDGVQLGENNRTRITGE----EVQIKDAVPRDSGLYACVTSSPSGSDTTY 74 (79)
T ss_pred CcEEecCCCCEEEEEEec--CC-CceEEEeeCCcCCCCCceEEEeCC----EEEECCCChhhCEEEEEEEeCCCCcccEE
Confidence 356889999999999998 34 568999999999988878776532 79999999999999999999998887777
Q ss_pred EEEEE
Q psy2166 154 TTIYC 158 (805)
Q Consensus 154 ~~l~V 158 (805)
+.|.|
T Consensus 75 ~~v~V 79 (79)
T cd04973 75 FSVNV 79 (79)
T ss_pred EEEeC
Confidence 66654
|
Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. |
| >cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.2e-12 Score=108.86 Aligned_cols=91 Identities=23% Similarity=0.444 Sum_probs=69.1
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCC-----CceEEEeeCCEEEEEEc--cCCCCCCE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG-----HRYRTFHDFGIVILDIL--YCYEENSG 567 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~-----~~~~~~~~~~~~~L~i~--~v~~~d~G 567 (805)
+|.|...+.+.. +.+|+.++|.|.+. |.|.|.++|+|+|+.+... .+.....++....+.+. .+..+|+|
T Consensus 1 ~P~i~~~p~~~~-v~~G~~~~l~C~~~--g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G 77 (100)
T cd07693 1 PPRIVEHPSDLI-VSKGDPATLNCKAE--GRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEG 77 (100)
T ss_pred CCeEEecCceeE-EcCCCeEEEEeeCC--cCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCE
Confidence 577777766654 89999999999999 7899999999999998651 22223334444444443 33689999
Q ss_pred EEEEEEEcCCcc-eEEEEEEEE
Q psy2166 568 VYECRATNKYGS-DVTKASLKC 588 (805)
Q Consensus 568 ~Y~C~a~n~~g~-~~~~~~l~V 588 (805)
.|+|.|.|..|. .+..+.|.|
T Consensus 78 ~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 78 VYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEEEccccceecceEEEEe
Confidence 999999999999 677777776
|
Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res |
| >cd04967 Ig1_Contactin First Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-12 Score=106.25 Aligned_cols=82 Identities=23% Similarity=0.297 Sum_probs=63.5
Q ss_pred CeeeecCCcccccC---CCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCC-CCCCEEEEE
Q psy2166 692 PQFTSEFQHLSNLS---EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTK-IEDTGVYTC 767 (805)
Q Consensus 692 P~~~~~~~~~~~v~---~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C 767 (805)
|.|...|.++ .+. .|+.+.|.|.+. |+|.|.|+|+|+|+.+.......+....+ .|.|.++. .+|+|.|+|
T Consensus 2 P~f~~~p~~~-~~~~~~~~~~~~l~C~~~--g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C 76 (91)
T cd04967 2 PVFEEQPDDT-IFPEESDEGKVSLNCRAR--GSPPPTYRWLMNGTEIDDEPDSRYSLVGG--NLVISNPSKAKDAGRYQC 76 (91)
T ss_pred CeeEeCCCCE-EccCCCCCCEEEEEEeee--EcCCCEEEEEECCEECCCCCCCCEEEECC--EEEEecCCccCCCEEEEE
Confidence 6677777776 544 446799999998 99999999999999985433333333344 68898887 489999999
Q ss_pred EEEcCCccEEE
Q psy2166 768 RATNKWGQAEI 778 (805)
Q Consensus 768 ~a~N~~G~~~~ 778 (805)
.|+|.+|...+
T Consensus 77 ~a~N~~G~~~S 87 (91)
T cd04967 77 LASNIVGTVLS 87 (91)
T ss_pred EEEcCCCEEEe
Confidence 99999997655
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata |
| >cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related) | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.5e-12 Score=103.20 Aligned_cols=75 Identities=21% Similarity=0.303 Sum_probs=62.7
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCce-EEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEe
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY-RTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
|+.++|.|.+. |.|.|.++|+++|..+...... ..... ...|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus 1 G~~~~l~C~~~--g~P~p~i~W~~~g~~~~~~~~~~~~~~~--~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~ 76 (76)
T cd04978 1 GETGRLDCEAE--GIPQPTITWRLNGVPIEELPPDPRRRVD--GGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV 76 (76)
T ss_pred CCeEEEEEEce--eeCCCEEEEEECCEECCCCCCcceEEcc--CCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence 78999999998 7899999999999998755432 12222 2369999999999999999999999999999998873
|
Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1) | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=99.79 Aligned_cols=71 Identities=18% Similarity=0.098 Sum_probs=56.8
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
+.|.|.+. |.|+|.+.|+|+|.++..+.. ....+++ +|.|.+++.+|+|.|+|.|+|..+.......++..
T Consensus 1 ~~l~c~v~--g~P~P~v~W~kdg~~l~~~~~-~~~~~~~--~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~~ 71 (72)
T cd07702 1 YRLTPKVK--AFPAPEVIWLKDGLPAAEKCS-RYHVDGY--SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITLI 71 (72)
T ss_pred CeEEeeEE--EcCCCeEEEEECCEECCCCCc-EEEeCCC--EEEECcCCHHHCEEEEEEEEccccceEeeEEEEEE
Confidence 47999999 999999999999999876532 2223333 79999999999999999999998766666655543
|
Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.40 E-value=7e-13 Score=108.51 Aligned_cols=78 Identities=22% Similarity=0.309 Sum_probs=64.6
Q ss_pred ccCCCCeEEEEEEEeecC-----CCCeEEEEEECCEEccCC--CCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 703 NLSEGEIAHFEASLIPVG-----DQTMTVEFLYNGKPIEAS--HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g-----~p~~~v~W~~~g~~l~~~--~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
.+.+|+.+.|.|.+. | .|.+.|.|+|+|..+... ...++...++ .|.|.++..+|+|.|+|.|.|..|.
T Consensus 10 ~v~~G~~~~L~C~~~--g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~--~L~I~~~~~~DsG~Y~C~~~N~~g~ 85 (94)
T cd05756 10 YVLEGEPVVIKCPLF--YSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKD--LLWFLPAALEDSGLYTCVVRNSTYC 85 (94)
T ss_pred EEecCCCeEEECCCC--CcccccCCCceEEEEEcCCCCcccccccceeeecCC--eEEEccCCcccCeEEEEEEcCCCcc
Confidence 678999999999998 7 689999999999764321 2233333344 7999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy2166 776 AEISVNLEC 784 (805)
Q Consensus 776 ~~~~~~l~V 784 (805)
.+.++.|+|
T Consensus 86 ~~~~~~L~v 94 (94)
T cd05756 86 MKVSISLTV 94 (94)
T ss_pred EEEEEEEEC
Confidence 999999876
|
Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.8e-13 Score=101.73 Aligned_cols=68 Identities=21% Similarity=0.349 Sum_probs=59.3
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 586 (805)
|+|.|.+. |.|.|.++|+|+|..+..+.++.+..++ .|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus 1 v~L~C~~~--g~P~p~i~W~k~g~~~~~~~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQ--GDPEPTITWNKDGVQVTESGKFHISPEG---YLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecce--EeCCCEEEEEECCEECCCCCCEEECCCC---EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 57999999 7789999999999999877777654332 59999999999999999999999999888776
|
Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. |
| >cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2) | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.2e-12 Score=103.35 Aligned_cols=89 Identities=20% Similarity=0.264 Sum_probs=71.0
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCe-EEEEEECCEEccCC--CCeEEEee----CcEEEEEEcCCCCCC-C
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEAS--HRIRTVHA----FGMVVLEILGTKIED-T 762 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~-~v~W~~~g~~l~~~--~~~~~~~~----~~~~~L~i~~v~~~d-~ 762 (805)
||.| ...... .+.+|+++.|.|.+. +.|+| .|.|.+++..+..+ .++.+... +..+.|.|.++.+.| .
T Consensus 2 pP~i-~~~~s~-~~~~G~~~~L~C~~~--s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~ 77 (98)
T cd05898 2 PPII-SSEQVQ-YAVRGERGKVKCFIG--STPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQ 77 (98)
T ss_pred CCEE-ecCceE-EEeCCCcEEEEEEEc--cCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCC
Confidence 6766 444455 799999999999997 66665 67899888877654 57776554 357889999998766 8
Q ss_pred EEEEEEEEcCCccEEEEEEEE
Q psy2166 763 GVYTCRATNKWGQAEISVNLE 783 (805)
Q Consensus 763 G~Y~C~a~N~~G~~~~~~~l~ 783 (805)
|.|.|.|.|.+|+++..++|.
T Consensus 78 g~Y~C~a~N~~G~d~~~i~L~ 98 (98)
T cd05898 78 THYNCTAWNSFGSGTAIIQLE 98 (98)
T ss_pred cEEEEEEEeCCccceEEEEeC
Confidence 999999999999999988873
|
Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm. |
| >cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2) | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-12 Score=99.35 Aligned_cols=69 Identities=22% Similarity=0.365 Sum_probs=56.9
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEe
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
+.|.|.+. |.|.|.++|+|||++|..+.++. .+ ..|.|.++..+|+|.|+|.|.|..|......++.+.
T Consensus 1 ~~~~c~v~--G~P~P~v~W~k~g~~l~~~~~~~---~~--~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYY--GYPPPEVKWYKNGQLIVLNHTFK---RG--VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEE--EeCCCEEEEEECCEECCCCCEEc---cC--CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 47899999 78999999999999997654321 22 359999999999999999999999988777666654
|
Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-12 Score=104.11 Aligned_cols=76 Identities=24% Similarity=0.342 Sum_probs=57.9
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCE-----EccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGK-----PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~-----~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
|+.++|.|.+. |.|.|.|+|+|++. .+.+..............|.|.++..+|+|.|+|.|.|.+|....++.
T Consensus 1 G~~v~l~C~~~--g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 78 (81)
T cd05765 1 GETASFHCDVT--GRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFP 78 (81)
T ss_pred CCcEEEEeecc--ccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEE
Confidence 78999999998 99999999999742 111111100011112247999999999999999999999999999999
Q ss_pred EEE
Q psy2166 782 LEC 784 (805)
Q Consensus 782 l~V 784 (805)
|.|
T Consensus 79 l~v 81 (81)
T cd05765 79 LSV 81 (81)
T ss_pred EeC
Confidence 876
|
Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05848 Ig1_Contactin-5 First Ig domain of contactin-5 | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.4e-12 Score=103.36 Aligned_cols=83 Identities=25% Similarity=0.358 Sum_probs=62.4
Q ss_pred CceEecCCCcccc--cCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCC-CCCCEEEEEE
Q psy2166 496 PKFITQISDVTQL--KEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCY-EENSGVYECR 572 (805)
Q Consensus 496 P~~~~~~~~~~~v--~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~ 572 (805)
|.|+..+.+.... .+|+.++|.|.+. |.|.|+|+|+|||..|...........++ .|.|.++. .+|+|.|+|.
T Consensus 2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~--G~P~P~i~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~ 77 (94)
T cd05848 2 PVFVQEPDDAIFPTDSDEKKVILNCEAR--GNPVPTYRWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQCL 77 (94)
T ss_pred CeeEECCCcEEccCCCCCCEEEEEEEee--ecCCCEEEEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEEE
Confidence 5666666654322 3589999999999 78999999999999996543333322233 48888874 6999999999
Q ss_pred EEcCCcceEE
Q psy2166 573 ATNKYGSDVT 582 (805)
Q Consensus 573 a~n~~g~~~~ 582 (805)
|.|..|....
T Consensus 78 A~N~~G~~~S 87 (94)
T cd05848 78 ATNSIGSILS 87 (94)
T ss_pred EEcCCCeEEe
Confidence 9999998753
|
Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. |
| >cd04970 Ig6_Contactin_like Sixth Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.1e-12 Score=102.88 Aligned_cols=79 Identities=23% Similarity=0.296 Sum_probs=62.0
Q ss_pred CeEEEEEEEeeCCCCCc--EEEEEECCEEccCCC---ceE-EEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEE
Q psy2166 512 QSAHFEARLTPVTDPDL--VVEWFYNGKKLPHGH---RYR-TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 585 (805)
Q Consensus 512 ~~v~L~C~v~~~g~p~~--~v~W~~~g~~l~~~~---~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 585 (805)
++++|.|.+. |.|.| .+.|+|||+.|.... ++. .........|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus 1 e~~~L~C~~~--g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~ 78 (85)
T cd04970 1 ESITLQCHAS--HDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASAD 78 (85)
T ss_pred CcEEEEEEEe--cCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEE
Confidence 4689999999 55554 789999999986332 222 111223346999999999999999999999999999999
Q ss_pred EEEeeee
Q psy2166 586 LKCVSKT 592 (805)
Q Consensus 586 l~V~~~~ 592 (805)
|.|..+|
T Consensus 79 l~V~~pP 85 (85)
T cd04970 79 LIVRGPP 85 (85)
T ss_pred EEEECCC
Confidence 9998754
|
Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week |
| >cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-12 Score=99.45 Aligned_cols=71 Identities=23% Similarity=0.281 Sum_probs=57.4
Q ss_pred EEEEEEeeCCCCCcEEEEEECCEEccCCCceEE--Ee---eCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEE
Q psy2166 515 HFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT--FH---DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587 (805)
Q Consensus 515 ~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~--~~---~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 587 (805)
-|.|.+. |.|.|+|+|+|||++|..+.+... .. ......|.|.++..+|+|.|+|.|+|..|....++.+.
T Consensus 2 ~i~~~v~--G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVK--GNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEe--EeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 3789999 789999999999999987655422 11 12345799999999999999999999999988877653
|
TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. |
| >cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.2e-12 Score=102.03 Aligned_cols=80 Identities=25% Similarity=0.339 Sum_probs=65.0
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFT 152 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~ 152 (805)
+.+..+.+|+.++|.|.+. |. .|.|.|+||+..+..+ ++.+..+++ +|+|.+++.+|+|.|+|.|.|..|...+
T Consensus 10 ~~~~~v~~g~~v~l~C~a~--g~-~p~i~W~kng~~l~~~-~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~S 83 (91)
T cd05740 10 VGNQPPEDNQPVTLTCEAE--GQ-ATYIWWVNNGSLLVPP-RLQLSNDNR--TLTFNNVTRSDTGHYQCEASNEVSNMTS 83 (91)
T ss_pred cCccccccCCcEEEEEEeC--CC-CCEEEEEECCEECCCC-CEEEeCCCC--EEEECcCChhhCEEEEEEEEcCCCCEEe
Confidence 4467899999999999999 56 8899999999988653 555554433 7999999999999999999999987655
Q ss_pred -EEEEEE
Q psy2166 153 -STTIYC 158 (805)
Q Consensus 153 -~~~l~V 158 (805)
...|.|
T Consensus 84 ~~~~L~V 90 (91)
T cd05740 84 DPYILNV 90 (91)
T ss_pred eeEEEEe
Confidence 455555
|
Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the |
| >cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.6e-12 Score=99.90 Aligned_cols=71 Identities=24% Similarity=0.265 Sum_probs=58.0
Q ss_pred EEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEe-------eCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEE
Q psy2166 515 HFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFH-------DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587 (805)
Q Consensus 515 ~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~-------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 587 (805)
.|.|.+. |.|.|.|+|+|||++|..+....... ......|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 2 ~i~~~v~--G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVR--GNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeE--eeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 4789999 78999999999999998765443321 12355799999999999999999999999998877664
|
TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun |
| >cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-12 Score=101.94 Aligned_cols=65 Identities=23% Similarity=0.315 Sum_probs=51.3
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCC--CeEEEeeCcEEEEEEcCCCC----CCCEEEEEEEEcCCccEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASH--RIRTVHAFGMVVLEILGTKI----EDTGVYTCRATNKWGQAEI 778 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~--~~~~~~~~~~~~L~i~~v~~----~d~G~Y~C~a~N~~G~~~~ 778 (805)
+.|.|.+. |+|.|.|+|+|||.++.... ++.+....+ .|.|.++.. +|+|.|+|+|.|.+|...+
T Consensus 1 i~l~C~~~--G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g--~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAK--GNPPPTFSWTRNGTHFDPEKDPRVTMKPDSG--TLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCc--ccCCCeEEEEECCeECCCCCCCCEEEeCCCC--EEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 47999999 99999999999999986543 444434345 677777753 7999999999999997554
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. |
| >cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.37 E-value=5e-12 Score=96.92 Aligned_cols=68 Identities=22% Similarity=0.362 Sum_probs=56.5
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEE
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 586 (805)
|++++|.|.+. |.|.|.|+|+|+|+++....++.. +...|.|.++ .|+|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C~a~--G~P~P~v~W~k~g~~l~~~~~~~~----~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAV--GAPMPYVKWMKGGEELTKEDEMPV----GRNVLELTNI--YESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEee--ecCCCEEEEEECCEECCCccceec----CccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence 78899999999 789999999999999876554332 2236889886 48999999999999998888776
|
Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). |
| >cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.3e-12 Score=99.94 Aligned_cols=71 Identities=20% Similarity=0.239 Sum_probs=58.7
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEe
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
+.|.|.+. |.|.|.+.|+|++..+..+. ...... ...|.|.+++.+|+|.|+|.|.|..|..+.++.|.|+
T Consensus 1 ~~L~C~~~--G~P~P~v~W~k~~~~~~~~~-~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve 71 (71)
T cd05876 1 LVLECIAE--GLPTPEVHWDRIDGPLSPNR-TKKLNN--NKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE 71 (71)
T ss_pred CEEEEEee--EecCCeEEEEECCcCCCCCc-eeEEcC--CCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence 47999999 78999999999998876543 222222 2369999999999999999999999999999888874
|
Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. |
| >cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR) | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.6e-12 Score=98.63 Aligned_cols=70 Identities=26% Similarity=0.312 Sum_probs=59.5
Q ss_pred EEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy2166 84 LHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCS 159 (805)
Q Consensus 84 v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 159 (805)
+.|.|.+. |.|.|.+.|+|||..+..+.++... ..+|.|.+++.+|+|.|+|.|.|..|......++.|.
T Consensus 1 ~~l~c~v~--g~P~p~v~W~k~g~~l~~~~~~~~~----~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVK--AYPPPEIQWYKNGKLISEKNRTKKS----GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEE--EeCCCEEEEEECCEECCCCCEEEcC----CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 47999999 7899999999999999877555432 2379999999999999999999999988888777764
|
Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa |
| >cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4 | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.2e-12 Score=99.73 Aligned_cols=71 Identities=23% Similarity=0.462 Sum_probs=56.3
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCC-ceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGH-RYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
++|.|.+. |.|.|.++|+|+|.++..+. ++.+...+ ..|.|.++..+|+|.|+|.|.|..|....+..+++
T Consensus 1 v~L~C~~~--g~P~p~v~W~k~g~~l~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l 72 (77)
T cd05760 1 VTLRCHID--GHPRPTYQWFRDGTPLSDGQGNYSVSSKE--RTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL 72 (77)
T ss_pred CEEEEEee--ecCCCcEEEEECCEECCCCCccEEEeCCC--CEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence 58999999 77899999999999996653 33333322 36999999999999999999999999865444444
|
Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s |
| >cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-11 Score=109.01 Aligned_cols=116 Identities=16% Similarity=0.155 Sum_probs=85.9
Q ss_pred EEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCC
Q psy2166 628 ILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEG 707 (805)
Q Consensus 628 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G 707 (805)
.|.|.+++.+|+|.|.|.+.+..|.......|.|.. ||.+...+... ...+|
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~---------------------------~P~v~~~~~~~-~~~~~ 53 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSE---------------------------PPRVRLSLEKL-VSMIE 53 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEec---------------------------CCceEEeCCCc-eeecC
Confidence 489999999999999999999999998999999984 56666555554 45579
Q ss_pred CeEEEEEEEeecCC-CC-eEEEEEECCEEccC-----CCC----eEEEeeCc---EEEEEEcCCCCCCCEEEEEEEEcCC
Q psy2166 708 EIAHFEASLIPVGD-QT-MTVEFLYNGKPIEA-----SHR----IRTVHAFG---MVVLEILGTKIEDTGVYTCRATNKW 773 (805)
Q Consensus 708 ~~~~l~C~~~~~g~-p~-~~v~W~~~g~~l~~-----~~~----~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~ 773 (805)
+.++|.|.+. |. |. +.|+|+++|..... .+. .....++. .+.|.|..-..++.+.|+|.|.+..
T Consensus 54 ~~~~L~C~a~--g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 54 EPQTLICHIA--GYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred CcEEEEEEEC--CCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 9999999998 64 54 58999999864221 111 11112222 2468887777777889999998754
|
IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal. |
| >cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.1e-12 Score=101.33 Aligned_cols=77 Identities=18% Similarity=0.291 Sum_probs=59.7
Q ss_pred CeeeecCCcccccCCCCeEEEEEEEeecCCCC-eEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEE
Q psy2166 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQT-MTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 770 (805)
Q Consensus 692 P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~-~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 770 (805)
|.+...|... .+.+|++++|.|.+. |.|. +.+.|+|||+.+... ++ .|.|.++ .+|+|.|+|.|.
T Consensus 1 ~vv~~~P~~~-~v~~G~~V~L~C~~~--~~p~~~~~~W~kng~~l~~~--------~~--~l~i~~~-~~dsG~Y~C~a~ 66 (78)
T cd05752 1 AVVSLDPPWT-TIFQGEKVTLTCNGF--NSPEQNSTQWYHNGKLLETT--------TN--SYRIRAA-NNDSGEYRCQTQ 66 (78)
T ss_pred CeEEeCCCCe-EeeCCCCEEEEEeCC--CCCCCccEEEEECCEEeecc--------CC--eEEEeec-ccCCEEeEEECC
Confidence 4556666667 899999999999998 8776 479999999987321 22 6899999 999999999999
Q ss_pred cCCccEEEEEEEEE
Q psy2166 771 NKWGQAEISVNLEC 784 (805)
Q Consensus 771 N~~G~~~~~~~l~V 784 (805)
|. ..+..++|+|
T Consensus 67 ~~--~~S~~v~l~V 78 (78)
T cd05752 67 GS--SLSDPVHLEV 78 (78)
T ss_pred CC--cCCCCEEEeC
Confidence 85 4444444443
|
Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05850 Ig1_Contactin-2 First Ig domain of contactin-2 | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-11 Score=100.59 Aligned_cols=84 Identities=29% Similarity=0.470 Sum_probs=61.9
Q ss_pred CceEecCCCcccccC---CCeEEEEEEEeeCCCCCcEEEEEECCEEccCC--CceEEEeeCCEEEEEEccCC-CCCCEEE
Q psy2166 496 PKFITQISDVTQLKE---GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG--HRYRTFHDFGIVILDILYCY-EENSGVY 569 (805)
Q Consensus 496 P~~~~~~~~~~~v~~---G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~--~~~~~~~~~~~~~L~i~~v~-~~d~G~Y 569 (805)
|.|...+.+.. +.+ |++++|.|.+. |.|.|.|+|++||..+... .++.+. ++ .|.|.++. .+|+|.|
T Consensus 2 P~f~~~P~~~~-~~~~~~g~~v~l~C~a~--g~P~p~i~W~~~g~~l~~~~~~~~~~~--~g--~L~I~~~~~~~D~G~Y 74 (94)
T cd05850 2 PVFEEQPSSLL-FPEGSPEEKVTLGCRAR--ASPPATYRWKMNGTEIKFAPESRYTLV--AG--NLVINNPQKARDAGSY 74 (94)
T ss_pred CeeEECCCCEE-ecCCCCCCeEEEEeEce--eCCCCEEEEEECCEECccCCCceEEEE--CC--eEEEccCCccCcCEEE
Confidence 55666555544 434 57899999999 7899999999999999643 333332 23 48887755 5999999
Q ss_pred EEEEEcCCcceEE-EEEE
Q psy2166 570 ECRATNKYGSDVT-KASL 586 (805)
Q Consensus 570 ~C~a~n~~g~~~~-~~~l 586 (805)
+|.|+|..|.... .+.|
T Consensus 75 ~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 75 QCLAINRCGTVVSREANL 92 (94)
T ss_pred EEEEEcCcCcEEEEEEEE
Confidence 9999999998754 4444
|
Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c |
| >cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=103.00 Aligned_cols=88 Identities=25% Similarity=0.335 Sum_probs=69.2
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCc-EEEEEECCEEccCC--CceEEEee----CCEEEEEEccCCCC-CC
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDL-VVEWFYNGKKLPHG--HRYRTFHD----FGIVILDILYCYEE-NS 566 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~-~v~W~~~g~~l~~~--~~~~~~~~----~~~~~L~i~~v~~~-d~ 566 (805)
||.+ ...... .+.+|+.++|.|.+. |.|.| .|.|+++|+.+... .++.+... +..+.|.|.++..+ |.
T Consensus 2 pp~i-~~~~~~-~~~~G~~v~L~C~~~--g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~ 77 (98)
T cd05758 2 PPII-TSEATQ-YAILGDKGRVECFIF--STPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQ 77 (98)
T ss_pred CCeE-cCCCcE-EEeCCCcEEEEEEEc--ccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccc
Confidence 4444 333443 378999999999999 77888 69999999998653 46766543 23467999999994 58
Q ss_pred EEEEEEEEcCCcceEEEEEE
Q psy2166 567 GVYECRATNKYGSDVTKASL 586 (805)
Q Consensus 567 G~Y~C~a~n~~g~~~~~~~l 586 (805)
|.|+|.|.|..|.....+.|
T Consensus 78 G~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 78 TSYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred eeEEEEEEcCCCcccEEEEe
Confidence 99999999999999888776
|
Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.7e-12 Score=98.35 Aligned_cols=73 Identities=26% Similarity=0.518 Sum_probs=61.0
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEE-CCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFY-NGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
|+.+.|.|.+. |.|.|.+.|++ ++..+....+.....++ .|.|..+..+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 G~~~~l~C~~~--g~P~p~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKAR--GDPEPAIHWISPDGKLISNSSRTLVYDNG---TLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEcc--CcCCCEEEEEeCCCEEecCCCeEEEecCC---EEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 78999999998 78999999997 67777666555444332 4899999999999999999999999988888765
|
Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.2e-12 Score=101.15 Aligned_cols=76 Identities=18% Similarity=0.303 Sum_probs=60.7
Q ss_pred CCeEEEEEEEeecCC--CCeEEEEEECCEEccCCCC----eE-EEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEE
Q psy2166 707 GEIAHFEASLIPVGD--QTMTVEFLYNGKPIEASHR----IR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 779 (805)
Q Consensus 707 G~~~~l~C~~~~~g~--p~~~v~W~~~g~~l~~~~~----~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~ 779 (805)
|+.+.|.|.+. |. |.|.|+|+++++.+..... .. .........|.|.+++.+|+|.|+|.|.|..|..+.+
T Consensus 1 Ge~~~L~C~~~--g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s 78 (84)
T cd05742 1 GETLVLNCTVL--TELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKES 78 (84)
T ss_pred CCeEEEEEEEE--eCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEE
Confidence 78999999999 77 8999999998875543211 11 1111234689999999999999999999999999999
Q ss_pred EEEEE
Q psy2166 780 VNLEC 784 (805)
Q Consensus 780 ~~l~V 784 (805)
+.|.|
T Consensus 79 ~~v~v 83 (84)
T cd05742 79 TKVNI 83 (84)
T ss_pred EEEEE
Confidence 99877
|
Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF |
| >cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.4e-12 Score=98.40 Aligned_cols=71 Identities=28% Similarity=0.437 Sum_probs=58.5
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEcc--CCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcce-EEEEEEEEe
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLP--HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD-VTKASLKCV 589 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~ 589 (805)
++|.|.+. |.|.|.|+|+|++.++. .+.++....+ + .|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus 1 a~l~C~~~--G~P~p~v~W~k~~~~~~~~~~~~~~~~~~-g--~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~ 74 (74)
T cd05738 1 ATMLCAAS--GNPDPEITWFKDFLPVDTTSNGRIKQLRS-G--ALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR 74 (74)
T ss_pred CEEEEEEe--EecCCEEEEEECCEECccCCCCCEEEcCC-c--EEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence 47999999 78999999999999987 4455554332 2 49999999999999999999999985 677888763
|
Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. |
| >cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.3e-12 Score=98.51 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=50.2
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCC--CCeEEEeeCcEEEEEEcCCCC----CCCEEEEEEEEcCCccEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTVHAFGMVVLEILGTKI----EDTGVYTCRATNKWGQAEIS 779 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~--~~~~~~~~~~~~~L~i~~v~~----~d~G~Y~C~a~N~~G~~~~~ 779 (805)
+.|.|.+. |+|.|.|+|+|||.++... .++.+...++ +|.|..+.. .|+|.|+|.|.|.+|...+.
T Consensus 1 ~~l~C~a~--G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g--~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05874 1 IVIQCEAK--GKPPPSFSWTRNGTHFDIDKDPKVTMKPNTG--TLVINIMNGEKAEAYEGVYQCTARNERGAAVSN 72 (77)
T ss_pred CEEEeeCc--ccCCCeEEEEECCeECCCcCCCCEEEeCCCc--eEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence 47999999 9999999999999987543 3444444445 566666653 37899999999999976653
|
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.9e-12 Score=102.39 Aligned_cols=77 Identities=25% Similarity=0.373 Sum_probs=63.4
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEc--------cCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEE
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKL--------PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVT 582 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l--------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 582 (805)
|+.++|.|.+. |.|.|.+.|+|+|..+ ....++.+..++ .|.|.+++.+|+|.|+|.|.|..|....
T Consensus 1 G~~v~L~C~~~--g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~---~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 75 (90)
T cd05726 1 GRTVTFQCEAT--GNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG---DLTITNVQRSDVGYYICQTLNVAGSILT 75 (90)
T ss_pred CCEEEEEEECC--ccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCC---eEEEeeCChhhCEEEEEEEEcCCCceEE
Confidence 78999999998 7899999999998753 123455543322 5999999999999999999999999999
Q ss_pred EEEEEEeeee
Q psy2166 583 KASLKCVSKT 592 (805)
Q Consensus 583 ~~~l~V~~~~ 592 (805)
.+.|.|....
T Consensus 76 ~~~l~V~~~~ 85 (90)
T cd05726 76 KAYLEVTDVI 85 (90)
T ss_pred EEEEEEeecc
Confidence 9999998643
|
Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF) | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.2e-12 Score=98.56 Aligned_cols=66 Identities=26% Similarity=0.285 Sum_probs=51.6
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEcc--CCCCeEEEeeCcEEEEEEcCCC----CCCCEEEEEEEEcCCccEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIE--ASHRIRTVHAFGMVVLEILGTK----IEDTGVYTCRATNKWGQAEIS 779 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~--~~~~~~~~~~~~~~~L~i~~v~----~~d~G~Y~C~a~N~~G~~~~~ 779 (805)
+.|.|.+. |+|.|.|+|+|+|..+. .+.++.+..+.+ +|.|.++. .+|+|.|+|.|.|.+|...+.
T Consensus 1 ~~l~C~~~--G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~--~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAK--GNPVPTFQWTRNGKFFNVAKDPRVSMRRRSG--TLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEecc--ccCCCEEEEEECCEEccCcCCCcEEEeCCCc--eEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 47999999 99999999999999764 345565544444 68887764 357999999999999966554
|
Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. |
| >cd05849 Ig1_Contactin-1 First Ig domain of contactin-1 | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=100.31 Aligned_cols=85 Identities=26% Similarity=0.340 Sum_probs=63.2
Q ss_pred CCceEecCCCcccccC---CCeEEEEEEEeeCCCCCcEEEEEECCEEccC-CCceEEEeeCCEEEEEEccCC-CCCCEEE
Q psy2166 495 APKFITQISDVTQLKE---GQSAHFEARLTPVTDPDLVVEWFYNGKKLPH-GHRYRTFHDFGIVILDILYCY-EENSGVY 569 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~---G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~-~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y 569 (805)
+|.|...+.+.. +.+ |..+.|.|.+. |.|.|.++|+|+|..+.. ..++.+ . ++ .|.|.++. .+|+|.|
T Consensus 1 ~P~f~~~P~~~~-~~~~~~~~~v~l~C~a~--G~P~P~i~W~k~~~~i~~~~~~~~~-~-~g--~L~I~~~~~~~D~G~Y 73 (93)
T cd05849 1 GPVFEEQPIDTI-YPEESTEGKVSVNCRAR--ANPFPIYKWRKNNLDIDLTNDRYSM-V-GG--NLVINNPDKYKDAGRY 73 (93)
T ss_pred CCEEEECCCCEE-ecCCccCCeEEEeCcCc--cCCCCEEEEEECCEEccCCCCeEEE-E-CC--EEEECcCCcCCCCEEE
Confidence 366666665543 433 44899999999 789999999999999853 344433 2 23 58998875 6899999
Q ss_pred EEEEEcCCcceEE-EEEE
Q psy2166 570 ECRATNKYGSDVT-KASL 586 (805)
Q Consensus 570 ~C~a~n~~g~~~~-~~~l 586 (805)
+|.|+|..|.... .+.|
T Consensus 74 ~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 74 VCIVSNIYGKVRSREATL 91 (93)
T ss_pred EEEEEeCcceEEEccEEE
Confidence 9999999998744 4444
|
Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. |
| >cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.4e-12 Score=98.30 Aligned_cols=71 Identities=27% Similarity=0.390 Sum_probs=57.7
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEcc---CCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLP---HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~---~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
++|.|.+. |.|.|+++|+|+|.... ...++.+...++ .|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 a~l~C~~~--G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAAT--GHPTPQIAWQKDGGTDFPAARERRMHVMPEDD--VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecc--cccCCEEEEEeCCCccCCcccccceEEecCCC--EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 47999998 88999999999986432 233444433333 6999999999999999999999999999999987
|
Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Probab=99.32 E-value=8.5e-12 Score=98.55 Aligned_cols=72 Identities=21% Similarity=0.391 Sum_probs=57.2
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCC----CCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEAS----HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~----~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 782 (805)
+.|.|.+. .+.|.+.++|+|+|+.+... .++.+........|.|.++..+|+|.|+|.|.|.+|.+..++.+
T Consensus 1 ~~L~C~a~-~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~~ 76 (76)
T cd05895 1 LVLRCETV-SEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTANV 76 (76)
T ss_pred CEEEEecc-cCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEeC
Confidence 47999987 24688999999999988643 22333343455689999999999999999999999998887753
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process |
| >cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-11 Score=97.88 Aligned_cols=74 Identities=23% Similarity=0.217 Sum_probs=61.3
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEe
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
+.|.|.+. |.|.|.+.|+|+|+.+..+.+......+....|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus 1 ~~L~C~v~--g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAE--GIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEee--ecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 47999999 779999999999999876543333222333469999999999999999999999999999999886
|
Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. |
| >cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.7e-12 Score=96.64 Aligned_cols=69 Identities=30% Similarity=0.467 Sum_probs=58.1
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
++|.|.+. |.|.|.+.|+|++..+..+ ++.+..+ + .|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 v~l~C~~~--g~P~p~v~W~k~~~~~~~~-~~~~~~~-~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVG--GDPVPTVLWRKEDGELPKG-RAEILDD-K--SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECc--cCCCCEEEEEECCccCCCC-cEEEeeC-C--EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 57999998 7899999999998877544 4544422 2 5999999999999999999999999999888875
|
Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni |
| >cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2) | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-11 Score=100.95 Aligned_cols=76 Identities=21% Similarity=0.347 Sum_probs=60.1
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEEC----CEEccCCCc--eEEEee-------CCEEEEEEccCCCCCCEEEEEEEEcCC
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYN----GKKLPHGHR--YRTFHD-------FGIVILDILYCYEENSGVYECRATNKY 577 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~----g~~l~~~~~--~~~~~~-------~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 577 (805)
|+.++|.|.+. |.|.|.|+|+|+ |..+..+.. ..+... .....|.|.+++.+|+|.|+|.|.|..
T Consensus 1 G~~v~L~C~~~--g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd05858 1 GSTVEFVCKVY--SDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSI 78 (90)
T ss_pred CCeEEEEEEEe--cCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCC
Confidence 78999999999 789999999984 555543322 111111 123579999999999999999999999
Q ss_pred cceEEEEEEEE
Q psy2166 578 GSDVTKASLKC 588 (805)
Q Consensus 578 g~~~~~~~l~V 588 (805)
|....++.|.|
T Consensus 79 G~~~~~a~L~V 89 (90)
T cd05858 79 GISHHSAWLTV 89 (90)
T ss_pred CcccceEEEEE
Confidence 99999999987
|
Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination. |
| >cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-11 Score=99.37 Aligned_cols=79 Identities=25% Similarity=0.466 Sum_probs=64.1
Q ss_pred CCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCC-CCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEE
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL-GSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFT 152 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~ 152 (805)
.+..+.+|++++|.|.+.. +.|.+.|.|+|+|..+.. ..++.+..++ +|.|.+++.+|+|.|+|.|.|..|...+
T Consensus 4 ~~~~~~~G~~v~l~C~~~~-g~p~p~i~W~k~g~~~~~~~~~~~~~~~~---~L~I~~~~~~D~G~Y~C~a~N~~G~~~s 79 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPR-GHPEPTVSWRKDGQPLNLDNERVRIVDDG---NLLIAEARKSDEGTYKCVATNMVGERES 79 (86)
T ss_pred ccEEEeCCCCEEEEEECCC-CCCCCEEEEEECCEECCCCCCCEEEccCC---EEEEeECCcccCEEEEEEEEeccCceee
Confidence 4678899999999999831 688999999999999886 4466555433 7999999999999999999999887654
Q ss_pred -EEEE
Q psy2166 153 -STTI 156 (805)
Q Consensus 153 -~~~l 156 (805)
.+.|
T Consensus 80 ~~~~l 84 (86)
T cd05724 80 AAARL 84 (86)
T ss_pred eeEEE
Confidence 3434
|
Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago |
| >cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR) | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.1e-12 Score=101.78 Aligned_cols=77 Identities=21% Similarity=0.363 Sum_probs=59.3
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECC----EEccCC-Cce-EEEe-------eCCEEEEEEccCCCCCCEEEEEEEEcCC
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNG----KKLPHG-HRY-RTFH-------DFGIVILDILYCYEENSGVYECRATNKY 577 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g----~~l~~~-~~~-~~~~-------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 577 (805)
|+.++|.|.+. |.|.|.|+|+|++ ..+... ... .... .+....|.|.+++.+|+|.|+|.|.|..
T Consensus 1 G~~v~l~C~v~--g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 78 (90)
T cd04974 1 GSDVEFHCKVY--SDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSI 78 (90)
T ss_pred CCcEEEEEEEe--CCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeeccc
Confidence 68899999999 8899999999964 333221 111 1111 1233479999999999999999999999
Q ss_pred cceEEEEEEEEe
Q psy2166 578 GSDVTKASLKCV 589 (805)
Q Consensus 578 g~~~~~~~l~V~ 589 (805)
|....++.|.|.
T Consensus 79 G~~~~sa~L~V~ 90 (90)
T cd04974 79 GPSHHSAWLTVL 90 (90)
T ss_pred CcccCCEEEEeC
Confidence 999999999873
|
Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. |
| >cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-11 Score=98.88 Aligned_cols=79 Identities=28% Similarity=0.500 Sum_probs=61.9
Q ss_pred cccCCCeEEEEEEEeeCCCCCcEEEEEE-CCEEccCCCceEEEe-eCCEEEEEEccCCCCCCEEEEEEEEcCCcc-eEEE
Q psy2166 507 QLKEGQSAHFEARLTPVTDPDLVVEWFY-NGKKLPHGHRYRTFH-DFGIVILDILYCYEENSGVYECRATNKYGS-DVTK 583 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~p~~~v~W~~-~g~~l~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~ 583 (805)
.+..|+++.|.|.+. |.|. .++|++ +|..+....++.+.. ....+.|.|.+++.+|+|.|+|.|.|..|. ...+
T Consensus 11 ~v~~G~~~~l~C~~~--G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~s 87 (92)
T cd04977 11 EISVGESKFFLCQVI--GEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEAT 87 (92)
T ss_pred EECCCCeEEEEEEeE--eeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeE
Confidence 389999999999999 5564 999997 777776655555433 345678999999999999999999999754 4666
Q ss_pred EEEEE
Q psy2166 584 ASLKC 588 (805)
Q Consensus 584 ~~l~V 588 (805)
+.|.|
T Consensus 88 v~l~~ 92 (92)
T cd04977 88 VNLKI 92 (92)
T ss_pred EEEEC
Confidence 66643
|
Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s |
| >cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.6e-11 Score=98.65 Aligned_cols=80 Identities=24% Similarity=0.412 Sum_probs=67.5
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEE-eeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTV-HAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
.+..|+.+.|.|.+. |.|.+.+.|+|++..+......... .......|.|.++..+|+|.|+|.|.|..|..+.+++
T Consensus 5 ~~~~G~~~~l~C~~~--~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~ 82 (85)
T cd05729 5 AVPAGSTVRLKCPAS--GNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYK 82 (85)
T ss_pred EecCCCcEEEEEEcC--CCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEE
Confidence 577899999999998 8999999999999988766544322 2233457999999999999999999999999999888
Q ss_pred EEE
Q psy2166 782 LEC 784 (805)
Q Consensus 782 l~V 784 (805)
|.|
T Consensus 83 l~v 85 (85)
T cd05729 83 VDV 85 (85)
T ss_pred EeC
Confidence 875
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin |
| >cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs) | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-11 Score=97.13 Aligned_cols=71 Identities=27% Similarity=0.384 Sum_probs=58.1
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceE---EEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR---TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 585 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~---~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 585 (805)
+.|.|.+.+ +.|.|.++|+|+|+++..+.+.. +........|.|.+++.+|+|.|+|.|.|..|....+++
T Consensus 1 ~~l~C~~~g-~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATS-EYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccC-CCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 479999993 28999999999999997654432 333445678999999999999999999999999887764
|
Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv |
| >cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1) | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.4e-11 Score=99.41 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=63.2
Q ss_pred ccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEE
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 587 (805)
...|++++|.|.+. |.|.|.++|+|+|..+....... .......|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 6 ~~~G~~v~L~C~~~--g~p~p~i~W~k~~~~~~~~~~~~--~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~ 81 (82)
T cd05856 6 RPVGSSVRLKCVAS--GNPRPDITWLKDNKPLTPTEIGE--SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD 81 (82)
T ss_pred ccCCCeEEEEEEee--EeCCCcEEEEECCcCCcCCccce--ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence 67899999999999 67888999999999886543322 122345799999999999999999999999988877775
Q ss_pred E
Q psy2166 588 C 588 (805)
Q Consensus 588 V 588 (805)
|
T Consensus 82 v 82 (82)
T cd05856 82 V 82 (82)
T ss_pred C
Confidence 4
|
Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. |
| >cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-11 Score=100.49 Aligned_cols=83 Identities=23% Similarity=0.321 Sum_probs=62.0
Q ss_pred ecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc--eEEEeeCCEEEEEEccC-----CCCCCEEEEEE
Q psy2166 500 TQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR--YRTFHDFGIVILDILYC-----YEENSGVYECR 572 (805)
Q Consensus 500 ~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~~~~~~~L~i~~v-----~~~d~G~Y~C~ 572 (805)
..+.+.. +.+|+++.|.|.+. |.|.|.|+|+|||..+..... +.+..++. |.|.++ ..+|+|.|+|.
T Consensus 4 ~~P~~~~-~~~g~~v~l~C~v~--g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~---l~i~~v~~~~~~~~D~G~Y~C~ 77 (95)
T cd05722 4 SEPSDIV-AVRGGPVVLNCSAE--GEPPPKIEWKKDGVLLNLVSDERRQQLPNGS---LLITSVVHSKHNKPDEGFYQCV 77 (95)
T ss_pred ECCCCeE-EcCCCCEEEeeecc--cCCCCEEEEEECCeECccccCcceEEccCCe---EEEeeeeccCCCCCcCEEEEEE
Confidence 3344443 77899999999999 778999999999999975433 44333333 455544 57899999999
Q ss_pred EEcC-Ccce-EEEEEEEE
Q psy2166 573 ATNK-YGSD-VTKASLKC 588 (805)
Q Consensus 573 a~n~-~g~~-~~~~~l~V 588 (805)
|.|. .|.. +..+.|+|
T Consensus 78 a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 78 AQNDSLGSIVSRTARLTV 95 (95)
T ss_pred EECCccCcEEEeeeEEeC
Confidence 9999 9987 55666654
|
Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. |
| >cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-11 Score=98.75 Aligned_cols=70 Identities=24% Similarity=0.273 Sum_probs=54.0
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEcc--------CCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccE-EEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIE--------ASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA-EISV 780 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~--------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~ 780 (805)
++|.|.+. |+|.|.|.|+|++.... ...++.... .+ .|.|.++..+|+|.|+|.|.|.+|.+ +.++
T Consensus 1 v~l~C~~~--G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~-~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~ 75 (79)
T cd05734 1 VTLNCSAE--GYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLS-NG--SLLIKHVLEEDSGYYLCKVSNDVGADASKSM 75 (79)
T ss_pred CEeEeeCe--EeCCCEEEEEECCCccccccccccccCCCEEEec-CC--eEEECcCCcccCEEEEEEEEeCCCCCCceEE
Confidence 57999999 99999999999643211 234444322 23 69999999999999999999999966 7777
Q ss_pred EEEE
Q psy2166 781 NLEC 784 (805)
Q Consensus 781 ~l~V 784 (805)
.|+|
T Consensus 76 ~l~~ 79 (79)
T cd05734 76 VLTV 79 (79)
T ss_pred EEeC
Confidence 7765
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs) | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-11 Score=96.20 Aligned_cols=70 Identities=13% Similarity=0.291 Sum_probs=55.4
Q ss_pred cccCCCeEEEEEEEeeCCCCCc-EEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEE-EE
Q psy2166 507 QLKEGQSAHFEARLTPVTDPDL-VVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVT-KA 584 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~ 584 (805)
.+.+|+++.|.|.+. |.|.| +|+|+|||.++... . ....+.|.|..+ .|+|.|+|.|+|..|.... .+
T Consensus 9 ~v~~G~~v~l~C~a~--G~P~P~~I~W~k~g~~l~~~--~----~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a 78 (81)
T cd05749 9 SVTANTPFNLTCQAV--GPPEPVEILWWQGGSPLGDP--P----APSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTG 78 (81)
T ss_pred EEcCCCCEEEEEEee--eecCCeEEEEEECCEECCCC--C----CCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeE
Confidence 489999999999999 88999 79999999998641 1 112236899876 5889999999999997654 44
Q ss_pred EE
Q psy2166 585 SL 586 (805)
Q Consensus 585 ~l 586 (805)
.|
T Consensus 79 ~~ 80 (81)
T cd05749 79 TV 80 (81)
T ss_pred Ee
Confidence 44
|
Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c |
| >cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1) | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-11 Score=93.19 Aligned_cols=68 Identities=21% Similarity=0.221 Sum_probs=54.4
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCC-CceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHG-HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 587 (805)
++|.|.+. |.|.|+++|+|||.++..+ .++. .++. .|.|.+++.+|+|.|+|.|+|..........++
T Consensus 1 ~~l~c~v~--g~P~P~v~W~kdg~~l~~~~~~~~--~~~~--~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 1 YRLTPKVK--AFPAPEVIWLKDGLPAAEKCSRYH--VDGY--SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred CeEEeeEE--EcCCCeEEEEECCEECCCCCcEEE--eCCC--EEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence 47999999 7899999999999998765 3332 2232 599999999999999999999877766655544
|
Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. |
| >cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b) | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.6e-11 Score=97.31 Aligned_cols=76 Identities=22% Similarity=0.358 Sum_probs=56.3
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEccCCC----CeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCc--cEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH----RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG--QAEISV 780 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G--~~~~~~ 780 (805)
|++++|.|.+. |.|.+.+.|++.|+...... +..+......++|.|.+++.+|+|.|+|.|+|..+ ....++
T Consensus 1 Ge~~~l~C~~~--~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv 78 (84)
T cd05861 1 GETITVNCIVQ--GNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKV 78 (84)
T ss_pred CCcEEEEEEEE--CCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEE
Confidence 78999999999 89999999999876432111 11111122356899999999999999999999987 455555
Q ss_pred EEEE
Q psy2166 781 NLEC 784 (805)
Q Consensus 781 ~l~V 784 (805)
.|+|
T Consensus 79 ~i~V 82 (84)
T cd05861 79 NITV 82 (84)
T ss_pred EEEE
Confidence 5554
|
Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development. |
| >cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.6e-11 Score=95.74 Aligned_cols=70 Identities=27% Similarity=0.323 Sum_probs=57.7
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
++|.|.+. |.|.|.++|+|++..+..+ +.... .....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|
T Consensus 1 v~l~C~~~--g~P~p~v~W~k~~~~~~~~-~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAE--GLPTPEISWIKIGGELPAD-RTKFE--NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEee--EecCCeEEEEECCeECCCC-ceeEe--cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 47999999 7788999999999887654 22222 22346999999999999999999999999999888877
|
Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. |
| >cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.6e-11 Score=98.81 Aligned_cols=82 Identities=20% Similarity=0.280 Sum_probs=64.1
Q ss_pred CcccccCCCCeEEEEEEEeecCCCCeEEEEEEC--------CEEccCCCCeEEEee-CcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 699 QHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN--------GKPIEASHRIRTVHA-FGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 699 ~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--------g~~l~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
.+. .+.+|++++|.|.+. +.|.+.|.|++. +.....+.|+.+... .+..+|.|.++..+|+|.|+|.|
T Consensus 5 ~~v-~v~eG~~v~L~C~~~--~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~ 81 (95)
T cd07701 5 QNV-TVVEGGTANLTCRVD--QNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSL 81 (95)
T ss_pred ceE-EEecCCcEEEEEEEe--cCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEe
Confidence 445 899999999999998 999999999863 322334557665333 45578999999999999999999
Q ss_pred EcCCccEEEEEEEEE
Q psy2166 770 TNKWGQAEISVNLEC 784 (805)
Q Consensus 770 ~N~~G~~~~~~~l~V 784 (805)
.+..+ ...+++|+|
T Consensus 82 ~t~~~-~~~~~~l~v 95 (95)
T cd07701 82 FTMPV-KTSKAYLTV 95 (95)
T ss_pred EeecC-ccEEEEEEC
Confidence 99544 477888876
|
Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. |
| >cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.1e-11 Score=95.25 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=56.1
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCC-CCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKW 773 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 773 (805)
|.+. .+.+|+++.|.|.+. .|.+.|.|+|||+++..+ .++.+ .+ + .|.|.+++.+|+|.|+|.|.+..
T Consensus 3 P~~~-~v~~G~~v~L~C~~~---~~~~~i~W~~ng~~i~~~~~r~~~-~~-~--~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 3 PRQR-TFKLGNNAELKCSPK---SNLARVVWKFDGKVLTPESAKYLL-YR-D--GLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred cceE-EEECCCCEEEEEECC---CCCCeEEEEECCEECCCCCceEEE-EC-C--cEEEeCCCHHHCEEEEEEEEecc
Confidence 4455 899999999999974 477899999999999876 44443 33 3 49999999999999999999864
|
Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas |
| >cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.4e-11 Score=97.51 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=62.5
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEE
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 777 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~ 777 (805)
|... .+.+|+.++|.|.+. .+.|.+.|.|++++..+.... ...++ .|.|.+++.+|+|.|.|.|.|..|...
T Consensus 8 p~~~-~v~~G~~v~L~C~~~-~~~~~~~i~W~~~~~~~~~~~----~~~~~--~L~I~~v~~~DsG~Y~C~a~n~~g~~~ 79 (85)
T cd05754 8 PRSQ-EVRPGADVSFICRAK-SKSPAYTLVWTRVGGGLPSRA----MDFNG--ILTIRNVQLSDAGTYVCTGSNMLDTDE 79 (85)
T ss_pred CCce-EEcCCCCEEEEEEcC-CCCCCcEEEEEECCCcCCCcc----cccCC--EEEECCCCHHHCEEEEEEEeccCCeEe
Confidence 3344 789999999999997 136889999999997654321 12233 799999999999999999999999999
Q ss_pred EEEEE
Q psy2166 778 ISVNL 782 (805)
Q Consensus 778 ~~~~l 782 (805)
.+++|
T Consensus 80 ~~~~l 84 (85)
T cd05754 80 ATATL 84 (85)
T ss_pred EEEEE
Confidence 98876
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. |
| >cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1 | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.3e-11 Score=94.51 Aligned_cols=71 Identities=23% Similarity=0.384 Sum_probs=57.0
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCC----CceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHG----HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 585 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~----~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 585 (805)
+.|+|.+.+ +.|.+.++|+|+|+.+... .++.+........|.|.+++.+|+|.|+|.|.|..|..+.+++
T Consensus 1 ~~L~C~a~~-~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVS-EYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEeccc-CCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 479999874 4788899999999998632 2234334445678999999999999999999999999887765
|
Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process |
| >cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.1e-11 Score=99.77 Aligned_cols=77 Identities=26% Similarity=0.365 Sum_probs=62.3
Q ss_pred ccCCCeEEEEEEEeeCC-----CCCcEEEEEECCEEccCC--CceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcce
Q psy2166 508 LKEGQSAHFEARLTPVT-----DPDLVVEWFYNGKKLPHG--HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD 580 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g-----~p~~~v~W~~~g~~l~~~--~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 580 (805)
+.+|+.+.|.|.+. + .|.+.|+|+|+|..+... ...++...++ .|.|.++..+|+|.|+|.++|..|..
T Consensus 11 v~~G~~~~L~C~~~--g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~--~L~I~~~~~~DsG~Y~C~~~N~~g~~ 86 (94)
T cd05756 11 VLEGEPVVIKCPLF--YSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKD--LLWFLPAALEDSGLYTCVVRNSTYCM 86 (94)
T ss_pred EecCCCeEEECCCC--CcccccCCCceEEEEEcCCCCcccccccceeeecCC--eEEEccCCcccCeEEEEEEcCCCccE
Confidence 78999999999998 5 688899999999765321 1222333333 59999999999999999999999999
Q ss_pred EEEEEEEE
Q psy2166 581 VTKASLKC 588 (805)
Q Consensus 581 ~~~~~l~V 588 (805)
+..++|.|
T Consensus 87 ~~~~~L~v 94 (94)
T cd05756 87 KVSISLTV 94 (94)
T ss_pred EEEEEEEC
Confidence 99988875
|
Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily | Back alignment and domain information |
|---|
Probab=99.23 E-value=4e-11 Score=96.35 Aligned_cols=76 Identities=24% Similarity=0.309 Sum_probs=56.8
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCE---Ec--cCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEE
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGK---KL--PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 585 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~---~l--~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 585 (805)
|+.++|.|.+. |.|.|.++|+|++. .+ ................|.|.+++.+|+|.|+|.|.|..|.....+.
T Consensus 1 G~~v~l~C~~~--g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 78 (81)
T cd05765 1 GETASFHCDVT--GRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFP 78 (81)
T ss_pred CCcEEEEeecc--ccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEE
Confidence 78999999998 78999999999732 11 1111000011112346999999999999999999999999999998
Q ss_pred EEE
Q psy2166 586 LKC 588 (805)
Q Consensus 586 l~V 588 (805)
|.|
T Consensus 79 l~v 81 (81)
T cd05765 79 LSV 81 (81)
T ss_pred EeC
Confidence 875
|
Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.6e-11 Score=95.93 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=60.6
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc-----eEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEE
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR-----YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 585 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~-----~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 585 (805)
|+.++|.|.+.+...|.+.|+|+++++.+..... .........+.|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999943238899999998876643211 11111224567999999999999999999999999999998
Q ss_pred EEE
Q psy2166 586 LKC 588 (805)
Q Consensus 586 l~V 588 (805)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 876
|
Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF |
| >cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.4e-11 Score=96.61 Aligned_cols=80 Identities=19% Similarity=0.154 Sum_probs=64.3
Q ss_pred ccCCCCeEEEEEEEeec---CCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEE
Q psy2166 703 NLSEGEIAHFEASLIPV---GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 779 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~---g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~ 779 (805)
.+.+|+.+.|.|..... .+|.|.+.|+|||+++....+.. . .++ .|.|.++..+|+|.|+|.|.|.+|...-.
T Consensus 6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~-~-~~~--~L~I~~v~~~DsG~YtC~~~n~~~~~~~~ 81 (92)
T cd05757 6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF-V-KGS--KLLIQNVTEEDAGNYTCKLTFTHNGKQYN 81 (92)
T ss_pred EEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE-e-cCC--EEEEeeCChhhCEEEEEEEEecCCCEEEE
Confidence 67889999999987510 23678999999999998765443 2 333 79999999999999999999999988877
Q ss_pred EEEEEEE
Q psy2166 780 VNLECVV 786 (805)
Q Consensus 780 ~~l~V~~ 786 (805)
+++++.+
T Consensus 82 ~t~t~~l 88 (92)
T cd05757 82 VTRTISL 88 (92)
T ss_pred EEEEEEE
Confidence 7766654
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1 |
| >TIGR00864 PCC polycystin cation channel protein | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-05 Score=98.12 Aligned_cols=484 Identities=13% Similarity=0.149 Sum_probs=260.8
Q ss_pred eecCCCcEEEEEEEecCCCCCceEEEEECCEecCC-CCceEEEecCcEEEEEEcccccCCCeEEEEEE--EeCCeeEEEE
Q psy2166 77 KLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL-GSRFKTTADFGFVTLDLTEVYDRDQGIYTCRA--WNLAGETFTS 153 (805)
Q Consensus 77 ~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a--~n~~g~~~~~ 153 (805)
.+..+..+.|.-... ......+.|.+.+.-... .... ...+ -...|.|.-.. .|..|....+
T Consensus 1522 ~vpl~~sV~Fta~~s--~Gs~v~ysWdFGDg~ts~~~npt--------~~yT-----Y~spGtYtVtLTvtN~~Gs~~~T 1586 (2740)
T TIGR00864 1522 NVPLNGSVHFEAHLD--AGDDVRFSWILCDHCTPIFGGNT--------IFYT-----FRSVGTFNIIVTAENDVGAAQAS 1586 (2740)
T ss_pred cccccceEEEEEEcc--CCCceeEEEEeCCCCccccCCCc--------eEEe-----ecCCceEEEEEEEecCCCcccee
Confidence 344566788875544 234568999886432111 1110 0111 23468887655 5778888777
Q ss_pred EEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCC
Q psy2166 154 TTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ 233 (805)
Q Consensus 154 ~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p 233 (805)
..+.|+...........+.. .+... ...+.. ..+..+..+.|+-.+. .| .
T Consensus 1587 ~~i~V~~~I~GlqI~~~~~~-------------------------gg~~~--~~~~~~-~~~~t~~~v~l~~~~~-~G-T 1636 (2740)
T TIGR00864 1587 IFLFVLQEIEGLQILGETAE-------------------------GGGGG--VQELDG-CYFETNHTVQFHAGFK-DG-T 1636 (2740)
T ss_pred EEEEEeecccceEEEeeccc-------------------------ccCCc--cccccc-ceeccCCEEEeeeccC-CC-C
Confidence 88888754322111100000 00000 000000 1255667788877663 23 4
Q ss_pred CeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEE--EEcCCeeEEEEEEEEEeccCCCCCCeEEecCC
Q psy2166 234 TMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR--ATNKWGQAEISVNLECVDKSKGQPPKFTSHIK 311 (805)
Q Consensus 234 ~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~--~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~ 311 (805)
...+.|..-+..-+....+ ...+....+ ...+.|.|... +.|..|....+..+.+.+. ...+.....
T Consensus 1637 nvsysW~~~~~n~~dg~~~--~~tGk~~~v-----t~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~ep----i~~L~L~aS 1705 (2740)
T TIGR00864 1637 NLSFSWNAILDNEPDGPAF--AGSGKGAKL-----NPLEAGPCDIFLQAANLLGQATADCTIDFLEP----AGNLMLQAS 1705 (2740)
T ss_pred eeEEEEEEecCCCCCCccc--cccCceeEE-----ecCCCceEEEEEEEeecccceeeEEEEEEEEE----cCceEEecc
Confidence 4677786511100000000 111112223 23567888765 5588888888777777652 233333333
Q ss_pred CcccccCCCeEEEEEEEeecCCCCcEEEEEECCE-EccCCCceEEEEeCcEEEEEEcccCcCCceEEEEE--EEeCceee
Q psy2166 312 SLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGK-PIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCR--AWNKYGED 388 (805)
Q Consensus 312 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~-~l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~--a~n~~g~~ 388 (805)
... +..|+.++|.-... ......+.|..++- .......+ + .-.....|.|... |.|..|..
T Consensus 1706 ~~~-aavn~~V~fs~~lt--~GS~vty~W~~gdG~s~~~s~p~----------~---tHtf~~~G~y~VtVta~N~vss~ 1769 (2740)
T TIGR00864 1706 DNP-AAVNALINLSAELA--EGSGLQYRWFLEEGDDLETSEPF----------M---SHSFPSAGLHLVTMKAFNELGSA 1769 (2740)
T ss_pred CCc-ccCCCeEEEEEEec--CCCCcEEEEEECCCCCcccCCCc----------e---EEEccCCceEEEEEEEEcccccc
Confidence 333 67799999988776 67778999987652 21111110 0 0124567888555 55888888
Q ss_pred EEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCC
Q psy2166 389 FTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPD 468 (805)
Q Consensus 389 ~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (805)
..+..+.|+++..
T Consensus 1770 ~~s~~V~VqepV~------------------------------------------------------------------- 1782 (2740)
T TIGR00864 1770 NASEEVDVQEPIS------------------------------------------------------------------- 1782 (2740)
T ss_pred ceeEEEEEEeccc-------------------------------------------------------------------
Confidence 8777777765421
Q ss_pred ceEEEeecccCCCCCCcccccCCCCCCCceEecCC-CcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEE
Q psy2166 469 LVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQIS-DVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT 547 (805)
Q Consensus 469 ~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~ 547 (805)
...|..... ....+..|..+.|.-.+.. |.+ ..+.|..+|..-..+
T Consensus 1783 --------------------------GL~i~~~~~~~~~~~~ag~~v~F~a~vst-Gsn-Vsw~W~f~~g~s~~g----- 1829 (2740)
T TIGR00864 1783 --------------------------GLKIRAADAGEQNFFAADSSVCFQGELAT-GTN-VSWCWAIDGGSSKMG----- 1829 (2740)
T ss_pred --------------------------cceEecCCCCcccceecCcEEEEEEEccC-CCe-eEEEEEeCCCCcccc-----
Confidence 111111111 1112557888888888763 544 388888775421111
Q ss_pred EeeCCEEEEEEccCCCCCCEEEEE--EEEcCCcceEEEEEEEEeeeee-eeecC--------------------CCCeEE
Q psy2166 548 FHDFGIVILDILYCYEENSGVYEC--RATNKYGSDVTKASLKCVSKTN-LILES--------------------QLPEVE 604 (805)
Q Consensus 548 ~~~~~~~~L~i~~v~~~d~G~Y~C--~a~n~~g~~~~~~~l~V~~~~~-~~~~~--------------------~~p~v~ 604 (805)
.... .+..++|.|+. .|.|..+....+.++.|+.+.. +.+.. +.-.+.
T Consensus 1830 ----k~v~-----~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~ 1900 (2740)
T TIGR00864 1830 ----KHAC-----MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFR 1900 (2740)
T ss_pred ----ceeE-----EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEE
Confidence 1111 24578999965 6679999988888888877652 22211 112556
Q ss_pred EEEC-CEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCC
Q psy2166 605 WFYN-GKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGV 683 (805)
Q Consensus 605 W~~~-g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~ 683 (805)
|... |.+.. ...+.. + ...-.+-........|+|..+...+...+.|.++-.
T Consensus 1901 w~fGdgs~~~-------~t~~~t--~-~HsY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~----------------- 1953 (2740)
T TIGR00864 1901 LQIGGAAPEV-------LQPGPR--F-SHSFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVR----------------- 1953 (2740)
T ss_pred EEeCCCCcee-------ecCCCe--E-EeecCCCCcEEEEEEEEeccceeeeeEEEEEEEecc-----------------
Confidence 6553 22111 001111 0 111223334444678899999988888888876311
Q ss_pred CCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCE
Q psy2166 684 PDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 684 ~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G 763 (805)
-+.+...-...+..|+..+|...+. .|.| ..+.|++.-+.+..+..+ ...+...+..+ ...|
T Consensus 1954 ---------gL~I~~~c~~~~~~g~~~tF~A~v~-~g~~-V~f~W~f~~~~~~g~~~~--~~~G~~vty~~-----~~~G 2015 (2740)
T TIGR00864 1954 ---------GLQIPDCCAAGIATGEEKNFTANVQ-RGKP-VAFAWTFDLHHLHGDSLV--IHMGKDVSYTA-----EAAG 2015 (2740)
T ss_pred ---------ceEecCCcccceecCceEEEEEEEe-cCCc-eEEEEEeeecccCCCcce--eecCCceEEcc-----CCCc
Confidence 1111111110267899999999997 3554 469999876655544432 22233223333 3689
Q ss_pred EEEEE--EEcCCccEEEEEEEEEEE
Q psy2166 764 VYTCR--ATNKWGQAEISVNLECVV 786 (805)
Q Consensus 764 ~Y~C~--a~N~~G~~~~~~~l~V~~ 786 (805)
.|+.. |.|.+|....+..+.|+.
T Consensus 2016 ~~~I~v~A~N~l~s~n~t~~i~VQ~ 2040 (2740)
T TIGR00864 2016 LLEIQLGAFNALGAENITLQLEAQD 2040 (2740)
T ss_pred EEEEEEEEEcccCcccccEEEEEEe
Confidence 99865 889999887766666654
|
Note: this model has been restricted to the amino half because for technical reasons. |
| >cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.9e-11 Score=95.97 Aligned_cols=78 Identities=24% Similarity=0.354 Sum_probs=60.9
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCC--CeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCc-cEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH--RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG-QAEIS 779 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G-~~~~~ 779 (805)
.+.+|+++.|.|.+. + |.+.+.|+|++..+.... ..++....+ .|.|.++..+|+|.|+|.|.|..+ ....+
T Consensus 7 ~v~~g~~v~L~C~~~--~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~ 81 (89)
T cd04979 7 TVVEGNSVFLECSPK--S-NLASVVWLFQGGPLQRKEEPEERLLVTED--GLLIRSVSPADAGVYTCQSVEHGFKQTLAT 81 (89)
T ss_pred EEECCCcEEEEEeCC--C-CCceEEEEECCcccccccCcCceEEEcCC--CEEEccCCHHHCEEEEEEEecCccceeEeE
Confidence 789999999999987 6 888999999998776653 122222222 499999999999999999997654 66667
Q ss_pred EEEEEE
Q psy2166 780 VNLECV 785 (805)
Q Consensus 780 ~~l~V~ 785 (805)
.+|.|.
T Consensus 82 ~~l~V~ 87 (89)
T cd04979 82 YSLNVL 87 (89)
T ss_pred EEEEEe
Confidence 777775
|
Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. |
| >cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-10 Score=94.11 Aligned_cols=79 Identities=13% Similarity=0.263 Sum_probs=59.9
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEc--------cCCCCeEEEee-CcEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI--------EASHRIRTVHA-FGMVVLEILGTKIEDTGVYTCRATNKW 773 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l--------~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 773 (805)
++.+|+++.|.|.+. |.|.|.|.|+|++..+ ..+.++.+... .+...|.|.++..+|+|.|+|.|.. .
T Consensus 8 tv~~G~tv~L~C~v~--g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t-~ 84 (95)
T cd05882 8 TVAVGGTVTLKCGVK--EHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT-M 84 (95)
T ss_pred EEecCCcEEEEEEEe--CCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe-e
Confidence 899999999999999 9999999999877532 23455554333 3457999999999999999999988 2
Q ss_pred ccEEEEEEEEE
Q psy2166 774 GQAEISVNLEC 784 (805)
Q Consensus 774 G~~~~~~~l~V 784 (805)
-.....++|+|
T Consensus 85 ~~~~~~~~~~v 95 (95)
T cd05882 85 PVRTAKATVTV 95 (95)
T ss_pred ccccEEEEEEC
Confidence 24444444443
|
Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format |
| >cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.9e-11 Score=93.27 Aligned_cols=65 Identities=25% Similarity=0.405 Sum_probs=50.0
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCC--CceEEEeeCCEEEEEEccCC----CCCCEEEEEEEEcCCcceEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHG--HRYRTFHDFGIVILDILYCY----EENSGVYECRATNKYGSDVT 582 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~--~~~~~~~~~~~~~L~i~~v~----~~d~G~Y~C~a~n~~g~~~~ 582 (805)
++|.|.+. |.|.|+|+|+|||..+... .++.+....+ .|.|..+. .+|+|.|+|.|.|..|....
T Consensus 1 i~l~C~~~--G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g--~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05733 1 IVIKCEAK--GNPPPTFSWTRNGTHFDPEKDPRVTMKPDSG--TLVIDNMNGGRAEDYEGEYQCYASNELGTAIS 71 (77)
T ss_pred CEEEeeCc--ccCCCeEEEEECCeECCCCCCCCEEEeCCCC--EEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence 47999999 7899999999999998543 3444333333 57777764 37899999999999998654
|
Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. |
| >cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule) | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-10 Score=91.19 Aligned_cols=65 Identities=23% Similarity=0.362 Sum_probs=48.9
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccC--CCceEEEeeCCEEEEEEccCCC----CCCEEEEEEEEcCCcceEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPH--GHRYRTFHDFGIVILDILYCYE----ENSGVYECRATNKYGSDVT 582 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~--~~~~~~~~~~~~~~L~i~~v~~----~d~G~Y~C~a~n~~g~~~~ 582 (805)
+.|.|.+. |.|.|+|+|+|||.++.. ..++.+...++ .|.|..+.. .|.|.|+|.|.|..|....
T Consensus 1 ~~l~C~a~--G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g--~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAK--GKPPPSFSWTRNGTHFDIDKDPKVTMKPNTG--TLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCc--ccCCCeEEEEECCeECCCcCCCCEEEeCCCc--eEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 57999999 889999999999998743 33444333344 466665553 3789999999999998654
|
Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. |
| >cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.4e-10 Score=98.82 Aligned_cols=117 Identities=19% Similarity=0.288 Sum_probs=82.0
Q ss_pred EEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCC-cEEEE
Q psy2166 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE-LKVEW 340 (805)
Q Consensus 262 ~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~-~~v~W 340 (805)
+|.|.+++.+|+|.|.|.+.+..+..+..+.|.|. .+|.+...+.... ..+|..++|.|.+.+ ..|. +.|.|
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~-----~~P~v~~~~~~~~-~~~~~~~~L~C~a~g-~~P~~~~i~W 74 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVS-----EPPRVRLSLEKLV-SMIEEPQTLICHIAG-YYPLDVQVEW 74 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEe-----cCCceEEeCCCce-eecCCcEEEEEEECC-CCCCCeEEEE
Confidence 69999999999999999999988888888888886 5667665555433 447899999999984 3454 68999
Q ss_pred EECCEEccC----CCce-----EEEEeC---cEEEEEEcccCcCCceEEEEEEEeCc
Q psy2166 341 FHNGKPIFH----KNRV-----KMVSDF---GFVVMDIAYVQSHDSGEYVCRAWNKY 385 (805)
Q Consensus 341 ~~~g~~l~~----~~~~-----~~~~~~---~~~~l~i~~v~~~d~G~Y~C~a~n~~ 385 (805)
+++|..... .... ....++ ....|.+..-..++.+.|+|.+.+..
T Consensus 75 ~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 75 TREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS 131 (139)
T ss_pred EECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence 999854221 0111 111111 11346666555556779999998764
|
IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal. |
| >cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b) | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-10 Score=91.70 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=57.8
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCCC----ceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCc--ceEEEE
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGH----RYRTFHDFGIVILDILYCYEENSGVYECRATNKYG--SDVTKA 584 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g--~~~~~~ 584 (805)
|++++|.|.+. +.|.+.+.|+++|+...... +..+......+.|.|.+++.+|+|.|+|.|.|..+ ....++
T Consensus 1 Ge~~~l~C~~~--~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv 78 (84)
T cd05861 1 GETITVNCIVQ--GNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKV 78 (84)
T ss_pred CCcEEEEEEEE--CCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEE
Confidence 78999999999 67889999999886542211 11111122356899999999999999999999877 566667
Q ss_pred EEEEe
Q psy2166 585 SLKCV 589 (805)
Q Consensus 585 ~l~V~ 589 (805)
+|+|.
T Consensus 79 ~i~V~ 83 (84)
T cd05861 79 NITVH 83 (84)
T ss_pred EEEEe
Confidence 77664
|
Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development. |
| >cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2) | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.4e-10 Score=91.57 Aligned_cols=89 Identities=20% Similarity=0.293 Sum_probs=69.2
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccC--CCceEEEee----CCEEEEEEccCCCCC-CE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPH--GHRYRTFHD----FGIVILDILYCYEEN-SG 567 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~--~~~~~~~~~----~~~~~L~i~~v~~~d-~G 567 (805)
||.+ ...... .+.+|++++|.|.+.+ .+++..|.|.+++..|.. ..++.+... +..+.|.|.++...| .|
T Consensus 2 pP~i-~~~~s~-~~~~G~~~~L~C~~~s-~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g 78 (98)
T cd05898 2 PPII-SSEQVQ-YAVRGERGKVKCFIGS-TPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQT 78 (98)
T ss_pred CCEE-ecCceE-EEeCCCcEEEEEEEcc-CCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCc
Confidence 4444 333333 4899999999999974 445557899999888754 357777554 468899999998767 79
Q ss_pred EEEEEEEcCCcceEEEEEE
Q psy2166 568 VYECRATNKYGSDVTKASL 586 (805)
Q Consensus 568 ~Y~C~a~n~~g~~~~~~~l 586 (805)
.|.|.|.|..|.+...+.|
T Consensus 79 ~Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 79 HYNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEEEeCCccceEEEEe
Confidence 9999999999999888776
|
Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm. |
| >cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.9e-10 Score=90.44 Aligned_cols=66 Identities=17% Similarity=0.266 Sum_probs=55.8
Q ss_pred CCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCC-CceEEEecCcEEEEEEcccccCCCeEEEEEEEeC
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG-SRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNL 146 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 146 (805)
.+..+..|+++.|.|.+. .+.+.|.|++||.+|..+ .++.+.. + .|.|.+++.+|+|.|+|.|.+.
T Consensus 4 ~~~~v~~G~~v~L~C~~~---~~~~~i~W~~ng~~i~~~~~r~~~~~-~---~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 4 RQRTFKLGNNAELKCSPK---SNLARVVWKFDGKVLTPESAKYLLYR-D---GLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred ceEEEECCCCEEEEEECC---CCCCeEEEEECCEECCCCCceEEEEC-C---cEEEeCCCHHHCEEEEEEEEec
Confidence 367889999999999975 467899999999999876 4665543 3 5999999999999999999876
|
Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas |
| >TIGR00864 PCC polycystin cation channel protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-05 Score=98.24 Aligned_cols=468 Identities=15% Similarity=0.122 Sum_probs=258.6
Q ss_pred eecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEE--EEeCCeeEEEEE
Q psy2166 77 KLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCR--AWNLAGETFTST 154 (805)
Q Consensus 77 ~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~--a~n~~g~~~~~~ 154 (805)
.+..|..+.|.-.+. ......+.|..-+..-..+.-+ ...+....++ ..+.|.|... |.|..|....+.
T Consensus 1619 ~~~t~~~v~l~~~~~--~GTnvsysW~~~~~n~~dg~~~--~~tGk~~~vt-----~~~pG~Y~VtL~aSN~vG~~t~s~ 1689 (2740)
T TIGR00864 1619 YFETNHTVQFHAGFK--DGTNLSFSWNAILDNEPDGPAF--AGSGKGAKLN-----PLEAGPCDIFLQAANLLGQATADC 1689 (2740)
T ss_pred eeccCCEEEeeeccC--CCCeeEEEEEEecCCCCCCccc--cccCceeEEe-----cCCCceEEEEEEEeecccceeeEE
Confidence 344566677776655 3556678886611100000001 1122222333 3677888665 468888888888
Q ss_pred EEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCCC
Q psy2166 155 TIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQT 234 (805)
Q Consensus 155 ~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~ 234 (805)
+++|..+..-+ ....... .+..|+.++|.-.. .....
T Consensus 1690 ~i~v~epi~~L----------------------------------------~L~aS~~-~aavn~~V~fs~~l--t~GS~ 1726 (2740)
T TIGR00864 1690 TIDFLEPAGNL----------------------------------------MLQASDN-PAAVNALINLSAEL--AEGSG 1726 (2740)
T ss_pred EEEEEEEcCce----------------------------------------EEeccCC-cccCCCeEEEEEEe--cCCCC
Confidence 88876542211 1111111 25678899998866 45556
Q ss_pred eEEEEEECCEE-ccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEE--EEcCCeeEEEEEEEEEeccCCCCCCeEEecCC
Q psy2166 235 MTVEFLYNGKP-IEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR--ATNKWGQAEISVNLECVDKSKGQPPKFTSHIK 311 (805)
Q Consensus 235 ~~i~W~k~g~~-l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~--~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~ 311 (805)
..++|...+.. ...... ... -+....|.|... |.|..+....+..+.|.+... ...+.....
T Consensus 1727 vty~W~~gdG~s~~~s~p-~~t------------Htf~~~G~y~VtVta~N~vss~~~s~~V~VqepV~--GL~i~~~~~ 1791 (2740)
T TIGR00864 1727 LQYRWFLEEGDDLETSEP-FMS------------HSFPSAGLHLVTMKAFNELGSANASEEVDVQEPIS--GLKIRAADA 1791 (2740)
T ss_pred cEEEEEECCCCCcccCCC-ceE------------EEccCCceEEEEEEEEccccccceeEEEEEEeccc--cceEecCCC
Confidence 89999875531 111111 000 023457888765 558888777777777765331 122222211
Q ss_pred -CcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCcEEEEEEcccCcCCceEEEEE--EEeCceee
Q psy2166 312 -SLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCR--AWNKYGED 388 (805)
Q Consensus 312 -~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~--a~n~~g~~ 388 (805)
....+..|..+.|.-.++ ...+..+.|..++..-.. +.... ....+.|.|+-. |.|..+..
T Consensus 1792 ~~~~~~~ag~~v~F~a~vs--tGsnVsw~W~f~~g~s~~---------gk~v~-----~Tf~~aG~ytV~L~AsN~vs~~ 1855 (2740)
T TIGR00864 1792 GEQNFFAADSSVCFQGELA--TGTNVSWCWAIDGGSSKM---------GKHAC-----MTFPDAGTFAIRLNASNAVSGK 1855 (2740)
T ss_pred CcccceecCcEEEEEEEcc--CCCeeEEEEEeCCCCccc---------cceeE-----EecCCCeEEEEEEEEEcccCcc
Confidence 111255688888888765 344457888776432111 11111 346689988655 66888888
Q ss_pred EEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCC
Q psy2166 389 FTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPD 468 (805)
Q Consensus 389 ~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (805)
..+..+.|+++...
T Consensus 1856 ~~s~~~~VQe~I~~------------------------------------------------------------------ 1869 (2740)
T TIGR00864 1856 SASREFFAEEPIFG------------------------------------------------------------------ 1869 (2740)
T ss_pred eeeeeEEEEEecce------------------------------------------------------------------
Confidence 88888888654311
Q ss_pred ceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEEC-CEEcc--CCCce
Q psy2166 469 LVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYN-GKKLP--HGHRY 545 (805)
Q Consensus 469 ~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~-g~~l~--~~~~~ 545 (805)
+...... ..+..|+.++|.+.+. .-+...+.|... |.+.. .+.++
T Consensus 1870 -----------------------------L~L~as~-~~~~~n~~v~fsa~l~--~GS~Vtf~w~fGdgs~~~~t~~~t~ 1917 (2740)
T TIGR00864 1870 -----------------------------LELKASK-KIAAIGEKVEFQILLA--AGSAVNFRLQIGGAAPEVLQPGPRF 1917 (2740)
T ss_pred -----------------------------EEEeccc-ccccCCCEEEEEEEec--CCCceEEEEEeCCCCceeecCCCeE
Confidence 1111111 1277899999999998 445789999865 33321 11111
Q ss_pred EEEeeCCEEEEEEccCCCCCCEEE--EEEEEcCCcceEEEEEEEEeeee-eee--ecC-------------------CCC
Q psy2166 546 RTFHDFGIVILDILYCYEENSGVY--ECRATNKYGSDVTKASLKCVSKT-NLI--LES-------------------QLP 601 (805)
Q Consensus 546 ~~~~~~~~~~L~i~~v~~~d~G~Y--~C~a~n~~g~~~~~~~l~V~~~~-~~~--~~~-------------------~~p 601 (805)
. . ...--|.| +..|.|..+.......+.|..+- .+. ..| ..-
T Consensus 1918 ~------------H--sY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V 1983 (2740)
T TIGR00864 1918 S------------H--SFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRGKPV 1983 (2740)
T ss_pred E------------e--ecCCCCcEEEEEEEEeccceeeeeEEEEEEEeccceEecCCcccceecCceEEEEEEEecCCce
Confidence 1 1 12234555 45666888776666666554431 110 001 111
Q ss_pred eEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEE--EEEEeCCcceEEEEEEEEeeccccccccccccccCC
Q psy2166 602 EVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYE--CRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQ 679 (805)
Q Consensus 602 ~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~--C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~ 679 (805)
.+.|+..-+.+..+..+... +...+.. ....|.|. .+|.|..|.......+.|+.+...
T Consensus 1984 ~f~W~f~~~~~~g~~~~~~~--G~~vty~-----~~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i~~------------ 2044 (2740)
T TIGR00864 1984 AFAWTFDLHHLHGDSLVIHM--GKDVSYT-----AEAAGLLEIQLGAFNALGAENITLQLEAQDALMD------------ 2044 (2740)
T ss_pred EEEEEeeecccCCCcceeec--CCceEEc-----cCCCcEEEEEEEEEcccCcccccEEEEEEeheee------------
Confidence 67887653333333322111 1111122 24678776 468899999887777888753211
Q ss_pred CCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCC-CeEEEEEEC-CEEccCCCCeEEEeeCcEEEEEEcCC
Q psy2166 680 PAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ-TMTVEFLYN-GKPIEASHRIRTVHAFGMVVLEILGT 757 (805)
Q Consensus 680 ~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p-~~~v~W~~~-g~~l~~~~~~~~~~~~~~~~L~i~~v 757 (805)
-.+...+. ....|..+.|+|.+. ..+ ...+.|-++ |......+..++.+.
T Consensus 2045 ------------~~L~~~p~---~~~~n~~v~f~~~~~--~~~~~v~~~WDFGDGt~~~~T~~~~~sHt----------- 2096 (2740)
T TIGR00864 2045 ------------AALQAGPQ---DCFTNKMAQFEAATS--PKPNFMACHWDFGDGSAGQDTDEPRAEHE----------- 2096 (2740)
T ss_pred ------------EEEeecCc---ceecCceEEEEEEEc--cCCCcEEEEEEecCCCCccccCCceeEEE-----------
Confidence 11111222 456688999999997 334 468999985 555443322222111
Q ss_pred CCCCCEEEEEE--EEcCCccEEEEEEEEEEEe
Q psy2166 758 KIEDTGVYTCR--ATNKWGQAEISVNLECVVW 787 (805)
Q Consensus 758 ~~~d~G~Y~C~--a~N~~G~~~~~~~l~V~~~ 787 (805)
....|.|... |.|.+......+++.|++.
T Consensus 2097 -Y~r~G~Y~V~V~a~N~VS~~~a~~~i~V~vl 2127 (2740)
T TIGR00864 2097 -YLHPGDYRVQVNASNLVSFFSAHAEINVQVL 2127 (2740)
T ss_pred -ecCCccEEEEEEEEcceeeeeeEEEEEEEEe
Confidence 1145888765 7899998888888888775
|
Note: this model has been restricted to the amino half because for technical reasons. |
| >cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.4e-10 Score=93.06 Aligned_cols=84 Identities=17% Similarity=0.330 Sum_probs=62.4
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEECC--------EecCCCCceEEEec-CcEEEEEEcccccCCCeEEEEE
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG--------KPLELGSRFKTTAD-FGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g--------~~i~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
+..++.+.+|++++|.|.+. +.|.+.|.|++.+ .....++|+.+..+ ....+|.|.+++.+|+|.|+|.
T Consensus 3 ~~~~v~v~eG~~v~L~C~~~--~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~ 80 (95)
T cd07701 3 LTQNVTVVEGGTANLTCRVD--QNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCS 80 (95)
T ss_pred ccceEEEecCCcEEEEEEEe--cCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEE
Confidence 34478999999999999998 6788899998632 22334567776433 3557899999999999999999
Q ss_pred EEeCCeeEEEEEEEEE
Q psy2166 143 AWNLAGETFTSTTIYC 158 (805)
Q Consensus 143 a~n~~g~~~~~~~l~V 158 (805)
+....+ ....+.|+|
T Consensus 81 ~~t~~~-~~~~~~l~v 95 (95)
T cd07701 81 LFTMPV-KTSKAYLTV 95 (95)
T ss_pred eEeecC-ccEEEEEEC
Confidence 987432 244555543
|
Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. |
| >cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF) | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.7e-10 Score=89.62 Aligned_cols=66 Identities=26% Similarity=0.403 Sum_probs=50.5
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEcc--CCCceEEEeeCCEEEEEEccCC----CCCCEEEEEEEEcCCcceEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLP--HGHRYRTFHDFGIVILDILYCY----EENSGVYECRATNKYGSDVTK 583 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~--~~~~~~~~~~~~~~~L~i~~v~----~~d~G~Y~C~a~n~~g~~~~~ 583 (805)
+.|.|.+. |.|.|.|+|+|+|+.+. .+.++.+...++ .|.|..+. .+|+|.|+|.|.|..|.....
T Consensus 1 ~~l~C~~~--G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~--~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~ 72 (77)
T cd05875 1 IIIECEAK--GNPVPTFQWTRNGKFFNVAKDPRVSMRRRSG--TLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN 72 (77)
T ss_pred CEEEEecc--ccCCCEEEEEECCEEccCcCCCcEEEeCCCc--eEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence 47999999 88999999999999864 445565543343 57787653 246999999999999987543
|
Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. |
| >cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.3e-11 Score=94.52 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=58.3
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEc--cCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI--EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 776 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l--~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 776 (805)
.+.+|+.+.|.|..- .|.|.+.+.|++++.++ ..+.+..+....| .|.|.+|+.+|+|.|+|.|+|.++..
T Consensus 14 ~v~eG~~~~L~C~pP-~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G--~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 14 KVKEGWGVVLFCDPP-PHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNG--NLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred eeeeCCcEEEeeCCC-CCCCCCEEEEEECCcccccccCCCeEEeCCCC--cEEEeecCHhhCceeEEEEEecccCC
Confidence 789999999999875 58999999999999764 3344444454445 69999999999999999999987654
|
Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >cd04967 Ig1_Contactin First Ig domain of contactin | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.4e-10 Score=91.71 Aligned_cols=80 Identities=24% Similarity=0.476 Sum_probs=60.0
Q ss_pred CeEEecCCCCceec---CCCcEEEEEEEecCCCCCceEEEEECCEecCCC--CceEEEecCcEEEEEEcccc-cCCCeEE
Q psy2166 66 PVFIVPLKPEFKLG---EAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG--SRFKTTADFGFVTLDLTEVY-DRDQGIY 139 (805)
Q Consensus 66 p~~~~~~~~~~~v~---~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~--~~~~~~~~~~~~~L~I~~~~-~~D~G~Y 139 (805)
|.|...+. ++.+. .|+.++|.|.+. |+|.+.|+|+|++..+... .++.+. ++ .|.|.++. .+|+|.|
T Consensus 2 P~f~~~p~-~~~~~~~~~~~~~~l~C~~~--g~p~p~i~W~k~~~~l~~~~~~~~~~~--~~--~L~i~~~~~~~d~G~Y 74 (91)
T cd04967 2 PVFEEQPD-DTIFPEESDEGKVSLNCRAR--GSPPPTYRWLMNGTEIDDEPDSRYSLV--GG--NLVISNPSKAKDAGRY 74 (91)
T ss_pred CeeEeCCC-CEEccCCCCCCEEEEEEeee--EcCCCEEEEEECCEECCCCCCCCEEEE--CC--EEEEecCCccCCCEEE
Confidence 56666554 44443 346799999998 6899999999999988533 344432 22 68898887 4999999
Q ss_pred EEEEEeCCeeEEE
Q psy2166 140 TCRAWNLAGETFT 152 (805)
Q Consensus 140 ~C~a~n~~g~~~~ 152 (805)
+|.|.|..|...+
T Consensus 75 ~C~a~N~~G~~~S 87 (91)
T cd04967 75 QCLASNIVGTVLS 87 (91)
T ss_pred EEEEEcCCCEEEe
Confidence 9999999987655
|
Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata |
| >cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.1e-10 Score=89.98 Aligned_cols=66 Identities=23% Similarity=0.357 Sum_probs=51.6
Q ss_pred eEEecCCCCceecCCCcEEEEEEEecCCCCC-ceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEe
Q psy2166 67 VFIVPLKPEFKLGEAQPLHLEAQVEPKNDPN-LKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWN 145 (805)
Q Consensus 67 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 145 (805)
.+.+.+ +...+.+|+.++|+|.+. +.|. ..+.|+|||..+... + .+|.|.++ .+|+|.|+|.|.+
T Consensus 2 vv~~~P-~~~~v~~G~~V~L~C~~~--~~p~~~~~~W~kng~~l~~~--------~--~~l~i~~~-~~dsG~Y~C~a~~ 67 (78)
T cd05752 2 VVSLDP-PWTTIFQGEKVTLTCNGF--NSPEQNSTQWYHNGKLLETT--------T--NSYRIRAA-NNDSGEYRCQTQG 67 (78)
T ss_pred eEEeCC-CCeEeeCCCCEEEEEeCC--CCCCCccEEEEECCEEeecc--------C--CeEEEeec-ccCCEEeEEECCC
Confidence 344443 367899999999999998 4554 469999999987321 1 26899999 9999999999987
Q ss_pred C
Q psy2166 146 L 146 (805)
Q Consensus 146 ~ 146 (805)
.
T Consensus 68 ~ 68 (78)
T cd05752 68 S 68 (78)
T ss_pred C
Confidence 5
|
Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.13 E-value=2e-10 Score=91.75 Aligned_cols=64 Identities=22% Similarity=0.252 Sum_probs=53.3
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
.+.+|+.++|.|.+. .+.|.+.+.|+|+|+.+.... ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 10 ~V~~G~~vtL~C~~~-~~~~~~~~~w~k~g~~~~~~~--------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~ 73 (83)
T cd05753 10 VVFEGEPLVLRCHGW-KNKPVYKVTYYRDGKAKKYSH--------SNSNLSIPQATLSDSGSYHCSGIIGSYD 73 (83)
T ss_pred eecCCCCEEEEeeCC-CCCcceEEEEEECCeEccccC--------CCceEEECccCHHHCEEEEEEEEeCCce
Confidence 689999999999985 246778999999998775321 2237999999999999999999999983
|
Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.5e-10 Score=90.90 Aligned_cols=82 Identities=16% Similarity=0.220 Sum_probs=65.0
Q ss_pred EEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCC
Q psy2166 68 FIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLA 147 (805)
Q Consensus 68 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 147 (805)
+.+..+..+.+.+|+.++|.|.+.+ +.|.+.+.|++++..+.... .. .+ ..|.|.+++.+|+|.|+|.|.|..
T Consensus 3 ~~~~~p~~~~v~~G~~v~L~C~~~~-~~~~~~i~W~~~~~~~~~~~---~~-~~--~~L~I~~v~~~DsG~Y~C~a~n~~ 75 (85)
T cd05754 3 VTVEEPRSQEVRPGADVSFICRAKS-KSPAYTLVWTRVGGGLPSRA---MD-FN--GILTIRNVQLSDAGTYVCTGSNML 75 (85)
T ss_pred EEecCCCceEEcCCCCEEEEEEcCC-CCCCcEEEEEECCCcCCCcc---cc-cC--CEEEECCCCHHHCEEEEEEEeccC
Confidence 3455666789999999999999873 36788999999987764321 11 11 279999999999999999999999
Q ss_pred eeEEEEEEE
Q psy2166 148 GETFTSTTI 156 (805)
Q Consensus 148 g~~~~~~~l 156 (805)
|.....+.|
T Consensus 76 g~~~~~~~l 84 (85)
T cd05754 76 DTDEATATL 84 (85)
T ss_pred CeEeEEEEE
Confidence 988887765
|
Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. |
| >cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins | Back alignment and domain information |
|---|
Probab=99.12 E-value=8.5e-10 Score=89.69 Aligned_cols=79 Identities=22% Similarity=0.384 Sum_probs=64.7
Q ss_pred ccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEE-eeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEE
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTF-HDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 586 (805)
+..|+.++|.|.+. +.|.+.+.|+|++..+......... .......|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus 6 ~~~G~~~~l~C~~~--~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l 83 (85)
T cd05729 6 VPAGSTVRLKCPAS--GNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV 83 (85)
T ss_pred ecCCCcEEEEEEcC--CCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence 67899999999998 6788899999999988755443322 22334579999999999999999999999998888877
Q ss_pred EE
Q psy2166 587 KC 588 (805)
Q Consensus 587 ~V 588 (805)
.|
T Consensus 84 ~v 85 (85)
T cd05729 84 DV 85 (85)
T ss_pred eC
Confidence 64
|
Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin |
| >cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.3e-10 Score=91.88 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=57.5
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEc-c-------------CCCCeEEEe---eCcEEEEEEcCCCCCCCEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI-E-------------ASHRIRTVH---AFGMVVLEILGTKIEDTGVY 765 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l-~-------------~~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y 765 (805)
.+.+|++|+|.|.+. +.|.+.|.|+++++.. . ..+|+.... +.+.+.|+|.+++.+|+|.|
T Consensus 3 ~~~~G~~VtL~C~~s--~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY 80 (94)
T cd07690 3 LGKKGDTAELPCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY 80 (94)
T ss_pred EeeCCCCEEEEEEeC--CCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence 678999999999998 8899999999876322 1 123333333 45677899999999999999
Q ss_pred EEEEEcCCccEE
Q psy2166 766 TCRATNKWGQAE 777 (805)
Q Consensus 766 ~C~a~N~~G~~~ 777 (805)
.|.|.|..++.+
T Consensus 81 ~C~v~~~~~~~~ 92 (94)
T cd07690 81 ICEVEDKKEEVE 92 (94)
T ss_pred EEEECCccceEE
Confidence 999999877653
|
Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.9e-10 Score=91.59 Aligned_cols=79 Identities=16% Similarity=0.125 Sum_probs=62.0
Q ss_pred cccCCCeEEEEEEEeeC---CCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEE
Q psy2166 507 QLKEGQSAHFEARLTPV---TDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 583 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~---g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~ 583 (805)
.+.+|.++.|.|...+. .+|.|.+.|+|||+++....+... .+ ..|.|.++..+|+|.|+|.|.|..|.....
T Consensus 6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~--~~--~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~ 81 (92)
T cd05757 6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV--KG--SKLLIQNVTEEDAGNYTCKLTFTHNGKQYN 81 (92)
T ss_pred EEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe--cC--CEEEEeeCChhhCEEEEEEEEecCCCEEEE
Confidence 37899999999987531 136789999999999976544332 22 369999999999999999999999987766
Q ss_pred EEEEEe
Q psy2166 584 ASLKCV 589 (805)
Q Consensus 584 ~~l~V~ 589 (805)
++..+.
T Consensus 82 ~t~t~~ 87 (92)
T cd05757 82 VTRTIS 87 (92)
T ss_pred EEEEEE
Confidence 655544
|
Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1 |
| >cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.8e-10 Score=91.77 Aligned_cols=78 Identities=24% Similarity=0.366 Sum_probs=60.7
Q ss_pred EEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEec--CCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEe
Q psy2166 68 FIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPL--ELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWN 145 (805)
Q Consensus 68 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i--~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 145 (805)
|.......+.+.+|+.++|.|.... +.|.+.|.|+||+.++ ..+.|..+...++ .|.|.+++.+|+|.|.|.|.|
T Consensus 5 f~~~~~~~~~v~eG~~~~L~C~pP~-g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G--~L~fs~v~~~D~g~Y~C~A~n 81 (96)
T cd05727 5 FPLEERDEVKVKEGWGVVLFCDPPP-HYPDLSYRWLLNEFPNFIPEDGRRFVSQTNG--NLYIAKVEASDRGNYSCFVSS 81 (96)
T ss_pred cCcCCcCceeeeeCCcEEEeeCCCC-CCCCCEEEEEECCcccccccCCCeEEeCCCC--cEEEeecCHhhCceeEEEEEe
Confidence 4444445678999999999998763 7899999999998764 3344544554333 799999999999999999999
Q ss_pred CCe
Q psy2166 146 LAG 148 (805)
Q Consensus 146 ~~g 148 (805)
...
T Consensus 82 ~~~ 84 (96)
T cd05727 82 PSS 84 (96)
T ss_pred ccc
Confidence 753
|
Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. |
| >PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.9e-10 Score=89.05 Aligned_cols=78 Identities=35% Similarity=0.534 Sum_probs=62.0
Q ss_pred CeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEc
Q psy2166 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 771 (805)
Q Consensus 692 P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N 771 (805)
|.|...+ . .+.+|+.+.|.|.+. ++|.+.+.|++++..+..+.. .|.|.++..+|+|.|+|.|.|
T Consensus 2 P~l~~~~--~-~v~~g~~~~l~C~~~--~~p~~~~~w~~~~~~~~~~~~----------~~~~~~~~~~~~g~y~C~~~~ 66 (80)
T PF13895_consen 2 PVLSSSP--Q-SVEEGDSVTLTCSVS--GNPPPQVQWYKNGSPINSSQN----------GLFIPNVSPEDSGNYTCRASN 66 (80)
T ss_dssp -EEEEES--S-EEETTSEEEEEEEEE--SSSSSEEEEEETTEEEEEESS----------EEEESSEEGGGTEEEEEEEEE
T ss_pred cEEEccc--e-EEeCCCcEEEEEEEE--cccceeeeeeeeeeeeeeeee----------eeeeeeeccccCEEEEEEEEe
Confidence 5566555 3 789999999999999 999999999999987763321 177889999999999999999
Q ss_pred CCc-cEEEEEEEEE
Q psy2166 772 KWG-QAEISVNLEC 784 (805)
Q Consensus 772 ~~G-~~~~~~~l~V 784 (805)
..| ..+.+++|+|
T Consensus 67 ~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 67 GSGSNTSTSVNVTV 80 (80)
T ss_dssp TTEEEEEEEEEEEE
T ss_pred CCCCeEeeeEEeeC
Confidence 665 6666666665
|
... |
| >cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM) | Back alignment and domain information |
|---|
Probab=99.09 E-value=3.8e-10 Score=89.84 Aligned_cols=70 Identities=23% Similarity=0.344 Sum_probs=52.2
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEc-c-------CCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcce-EEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKL-P-------HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD-VTKA 584 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l-~-------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~ 584 (805)
++|.|.+. |.|.|.++|+|++... . ...++....+ ..|.|.++..+|+|.|+|.|.|..|.. +..+
T Consensus 1 v~l~C~~~--G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~ 75 (79)
T cd05734 1 VTLNCSAE--GYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSN---GSLLIKHVLEEDSGYYLCKVSNDVGADASKSM 75 (79)
T ss_pred CEeEeeCe--EeCCCEEEEEECCCccccccccccccCCCEEEecC---CeEEECcCCcccCEEEEEEEEeCCCCCCceEE
Confidence 57999999 7799999999964321 1 2334443332 259999999999999999999999987 5555
Q ss_pred EEEE
Q psy2166 585 SLKC 588 (805)
Q Consensus 585 ~l~V 588 (805)
.|.|
T Consensus 76 ~l~~ 79 (79)
T cd05734 76 VLTV 79 (79)
T ss_pred EEeC
Confidence 5543
|
Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. |
| >cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.7e-10 Score=89.08 Aligned_cols=77 Identities=21% Similarity=0.192 Sum_probs=58.8
Q ss_pred CCeEEEEEEEeecCCC--CeEEEEEECCEEccC---CCC--eEE-EeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEE
Q psy2166 707 GEIAHFEASLIPVGDQ--TMTVEFLYNGKPIEA---SHR--IRT-VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 778 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p--~~~v~W~~~g~~l~~---~~~--~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~ 778 (805)
|+++.|.|.+. +.| ...+.|.+.++.+.. ... ... ......++|.|.+++.+|+|.|+|.|.|..|....
T Consensus 1 Ge~~~L~C~~~--~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~ 78 (86)
T cd05862 1 GEKLVLNCTAR--TELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKN 78 (86)
T ss_pred CCcEEEEEEEE--eCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecc
Confidence 78999999998 554 568899987764321 111 111 11234568999999999999999999999999999
Q ss_pred EEEEEEE
Q psy2166 779 SVNLECV 785 (805)
Q Consensus 779 ~~~l~V~ 785 (805)
++.|.|+
T Consensus 79 ~t~~~V~ 85 (86)
T cd05862 79 STIVIVH 85 (86)
T ss_pred cEEEEEe
Confidence 9999986
|
IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge |
| >cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-09 Score=88.72 Aligned_cols=81 Identities=15% Similarity=0.274 Sum_probs=60.5
Q ss_pred CCceecCCCcEEEEEEEecCCCCCceEEEEECCEec--------CCCCceEEEec-CcEEEEEEcccccCCCeEEEEEEE
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPL--------ELGSRFKTTAD-FGFVTLDLTEVYDRDQGIYTCRAW 144 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i--------~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~ 144 (805)
.++.+.+|++++|+|.+. +.|.+.|.|+|++..+ ..+.|+.+... ....+|.|.+++.+|+|.|+|.+.
T Consensus 5 ~~~tv~~G~tv~L~C~v~--g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~ 82 (95)
T cd05882 5 QDETVAVGGTVTLKCGVK--EHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIF 82 (95)
T ss_pred ccEEEecCCcEEEEEEEe--CCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEE
Confidence 367899999999999999 6788999999987543 13346654333 346799999999999999999997
Q ss_pred eCCeeEEEEEEEE
Q psy2166 145 NLAGETFTSTTIY 157 (805)
Q Consensus 145 n~~g~~~~~~~l~ 157 (805)
... .....++|+
T Consensus 83 t~~-~~~~~~~~~ 94 (95)
T cd05882 83 TMP-VRTAKATVT 94 (95)
T ss_pred eec-cccEEEEEE
Confidence 632 333444444
|
Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format |
| >smart00410 IG_like Immunoglobulin like | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-09 Score=86.75 Aligned_cols=80 Identities=29% Similarity=0.404 Sum_probs=70.7
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC-CEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN-GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~-g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
.+..|+++.|.|.+. +.+.+.+.|+++ +..+....++..........|.|.++..+|+|.|+|.+.|..|.....+.
T Consensus 5 ~~~~g~~~~l~C~~~--~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00410 5 TVKEGESVTLSCEVS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred EEeCCCeEEEEEEEc--cCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 788999999999998 778899999998 88888777777776665678999999999999999999999998888877
Q ss_pred EEE
Q psy2166 782 LEC 784 (805)
Q Consensus 782 l~V 784 (805)
|.|
T Consensus 83 l~V 85 (86)
T smart00410 83 LTV 85 (86)
T ss_pred EEE
Confidence 776
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. |
| >smart00409 IG Immunoglobulin | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-09 Score=86.75 Aligned_cols=80 Identities=29% Similarity=0.404 Sum_probs=70.7
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC-CEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN-GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~-g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
.+..|+++.|.|.+. +.+.+.+.|+++ +..+....++..........|.|.++..+|+|.|+|.+.|..|.....+.
T Consensus 5 ~~~~g~~~~l~C~~~--~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00409 5 TVKEGESVTLSCEVS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred EEeCCCeEEEEEEEc--cCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 788999999999998 778899999998 88888777777776665678999999999999999999999998888877
Q ss_pred EEE
Q psy2166 782 LEC 784 (805)
Q Consensus 782 l~V 784 (805)
|.|
T Consensus 83 l~V 85 (86)
T smart00409 83 LTV 85 (86)
T ss_pred EEE
Confidence 776
|
|
| >smart00408 IGc2 Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.1e-10 Score=83.51 Aligned_cols=63 Identities=32% Similarity=0.506 Sum_probs=52.2
Q ss_pred CCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy2166 706 EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 774 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G 774 (805)
+|+++.|.|.+. +.|.+.+.|++++..+.. ...... ....|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 ~g~~~~l~C~~~--~~~~~~v~W~~~~~~~~~--~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAE--GDPVPNITWLKDGKPLPE--SNRLSA--SGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCc--cCCCCeEEEEECCEECCC--CCEEec--CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 589999999987 889999999999998872 222222 234799999999999999999999876
|
|
| >cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.7e-09 Score=85.89 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=67.5
Q ss_pred ccCCCCeEEEEEEEeecCCCCeE-EEEEECCEEccCCCC-eEEEeeC----cEEEEEEcCCCCCCCEEEEEEEEcCCccE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMT-VEFLYNGKPIEASHR-IRTVHAF----GMVVLEILGTKIEDTGVYTCRATNKWGQA 776 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~-v~W~~~g~~l~~~~~-~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 776 (805)
.|.+|+.+.|.|.++ ++|.|. +.|.+++..+..... .....+. -.+.|+|..++.+|+|.|+|.|.|..+..
T Consensus 14 ~v~~gE~~~L~V~ie--AYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 14 FVNAGENLDLIVEYE--AYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred EEECCCCEEEEEEEE--eCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 899999999999999 999998 999999987654433 1112211 24789999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy2166 777 EISVNLECV 785 (805)
Q Consensus 777 ~~~~~l~V~ 785 (805)
+.++.|.|+
T Consensus 92 s~tF~l~v~ 100 (101)
T cd05860 92 SVTFNVYVN 100 (101)
T ss_pred EEEEEEEEe
Confidence 999999885
|
Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. |
| >cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.3e-09 Score=88.54 Aligned_cols=77 Identities=21% Similarity=0.329 Sum_probs=59.3
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC--CEE----ccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEE-cCCcc
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--GKP----IEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT-NKWGQ 775 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g~~----l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~-N~~G~ 775 (805)
.+.+|+++.|.|.. +.|.|.+.|+|. |.. +....++.. ..+ .|.|.++..+|+|.|+|.|. |..|.
T Consensus 7 ~~~eG~~v~L~C~~---~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~--~~~--~L~I~~~~~~DsG~Y~C~a~~~~~~~ 79 (91)
T cd05871 7 YGVENNSTFLECLP---KSPQASVKWLFQRGGDQRKEEVKTEERLIH--TER--GLLLRSLQRSDAGVYTCTAVEHSFSQ 79 (91)
T ss_pred EEecCCcEEEEEEC---CCCCceEEEEEECCCCCccccccccccEEE--ecC--eEEEeeCChhHCEEEEEEEEccCCeE
Confidence 68899999999995 579999999983 322 112334432 223 49999999999999999998 68888
Q ss_pred EEEEEEEEEEE
Q psy2166 776 AEISVNLECVV 786 (805)
Q Consensus 776 ~~~~~~l~V~~ 786 (805)
+...++|+|..
T Consensus 80 ~~~~~~l~v~~ 90 (91)
T cd05871 80 TLAKYTLHVIE 90 (91)
T ss_pred EEEEEEEEEec
Confidence 88888888853
|
Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula |
| >cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins | Back alignment and domain information |
|---|
Probab=99.04 E-value=8e-10 Score=88.29 Aligned_cols=65 Identities=20% Similarity=0.212 Sum_probs=53.7
Q ss_pred ccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceE
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDV 581 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 581 (805)
+.+|++++|.|.+.. +.+.+.+.|+|+|..+.... ....|.|.+++.+|+|.|+|.|.|..|...
T Consensus 11 V~~G~~vtL~C~~~~-~~~~~~~~w~k~g~~~~~~~--------~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~ 75 (83)
T cd05753 11 VFEGEPLVLRCHGWK-NKPVYKVTYYRDGKAKKYSH--------SNSNLSIPQATLSDSGSYHCSGIIGSYDYS 75 (83)
T ss_pred ecCCCCEEEEeeCCC-CCcceEEEEEECCeEccccC--------CCceEEECccCHHHCEEEEEEEEeCCceec
Confidence 899999999999863 56777999999998774321 223699999999999999999999988653
|
Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity. |
| >cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively) | Back alignment and domain information |
|---|
Probab=99.02 E-value=2e-09 Score=89.16 Aligned_cols=79 Identities=15% Similarity=0.260 Sum_probs=59.4
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEE--------ccCCCCeEEEe-eCcEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKP--------IEASHRIRTVH-AFGMVVLEILGTKIEDTGVYTCRATNKW 773 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~--------l~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 773 (805)
.+.+|++++|.|.+. +.|.+.+.|++-+.. .....++.+.. ......|.|.+++.+|+|.|+|.|.+..
T Consensus 8 ~v~~G~~v~L~C~~~--~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 85 (95)
T cd05717 8 TVVEGGTATLKCRVK--NNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP 85 (95)
T ss_pred EEcCCCCEEEEEEEC--CCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence 799999999999998 888899999862211 11234665532 2345689999999999999999999876
Q ss_pred ccEEEEEEEEE
Q psy2166 774 GQAEISVNLEC 784 (805)
Q Consensus 774 G~~~~~~~l~V 784 (805)
. .+.++.|+|
T Consensus 86 ~-~~~~~~~~v 95 (95)
T cd05717 86 V-QTAKATVTV 95 (95)
T ss_pred C-ceEEEEEEC
Confidence 4 466666665
|
Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form |
| >cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.8e-09 Score=88.18 Aligned_cols=78 Identities=24% Similarity=0.446 Sum_probs=59.9
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCC----ceEEEecCcEEEEEEcccccCCCeEEEEEEEeCC-ee
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS----RFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLA-GE 149 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~----~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~-g~ 149 (805)
.+.+.+|+.++|.|.+. + |.+.+.|+|++..+.... ++..... .|.|.+++.+|+|.|+|.|.+.. +.
T Consensus 5 ~~~v~~g~~v~L~C~~~--~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~----~L~I~~~~~~D~G~Y~C~a~~~~~~~ 77 (89)
T cd04979 5 VVTVVEGNSVFLECSPK--S-NLASVVWLFQGGPLQRKEEPEERLLVTED----GLLIRSVSPADAGVYTCQSVEHGFKQ 77 (89)
T ss_pred EEEEECCCcEEEEEeCC--C-CCceEEEEECCcccccccCcCceEEEcCC----CEEEccCCHHHCEEEEEEEecCccce
Confidence 46788999999999987 3 778999999998876542 4433322 59999999999999999998764 34
Q ss_pred EEEEEEEEEe
Q psy2166 150 TFTSTTIYCS 159 (805)
Q Consensus 150 ~~~~~~l~V~ 159 (805)
...+..|.|.
T Consensus 78 ~~~~~~l~V~ 87 (89)
T cd04979 78 TLATYSLNVL 87 (89)
T ss_pred eEeEEEEEEe
Confidence 4555666653
|
Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization. |
| >cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)) | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-09 Score=84.35 Aligned_cols=64 Identities=8% Similarity=0.079 Sum_probs=50.6
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeC---cEEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF---GMVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
+.|.|... .|+|++.|+|||||++|..... ....+. ...+|+|...+.+|+|.|+|+|.|.++.
T Consensus 2 ~~L~C~s~-~skP~a~i~W~k~~~~l~~~~~-~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSP-RSKPAATLRWYRDRKELKGVIS-QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCC-CccCCCeEEEEECCEECCCCcc-cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 78999998 5899999999999999975421 111111 1346999999999999999999999885
|
Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. |
| >cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-09 Score=88.21 Aligned_cols=73 Identities=15% Similarity=0.217 Sum_probs=56.5
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEECCEecC--------------CCCceEEEe---cCcEEEEEEcccccCCCeE
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLE--------------LGSRFKTTA---DFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~--------------~~~~~~~~~---~~~~~~L~I~~~~~~D~G~ 138 (805)
+.+.+|++|+|+|.+. +.+.+.+.|+++++... ..+|+.... +.+.++|+|.+++.+|+|.
T Consensus 2 v~~~~G~~VtL~C~~s--~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgt 79 (94)
T cd07690 2 VLGKKGDTAELPCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDT 79 (94)
T ss_pred eEeeCCCCEEEEEEeC--CCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEE
Confidence 4678999999999998 67888999998774321 123444444 4566789999999999999
Q ss_pred EEEEEEeCCeeE
Q psy2166 139 YTCRAWNLAGET 150 (805)
Q Consensus 139 Y~C~a~n~~g~~ 150 (805)
|+|.+.|..++.
T Consensus 80 Y~C~v~~~~~~~ 91 (94)
T cd07690 80 YICEVEDKKEEV 91 (94)
T ss_pred EEEEECCccceE
Confidence 999998876554
|
Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.3e-10 Score=89.99 Aligned_cols=69 Identities=14% Similarity=0.207 Sum_probs=57.0
Q ss_pred ccCCCCeEEEEEE-EeecCCCCeEEEEEECCEE-ccCCCCeEEEeeCcEEEEEEcCCCCCCCE-EEEEEEEcCCccE
Q psy2166 703 NLSEGEIAHFEAS-LIPVGDQTMTVEFLYNGKP-IEASHRIRTVHAFGMVVLEILGTKIEDTG-VYTCRATNKWGQA 776 (805)
Q Consensus 703 ~v~~G~~~~l~C~-~~~~g~p~~~v~W~~~g~~-l~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~N~~G~~ 776 (805)
.|.+|+.+.|.|. .. |.|.|.|.|++++.. +..+.|+.+..+ | .|.|.+|..+|+| .|.|.|.|.+...
T Consensus 14 ~V~eG~~~~L~C~pP~--g~P~P~i~W~~~~~~~i~~~~Ri~~~~~-G--nL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 14 EVEEGDSVVLPCNPPK--SAVPLRIYWMNSDLLHITQDERVSMGQN-G--NLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred EEecCCCEEEEecCCC--CCCCCEEEEECCCCccccccccEEECCC-c--eEEEEEEehhhCCCCeEEEEEcccccc
Confidence 8999999999997 46 999999999988754 445566655444 4 6999999999999 7999999987543
|
Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.8e-10 Score=88.71 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=63.3
Q ss_pred CeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEe-cCCCCceEEEecCcEEEEEEcccccCCCe-EEEEEE
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKP-LELGSRFKTTADFGFVTLDLTEVYDRDQG-IYTCRA 143 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~-i~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a 143 (805)
|.|.......+.|.+|+.+.|.|... .|.|.|.|.|++++.. +..+.|+.+..+| .|.|.+++.+|+| .|.|.|
T Consensus 3 ~~~~~~~~~~v~V~eG~~~~L~C~pP-~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~G---nL~fs~v~~~D~g~~Y~C~a 78 (95)
T cd05845 3 PKWPKEKIRPVEVEEGDSVVLPCNPP-KSAVPLRIYWMNSDLLHITQDERVSMGQNG---NLYFANVEEQDSHPDYICHA 78 (95)
T ss_pred CcCCccccceeEEecCCCEEEEecCC-CCCCCCEEEEECCCCccccccccEEECCCc---eEEEEEEehhhCCCCeEEEE
Confidence 55555555678999999999999853 2799999999987654 4556677777665 7999999999999 899999
Q ss_pred EeCC
Q psy2166 144 WNLA 147 (805)
Q Consensus 144 ~n~~ 147 (805)
.|..
T Consensus 79 ~~~~ 82 (95)
T cd05845 79 HFPG 82 (95)
T ss_pred Eccc
Confidence 9875
|
Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. |
| >cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively) | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.5e-09 Score=87.76 Aligned_cols=83 Identities=17% Similarity=0.318 Sum_probs=60.2
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEECCEec--------CCCCceEEEe-cCcEEEEEEcccccCCCeEEEEEE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPL--------ELGSRFKTTA-DFGFVTLDLTEVYDRDQGIYTCRA 143 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i--------~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a 143 (805)
..++.+.+|++++|.|.+. +.+.+.+.|++.+..+ ....||.+.. .+...+|+|.+++.+|+|.|+|.+
T Consensus 4 ~~~~~v~~G~~v~L~C~~~--~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~ 81 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVK--NNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSL 81 (95)
T ss_pred CCcEEEcCCCCEEEEEEEC--CCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEE
Confidence 3467899999999999998 4677899998633211 1235776632 334568999999999999999999
Q ss_pred EeCCeeEEEEEEEEE
Q psy2166 144 WNLAGETFTSTTIYC 158 (805)
Q Consensus 144 ~n~~g~~~~~~~l~V 158 (805)
.+... ....++|+|
T Consensus 82 ~~~~~-~~~~~~~~v 95 (95)
T cd05717 82 YTMPV-QTAKATVTV 95 (95)
T ss_pred ecCCC-ceEEEEEEC
Confidence 87642 345555553
|
Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form |
| >cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.9e-09 Score=85.78 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=59.9
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCC---C--ceEE-EeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEE
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG---H--RYRT-FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~---~--~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 584 (805)
|+++.|.|.+.+...+.+.+.|.+.++.+... . +... ......+.|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 78999999998534567789999887654211 1 1111 1123456899999999999999999999999999999
Q ss_pred EEEEe
Q psy2166 585 SLKCV 589 (805)
Q Consensus 585 ~l~V~ 589 (805)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 98885
|
IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge |
| >smart00410 IG_like Immunoglobulin like | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-08 Score=81.69 Aligned_cols=82 Identities=28% Similarity=0.461 Sum_probs=69.7
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEEC-CEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN-GKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTS 153 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~-g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~ 153 (805)
.+.+.+|++++|.|.+. +.+.+.+.|+++ +..+....++.........+|.|.+++.+|+|.|.|.+.+..+.....
T Consensus 3 ~~~~~~g~~~~l~C~~~--~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00410 3 SVTVKEGESVTLSCEVS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred cEEEeCCCeEEEEEEEc--cCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence 46788999999999998 457889999998 888887778887777666789999999999999999999887777666
Q ss_pred EEEEE
Q psy2166 154 TTIYC 158 (805)
Q Consensus 154 ~~l~V 158 (805)
..|.|
T Consensus 81 ~~l~V 85 (86)
T smart00410 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 66655
|
IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. |
| >smart00409 IG Immunoglobulin | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.9e-08 Score=81.69 Aligned_cols=82 Identities=28% Similarity=0.461 Sum_probs=69.7
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEEC-CEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN-GKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTS 153 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~-g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~ 153 (805)
.+.+.+|++++|.|.+. +.+.+.+.|+++ +..+....++.........+|.|.+++.+|+|.|.|.+.+..+.....
T Consensus 3 ~~~~~~g~~~~l~C~~~--~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~ 80 (86)
T smart00409 3 SVTVKEGESVTLSCEVS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASST 80 (86)
T ss_pred cEEEeCCCeEEEEEEEc--cCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEE
Confidence 46788999999999998 457889999998 888887778887777666789999999999999999999887777666
Q ss_pred EEEEE
Q psy2166 154 TTIYC 158 (805)
Q Consensus 154 ~~l~V 158 (805)
..|.|
T Consensus 81 ~~l~V 85 (86)
T smart00409 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 66655
|
|
| >cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.6e-08 Score=81.91 Aligned_cols=71 Identities=17% Similarity=0.259 Sum_probs=56.8
Q ss_pred CCceecCCCcEEEEEEEecCCCCCceEEEEECCEec--------CCCCceEEEe-cCcEEEEEEcccccCCCeEEEEEEE
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPL--------ELGSRFKTTA-DFGFVTLDLTEVYDRDQGIYTCRAW 144 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i--------~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~ 144 (805)
+++.+.+|++++|+|.+.. .....+.|++.+..+ ..+.||.... ++...+|+|.+++.+|+|.|.|.+.
T Consensus 5 ~nvtv~~G~ta~L~C~v~~--~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~ 82 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKN--NDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLY 82 (95)
T ss_pred CceEEcCCCcEEEEEEEcc--CCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEE
Confidence 3678999999999999994 445578888766332 3566888765 5678899999999999999999997
Q ss_pred eC
Q psy2166 145 NL 146 (805)
Q Consensus 145 n~ 146 (805)
..
T Consensus 83 t~ 84 (95)
T cd05881 83 TD 84 (95)
T ss_pred cc
Confidence 54
|
Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a |
| >PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs | Back alignment and domain information |
|---|
Probab=98.92 E-value=3e-09 Score=80.82 Aligned_cols=61 Identities=25% Similarity=0.339 Sum_probs=49.2
Q ss_pred CCeEEEEEEE-eecCCCCeEEEEEECCEEccCCCCeEEEeeCcE--EEEEEcCCCCCCCEEEEEEE
Q psy2166 707 GEIAHFEASL-IPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGM--VVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 707 G~~~~l~C~~-~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~a 769 (805)
|++++|.|.+ . +.|.+.+.|+|+++.+.............. ..|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~--~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSS--GPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEE--SSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCC--CCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 5 889999999999987766655444333332 13999999999999999987
|
; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H .... |
| >cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-08 Score=83.25 Aligned_cols=78 Identities=24% Similarity=0.379 Sum_probs=57.8
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEEC--CEe----cCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEE-eCC
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKP----LELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAW-NLA 147 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~----i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~-n~~ 147 (805)
.+.+.+|+.++|.|... .|.+.+.|+|+ +.. +..+.++.... ..|.|.+++.+|+|.|+|.+. +..
T Consensus 5 ~~~~~eG~~v~L~C~~~---~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~----~~L~I~~~~~~DsG~Y~C~a~~~~~ 77 (91)
T cd05871 5 VVYGVENNSTFLECLPK---SPQASVKWLFQRGGDQRKEEVKTEERLIHTE----RGLLLRSLQRSDAGVYTCTAVEHSF 77 (91)
T ss_pred EEEEecCCcEEEEEECC---CCCceEEEEEECCCCCccccccccccEEEec----CeEEEeeCChhHCEEEEEEEEccCC
Confidence 35678999999999953 67889999983 322 12234554432 269999999999999999998 466
Q ss_pred eeEEEEEEEEEe
Q psy2166 148 GETFTSTTIYCS 159 (805)
Q Consensus 148 g~~~~~~~l~V~ 159 (805)
+.......|+|.
T Consensus 78 ~~~~~~~~l~v~ 89 (91)
T cd05871 78 SQTLAKYTLHVI 89 (91)
T ss_pred eEEEEEEEEEEe
Confidence 766677777764
|
Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula |
| >cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2) | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.5e-09 Score=85.01 Aligned_cols=73 Identities=11% Similarity=0.225 Sum_probs=55.2
Q ss_pred ccCCCCeEEEEEEE-eec--CCCCeEEEEEECCEEccCCCC-eEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEE
Q psy2166 703 NLSEGEIAHFEASL-IPV--GDQTMTVEFLYNGKPIEASHR-IRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 777 (805)
Q Consensus 703 ~v~~G~~~~l~C~~-~~~--g~p~~~v~W~~~g~~l~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~ 777 (805)
.+.+|....|.|.- ..+ .++.+.++||||++++....+ +....+.. .|.|.+|..+|+|.|+|+|.|.+|...
T Consensus 6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~--~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGST--YLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCC--EEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 57789999999973 211 347789999999999875543 22222222 699999999999999999999987553
|
Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1) | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.9e-09 Score=83.77 Aligned_cols=82 Identities=13% Similarity=0.194 Sum_probs=59.2
Q ss_pred CceecCCCcEEEEEEEec---------CCCCCceEEEEECCEecCCCCc-----eEEEecCcEEEEEEcccccCCCeEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEP---------KNDPNLKIEWIFNGKPLELGSR-----FKTTADFGFVTLDLTEVYDRDQGIYT 140 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~---------~~~p~~~v~W~k~g~~i~~~~~-----~~~~~~~~~~~L~I~~~~~~D~G~Y~ 140 (805)
...+.+|+++.|.|..-. .......+.|+|++..+..... .+++..+. .|.|.++..+|+|.|+
T Consensus 9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~ 86 (104)
T cd05896 9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYT 86 (104)
T ss_pred eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEE
Confidence 357889999999999720 0133458999999755544321 23343333 7999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEE
Q psy2166 141 CRAWNLAGETFTSTTIYC 158 (805)
Q Consensus 141 C~a~n~~g~~~~~~~l~V 158 (805)
|+++|.......+..|+|
T Consensus 87 C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 87 CVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EEECCCCcceEEEEEEEC
Confidence 999998877777766654
|
Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of |
| >cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1) | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.8e-09 Score=82.90 Aligned_cols=80 Identities=16% Similarity=0.234 Sum_probs=61.0
Q ss_pred ccCCCCeEEEEEEEee---------cCCCCeEEEEEECCEEccCCCC-----eEEEeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIP---------VGDQTMTVEFLYNGKPIEASHR-----IRTVHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~---------~g~p~~~v~W~~~g~~l~~~~~-----~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
.+.+|+++.|.|...- ...+...+.|+|++..+..... .++...+. .|.|.++..+|+|.|+|+
T Consensus 11 ~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~C~ 88 (104)
T cd05896 11 MVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYTCV 88 (104)
T ss_pred EEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEEEE
Confidence 7899999999999710 0123458999999865554331 24444555 799999999999999999
Q ss_pred EEcCCccEEEEEEEEE
Q psy2166 769 ATNKWGQAEISVNLEC 784 (805)
Q Consensus 769 a~N~~G~~~~~~~l~V 784 (805)
+.|.-.-...++.|+|
T Consensus 89 ~rN~t~C~~~~i~l~V 104 (104)
T cd05896 89 LRNSTYCMKVSMSLTV 104 (104)
T ss_pred ECCCCcceEEEEEEEC
Confidence 9999988888887765
|
Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of |
| >cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2) | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.5e-09 Score=83.39 Aligned_cols=72 Identities=15% Similarity=0.310 Sum_probs=54.9
Q ss_pred ccCCCeEEEEEEE-eeC--CCCCcEEEEEECCEEccCCC-ceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceE
Q psy2166 508 LKEGQSAHFEARL-TPV--TDPDLVVEWFYNGKKLPHGH-RYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDV 581 (805)
Q Consensus 508 v~~G~~v~L~C~v-~~~--g~p~~~v~W~~~g~~l~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 581 (805)
+.+|.+..|.|.- .++ ..+.++++|+||+++|.... ++....+ ...|.|.++..+|+|.|+|.|.+..|...
T Consensus 7 ~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~--~~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 7 LFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKG--STYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred eccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCC--CCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 7789999999972 222 45777999999999997544 3332222 23599999999999999999999887653
|
Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. |
| >cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)) | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-08 Score=79.61 Aligned_cols=64 Identities=9% Similarity=0.161 Sum_probs=50.7
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeC----CEEEEEEccCCCCCCEEEEEEEEcCCcce
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF----GIVILDILYCYEENSGVYECRATNKYGSD 580 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 580 (805)
++|+|...+ ++|+++|+|+|||++|..... . ...+ ..+.|.|.....+|.+.|+|+|.|.++..
T Consensus 2 ~~L~C~s~~-skP~a~i~W~k~~~~l~~~~~-~-~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPR-SKPAATLRWYRDRKELKGVIS-Q-QENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCC-ccCCCeEEEEECCEECCCCcc-c-ccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 789999997 899999999999999964321 1 1111 23469999888999999999999998864
|
Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression. |
| >cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.5e-08 Score=79.88 Aligned_cols=76 Identities=25% Similarity=0.394 Sum_probs=61.6
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 782 (805)
++.+|+.+.|.|... ++.+.+.|+++|..+..+.++....+ | |.|.++..+|+|.|.|.|. +.|-...-+.+
T Consensus 7 tv~~g~~v~L~C~~~---s~~A~v~W~~ng~~l~~~~r~~~~~~-G---LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~y 78 (85)
T cd05872 7 TVAPGADVVLPCQLR---SNLASPVWLFNGTPLNAQFSYRVGTD-G---LLILVTSPEHSGTYRCYSE-EEGFQQLVASY 78 (85)
T ss_pred EEecCCCEEEECCCC---CCCccEEEEECCcccCCCcceEEeCC-C---CEEEECCHhhCEEEEEEEe-cCCCeEEEEEE
Confidence 899999999999996 46789999999999988777664443 3 7799999999999999976 66766666665
Q ss_pred EEEE
Q psy2166 783 ECVV 786 (805)
Q Consensus 783 ~V~~ 786 (805)
.+.+
T Consensus 79 ~l~v 82 (85)
T cd05872 79 SLNV 82 (85)
T ss_pred EEEE
Confidence 5544
|
Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis. |
| >smart00408 IGc2 Immunoglobulin C-2 Type | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-08 Score=76.98 Aligned_cols=63 Identities=35% Similarity=0.486 Sum_probs=50.8
Q ss_pred CCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCc
Q psy2166 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG 578 (805)
Q Consensus 510 ~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 578 (805)
+|++++|.|.+. +.|.+.+.|++++..+.. ...... ....|.|.++..+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~--~~~~~~v~W~~~~~~~~~--~~~~~~--~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAE--GDPVPNITWLKDGKPLPE--SNRLSA--SGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCc--cCCCCeEEEEECCEECCC--CCEEec--CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 589999999987 678889999999998872 222222 234699999999999999999999765
|
|
| >cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.6e-08 Score=78.38 Aligned_cols=83 Identities=12% Similarity=0.138 Sum_probs=66.1
Q ss_pred cccccCCCeEEEEEEEeeCCCCCcE-EEEEECCEEccCCCceEEEeeC-----CEEEEEEccCCCCCCEEEEEEEEcCCc
Q psy2166 505 VTQLKEGQSAHFEARLTPVTDPDLV-VEWFYNGKKLPHGHRYRTFHDF-----GIVILDILYCYEENSGVYECRATNKYG 578 (805)
Q Consensus 505 ~~~v~~G~~v~L~C~v~~~g~p~~~-v~W~~~g~~l~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g 578 (805)
...+.+|+.+.|.|.+.+ .|.|+ +.|.+++..+.......+.... -.+.|.|.++..+|+|.|+|.|.|..+
T Consensus 12 ~~~v~~gE~~~L~V~ieA--YP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~ 89 (101)
T cd05860 12 TIFVNAGENLDLIVEYEA--YPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDA 89 (101)
T ss_pred eEEEECCCCEEEEEEEEe--CCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCC
Confidence 345899999999999995 57777 9999999887543331222111 246899999999999999999999999
Q ss_pred ceEEEEEEEEe
Q psy2166 579 SDVTKASLKCV 589 (805)
Q Consensus 579 ~~~~~~~l~V~ 589 (805)
..+.++.|.|.
T Consensus 90 ~~s~tF~l~v~ 100 (101)
T cd05860 90 SASVTFNVYVN 100 (101)
T ss_pred eEEEEEEEEEe
Confidence 99999998875
|
Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. |
| >PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.2e-08 Score=78.54 Aligned_cols=78 Identities=31% Similarity=0.504 Sum_probs=58.2
Q ss_pred CeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEe
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWN 145 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 145 (805)
|.+..+. ..+.+|+.++|.|.+. +.|...+.|++++..+..+.. .|.|.++..+|+|.|+|.+.+
T Consensus 2 P~l~~~~---~~v~~g~~~~l~C~~~--~~p~~~~~w~~~~~~~~~~~~----------~~~~~~~~~~~~g~y~C~~~~ 66 (80)
T PF13895_consen 2 PVLSSSP---QSVEEGDSVTLTCSVS--GNPPPQVQWYKNGSPINSSQN----------GLFIPNVSPEDSGNYTCRASN 66 (80)
T ss_dssp -EEEEES---SEEETTSEEEEEEEEE--SSSSSEEEEEETTEEEEEESS----------EEEESSEEGGGTEEEEEEEEE
T ss_pred cEEEccc---eEEeCCCcEEEEEEEE--cccceeeeeeeeeeeeeeeee----------eeeeeeeccccCEEEEEEEEe
Confidence 4544333 4789999999999998 688889999999877763221 277889999999999999999
Q ss_pred CCe-eEEEEEEEEE
Q psy2166 146 LAG-ETFTSTTIYC 158 (805)
Q Consensus 146 ~~g-~~~~~~~l~V 158 (805)
..+ .......|+|
T Consensus 67 ~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 67 GSGSNTSTSVNVTV 80 (80)
T ss_dssp TTEEEEEEEEEEEE
T ss_pred CCCCeEeeeEEeeC
Confidence 654 3344455543
|
... |
| >cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.9e-08 Score=79.12 Aligned_cols=67 Identities=16% Similarity=0.340 Sum_probs=54.0
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEc--------cCCCCeEEEe-eCcEEEEEEcCCCCCCCEEEEEEEEc
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI--------EASHRIRTVH-AFGMVVLEILGTKIEDTGVYTCRATN 771 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l--------~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N 771 (805)
++.+|++++|.|.+. +.....+.|++-|..+ ..+.|+.... ++...+|+|.++..+|+|.|.|.+..
T Consensus 8 tv~~G~ta~L~C~v~--~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 8 TVVEGEVAIISCRVK--NNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred EEcCCCcEEEEEEEc--cCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 899999999999998 6656678887755322 3567777665 56678999999999999999999865
|
Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a |
| >cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-08 Score=80.58 Aligned_cols=73 Identities=11% Similarity=0.182 Sum_probs=52.1
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEE-EeeCc----EEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT-VHAFG----MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~-~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 783 (805)
++|.|.+.+ +.|.+.|+|+|+|+++........ ..+++ .+.|.|.....+|.|.|+|.|.|..-.....+.++
T Consensus 2 ~~L~C~v~g-~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~ 79 (82)
T cd05759 2 YNLTCRARG-AKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVT 79 (82)
T ss_pred EEEEEEEeC-ccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEE
Confidence 689999982 379899999999998865432111 22222 24688988889999999999999875444443333
|
Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.9e-08 Score=78.30 Aligned_cols=64 Identities=20% Similarity=0.348 Sum_probs=56.0
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEe
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWN 145 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 145 (805)
...|..|+.+.|+|... .+.+.+.|++||..+..+.++....++ |.|.+++.+|+|.|.|.+.-
T Consensus 5 ~~tv~~g~~v~L~C~~~---s~~A~v~W~~ng~~l~~~~r~~~~~~G----LlI~~~~~~dsG~Y~C~s~E 68 (85)
T cd05872 5 NRTVAPGADVVLPCQLR---SNLASPVWLFNGTPLNAQFSYRVGTDG----LLILVTSPEHSGTYRCYSEE 68 (85)
T ss_pred EEEEecCCCEEEECCCC---CCCccEEEEECCcccCCCcceEEeCCC----CEEEECCHhhCEEEEEEEec
Confidence 46889999999999987 456799999999999888888777765 78999999999999999863
|
Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis. |
| >PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.5e-08 Score=76.94 Aligned_cols=61 Identities=26% Similarity=0.457 Sum_probs=48.4
Q ss_pred CCcEEEEEEE-ecCCCCCceEEEEECCEecCCCCceEEEecCcE--EEEEEcccccCCCeEEEEEE
Q psy2166 81 AQPLHLEAQV-EPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF--VTLDLTEVYDRDQGIYTCRA 143 (805)
Q Consensus 81 G~~v~L~C~~-~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~a 143 (805)
|+.++|.|.+ . +.+...|.|+|++..+.............. ..|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~--~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSS--GPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEE--SSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCC--CCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 8899999999 4 588889999999987766554444433321 13999999999999999986
|
; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H .... |
| >PHA03376 BARF1; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.5e-08 Score=83.99 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=56.9
Q ss_pred CceecCCCcEEEEEEEecC-CCCCceEEEEECC----Eec-------------CCCCceEEEecCcEEEEEEcccccCCC
Q psy2166 75 EFKLGEAQPLHLEAQVEPK-NDPNLKIEWIFNG----KPL-------------ELGSRFKTTADFGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~-~~p~~~v~W~k~g----~~i-------------~~~~~~~~~~~~~~~~L~I~~~~~~D~ 136 (805)
.+.+..|+.++|+|..... ..+...|.|+|++ ..+ ....++.+..+.++.+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 3567899999999998733 3467789999942 111 223456666667899999999999999
Q ss_pred eEEEEEEEeCCee
Q psy2166 137 GIYTCRAWNLAGE 149 (805)
Q Consensus 137 G~Y~C~a~n~~g~ 149 (805)
|.|+|........
T Consensus 100 GtY~C~fQkge~~ 112 (221)
T PHA03376 100 GNYLCRMKLGETE 112 (221)
T ss_pred ceEEEEEEcCCCc
Confidence 9999999876433
|
|
| >cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.3e-08 Score=80.75 Aligned_cols=74 Identities=14% Similarity=0.152 Sum_probs=56.4
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 770 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 770 (805)
+|.|...+.. .|.+|+.|+|.|.. ..+...+.|+|+|...... . .........|.|.+|+.+|+|.|+|.+.
T Consensus 2 kP~L~a~p~~--vV~~G~~VtL~C~~---~~~~~~f~l~k~g~~~~~~-~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~ 73 (91)
T cd05751 2 KPSLWAEPSS--VVPLGKPVTLRCQG---PYGAVEYRLYREGSTFAVK-K--PPEPQNKAKFFIPSMKREHAGRYRCYYR 73 (91)
T ss_pred CCEEEecCCC--ccCCCCcEEEEEec---CCCCCEEEEEECCCCcccc-c--cCCCceeEEEEccCCChhHCEEEEEEEE
Confidence 4666666653 58999999999987 4677899999999854421 1 1122334579999999999999999999
Q ss_pred cC
Q psy2166 771 NK 772 (805)
Q Consensus 771 N~ 772 (805)
|.
T Consensus 74 ~~ 75 (91)
T cd05751 74 SG 75 (91)
T ss_pred CC
Confidence 96
|
Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2), |
| >cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.6e-08 Score=77.15 Aligned_cols=73 Identities=19% Similarity=0.308 Sum_probs=51.6
Q ss_pred eEEEEEEEeeCCCCCcEEEEEECCEEccCCCceE-EEeeCC----EEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEE
Q psy2166 513 SAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR-TFHDFG----IVILDILYCYEENSGVYECRATNKYGSDVTKASL 586 (805)
Q Consensus 513 ~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~-~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 586 (805)
.++|+|.+.+ +.|.+.++|+|+|+++....... ...+++ .+.|.|.....+|.|.|+|.|.|........+.+
T Consensus 1 ~~~L~C~v~g-~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~ 78 (82)
T cd05759 1 PYNLTCRARG-AKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSV 78 (82)
T ss_pred CEEEEEEEeC-ccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEE
Confidence 3689999995 47888999999999986542211 112222 3468888877788999999999977554444433
|
Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. |
| >PHA03376 BARF1; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.8e-07 Score=81.14 Aligned_cols=123 Identities=16% Similarity=0.205 Sum_probs=82.5
Q ss_pred ccCCCceEEEEEEEee-CCCCCeEEEEEECCE----E-------------ccCCCcEEEEEEcCeEEEEEcCCCCcccEE
Q psy2166 214 NLSEGEIAHFEASLIP-VGDQTMTVEFLYNGK----P-------------IEASHRIRTVHAFGMVVLEILGTKIEDTGV 275 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~-~~~p~~~i~W~k~g~----~-------------l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 275 (805)
....|+.+.|.|...+ ...+...|.|+|.+. . .....++.+..+.++.+|.|.+++.+|.|.
T Consensus 22 ta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDdGt 101 (221)
T PHA03376 22 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGN 101 (221)
T ss_pred hheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCCce
Confidence 3678999999998752 233668999999421 1 111223344445688999999999999999
Q ss_pred EEEEEEcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECC
Q psy2166 276 YTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNG 344 (805)
Q Consensus 276 Y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g 344 (805)
|+|.+..........-.++++ .|..+........ ...-+..++.|... +.|.|.++|..+.
T Consensus 102 Y~C~fQkge~~~~k~ehLt~V-----~~~~Lsv~a~~~d-Fp~~~~~~i~C~sg--gfP~P~~~Wle~~ 162 (221)
T PHA03376 102 YLCRMKLGETEVTKQEHLSVV-----KPLTLSVHSERSQ-FPDFSVLTVTCTVN--AFPHPHVQWLMPE 162 (221)
T ss_pred EEEEEEcCCCceeeeeeeeee-----ecceEEEEecccc-CCCCCeeEEEEecC--CcCCchheecccc
Confidence 999999765544444444443 3333443332222 33366789999953 9999999998753
|
|
| >PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.6e-08 Score=77.76 Aligned_cols=74 Identities=23% Similarity=0.309 Sum_probs=49.9
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCC-CeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ-TMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p-~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
||.|...+... ....+. ++|.|.+. +.| .+.++|+ +......... .........|.|.++..+|.|.|+|.|
T Consensus 1 kP~I~~~~~~~-~~~~~~-~~l~C~~~--~~~~~~~~~W~-~~~~~~~~~~--~~~~~~~~~L~i~~v~~~~~g~y~C~a 73 (75)
T PF13927_consen 1 KPQISVPPPPV-VTSGGS-VTLTCSAE--GGPPPPSISWY-DSNPSFNSNS--RGSSSSNSTLTISNVTRSDNGTYTCIA 73 (75)
T ss_dssp ESEEEEESTSE-EETTEE-EEEEEEES--SEESSEEEEEE-TEEEEEEEEE--EEEEEEEEEEEESSCCGGGTEEEEEEE
T ss_pred CCEEEEcCCCc-Eeecee-EEEEEEEc--cccCCeEEEEE-ecCCceeeee--eeccceeeEEEEccCCHHhCcEEEEEE
Confidence 36666666655 333334 99999998 776 8999999 2111111111 122233457999999999999999999
Q ss_pred Ec
Q psy2166 770 TN 771 (805)
Q Consensus 770 ~N 771 (805)
.|
T Consensus 74 ~N 75 (75)
T PF13927_consen 74 SN 75 (75)
T ss_dssp EE
T ss_pred EC
Confidence 98
|
... |
| >cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.3e-07 Score=77.68 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=58.1
Q ss_pred CCCeEEEEEEEeecCCC------CeEEEEEECC-----E-Ec-c-CCCC------e--EEE---eeCcEEEEEEcCCCCC
Q psy2166 706 EGEIAHFEASLIPVGDQ------TMTVEFLYNG-----K-PI-E-ASHR------I--RTV---HAFGMVVLEILGTKIE 760 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p------~~~v~W~~~g-----~-~l-~-~~~~------~--~~~---~~~~~~~L~i~~v~~~ 760 (805)
.|+.|+|.|... ..+ .+.|.|+|.. . .+ . .+.. + +.. ...+...|+|.+++.+
T Consensus 1 ~G~~V~L~C~~~--~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~s 78 (106)
T cd05714 1 LGGNVTLPCRFH--LEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLE 78 (106)
T ss_pred CCCCEEEeEEeE--CCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHH
Confidence 489999999998 543 4699999962 1 11 0 1111 1 111 1245678999999999
Q ss_pred CCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 761 DTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 761 d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
|+|.|.|.+.|..+..+..++|.|+.
T Consensus 79 D~G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 79 DSGRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred HCEEEEEEEEcCCCceEEEEEEEEEE
Confidence 99999999999988889999999864
|
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. |
| >cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP) | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.8e-07 Score=78.17 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=58.3
Q ss_pred CCCeEEEEEEEeecCCC------CeEEEEEECCE------E-c-c----------CCCCeEEEe-eCcEEEEEEcCCCCC
Q psy2166 706 EGEIAHFEASLIPVGDQ------TMTVEFLYNGK------P-I-E----------ASHRIRTVH-AFGMVVLEILGTKIE 760 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p------~~~v~W~~~g~------~-l-~----------~~~~~~~~~-~~~~~~L~i~~v~~~ 760 (805)
.|++|+|.|... ..| ...|.|+|... . + . -..|+.+.. ..+...|+|.+++.+
T Consensus 1 ~G~~vtL~C~~~--~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~ 78 (106)
T cd05877 1 RGGNVTLPCRYH--YEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLE 78 (106)
T ss_pred CCCcEEEEeEeE--CCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChH
Confidence 489999999987 543 35799999531 0 1 0 013443322 134568999999999
Q ss_pred CCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 761 DTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 761 d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
|+|.|.|.+.|..|..+..++|.|..
T Consensus 79 DsG~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 79 DYGRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred HCEEEEEEEEecccceEEEEEEEEEE
Confidence 99999999999999999999888864
|
Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-07 Score=80.13 Aligned_cols=73 Identities=19% Similarity=0.266 Sum_probs=56.2
Q ss_pred CcccccCCCCeEEEEEEEeecCCCCeEEEEEECCE---Ec-----------cCCCCeEEEee--CcEEEEEEcCCCCCCC
Q psy2166 699 QHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGK---PI-----------EASHRIRTVHA--FGMVVLEILGTKIEDT 762 (805)
Q Consensus 699 ~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~---~l-----------~~~~~~~~~~~--~~~~~L~i~~v~~~d~ 762 (805)
..+ .+.+|++++|.|.+. +.+...+.|+|... +. ....|+.+..+ .+.+.|+|.+++.+|+
T Consensus 6 ~~v-~~~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds 82 (109)
T cd04983 6 QSL-SVQEGENVTLNCNYS--TSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS 82 (109)
T ss_pred Cce-EEcCCCCEEEEEEEC--CCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC
Confidence 344 899999999999998 66888999998431 00 12356655443 3678999999999999
Q ss_pred EEEEEEEEcCCc
Q psy2166 763 GVYTCRATNKWG 774 (805)
Q Consensus 763 G~Y~C~a~N~~G 774 (805)
|.|.|.+.+..|
T Consensus 83 G~Y~C~~~~~~~ 94 (109)
T cd04983 83 AVYFCALSESGG 94 (109)
T ss_pred EEEEEEEecCCC
Confidence 999999998654
|
IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.4e-07 Score=77.02 Aligned_cols=74 Identities=12% Similarity=0.140 Sum_probs=55.5
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEE
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAW 144 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 144 (805)
+|.+...+ ...|.+|++|+|.|... .+...+.|+|+|...... + ....+....|.|.+++.+|+|.|+|.+.
T Consensus 2 kP~L~a~p--~~vV~~G~~VtL~C~~~---~~~~~f~l~k~g~~~~~~-~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~ 73 (91)
T cd05751 2 KPSLWAEP--SSVVPLGKPVTLRCQGP---YGAVEYRLYREGSTFAVK-K--PPEPQNKAKFFIPSMKREHAGRYRCYYR 73 (91)
T ss_pred CCEEEecC--CCccCCCCcEEEEEecC---CCCCEEEEEECCCCcccc-c--cCCCceeEEEEccCCChhHCEEEEEEEE
Confidence 45555544 35789999999999875 667789999998754421 1 1122344579999999999999999998
Q ss_pred eC
Q psy2166 145 NL 146 (805)
Q Consensus 145 n~ 146 (805)
+.
T Consensus 74 ~~ 75 (91)
T cd05751 74 SG 75 (91)
T ss_pred CC
Confidence 86
|
Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2), |
| >cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.3e-07 Score=79.32 Aligned_cols=74 Identities=15% Similarity=0.191 Sum_probs=57.0
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEECCE--e-c-----------CCCCceEEEec--CcEEEEEEcccccCC
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGK--P-L-----------ELGSRFKTTAD--FGFVTLDLTEVYDRD 135 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~--~-i-----------~~~~~~~~~~~--~~~~~L~I~~~~~~D 135 (805)
.+..+.+.+|++|+|.|.+. +.+...+.|+|... . . ...+|+.+..+ .+.++|.|.+++.+|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D 81 (109)
T cd04983 4 SPQSLSVQEGENVTLNCNYS--TSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSD 81 (109)
T ss_pred cCCceEEcCCCCEEEEEEEC--CCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHH
Confidence 44467899999999999998 44777999998431 1 0 13357766543 378899999999999
Q ss_pred CeEEEEEEEeCC
Q psy2166 136 QGIYTCRAWNLA 147 (805)
Q Consensus 136 ~G~Y~C~a~n~~ 147 (805)
+|.|.|.+.+..
T Consensus 82 sG~Y~C~~~~~~ 93 (109)
T cd04983 82 SAVYFCALSESG 93 (109)
T ss_pred CEEEEEEEecCC
Confidence 999999998754
|
IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.5e-07 Score=70.16 Aligned_cols=75 Identities=12% Similarity=0.113 Sum_probs=55.0
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCc---EEEEEEcCCCCCCCEEEEEEEEcCCc-cEEEEEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG---MVVLEILGTKIEDTGVYTCRATNKWG-QAEISVNLECV 785 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~G-~~~~~~~l~V~ 785 (805)
+.|.|.+. .+.|.+.|+|+|+|+++...........++ .++|.|..-..||+..|+|+|.|+.= ..+.+..|.|.
T Consensus 2 ~~L~C~s~-gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAM-ASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEec-CCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 68999998 467999999999999997653322122222 46799988788888999999999753 34555566664
|
Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG) | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.3e-07 Score=76.11 Aligned_cols=76 Identities=26% Similarity=0.329 Sum_probs=53.7
Q ss_pred CCeEEEEEEEeecCCCC---eEEEEEECC-----------EEccC------CCCeEEEe---eCcEEEEEEcCCCCCCCE
Q psy2166 707 GEIAHFEASLIPVGDQT---MTVEFLYNG-----------KPIEA------SHRIRTVH---AFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~---~~v~W~~~g-----------~~l~~------~~~~~~~~---~~~~~~L~i~~v~~~d~G 763 (805)
|++|+|.|... .... ..|.|+|.. ..... ..|+.+.. ..+..+|+|.+++.+|+|
T Consensus 1 G~~v~L~C~~~--~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G 78 (100)
T cd05713 1 GEDAELPCHLS--PKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEG 78 (100)
T ss_pred CCcEEEEeEEc--CCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCE
Confidence 78999999986 2221 368888743 11110 13444322 235678999999999999
Q ss_pred EEEEEEEcCCccEEEEEEEEE
Q psy2166 764 VYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 764 ~Y~C~a~N~~G~~~~~~~l~V 784 (805)
.|+|.+.|..|..+..+.|+|
T Consensus 79 ~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 79 LYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEEEecCCcEEEEEEEEEE
Confidence 999999998888777777776
|
Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM). |
| >cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.4e-07 Score=76.45 Aligned_cols=80 Identities=14% Similarity=0.153 Sum_probs=56.6
Q ss_pred CCCeEEEEEEEeecCCC----------CeEEEEEEC--CE---Ecc-----------CCCCeEEEe---eCcEEEEEEcC
Q psy2166 706 EGEIAHFEASLIPVGDQ----------TMTVEFLYN--GK---PIE-----------ASHRIRTVH---AFGMVVLEILG 756 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p----------~~~v~W~~~--g~---~l~-----------~~~~~~~~~---~~~~~~L~i~~ 756 (805)
.|++++|.|.......+ .+.|.|+|- |+ .+. -.+|+.+.. ..+...|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 48999999999721111 469999983 21 110 013555543 33567899999
Q ss_pred CCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 757 TKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 757 v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
++.+|+|.|.|.+.+.....+..+.|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999999877777777777764
|
Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd00099 IgV Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.7e-07 Score=78.35 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=54.6
Q ss_pred ccCCCCeEEEEEEEeecCC-CCeEEEEEECCE-----Ec------------cCCCCeEEEeeC--cEEEEEEcCCCCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGD-QTMTVEFLYNGK-----PI------------EASHRIRTVHAF--GMVVLEILGTKIEDT 762 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~-p~~~v~W~~~g~-----~l------------~~~~~~~~~~~~--~~~~L~i~~v~~~d~ 762 (805)
.+.+|++++|.|.+. +. +...+.|+|... .+ ....|+.+..+. +.+.|+|.+++.+|+
T Consensus 2 ~v~~G~~v~L~C~~~--~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~ 79 (105)
T cd00099 2 SVSEGESVTLSCTYS--GSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDS 79 (105)
T ss_pred eecCCCCEEEEEEEe--CCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHC
Confidence 688999999999998 65 778999998432 11 123455555444 678999999999999
Q ss_pred EEEEEEEEcCCc
Q psy2166 763 GVYTCRATNKWG 774 (805)
Q Consensus 763 G~Y~C~a~N~~G 774 (805)
|.|.|.+.+..+
T Consensus 80 G~Y~C~v~~~~~ 91 (105)
T cd00099 80 AVYYCAVSLSGG 91 (105)
T ss_pred EEEEEEEecCCC
Confidence 999999998775
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.6e-07 Score=75.31 Aligned_cols=77 Identities=18% Similarity=0.135 Sum_probs=53.3
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEc--------c-----------CCCCeEEEeeCcEEEEEEcCCCCCCCE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI--------E-----------ASHRIRTVHAFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l--------~-----------~~~~~~~~~~~~~~~L~i~~v~~~d~G 763 (805)
.+.+|+.+.|.|.-. ..+...++|+|..... . .++|..+..++ +|.|.+++.+|+|
T Consensus 9 ~~~~G~~V~L~v~~~--p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng---SL~I~~v~~~D~G 83 (105)
T cd05774 9 QVAEGENVLLLVHNL--PENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG---SLLIQNVTQKDTG 83 (105)
T ss_pred cccCCCCEEEEecCC--CCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC---cEEEecCCcccCE
Confidence 789999999999843 2333499999963110 0 12344433333 6999999999999
Q ss_pred EEEEEEEcCCc-cEEEEEEEEE
Q psy2166 764 VYTCRATNKWG-QAEISVNLEC 784 (805)
Q Consensus 764 ~Y~C~a~N~~G-~~~~~~~l~V 784 (805)
.|+|.+.|..+ .....++|.|
T Consensus 84 ~Y~~~v~~~~~~~~~~~v~l~V 105 (105)
T cd05774 84 FYTLQTITTNFQVEQATVHLQV 105 (105)
T ss_pred EEEEEEEeCCccEEEEEEEEEC
Confidence 99999999873 5555555543
|
IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D |
| >cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0) | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.1e-07 Score=76.69 Aligned_cols=81 Identities=17% Similarity=0.177 Sum_probs=56.6
Q ss_pred ccCCCCeEEEEEEEeecC--CCCeEEEEE---------------ECCEEcc-CC----CCeEEEe--eCcEEEEEEcCCC
Q psy2166 703 NLSEGEIAHFEASLIPVG--DQTMTVEFL---------------YNGKPIE-AS----HRIRTVH--AFGMVVLEILGTK 758 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g--~p~~~v~W~---------------~~g~~l~-~~----~~~~~~~--~~~~~~L~i~~v~ 758 (805)
.+..|+.++|.|..+... .+...|+|. ++|+... .. +|+.+.. ..+..+|.|.+++
T Consensus 9 ~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv~ 88 (116)
T cd05879 9 YGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNLD 88 (116)
T ss_pred EEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccCC
Confidence 789999999999998221 245699993 3555443 11 3554432 2456789999999
Q ss_pred CCCCEEEEEEEEcCCccEEEEEEEE
Q psy2166 759 IEDTGVYTCRATNKWGQAEISVNLE 783 (805)
Q Consensus 759 ~~d~G~Y~C~a~N~~G~~~~~~~l~ 783 (805)
.+|.|.|+|.+.|.-+......++.
T Consensus 89 ~sD~G~Y~C~v~n~p~~~~~~~~~~ 113 (116)
T cd05879 89 YTDNGTFTCDVKNPPDIVGKSSQVT 113 (116)
T ss_pred cccCEEEEEEEEcCCCcCCceeEEE
Confidence 9999999999999876443334333
|
Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. |
| >cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.2e-07 Score=73.82 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=55.1
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEECCE-----ec--------------CCCCceEEEecCcEEEEEEcccccCCC
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGK-----PL--------------ELGSRFKTTADFGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~-----~i--------------~~~~~~~~~~~~~~~~L~I~~~~~~D~ 136 (805)
..+.+|++++|.|... +.....+.|+|... .| ...+|..+..++ +|.|.+++.+|+
T Consensus 8 ~~~~~G~~V~L~v~~~--p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng---SL~I~~v~~~D~ 82 (105)
T cd05774 8 PQVAEGENVLLLVHNL--PENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG---SLLIQNVTQKDT 82 (105)
T ss_pred CcccCCCCEEEEecCC--CCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC---cEEEecCCcccC
Confidence 3788999999999865 45666999999521 11 023455666555 899999999999
Q ss_pred eEEEEEEEeCC-eeEEEEEEE
Q psy2166 137 GIYTCRAWNLA-GETFTSTTI 156 (805)
Q Consensus 137 G~Y~C~a~n~~-g~~~~~~~l 156 (805)
|.|.|.+.+.. ...+....+
T Consensus 83 G~Y~~~v~~~~~~~~~~~v~l 103 (105)
T cd05774 83 GFYTLQTITTNFQVEQATVHL 103 (105)
T ss_pred EEEEEEEEeCCccEEEEEEEE
Confidence 99999999876 334444444
|
IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D |
| >cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain | Back alignment and domain information |
|---|
Probab=98.50 E-value=4.7e-07 Score=77.30 Aligned_cols=72 Identities=17% Similarity=0.216 Sum_probs=54.6
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEECC--EecC----------------CCCceEEEecC-cEEEEEEcccc
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG--KPLE----------------LGSRFKTTADF-GFVTLDLTEVY 132 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g--~~i~----------------~~~~~~~~~~~-~~~~L~I~~~~ 132 (805)
.+..+.+.+|++++|.|.+. + +...+.|||.. +.+. ..+|+.+..+. ..++|.|.+++
T Consensus 4 ~p~~~~v~~G~~v~l~C~~~--~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~ 80 (110)
T cd05899 4 SPRYLIKGRGQSVTLRCSQT--S-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAE 80 (110)
T ss_pred CCCceEEcCCCcEEEEEEEC--C-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCC
Confidence 34467899999999999998 3 56789999943 1110 13466665543 56799999999
Q ss_pred cCCCeEEEEEEEeC
Q psy2166 133 DRDQGIYTCRAWNL 146 (805)
Q Consensus 133 ~~D~G~Y~C~a~n~ 146 (805)
.+|+|.|.|.+.+.
T Consensus 81 ~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 81 PEDSAVYLCASSLG 94 (110)
T ss_pred hhhCEEEEEEeeCC
Confidence 99999999999765
|
IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP) | Back alignment and domain information |
|---|
Probab=98.50 E-value=9.8e-07 Score=74.80 Aligned_cols=80 Identities=11% Similarity=0.132 Sum_probs=56.5
Q ss_pred CCCcEEEEEEEecCC----CCCceEEEEECCE----e----cC----------CCCceEEEec-CcEEEEEEcccccCCC
Q psy2166 80 EAQPLHLEAQVEPKN----DPNLKIEWIFNGK----P----LE----------LGSRFKTTAD-FGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 80 ~G~~v~L~C~~~~~~----~p~~~v~W~k~g~----~----i~----------~~~~~~~~~~-~~~~~L~I~~~~~~D~ 136 (805)
.|++|+|+|...... .....|.|+|... . +. ...|+.+... .+..+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 489999999987321 2356799999531 0 11 1235554322 3456899999999999
Q ss_pred eEEEEEEEeCCeeEEEEEEEEEe
Q psy2166 137 GIYTCRAWNLAGETFTSTTIYCS 159 (805)
Q Consensus 137 G~Y~C~a~n~~g~~~~~~~l~V~ 159 (805)
|.|+|.+.+..+.......|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEE
Confidence 99999999987777777777664
|
Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.6e-06 Score=72.43 Aligned_cols=76 Identities=18% Similarity=0.256 Sum_probs=54.0
Q ss_pred CeEEEEEEEeecCCC---CeEEEEEECCEE---------------ccC--CCCeEEEeeC-cEEEEEEcCCCCCCCEEEE
Q psy2166 708 EIAHFEASLIPVGDQ---TMTVEFLYNGKP---------------IEA--SHRIRTVHAF-GMVVLEILGTKIEDTGVYT 766 (805)
Q Consensus 708 ~~~~l~C~~~~~g~p---~~~v~W~~~g~~---------------l~~--~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~ 766 (805)
++|+|.|... ..+ ...|.|+|.... +.+ ..|+.+..+. +...|+|.+++.+|+|.|.
T Consensus 1 ~~v~L~C~~~--~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~ 78 (98)
T cd05718 1 ESVTLECSFP--VPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYI 78 (98)
T ss_pred CCEEEEeEee--CCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEE
Confidence 4799999998 443 457999995421 111 1222222211 4578999999999999999
Q ss_pred EEEEc-CCccEEEEEEEEEE
Q psy2166 767 CRATN-KWGQAEISVNLECV 785 (805)
Q Consensus 767 C~a~N-~~G~~~~~~~l~V~ 785 (805)
|.+.+ +.|.....+.|+|.
T Consensus 79 C~v~~~~~g~~~~~~~l~V~ 98 (98)
T cd05718 79 CEFATFPQGNRQKVTTLTVL 98 (98)
T ss_pred EEEEeCCCCcEEEEEEEEeC
Confidence 99975 77899998888873
|
Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c |
| >cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG) | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-06 Score=73.17 Aligned_cols=78 Identities=18% Similarity=0.291 Sum_probs=53.2
Q ss_pred CCcEEEEEEEecC-CCCCceEEEEECC--Eec---------C------CCCceEEEe---cCcEEEEEEcccccCCCeEE
Q psy2166 81 AQPLHLEAQVEPK-NDPNLKIEWIFNG--KPL---------E------LGSRFKTTA---DFGFVTLDLTEVYDRDQGIY 139 (805)
Q Consensus 81 G~~v~L~C~~~~~-~~p~~~v~W~k~g--~~i---------~------~~~~~~~~~---~~~~~~L~I~~~~~~D~G~Y 139 (805)
|++|+|+|..... ......|.|+|.. ..+ . ..+|+.+.. ..+..+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 7899999998632 1223468888743 111 1 113444432 23567899999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEE
Q psy2166 140 TCRAWNLAGETFTSTTIYC 158 (805)
Q Consensus 140 ~C~a~n~~g~~~~~~~l~V 158 (805)
+|.+.+..+..+....|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999987776666666665
|
Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM). |
| >cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG) | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-06 Score=73.63 Aligned_cols=79 Identities=18% Similarity=0.191 Sum_probs=57.4
Q ss_pred CCCeEEEEEEEeecCCC----------CeEEEEEEC--CEE---c--------cC---CCCeEEE---eeCcEEEEEEcC
Q psy2166 706 EGEIAHFEASLIPVGDQ----------TMTVEFLYN--GKP---I--------EA---SHRIRTV---HAFGMVVLEILG 756 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p----------~~~v~W~~~--g~~---l--------~~---~~~~~~~---~~~~~~~L~i~~ 756 (805)
.|+.++|.|... ..+ ...|.|+|. ++. + .. .+|+.+. .+.+...|+|.+
T Consensus 1 ~G~~V~LpC~~~--~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~ 78 (110)
T cd05878 1 LSSSVLLPCYFT--LPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISR 78 (110)
T ss_pred CCCCEEEeeEee--CCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECC
Confidence 489999999997 433 367999984 211 0 00 1243332 224567899999
Q ss_pred CCCCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 757 TKIEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 757 v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
++.+|+|.|.|.+....+..+..++|.|..
T Consensus 79 l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 79 LRSSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred CChhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 999999999999999877888888888864
|
Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi |
| >cd00099 IgV Immunoglobulin variable domain (IgV) | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.2e-07 Score=76.08 Aligned_cols=71 Identities=21% Similarity=0.309 Sum_probs=54.0
Q ss_pred eecCCCcEEEEEEEecCCCCCceEEEEECCE-----ec------------CCCCceEEEecC--cEEEEEEcccccCCCe
Q psy2166 77 KLGEAQPLHLEAQVEPKNDPNLKIEWIFNGK-----PL------------ELGSRFKTTADF--GFVTLDLTEVYDRDQG 137 (805)
Q Consensus 77 ~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~-----~i------------~~~~~~~~~~~~--~~~~L~I~~~~~~D~G 137 (805)
.+.+|++++|.|.+... .+...+.|+|... .+ ...+|+.+..+. +.++|+|.+++.+|+|
T Consensus 2 ~v~~G~~v~L~C~~~~~-~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G 80 (105)
T cd00099 2 SVSEGESVTLSCTYSGS-FSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA 80 (105)
T ss_pred eecCCCCEEEEEEEeCC-cCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence 57899999999999832 2677899998422 11 123466665554 6789999999999999
Q ss_pred EEEEEEEeCCe
Q psy2166 138 IYTCRAWNLAG 148 (805)
Q Consensus 138 ~Y~C~a~n~~g 148 (805)
.|.|.+.+..+
T Consensus 81 ~Y~C~v~~~~~ 91 (105)
T cd00099 81 VYYCAVSLSGG 91 (105)
T ss_pred EEEEEEecCCC
Confidence 99999987654
|
IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.6e-07 Score=76.83 Aligned_cols=69 Identities=17% Similarity=0.225 Sum_probs=52.6
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECC--EEcc----------------CCCCeEEEeeC-cEEEEEEcCCCCCCCE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNG--KPIE----------------ASHRIRTVHAF-GMVVLEILGTKIEDTG 763 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g--~~l~----------------~~~~~~~~~~~-~~~~L~i~~v~~~d~G 763 (805)
.+.+|++++|.|.+. + +...+.|||.. +.+. ...++.+..+. ..+.|.|.+++.+|+|
T Consensus 9 ~v~~G~~v~l~C~~~--~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg 85 (110)
T cd05899 9 IKGRGQSVTLRCSQT--S-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSA 85 (110)
T ss_pred EEcCCCcEEEEEEEC--C-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCE
Confidence 899999999999998 6 77899999842 1110 12455544333 5678999999999999
Q ss_pred EEEEEEEcCCc
Q psy2166 764 VYTCRATNKWG 774 (805)
Q Consensus 764 ~Y~C~a~N~~G 774 (805)
.|.|.+.+..|
T Consensus 86 ~Y~Ca~~~~~~ 96 (110)
T cd05899 86 VYLCASSLGGG 96 (110)
T ss_pred EEEEEeeCCCC
Confidence 99999988643
|
IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide. |
| >cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.4e-07 Score=75.13 Aligned_cols=74 Identities=15% Similarity=0.288 Sum_probs=54.8
Q ss_pred cCCCCceecCCCcEEEEEEEecCCCC-CceEEEEECC--Ee---c---------CCCCceEEEecCcEEEEEEcccccCC
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPKNDP-NLKIEWIFNG--KP---L---------ELGSRFKTTADFGFVTLDLTEVYDRD 135 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~~~p-~~~v~W~k~g--~~---i---------~~~~~~~~~~~~~~~~L~I~~~~~~D 135 (805)
..+..+.+.+|++|+|.|.+.. .. ...+.|||.. +. + ....|+.....+..+.|+|.+++.+|
T Consensus 5 Q~p~~~~v~~G~~v~L~C~~~~--~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D 82 (106)
T cd04980 5 QSPATLSVSPGESATISCKASQ--SVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED 82 (106)
T ss_pred ECCCcEEECCCCCEEEEEEECC--CCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence 3444678999999999999873 33 5679999832 11 1 01246776666677889999999999
Q ss_pred CeEEEEEEEeC
Q psy2166 136 QGIYTCRAWNL 146 (805)
Q Consensus 136 ~G~Y~C~a~n~ 146 (805)
+|.|.|.+.+.
T Consensus 83 sg~Y~Ca~~~~ 93 (106)
T cd04980 83 AAVYYCQQYGT 93 (106)
T ss_pred CEEEEEEEeCC
Confidence 99999998653
|
IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain | Back alignment and domain information |
|---|
Probab=98.45 E-value=9.1e-07 Score=74.93 Aligned_cols=68 Identities=18% Similarity=0.197 Sum_probs=52.0
Q ss_pred ccCCCCeEEEEEEEeecCCC-CeEEEEEECC--E---Ecc---------CCCCeEEEeeCcEEEEEEcCCCCCCCEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQ-TMTVEFLYNG--K---PIE---------ASHRIRTVHAFGMVVLEILGTKIEDTGVYTC 767 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p-~~~v~W~~~g--~---~l~---------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 767 (805)
.+.+|++++|.|.+. +.. ...+.|+|.. + .+. ...++........+.|+|.+++.+|+|.|.|
T Consensus 11 ~v~~G~~v~L~C~~~--~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~C 88 (106)
T cd04980 11 SVSPGESATISCKAS--QSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYC 88 (106)
T ss_pred EECCCCCEEEEEEEC--CCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEE
Confidence 889999999999997 555 5789999832 1 111 1235655555667889999999999999999
Q ss_pred EEEcC
Q psy2166 768 RATNK 772 (805)
Q Consensus 768 ~a~N~ 772 (805)
.+.|.
T Consensus 89 a~~~~ 93 (106)
T cd04980 89 QQYGT 93 (106)
T ss_pred EEeCC
Confidence 99764
|
IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0) | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.9e-06 Score=73.29 Aligned_cols=76 Identities=14% Similarity=0.233 Sum_probs=54.2
Q ss_pred CCCceecCCCcEEEEEEEecCC--CCCceEEEEE---------------CCEecC-C----CCceEEEec--CcEEEEEE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKN--DPNLKIEWIF---------------NGKPLE-L----GSRFKTTAD--FGFVTLDL 128 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~--~p~~~v~W~k---------------~g~~i~-~----~~~~~~~~~--~~~~~L~I 128 (805)
++.+.+..|+.++|.|...... .+...|.|.+ +|+... . .+|+....+ .+..+|.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 3467889999999999998431 3567999933 444332 1 125544332 35568999
Q ss_pred cccccCCCeEEEEEEEeCCe
Q psy2166 129 TEVYDRDQGIYTCRAWNLAG 148 (805)
Q Consensus 129 ~~~~~~D~G~Y~C~a~n~~g 148 (805)
.+++.+|.|.|+|.+.|..+
T Consensus 85 ~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 85 HNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred ccCCcccCEEEEEEEEcCCC
Confidence 99999999999999998754
|
Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. |
| >cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)) | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.3e-06 Score=66.68 Aligned_cols=75 Identities=13% Similarity=0.124 Sum_probs=52.4
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeC---CEEEEEEccCCCCCCEEEEEEEEcCCcc-eEEEEEEEEe
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF---GIVILDILYCYEENSGVYECRATNKYGS-DVTKASLKCV 589 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~ 589 (805)
+.|.|.+.+ ++|.+.|+|+|+|+++............ ..++|.|..-..+|...|+|.|.|..-. ......|.|.
T Consensus 2 ~~L~C~s~g-SkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMA-SKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecC-CCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 689999998 7999999999999999764322111111 2557888765556666999999986532 3444555554
|
Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition. |
| >cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-06 Score=75.97 Aligned_cols=73 Identities=19% Similarity=0.407 Sum_probs=55.6
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec-----------------CCCCceEEEecC--cEEEEEEccc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL-----------------ELGSRFKTTADF--GFVTLDLTEV 131 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i-----------------~~~~~~~~~~~~--~~~~L~I~~~ 131 (805)
+..+.+.+|++|+|.|.+.....+.+.+.|||. |... ....|+.+..+. ..+.|+|.++
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 445688899999999999732256778999994 2211 023577777665 6789999999
Q ss_pred ccCCCeEEEEEEEe
Q psy2166 132 YDRDQGIYTCRAWN 145 (805)
Q Consensus 132 ~~~D~G~Y~C~a~n 145 (805)
+.+|+|.|.|.+..
T Consensus 85 ~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EKEDSATYYCAYWE 98 (116)
T ss_pred CHHHCEEEEEEEec
Confidence 99999999999964
|
IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-06 Score=71.46 Aligned_cols=72 Identities=7% Similarity=0.020 Sum_probs=52.6
Q ss_pred ccCCCCeEEEEEEEeecCCCCeE--EEEEECCEEccCCCCeEE--EeeCcEEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMT--VEFLYNGKPIEASHRIRT--VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~--v~W~~~g~~l~~~~~~~~--~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
.+.+|+.++|.|.+. .+.|.+. |+|||+++.+........ .......+|.+..-+.||.-.|+|+|.+.++.
T Consensus 12 ~~~eG~~~tL~C~v~-g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 12 WQPVGKNYTLQCDVP-GVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRP 87 (100)
T ss_pred cccCCCcEEEEEEEc-CcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCc
Confidence 678999999999998 3678886 799999999865422110 11223457888766666666999999998764
|
Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites. |
| >cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.4e-06 Score=72.40 Aligned_cols=80 Identities=18% Similarity=0.268 Sum_probs=55.5
Q ss_pred CCCcEEEEEEEecCC----CCCceEEEEECC-----E-ec--CCCC----------ceEE-EecCcEEEEEEcccccCCC
Q psy2166 80 EAQPLHLEAQVEPKN----DPNLKIEWIFNG-----K-PL--ELGS----------RFKT-TADFGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 80 ~G~~v~L~C~~~~~~----~p~~~v~W~k~g-----~-~i--~~~~----------~~~~-~~~~~~~~L~I~~~~~~D~ 136 (805)
.|++|+|+|...... ...+.|.|+|.. . .+ ..+. |+.. ....+..+|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 489999999988421 236799999962 1 11 0111 1111 1133567999999999999
Q ss_pred eEEEEEEEeCCeeEEEEEEEEEe
Q psy2166 137 GIYTCRAWNLAGETFTSTTIYCS 159 (805)
Q Consensus 137 G~Y~C~a~n~~g~~~~~~~l~V~ 159 (805)
|.|.|.+.+..+.......|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEE
Confidence 99999999887766777777765
|
Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. |
| >cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.8e-06 Score=72.73 Aligned_cols=80 Identities=19% Similarity=0.283 Sum_probs=54.5
Q ss_pred CCCcEEEEEEEecCCCC----------CceEEEEEC--CEec--------------CCCCceEEEe---cCcEEEEEEcc
Q psy2166 80 EAQPLHLEAQVEPKNDP----------NLKIEWIFN--GKPL--------------ELGSRFKTTA---DFGFVTLDLTE 130 (805)
Q Consensus 80 ~G~~v~L~C~~~~~~~p----------~~~v~W~k~--g~~i--------------~~~~~~~~~~---~~~~~~L~I~~ 130 (805)
.|++|+|+|.......+ .+.|.|+|- |++. ...+|+.+.. ..+..+|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 48999999999842111 468999983 2111 1113666644 33567999999
Q ss_pred cccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy2166 131 VYDRDQGIYTCRAWNLAGETFTSTTIYCS 159 (805)
Q Consensus 131 ~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 159 (805)
++.+|+|.|+|.+.+..........|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999999765455555555553
|
Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes. |
| >cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG) | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.2e-06 Score=72.62 Aligned_cols=80 Identities=14% Similarity=0.256 Sum_probs=55.7
Q ss_pred CCCcEEEEEEEecCCCC--------CceEEEEEC--CEecC--------------CCCceEEE---ecCcEEEEEEcccc
Q psy2166 80 EAQPLHLEAQVEPKNDP--------NLKIEWIFN--GKPLE--------------LGSRFKTT---ADFGFVTLDLTEVY 132 (805)
Q Consensus 80 ~G~~v~L~C~~~~~~~p--------~~~v~W~k~--g~~i~--------------~~~~~~~~---~~~~~~~L~I~~~~ 132 (805)
.|++|+|+|.......+ ...|.|+|. ++... ..+|+.+. .+.+..+|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 38999999999843111 367999984 21110 11355543 23456789999999
Q ss_pred cCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy2166 133 DRDQGIYTCRAWNLAGETFTSTTIYCS 159 (805)
Q Consensus 133 ~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 159 (805)
.+|+|.|.|.+.......+....|.|.
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 999999999999876566666667664
|
Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi |
| >cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.5e-06 Score=72.35 Aligned_cols=68 Identities=18% Similarity=0.223 Sum_probs=52.7
Q ss_pred ccCCCCeEEEEEEEeecCC--CCeEEEEEECC--EEc------------cCCCCeEEEeeCcEEEEEEcCCCCCCCEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGD--QTMTVEFLYNG--KPI------------EASHRIRTVHAFGMVVLEILGTKIEDTGVYT 766 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~--p~~~v~W~~~g--~~l------------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 766 (805)
.+.+|++++|.|.+. +. ....+.|||-. ..+ ....++....+.+...|+|.+++.+|+|.|.
T Consensus 2 ~v~~G~~v~l~C~~~--~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~ 79 (98)
T cd04984 2 SVSPGETVTITCTGS--SGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYY 79 (98)
T ss_pred ccCCCCCEEEEEEEc--CCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEE
Confidence 688999999999987 54 55679999822 111 1134677667777889999999999999999
Q ss_pred EEEEcC
Q psy2166 767 CRATNK 772 (805)
Q Consensus 767 C~a~N~ 772 (805)
|.+.+.
T Consensus 80 C~~~~~ 85 (98)
T cd04984 80 CQVWDS 85 (98)
T ss_pred EEEccC
Confidence 999764
|
IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.5e-06 Score=72.35 Aligned_cols=70 Identities=14% Similarity=0.342 Sum_probs=52.6
Q ss_pred eecCCCcEEEEEEEecCCCCCceEEEEEC--CEec------------CCCCceEEEecCcEEEEEEcccccCCCeEEEEE
Q psy2166 77 KLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 77 ~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
.|.+|++|+|.|...........+.|||- |+.. ....|+....++..++|+|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 57899999999998732114567999983 2111 113478877777888999999999999999999
Q ss_pred EEeC
Q psy2166 143 AWNL 146 (805)
Q Consensus 143 a~n~ 146 (805)
+.+.
T Consensus 82 ~~~~ 85 (98)
T cd04984 82 VWDS 85 (98)
T ss_pred EccC
Confidence 8653
|
IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.3e-06 Score=71.59 Aligned_cols=74 Identities=12% Similarity=0.111 Sum_probs=51.3
Q ss_pred CeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEE
Q psy2166 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 770 (805)
Q Consensus 692 P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 770 (805)
|.|...+.. .|.+|++|+|.|... - +...+.|+|+|...................+.|.+++.+|+|.|.|...
T Consensus 2 P~l~a~p~~--vV~~G~~VTL~C~~~--~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 2 PFLSAHPSP--VVPSGENVTLQCHSD--I-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred CEEEecCCC--ccCCCCeEEEEEecC--C-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 455555543 589999999999875 3 5568999999875332100001112234579999999999999999975
|
IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another. |
| >cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively) | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.2e-06 Score=68.37 Aligned_cols=64 Identities=9% Similarity=0.127 Sum_probs=47.2
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEE-eeCc----EEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTV-HAFG----MVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~-~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
+.|.|.+. .++|.+.|+|+++|+++.... .... .+++ .+.|.+.....+|.+.|+|+|.|....
T Consensus 2 ~~L~C~~~-~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSS-GSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEec-CcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 68999998 356999999999999987543 2222 1222 245777666777888999999998764
|
Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel |
| >cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.5e-06 Score=71.61 Aligned_cols=72 Identities=19% Similarity=0.178 Sum_probs=51.2
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEccC------------------CCCeEEEeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEA------------------SHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~------------------~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
|++|+|.|.+. ..+...|.|+|+...... ..|+.+..+ ..|+|.+++.+|+|.|+|.
T Consensus 1 G~~VtL~c~~~--~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~sL~I~~l~~~DsG~Y~c~ 75 (92)
T cd05741 1 GESVTLPVSNL--PENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN---GSLLIQNLTKEDSGTYTLQ 75 (92)
T ss_pred CCcEEEEcccC--CCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC---ceEEEccCCchhcEEEEEE
Confidence 78999999987 667789999996532110 122333222 4799999999999999999
Q ss_pred EEcCCc-cEEEEEEEE
Q psy2166 769 ATNKWG-QAEISVNLE 783 (805)
Q Consensus 769 a~N~~G-~~~~~~~l~ 783 (805)
+.+..| .....+.|.
T Consensus 76 v~~~~~~~~~~~~~l~ 91 (92)
T cd05741 76 IISTNGVTENAKFFLR 91 (92)
T ss_pred EEcCCCcEEEEEEEEE
Confidence 998875 444444444
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf |
| >cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.6e-06 Score=71.68 Aligned_cols=78 Identities=17% Similarity=0.197 Sum_probs=54.2
Q ss_pred CCCCeEEEEEEEeecC-CCCeEEEEEECCEEcc--C-----------CCCe--EEEeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 705 SEGEIAHFEASLIPVG-DQTMTVEFLYNGKPIE--A-----------SHRI--RTVHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 705 ~~G~~~~l~C~~~~~g-~p~~~v~W~~~g~~l~--~-----------~~~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
..|++|+|.|... . .....|.|+|....+. . ..++ +..-+.....|+|.+++.+|+|.|.|.
T Consensus 2 ~~G~sVtL~c~~~--~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~ 79 (97)
T cd05775 2 ILGGSVTLPLNIP--DGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAE 79 (97)
T ss_pred ccCCeEEEeCCCC--CCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEE
Confidence 4699999999986 3 4567899998653211 0 1111 122234456899999999999999999
Q ss_pred EEcCCccE-EEEEEEEE
Q psy2166 769 ATNKWGQA-EISVNLEC 784 (805)
Q Consensus 769 a~N~~G~~-~~~~~l~V 784 (805)
+.+..|.. ...+.|.|
T Consensus 80 v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 80 INTKNGVTITKEFTLHI 96 (97)
T ss_pred EEcCCCCeEEEEEEEEe
Confidence 99988744 55555655
|
Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region |
| >cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.7e-06 Score=69.97 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=52.7
Q ss_pred eEEEEEEEeecCCC---CeEEEEEEC--CE---Ec---c--------C--CCCeEEEe--eCcEEEEEEcCCCCCCCEEE
Q psy2166 709 IAHFEASLIPVGDQ---TMTVEFLYN--GK---PI---E--------A--SHRIRTVH--AFGMVVLEILGTKIEDTGVY 765 (805)
Q Consensus 709 ~~~l~C~~~~~g~p---~~~v~W~~~--g~---~l---~--------~--~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y 765 (805)
+++|.|... ..+ ...|.|+|. |. .+ . . .+|..+.. ..+...|+|.+++.+|+|.|
T Consensus 2 ~v~L~C~~~--~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY 79 (100)
T cd05888 2 DTRLPCRYN--VSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKY 79 (100)
T ss_pred CEEEEeEEe--cCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEE
Confidence 689999997 333 458999993 21 11 0 0 13555543 23456899999999999999
Q ss_pred EEEEEc-CCccEEEEEEEEE
Q psy2166 766 TCRATN-KWGQAEISVNLEC 784 (805)
Q Consensus 766 ~C~a~N-~~G~~~~~~~l~V 784 (805)
.|.+.| +.|..+..+.|+|
T Consensus 80 ~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 80 KCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEEeCCCCCeeeEEEEEe
Confidence 999999 7887777777776
|
Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult |
| >cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.6e-06 Score=64.62 Aligned_cols=79 Identities=19% Similarity=0.172 Sum_probs=56.7
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTST 154 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~ 154 (805)
+..+..|++++|+|.....+.|.+.|+|.-.+...-.. .. .+..+|.+.++...|+|.++|.+..........+
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~----~~--~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~ 81 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI----LN--QDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKL 81 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee----cc--CCccEEEeceeCcccCCEEEEEEEECceEEEEEe
Confidence 45788999999999997333556699999765442210 01 1223899999999999999999987655566666
Q ss_pred EEEEe
Q psy2166 155 TIYCS 159 (805)
Q Consensus 155 ~l~V~ 159 (805)
.|.|.
T Consensus 82 ~V~Vl 86 (88)
T cd07694 82 DIKVL 86 (88)
T ss_pred eEEEE
Confidence 66664
|
Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA) | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.4e-06 Score=73.18 Aligned_cols=77 Identities=18% Similarity=0.258 Sum_probs=51.3
Q ss_pred CCCCceecCCCcEEEEEEEecCC-C-CCceEEEEEC----CEe--c---------CCCC----ceEEEe--cCcEEEEEE
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKN-D-PNLKIEWIFN----GKP--L---------ELGS----RFKTTA--DFGFVTLDL 128 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~-~-p~~~v~W~k~----g~~--i---------~~~~----~~~~~~--~~~~~~L~I 128 (805)
.+..+.+.+|++++|.|...... . ....|.|++. +.+ + ...+ |+.+.. ..+..+|.|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 45578999999999999987321 1 1346999751 111 1 0111 222221 234568999
Q ss_pred cccccCCCeEEEEEEEeCCe
Q psy2166 129 TEVYDRDQGIYTCRAWNLAG 148 (805)
Q Consensus 129 ~~~~~~D~G~Y~C~a~n~~g 148 (805)
.+++.+|+|.|+|.+.|..+
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred eeCChhhCEEEEEEEEeCCC
Confidence 99999999999999998644
|
Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development. |
| >cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.2e-06 Score=70.33 Aligned_cols=75 Identities=11% Similarity=0.075 Sum_probs=51.4
Q ss_pred CeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEe
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWN 145 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 145 (805)
|.+...+ ...|.+|++|+|.|... .....+.|+|+|...................+.|.+++.+|+|.|+|....
T Consensus 2 P~l~a~p--~~vV~~G~~VTL~C~~~---~~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 2 PFLSAHP--SPVVPSGENVTLQCHSD---IRFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CEEEecC--CCccCCCCeEEEEEecC---CCCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 4444433 45789999999999876 345689999998653321000111122344789999999999999999854
|
IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another. |
| >cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.8e-06 Score=70.09 Aligned_cols=77 Identities=16% Similarity=0.198 Sum_probs=52.5
Q ss_pred CcEEEEEEEecCC-CCCceEEEEECCEe----c-----------CC--CCceEEEecC-cEEEEEEcccccCCCeEEEEE
Q psy2166 82 QPLHLEAQVEPKN-DPNLKIEWIFNGKP----L-----------EL--GSRFKTTADF-GFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 82 ~~v~L~C~~~~~~-~p~~~v~W~k~g~~----i-----------~~--~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
++|+|+|.....+ .....|.|+|.... + .. ..|..+..+. +..+|+|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 5799999998422 13457999995421 0 11 1232222211 456899999999999999999
Q ss_pred EEe-CCeeEEEEEEEEE
Q psy2166 143 AWN-LAGETFTSTTIYC 158 (805)
Q Consensus 143 a~n-~~g~~~~~~~l~V 158 (805)
+.. ..|.......|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 875 5677887777776
|
Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c |
| >cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.2e-06 Score=73.99 Aligned_cols=67 Identities=15% Similarity=0.264 Sum_probs=53.1
Q ss_pred ccCCCCeEEEEEEEeecC--CCCeEEEEEEC--CEEc-----------------cCCCCeEEEeeC--cEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVG--DQTMTVEFLYN--GKPI-----------------EASHRIRTVHAF--GMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g--~p~~~v~W~~~--g~~l-----------------~~~~~~~~~~~~--~~~~L~i~~v~~ 759 (805)
.+.+|++++|.|.+. + .+.+.+.|+|. |..+ ....++.+..+. ..+.|+|.+++.
T Consensus 9 ~~~~G~~v~l~C~~~--~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~ 86 (116)
T cd04982 9 TREESKSVTISCKVS--GIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEK 86 (116)
T ss_pred EeCCCCCEEEEEEEe--CCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCH
Confidence 789999999999997 6 67889999993 2110 013566666665 678999999999
Q ss_pred CCCEEEEEEEEc
Q psy2166 760 EDTGVYTCRATN 771 (805)
Q Consensus 760 ~d~G~Y~C~a~N 771 (805)
+|+|.|.|.+..
T Consensus 87 ~Dsg~Y~C~~~~ 98 (116)
T cd04982 87 EDSATYYCAYWE 98 (116)
T ss_pred HHCEEEEEEEec
Confidence 999999999875
|
IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >PHA02987 Ig domain OX-2-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.2e-06 Score=75.47 Aligned_cols=87 Identities=17% Similarity=0.251 Sum_probs=64.5
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecC----------C--CCceE-EEecCcEEEEEEcccccCCCeEEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLE----------L--GSRFK-TTADFGFVTLDLTEVYDRDQGIYTC 141 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~----------~--~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C 141 (805)
.++|.+|++|+|.|... .+...+.|+|+|....+. + .+|+. +......++|+|.+++.+|+|.|.|
T Consensus 24 ~v~V~ege~VtLsCs~t-~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C 102 (189)
T PHA02987 24 KITVSEHVNVKISCNKT-SSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC 102 (189)
T ss_pred EEEEcCCCCEEEEEecC-CCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence 46889999999999984 245677899999643221 1 13554 4444456789999999999999999
Q ss_pred EEE-eCCe-eEEEEEEEEEeccc
Q psy2166 142 RAW-NLAG-ETFTSTTIYCSTKE 162 (805)
Q Consensus 142 ~a~-n~~g-~~~~~~~l~V~~~~ 162 (805)
... ...| ..+....|+|....
T Consensus 103 ~F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 103 IFNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EEEecCCCCCceeEEEEEEEchh
Confidence 985 4456 77888889987643
|
|
| >cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.6e-06 Score=66.44 Aligned_cols=64 Identities=11% Similarity=0.066 Sum_probs=47.4
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEe-eCc----EEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH-AFG----MVVLEILGTKIEDTGVYTCRATNKWG 774 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~-~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G 774 (805)
++|.|.+. .++|.+.|+|++||+++.......... +++ .+.|.|.....+|...|+|.|.|...
T Consensus 2 ~~LtC~a~-g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSS-GSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEec-CccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 68999998 356999999999999987654322222 222 24577767778888999999999875
|
Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel |
| >cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.9e-06 Score=69.29 Aligned_cols=79 Identities=13% Similarity=0.086 Sum_probs=56.4
Q ss_pred CCCeEEEEEEEeecCCC-------CeEEEEEEC-----CEE------------ccC--CCCeEEEee---CcEEEEEEcC
Q psy2166 706 EGEIAHFEASLIPVGDQ-------TMTVEFLYN-----GKP------------IEA--SHRIRTVHA---FGMVVLEILG 756 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p-------~~~v~W~~~-----g~~------------l~~--~~~~~~~~~---~~~~~L~i~~ 756 (805)
.|+.++|.|... -.| .+.|.|.|- .+. ..+ ..|+.+..+ .+..+|+|.+
T Consensus 1 ~~~~v~LpC~~~--~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~n 78 (110)
T cd05902 1 LSSSVLLPCVFT--LPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSR 78 (110)
T ss_pred CCCcEEEeeEEE--cCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECC
Confidence 388999999976 222 368999984 111 001 134444332 3568999999
Q ss_pred CCCCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 757 TKIEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 757 v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
++.+|+|.|.|.+.......+..++|+|..
T Consensus 79 v~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 79 LRYSDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred CCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999999999777788888888753
|
Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen |
| >cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively) | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.9e-06 Score=66.89 Aligned_cols=66 Identities=14% Similarity=0.163 Sum_probs=46.3
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCC----EEEEEEccCCCCCCEEEEEEEEcCCcce
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG----IVILDILYCYEENSGVYECRATNKYGSD 580 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 580 (805)
++|.|.+.+ +.|.+.++|+++|+++..........+++ .+.|.+.....+|.+.|+|.|.|.....
T Consensus 2 ~~L~C~~~~-~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~ 71 (82)
T cd05761 2 VELTCTSSG-SKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS 71 (82)
T ss_pred EEEEEEecC-cCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence 689999986 67889999999999996443222222222 3346666555566779999999977653
|
Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel |
| >cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.9e-06 Score=67.94 Aligned_cols=75 Identities=20% Similarity=0.257 Sum_probs=52.7
Q ss_pred eEEEEEEEeecCCCC---eEEEEEECC--E--Ec-----------cC--CCCeEEEe-eCcEEEEEEcCCCCCCCEEEEE
Q psy2166 709 IAHFEASLIPVGDQT---MTVEFLYNG--K--PI-----------EA--SHRIRTVH-AFGMVVLEILGTKIEDTGVYTC 767 (805)
Q Consensus 709 ~~~l~C~~~~~g~p~---~~v~W~~~g--~--~l-----------~~--~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C 767 (805)
.++|.|... ...|. ..|.|.|.. . .+ .. .+|+.+.. ..+..+|.|.+++.+|+|.|+|
T Consensus 2 ~v~L~C~f~-~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C 80 (99)
T cd05886 2 DVVLHCSFI-NPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYIC 80 (99)
T ss_pred cEEEEeEee-cCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEE
Confidence 589999997 12222 269999831 1 11 11 13444321 2334689999999999999999
Q ss_pred EEEc-CCccEEEEEEEEE
Q psy2166 768 RATN-KWGQAEISVNLEC 784 (805)
Q Consensus 768 ~a~N-~~G~~~~~~~l~V 784 (805)
.+.| +.|..+..+.|+|
T Consensus 81 ~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 81 EFATFPTGNRESQLNLTV 98 (99)
T ss_pred EEEeCCCCCeEEEEEEEE
Confidence 9999 7999999999988
|
Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is |
| >cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.3e-06 Score=72.73 Aligned_cols=76 Identities=14% Similarity=0.273 Sum_probs=51.2
Q ss_pred CCCceecCCCcEEEEEEEecCCC--CCceEEEEECCE------ec---------C-CCC----ceEEEec--CcEEEEEE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKND--PNLKIEWIFNGK------PL---------E-LGS----RFKTTAD--FGFVTLDL 128 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~--p~~~v~W~k~g~------~i---------~-~~~----~~~~~~~--~~~~~L~I 128 (805)
+..+.+.+|+.++|.|....... ....|.|++... .+ . ... |+.+..+ .+..+|+|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 44678899999999999873211 235799986311 11 0 112 3333222 24578999
Q ss_pred cccccCCCeEEEEEEEeCCe
Q psy2166 129 TEVYDRDQGIYTCRAWNLAG 148 (805)
Q Consensus 129 ~~~~~~D~G~Y~C~a~n~~g 148 (805)
.+++.+|+|.|.|.+.|...
T Consensus 85 ~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 85 HNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eeCCcccCEEEEEEEEeCCC
Confidence 99999999999999998643
|
Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2 |
| >cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.5e-06 Score=68.63 Aligned_cols=70 Identities=11% Similarity=0.107 Sum_probs=50.2
Q ss_pred ccCCCeEEEEEEEeeCCCCCcE--EEEEECCEEccCCCceE--EEeeCCEEEEEEccCCCCCCE-EEEEEEEcCCcc
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLV--VEWFYNGKKLPHGHRYR--TFHDFGIVILDILYCYEENSG-VYECRATNKYGS 579 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~--v~W~~~g~~l~~~~~~~--~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~n~~g~ 579 (805)
+.+|+.++|+|.+.+ +.|.+. +.|+|+++.|....... .......++|++... .+|.| .|+|+|.+..+.
T Consensus 13 ~~eG~~~tL~C~v~g-~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~-r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 13 QPVGKNYTLQCDVPG-VAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVD-REDHGANFSCETELDLRP 87 (100)
T ss_pred ccCCCcEEEEEEEcC-cCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecc-hhhCCcEEEEEEEeccCc
Confidence 789999999999997 788887 79999999996532111 011223456777754 55555 999999987654
|
Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites. |
| >cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.2e-06 Score=69.55 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=47.3
Q ss_pred CCcEEEEEEEecCCCCCceEEEEECCEecC------------------CCCceEEEecCcEEEEEEcccccCCCeEEEEE
Q psy2166 81 AQPLHLEAQVEPKNDPNLKIEWIFNGKPLE------------------LGSRFKTTADFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 81 G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~------------------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
|++|+|.|... ......|.|+|+..... ..+|+.+..+ .+|.|.+++.+|+|.|+|.
T Consensus 1 G~~VtL~c~~~--~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~---~sL~I~~l~~~DsG~Y~c~ 75 (92)
T cd05741 1 GESVTLPVSNL--PENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN---GSLLIQNLTKEDSGTYTLQ 75 (92)
T ss_pred CCcEEEEcccC--CCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC---ceEEEccCCchhcEEEEEE
Confidence 89999999987 46667899999653221 1124444433 4899999999999999999
Q ss_pred EEeCCe
Q psy2166 143 AWNLAG 148 (805)
Q Consensus 143 a~n~~g 148 (805)
+....|
T Consensus 76 v~~~~~ 81 (92)
T cd05741 76 IISTNG 81 (92)
T ss_pred EEcCCC
Confidence 988753
|
Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf |
| >cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA) | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.9e-06 Score=72.66 Aligned_cols=71 Identities=15% Similarity=0.269 Sum_probs=48.9
Q ss_pred ccCCCCeEEEEEEEeecCCC----CeEEEEEEC----CEE--c----c-----CC----CCeEEEe--eCcEEEEEEcCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQ----TMTVEFLYN----GKP--I----E-----AS----HRIRTVH--AFGMVVLEILGT 757 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p----~~~v~W~~~----g~~--l----~-----~~----~~~~~~~--~~~~~~L~i~~v 757 (805)
.+.+|+.++|.|... ..+ ...|.|++. +.+ + . .. .|+.+.. ..+...|.|.++
T Consensus 9 ~~~~G~~v~L~C~~s--~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v 86 (115)
T cd05880 9 EAVNGTDVRLKCTFS--SSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQL 86 (115)
T ss_pred EEEcCCCEEEEEEEE--eCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeC
Confidence 889999999999987 332 357999751 111 1 0 11 1222211 134568999999
Q ss_pred CCCCCEEEEEEEEcCCcc
Q psy2166 758 KIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 758 ~~~d~G~Y~C~a~N~~G~ 775 (805)
+.+|+|.|.|.+.|..+.
T Consensus 87 ~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 87 QPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred ChhhCEEEEEEEEeCCCC
Confidence 999999999999998763
|
Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development. |
| >cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.3e-06 Score=72.75 Aligned_cols=73 Identities=15% Similarity=0.246 Sum_probs=48.8
Q ss_pred ccCCCCeEEEEEEEeecCC--CCeEEEEEECC------EE-c--------c-CC----CCeEEEee--CcEEEEEEcCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGD--QTMTVEFLYNG------KP-I--------E-AS----HRIRTVHA--FGMVVLEILGTK 758 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~--p~~~v~W~~~g------~~-l--------~-~~----~~~~~~~~--~~~~~L~i~~v~ 758 (805)
.+.+|+.++|.|....... ....|.|++.. .. + . .. .|+.+..+ .+.+.|+|.+++
T Consensus 9 ~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 88 (116)
T cd05715 9 YAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHNLQ 88 (116)
T ss_pred EEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEeeCC
Confidence 7889999999999872111 12579998621 01 0 0 11 22222221 235789999999
Q ss_pred CCCCEEEEEEEEcCCcc
Q psy2166 759 IEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 759 ~~d~G~Y~C~a~N~~G~ 775 (805)
.+|+|.|.|.+.|.-+.
T Consensus 89 ~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 89 FTDNGTYTCDVKNPPDI 105 (116)
T ss_pred cccCEEEEEEEEeCCCC
Confidence 99999999999987654
|
Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2 |
| >cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.5e-05 Score=66.93 Aligned_cols=79 Identities=18% Similarity=0.243 Sum_probs=57.7
Q ss_pred CCCeEEEEEEEeecCCC-----------CeEEEEEEC-----CE-----Ec------------cCCCCeEEEee---CcE
Q psy2166 706 EGEIAHFEASLIPVGDQ-----------TMTVEFLYN-----GK-----PI------------EASHRIRTVHA---FGM 749 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p-----------~~~v~W~~~-----g~-----~l------------~~~~~~~~~~~---~~~ 749 (805)
.|++++|.|... -.| ...|+|++- |+ .+ .-..|..+..+ .+.
T Consensus 1 ~~g~v~LPC~f~--~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~ 78 (117)
T cd05901 1 LSGSVVLPCRFS--TLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGD 78 (117)
T ss_pred CCCCEEEeeEEE--ecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCc
Confidence 378999999998 433 248999983 21 11 00124444322 256
Q ss_pred EEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 750 VVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 750 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
.+|+|.+++..|+|.|+|.+.+.....+..++|.|..
T Consensus 79 asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 79 ASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred eEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 7999999999999999999999998999999998863
|
Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA |
| >cd00098 IgC Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.1e-06 Score=69.45 Aligned_cols=71 Identities=24% Similarity=0.269 Sum_probs=50.9
Q ss_pred cCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc-eEE--EeeCC---EEEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 509 KEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR-YRT--FHDFG---IVILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 509 ~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~-~~~--~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
..|+.++|.|.+.++.++.+.++|++||..+..... ... ..++. .+.|.|.....+|.|.|+|.|.|....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 478999999999964333689999999999976543 111 22222 334777766666999999999987654
|
IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions. |
| >PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.9e-06 Score=65.97 Aligned_cols=73 Identities=21% Similarity=0.310 Sum_probs=47.6
Q ss_pred CceecccccccccCCCceEEEEEEEeeCCCC-CeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEE
Q psy2166 203 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ-TMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 281 (805)
Q Consensus 203 p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p-~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 281 (805)
|.+...+... +..+..++|.|.+ .+.+ .+.+.|+ +..... .............|.|.++..+|.|.|+|.|.
T Consensus 2 P~I~~~~~~~--~~~~~~~~l~C~~--~~~~~~~~~~W~-~~~~~~--~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~ 74 (75)
T PF13927_consen 2 PQISVPPPPV--VTSGGSVTLTCSA--EGGPPPPSISWY-DSNPSF--NSNSRGSSSSNSTLTISNVTRSDNGTYTCIAS 74 (75)
T ss_dssp SEEEEESTSE--EETTEEEEEEEEE--SSEESSEEEEEE-TEEEEE--EEEEEEEEEEEEEEEESSCCGGGTEEEEEEEE
T ss_pred CEEEEcCCCc--EeeceeEEEEEEE--ccccCCeEEEEE-ecCCce--eeeeeeccceeeEEEEccCCHHhCcEEEEEEE
Confidence 5555555554 2333349999998 5555 8999999 111111 11111222335689999999999999999998
Q ss_pred c
Q psy2166 282 N 282 (805)
Q Consensus 282 n 282 (805)
|
T Consensus 75 N 75 (75)
T PF13927_consen 75 N 75 (75)
T ss_dssp E
T ss_pred C
Confidence 6
|
... |
| >cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)) | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.3e-06 Score=64.66 Aligned_cols=65 Identities=9% Similarity=0.121 Sum_probs=46.2
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeC-C----EEEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF-G----IVILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~-~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
++|+|.+.+ +.|.+.|+|++||+.|...........+ + .+.|.|.....+|...|+|.|.+....
T Consensus 2 ~~LtC~a~g-~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSG-SKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecC-ccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 689999996 5788999999999998754332222222 2 244666555566778999999987654
|
Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel |
| >cd00098 IgC Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.7e-06 Score=69.09 Aligned_cols=69 Identities=20% Similarity=0.225 Sum_probs=51.4
Q ss_pred CCCCeEEEEEEEeecCC-C-CeEEEEEECCEEccCCCC-e-EEEeeCc----EEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 705 SEGEIAHFEASLIPVGD-Q-TMTVEFLYNGKPIEASHR-I-RTVHAFG----MVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 705 ~~G~~~~l~C~~~~~g~-p-~~~v~W~~~g~~l~~~~~-~-~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
..|+.++|.|.+. |. | .+.|+|++||..+..... . .....++ .+.|.|.....+|.|.|+|.|.|....
T Consensus 11 ~~~~~~~L~C~a~--g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLAT--GFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEe--eEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 4689999999999 65 5 478999999999876643 1 1122222 245778777778999999999997654
|
IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions. |
| >cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.3e-06 Score=70.05 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=54.1
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEe---c---------CCCCceEEEe--cCcEEEEEEcccccCC
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKP---L---------ELGSRFKTTA--DFGFVTLDLTEVYDRD 135 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~---i---------~~~~~~~~~~--~~~~~~L~I~~~~~~D 135 (805)
.+..+.+.+|++|+|+|..... .....+.|+|- +.. + ...+|+.+.. ..+.++|+|.+++.+|
T Consensus 5 ~~~~v~~~~G~~v~L~C~~~~~-~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D 83 (116)
T cd07706 5 AQPDVSVQVGEEVTLNCRYETS-WTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED 83 (116)
T ss_pred eCCceEEcCCCCEEEEEEEeCC-CCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence 3446789999999999998731 24567999982 211 1 1235777763 3457899999999999
Q ss_pred CeEEEEEEEe
Q psy2166 136 QGIYTCRAWN 145 (805)
Q Consensus 136 ~G~Y~C~a~n 145 (805)
+|.|.|.+..
T Consensus 84 sg~Y~C~~~~ 93 (116)
T cd07706 84 SAKYFCALST 93 (116)
T ss_pred CEEEEEEEEC
Confidence 9999999975
|
IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=98.18 E-value=9.3e-06 Score=64.52 Aligned_cols=65 Identities=11% Similarity=0.141 Sum_probs=47.6
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEe-eCc----EEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH-AFG----MVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~-~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
++|.|.+. .++|.+.|+|+|||+.+.......... .++ .+.|.|..-..+|...|+|+|.|..-.
T Consensus 2 ~~LtC~a~-gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTS-GSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeC-CccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 68999998 357889999999999986543322222 222 346888777778888999999997643
|
Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.6e-06 Score=67.67 Aligned_cols=79 Identities=18% Similarity=0.182 Sum_probs=54.9
Q ss_pred cCCCeEEEEEEEeeCCCCCcEEEEEECCEEcc--C-----C------Cce--EEEeeCCEEEEEEccCCCCCCEEEEEEE
Q psy2166 509 KEGQSAHFEARLTPVTDPDLVVEWFYNGKKLP--H-----G------HRY--RTFHDFGIVILDILYCYEENSGVYECRA 573 (805)
Q Consensus 509 ~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~--~-----~------~~~--~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 573 (805)
..|++|+|.|.... +.....+.|+|....+. . . .++ +..-+.....|.|.+++.+|+|.|.|.+
T Consensus 2 ~~G~sVtL~c~~~~-~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v 80 (97)
T cd05775 2 ILGGSVTLPLNIPD-GTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEI 80 (97)
T ss_pred ccCCeEEEeCCCCC-CcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEE
Confidence 47999999998862 25667899998754321 1 0 111 1112234467999999999999999999
Q ss_pred EcCCcce-EEEEEEEE
Q psy2166 574 TNKYGSD-VTKASLKC 588 (805)
Q Consensus 574 ~n~~g~~-~~~~~l~V 588 (805)
.+..|.. ...+.|.|
T Consensus 81 ~~~~~~~~~~~f~L~v 96 (97)
T cd05775 81 NTKNGVTITKEFTLHI 96 (97)
T ss_pred EcCCCCeEEEEEEEEe
Confidence 9887665 55666665
|
Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region |
| >cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)) | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.1e-05 Score=64.03 Aligned_cols=65 Identities=14% Similarity=0.236 Sum_probs=45.9
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEe-eCC----EEEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFH-DFG----IVILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~-~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
++|+|.+.+ +.|.+.++|+|||+.+.......... .++ .+.|.+.....+|...|+|+|.|..-.
T Consensus 2 ~~LtC~a~g-f~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSG-SKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCC-ccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 689999997 57889999999999986543222222 111 345777755556677999999986544
|
Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition. |
| >cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.7e-05 Score=65.52 Aligned_cols=69 Identities=20% Similarity=0.342 Sum_probs=46.8
Q ss_pred ccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEE-eeC-C---EEEEEEccCCCCCCE-EEEEEEEcCC
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTF-HDF-G---IVILDILYCYEENSG-VYECRATNKY 577 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~-~~~-~---~~~L~i~~v~~~d~G-~Y~C~a~n~~ 577 (805)
...|+.++|.|.+.++-++...++|+|||+.+......... .++ . .+.|.+.. ...|.| .|+|.+.+..
T Consensus 18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT 92 (111)
T ss_pred cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence 56788899999999854446899999999998643222211 222 1 33466664 344544 5999999864
|
IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating |
| >PHA02987 Ig domain OX-2-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.1e-05 Score=72.11 Aligned_cols=85 Identities=19% Similarity=0.216 Sum_probs=61.5
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEE----------ccC--CCCeE-EEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKP----------IEA--SHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~----------l~~--~~~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
+|.+|+.|+|.|... .+...+.|+|+|..+. +.+ .+|++ +........|+|.+|+.+|+|.|+|..
T Consensus 26 ~V~ege~VtLsCs~t-~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F 104 (189)
T PHA02987 26 TVSEHVNVKISCNKT-SSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF 104 (189)
T ss_pred EEcCCCCEEEEEecC-CCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence 899999999999984 2556788999996321 111 13554 344445578999999999999999995
Q ss_pred EcC-Cc-cEEEEEEEEEEEeC
Q psy2166 770 TNK-WG-QAEISVNLECVVWS 788 (805)
Q Consensus 770 ~N~-~G-~~~~~~~l~V~~~~ 788 (805)
.-- .| ..+.++.|+|....
T Consensus 105 ~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 105 NTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EecCCCCCceeEEEEEEEchh
Confidence 432 35 67777888887643
|
|
| >PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.2e-05 Score=67.60 Aligned_cols=85 Identities=13% Similarity=0.231 Sum_probs=59.0
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEECCE-----ecC--------------CCCceEEEec--CcEEEEEEccc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGK-----PLE--------------LGSRFKTTAD--FGFVTLDLTEV 131 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~-----~i~--------------~~~~~~~~~~--~~~~~L~I~~~ 131 (805)
+..+.+.+|++++|.|... .......+.|++... .+. ..+|+.+..+ ...++|.|.++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~-~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l 86 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYS-SSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNL 86 (114)
T ss_dssp ESEEEEETTSEEEEEEEEE-SSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSE
T ss_pred CCeEEEecCCCEEEEEEEe-CCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCC
Confidence 4467899999999999998 234566899998321 111 1234444443 35789999999
Q ss_pred ccCCCeEEEEEEEeC-CeeEEEEEEEEE
Q psy2166 132 YDRDQGIYTCRAWNL-AGETFTSTTIYC 158 (805)
Q Consensus 132 ~~~D~G~Y~C~a~n~-~g~~~~~~~l~V 158 (805)
+.+|+|.|.|.+... .......+.|.|
T Consensus 87 ~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 87 QPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp SGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 999999999999886 233334444543
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A .... |
| >PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.7e-05 Score=67.08 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=57.6
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCE-----Ecc--------------CCCCeEEEee--CcEEEEEEcCCCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGK-----PIE--------------ASHRIRTVHA--FGMVVLEILGTKIED 761 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~-----~l~--------------~~~~~~~~~~--~~~~~L~i~~v~~~d 761 (805)
.+.+|+++.|.|... .......+.|++... .+. ...++.+..+ .+.+.|.|.+++.+|
T Consensus 12 ~~~~G~~v~L~C~~~-~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~D 90 (114)
T PF07686_consen 12 TVQEGESVTLPCSYS-SSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPSD 90 (114)
T ss_dssp EEETTSEEEEEEEEE-SSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGGG
T ss_pred EEecCCCEEEEEEEe-CCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcCc
Confidence 899999999999997 234667999998221 111 1134444333 346889999999999
Q ss_pred CEEEEEEEEcC-CccEEEEEEEEE
Q psy2166 762 TGVYTCRATNK-WGQAEISVNLEC 784 (805)
Q Consensus 762 ~G~Y~C~a~N~-~G~~~~~~~l~V 784 (805)
+|.|.|.+... .+.....+.|+|
T Consensus 91 sG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 91 SGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp EEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CEEEEEEEEECCCCEECCcEEEEC
Confidence 99999999987 445555555554
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A .... |
| >cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.6e-05 Score=64.89 Aligned_cols=77 Identities=18% Similarity=0.307 Sum_probs=52.0
Q ss_pred CcEEEEEEEecCC-CCCceEEEEEC--CE---ec---C----------CCCceEEEe--cCcEEEEEEcccccCCCeEEE
Q psy2166 82 QPLHLEAQVEPKN-DPNLKIEWIFN--GK---PL---E----------LGSRFKTTA--DFGFVTLDLTEVYDRDQGIYT 140 (805)
Q Consensus 82 ~~v~L~C~~~~~~-~p~~~v~W~k~--g~---~i---~----------~~~~~~~~~--~~~~~~L~I~~~~~~D~G~Y~ 140 (805)
.+|+|+|...... .....|.|+|. +. .+ . ..+|..+.. .....+|+|.+++.+|+|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~ 80 (100)
T cd05888 1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYK 80 (100)
T ss_pred CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEE
Confidence 3689999987321 12448999993 21 11 0 013444443 234568999999999999999
Q ss_pred EEEEe-CCeeEEEEEEEEE
Q psy2166 141 CRAWN-LAGETFTSTTIYC 158 (805)
Q Consensus 141 C~a~n-~~g~~~~~~~l~V 158 (805)
|.+.+ ..|..+..+.|.|
T Consensus 81 C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 81 CRVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEEeCCCCCeeeEEEEEe
Confidence 99987 5677777777766
|
Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult |
| >cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.7e-05 Score=65.35 Aligned_cols=79 Identities=14% Similarity=0.144 Sum_probs=54.0
Q ss_pred CCcEEEEEEEecCC-----CCCceEEEEEC-----CEec----C----------CCCceEEEec---CcEEEEEEccccc
Q psy2166 81 AQPLHLEAQVEPKN-----DPNLKIEWIFN-----GKPL----E----------LGSRFKTTAD---FGFVTLDLTEVYD 133 (805)
Q Consensus 81 G~~v~L~C~~~~~~-----~p~~~v~W~k~-----g~~i----~----------~~~~~~~~~~---~~~~~L~I~~~~~ 133 (805)
|++++|+|...... ...+.|.|.|- ...+ . ..+|..+..+ .+..+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78999999966211 12578999984 1111 0 1224445432 2567999999999
Q ss_pred CCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy2166 134 RDQGIYTCRAWNLAGETFTSTTIYCS 159 (805)
Q Consensus 134 ~D~G~Y~C~a~n~~g~~~~~~~l~V~ 159 (805)
+|+|.|+|.+.......+....|.|.
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEE
Confidence 99999999999866556666666664
|
Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen |
| >cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.6e-05 Score=64.76 Aligned_cols=79 Identities=18% Similarity=0.207 Sum_probs=49.6
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEE-EeeCc----EEEEEEcCCCCCCCE-E
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT-VHAFG----MVVLEILGTKIEDTG-V 764 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~-~~~~~----~~~L~i~~v~~~d~G-~ 764 (805)
.|.|..... ....|+.++|.|.+.++-.+...|+|+|||+.+........ ..+++ .+.|.+.. ...|.| .
T Consensus 8 ~p~i~~~~~---~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ 83 (111)
T cd05772 8 VPVVSGPSG---RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQ 83 (111)
T ss_pred CcEeCCchh---ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCc
Confidence 444443322 45678899999999943233479999999999865322111 12221 34577764 444444 5
Q ss_pred EEEEEEcCC
Q psy2166 765 YTCRATNKW 773 (805)
Q Consensus 765 Y~C~a~N~~ 773 (805)
|+|.+.+..
T Consensus 84 ytC~V~H~~ 92 (111)
T cd05772 84 VTCEVQHRT 92 (111)
T ss_pred eEEEEEeCC
Confidence 999999864
|
IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating |
| >cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.2e-05 Score=62.95 Aligned_cols=76 Identities=13% Similarity=0.193 Sum_probs=53.8
Q ss_pred CeEEEEEEEeecCCCCeEEEEEECC----EEcc-----------C--CCCeEEE-eeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 708 EIAHFEASLIPVGDQTMTVEFLYNG----KPIE-----------A--SHRIRTV-HAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 708 ~~~~l~C~~~~~g~p~~~v~W~~~g----~~l~-----------~--~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
+.++|.|.... ......|+|.|.. ..+. . .+|+.+. .+.+..+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~-~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQV-NETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKA 79 (96)
T ss_pred CCEEEEEEecC-CCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEE
Confidence 36899999862 2344689999842 1111 0 1344442 2233568999999999999999996
Q ss_pred -EcCCccEEEEEEEEE
Q psy2166 770 -TNKWGQAEISVNLEC 784 (805)
Q Consensus 770 -~N~~G~~~~~~~l~V 784 (805)
..+.|+.+.++.|+|
T Consensus 80 ~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 80 VTFPLGNTQSSTTVTV 95 (96)
T ss_pred EeCCCCCeeEEEEEEE
Confidence 667999999999988
|
Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also |
| >cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins) | Back alignment and domain information |
|---|
Probab=98.09 E-value=2e-05 Score=68.08 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=53.3
Q ss_pred cCCCCceecCCCcEEEEEEEecCC---C-CCceEEEEECC--E---e-c-----------CCCCceEEE--ecCcEEEEE
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPKN---D-PNLKIEWIFNG--K---P-L-----------ELGSRFKTT--ADFGFVTLD 127 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~~---~-p~~~v~W~k~g--~---~-i-----------~~~~~~~~~--~~~~~~~L~ 127 (805)
..|..+.+.+|+.|+|+|...... . ....+.|+|.. . . + ...+|+.+. ...+.++|.
T Consensus 4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~ 83 (119)
T cd05712 4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLL 83 (119)
T ss_pred cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEE
Confidence 345567899999999999876221 1 13568999842 1 1 1 011366663 345678999
Q ss_pred EcccccCCCeEEEEEEEeC
Q psy2166 128 LTEVYDRDQGIYTCRAWNL 146 (805)
Q Consensus 128 I~~~~~~D~G~Y~C~a~n~ 146 (805)
|.+++.+|+|.|.|++...
T Consensus 84 I~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 84 ISDAQPEDSGKYFFRVELG 102 (119)
T ss_pred EccCChhhCeEEEEEEEcC
Confidence 9999999999999998764
|
Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11. |
| >cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.9e-05 Score=68.10 Aligned_cols=68 Identities=15% Similarity=0.212 Sum_probs=51.3
Q ss_pred ccCCCCeEEEEEEEeecCC-CCeEEEEEEC--CEE---c---------cCCCCeEEEe--eCcEEEEEEcCCCCCCCEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGD-QTMTVEFLYN--GKP---I---------EASHRIRTVH--AFGMVVLEILGTKIEDTGVY 765 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~-p~~~v~W~~~--g~~---l---------~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y 765 (805)
.+.+|++++|.|... .. ....+.|+|- +.. + .-.+|+.+.. ..+.+.|+|.+++.+|+|.|
T Consensus 10 ~~~~G~~v~L~C~~~--~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y 87 (116)
T cd07706 10 SVQVGEEVTLNCRYE--TSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKY 87 (116)
T ss_pred EEcCCCCEEEEEEEe--CCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEE
Confidence 899999999999987 43 5678999982 211 1 1135666543 34578999999999999999
Q ss_pred EEEEEcC
Q psy2166 766 TCRATNK 772 (805)
Q Consensus 766 ~C~a~N~ 772 (805)
.|.+.+.
T Consensus 88 ~C~~~~~ 94 (116)
T cd07706 88 FCALSTL 94 (116)
T ss_pred EEEEECC
Confidence 9999853
|
IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is |
| >cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.7e-05 Score=65.67 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=52.7
Q ss_pred CCcEEEEEEEecCCCCCceEEEEECCE----ecC-----C--------CCceEE-EecCcEEEEEEcccccCCCeEEEEE
Q psy2166 81 AQPLHLEAQVEPKNDPNLKIEWIFNGK----PLE-----L--------GSRFKT-TADFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 81 G~~v~L~C~~~~~~~p~~~v~W~k~g~----~i~-----~--------~~~~~~-~~~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
|++|+|.|.... ......|.|+|... .+. . .+|+.+ ..+.+..+|.|.+++.+|+|.|+|.
T Consensus 1 G~~vtL~C~~~~-~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~ 79 (97)
T cd05846 1 GGNVTLSCNLTL-PEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCI 79 (97)
T ss_pred CCcEEEEEEeCC-CCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEE
Confidence 889999999763 22234699998421 110 0 113222 2223567899999999999999999
Q ss_pred EE-eCCeeEEEEEEEEE
Q psy2166 143 AW-NLAGETFTSTTIYC 158 (805)
Q Consensus 143 a~-n~~g~~~~~~~l~V 158 (805)
+. ...|.....+.|+|
T Consensus 80 ~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 80 FNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEeCCCCCeeeEEEEEE
Confidence 86 45778777888876
|
Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion. |
| >cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins | Back alignment and domain information |
|---|
Probab=98.07 E-value=2.5e-05 Score=64.77 Aligned_cols=76 Identities=17% Similarity=0.200 Sum_probs=53.0
Q ss_pred CCeEEEEEEEeecCCCC-eEEEEEECCE----Ecc---C----------CCCeEE-EeeCcEEEEEEcCCCCCCCEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQT-MTVEFLYNGK----PIE---A----------SHRIRT-VHAFGMVVLEILGTKIEDTGVYTC 767 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~-~~v~W~~~g~----~l~---~----------~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C 767 (805)
|++++|.|... .... -.|.|+|... .+. . .+|+.+ ..+.+.+.|+|.+++.+|+|.|.|
T Consensus 1 G~~vtL~C~~~--~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C 78 (97)
T cd05846 1 GGNVTLSCNLT--LPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKC 78 (97)
T ss_pred CCcEEEEEEeC--CCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEE
Confidence 78999999976 3332 3699998421 110 0 112222 122345789999999999999999
Q ss_pred EEE-cCCccEEEEEEEEE
Q psy2166 768 RAT-NKWGQAEISVNLEC 784 (805)
Q Consensus 768 ~a~-N~~G~~~~~~~l~V 784 (805)
... .+.|..+..+.|+|
T Consensus 79 ~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 79 IFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEEeCCCCCeeeEEEEEE
Confidence 976 66888888888887
|
Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion. |
| >cd07699 IgC_L Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.6e-05 Score=65.93 Aligned_cols=83 Identities=17% Similarity=0.204 Sum_probs=55.4
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCce--EEEe-eCC---EEEEEEccCCCCCCEE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY--RTFH-DFG---IVILDILYCYEENSGV 568 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~--~~~~-~~~---~~~L~i~~v~~~d~G~ 568 (805)
+|.+.+.++.......++.++|.|.+.++-.+...++|++||+.+..+... .... ++. .+.|.+..-...+...
T Consensus 1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ 80 (100)
T cd07699 1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKV 80 (100)
T ss_pred CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCe
Confidence 466666555554466788899999999865558999999999998543111 1112 232 2346665544445679
Q ss_pred EEEEEEcCC
Q psy2166 569 YECRATNKY 577 (805)
Q Consensus 569 Y~C~a~n~~ 577 (805)
|+|.+.+..
T Consensus 81 ~sC~V~H~~ 89 (100)
T cd07699 81 YTCEVTHEG 89 (100)
T ss_pred EEEEEEecC
Confidence 999998764
|
IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) | Back alignment and domain information |
|---|
Probab=98.06 E-value=2e-05 Score=65.59 Aligned_cols=70 Identities=20% Similarity=0.299 Sum_probs=52.0
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEECCE-----ec--------CCCCceEEEec--CcEEEEEEcccccCCCeEEE
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGK-----PL--------ELGSRFKTTAD--FGFVTLDLTEVYDRDQGIYT 140 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~-----~i--------~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~ 140 (805)
+.+.+|++|+|+|..... .....+.|+|... .+ ...+|+.+..+ ++.++|+|.+++.+|+|.|.
T Consensus 2 v~~~~G~~vtl~C~~~~~-~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~ 80 (98)
T cd05716 2 VTGELGGSVTIPCPYPPK-NRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYW 80 (98)
T ss_pred EEEEeCCeEEEEeeCCCC-CCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEE
Confidence 367899999999998732 4566789998531 11 12346666433 56789999999999999999
Q ss_pred EEEEeC
Q psy2166 141 CRAWNL 146 (805)
Q Consensus 141 C~a~n~ 146 (805)
|.+...
T Consensus 81 C~~~~~ 86 (98)
T cd05716 81 CGVGDD 86 (98)
T ss_pred EEcccC
Confidence 999764
|
Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. |
| >cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR) | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.7e-05 Score=65.96 Aligned_cols=70 Identities=16% Similarity=0.205 Sum_probs=51.4
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCE-----Ec--------cCCCCeEEEe--eCcEEEEEEcCCCCCCCEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGK-----PI--------EASHRIRTVH--AFGMVVLEILGTKIEDTGVYTC 767 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~-----~l--------~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C 767 (805)
.+.+|++++|.|.... ..+...+.|+|... .+ .-..|+.+.. ..+.+.|+|.+++.+|+|.|.|
T Consensus 3 ~~~~G~~vtl~C~~~~-~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 3 TGELGGSVTIPCPYPP-KNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEeCCeEEEEeeCCC-CCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 6789999999999861 24567899998531 11 1124555532 2567899999999999999999
Q ss_pred EEEcCC
Q psy2166 768 RATNKW 773 (805)
Q Consensus 768 ~a~N~~ 773 (805)
.+.+..
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 988753
|
Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions. |
| >cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.3e-05 Score=62.33 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=51.2
Q ss_pred cEEEEEEEecC--CCCCceEEEEECC----EecC-------------CCCceEEEe-cCcEEEEEEcccccCCCeEEEEE
Q psy2166 83 PLHLEAQVEPK--NDPNLKIEWIFNG----KPLE-------------LGSRFKTTA-DFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 83 ~v~L~C~~~~~--~~p~~~v~W~k~g----~~i~-------------~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
.|+|+|..... .....+|+|.|.. ..+. ..+|..... ..+..+|.|.+++.+|+|.|+|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 68999999731 1112369998831 1110 112333321 22345899999999999999999
Q ss_pred EEe-CCeeEEEEEEEEE
Q psy2166 143 AWN-LAGETFTSTTIYC 158 (805)
Q Consensus 143 a~n-~~g~~~~~~~l~V 158 (805)
+.+ ..|..+..+.|+|
T Consensus 82 v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGNRESQLNLTV 98 (99)
T ss_pred EEeCCCCCeEEEEEEEE
Confidence 998 6788888888877
|
Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is |
| >cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.2e-05 Score=61.88 Aligned_cols=72 Identities=18% Similarity=0.287 Sum_probs=46.8
Q ss_pred ccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc-eEEE-e-eCCEEEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR-YRTF-H-DFGIVILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~-~~~~-~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
+..|+.++|.|.+.++-++...++|++||+++..+.. .... . ++.........+...+...|+|.+.+....
T Consensus 11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence 4578999999999987677779999999999865411 1111 1 222222222223345666999999886543
|
IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be |
| >cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.4e-05 Score=62.54 Aligned_cols=80 Identities=16% Similarity=0.163 Sum_probs=48.6
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCC---ceEEEeeCCEEEEEEccCCCCCCEEEEE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGH---RYRTFHDFGIVILDILYCYEENSGVYEC 571 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~---~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 571 (805)
+|.+.+..+.. .|+.++|.|.+.++-++...++|+++|+.+..+. .+....++.........+...|.+.|+|
T Consensus 2 pP~v~v~~~~~----~~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC 77 (93)
T cd07698 2 PPEVRVTRKRA----PDGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSC 77 (93)
T ss_pred CCEEEEEecCC----CCCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEE
Confidence 46665554432 1788999999997545556999999997543321 1111222232222223334458899999
Q ss_pred EEEcCCc
Q psy2166 572 RATNKYG 578 (805)
Q Consensus 572 ~a~n~~g 578 (805)
.+.+..-
T Consensus 78 ~V~H~~~ 84 (93)
T cd07698 78 RVEHSGL 84 (93)
T ss_pred EEEeCCC
Confidence 9987643
|
IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells. |
| >cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican | Back alignment and domain information |
|---|
Probab=98.01 E-value=8.1e-05 Score=62.52 Aligned_cols=79 Identities=20% Similarity=0.350 Sum_probs=54.1
Q ss_pred CCcEEEEEEEecCC---------CCCceEEEEEC-----CE-----ec------------CCCCceEEEec---CcEEEE
Q psy2166 81 AQPLHLEAQVEPKN---------DPNLKIEWIFN-----GK-----PL------------ELGSRFKTTAD---FGFVTL 126 (805)
Q Consensus 81 G~~v~L~C~~~~~~---------~p~~~v~W~k~-----g~-----~i------------~~~~~~~~~~~---~~~~~L 126 (805)
|.+++|+|.....+ ...+.|.|+|- |. .+ ...+|..+..+ .+..+|
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL 81 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL 81 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence 78899999998321 12458999873 21 11 01224444322 256799
Q ss_pred EEcccccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy2166 127 DLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCS 159 (805)
Q Consensus 127 ~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 159 (805)
.|.+++.+|+|.|+|.+.+.....+....|.|.
T Consensus 82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred EEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 999999999999999999876666666666664
|
Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA |
| >PHA03269 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0009 Score=68.32 Aligned_cols=81 Identities=20% Similarity=0.212 Sum_probs=58.9
Q ss_pred eEEEEEcCCCCcccEEEEEEEEcCC---eeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCC-
Q psy2166 260 MVVLEILGTKIEDTGVYTCRATNKW---GQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE- 335 (805)
Q Consensus 260 ~~~L~i~~~~~~d~G~Y~C~~~n~~---g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~- 335 (805)
...|.|.+++..++|.|+=.+.+.. ...+..+.|.+. .+|.+...+.+ +.+|+...-.|.+.. .+|.
T Consensus 288 ~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y-----r~PsVsV~p~P---VL~Ge~YkAtC~vA~-YYPp~ 358 (566)
T PHA03269 288 DFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY-----KRPNITVIGDP---VLLGNPYAAYCKVNK-YYPPH 358 (566)
T ss_pred ccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe-----cCCCccccCCc---cccCCCceEEEEeee-ecCCC
Confidence 4579999999999999986655322 233556666665 45666655554 668999999999974 3443
Q ss_pred -cEEEEEECCEEccC
Q psy2166 336 -LKVEWFHNGKPIFH 349 (805)
Q Consensus 336 -~~v~W~~~g~~l~~ 349 (805)
..+.|++||.++..
T Consensus 359 SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 359 SVIVKWTSNFGNIGK 373 (566)
T ss_pred ceEEEEEeCCcccCc
Confidence 57999999988864
|
|
| >cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.3e-05 Score=65.72 Aligned_cols=67 Identities=19% Similarity=0.352 Sum_probs=49.4
Q ss_pred eecCCCcEEEEEEEecCCCCCceEEEEEC--C--Eec------C------------CCCceEEEecCcEEEEEEcccccC
Q psy2166 77 KLGEAQPLHLEAQVEPKNDPNLKIEWIFN--G--KPL------E------------LGSRFKTTADFGFVTLDLTEVYDR 134 (805)
Q Consensus 77 ~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g--~~i------~------------~~~~~~~~~~~~~~~L~I~~~~~~ 134 (805)
.+.+|++|+|.|.+.. .....+.|+|- | ..+ . ...|+.+..+...+.|+|.+++.+
T Consensus 2 ~v~~G~~vtL~C~~~~--~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~s 79 (104)
T cd05720 2 DAELGQKVELKCEVLN--SSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKE 79 (104)
T ss_pred cccCCCeEEEEEEecC--CCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHH
Confidence 4689999999999862 33456999983 3 111 0 023566656667889999999999
Q ss_pred CCeEEEEEEEe
Q psy2166 135 DQGIYTCRAWN 145 (805)
Q Consensus 135 D~G~Y~C~a~n 145 (805)
|+|.|.|.+.+
T Consensus 80 DsgtY~Ca~~~ 90 (104)
T cd05720 80 NEGYYFCSVAS 90 (104)
T ss_pred HCEEEEEEEcc
Confidence 99999999864
|
Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. |
| >cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.2e-05 Score=65.42 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=48.3
Q ss_pred ccCCCCeEEEEEEEeecCC-CCeEEEEEEC--C---EEc------c-----------CCCCeEE--EeeCcEEEEEEcCC
Q psy2166 703 NLSEGEIAHFEASLIPVGD-QTMTVEFLYN--G---KPI------E-----------ASHRIRT--VHAFGMVVLEILGT 757 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~-p~~~v~W~~~--g---~~l------~-----------~~~~~~~--~~~~~~~~L~i~~v 757 (805)
.+.+|++++|.|.+. +. ....+.|||- | +.+ . ...++.+ ..+...+.|+|.++
T Consensus 2 ~v~~G~~vtL~C~~~--~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 79 (107)
T cd07700 2 LVQTNNTVKLSCEAK--GISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRV 79 (107)
T ss_pred EEcCCCCEEEEEEEe--cCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCC
Confidence 688999999999986 53 3458999982 2 110 0 0234443 23345678999999
Q ss_pred CCCCCEEEEEEEEcC
Q psy2166 758 KIEDTGVYTCRATNK 772 (805)
Q Consensus 758 ~~~d~G~Y~C~a~N~ 772 (805)
+.+|+|.|.|...+.
T Consensus 80 ~~~Dsg~YyCa~~~~ 94 (107)
T cd07700 80 KPEDSGTYFCMTVGS 94 (107)
T ss_pred CHHHCEEEEEeEcCC
Confidence 999999999998643
|
IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. |
| >cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins | Back alignment and domain information |
|---|
Probab=97.97 E-value=6.2e-05 Score=61.26 Aligned_cols=76 Identities=24% Similarity=0.269 Sum_probs=54.0
Q ss_pred CcEEEEEEEecCCCCCceEEEEECC----EecC-------------CCCceEEE-ecCcEEEEEEcccccCCCeEEEEEE
Q psy2166 82 QPLHLEAQVEPKNDPNLKIEWIFNG----KPLE-------------LGSRFKTT-ADFGFVTLDLTEVYDRDQGIYTCRA 143 (805)
Q Consensus 82 ~~v~L~C~~~~~~~p~~~v~W~k~g----~~i~-------------~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a 143 (805)
++++|+|.... ......|+|.|.. ..+. ..+|..+. .+.+..+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~-~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQV-NETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKA 79 (96)
T ss_pred CCEEEEEEecC-CCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEE
Confidence 47899999873 3456689999842 1221 11244442 2234558999999999999999997
Q ss_pred E-eCCeeEEEEEEEEE
Q psy2166 144 W-NLAGETFTSTTIYC 158 (805)
Q Consensus 144 ~-n~~g~~~~~~~l~V 158 (805)
. ...|+.+....|+|
T Consensus 80 ~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 80 VTFPLGNTQSSTTVTV 95 (96)
T ss_pred EeCCCCCeeEEEEEEE
Confidence 5 56888888888887
|
Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also |
| >cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.7e-05 Score=65.01 Aligned_cols=68 Identities=19% Similarity=0.322 Sum_probs=48.3
Q ss_pred eecCCCcEEEEEEEecCCCCCceEEEEEC--C---Eec------C-----------CCCceEE--EecCcEEEEEEcccc
Q psy2166 77 KLGEAQPLHLEAQVEPKNDPNLKIEWIFN--G---KPL------E-----------LGSRFKT--TADFGFVTLDLTEVY 132 (805)
Q Consensus 77 ~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g---~~i------~-----------~~~~~~~--~~~~~~~~L~I~~~~ 132 (805)
.|.+|++|+|.|.+... .....+.|||- | ..+ . ...|+.+ ..++..+.|+|.+++
T Consensus 2 ~v~~G~~vtL~C~~~~~-~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 80 (107)
T cd07700 2 LVQTNNTVKLSCEAKGI-SENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK 80 (107)
T ss_pred EEcCCCCEEEEEEEecC-CCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence 57899999999998631 23457999983 2 110 0 0235654 334556789999999
Q ss_pred cCCCeEEEEEEEe
Q psy2166 133 DRDQGIYTCRAWN 145 (805)
Q Consensus 133 ~~D~G~Y~C~a~n 145 (805)
.+|+|.|.|...+
T Consensus 81 ~~Dsg~YyCa~~~ 93 (107)
T cd07700 81 PEDSGTYFCMTVG 93 (107)
T ss_pred HHHCEEEEEeEcC
Confidence 9999999999853
|
IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. |
| >PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.4e-05 Score=62.23 Aligned_cols=69 Identities=22% Similarity=0.283 Sum_probs=48.1
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeE-EEeeCc----EEEEEEcCCCCCCCEEEEEEEEcCCccE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR-TVHAFG----MVVLEILGTKIEDTGVYTCRATNKWGQA 776 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~-~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 776 (805)
|+.+.|.|.+. .|+|.|.|+|+.++..+....... ...+.+ .+.|.+..-..++...++|.|.|..-..
T Consensus 14 ~~~~~~~C~s~-~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSS-GGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEE-EEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeC-CeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 78999999887 489999999999998772211111 111111 2468887666778899999999976543
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B .... |
| >cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.3e-05 Score=60.78 Aligned_cols=78 Identities=18% Similarity=0.287 Sum_probs=50.0
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCce---EEEeeCC---EEEEEEccCCCCCCEE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY---RTFHDFG---IVILDILYCYEENSGV 568 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~---~~~~~~~---~~~L~i~~v~~~d~G~ 568 (805)
||.+.+..... ...|+.++|.|.+.++-++...++|.+||+++..+... ....++. .+.|.+. ..+...
T Consensus 1 ~P~V~v~~~~~--~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ 75 (94)
T cd05767 1 PPEVTVFSLKP--VELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDI 75 (94)
T ss_pred CCEEEEEeCCc--ccCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCe
Confidence 35555443332 34567789999999876778999999999998654211 1112222 2235554 355669
Q ss_pred EEEEEEcCC
Q psy2166 569 YECRATNKY 577 (805)
Q Consensus 569 Y~C~a~n~~ 577 (805)
|+|.+.+..
T Consensus 76 ytC~V~H~~ 84 (94)
T cd05767 76 YSCIVEHWG 84 (94)
T ss_pred EEEEEEeCC
Confidence 999998753
|
IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom |
| >cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.90 E-value=8.6e-05 Score=60.84 Aligned_cols=76 Identities=18% Similarity=0.281 Sum_probs=45.7
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCe-EEE-eeCcE----EEEEEcCCCCCCCEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI-RTV-HAFGM----VVLEILGTKIEDTGV 764 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~-~~~-~~~~~----~~L~i~~v~~~d~G~ 764 (805)
||.+....... . |+.++|.|.+.++-.+...++|+++|+.+...... ... ..++. +.|.| ...+.+.
T Consensus 2 pP~v~v~~~~~-~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v---~~~~~~~ 74 (93)
T cd07698 2 PPEVRVTRKRA-P---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEV---PPEDKAR 74 (93)
T ss_pred CCEEEEEecCC-C---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEE---CCCCCCE
Confidence 45555554433 2 78899999999322233499999999744333211 111 22222 23444 3348899
Q ss_pred EEEEEEcCC
Q psy2166 765 YTCRATNKW 773 (805)
Q Consensus 765 Y~C~a~N~~ 773 (805)
|+|.+.+..
T Consensus 75 ytC~V~H~~ 83 (93)
T cd07698 75 YSCRVEHSG 83 (93)
T ss_pred EEEEEEeCC
Confidence 999998754
|
IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells. |
| >cd07699 IgC_L Immunoglobulin Constant domain | Back alignment and domain information |
|---|
Probab=97.90 E-value=7e-05 Score=62.09 Aligned_cols=82 Identities=16% Similarity=0.196 Sum_probs=53.8
Q ss_pred CeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCc---eEEEecCc---EEEEEEcccccCCCeEE
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSR---FKTTADFG---FVTLDLTEVYDRDQGIY 139 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~---~~~~~~~~---~~~L~I~~~~~~D~G~Y 139 (805)
|.+.+-++......+++.++|.|.+.+.-.....|+|++||..+..+.. .....++. .+.|.+.....++...|
T Consensus 2 P~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~ 81 (100)
T cd07699 2 PSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVY 81 (100)
T ss_pred CeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeE
Confidence 4444444445566678899999999975333789999999999864311 11111221 33566766666667899
Q ss_pred EEEEEeCC
Q psy2166 140 TCRAWNLA 147 (805)
Q Consensus 140 ~C~a~n~~ 147 (805)
.|.+.+..
T Consensus 82 sC~V~H~~ 89 (100)
T cd07699 82 TCEVTHEG 89 (100)
T ss_pred EEEEEecC
Confidence 99998764
|
IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains. |
| >cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.7e-05 Score=63.86 Aligned_cols=67 Identities=16% Similarity=0.366 Sum_probs=48.6
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC--C--EE---cc---C------------CCCeEEEeeCcEEEEEEcCCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--G--KP---IE---A------------SHRIRTVHAFGMVVLEILGTKIE 760 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g--~~---l~---~------------~~~~~~~~~~~~~~L~i~~v~~~ 760 (805)
.+.+|++|+|.|.+. +.-...+.|+|- | .. |. . ..++.+..+.....|+|.+++.+
T Consensus 2 ~v~~G~~vtL~C~~~--~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~s 79 (104)
T cd05720 2 DAELGQKVELKCEVL--NSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKE 79 (104)
T ss_pred cccCCCeEEEEEEec--CCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHH
Confidence 578999999999986 444567999983 2 11 00 0 12344444557788999999999
Q ss_pred CCEEEEEEEEc
Q psy2166 761 DTGVYTCRATN 771 (805)
Q Consensus 761 d~G~Y~C~a~N 771 (805)
|+|.|.|.+.+
T Consensus 80 DsgtY~Ca~~~ 90 (104)
T cd05720 80 NEGYYFCSVAS 90 (104)
T ss_pred HCEEEEEEEcc
Confidence 99999999865
|
Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies. |
| >cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.89 E-value=7.6e-05 Score=63.01 Aligned_cols=87 Identities=15% Similarity=0.157 Sum_probs=56.6
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc---eEEEee-CC---EEEEEEccCCCCC-C
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR---YRTFHD-FG---IVILDILYCYEEN-S 566 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~---~~~~~~-~~---~~~L~i~~v~~~d-~ 566 (805)
+|.+.+.++....+.+++.++|.|.+.++-++...|+|+|||+.+..+.. .....+ +. .+.|.|......| .
T Consensus 2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~ 81 (115)
T cd05769 2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPR 81 (115)
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCC
Confidence 46666665555446677889999999986555679999999999865422 111222 12 3346666444334 4
Q ss_pred EEEEEEEEcCCcceE
Q psy2166 567 GVYECRATNKYGSDV 581 (805)
Q Consensus 567 G~Y~C~a~n~~g~~~ 581 (805)
..|+|.+.+......
T Consensus 82 ~~ytC~V~H~g~~~~ 96 (115)
T cd05769 82 NTFTCIVQFYGGTDT 96 (115)
T ss_pred CeEEEEEEEeCCccc
Confidence 599999987644433
|
IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs. |
| >cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4 | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0001 Score=57.32 Aligned_cols=77 Identities=10% Similarity=0.178 Sum_probs=55.5
Q ss_pred ccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEE
Q psy2166 214 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l 293 (805)
.+..|++++|+|...+.+.|.+.|+|+..+..... ....+..+|.+..+...|+|.++|.+.......+..+.+
T Consensus 10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V 83 (88)
T cd07694 10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDI 83 (88)
T ss_pred eeecCCcEEEEEecCCCCCCCccEEEeCCCCccce------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeE
Confidence 37899999999998544455669999976543221 111233579999999999999999998665555666666
Q ss_pred EEe
Q psy2166 294 ECV 296 (805)
Q Consensus 294 ~v~ 296 (805)
.|.
T Consensus 84 ~Vl 86 (88)
T cd07694 84 KVL 86 (88)
T ss_pred EEE
Confidence 654
|
Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy. |
| >cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0002 Score=57.96 Aligned_cols=69 Identities=19% Similarity=0.336 Sum_probs=46.8
Q ss_pred ccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCce-EE--EeeCCEEEEEEccCCCCCCEEEEEEEEcCC
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY-RT--FHDFGIVILDILYCYEENSGVYECRATNKY 577 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~-~~--~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 577 (805)
+..|+..+|.|.|.++-++...++|+|||+++. +... .. ..++.........+...+...|+|.+.+..
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~ 83 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS 83 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence 456777899999998878889999999999986 3211 11 222333222222334567779999998753
|
IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted. |
| >cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.9e-05 Score=64.35 Aligned_cols=73 Identities=23% Similarity=0.325 Sum_probs=51.1
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec-----------------CCCCceEEEecC--cEEEEEEccc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL-----------------ELGSRFKTTADF--GFVTLDLTEV 131 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i-----------------~~~~~~~~~~~~--~~~~L~I~~~ 131 (805)
+....+.+|++|+|.|...........+.|||- |+.. ...+|+.+..+. ..+.|+|.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 335788999999999987622112356999982 2211 012467666543 4568999999
Q ss_pred ccCCCeEEEEEEEe
Q psy2166 132 YDRDQGIYTCRAWN 145 (805)
Q Consensus 132 ~~~D~G~Y~C~a~n 145 (805)
+.+|+|.|.|.+..
T Consensus 84 ~~~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TPEDTAVYYCARGL 97 (117)
T ss_pred CHHHCEEEEEEEEc
Confidence 99999999999864
|
IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains. |
| >cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.86 E-value=6.3e-05 Score=62.45 Aligned_cols=78 Identities=14% Similarity=0.223 Sum_probs=49.6
Q ss_pred ecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceE--EEe----eCC---EEEEEEccCCCCCCEEEE
Q psy2166 500 TQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR--TFH----DFG---IVILDILYCYEENSGVYE 570 (805)
Q Consensus 500 ~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~--~~~----~~~---~~~L~i~~v~~~d~G~Y~ 570 (805)
+.++....+..|..++|.|.+.++-++...++|++||+++....... ... ++. .+.|.|..-...+...|+
T Consensus 5 l~~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~yt 84 (102)
T cd05768 5 VLPPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFT 84 (102)
T ss_pred EeCcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEE
Confidence 33333333566889999999998766677899999999986432111 111 122 234666543334566899
Q ss_pred EEEEcCC
Q psy2166 571 CRATNKY 577 (805)
Q Consensus 571 C~a~n~~ 577 (805)
|.+.+..
T Consensus 85 C~V~H~~ 91 (102)
T cd05768 85 CVVGHEA 91 (102)
T ss_pred EEeEeCC
Confidence 9998764
|
IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd00096 Ig Immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.85 E-value=7.4e-05 Score=57.59 Aligned_cols=64 Identities=31% Similarity=0.460 Sum_probs=48.0
Q ss_pred EEEEEEEeecCCCCeEEEEEECCEEccCCCCe----EEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 710 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRI----RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~----~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
+.|.|.+. +.+.+.+.|++++......... ..........|.|.+++.+|+|.|.|.+.+..+.
T Consensus 1 ~~l~C~~~--~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 68 (74)
T cd00096 1 VTLTCLAS--GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGT 68 (74)
T ss_pred CEEEEEec--CCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCcCc
Confidence 47899998 6888999999998766544321 1112234567999999999999999999987643
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >PHA03273 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0025 Score=65.06 Aligned_cols=79 Identities=22% Similarity=0.367 Sum_probs=57.8
Q ss_pred EEEEEcCCCCcccEEEEEEEEcCCeeE--EEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCC--c
Q psy2166 261 VVLEILGTKIEDTGVYTCRATNKWGQA--EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE--L 336 (805)
Q Consensus 261 ~~L~i~~~~~~d~G~Y~C~~~n~~g~~--~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~--~ 336 (805)
..|.|..++..++|.|+=.+.+..+.. ...+.|..+ .+|.+...+.+ +.+|+...-.|.+.. -+|. .
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~y-----r~Psvsv~~~P---vL~Ge~y~A~C~aa~-YYPp~Sv 268 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTY-----NAPLVDLSVHP---SLKGENYRAVCVVAS-YFPHSSV 268 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEe-----cCCcccccCCc---cccCCCceEEEEeee-ecCCCce
Confidence 359999999999999987765654443 344444444 56666665554 668999999999974 4443 5
Q ss_pred EEEEEECCEEcc
Q psy2166 337 KVEWFHNGKPIF 348 (805)
Q Consensus 337 ~v~W~~~g~~l~ 348 (805)
.+.|++||.++.
T Consensus 269 ~~rWf~dg~~V~ 280 (486)
T PHA03273 269 KLRWYKNAKEVD 280 (486)
T ss_pred EEEEEeCCeecc
Confidence 799999999987
|
|
| >PHA03270 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0048 Score=62.41 Aligned_cols=212 Identities=14% Similarity=0.113 Sum_probs=113.4
Q ss_pred eecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEEEEEE
Q psy2166 77 KLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156 (805)
Q Consensus 77 ~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l 156 (805)
.+.+|+.+.+.=... .-...+.|--.-.+=..-..|.+........|.|..++...+|.|+=..-+..+.......+
T Consensus 138 ~a~~~g~l~y~sa~~---~~~~~~~~a~ga~Pg~~P~~y~~~g~~p~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~V 214 (466)
T PHA03270 138 TAPPGGELVYDSAPN---RTDPRVRWAEGAGPGARPRLYSVEGTFPTQRLVIQELTLATQGMYYWARGPADRPHRYGTWT 214 (466)
T ss_pred ccCCCceEEeccCcc---ccCcccccccCCCCCCCCccccccCCCCcceEEEEEcccccceEEEEEEecCCCceeeeeEE
Confidence 344666666554332 12346677532111111124555433344579999999999999999987766544444445
Q ss_pred EEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCC--C
Q psy2166 157 YCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ--T 234 (805)
Q Consensus 157 ~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p--~ 234 (805)
+|... .+|.+...+.. +.+|+...-.|.+.. .+| .
T Consensus 215 tV~~y---------------------------------------r~Psvsv~~~P---vL~Ge~Y~AtC~va~-YYPp~S 251 (466)
T PHA03270 215 RVRMF---------------------------------------RRPSLSIRPHA---VLEGEPFGATCVAAN-YYPGDR 251 (466)
T ss_pred EEEEe---------------------------------------cCCcccccCCc---cccCCCceEEEEeee-ecCCCc
Confidence 44321 23443333332 679999999999853 333 3
Q ss_pred eEEEEEECCEEccCCCcEEEEE---EcC---eEEEEEcCCCCc-ccEEEEEEEEc-CCeeE----EEEEEEEEeccCCCC
Q psy2166 235 MTVEFLYNGKPIEASHRIRTVH---AFG---MVVLEILGTKIE-DTGVYTCRATN-KWGQA----EISVNLECVDKSKGQ 302 (805)
Q Consensus 235 ~~i~W~k~g~~l~~~~~~~~~~---~~~---~~~L~i~~~~~~-d~G~Y~C~~~n-~~g~~----~~~~~l~v~~~~~~~ 302 (805)
..+.||+||.++.......... .++ .++|++.....+ ..=..+|.+.= ....+ +.+..-.|+ .
T Consensus 252 v~lrWf~ng~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY-----~ 326 (466)
T PHA03270 252 AAFRWFEGGDEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVL-----P 326 (466)
T ss_pred eEEEEEeCCccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccc-----c
Confidence 6899999999886433222111 122 345555443322 22378999872 22222 222222222 4
Q ss_pred CCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccC
Q psy2166 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFH 349 (805)
Q Consensus 303 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~ 349 (805)
+|.+.... ..| ...|.+.= ......+.|+.++.....
T Consensus 327 ~P~Isv~F------~dG---~AVCtA~C-VPegV~l~W~V~D~~~pa 363 (466)
T PHA03270 327 RPTIEMEF------GGD---EAVCTAAC-VPEGVTLAWLLGADPAPA 363 (466)
T ss_pred CCeEEEEE------eCC---EEEEeccc-cCCCCEEEEEecCCCCCC
Confidence 45544332 222 22365541 122468999987765543
|
|
| >PHA03270 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0043 Score=62.79 Aligned_cols=80 Identities=15% Similarity=0.277 Sum_probs=59.8
Q ss_pred EEEEEcCCCCcccEEEEEEEEcCCeeE--EEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCC--c
Q psy2166 261 VVLEILGTKIEDTGVYTCRATNKWGQA--EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE--L 336 (805)
Q Consensus 261 ~~L~i~~~~~~d~G~Y~C~~~n~~g~~--~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~--~ 336 (805)
..|.|..++...+|.|+=...+..+.. ...++|..+ .+|.+...+.+ +.+|+...-.|.+.. .+|. .
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~y-----r~Psvsv~~~P---vL~Ge~Y~AtC~va~-YYPp~Sv 252 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMF-----RRPSLSIRPHA---VLEGEPFGATCVAAN-YYPGDRA 252 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEe-----cCCcccccCCc---cccCCCceEEEEeee-ecCCCce
Confidence 359999999999999999977765533 344555555 56666655554 668999999999974 4443 5
Q ss_pred EEEEEECCEEccC
Q psy2166 337 KVEWFHNGKPIFH 349 (805)
Q Consensus 337 ~v~W~~~g~~l~~ 349 (805)
.+.|++||.++..
T Consensus 253 ~lrWf~ng~~V~~ 265 (466)
T PHA03270 253 AFRWFEGGDEVFA 265 (466)
T ss_pred EEEEEeCCccccC
Confidence 7999999998853
|
|
| >smart00407 IGc1 Immunoglobulin C-Type | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00017 Score=56.33 Aligned_cols=65 Identities=22% Similarity=0.332 Sum_probs=43.3
Q ss_pred eEEEEEEEeeCCCCCcEEEEEECCEEccCCCce-EE-E-eeCC---EEEEEEccCCCCCCEEEEEEEEcCC
Q psy2166 513 SAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY-RT-F-HDFG---IVILDILYCYEENSGVYECRATNKY 577 (805)
Q Consensus 513 ~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~-~~-~-~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~ 577 (805)
.++|.|.+.++-++.+.++|+|||+++..+... .. . .++. .+.|.|.....++...|+|.+.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 368999999754555899999999986443211 11 1 1222 3347776556667789999998754
|
|
| >cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00023 Score=58.02 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=49.5
Q ss_pred CeEEEEEEEeecCCCCeEEEEEECCE----E-----------ccC--CCCeEEEe-eCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 708 EIAHFEASLIPVGDQTMTVEFLYNGK----P-----------IEA--SHRIRTVH-AFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 708 ~~~~l~C~~~~~g~p~~~v~W~~~g~----~-----------l~~--~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
+.++|.|.... ......|+|.|... . +.. .+|+.+.. .....+|.|.+|+.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~-~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~ 79 (96)
T cd05889 1 EKMKLECVYPK-TGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSL 79 (96)
T ss_pred CCEEEEeEcCC-CCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEE
Confidence 46899999862 23567899998421 1 111 13444321 123468999999999999999998
Q ss_pred EcC-CccEEEEEEE
Q psy2166 770 TNK-WGQAEISVNL 782 (805)
Q Consensus 770 ~N~-~G~~~~~~~l 782 (805)
.+. .|..+..+.|
T Consensus 80 ~t~P~g~~~~~i~~ 93 (96)
T cd05889 80 VTYPQGSWEKVIEV 93 (96)
T ss_pred EeCCCCCeEEEEEE
Confidence 775 7777766655
|
Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes. |
| >cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE) | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00019 Score=58.52 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=47.2
Q ss_pred cCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc---eEEEeeCC---EEEEEEccCCCCCCEEEEEEEEcCCcce
Q psy2166 509 KEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR---YRTFHDFG---IVILDILYCYEENSGVYECRATNKYGSD 580 (805)
Q Consensus 509 ~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~---~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 580 (805)
..++.++|.|.|.++-++...++|++||+.+..+.. .....++. .+.|.+..-...+...|+|.+.+.....
T Consensus 12 ~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~ 89 (94)
T cd05847 12 GTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTF 89 (94)
T ss_pred CCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeee
Confidence 356779999999987666799999999998743211 11112222 2346666433445679999999875443
|
IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG. |
| >PHA03273 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0033 Score=64.23 Aligned_cols=163 Identities=18% Similarity=0.193 Sum_probs=94.7
Q ss_pred EEEEEcccccCCCeEEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCC
Q psy2166 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPP 203 (805)
Q Consensus 124 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 203 (805)
..|+|..++..++|.|.=+..+..+.......++|... .+|
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~y---------------------------------------r~P 238 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTY---------------------------------------NAP 238 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEe---------------------------------------cCC
Confidence 56999999999999998776566555555556665321 233
Q ss_pred ceecccccccccCCCceEEEEEEEeeCCCC-CeEEEEEECCEEccCCCc-EEEE--EE-c---CeEEEEEcCCC-CcccE
Q psy2166 204 QFTSEFQHLSNLSEGEIAHFEASLIPVGDQ-TMTVEFLYNGKPIEASHR-IRTV--HA-F---GMVVLEILGTK-IEDTG 274 (805)
Q Consensus 204 ~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p-~~~i~W~k~g~~l~~~~~-~~~~--~~-~---~~~~L~i~~~~-~~d~G 274 (805)
.+...+.. +.+|+...-.|.+...-.| ...+.||.||.++..... .... .. + ..++|.+.... .+..-
T Consensus 239 svsv~~~P---vL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP 315 (486)
T PHA03273 239 LVDLSVHP---SLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTP 315 (486)
T ss_pred cccccCCc---cccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCC
Confidence 33333332 6799999999998533222 368999999999983222 1111 11 1 24566665543 34445
Q ss_pred EEEEEEEc-CCeeEEE----EEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCC--CcEEEEEECC
Q psy2166 275 VYTCRATN-KWGQAEI----SVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDP--ELKVEWFHNG 344 (805)
Q Consensus 275 ~Y~C~~~n-~~g~~~~----~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p--~~~v~W~~~g 344 (805)
..+|.+.= ....... ++.-.|+ .+|.+.... ..| ...|.+. --| ...+.|+.++
T Consensus 316 ~lrC~v~W~rd~vS~~RfsAt~~P~Vy-----~~P~Is~~F------~~G---~AVCtA~--CVP~egV~l~W~v~D 376 (486)
T PHA03273 316 SLRCSIEWYRDEVSFARIAKAGTPSVF-----VAPTVSVTV------EDG---DAVCTAK--CVPSTGVFVSWSVND 376 (486)
T ss_pred CceEEEEEccCCcceeeccccccCccc-----cCCeEEEEE------eCC---EEEEecc--cccCCCeeEEEEccC
Confidence 88999872 2222222 2222222 445544322 222 2347765 444 3789998776
|
|
| >cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00017 Score=59.86 Aligned_cols=76 Identities=17% Similarity=0.254 Sum_probs=49.2
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceE--EEe----cC---cEEEEEEcccccCCCeEEEEE
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK--TTA----DF---GFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~--~~~----~~---~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
+++...+..|+.++|.|.+.+.-.+...|+|+|||+++....... ... ++ ..+.|.|..-...+...|.|+
T Consensus 7 ~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~ 86 (102)
T cd05768 7 PPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCV 86 (102)
T ss_pred CcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEE
Confidence 333455667899999999997533456889999999876432111 111 12 133566655544566789999
Q ss_pred EEeCC
Q psy2166 143 AWNLA 147 (805)
Q Consensus 143 a~n~~ 147 (805)
+.+..
T Consensus 87 V~H~~ 91 (102)
T cd05768 87 VGHEA 91 (102)
T ss_pred eEeCC
Confidence 98754
|
IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00026 Score=57.64 Aligned_cols=78 Identities=10% Similarity=0.050 Sum_probs=48.0
Q ss_pred ceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceE-EEeeCC----EEEEEEccCCCCCCEEEEE
Q psy2166 497 KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR-TFHDFG----IVILDILYCYEENSGVYEC 571 (805)
Q Consensus 497 ~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~-~~~~~~----~~~L~i~~v~~~d~G~Y~C 571 (805)
++.+..+....+..++.++|.|.|.++-++...++|.+||+.+..+.... ...+++ .+.|.|..- +....|+|
T Consensus 2 ~~~v~~ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~--~~~~~ysC 79 (96)
T cd07697 2 KPTIFSPSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKD--SLGKKFRC 79 (96)
T ss_pred CCeEECCCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECch--hCCCeEEE
Confidence 33444444333556788999999998777788999999999875432111 111222 223555432 12345999
Q ss_pred EEEcC
Q psy2166 572 RATNK 576 (805)
Q Consensus 572 ~a~n~ 576 (805)
.+.+.
T Consensus 80 ~V~H~ 84 (96)
T cd07697 80 IYKHE 84 (96)
T ss_pred EEEEC
Confidence 99874
|
IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. |
| >cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins) | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00019 Score=62.07 Aligned_cols=68 Identities=19% Similarity=0.175 Sum_probs=48.0
Q ss_pred ccCCCCeEEEEEEEeecCCC------CeEEEEEECC--E---E-c--c---------CCCCeEEE--eeCcEEEEEEcCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQ------TMTVEFLYNG--K---P-I--E---------ASHRIRTV--HAFGMVVLEILGT 757 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p------~~~v~W~~~g--~---~-l--~---------~~~~~~~~--~~~~~~~L~i~~v 757 (805)
.+.+|+.|+|.|... ..+ ...+.|+|.. . . + . -..|+... ...+.+.|.|.++
T Consensus 10 ~~~~G~~VtL~C~f~--~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l 87 (119)
T cd05712 10 SVQEGLCVLIPCSFS--YPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDA 87 (119)
T ss_pred EEeccccEEEEEEee--CcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccC
Confidence 789999999999875 221 3568999842 1 1 0 0 01344442 2455688999999
Q ss_pred CCCCCEEEEEEEEcC
Q psy2166 758 KIEDTGVYTCRATNK 772 (805)
Q Consensus 758 ~~~d~G~Y~C~a~N~ 772 (805)
+.+|+|.|.|.+...
T Consensus 88 ~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 88 QPEDSGKYFFRVELG 102 (119)
T ss_pred ChhhCeEEEEEEEcC
Confidence 999999999998663
|
Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11. |
| >cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00038 Score=56.83 Aligned_cols=70 Identities=20% Similarity=0.302 Sum_probs=44.5
Q ss_pred ecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCC---ceEEEecCcEEEEEEcccccCCCeEEEEEEEeCC
Q psy2166 78 LGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS---RFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLA 147 (805)
Q Consensus 78 v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~---~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 147 (805)
+..|+.++|.|.+.+.-.+...++|++||+.+..+. ...-..++.........+..++...|.|++.+..
T Consensus 11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~ 83 (94)
T cd05766 11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS 83 (94)
T ss_pred ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence 347899999999997534456899999999887541 1111222222222222334456779999998764
|
IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be |
| >cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00027 Score=57.64 Aligned_cols=73 Identities=11% Similarity=0.090 Sum_probs=48.0
Q ss_pred CCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeE-EEeeCc----EEEEEEcCCCCCCCEEEEEEEEcCCc--cEEE
Q psy2166 706 EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR-TVHAFG----MVVLEILGTKIEDTGVYTCRATNKWG--QAEI 778 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~-~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G--~~~~ 778 (805)
......+.|.+. .|+|.+.|+|+++. ....... .....+ .+.|.+.....+|...|+|+|.|..- ....
T Consensus 14 ~~~~~va~C~s~-~gkP~a~ItW~~~~---~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~ 89 (95)
T cd05719 14 GEPVTVATCVSA-NGKPPATISWETTL---GGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRF 89 (95)
T ss_pred CCccEEEEEECC-CCcCCCEEEEEeCC---CCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEE
Confidence 345688999996 48999999999971 1111111 111122 34688877778888899999999874 3444
Q ss_pred EEEE
Q psy2166 779 SVNL 782 (805)
Q Consensus 779 ~~~l 782 (805)
+++|
T Consensus 90 ~~~L 93 (95)
T cd05719 90 SVTL 93 (95)
T ss_pred EEEe
Confidence 4444
|
Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus |
| >cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00029 Score=59.49 Aligned_cols=84 Identities=15% Similarity=0.211 Sum_probs=54.8
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCC-ceEEEEECCEecCCCCc---eEEEecCc----EEEEEEcccccCC-
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPN-LKIEWIFNGKPLELGSR---FKTTADFG----FVTLDLTEVYDRD- 135 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~k~g~~i~~~~~---~~~~~~~~----~~~L~I~~~~~~D- 135 (805)
+|.+.+-+++..++.+++.++|.|.+.+. .|. ..|+|+|||+.+..+.. .....+++ .+.|.|......|
T Consensus 2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gF-yP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~ 80 (115)
T cd05769 2 PPTVAIFPPSEAEIRNKRKATLVCLATGF-YPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNP 80 (115)
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEEeE-eCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccC
Confidence 35555555555666678899999999975 444 69999999998875432 11222112 3356776655444
Q ss_pred CeEEEEEEEeCCee
Q psy2166 136 QGIYTCRAWNLAGE 149 (805)
Q Consensus 136 ~G~Y~C~a~n~~g~ 149 (805)
...|.|.+.+....
T Consensus 81 ~~~ytC~V~H~g~~ 94 (115)
T cd05769 81 RNTFTCIVQFYGGT 94 (115)
T ss_pred CCeEEEEEEEeCCc
Confidence 56999999876433
|
IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs. |
| >PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00018 Score=58.57 Aligned_cols=69 Identities=17% Similarity=0.300 Sum_probs=46.7
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCce-EEEeeCC----EEEEEEccCCCCCCEEEEEEEEcCCcce
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY-RTFHDFG----IVILDILYCYEENSGVYECRATNKYGSD 580 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~-~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 580 (805)
|+.+.|+|.+.+ +.|.+.++|+.++..+...... ....+++ .+.|.+..-..++...++|.|.|..-..
T Consensus 14 ~~~~~~~C~s~~-~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSSG-GYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEEE-EBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeCC-eECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 789999999987 8999999999999887211111 1111121 3457777544556779999999876543
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B .... |
| >cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00028 Score=57.37 Aligned_cols=66 Identities=18% Similarity=0.191 Sum_probs=42.9
Q ss_pred cCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCe-EE-EeeCcE----EEEEEcCCCCCCCEEEEEEEEcC
Q psy2166 704 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI-RT-VHAFGM----VVLEILGTKIEDTGVYTCRATNK 772 (805)
Q Consensus 704 v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~-~~-~~~~~~----~~L~i~~v~~~d~G~Y~C~a~N~ 772 (805)
...|+.++|.|.+.++-.+...|+|++||+.+..+... .. -+.+++ ..|.|.. ++...|+|.+...
T Consensus 12 ~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~ 83 (94)
T cd05767 12 VELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHW 83 (94)
T ss_pred ccCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeC
Confidence 34467789999999554456799999999987653211 11 122232 3465543 4566999999775
|
IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom |
| >smart00407 IGc1 Immunoglobulin C-Type | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00026 Score=55.24 Aligned_cols=65 Identities=20% Similarity=0.281 Sum_probs=43.1
Q ss_pred eEEEEEEEeecCCCCeEEEEEECCEEccCCCC-eEEE-eeCc----EEEEEEcCCCCCCCEEEEEEEEcCC
Q psy2166 709 IAHFEASLIPVGDQTMTVEFLYNGKPIEASHR-IRTV-HAFG----MVVLEILGTKIEDTGVYTCRATNKW 773 (805)
Q Consensus 709 ~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~-~~~~-~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~ 773 (805)
.++|.|.+.++-.+...|+|+|||+++..+.. .... ..++ .+.|.|.....++...|+|+|.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 37899999943334479999999997543311 1111 1222 2457777767788889999998754
|
|
| >cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00043 Score=56.03 Aligned_cols=65 Identities=14% Similarity=0.154 Sum_probs=43.5
Q ss_pred cCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCC-eEEE-eeCcE----EEEEEcCCCCCCCEEEEEEEEcC
Q psy2166 704 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR-IRTV-HAFGM----VVLEILGTKIEDTGVYTCRATNK 772 (805)
Q Consensus 704 v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~-~~~~-~~~~~----~~L~i~~v~~~d~G~Y~C~a~N~ 772 (805)
+..|...+|.|.+.++-.+...|+|+|||+.+. +.. .... +.+++ ..|.| ...+.-.|+|++...
T Consensus 12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~---~~~~~~~ysC~V~H~ 82 (93)
T cd05770 12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEF---TPTKGDEYACRVRHN 82 (93)
T ss_pred CcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEE---CCCCCCeEEEEEEEC
Confidence 455778899999996555667999999999886 321 1111 22232 23444 456777899999774
|
IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted. |
| >cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE) | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00034 Score=56.94 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=47.8
Q ss_pred CCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCC--eEEEeeCc----EEEEEEcCCCCCCCEEEEEEEEcCCccEEE
Q psy2166 705 SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR--IRTVHAFG----MVVLEILGTKIEDTGVYTCRATNKWGQAEI 778 (805)
Q Consensus 705 ~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~ 778 (805)
..++.++|.|.+.++-.+...|+|++||+.+..+.. .....+++ .+.|.|..-...+...|+|.|.+.....+.
T Consensus 12 ~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~~~ 91 (94)
T cd05847 12 GTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTFED 91 (94)
T ss_pred CCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeeeee
Confidence 345679999999954444579999999998743311 01122223 234667655555678999999887654433
|
IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG. |
| >smart00406 IGv Immunoglobulin V-Type | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00015 Score=57.88 Aligned_cols=61 Identities=18% Similarity=0.321 Sum_probs=42.6
Q ss_pred cEEEEEEEecCCCCCceEEEEECCE--e---c-------------CCCCceEEEec--CcEEEEEEcccccCCCeEEEEE
Q psy2166 83 PLHLEAQVEPKNDPNLKIEWIFNGK--P---L-------------ELGSRFKTTAD--FGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 83 ~v~L~C~~~~~~~p~~~v~W~k~g~--~---i-------------~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
+++|.|.+.....+...+.|++... . + ...+|+.+..+ .+..+|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 4789999984322224799998431 0 1 11346665554 5778999999999999999996
Q ss_pred E
Q psy2166 143 A 143 (805)
Q Consensus 143 a 143 (805)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 3
|
|
| >cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00041 Score=59.60 Aligned_cols=67 Identities=21% Similarity=0.275 Sum_probs=48.3
Q ss_pred ccCCCCeEEEEEEEeecCCC--CeEEEEEEC--C-EE--c------------c--CCCCeEEEeeC--cEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQ--TMTVEFLYN--G-KP--I------------E--ASHRIRTVHAF--GMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p--~~~v~W~~~--g-~~--l------------~--~~~~~~~~~~~--~~~~L~i~~v~~ 759 (805)
.+.+|++++|.|... +.- ...+.|||- | .+ | . -.+|+....+. ..+.|+|.++..
T Consensus 8 ~v~~G~~vtL~C~~~--~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 85 (117)
T cd04981 8 LVKPGQSLKLSCKAS--GFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTP 85 (117)
T ss_pred EEcCCCCEEEEEEEe--CCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCH
Confidence 789999999999986 432 457999982 2 11 1 0 12456555443 456899999999
Q ss_pred CCCEEEEEEEEc
Q psy2166 760 EDTGVYTCRATN 771 (805)
Q Consensus 760 ~d~G~Y~C~a~N 771 (805)
+|+|.|.|.+..
T Consensus 86 ~Dsa~YyCa~~~ 97 (117)
T cd04981 86 EDTAVYYCARGL 97 (117)
T ss_pred HHCEEEEEEEEc
Confidence 999999999875
|
IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains. |
| >PHA03271 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0083 Score=60.25 Aligned_cols=126 Identities=10% Similarity=0.059 Sum_probs=74.2
Q ss_pred CceEEEecC--cEEEEEEcccccCCCeEEEEEEEeCCeeE--EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhc
Q psy2166 113 SRFKTTADF--GFVTLDLTEVYDRDQGIYTCRAWNLAGET--FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLR 188 (805)
Q Consensus 113 ~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~--~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 188 (805)
.+|.+-..+ ....|.|.++...|+|.|+-...+..... .....+.+..
T Consensus 194 ~ky~i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~---------------------------- 245 (490)
T PHA03271 194 NKYFIWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQ---------------------------- 245 (490)
T ss_pred ceeEEeeccccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEe----------------------------
Confidence 345443332 34579999999999997766555543332 2233333332
Q ss_pred CCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCC-CeEEEEEECCEEccCCCcEEEEE---E-----cC
Q psy2166 189 RQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ-TMTVEFLYNGKPIEASHRIRTVH---A-----FG 259 (805)
Q Consensus 189 ~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p-~~~i~W~k~g~~l~~~~~~~~~~---~-----~~ 259 (805)
.||.+...++. +.+|+...-.|.+...-.| ...++||.||.++.......... + ..
T Consensus 246 ------------RPPsVsV~a~P---VL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~ 310 (490)
T PHA03271 246 ------------RPASVDVLAPP---VLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATL 310 (490)
T ss_pred ------------cCCCccccCCc---cccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeE
Confidence 33444443333 6699999999998533222 36899999999886554222211 1 11
Q ss_pred eEEEEEcCCCCcccEEEEEEEE
Q psy2166 260 MVVLEILGTKIEDTGVYTCRAT 281 (805)
Q Consensus 260 ~~~L~i~~~~~~d~G~Y~C~~~ 281 (805)
.++|.+.+...+..=..+|.+.
T Consensus 311 VSTltl~a~~~~~PPsLRCeV~ 332 (490)
T PHA03271 311 VSTITLGNSGIDPPPKISCLVA 332 (490)
T ss_pred EEEEEcccccCCCCCCceEEEE
Confidence 3455554444344458999987
|
|
| >cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00031 Score=57.48 Aligned_cols=72 Identities=13% Similarity=0.148 Sum_probs=44.9
Q ss_pred cccCCCeEEEEEEEeeC-CCCCcEEEEEECCEEc-cCCCc-eEEEeeCCE---EEEEEccCCCCCCEEEEEEEEcCCc
Q psy2166 507 QLKEGQSAHFEARLTPV-TDPDLVVEWFYNGKKL-PHGHR-YRTFHDFGI---VILDILYCYEENSGVYECRATNKYG 578 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~-g~p~~~v~W~~~g~~l-~~~~~-~~~~~~~~~---~~L~i~~v~~~d~G~Y~C~a~n~~g 578 (805)
.+..|+.++|.|.+.++ -++...++|+|||... ..... .....++.. +.|.+..-...+.-.|+|.+.+..-
T Consensus 10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL 87 (96)
T ss_pred HhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence 36779999999999987 6778899999987433 21111 111122222 2355553322344589999988653
|
IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >KOG0613|consensus | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00029 Score=80.98 Aligned_cols=225 Identities=12% Similarity=0.008 Sum_probs=146.3
Q ss_pred CeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeee
Q psy2166 512 QSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSK 591 (805)
Q Consensus 512 ~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 591 (805)
..+.+.|.+ |.|.+...|+.+|+.+..+....+......+.+.|..+-..+.|.|.-.+-|..|....
T Consensus 206 ~~v~~v~s~---gqp~~~~~~~~~g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~--------- 273 (1205)
T KOG0613|consen 206 SRVRAVVSA---GQPEPLERWEILGELIAPGSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRK--------- 273 (1205)
T ss_pred eeEEEEEec---CCCccchhhhhcccccCCCCccccccccchhheeeeEEeecCCCchHHHHhcchhhhcc---------
Confidence 456666766 78999999999999998776665533333333555544456667666655554444332
Q ss_pred eeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeecccccccc
Q psy2166 592 TNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILES 671 (805)
Q Consensus 592 ~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~ 671 (805)
. . +...+.|.+....+.+.|+|...+..++....+...+..... .
T Consensus 274 -~------~------------------------~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~----~ 318 (1205)
T KOG0613|consen 274 -H------K------------------------GGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKG----K 318 (1205)
T ss_pred -c------C------------------------CCccccccccCCccccceeeecccCCcccceeeeEEeecccc----c
Confidence 0 0 111244556667778888888888888877666544432211 1
Q ss_pred ccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeE-EEEEECCEEccCCC--CeEEEeeCc
Q psy2166 672 QLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMT-VEFLYNGKPIEASH--RIRTVHAFG 748 (805)
Q Consensus 672 ~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~-v~W~~~g~~l~~~~--~~~~~~~~~ 748 (805)
..|+...... ......|.+.....+. .+..+..+.+.|... +.+.|. +.|++++.....+. .+.+.+...
T Consensus 319 ~~p~~~~~aa----a~~~~~~v~~~~~~~v-~a~d~~~v~m~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~t 391 (1205)
T KOG0613|consen 319 PGPESLQAAA----ARPPEVPVGLVRNLSV-TARDNTLVEMPTALS--GTQKPDEAQGYHGEEVSSESLGALPCPVGTVT 391 (1205)
T ss_pred cCchhhhhhc----cCCcccccccccccee-ccccCcceeeccccc--CCcCCchheeeccccccccccccccccccccc
Confidence 1121100000 0001333444444555 788899999999998 999987 99999887665554 344455555
Q ss_pred EEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEEeCCC
Q psy2166 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPS 790 (805)
Q Consensus 749 ~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 790 (805)
...+.|..+...+.+.|.|.|.|..|........+|....+.
T Consensus 392 s~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~g 433 (1205)
T KOG0613|consen 392 SHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPG 433 (1205)
T ss_pred CcchhhhhcCcccccccccceeccCCcccccchhhcccccCC
Confidence 667899999999999999999999998888888888765443
|
|
| >KOG0613|consensus | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00079 Score=77.49 Aligned_cols=405 Identities=13% Similarity=0.052 Sum_probs=221.2
Q ss_pred ccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEE
Q psy2166 214 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l 293 (805)
...++....|.|.+ ...+-+-+.|+.++...... + .+.....|.+....+.+.|+|...+..+.....+..
T Consensus 240 ~t~e~s~~~i~~~l--~~~~G~~~~~~~~~l~e~~~------~-~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~ 310 (1205)
T KOG0613|consen 240 VTLEASDRKIQLTL--RAPRGPYSAHILGYLIEQRK------H-KGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTE 310 (1205)
T ss_pred cccchhheeeeEEe--ecCCCchHHHHhcchhhhcc------c-CCCccccccccCCccccceeeecccCCcccceeeeE
Confidence 35677888899988 45666677887765433322 1 122356677777888889999988877665544444
Q ss_pred EEeccCC-----------CCCCeEEecCC--CcccccCCCeEEEEEEEeecCCCCcE-EEEEECCEEccCCC--ceEEEE
Q psy2166 294 ECVDKSK-----------GQPPKFTSHIK--SLEGLKDGDSAHFECTLTPVNDPELK-VEWFHNGKPIFHKN--RVKMVS 357 (805)
Q Consensus 294 ~v~~~~~-----------~~~p~~~~~~~--~~~~~~~g~~~~l~C~~~~~~~p~~~-v~W~~~g~~l~~~~--~~~~~~ 357 (805)
.+..... ..++....... ....+..+..+++.|... +.+.+. +.|++++.....+. .+.+..
T Consensus 311 ~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1205)
T KOG0613|consen 311 EAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALS--GTQKPDEAQGYHGEEVSSESLGALPCPVG 388 (1205)
T ss_pred EeeccccccCchhhhhhccCCccccccccccceeccccCcceeeccccc--CCcCCchheeecccccccccccccccccc
Confidence 3322110 01121111111 112356678899999987 666666 99999877665443 222222
Q ss_pred eCcEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCC
Q psy2166 358 DFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAP 437 (805)
Q Consensus 358 ~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (805)
......+.|..+...+.+.|.|.|.|..|.........|.....
T Consensus 389 ~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~------------------------------------ 432 (1205)
T KOG0613|consen 389 TVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMP------------------------------------ 432 (1205)
T ss_pred cccCcchhhhhcCcccccccccceeccCCcccccchhhcccccC------------------------------------
Confidence 33334577888999999999999999998876655444432111
Q ss_pred ceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEE
Q psy2166 438 KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE 517 (805)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~ 517 (805)
...++.+.....-...+..-+.+.+.
T Consensus 433 ------------------------------------------------------gt~~~~~kk~~~~t~~L~~~~~i~~~ 458 (1205)
T KOG0613|consen 433 ------------------------------------------------------GTQPPKFKKDVSTTDLLTVKDEITVR 458 (1205)
T ss_pred ------------------------------------------------------CCCCccccccccccccccCCcccccc
Confidence 11233333332222223444888999
Q ss_pred EEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcce--EEEEEEEEeeeee--
Q psy2166 518 ARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD--VTKASLKCVSKTN-- 593 (805)
Q Consensus 518 C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~~~-- 593 (805)
|.+..+..|...++|++++-+... +......+....|.+.-....|.|.|.-......|.. .....+.......
T Consensus 459 ~~~~s~~~~~~~~tt~~~~~~~s~--~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~k~~~~~~~~l~~~~s~a~~ 536 (1205)
T KOG0613|consen 459 TPDSSTSMPMTTVTTIKDGLPLSD--RSVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQGKPVPSLDRKLPAAKSSAPK 536 (1205)
T ss_pred cCCCCccccceeEeeccCCccccc--ccccccccchhhheeeccCCCccchhhhhhhccCCCCCCcccccccccccCCcc
Confidence 999854444666777777655432 2222333444557777778899999976665444433 2222232222211
Q ss_pred eeec----CCCCeEEEEECCEEcc-------------CCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEE
Q psy2166 594 LILE----SQLPEVEWFYNGKKLP-------------HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 656 (805)
Q Consensus 594 ~~~~----~~~p~v~W~~~g~~l~-------------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 656 (805)
.+.. ...|.+.|..-..... ...+.-....+ .++.+-.......+..+-.+.+..|....+
T Consensus 537 ~~~~~~~~~g~p~l~~~~~~~E~~~vs~~~~~a~~qlg~~~~~~~r~g--tt~t~~~~~p~~~~~~t~~~k~~~gE~~ps 614 (1205)
T KOG0613|consen 537 PIHTQENQPGTPTLEWEPKPAEASKVSLHYASATRQLGVWRVPESRPG--TTETIGSILPGHEYHVTIKAKNELGESRPS 614 (1205)
T ss_pred cccccccCCCCcccccCCCcccccccchhhhhhhhhccCCcccccCCC--cccccccccccccceeehhhhhcccccCCC
Confidence 1111 1123555553221111 00011111111 234455555666666666666666655433
Q ss_pred E---EEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECC
Q psy2166 657 A---SLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG 732 (805)
Q Consensus 657 ~---~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g 732 (805)
. .+.-.+++. .+.-....+..........+.+......+ ....+......|.+. +.|...+.|.+..
T Consensus 615 ~~~~t~k~~D~~q------~~~~~~~~~~~ks~~~~~k~s~l~~l~k~-~~~a~~~~~~~~~vd--~~~K~kv~~~~~e 684 (1205)
T KOG0613|consen 615 SKSTTLKWQDPSQ------LKRRPVSEPSYKSPDSSQKPSKLVGLSKM-DLPANLESQVKPTVV--SSPKKKVKKKKQE 684 (1205)
T ss_pred CCCcccccccccc------ccccccCCccccccccccchhcccchhhc-cccccceeeeecccc--CCccccccccccc
Confidence 1 111111110 00001112223334445556666666666 677777778888887 8899999998843
|
|
| >PHA03271 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.013 Score=58.99 Aligned_cols=82 Identities=15% Similarity=0.282 Sum_probs=57.0
Q ss_pred eEEEEEcCCCCcccEEEEEEEEcCCee--EEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCC--
Q psy2166 260 MVVLEILGTKIEDTGVYTCRATNKWGQ--AEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE-- 335 (805)
Q Consensus 260 ~~~L~i~~~~~~d~G~Y~C~~~n~~g~--~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~-- 335 (805)
...|.|+++...++|.|.....+.... ....+.+.+.. -||.+...+.+ +..|+...-.|.+.. -+|.
T Consensus 206 ~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~----RPPsVsV~a~P---VL~Ge~YkAtC~vAn-YYPP~S 277 (490)
T PHA03271 206 TMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQ----RPASVDVLAPP---VLSGENYKASCIVRH-FYPPGS 277 (490)
T ss_pred eeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEe----cCCCccccCCc---cccCCCceEEEEeee-ecCCCc
Confidence 357999999999999775555543322 24445555544 46666655554 568999999999975 3443
Q ss_pred cEEEEEECCEEccC
Q psy2166 336 LKVEWFHNGKPIFH 349 (805)
Q Consensus 336 ~~v~W~~~g~~l~~ 349 (805)
..+.|++||.++..
T Consensus 278 vrlrWf~nG~~V~~ 291 (490)
T PHA03271 278 VYVSWRQNGNIATP 291 (490)
T ss_pred eEEEEEeCCccccC
Confidence 56999999998753
|
|
| >cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00065 Score=55.37 Aligned_cols=74 Identities=14% Similarity=0.242 Sum_probs=48.8
Q ss_pred CcEEEEEEEecCCCCCceEEEEECCE----ecC-------------CCCceEEEe-cCcEEEEEEcccccCCCeEEEEEE
Q psy2166 82 QPLHLEAQVEPKNDPNLKIEWIFNGK----PLE-------------LGSRFKTTA-DFGFVTLDLTEVYDRDQGIYTCRA 143 (805)
Q Consensus 82 ~~v~L~C~~~~~~~p~~~v~W~k~g~----~i~-------------~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a 143 (805)
++++|.|.... ......|+|.|-.. .+. ..+|..... .....+|.|.+++.+|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~-~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~ 79 (96)
T cd05889 1 EKMKLECVYPK-TGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSL 79 (96)
T ss_pred CCEEEEeEcCC-CCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEE
Confidence 47899999874 34577899998421 111 012443321 123458999999999999999999
Q ss_pred Ee-CCeeEEEEEEE
Q psy2166 144 WN-LAGETFTSTTI 156 (805)
Q Consensus 144 ~n-~~g~~~~~~~l 156 (805)
.. ..|..+..+.|
T Consensus 80 ~t~P~g~~~~~i~~ 93 (96)
T cd05889 80 VTYPQGSWEKVIEV 93 (96)
T ss_pred EeCCCCCeEEEEEE
Confidence 65 46666555443
|
Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes. |
| >cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00063 Score=55.67 Aligned_cols=73 Identities=10% Similarity=0.090 Sum_probs=46.2
Q ss_pred CceecCCCcEEEEEEEecC-CCCCceEEEEECCEec-CCCC-ceEEEecCc---EEEEEEcccccCCCeEEEEEEEeCC
Q psy2166 75 EFKLGEAQPLHLEAQVEPK-NDPNLKIEWIFNGKPL-ELGS-RFKTTADFG---FVTLDLTEVYDRDQGIYTCRAWNLA 147 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~-~~p~~~v~W~k~g~~i-~~~~-~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~n~~ 147 (805)
...+..|+.++|.|.+.+. -.+...|+|+|||+.. .... ......++. .+.|.+.....++.-.|.|.+.+..
T Consensus 8 ~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 8 PKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred HHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence 4466779999999999976 4567789999987433 2110 111111221 2256666555445668999998864
|
IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00041 Score=55.47 Aligned_cols=69 Identities=22% Similarity=0.334 Sum_probs=48.6
Q ss_pred ccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEE-E-eeCC----EEEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT-F-HDFG----IVILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~-~-~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
...++.++|.|.+.++-+....|+|++||+.+........ . ..++ .+.|.+. ..+...|+|.+.+....
T Consensus 5 ~~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 5 EELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp HHSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred ccCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 3459999999999987677889999999999876533222 2 2233 2235555 56666999999886543
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A .... |
| >cd00096 Ig Immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00044 Score=53.10 Aligned_cols=62 Identities=27% Similarity=0.383 Sum_probs=46.6
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCce----EEEeeCCEEEEEEccCCCCCCEEEEEEEEcCC
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY----RTFHDFGIVILDILYCYEENSGVYECRATNKY 577 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~----~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 577 (805)
++|.|.+. +.+.+.+.|++++......... ..........|.|.++..+|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~--~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLAS--GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEec--CCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 47899998 5788899999998876543211 11122345579999999999999999998876
|
Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. |
| >PHA03269 envelope glycoprotein C; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0071 Score=62.04 Aligned_cols=168 Identities=18% Similarity=0.221 Sum_probs=91.0
Q ss_pred cEEEEEEcccccCCCeEEEEEEEeC-CeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCC
Q psy2166 122 GFVTLDLTEVYDRDQGIYTCRAWNL-AGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDG 200 (805)
Q Consensus 122 ~~~~L~I~~~~~~D~G~Y~C~a~n~-~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (805)
+...|.|.+++..++|.|.=++.+. .+.......++|..-
T Consensus 287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y--------------------------------------- 327 (566)
T PHA03269 287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY--------------------------------------- 327 (566)
T ss_pred CccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe---------------------------------------
Confidence 4557999999999999998666533 233333334443321
Q ss_pred CCCceecccccccccCCCceEEEEEEEeeCCCC-CeEEEEEECCEEccCCCcEE--EEEEcC----eEEEEEcCCCCcc-
Q psy2166 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ-TMTVEFLYNGKPIEASHRIR--TVHAFG----MVVLEILGTKIED- 272 (805)
Q Consensus 201 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p-~~~i~W~k~g~~l~~~~~~~--~~~~~~----~~~L~i~~~~~~d- 272 (805)
.+|.+...+.. +.+|+...-.|.+...-.| ...++||.||.++....... ....+| .++|.+......|
T Consensus 328 r~PsVsV~p~P---VL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~ 404 (566)
T PHA03269 328 KRPNITVIGDP---VLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADY 404 (566)
T ss_pred cCCCccccCCc---cccCCCceEEEEeeeecCCCceEEEEEeCCcccCccccccceeecCCCceEEEEEEeccCccccCC
Confidence 22333333322 6799999999998533222 36899999999887532111 111222 3455553222222
Q ss_pred -cEEEEEEEEc-CCeeEE----EEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCC--cEEEEEECC
Q psy2166 273 -TGVYTCRATN-KWGQAE----ISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE--LKVEWFHNG 344 (805)
Q Consensus 273 -~G~Y~C~~~n-~~g~~~----~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~--~~v~W~~~g 344 (805)
.-..+|.+.= ..+... .++.-.|+ .+|.+... +..| ...|.+. --|. ..+.|+.++
T Consensus 405 ~PPsLrCeV~W~RDsVS~tRfnAaatP~VY-----~~PtISm~------FedG---~AVCtA~--CVP~~~V~l~WlVgD 468 (566)
T PHA03269 405 PPPAIQCNVLWIRDGVSHMKYSAAVTPDVY-----PFPNVSIE------IIDG---HIVCLAK--CVPRGVVHFNWWIND 468 (566)
T ss_pred CCCCceEEEEEccCCchheecccccCCccc-----cCCeEEEE------EeCC---EEEEecc--cccCCCceEEEEecC
Confidence 3466999872 222222 22222222 44554432 2222 2346664 3433 589999877
Q ss_pred EEc
Q psy2166 345 KPI 347 (805)
Q Consensus 345 ~~l 347 (805)
...
T Consensus 469 ~p~ 471 (566)
T PHA03269 469 IPI 471 (566)
T ss_pred CCC
Confidence 664
|
|
| >smart00406 IGv Immunoglobulin V-Type | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00038 Score=55.42 Aligned_cols=59 Identities=20% Similarity=0.248 Sum_probs=41.8
Q ss_pred eEEEEEEEeecCCCC--eEEEEEECCE-----Ec-------------cCCCCeEEEee--CcEEEEEEcCCCCCCCEEEE
Q psy2166 709 IAHFEASLIPVGDQT--MTVEFLYNGK-----PI-------------EASHRIRTVHA--FGMVVLEILGTKIEDTGVYT 766 (805)
Q Consensus 709 ~~~l~C~~~~~g~p~--~~v~W~~~g~-----~l-------------~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~ 766 (805)
++.|.|.+. .... ..+.|++... .+ ...+|+.+... .+...|+|.+++.+|+|.|.
T Consensus 1 ~v~l~C~~~--~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 78 (81)
T smart00406 1 SVTLSCKAS--GFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYY 78 (81)
T ss_pred CEEEEEEEe--ccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEE
Confidence 478999998 4433 4899998431 01 11245555544 56789999999999999999
Q ss_pred EEE
Q psy2166 767 CRA 769 (805)
Q Consensus 767 C~a 769 (805)
|.+
T Consensus 79 C~v 81 (81)
T smart00406 79 CAV 81 (81)
T ss_pred EcC
Confidence 963
|
|
| >KOG1480|consensus | Back alignment and domain information |
|---|
Probab=97.52 E-value=3e-05 Score=83.07 Aligned_cols=89 Identities=21% Similarity=0.253 Sum_probs=71.7
Q ss_pred ecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCc-
Q psy2166 696 SEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG- 774 (805)
Q Consensus 696 ~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G- 774 (805)
..+.-. .|..+...++.|... .+.|...++|+|++..+.+...+....+.+ |+|..++..|.|+|+|+|.|-++
T Consensus 134 ~~p~~q-~V~~~s~~~l~cr~p-e~~paae~~w~k~e~~~~pd~n~~~~~d~~---li~~~arlsd~~nytc~a~ni~~~ 208 (909)
T KOG1480|consen 134 QSPVGQ-EVQEETTLQLPCRPP-EGDPKAEVEWLKNEVVIDPDANVIRASDHN---LIISQARLSDSGNYTCEATNIVAK 208 (909)
T ss_pred cChhhh-eecccccccccccCc-ccchhhhhhccccCCCCCccccchhhhcCC---ccccchhhhhcccceeeeehhhcc
Confidence 334444 788899999999876 588999999999999988866666555554 99999999999999999999998
Q ss_pred cEEEEEEEEEEEeCC
Q psy2166 775 QAEISVNLECVVWSP 789 (805)
Q Consensus 775 ~~~~~~~l~V~~~~~ 789 (805)
.-..++++.|.+..-
T Consensus 209 r~~~~~~v~vyv~gg 223 (909)
T KOG1480|consen 209 RKSDPATVQVYVNGG 223 (909)
T ss_pred ccccceEEEEEEcCc
Confidence 666677777777543
|
|
| >cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00037 Score=56.72 Aligned_cols=83 Identities=18% Similarity=0.151 Sum_probs=50.2
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCC-CCCcEEEEEECCEEccCC-CceEEEeeCCEE---EEEEccCCCCCCEEE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHG-HRYRTFHDFGIV---ILDILYCYEENSGVY 569 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g-~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~---~L~i~~v~~~d~G~Y 569 (805)
.|.+.+.++....+..+..++|.|.+.++- .....|+|.+||.. ... .......++.++ .|.|..-.......|
T Consensus 3 ~PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~y 81 (99)
T cd04986 3 KPSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPF 81 (99)
T ss_pred CCEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeE
Confidence 456655555444466789999999999765 45789999999875 111 011111233333 455542222233479
Q ss_pred EEEEEcCCc
Q psy2166 570 ECRATNKYG 578 (805)
Q Consensus 570 ~C~a~n~~g 578 (805)
+|.+.+...
T Consensus 82 tC~V~H~~l 90 (99)
T cd04986 82 ACTVTHPEG 90 (99)
T ss_pred EEEEECCCc
Confidence 999998754
|
IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0006 Score=55.15 Aligned_cols=70 Identities=9% Similarity=-0.022 Sum_probs=48.7
Q ss_pred ccCCCCeEEE-EEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCc---EEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy2166 703 NLSEGEIAHF-EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG---MVVLEILGTKIEDTGVYTCRATNKWG 774 (805)
Q Consensus 703 ~v~~G~~~~l-~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~G 774 (805)
.+.+|+.+.+ .|.+. .|.|++.|+|+.+..... ........++. .+.|.+..-+.+|.-.++|.+.+..=
T Consensus 12 ~~~~g~~~~vA~C~sa-~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 12 LIDGGNGTTLAACCAA-EGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred EeecCcceeEEEEEcc-CCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 6789999999 99987 589999999998743221 11111111111 23577877778888999999998843
|
Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect |
| >cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0004 Score=50.79 Aligned_cols=61 Identities=13% Similarity=0.239 Sum_probs=44.3
Q ss_pred CCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 706 EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
..+.|.|.|.+. .+|+|++ |..+.... ..+|.|.++..|-.|.|.|.++| ...+..|.|.
T Consensus 5 ~~~~V~L~C~~~------tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVy 64 (69)
T cd07691 5 SEGKVFLKCNGA------TNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVY 64 (69)
T ss_pred cCceEEEEecCC------CcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc----CCCcEEEEEE
Confidence 356899999742 3599999 55443321 12699999999999999999988 4455667776
Q ss_pred E
Q psy2166 786 V 786 (805)
Q Consensus 786 ~ 786 (805)
+
T Consensus 65 Y 65 (69)
T cd07691 65 Y 65 (69)
T ss_pred E
Confidence 5
|
Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0014 Score=53.45 Aligned_cols=70 Identities=14% Similarity=0.082 Sum_probs=44.0
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCce-EEEecCcE----EEEEEcccccCCCeEEEEEEEeC
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRF-KTTADFGF----VTLDLTEVYDRDQGIYTCRAWNL 146 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~-~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~n~ 146 (805)
..++..+..++|.|.+.+.-.+...|+|+|||+.+..+... ....+++. +.|.|..-. ....|+|.+.+.
T Consensus 10 ~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H~ 84 (96)
T cd07697 10 KKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKHE 84 (96)
T ss_pred HHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchh--CCCeEEEEEEEC
Confidence 34556678899999999754457789999999987644211 11112212 245554432 234599999874
|
IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. |
| >cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0016 Score=53.15 Aligned_cols=67 Identities=9% Similarity=0.080 Sum_probs=43.5
Q ss_pred CCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc--eEEEe-eCC---EEEEEEccCCCCCCEEEEEEEEcCC
Q psy2166 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR--YRTFH-DFG---IVILDILYCYEENSGVYECRATNKY 577 (805)
Q Consensus 510 ~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~-~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~ 577 (805)
.++.++|.|.+.++-++...|+|+|||+. ..+.. ..... ++. .+.|.+..........|+|.+.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 56779999999987677889999999998 33211 01122 233 2235555432223568999998864
|
IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0016 Score=52.95 Aligned_cols=73 Identities=7% Similarity=-0.039 Sum_probs=47.4
Q ss_pred CeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCc---EEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEE
Q psy2166 708 EIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG---MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782 (805)
Q Consensus 708 ~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 782 (805)
....+.|.+. .|.|.+.|+|+++...... .......++. .+.|.+..-..+|+..|+|+|.|..-.......+
T Consensus 16 ~~~va~C~s~-~gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~ 91 (95)
T cd07703 16 PVPVAKCVSA-NGRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV 91 (95)
T ss_pred ccEEEEEEcC-CCCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 4589999887 5899999999998211100 0111112222 3468887777888889999999987544444433
|
Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. |
| >cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0023 Score=52.22 Aligned_cols=68 Identities=9% Similarity=0.042 Sum_probs=43.6
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEE-Ee-eCC---EEEEEEccCCCCCCEEEEEEEEcCCcceEE
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT-FH-DFG---IVILDILYCYEENSGVYECRATNKYGSDVT 582 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~-~~-~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 582 (805)
.....+.|.+.+ |+|.++|+|+++ +........ .. ++. .+.|.+.....+|...|+|.+.|..-....
T Consensus 15 ~~~~va~C~s~~-gkP~a~ItW~~~---~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~ 87 (95)
T cd05719 15 EPVTVATCVSAN-GKPPATISWETT---LGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQ 87 (95)
T ss_pred CccEEEEEECCC-CcCCCEEEEEeC---CCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCe
Confidence 456789999986 899999999997 211111111 11 121 346777655555566999999998754433
|
Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus |
| >PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0011 Score=53.02 Aligned_cols=68 Identities=19% Similarity=0.233 Sum_probs=47.3
Q ss_pred cCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEE-E-eeCcE----EEEEEcCCCCCCCEEEEEEEEcCCc
Q psy2166 704 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT-V-HAFGM----VVLEILGTKIEDTGVYTCRATNKWG 774 (805)
Q Consensus 704 v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~-~-~~~~~----~~L~i~~v~~~d~G~Y~C~a~N~~G 774 (805)
...++.++|.|.+.++..+...|+|++||+.+........ . ..++. +.|.+. .++...|+|++.+...
T Consensus 5 ~~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 5 EELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp HHSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred ccCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 3459999999999965555568999999998876543221 2 23443 346665 5566699999988654
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A .... |
| >cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0015 Score=52.80 Aligned_cols=74 Identities=9% Similarity=0.015 Sum_probs=47.5
Q ss_pred CCcccccCCCeEEE-EEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCC---EEEEEEccCCCCCCEEEEEEEEcCCc
Q psy2166 503 SDVTQLKEGQSAHF-EARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG---IVILDILYCYEENSGVYECRATNKYG 578 (805)
Q Consensus 503 ~~~~~v~~G~~v~L-~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g 578 (805)
.....+.+|+.+.+ .|.+.+ |+|.++|+|+.+..... ........++. .+.|.+.....+|.-.++|.+.+..-
T Consensus 8 ~~~~~~~~g~~~~vA~C~sa~-gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al 85 (97)
T cd07704 8 GPSLLIDGGNGTTLAACCAAE-GRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPAL 85 (97)
T ss_pred CCeeEeecCcceeEEEEEccC-CccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCccc
Confidence 33344789999999 999987 99999999998732221 10111111121 23466665455566699999998754
|
Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect |
| >cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0007 Score=49.30 Aligned_cols=51 Identities=24% Similarity=0.376 Sum_probs=36.7
Q ss_pred CCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEc
Q psy2166 705 SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 771 (805)
Q Consensus 705 ~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N 771 (805)
..|.+|+|+|... +.. +.|++|+..+..+.. .+.+.+-. ++.|.|.|.+.+
T Consensus 5 isGTtVtlTCP~~--~~~---i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLS--GDD---IKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCC--CCC---ceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCC
Confidence 4589999999865 222 999999976655322 24444555 899999999965
|
Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4) | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0037 Score=51.92 Aligned_cols=68 Identities=10% Similarity=0.135 Sum_probs=50.1
Q ss_pred CceecCCCcEEEEEEEecCCCCC-ceEEEEEC--CEec--------------CCCCceEEEec--CcEEEEEEcccccCC
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPN-LKIEWIFN--GKPL--------------ELGSRFKTTAD--FGFVTLDLTEVYDRD 135 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~k~--g~~i--------------~~~~~~~~~~~--~~~~~L~I~~~~~~D 135 (805)
...+..|..++|.|++++..... ..+.|+|. | .+ ...+|+..+.+ +...+|.|.+++.+|
T Consensus 7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~D 85 (115)
T cd05721 7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQ 85 (115)
T ss_pred CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHH
Confidence 45788899999999998655555 67899983 3 21 01234444433 467899999999999
Q ss_pred CeEEEEEE
Q psy2166 136 QGIYTCRA 143 (805)
Q Consensus 136 ~G~Y~C~a 143 (805)
++.|.|..
T Consensus 86 Ta~Y~Ca~ 93 (115)
T cd05721 86 TDIYFCKI 93 (115)
T ss_pred CeEEEEEe
Confidence 99999986
|
IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased |
| >cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4) | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0034 Score=52.11 Aligned_cols=67 Identities=12% Similarity=0.156 Sum_probs=47.7
Q ss_pred ccCCCCeEEEEEEEeecCCCC-eEEEEEEC--C------------EEc-cCCCCeEE--EeeCcEEEEEEcCCCCCCCEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT-MTVEFLYN--G------------KPI-EASHRIRT--VHAFGMVVLEILGTKIEDTGV 764 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~-~~v~W~~~--g------------~~l-~~~~~~~~--~~~~~~~~L~i~~v~~~d~G~ 764 (805)
.+.+|+.++|.|.+.+.+... -.+.|+|. | ... ...+++.+ ..+.....|+|.+++.+|++.
T Consensus 9 lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~DTa~ 88 (115)
T cd05721 9 LASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRANQTDI 88 (115)
T ss_pred EEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHHHCeE
Confidence 688899999999998444455 67899982 2 111 11234433 333557899999999999999
Q ss_pred EEEEE
Q psy2166 765 YTCRA 769 (805)
Q Consensus 765 Y~C~a 769 (805)
|.|..
T Consensus 89 Y~Ca~ 93 (115)
T cd05721 89 YFCKI 93 (115)
T ss_pred EEEEe
Confidence 99975
|
IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased |
| >cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00089 Score=48.79 Aligned_cols=52 Identities=17% Similarity=0.279 Sum_probs=36.4
Q ss_pred cCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeC
Q psy2166 79 GEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNL 146 (805)
Q Consensus 79 ~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 146 (805)
..|..|+|+|... +. .+.|++|+..+..... .+.+.+-. ++.|.|.|.+.+.
T Consensus 5 isGTtVtlTCP~~--~~---~i~W~~n~~~~~g~~~----------~~~~~~~~-e~~G~Y~C~~~~~ 56 (65)
T cd07692 5 ISGTTVTVTCPLS--GD---DIKWKKNDQVSQGSDE----------KYLSLNHF-SSSGYYHCTADNA 56 (65)
T ss_pred EeccEEEEECCCC--CC---CceEEeCCccCCCCCc----------eEEeeccC-CCCceEEEEeCCC
Confidence 4699999999865 12 3999999976654322 23333444 8899999999643
|
Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0043 Score=50.57 Aligned_cols=81 Identities=10% Similarity=-0.014 Sum_probs=48.3
Q ss_pred CeEEecCCCCceecCCCcEEEEEEEecCC-CCCceEEEEECCEecCCC-CceEEEecCc---EEEEEEcccccCCCeEEE
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKN-DPNLKIEWIFNGKPLELG-SRFKTTADFG---FVTLDLTEVYDRDQGIYT 140 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~~~~~~-~p~~~v~W~k~g~~i~~~-~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~ 140 (805)
|.+.+-++....+..+..++|.|.+.+.- .....|+|.+||+. ... .......++. .+.|.|..-.-.-...|+
T Consensus 4 PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~yt 82 (99)
T cd04986 4 PSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFA 82 (99)
T ss_pred CEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEE
Confidence 44434344445666899999999999753 33678999999875 110 0001111221 225666544444455799
Q ss_pred EEEEeCC
Q psy2166 141 CRAWNLA 147 (805)
Q Consensus 141 C~a~n~~ 147 (805)
|++.+..
T Consensus 83 C~V~H~~ 89 (99)
T cd04986 83 CTVTHPE 89 (99)
T ss_pred EEEECCC
Confidence 9998764
|
IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >PHA02982 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0034 Score=56.63 Aligned_cols=84 Identities=13% Similarity=0.196 Sum_probs=61.6
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECC-EecC----------C--------CCceEEEecCcEEEEEEcccccCC
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG-KPLE----------L--------GSRFKTTADFGFVTLDLTEVYDRD 135 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g-~~i~----------~--------~~~~~~~~~~~~~~L~I~~~~~~D 135 (805)
++....|+.|.|.|... .+.......|+++. ..+. . ...+.++-++..++|+|.++..+.
T Consensus 33 dv~a~vd~~V~L~C~~~-~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N 111 (251)
T PHA02982 33 DVNATVDQEVKLQCLFK-DADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQN 111 (251)
T ss_pred hhhccCCCcEEEEecCC-CcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCccc
Confidence 45667899999999954 34556678999853 2332 1 234667778889999999999999
Q ss_pred CeEEEEEEEeCCeeE-EEEEEEEEe
Q psy2166 136 QGIYTCRAWNLAGET-FTSTTIYCS 159 (805)
Q Consensus 136 ~G~Y~C~a~n~~g~~-~~~~~l~V~ 159 (805)
.|.|.|.+....+.. .....+.|+
T Consensus 112 ~GCYtc~~ks~~~k~E~c~kCl~V~ 136 (251)
T PHA02982 112 LGCFTCEAKDAEGKEETCEKCLEIQ 136 (251)
T ss_pred CCceEEEEecCCCchheeheeeeEe
Confidence 999999999866444 335556664
|
|
| >cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0038 Score=50.98 Aligned_cols=67 Identities=4% Similarity=0.044 Sum_probs=41.5
Q ss_pred CCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCC--eEEEe-eCc---EEEEEEcCCCCCCCEEEEEEEEcCC
Q psy2166 706 EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR--IRTVH-AFG---MVVLEILGTKIEDTGVYTCRATNKW 773 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~-~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~ 773 (805)
.++.++|.|.+.++-.+...|+|+|||+. ..+.. -.+.. ++. .+.|+|........-.|+|.+....
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 46779999999955445678999999998 33211 01122 222 2345554433223568999998754
|
IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. |
| >cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0048 Score=50.19 Aligned_cols=72 Identities=8% Similarity=0.002 Sum_probs=44.8
Q ss_pred CeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCC---EEEEEEccCCCCCCEEEEEEEEcCCcceEEEEE
Q psy2166 512 QSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG---IVILDILYCYEENSGVYECRATNKYGSDVTKAS 585 (805)
Q Consensus 512 ~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 585 (805)
..+.++|.+.+ |+|.++|+|+++...... .......++. .+.|.+.....+|...|+|+|.|..-.....+.
T Consensus 16 ~~~va~C~s~~-gkPaa~IsW~~~~~g~~~-~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~ 90 (95)
T cd07703 16 PVPVAKCVSAN-GRPPARISWSSTLGGNAN-TTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLP 90 (95)
T ss_pred ccEEEEEEcCC-CCCCcEEEEEcCCCCCee-EEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEE
Confidence 45789999987 899999999987211100 0111111222 345777654555566999999998755444433
|
Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. |
| >cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.005 Score=49.43 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=43.3
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEECCEEccCCCCeEE----EeeCcEEEEEEcCCCCCCCEEEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLYNGKPIEASHRIRT----VHAFGMVVLEILGTKIEDTGVYTCRAT 770 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~~g~~l~~~~~~~~----~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 770 (805)
.+.+|..+++.|.+. .+.|. ..|.|+++...+.......- ........+++...+.||.-.|+|.|.
T Consensus 11 ~l~~G~~vtv~C~v~-~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~ 83 (99)
T cd07689 11 PLEEGKPVTVKCEVP-DVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAK 83 (99)
T ss_pred cccCCceEEEEEEec-CcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEE
Confidence 467899999999997 35676 78999997776654432110 001122456665544445559999993
|
Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains. |
| >KOG4597|consensus | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0021 Score=65.48 Aligned_cols=93 Identities=17% Similarity=0.093 Sum_probs=71.6
Q ss_pred CeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEE---CCEE--ccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEE
Q psy2166 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY---NGKP--IEASHRIRTVHAFGMVVLEILGTKIEDTGVYT 766 (805)
Q Consensus 692 P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~---~g~~--l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 766 (805)
|.+..-+..+ .+..|+++.+.|-+. |.|.+.|+|.+ |++. +.++..+..-.......|.|-+....|+|+|+
T Consensus 197 c~l~~cpa~w-~vg~wetcS~tCg~~--G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~t 273 (560)
T KOG4597|consen 197 CALVDCPAEW-FVGDWETCSSTCGVQ--GRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYT 273 (560)
T ss_pred cccccCcchh-hcccchhhccccccc--CCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCcee
Confidence 6777778888 899999999999998 99999999987 4432 22221111111112346999999999999999
Q ss_pred EEEEcCCccEEEEEEEEEEEe
Q psy2166 767 CRATNKWGQAEISVNLECVVW 787 (805)
Q Consensus 767 C~a~N~~G~~~~~~~l~V~~~ 787 (805)
|.|.|.+|.....+.+.+...
T Consensus 274 Cs~rcg~g~~~rdv~c~s~~g 294 (560)
T KOG4597|consen 274 CSARCGAGFLRRDVPCSSVKG 294 (560)
T ss_pred eccccccceeeccceeeeecc
Confidence 999999999999999888654
|
|
| >KOG1480|consensus | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00098 Score=71.95 Aligned_cols=190 Identities=21% Similarity=0.284 Sum_probs=107.9
Q ss_pred hcCccccCCCCCCCCcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecC------
Q psy2166 48 LAGKYQRQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF------ 121 (805)
Q Consensus 48 d~g~y~c~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~------ 121 (805)
|.|.|--........ ..|.|+..+. .--+..|.++.|.|.+. |.+++...-+++-+....+..+...+
T Consensus 8 ~~~~~~~~~~~~a~g-~l~~~~~~p~-~~yii~~~p~~l~c~a~----~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~ 81 (909)
T KOG1480|consen 8 DNGEALPESIPSAPG-DLPHFTTEPK-SAYIIKNKPLRLQCKAN----PATQIRFKCNSEWVHQSRHEKLEGTDETSGLG 81 (909)
T ss_pred CchhhccccCCCCCC-CcceeeecCC-ccceecCCCccceecCC----cccccccccChhhhcCccceeeeccCccccee
Confidence 344443333333333 6688887776 45678999999999975 55555544455555444332222111
Q ss_pred -cEEEEEEcccccCCCe---EEEEE--EEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCC
Q psy2166 122 -GFVTLDLTEVYDRDQG---IYTCR--AWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVP 195 (805)
Q Consensus 122 -~~~~L~I~~~~~~D~G---~Y~C~--a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 195 (805)
......|..-+.++.| .|.|+ |....|...+. . ...++..+....
T Consensus 82 ~~~~si~Isr~~v~~~~~~~d~~cQc~a~~~~g~~~s~------~---------------a~vr~ay~rk~f-------- 132 (909)
T KOG1480|consen 82 VREVSIDISRQQVETSGGPEDYWCQCVAWSDDGTVKSR------K---------------ATVRIAYLRKHF-------- 132 (909)
T ss_pred EEeeeeeeehhhhhcccCccceeeeeeeecCCCcchhh------h---------------HHHHHHHHHHhh--------
Confidence 1223444444444433 46554 44444421111 0 011111111111
Q ss_pred CCCCCCCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEE
Q psy2166 196 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGV 275 (805)
Q Consensus 196 ~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 275 (805)
...+.. ..|..+....+.|.. +.+.|...+.|+|++..+....+...... ..|++..+...|.|.
T Consensus 133 ----------~~~p~~-q~V~~~s~~~l~cr~-pe~~paae~~w~k~e~~~~pd~n~~~~~d---~~li~~~arlsd~~n 197 (909)
T KOG1480|consen 133 ----------EQSPVG-QEVQEETTLQLPCRP-PEGDPKAEVEWLKNEVVIDPDANVIRASD---HNLIISQARLSDSGN 197 (909)
T ss_pred ----------ccChhh-heecccccccccccC-cccchhhhhhccccCCCCCccccchhhhc---CCccccchhhhhccc
Confidence 111111 136778888899976 36888899999999998877444332222 358999999999999
Q ss_pred EEEEEEcCCeeE
Q psy2166 276 YTCRATNKWGQA 287 (805)
Q Consensus 276 Y~C~~~n~~g~~ 287 (805)
|+|+|.|..+..
T Consensus 198 ytc~a~ni~~~r 209 (909)
T KOG1480|consen 198 YTCEATNIVAKR 209 (909)
T ss_pred ceeeeehhhccc
Confidence 999999876543
|
|
| >cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0035 Score=45.98 Aligned_cols=61 Identities=15% Similarity=0.293 Sum_probs=41.2
Q ss_pred CCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEe
Q psy2166 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 510 ~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
..+.|.|+|.+. -.|+|++ |..+.... ..+|.+-+...+-.|.|.|.+++ ......|.|.
T Consensus 5 ~~~~V~L~C~~~------tsi~W~k-G~~~~~~~---------~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQVy 64 (69)
T cd07691 5 SEGKVFLKCNGA------TNITWKK-GKEILEVS---------NTLLDLGSRINDPRGTYSCKESE----PNKEKTLQVY 64 (69)
T ss_pred cCceEEEEecCC------CcEEEec-Cccccccc---------ccEEeccCcccCCCcceEecCcc----CCCcEEEEEE
Confidence 456799999652 2599999 65553221 22588888778889999999877 2344455554
Q ss_pred e
Q psy2166 590 S 590 (805)
Q Consensus 590 ~ 590 (805)
.
T Consensus 65 Y 65 (69)
T cd07691 65 Y 65 (69)
T ss_pred E
Confidence 3
|
Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex. |
| >cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.008 Score=48.28 Aligned_cols=67 Identities=25% Similarity=0.321 Sum_probs=42.8
Q ss_pred eecCCCcEEEEEEEecCCCCC--ceEEEEECCEecCCCCceEE-----EecCcEEEEEEcccccCCCe-EEEEEEEeC
Q psy2166 77 KLGEAQPLHLEAQVEPKNDPN--LKIEWIFNGKPLELGSRFKT-----TADFGFVTLDLTEVYDRDQG-IYTCRAWNL 146 (805)
Q Consensus 77 ~v~~G~~v~L~C~~~~~~~p~--~~v~W~k~g~~i~~~~~~~~-----~~~~~~~~L~I~~~~~~D~G-~Y~C~a~n~ 146 (805)
.+.+|..++|.|.+.+ +.|. ..|.|+|....+.... +.- ........++|... ++|.| .|.|+|...
T Consensus 11 ~l~~G~~vtv~C~v~~-v~P~~~l~v~LlkG~~~l~~~~-f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~ 85 (99)
T cd07689 11 PLEEGKPVTVKCEVPD-VYPFDRLEIELLKGETLLPSKS-FLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH 85 (99)
T ss_pred cccCCceEEEEEEecC-cccCCceEEEEecCcceecccc-cccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence 4589999999999985 3444 7799998766655332 111 11112234555554 56665 999999654
|
Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains. |
| >PHA02633 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0054 Score=43.75 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=32.3
Q ss_pred EEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEEeC
Q psy2166 751 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWS 788 (805)
Q Consensus 751 ~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 788 (805)
.|-|-++..+|+|.|.|+.+|.-=....++.|+|....
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 68899999999999999999977777888888886543
|
|
| >PHA02633 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0049 Score=43.94 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=33.8
Q ss_pred EEEEcccccCCCeEEEEEEEeCCeeEEEEEEEEEeccc
Q psy2166 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKE 162 (805)
Q Consensus 125 ~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 162 (805)
.|.|.++..+|+|.|.|..+|..-..+.+..|+|..+.
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 69999999999999999999988888888899887653
|
|
| >PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.011 Score=50.30 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=47.8
Q ss_pred CCCcEEEEEEEecC---CCCCceEEEEECCEecCC--CC----------ceEE-EecCcEEEEEEcccccCCCeEEEEEE
Q psy2166 80 EAQPLHLEAQVEPK---NDPNLKIEWIFNGKPLEL--GS----------RFKT-TADFGFVTLDLTEVYDRDQGIYTCRA 143 (805)
Q Consensus 80 ~G~~v~L~C~~~~~---~~p~~~v~W~k~g~~i~~--~~----------~~~~-~~~~~~~~L~I~~~~~~D~G~Y~C~a 143 (805)
=+++|.|+|.+... ..+...|.|.++|..+-. +. +..+ ....|..+|.+...+.- .|.|+|.+
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV 104 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV 104 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence 47899999999731 124567999999877631 11 1111 11135567888886655 89999999
Q ss_pred EeCCeeEEEEEEEEE
Q psy2166 144 WNLAGETFTSTTIYC 158 (805)
Q Consensus 144 ~n~~g~~~~~~~l~V 158 (805)
.....+.+....|..
T Consensus 105 t~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 105 TELSREGETTIELKY 119 (130)
T ss_dssp EETTEEEEEEEEEEE
T ss_pred EecCCCceEEEEEEE
Confidence 988777777776665
|
; PDB: 2VSC_B 2JJS_D 2JJT_C. |
| >PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0038 Score=53.11 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=48.3
Q ss_pred ccCCCCeEEEEEEEeecC-----CCCeEEEEEECCEEccCC---CCeE---------E-EeeCcEEEEEEcCCCCCCCEE
Q psy2166 703 NLSEGEIAHFEASLIPVG-----DQTMTVEFLYNGKPIEAS---HRIR---------T-VHAFGMVVLEILGTKIEDTGV 764 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g-----~p~~~v~W~~~g~~l~~~---~~~~---------~-~~~~~~~~L~i~~v~~~d~G~ 764 (805)
...-++++.|.|.+. . -+...|+|.++|+.+-.- .... + .--.|.+.|.+...+.- .|.
T Consensus 23 ~t~CN~tV~IPC~v~--n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~Gn 99 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVN--NLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGN 99 (130)
T ss_dssp E-TT-SEEEE--BBS--S---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EE
T ss_pred EEecCCCEEEEeEec--cccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccc
Confidence 456789999999996 3 144679999998754311 1100 0 00123345777664433 899
Q ss_pred EEEEEEcCCccEEEEEEEEEE
Q psy2166 765 YTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 765 Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
|+|.|.+...+....++|.+.
T Consensus 100 YTCeVt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 100 YTCEVTELSREGETTIELKYR 120 (130)
T ss_dssp EEEEEEETTEEEEEEEEEEE-
T ss_pred eEEEEEecCCCceEEEEEEEE
Confidence 999999999888888888773
|
; PDB: 2VSC_B 2JJS_D 2JJT_C. |
| >PHA02914 Immunoglobulin-like domain protein; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.52 Score=47.58 Aligned_cols=167 Identities=14% Similarity=0.121 Sum_probs=99.8
Q ss_pred cCCCCceecCCCcEEEEEEEecCCCC-CceEEEEECCEecC-----------------CCCceEEEec------CcEEEE
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPKNDP-NLKIEWIFNGKPLE-----------------LGSRFKTTAD------FGFVTL 126 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~~~p-~~~v~W~k~g~~i~-----------------~~~~~~~~~~------~~~~~L 126 (805)
.+-..+.+..|..|.|.|..+.-|+. .....|+--|-++. .+..|.+..- -..++|
T Consensus 269 k~~~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STL 348 (500)
T PHA02914 269 KKFDEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTL 348 (500)
T ss_pred cccceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceE
Confidence 34446677789999999999854554 34688987664443 2234555432 246799
Q ss_pred EEcccccCCCeEEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCcee
Q psy2166 127 DLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFT 206 (805)
Q Consensus 127 ~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 206 (805)
+|.++..+.+|.|.|+|....-..++..-+.|.... +.
T Consensus 349 TIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V------------------------------------------~f 386 (500)
T PHA02914 349 TIKKAHINNAGCYEAQAFMGKFKEECRHCFKVADHV------------------------------------------FF 386 (500)
T ss_pred EeeeEEEEcCCceEEEEecCcchhhhhhheEeccEE------------------------------------------EE
Confidence 999999999999999998765455555556554321 11
Q ss_pred cccccccccCCCce-EEEEEEEeeCCCCCeEEEEEECCEEccCCCcE-------EEEEEcCeEEEEEcCCCCcc-cEEEE
Q psy2166 207 SEFQHLSNLSEGEI-AHFEASLIPVGDQTMTVEFLYNGKPIEASHRI-------RTVHAFGMVVLEILGTKIED-TGVYT 277 (805)
Q Consensus 207 ~~~~~~~~v~~g~~-~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~-------~~~~~~~~~~L~i~~~~~~d-~G~Y~ 277 (805)
.+ ..+|+. -...|-+......++.+.|.-+|........- .....-....+.|.+-...| --.-.
T Consensus 387 ~W------~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~~~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~ 460 (500)
T PHA02914 387 KW------NTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGEIADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLS 460 (500)
T ss_pred EE------EeccCceEEEEEEEEecccCCceeEEEEccEEecCeecCcccccccccccccceEEEEEecccCccccccce
Confidence 11 224333 34578764333456789999888655432111 11111124566666655555 33556
Q ss_pred EEEEcCCe
Q psy2166 278 CRATNKWG 285 (805)
Q Consensus 278 C~~~n~~g 285 (805)
|......+
T Consensus 461 Cr~~tg~~ 468 (500)
T PHA02914 461 CINITGQG 468 (500)
T ss_pred EEEecCCC
Confidence 77665444
|
|
| >PHA02982 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.042 Score=49.90 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=58.3
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCE-Ecc----------C--------CCCeEEEeeCcEEEEEEcCCCCCCCE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGK-PIE----------A--------SHRIRTVHAFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~-~l~----------~--------~~~~~~~~~~~~~~L~i~~v~~~d~G 763 (805)
....|++|.|.|... .+.-.....|+++.. -|. . .+.++++-++..++|+|.+++.+..|
T Consensus 35 ~a~vd~~V~L~C~~~-~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G 113 (251)
T PHA02982 35 NATVDQEVKLQCLFK-DADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG 113 (251)
T ss_pred hccCCCcEEEEecCC-CcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence 678899999999953 455556889998532 221 1 13345566677889999999999999
Q ss_pred EEEEEEEcCCccEEE-EEEEEE
Q psy2166 764 VYTCRATNKWGQAEI-SVNLEC 784 (805)
Q Consensus 764 ~Y~C~a~N~~G~~~~-~~~l~V 784 (805)
=|+|.|....|..+. ..-|.|
T Consensus 114 CYtc~~ks~~~k~E~c~kCl~V 135 (251)
T PHA02982 114 CFTCEAKDAEGKEETCEKCLEI 135 (251)
T ss_pred ceEEEEecCCCchheeheeeeE
Confidence 999999987764333 444444
|
|
| >KOG4597|consensus | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.061 Score=55.23 Aligned_cols=85 Identities=15% Similarity=0.131 Sum_probs=61.8
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEE---CCEec--CCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCC
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF---NGKPL--ELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLA 147 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k---~g~~i--~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 147 (805)
+....|..|++..++|-+. |.+.+.|+|.+ |++.+ .....+.--.-.....|.|-+....|+|.|+|.+++..
T Consensus 203 pa~w~vg~wetcS~tCg~~--G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~ 280 (560)
T KOG4597|consen 203 PAEWFVGDWETCSSTCGVQ--GRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGA 280 (560)
T ss_pred cchhhcccchhhccccccc--CCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecccccc
Confidence 3456788999999999998 78999999986 33322 21111100001134479999999999999999999999
Q ss_pred eeEEEEEEEEEe
Q psy2166 148 GETFTSTTIYCS 159 (805)
Q Consensus 148 g~~~~~~~l~V~ 159 (805)
|.......+.+.
T Consensus 281 g~~~rdv~c~s~ 292 (560)
T KOG4597|consen 281 GFLRRDVPCSSV 292 (560)
T ss_pred ceeeccceeeee
Confidence 988887777654
|
|
| >PHA03042 CD47-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.18 Score=48.27 Aligned_cols=72 Identities=19% Similarity=0.281 Sum_probs=50.5
Q ss_pred CCCCeEEEEEEEeecCCC------CeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEE
Q psy2166 705 SEGEIAHFEASLIPVGDQ------TMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 778 (805)
Q Consensus 705 ~~G~~~~l~C~~~~~g~p------~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~ 778 (805)
.-++++.+.|.+. ++ .-.++|.++|+.+-..+.. ..++|.+.. ..+=.|.|+|.|.+...+...
T Consensus 29 ~CN~TV~IpC~v~---n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~ 98 (286)
T PHA03042 29 TCNKTIVIVCNLN---LLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKFNF-SKNLSGNYTCEAINKFNKIKN 98 (286)
T ss_pred ecCceEEEEeecC---ChhhcCccceEEEEEeCCeeEEEecCC------cceEEEEec-cccCCCceeEEEeecccCccE
Confidence 4588999999995 44 4579999999876544332 123566643 334489999999998777777
Q ss_pred EEEEEEEE
Q psy2166 779 SVNLECVV 786 (805)
Q Consensus 779 ~~~l~V~~ 786 (805)
.++|.-.+
T Consensus 99 ~IeLk~~~ 106 (286)
T PHA03042 99 TIELQYVI 106 (286)
T ss_pred EEEEEEEE
Confidence 77766543
|
|
| >PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.057 Score=51.43 Aligned_cols=49 Identities=24% Similarity=0.230 Sum_probs=40.6
Q ss_pred CCCceEEEEEC-CEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeC
Q psy2166 95 DPNLKIEWIFN-GKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNL 146 (805)
Q Consensus 95 ~p~~~v~W~k~-g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~ 146 (805)
-.+|.+.|..+ |..+...+++.++..| .|.+.+.+.+++|.|+|..+..
T Consensus 10 ~iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 10 LIDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred cCCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEE
Confidence 45679999985 5666666688888777 7999999999999999998764
|
These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region |
| >PHA03283 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=1.2 Score=47.05 Aligned_cols=98 Identities=15% Similarity=0.143 Sum_probs=57.0
Q ss_pred EEEEEcccccCCCeEEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCC
Q psy2166 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPP 203 (805)
Q Consensus 124 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 203 (805)
..|.|.+++.+++|.|+-..++..+.......|+|..++..... .|. ............
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~--~Pp-------------------~~~pv~P~~h~a 192 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQT--PPA-------------------PLVPQVPARHHT 192 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCC--CCC-------------------CccccCCccCCc
Confidence 37999999999999999999987764444555565543221111 110 000111111234
Q ss_pred ceecccccccccCCCceEEEEEEEeeCC-CC--CeEEEEEEC
Q psy2166 204 QFTSEFQHLSNLSEGEIAHFEASLIPVG-DQ--TMTVEFLYN 242 (805)
Q Consensus 204 ~~~~~~~~~~~v~~g~~~~l~C~~~~~~-~p--~~~i~W~k~ 242 (805)
.|....-.......|+++.+.......- .+ ...|.||.-
T Consensus 193 ~f~v~nYhS~vf~~GDtf~lsi~l~s~~~d~~fs~~i~Wyy~ 234 (542)
T PHA03283 193 DFHVRGYHSRVYSPGDSFDLSVHLESDIGDPSFSATIDWYYM 234 (542)
T ss_pred eEEEecceeEEecCCCceeEeEEEeeccCCCCceEEEEEEEe
Confidence 4554443344577999998877664332 22 368999863
|
|
| >PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.091 Score=50.12 Aligned_cols=49 Identities=22% Similarity=0.233 Sum_probs=39.9
Q ss_pred CCeEEEEEE-CCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy2166 722 QTMTVEFLY-NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKW 773 (805)
Q Consensus 722 p~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 773 (805)
..|.+.|.. +|+.+....++.++..| .|.+.+....++|.|+|..+-..
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG---~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETG---KLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCc---eEEeeccccccCCceEEEEEEEe
Confidence 467999997 57778777777766655 49999999999999999987554
|
These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region |
| >PHA02914 Immunoglobulin-like domain protein; Provisional | Back alignment and domain information |
|---|
Probab=93.77 E-value=9 Score=39.15 Aligned_cols=74 Identities=16% Similarity=0.266 Sum_probs=48.8
Q ss_pred CcccccCCCeEEEEEEEeecCCC-CcEEEEEECCEEccC-----------------CCceEEEE------eCcEEEEEEc
Q psy2166 312 SLEGLKDGDSAHFECTLTPVNDP-ELKVEWFHNGKPIFH-----------------KNRVKMVS------DFGFVVMDIA 367 (805)
Q Consensus 312 ~~~~~~~g~~~~l~C~~~~~~~p-~~~v~W~~~g~~l~~-----------------~~~~~~~~------~~~~~~l~i~ 367 (805)
+..++..|..+.|.|..+--|+. .....|+--|-++.+ ...+.+.. +-.+++|+|.
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 34446679999999998632333 356899875544421 11222221 1234579999
Q ss_pred ccCcCCceEEEEEEEeCc
Q psy2166 368 YVQSHDSGEYVCRAWNKY 385 (805)
Q Consensus 368 ~v~~~d~G~Y~C~a~n~~ 385 (805)
++..+..|-|.|+|....
T Consensus 352 ka~I~N~GCY~~~a~~g~ 369 (500)
T PHA02914 352 KAHINNAGCYEAQAFMGK 369 (500)
T ss_pred eEEEEcCCceEEEEecCc
Confidence 999999999999997543
|
|
| >PHA03283 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=93.32 E-value=2.6 Score=44.69 Aligned_cols=97 Identities=15% Similarity=0.132 Sum_probs=62.5
Q ss_pred EEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCC
Q psy2166 627 VILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 706 (805)
Q Consensus 627 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~ 706 (805)
..|+|.+++.+++|.|+-...|..+.....+-|.|..++...- +.+....+..+......|....-......+
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~-------~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~ 206 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQ-------TPPAPLVPQVPARHHTDFHVRGYHSRVYSP 206 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCC-------CCCCCccccCCccCCceEEEecceeEEecC
Confidence 4599999999999999999999887556666777765332110 011112333334455666665433327799
Q ss_pred CCeEEEEEEEeecC-CC--CeEEEEEE
Q psy2166 707 GEIAHFEASLIPVG-DQ--TMTVEFLY 730 (805)
Q Consensus 707 G~~~~l~C~~~~~g-~p--~~~v~W~~ 730 (805)
|+++.++-.....- .+ ...|.|++
T Consensus 207 GDtf~lsi~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 207 GDSFDLSVHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred CCceeEeEEEeeccCCCCceEEEEEEE
Confidence 99999988876111 12 25799987
|
|
| >PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.58 Score=38.04 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=29.8
Q ss_pred CceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEE
Q psy2166 113 SRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFT 152 (805)
Q Consensus 113 ~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~ 152 (805)
.|+....++. +|.|+.++..|+|.|...+++..|....
T Consensus 62 ~r~~F~~enl--aLlIkaAq~qDSG~Y~LEvT~~sG~V~~ 99 (108)
T PF11465_consen 62 NRFNFTSENL--ALLIKAAQPQDSGLYCLEVTNESGKVCT 99 (108)
T ss_dssp HHEEEETTTT--EEEESS-SGGG-EEEEEEEEETTSCEEE
T ss_pred ceEeeeccCc--eEEEeecCcccCceEEEEEEcCCCcEEE
Confidence 3666666655 8999999999999999999999888743
|
It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A. |
| >PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.32 Score=39.48 Aligned_cols=62 Identities=18% Similarity=0.294 Sum_probs=39.9
Q ss_pred CCCCeE--EEEEECCEEccC---CCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 720 GDQTMT--VEFLYNGKPIEA---SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 720 g~p~~~--v~W~~~g~~l~~---~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
..+... ++|..+...... ++++.+...+. .|.|..++..|+|.|.-+++|..|.. .+....|
T Consensus 38 s~~~~~~IltW~n~~~~~~~~~~n~r~~F~~enl--aLlIkaAq~qDSG~Y~LEvT~~sG~V-~~~~FqV 104 (108)
T PF11465_consen 38 SQKKFEVILTWKNDSTPSYNSSFNNRFNFTSENL--ALLIKAAQPQDSGLYCLEVTNESGKV-CTKNFQV 104 (108)
T ss_dssp SSSEEE-EEEEETTEEEESSTTHHHHEEEETTTT--EEEESS-SGGG-EEEEEEEEETTSCE-EEEEEEE
T ss_pred cCCceEEEEEEcCCCcccccccccceEeeeccCc--eEEEeecCcccCceEEEEEEcCCCcE-EEEEEEE
Confidence 555554 455544443322 24555555444 89999999999999999999999976 4444444
|
It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A. |
| >PHA03042 CD47-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.55 Score=45.11 Aligned_cols=73 Identities=18% Similarity=0.309 Sum_probs=47.5
Q ss_pred cCCCeEEEEEEEeeC---CCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEE
Q psy2166 509 KEGQSAHFEARLTPV---TDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 585 (805)
Q Consensus 509 ~~G~~v~L~C~v~~~---g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 585 (805)
.-.+++.+.|.+... ..-...+.|..||+.+-..... ..+.|.+.. ...=.|+|+|+|.+...+......
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t------n~aSL~~~f-~~~l~GNYTCEv~~l~n~gk~~Ie 101 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT------NTSSLKFNF-SKNLSGNYTCEAINKFNKIKNTIE 101 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC------cceEEEEec-cccCCCceeEEEeecccCccEEEE
Confidence 457899999999721 1135679999999887432211 123466653 334489999999976665555555
Q ss_pred EEE
Q psy2166 586 LKC 588 (805)
Q Consensus 586 l~V 588 (805)
|.-
T Consensus 102 Lk~ 104 (286)
T PHA03042 102 LQY 104 (286)
T ss_pred EEE
Confidence 543
|
|
| >PHA02865 MHC-like TNF binding protein; Provisional | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.66 Score=46.84 Aligned_cols=37 Identities=5% Similarity=0.028 Sum_probs=25.1
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEEC
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 731 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~ 731 (805)
.||.....-... .+ .++|.|.|.++-.+...+.|.||
T Consensus 202 vpP~V~Vt~k~~----~~-~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 202 VTPTVKVTGEEL----GD-NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CCCceEEecccC----CC-CceEEEEEEeEeCCccEEEEEec
Confidence 566655532211 12 58999999965556678999999
|
|
| >PHA02865 MHC-like TNF binding protein; Provisional | Back alignment and domain information |
|---|
Probab=91.60 E-value=0.78 Score=46.32 Aligned_cols=39 Identities=8% Similarity=0.215 Sum_probs=28.9
Q ss_pred CCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEEC
Q psy2166 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYN 535 (805)
Q Consensus 492 ~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~ 535 (805)
...+|.+.+.-.. . .+ .++|+|.|.++-+..+.++|.||
T Consensus 200 R~vpP~V~Vt~k~---~-~~-~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 200 KPVTPTVKVTGEE---L-GD-NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CCCCCceEEeccc---C-CC-CceEEEEEEeEeCCccEEEEEec
Confidence 3567777664331 1 22 68999999988788899999999
|
|
| >PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) [] | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.99 Score=36.15 Aligned_cols=68 Identities=13% Similarity=0.320 Sum_probs=46.6
Q ss_pred CceecCCCcEEEEEEEecC---CCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPK---NDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAW 144 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~---~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 144 (805)
...|..|.+++..|.+... ......|.|..|+..++ +++|....+. .++++|.+.....+-.|-|...
T Consensus 12 ~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP-~~qy~~in~~-~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 12 SPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIP-GSQYRVINDT-VSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp SSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCEST-CGCEEEESTT-EEEEEESS--SSEEEEEEEEEC
T ss_pred CCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECC-hhHcceeCCe-EEEEEEccCCCCCceEEEEEEc
Confidence 4478999999999999843 13667899999999554 5567666554 4688888877766667777643
|
The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B. |
| >PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=91.25 E-value=1.8 Score=33.88 Aligned_cols=52 Identities=17% Similarity=0.102 Sum_probs=34.7
Q ss_pred CceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEE-EeCCeeEEEEEEEEE
Q psy2166 97 NLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRA-WNLAGETFTSTTIYC 158 (805)
Q Consensus 97 ~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-~n~~g~~~~~~~l~V 158 (805)
.+.+.|+-.+..+....+ .+.......+|+|.+.|.| .+..........|.|
T Consensus 26 ~~~~~l~~~~~k~~~~~~----------~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 26 KPSLFLENPGKKSLETKK----------LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp CEEEEEECSSCEEEEESS----------EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred ChhheeeccCccccccce----------EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 567777766654432222 4556677889999999999 666656666666655
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G .... |
| >PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) [] | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.81 Score=36.65 Aligned_cols=64 Identities=17% Similarity=0.353 Sum_probs=44.5
Q ss_pred ccCCCeEEEEEEEeeCC---CCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEE
Q psy2166 508 LKEGQSAHFEARLTPVT---DPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRA 573 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g---~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 573 (805)
+..|.+++..|.+...- .....+.|..|+..++.+ ++....+ +.+.+++.+.....+-.|-|..
T Consensus 15 v~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~-qy~~in~-~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 15 VSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGS-QYRVIND-TVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp EETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCG-CEEEEST-TEEEEEESS--SSEEEEEEEEE
T ss_pred EeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChh-HcceeCC-eEEEEEEccCCCCCceEEEEEE
Confidence 78999999999998432 256789999999966554 5654444 4478999887777777888874
|
The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B. |
| >PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites [] | Back alignment and domain information |
|---|
Probab=90.43 E-value=16 Score=34.46 Aligned_cols=75 Identities=15% Similarity=0.198 Sum_probs=39.8
Q ss_pred CCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEee--CCEEEEEEccCCC--CCC
Q psy2166 491 PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD--FGIVILDILYCYE--ENS 566 (805)
Q Consensus 491 ~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~--~~~~~L~i~~v~~--~d~ 566 (805)
.+..+|.+.+.+. .| ...|.+.-.+.....+.|.-++.............. +.-....|.+... +..
T Consensus 78 ~Vy~~P~vsv~F~------~g---~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~ 148 (211)
T PF02124_consen 78 SVYPKPRVSVRFE------DG---YAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDED 148 (211)
T ss_pred ceecCCEEEEEec------CC---EEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccC
Confidence 3456777776532 33 345888755555579999988876532222221110 1111233333322 234
Q ss_pred E--EEEEEEE
Q psy2166 567 G--VYECRAT 574 (805)
Q Consensus 567 G--~Y~C~a~ 574 (805)
| .|+|.+.
T Consensus 149 ~~~~YtC~l~ 158 (211)
T PF02124_consen 149 GPVEYTCRLI 158 (211)
T ss_pred CceeEEEEEe
Confidence 5 9999985
|
EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection. |
| >PHA03282 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=90.32 E-value=13 Score=38.98 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcccEEEEEEEEc
Q psy2166 260 MVVLEILGTKIEDTGVYTCRATN 282 (805)
Q Consensus 260 ~~~L~i~~~~~~d~G~Y~C~~~n 282 (805)
...|.|.++..+++|.|.|++.-
T Consensus 332 ~VdL~F~nAp~saSGLYVfVl~y 354 (540)
T PHA03282 332 TVNLQLRDASEASGGLYVCVVYV 354 (540)
T ss_pred ccceEecCCCcccCceEEEEEEE
Confidence 35899999999999999999873
|
|
| >PHA03286 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=90.30 E-value=11 Score=39.37 Aligned_cols=94 Identities=14% Similarity=0.183 Sum_probs=55.4
Q ss_pred EEEEeccCCCCCcEEEEEEEEeCCcceEE-EEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeec-CCccccc
Q psy2166 627 VILDILYCYEENSGVYECRATNKYGSDVT-KASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSE-FQHLSNL 704 (805)
Q Consensus 627 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~-~~~~~~v 704 (805)
..|+|.+++.+++|.|+-...|..|.... .+-|.|.++-.- ..|.. ..+..+......|... ..+. ..
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~----r~p~~-----~~pv~p~~~~~~f~l~ny~S~-lF 196 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRA----RDPTM-----NIPITPPSTRVDLSLKNFKAF-LY 196 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCC----CCCCc-----ccCCCCcccceEEEEecccce-Ee
Confidence 34999999999999999999988776554 445566432100 00000 0000111122345543 3444 78
Q ss_pred CCCCeEEEEEEEeecCC---CCeEEEEEE
Q psy2166 705 SEGEIAHFEASLIPVGD---QTMTVEFLY 730 (805)
Q Consensus 705 ~~G~~~~l~C~~~~~g~---p~~~v~W~~ 730 (805)
.+|+++.++-.....-. =...|.|++
T Consensus 197 ~~GDTF~vSv~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 197 NVGDTVDASVTAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred cCCCeEEEEEEEeecccCCCceEEEEEEE
Confidence 99999988877652111 225899987
|
|
| >PHA03286 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=90.21 E-value=17 Score=37.93 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=28.6
Q ss_pred EEEEEcccccCCCeEEEEEEEeCCeeEEE-EEEEEEec
Q psy2166 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFT-STTIYCST 160 (805)
Q Consensus 124 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l~V~~ 160 (805)
..|.|.+++.+++|.|+-..+|+.|.... ..-|+|..
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~ 164 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSG 164 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEec
Confidence 37999999999999999999987665444 34456643
|
|
| >PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs) | Back alignment and domain information |
|---|
Probab=88.96 E-value=6.2 Score=31.69 Aligned_cols=75 Identities=19% Similarity=0.188 Sum_probs=46.2
Q ss_pred CCCeeeecCCccc-ccCCC--CeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEE
Q psy2166 690 RPPQFTSEFQHLS-NLSEG--EIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYT 766 (805)
Q Consensus 690 ~~P~~~~~~~~~~-~v~~G--~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 766 (805)
.+|+|..+....+ .+..+ +...|.+.+. +. ...+.|+-||+.+...... . .+.+. ....|.|+
T Consensus 9 ~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~--~~-~~~~~W~vdg~~~g~~~~~------~--~~~~~---~~~~G~h~ 74 (89)
T PF06832_consen 9 SPLRITSPPDGAVLALDPGIPERQPLVLKAA--GG-RGPVYWFVDGEPLGTTQPG------H--QLFWQ---PDRPGEHT 74 (89)
T ss_pred CCCEEEecCCCCEEEeCCCCCccceEEEEEe--CC-CCcEEEEECCEEcccCCCC------C--eEEeC---CCCCeeEE
Confidence 5667776655541 22222 2555566665 44 4499999999999433221 1 23332 25789999
Q ss_pred EEEEcCCccEEE
Q psy2166 767 CRATNKWGQAEI 778 (805)
Q Consensus 767 C~a~N~~G~~~~ 778 (805)
..+....|....
T Consensus 75 l~vvD~~G~~~~ 86 (89)
T PF06832_consen 75 LTVVDAQGRSAS 86 (89)
T ss_pred EEEEcCCCCEEE
Confidence 999999997665
|
A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold. |
| >PHA03282 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=88.76 E-value=11 Score=39.58 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCCCCEEEEEEEE
Q psy2166 749 MVVLEILGTKIEDTGVYTCRAT 770 (805)
Q Consensus 749 ~~~L~i~~v~~~d~G~Y~C~a~ 770 (805)
...|++.|+..+++|.|-|++.
T Consensus 332 ~VdL~F~nAp~saSGLYVfVl~ 353 (540)
T PHA03282 332 TVNLQLRDASEASGGLYVCVVY 353 (540)
T ss_pred ccceEecCCCcccCceEEEEEE
Confidence 3479999999999999999985
|
|
| >PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites [] | Back alignment and domain information |
|---|
Probab=88.61 E-value=22 Score=33.55 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=31.8
Q ss_pred CceEEEEECCEecCCCC---ceEEEecC---cEEEEEE-cccccCCCeEEEEEEEeCC
Q psy2166 97 NLKIEWIFNGKPLELGS---RFKTTADF---GFVTLDL-TEVYDRDQGIYTCRAWNLA 147 (805)
Q Consensus 97 ~~~v~W~k~g~~i~~~~---~~~~~~~~---~~~~L~I-~~~~~~D~G~Y~C~a~n~~ 147 (805)
...+.|+.||..+.... +.....+| ..++|.+ .+...+-.-..+|.+.-..
T Consensus 6 S~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r 63 (211)
T PF02124_consen 6 SVRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYR 63 (211)
T ss_pred cEEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEcc
Confidence 45789999999887542 23344444 2446666 3334444568999986543
|
EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection. |
| >PHA03052 Hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=88.44 E-value=1.8 Score=31.72 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=29.8
Q ss_pred CCceecCCCcEEEEEEEe-cCCCCCceEEEEECCEecC
Q psy2166 74 PEFKLGEAQPLHLEAQVE-PKNDPNLKIEWIFNGKPLE 110 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~-~~~~p~~~v~W~k~g~~i~ 110 (805)
..+.+..|.+++|.|.+. +.+...+.|.|.-|+..+.
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 356788999999999998 2245577899999998883
|
|
| >PHA03281 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=88.26 E-value=13 Score=39.71 Aligned_cols=92 Identities=15% Similarity=0.158 Sum_probs=57.4
Q ss_pred EEEeccCCCCCcEEEEEEEEeCCcceEE-EEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCC
Q psy2166 628 ILDILYCYEENSGVYECRATNKYGSDVT-KASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 706 (805)
Q Consensus 628 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~ 706 (805)
.|+|.+++..++|.|+--.....|.... .+-|.|..++... +|. +. ..++....+|....-......+
T Consensus 299 vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~r----ip~-----p~--Vtpk~hga~F~vknYhShVF~p 367 (642)
T PHA03281 299 VLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENH----IDL-----PA--VTPKPKGAEFHMWHYHSHVFSV 367 (642)
T ss_pred eeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccC----CCC-----CC--ccccccCceEEEeccceeEecC
Confidence 4999999999999999888866665444 5556665433111 111 11 1223344556664433326799
Q ss_pred CCeEEEEEEEeecCCC---CeEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQ---TMTVEFLY 730 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p---~~~v~W~~ 730 (805)
|+++.+.......... ...|.|++
T Consensus 368 GDTFsl~v~L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 368 GDTFSLAMHLQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred CCeeEEEEEEeeeccCCCceeEEEEEE
Confidence 9999999988622112 25799987
|
|
| >PHA03052 Hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.71 E-value=2.2 Score=31.27 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=29.7
Q ss_pred CcccccCCCeEEEEEEEe-eCCCCCcEEEEEECCEEcc
Q psy2166 504 DVTQLKEGQSAHFEARLT-PVTDPDLVVEWFYNGKKLP 540 (805)
Q Consensus 504 ~~~~v~~G~~v~L~C~v~-~~g~p~~~v~W~~~g~~l~ 540 (805)
....+..|..++|.|.|. +.|...+.+.|.-|++.+.
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 444578899999999997 3345578999999999883
|
|
| >PHA03281 envelope glycoprotein E; Provisional | Back alignment and domain information |
|---|
Probab=86.99 E-value=15 Score=39.36 Aligned_cols=92 Identities=16% Similarity=0.226 Sum_probs=53.5
Q ss_pred EEEEcccccCCCeEEEEEEEeCCeeEEE-EEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCC
Q psy2166 125 TLDLTEVYDRDQGIYTCRAWNLAGETFT-STTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPP 203 (805)
Q Consensus 125 ~L~I~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 203 (805)
.|.|.+++..++|.|+-..+...|.... ..-|+|..++. .+...|. ........
T Consensus 299 vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~--~rip~p~-----------------------Vtpk~hga 353 (642)
T PHA03281 299 VLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEE--NHIDLPA-----------------------VTPKPKGA 353 (642)
T ss_pred eeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcc--cCCCCCC-----------------------ccccccCc
Confidence 6899999999999999988866564433 34455543221 1111110 00111223
Q ss_pred ceecccccccccCCCceEEEEEEEeeC---CCCCeEEEEEE
Q psy2166 204 QFTSEFQHLSNLSEGEIAHFEASLIPV---GDQTMTVEFLY 241 (805)
Q Consensus 204 ~~~~~~~~~~~v~~g~~~~l~C~~~~~---~~p~~~i~W~k 241 (805)
.|....-.......|+++.+....... +.=...|.||.
T Consensus 354 ~F~vknYhShVF~pGDTFsl~v~L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 354 EFHMWHYHSHVFSVGDTFSLAMHLQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred eEEEeccceeEecCCCeeEEEEEEeeeccCCCceeEEEEEE
Confidence 455444333347799999888877533 11236899986
|
|
| >PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein | Back alignment and domain information |
|---|
Probab=86.96 E-value=0.59 Score=50.03 Aligned_cols=95 Identities=19% Similarity=0.282 Sum_probs=17.8
Q ss_pred EEEEcccccCCCeEEEEEEEeCCeeEEE-EEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCC
Q psy2166 125 TLDLTEVYDRDQGIYTCRAWNLAGETFT-STTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPP 203 (805)
Q Consensus 125 ~L~I~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 203 (805)
.|.|.+++.+|+|.|+-..++..+.... ...|.|..+.... ....|. .+........
T Consensus 90 ~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~-~~p~p~---------------------~p~~p~~~~~ 147 (439)
T PF02480_consen 90 GLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDP-RTPPPH---------------------HPIVPHRHGA 147 (439)
T ss_dssp ------------------------------------------------------------------------------SE
T ss_pred ceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCC-CCCCCC---------------------CCCCCccccc
Confidence 6999999999999999999876554432 3444444332110 000110 0000011223
Q ss_pred ceecccccccccCCCceEEEEEEEeeCCCC----CeEEEEEE
Q psy2166 204 QFTSEFQHLSNLSEGEIAHFEASLIPVGDQ----TMTVEFLY 241 (805)
Q Consensus 204 ~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p----~~~i~W~k 241 (805)
.|............|+++.+...+...... ...|.||.
T Consensus 148 ~~~~~~~~s~vf~~Gdtf~~~v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 148 TFHLKNYHSHVFSPGDTFHLSVHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp EEEEE--SEEE--TT--EE---EEEEEESSS--EEEEEEEEE
T ss_pred EEEEeccceEEecCCCcEEEeEEEEeccCCCCCeeEEEEEEE
Confidence 344444444457899999888776533222 26899987
|
gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B. |
| >PHA03189 UL14 tegument protein; Provisional | Back alignment and domain information |
|---|
Probab=86.38 E-value=6.2 Score=38.67 Aligned_cols=86 Identities=14% Similarity=0.126 Sum_probs=48.6
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEE-----EE----------ECCEecCCCC-------ceEEEecC--cEEEEEE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIE-----WI----------FNGKPLELGS-------RFKTTADF--GFVTLDL 128 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~-----W~----------k~g~~i~~~~-------~~~~~~~~--~~~~L~I 128 (805)
+..+-+..|+.+++.|.+....=|..+|. |- .+|+.+..+. ++++..-+ ...+|++
T Consensus 59 pAP~l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF 138 (348)
T PHA03189 59 PAPLLVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF 138 (348)
T ss_pred CCccccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE
Confidence 33456789999999999985433333332 21 1234443332 23332222 3446665
Q ss_pred cccccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy2166 129 TEVYDRDQGIYTCRAWNLAGETFTSTTIYCS 159 (805)
Q Consensus 129 ~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 159 (805)
++..+-+|.|.|+..|..-......++.|.
T Consensus 139 -~v~t~taG~Y~CvLrN~tHglv~~rf~ivt 168 (348)
T PHA03189 139 -RVSTSTAGMYECVLRNETHGLVLQRFVIVT 168 (348)
T ss_pred -EEEecccceEEEEeccccceeeeEEeeeee
Confidence 455677999999999975444444444443
|
|
| >PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds | Back alignment and domain information |
|---|
Probab=85.79 E-value=7.2 Score=30.51 Aligned_cols=51 Identities=18% Similarity=0.259 Sum_probs=31.9
Q ss_pred eEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE-EcCCccEEEEEEEEE
Q psy2166 724 MTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA-TNKWGQAEISVNLEC 784 (805)
Q Consensus 724 ~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a-~N~~G~~~~~~~l~V 784 (805)
+.+.|+-.+..+... .. .+.....+.+|+|...|.| .|..-.-.....|.|
T Consensus 27 ~~~~l~~~~~k~~~~--------~~--~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 27 PSLFLENPGKKSLET--------KK--LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEEEECSSCEEEEE--------SS--EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred hhheeeccCcccccc--------ce--EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 567777655433222 12 3555677889999999999 665545555555544
|
There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G .... |
| >PHA03189 UL14 tegument protein; Provisional | Back alignment and domain information |
|---|
Probab=84.37 E-value=7.4 Score=38.17 Aligned_cols=78 Identities=13% Similarity=0.219 Sum_probs=46.3
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEE---------------CCEEccCCCCeEE------EeeCc---EEEEEEcCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLY---------------NGKPIEASHRIRT------VHAFG---MVVLEILGTK 758 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~---------------~g~~l~~~~~~~~------~~~~~---~~~L~i~~v~ 758 (805)
-+..|+.+++.|.+-.-..|...|+=.+ +|..+.+....++ ..+.+ .++|++ ++.
T Consensus 63 l~pyGdrvtVpC~fp~H~WPevsIrarfCys~e~s~eLv~da~~G~~l~ndl~~~L~~~~W~Fedlg~aq~ltLtF-~v~ 141 (348)
T PHA03189 63 LVPYGDRVTVPCTFPTHDWPEVSIRARFCYSPERSRELVVDADSGGELHNDLTYRLPEASWKFEDLGAAQRLTLTF-RVS 141 (348)
T ss_pred ccCCCceeeeeeeecCCCCceeeEEEEEeeccccceEEEEEcccCCEeccccceecccceeeeecccceeEEEEEE-EEE
Confidence 6789999999999974345776654322 2333333222111 11222 244555 467
Q ss_pred CCCCEEEEEEEEcCC-ccEEEEEE
Q psy2166 759 IEDTGVYTCRATNKW-GQAEISVN 781 (805)
Q Consensus 759 ~~d~G~Y~C~a~N~~-G~~~~~~~ 781 (805)
.+-+|.|.|+..|.. |-...++.
T Consensus 142 t~taG~Y~CvLrN~tHglv~~rf~ 165 (348)
T PHA03189 142 TSTAGMYECVLRNETHGLVLQRFV 165 (348)
T ss_pred ecccceEEEEeccccceeeeEEee
Confidence 788999999999974 44444433
|
|
| >PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein | Back alignment and domain information |
|---|
Probab=83.88 E-value=1.8 Score=46.36 Aligned_cols=94 Identities=20% Similarity=0.291 Sum_probs=19.0
Q ss_pred EEEeccCCCCCcEEEEEEEEeCCcceEEE-EEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeec-CCcccccC
Q psy2166 628 ILDILYCYEENSGVYECRATNKYGSDVTK-ASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSE-FQHLSNLS 705 (805)
Q Consensus 628 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~-~~~~~~v~ 705 (805)
.|.|.+++.+|+|.|+-...+..|..... +.|.|..+... +....+..+..+......|... +... ...
T Consensus 90 ~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~--------~~~p~p~~p~~p~~~~~~~~~~~~~s~-vf~ 160 (439)
T PF02480_consen 90 GLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPD--------PRTPPPHHPIVPHRHGATFHLKNYHSH-VFS 160 (439)
T ss_dssp ----------------------------------------------------------------SEEEEEE--SEE-E--
T ss_pred ceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcC--------CCCCCCCCCCCCcccccEEEEeccceE-Eec
Confidence 39999999999999999998776655543 44555442211 0011111122222334455543 3444 789
Q ss_pred CCCeEEEEEEEeecCCC-C---eEEEEEE
Q psy2166 706 EGEIAHFEASLIPVGDQ-T---MTVEFLY 730 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p-~---~~v~W~~ 730 (805)
+|+++.+.-.+...... . ..|.|++
T Consensus 161 ~Gdtf~~~v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 161 PGDTFHLSVHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp TT--EE---EEEEEESSS--EEEEEEEEE
T ss_pred CCCcEEEeEEEEeccCCCCCeeEEEEEEE
Confidence 99999999888633333 1 4799987
|
gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B. |
| >KOG1026|consensus | Back alignment and domain information |
|---|
Probab=82.46 E-value=1.4 Score=49.78 Aligned_cols=147 Identities=16% Similarity=0.092 Sum_probs=93.9
Q ss_pred cccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEE
Q psy2166 507 QLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 586 (805)
.+..|..+++.|.+. +.|.|...|+.++............-. .. ...+.+ +.|.+.|..|.....+.+
T Consensus 203 ~v~~~~~~~~~c~~~--~~~vp~~~~~~~~~~~~~~~~~~~~c~-~~-~~~~~~--------~~c~~E~~~~~~~~~v~~ 270 (774)
T KOG1026|consen 203 TVEEGSSITLKCSQA--GIPVPCHYWFPNCLASSNTNQTSSLCR-SE-CEVLEN--------DLCIAENAVARSNPSILL 270 (774)
T ss_pred hhcccchheeeeecc--cCCCcceeeecccccccCCCccccccc-cc-ceeeec--------hhhHHHHhhhhcCceeee
Confidence 378899999999999 789999999987765544221111000 10 112221 899999999998877777
Q ss_pred EEeeeeee-----------------eecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeC
Q psy2166 587 KCVSKTNL-----------------ILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNK 649 (805)
Q Consensus 587 ~V~~~~~~-----------------~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~ 649 (805)
.+..+... +...+.|...|..+|..+...+.......+...-+......-.+.|.|+|.+.|.
T Consensus 271 ~~~~p~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~~~~~e~~ 350 (774)
T KOG1026|consen 271 VVDLPKAEVLLCSPLSDHHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKEQCLPWNDPPHSHNGNYTLFPELP 350 (774)
T ss_pred EEecccccccCCCCccccCceeeeeccCCCCCceeeeecCccceEecccccccccCcCCcccCcCcccccCcceeeeccc
Confidence 66554221 1224567889999887654322221111110012334444677889999999999
Q ss_pred CcceEEEEEEEEeecc
Q psy2166 650 YGSDVTKASLKCVSKT 665 (805)
Q Consensus 650 ~g~~~~~~~l~V~~~p 665 (805)
.|.........+...|
T Consensus 351 ~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 351 GGKNYCRNPGGFMSRP 366 (774)
T ss_pred CccccccCcCccccCC
Confidence 9999888777777665
|
|
| >PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily | Back alignment and domain information |
|---|
Probab=81.51 E-value=6.9 Score=31.37 Aligned_cols=78 Identities=13% Similarity=0.083 Sum_probs=47.0
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTST 154 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~ 154 (805)
...|..|+++.++|+.+.. .|. .+-|.-.=. +..+....+=..+.+.+++. | ..-.|.+.-...+...++
T Consensus 12 ~~vV~~G~Sv~VNCStsC~-~p~-~~GLET~L~------k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~~~~~ 81 (91)
T PF03921_consen 12 EPVVPPGGSVWVNCSTSCP-QPE-KIGLETSLS------KTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQSSASA 81 (91)
T ss_dssp EEEEETTEEEEEEEEESSS-S-S-EEEEESSSE------EEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEEEEEE
T ss_pred ccEECCCCCEEEEEcCCCC-CCC-cceEEEecC------CcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEEEeEE
Confidence 6789999999999998753 332 344532110 11111112233566778875 4 577899987655667788
Q ss_pred EEEEeccc
Q psy2166 155 TIYCSTKE 162 (805)
Q Consensus 155 ~l~V~~~~ 162 (805)
.|+|+..|
T Consensus 82 ~ItVY~~P 89 (91)
T PF03921_consen 82 NITVYKPP 89 (91)
T ss_dssp EEEEEB--
T ss_pred eeEEeCCC
Confidence 88887654
|
They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 805 | ||||
| 3b43_A | 570 | I-band Fragment I65-i70 From Titin Length = 570 | 2e-15 | ||
| 3b43_A | 570 | I-band Fragment I65-i70 From Titin Length = 570 | 1e-12 | ||
| 3b43_A | 570 | I-band Fragment I65-i70 From Titin Length = 570 | 2e-09 | ||
| 2rik_A | 284 | I-Band Fragment I67-I69 From Titin Length = 284 | 2e-14 | ||
| 2rik_A | 284 | I-Band Fragment I67-I69 From Titin Length = 284 | 3e-05 | ||
| 2rik_A | 284 | I-Band Fragment I67-I69 From Titin Length = 284 | 3e-04 | ||
| 2rjm_A | 284 | 3ig Structure Of Titin Domains I67-I69 E-To-A Mutat | 3e-14 | ||
| 2rjm_A | 284 | 3ig Structure Of Titin Domains I67-I69 E-To-A Mutat | 3e-05 | ||
| 2rjm_A | 284 | 3ig Structure Of Titin Domains I67-I69 E-To-A Mutat | 3e-04 | ||
| 1ya5_A | 201 | Crystal Structure Of The Titin Domains Z1z2 In Comp | 4e-07 | ||
| 1ya5_A | 201 | Crystal Structure Of The Titin Domains Z1z2 In Comp | 9e-06 | ||
| 1ya5_A | 201 | Crystal Structure Of The Titin Domains Z1z2 In Comp | 3e-05 | ||
| 2a38_A | 194 | Crystal Structure Of The N-Terminus Of Titin Length | 6e-07 | ||
| 2a38_A | 194 | Crystal Structure Of The N-Terminus Of Titin Length | 1e-05 | ||
| 2a38_A | 194 | Crystal Structure Of The N-Terminus Of Titin Length | 3e-05 | ||
| 3dmk_A | 816 | Crystal Structure Of Down Syndrome Cell Adhesion Mo | 2e-06 | ||
| 1bih_A | 395 | Crystal Structure Of The Insect Immune Protein Hemo | 2e-06 | ||
| 2om5_A | 381 | N-Terminal Fragment Of Human Tax1 Length = 381 | 2e-06 | ||
| 2om5_A | 381 | N-Terminal Fragment Of Human Tax1 Length = 381 | 1e-04 | ||
| 3jxa_A | 383 | Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = | 4e-06 | ||
| 3kld_A | 384 | Ptprg Cntn4 Complex Length = 384 | 5e-06 | ||
| 2iep_A | 192 | Crystal Structure Of Immunoglobulin-Like Domains 1 | 1e-05 | ||
| 2wim_A | 291 | Crystal Structure Of Ncam2 Ig1-3 Length = 291 | 2e-05 | ||
| 1evt_C | 225 | Crystal Structure Of Fgf1 In Complex With The Extra | 2e-05 | ||
| 2v5t_A | 189 | Crystal Structure Of Ncam2 Ig2-3 Length = 189 | 2e-05 | ||
| 2v9q_A | 212 | First And Second Ig Domains From Human Robo1 Length | 2e-05 | ||
| 3ojv_C | 226 | Crystal Structure Of Fgf1 Complexed With The Ectodo | 2e-05 | ||
| 1cvs_C | 225 | Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L | 2e-05 | ||
| 3ojm_B | 231 | Crystal Structure Of Fgf1 Complexed With The Ectodo | 3e-05 | ||
| 1iil_E | 220 | Crystal Structure Of Pro253arg Apert Mutant Fgf Rec | 3e-05 | ||
| 1ev2_E | 220 | Crystal Structure Of Fgf2 In Complex With The Extra | 7e-05 | ||
| 2vra_A | 208 | Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20 | 9e-05 | ||
| 2vr9_A | 217 | Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21 | 9e-05 | ||
| 3grw_A | 241 | Fgfr3 In Complex With A Fab Length = 241 | 9e-05 | ||
| 1e0o_B | 219 | Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C | 1e-04 | ||
| 2fdb_P | 220 | Crystal Structure Of Fibroblast Growth Factor (Fgf) | 1e-04 | ||
| 1ry7_B | 334 | Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com | 1e-04 | ||
| 2xy1_A | 192 | Crystal Structure Of Ncam2 Ig3-4 Length = 192 | 2e-04 | ||
| 1ii4_E | 220 | Crystal Structure Of Ser252trp Apert Mutant Fgf Rec | 3e-04 | ||
| 3oj2_C | 231 | Crystal Structure Of Fgf1 Complexed With The Ectodo | 3e-04 | ||
| 2yd5_A | 214 | Crystal Structure Of The N-Terminal Ig1-2 Module Of | 5e-04 | ||
| 3lcy_A | 197 | Titin Ig Tandem Domains A164-A165 Length = 197 | 7e-04 | ||
| 2dm3_A | 110 | Solution Structure Of The Second Ig Domain Of Human | 8e-04 | ||
| 3qp3_A | 103 | Crystal Structure Of Titin Domain M4, Tetragonal Fo | 9e-04 |
| >pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570 | Back alignment and structure |
|
| >pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570 | Back alignment and structure |
|
| >pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570 | Back alignment and structure |
|
| >pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284 | Back alignment and structure |
|
| >pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284 | Back alignment and structure |
|
| >pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284 | Back alignment and structure |
|
| >pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284 | Back alignment and structure |
|
| >pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284 | Back alignment and structure |
|
| >pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284 | Back alignment and structure |
|
| >pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201 | Back alignment and structure |
|
| >pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201 | Back alignment and structure |
|
| >pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201 | Back alignment and structure |
|
| >pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194 | Back alignment and structure |
|
| >pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194 | Back alignment and structure |
|
| >pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194 | Back alignment and structure |
|
| >pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816 | Back alignment and structure |
|
| >pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395 | Back alignment and structure |
|
| >pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381 | Back alignment and structure |
|
| >pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381 | Back alignment and structure |
|
| >pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383 | Back alignment and structure |
|
| >pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384 | Back alignment and structure |
|
| >pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192 | Back alignment and structure |
|
| >pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291 | Back alignment and structure |
|
| >pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225 | Back alignment and structure |
|
| >pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189 | Back alignment and structure |
|
| >pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212 | Back alignment and structure |
|
| >pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226 | Back alignment and structure |
|
| >pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225 | Back alignment and structure |
|
| >pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231 | Back alignment and structure |
|
| >pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220 | Back alignment and structure |
|
| >pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220 | Back alignment and structure |
|
| >pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208 | Back alignment and structure |
|
| >pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217 | Back alignment and structure |
|
| >pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241 | Back alignment and structure |
|
| >pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219 | Back alignment and structure |
|
| >pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220 | Back alignment and structure |
|
| >pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334 | Back alignment and structure |
|
| >pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192 | Back alignment and structure |
|
| >pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220 | Back alignment and structure |
|
| >pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231 | Back alignment and structure |
|
| >pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214 | Back alignment and structure |
|
| >pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197 | Back alignment and structure |
|
| >pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110 | Back alignment and structure |
|
| >pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form Length = 103 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 296 bits (760), Expect = 4e-91
Identities = 139/743 (18%), Positives = 245/743 (32%), Gaps = 200/743 (26%)
Query: 63 FAKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
P FI PL+ E +GE P+ L+ +V+ P ++I W L +K
Sbjct: 3 MEPPYFIEPLEHVEAAIGE--PITLQCKVDG--TPEIRIAWYKEHTKLRSAPAYKMQFKN 58
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQ 181
+L + +V D G YTC+A N G +S
Sbjct: 59 NVASLVINKVDHSDVGEYTCKAENSVGAVASSAV-------------------------- 92
Query: 182 DLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY 241
L + + PP F + + + + G FE G + + V +
Sbjct: 93 -----LVIKERKL-------PPSFARKLKDVH-ETLGFPVAFECR--INGSEPLQVSWYK 137
Query: 242 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKG 301
+G+ ++ ++T + L+IL T G Y C A+N G A S L +
Sbjct: 138 DGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLT-L-SEHE 195
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
PP F S++ G+S F+C +T +K+ W + + I KM
Sbjct: 196 VPPFFDLKPVSVDLAL-GESGTFKCHVTG--TAPIKITWAKDNREIRPGGNYKMTLVENT 252
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENA 421
+ + V D+G+Y C A N G+D A +
Sbjct: 253 ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG-------------------------- 286
Query: 422 QGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQ 481
V E P+FI ++ +K+ + +E C+
Sbjct: 287 -----------VQEPPRFIKKLEPSRIVKQDEHTRYE------------CK--------- 314
Query: 482 GQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPH 541
+P + V K+ +
Sbjct: 315 -----IGGSPEIK----------VLWYKDETE-------------------------IQE 334
Query: 542 GHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK-------------- 587
++R + +L++ E+SG Y C A N GS + SLK
Sbjct: 335 SSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPV 394
Query: 588 -CVSKTNLILE-----SQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 641
+ ++ LE + +V W + ++L G +Y+ + + + IL + G
Sbjct: 395 ETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGE 454
Query: 642 YECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHL 701
Y+C+A+N GSD S+ + PP+F + +
Sbjct: 455 YQCKASNDVGSDTCVGSIT-------LKA--------------------PPRFVKKLSDI 487
Query: 702 SNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI-EASHRIRTVHAFGMVVLEILGTKIE 760
S GE +A++ G + ++V + + I S I ++ + L+ +
Sbjct: 488 S-TVVGEEVQLQATIE--GAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPA 544
Query: 761 DTGVYTCRATNKWGQAEISVNLE 783
+ G YTC+ N+ G E L
Sbjct: 545 NAGKYTCQIKNEAGTQECFATLS 567
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 248 bits (635), Expect = 4e-73
Identities = 109/621 (17%), Positives = 189/621 (30%), Gaps = 171/621 (27%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTA 119
+E P F LK P+ E ++ L++ W +G+ L+ + +T+
Sbjct: 96 KERKLPPSFARKLKDV-HETLGFPVAFECRING--SEPLQVSWYKDGELLKDDANLQTSF 152
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEK 179
TL + + G Y C A N G +S +
Sbjct: 153 IHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLT---------------------- 190
Query: 180 IQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEF 239
+ SE PP F + + L+ GE F+ G + + +
Sbjct: 191 --------------L--SEHEVPPFFDLKPVSVD-LALGESGTFKC--HVTGTAPIKITW 231
Query: 240 LYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKS 299
+ + I + L +L D G YTC A+N G+ S L V +
Sbjct: 232 AKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG-VQE- 289
Query: 300 KGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDF 359
PP+F ++ +K + +EC + PE+KV W+ + I ++ +M
Sbjct: 290 ---PPRFIKKLEPSRIVKQDEHTRYECKIGG--SPEIKVLWYKDETEIQESSKFRMSFVE 344
Query: 360 GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELE 419
V+++ + DSG+Y C A N G + ++K
Sbjct: 345 SVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK------------------------ 380
Query: 420 NAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFP 479
V E P F + V +G H E CE
Sbjct: 381 -------------VKEPPVFRKKPHPVE-TLKGADVHLE------------CE------- 407
Query: 480 SQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL 539
Q P + V+ K+ + L
Sbjct: 408 -------LQGTPPFQ----------VSWHKDKRE-------------------------L 425
Query: 540 PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQ 599
G +Y+ + + + IL + G Y+C+A+N GSD S+ + + +
Sbjct: 426 RSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLS 485
Query: 600 --------------------LPEVEWFYNGKKL-PHGHRYRTFHDFGIVILDILYCYEEN 638
V WF + ++ + I L N
Sbjct: 486 DISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPAN 545
Query: 639 SGVYECRATNKYGSDVTKASL 659
+G Y C+ N+ G+ A+L
Sbjct: 546 AGKYTCQIKNEAGTQECFATL 566
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 219 bits (559), Expect = 2e-62
Identities = 86/521 (16%), Positives = 176/521 (33%), Gaps = 80/521 (15%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
+PP F ++ +E G+ +C + PE+++ W+ + KM
Sbjct: 4 EPPYFIEPLEHVE-AAIGEPITLQCKVDG--TPEIRIAWYKEHTKLRSAPAYKMQFKNNV 60
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENA 421
+ I V D GEY C+A N G + A + + L P +++++
Sbjct: 61 ASLVINKVDHSDVGEYTCKAENSVGAVASSAVLV------IKERKLPPSFARKLKDVHET 114
Query: 422 QGQQPVAQAAPVAEAP---------KFITQISDVTQLKEGQSAHFEARLTPVTDPDL--- 469
G + P + + +++ A ++ +
Sbjct: 115 LGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATL--QILQTDQSHVGQY 172
Query: 470 VCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLV 529
C + + + + P F + V L G+S F+ +T +
Sbjct: 173 NCSASNPLGTASSSAKL-TLSEHEVPPFFDLKPVSVD-LALGESGTFKCHVTG--TAPIK 228
Query: 530 VEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL--- 586
+ W + +++ G Y+ L +L + ++G Y C A+N G D A L
Sbjct: 229 ITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 288
Query: 587 ------KCVSKTNLILESQ------------LPEVEWFYNGKKLPHGHRYRTFHDFGIVI 628
K + + ++ + + +V W+ + ++ ++R + +
Sbjct: 289 EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV 348
Query: 629 LDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSED 688
L++ E+SG Y C A N GS + SLK + E
Sbjct: 349 LEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK-------VKE------------------ 383
Query: 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
PP F + + +G H E G V + + + + + + + +
Sbjct: 384 --PPVFRKKPHPVE-TLKGADVHLECE--LQGTPPFQVSWHKDKRELRSGKKYKIMSENF 438
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSP 789
+ + IL D G Y C+A+N G ++ + +P
Sbjct: 439 LTSIHILNVDSADIGEYQCKASNDVGSDTCVGSIT--LKAP 477
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 4e-52
Identities = 88/434 (20%), Positives = 146/434 (33%), Gaps = 104/434 (23%)
Query: 49 AGKYQ---RQPSGPEETFA---------KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDP 96
G+Y P G + A P F + L + + V
Sbjct: 169 VGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPV-SVDLALGESGTFKCHVTG--TA 225
Query: 97 NLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+KI W + + + G +K T TL + +V D G YTC A N+AG+ S +
Sbjct: 226 PIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQL 285
Query: 157 YCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLS 216
+Q PP+F + + +
Sbjct: 286 G----------------------VQ-------------------EPPRFIKKLEPSRIVK 304
Query: 217 EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVY 276
+ E +E + G + V + + I+ S + R + VLE+ +ED+G Y
Sbjct: 305 QDEHTRYECKI--GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDY 362
Query: 277 TCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPEL 336
TC A N G A S +L+ V +PP F +E G H EC L P
Sbjct: 363 TCEAHNAAGSASSSTSLK-VK----EPPVFRKKPHPVE-TLKGADVHLECELQ--GTPPF 414
Query: 337 KVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKC 396
+V W + + + + K++S+ + I V S D GEY C+A N G D +I
Sbjct: 415 QVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSIT- 473
Query: 397 FGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAH 456
+ P+F+ ++SD++ G+
Sbjct: 474 ------------------------------------LKAPPRFVKKLSDIS-TVVGEEVQ 496
Query: 457 FEARLTPVTDPDLV 470
+A + +
Sbjct: 497 LQATIEGAEPISVA 510
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 225 bits (576), Expect = 5e-63
Identities = 113/787 (14%), Positives = 203/787 (25%), Gaps = 172/787 (21%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKN-DPNLKIEWIFNGKPL-----ELGSRFKTTA 119
+ + E + ++ + D + W + + E ++
Sbjct: 139 QYYEADVNKE-HVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLP 197
Query: 120 DFGFVTLDLTEVYDRD-QGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLE 178
L + EV D Y CR + T T +TK L+
Sbjct: 198 S---GELHIREVGPEDGYKSYQCRTKH----RLTGETRLSATKGRLVI------------ 238
Query: 179 KIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE 238
P + + S G
Sbjct: 239 ---------------TEPISSAVPKVVSLAKFDMKTYSGSSTMALLC--PAQGYPVPVFR 281
Query: 239 FLYNGKPIEASHRIRTVHAFGMV--VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 296
+ + + V L I +ED+G Y C N G + L V
Sbjct: 282 WYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT-V 340
Query: 297 DKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV 356
P + + G A F C T +P V W +GK I H
Sbjct: 341 T----APLSAKIDPPTQT-VDFGRPAVFTCQYT--GNPIKTVSWMKDGKAIGHSES---- 389
Query: 357 SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIR 416
V+ I V+ D G Y C N A +K + P +
Sbjct: 390 ------VLRIESVKKEDKGMYQCFVRNDRESAEASAELK------LGGRFDPPVIRQAFQ 437
Query: 417 ELENAQGQQPV----AQAAPVAEAPKFITQISDVTQLKEGQ----SAHFEARLTPVTDPD 468
E G A P E ++ +G+ + ++ + D
Sbjct: 438 EETMEPGPSVFLKCVAGGNPTPE----------ISWELDGKKIANNDRYQVGQYVTVNGD 487
Query: 469 LVCEL-FSNFFPSQG---------QQPVAQAA---PVAEAPKFITQISDVTQLKEGQSAH 515
+V L ++ + G + VA+ + V P +I Q+ + G++
Sbjct: 488 VVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP-YIRQMEKKA-IVAGETLI 545
Query: 516 FEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATN 575
+ P + W + + LP + + F + ++I ++ + Y C A N
Sbjct: 546 VTCPVA--GYPIDSIVWERDNRALPINRKQKVFPNGTLIIENV--ERNSDQATYTCVAKN 601
Query: 576 KYGSDVTK---------------------------ASLKCVSKTNLILESQLPEVEWFYN 608
+ G +L C ++W +
Sbjct: 602 QEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGG----DLPLNIDWTLD 657
Query: 609 GKKLPHGHRY-RTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNL 667
G+ + + +L I ++G + C A N G L
Sbjct: 658 GQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPL-------N 710
Query: 668 ILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE 727
+ PP++ E + ++G A E G V
Sbjct: 711 VYV--------------------PPRWILEPTDKA-FAQGSDAKVECKAD--GFPKPQVT 747
Query: 728 FLYNGKPIEASHRIRTVHAFGMV---VLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784
+ ++ V L + + + G Y C A N G +V +
Sbjct: 748 WKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMIS 807
Query: 785 VVWSPSQ 791
V
Sbjct: 808 VQAHHHH 814
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 219 bits (559), Expect = 8e-61
Identities = 111/809 (13%), Positives = 210/809 (25%), Gaps = 194/809 (23%)
Query: 49 AGKYQRQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF-NGK 107
G + P+ PVF+ + +E + P +I WI +G
Sbjct: 22 CGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIECKASGN--PMPEIIWIRSDGT 79
Query: 108 PLELGSRFKTTADFGFVTLDLTEV------YDRDQGIYTCRAWNLAGETFTSTTIYCSTK 161
+ + + G L + +Y C A N G +
Sbjct: 80 AVGDVPGLRQISSDG--KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDV------ 131
Query: 162 ESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIA 221
+ ++ + G A
Sbjct: 132 ----------------------------------HVRAVVAQYYEADVNKEH-VIRGNSA 156
Query: 222 HFEASLIP-VGDQTMTVEFLYNGKPIEASHRI--RTVHAFGMVVLEILGTKIEDT-GVYT 277
+ + V D V + + + L I ED Y
Sbjct: 157 VIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQ 216
Query: 278 CRATNKWGQAE-----ISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVN 332
CR ++ + S P + ++ + C
Sbjct: 217 CRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQ--G 274
Query: 333 DPELKVEWFHNGKPIFHKNRVKMVSDFGFV--VMDIAYVQSHDSGEYVCRAWNKYGEDFT 390
P W+ + K V + V + I DSG+Y+C N G +
Sbjct: 275 YPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESV 334
Query: 391 RATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLK 450
+ V T +
Sbjct: 335 ETVLT-------------------------------------VTAPLSAKIDPPTQT-VD 356
Query: 451 EGQSAHFEARLT--------------PVTDPD--LVCELFSNFFPS---------QGQQP 485
G+ A F + T + + L + + +
Sbjct: 357 FGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLR---IESVKKEDKGMYQCFVRNDRE 413
Query: 486 VAQA------APVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL 539
A+A + P + T ++ G S + +P + W +GKK+
Sbjct: 414 SAEASAELKLGGRFDPPVIRQAFQEET-MEPGPSVFLKCV--AGGNPTPEISWELDGKKI 470
Query: 540 PHGHRYR-----TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKT-- 592
+ RY+ T + + L+I + + G+Y+C A +K G A L
Sbjct: 471 ANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYI 530
Query: 593 ------------NLILESQ-----LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCY 635
LI+ + + W + + LP + + F + ++I ++
Sbjct: 531 RQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENV--ER 588
Query: 636 EENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFT 695
+ Y C A N+ G ++ +L ++ + P
Sbjct: 589 NSDQATYTCVAKNQEGYS---------ARGSLEVQVMVL----------------PRIIP 623
Query: 696 SEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF-GMVVLEI 754
F+ G+ S +P GD + +++ +G+ I I T VL I
Sbjct: 624 FAFEEGP-AQVGQYLTLHCS-VPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTI 681
Query: 755 LGTKIEDTGVYTCRATNKWGQAEISVNLE 783
+ G +TC A N G + + L
Sbjct: 682 EAVEASHAGNFTCHARNLAGHQQFTTPLN 710
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 6e-55
Identities = 111/649 (17%), Positives = 186/649 (28%), Gaps = 132/649 (20%)
Query: 59 PEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTT 118
P + V + + + L + P W +
Sbjct: 241 PISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQ--GYPVPVFRWYKFIEGTTRKQAVVLN 298
Query: 119 ADFGFV--TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEG 176
V TL + + D G Y C N G T + +
Sbjct: 299 DRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA---------------- 342
Query: 177 LEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMT 236
P + + + G A F G+ T
Sbjct: 343 -------------------------PLSAKIDPPTQT-VDFGRPAVFTCQYT--GNPIKT 374
Query: 237 VEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 296
V ++ +GK I S VL I K ED G+Y C N AE S L+ +
Sbjct: 375 VSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRNDRESAEASAELK-L 423
Query: 297 DKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKM- 355
+ PP + ++ G S +C +P ++ W +GK I + +R ++
Sbjct: 424 G-GRFDPPVIRQAFQEET-MEPGPSVFLKCV--AGGNPTPEISWELDGKKIANNDRYQVG 479
Query: 356 ----VSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPES 411
V+ ++I V ++D G Y C A +K G A + VY
Sbjct: 480 QYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLN------VY-------G 526
Query: 412 LARIRELENAQGQ--QPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDL 469
L IR++E + + PVA P + ++ ++ + + L
Sbjct: 527 LPYIRQMEKKAIVAGETLIVTCPVAGYPID-----SIVWERDNRALPINRKQKVFPNGTL 581
Query: 470 V--------------CELFSNFFPSQGQQPVAQAA-PVAEAPKFITQISDVTQLKEGQSA 514
+ C N +G V P+ I + + GQ
Sbjct: 582 IIENVERNSDQATYTCVA-KN---QEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYL 637
Query: 515 HFEARLTPVTDPDLVVEWFYNGKKLPHGHRY-RTFHDFGIVILDILYCYEENSGVYECRA 573
+ D L ++W +G+ + + +L I ++G + C A
Sbjct: 638 TLHCSVPG-GDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHA 696
Query: 574 TNKYGSDVTKASLKCVSKTNLILESQ--------------------LPEVEWFYNGKKLP 613
N G L ILE P+V W P
Sbjct: 697 RNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTP 756
Query: 614 HGHRYRTFHDFGIV---ILDILYCYEENSGVYECRATNKYGSDVTKASL 659
++ D V L + + N G Y C A N GS ++ +
Sbjct: 757 GEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIM 805
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 201 bits (513), Expect = 1e-54
Identities = 117/718 (16%), Positives = 219/718 (30%), Gaps = 164/718 (22%)
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEE 185
+++ + ++ A G +
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAAN------------------------------ 30
Query: 186 SLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE-FLYNGK 244
P D + P F E + + S A E G+ + +G
Sbjct: 31 ---------PPDADQKGPVFLKEPTNRIDFSNSTGAEIECKAS--GNPMPEIIWIRSDGT 79
Query: 245 PIEASHRIRTVHAFGMVVLEILGTKIEDT------GVYTCRATNKWGQAEISVNLECVDK 298
+ +R + + G L + ED VY C A N++G IS + V
Sbjct: 80 AVGDVPGLRQISSDG--KLVFPPFRAEDYRQEVHAQVYACLARNQFGSI-ISRD---VHV 133
Query: 299 SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTP-VNDPELKVEWFHNGKPIF-----HKNR 352
+ + + + G+SA +C + V D V W + + + + +
Sbjct: 134 RAVVAQYYEADVNKEH-VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGK 192
Query: 353 VKMVSDFGFVVMDIAYVQSHDS-GEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPES 411
++ G + I V D Y CR ++ + + K + S P+
Sbjct: 193 YLVLPS-GELH--IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKV 249
Query: 412 LARIR-ELENAQGQQPV-----AQAAPVAE-----APKFITQISDVTQLKEGQSAHFEAR 460
++ + +++ G + AQ PV + T+ V +
Sbjct: 250 VSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLI 309
Query: 461 LTPVTDPDL---VCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE 517
+ D +C + +N S G + V V T + G+ A F
Sbjct: 310 IKDAVVEDSGKYLCVV-NN---SVGGESVETVLTVTAPLSAKIDPPTQT-VDFGRPAVFT 364
Query: 518 ARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKY 577
+ T P V W +GK + H +L I +E+ G+Y+C N
Sbjct: 365 CQYTGN--PIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRNDR 412
Query: 578 GSDVTKASLK------------------CVSKTNLILE-----SQLPEVEWFYNGKKLPH 614
S A LK ++ L+ + PE+ W +GKK+ +
Sbjct: 413 ESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIAN 472
Query: 615 GHRYR-----TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLIL 669
RY+ T + + L+I + + G+Y+C A +K G A L +
Sbjct: 473 NDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLN-------VY 525
Query: 670 ESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVE 727
P + + GE + G ++
Sbjct: 526 G--------------------LPYIRQ----MEKKAIVAGETLIVTCPVA--GYPIDSIV 559
Query: 728 FLYNGKPIEASHRIRTVHAFGMVVLEILG-TKIEDTGVYTCRATNKWGQ-AEISVNLE 783
+ + + + + + + V G L I + D YTC A N+ G A S+ ++
Sbjct: 560 WERDNRALPINRKQK-VFPNG--TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQ 614
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 196 bits (499), Expect = 9e-53
Identities = 96/585 (16%), Positives = 172/585 (29%), Gaps = 116/585 (19%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSA 322
+ + +++ ++ A G ++ N D+ + P F + + A
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQ---KGPVFLKEPTNRIDFSNSTGA 57
Query: 323 HFECTLTPVNDPELKVEWFH-NGKPIFHKNRVKMVSDFG----FVVMDIAYVQSHDSGEY 377
EC + +P ++ W +G + ++ +S G Y Q + Y
Sbjct: 58 EIECKASG--NPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVY 115
Query: 378 VCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAP 437
C A N++G +R Y + E + R G V + +
Sbjct: 116 ACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIR--------GNSAVIKCLIPSFVA 167
Query: 438 KFITQIS---DVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQ----------- 483
F+ +S D + A ++ + + +L P G
Sbjct: 168 DFVEVVSWHTDEEENYF-PGAEYDGKYLVLPSGELH---IREVGPEDGYKSYQCRTKHRL 223
Query: 484 -----------QPVAQAAPVAEAPKFITQIS-DVTQLKEGQSAHFEARLTPVTDPDLVVE 531
+ V + PK ++ D+ + P V
Sbjct: 224 TGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQ--GYPVPVFR 281
Query: 532 WFYNGKKLPHGHRYRTFHDFGIV--ILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589
W+ + V L I E+SG Y C N G + + L
Sbjct: 282 WYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 341
Query: 590 SKTNLILESQ--------------------LPEVEWFYNGKKLPHGHRYRTFHDFGIVIL 629
+ + ++ + V W +GK + H +L
Sbjct: 342 APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES----------VL 391
Query: 630 DILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDG 689
I +E+ G+Y+C N S A LK L +
Sbjct: 392 RIESVKKEDKGMYQCFVRNDRESAEASAELK--------LGGRFD--------------- 428
Query: 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR-----TV 744
PP FQ + + G + G+ T + + +GK I + R + TV
Sbjct: 429 -PPVIRQAFQEET-MEPGPSVFLKCV--AGGNPTPEISWELDGKKIANNDRYQVGQYVTV 484
Query: 745 HAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSP 789
+ + L I D G+Y C A +K G AE S L V+
Sbjct: 485 NGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLN--VYGL 527
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 2e-34
Identities = 84/560 (15%), Positives = 146/560 (26%), Gaps = 177/560 (31%)
Query: 49 AGKYQ---RQPSGPEETFA---------KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDP 96
G YQ R E A PV + E + + L+ P
Sbjct: 401 KGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEE-TMEPGPSVFLKCVAGGN--P 457
Query: 97 NLKIEWIFNGKPLELGSRFK-----TTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETF 151
+I W +GK + R++ T L++T V+ D G+Y C A + G
Sbjct: 458 TPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAE 517
Query: 152 TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQH 211
S + + P
Sbjct: 518 HSAKL----------------------NVYG-------------------LPYIRQ---- 532
Query: 212 LSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILG-T 268
+ + GE + G ++ + + + + + + + V G L I
Sbjct: 533 MEKKAIVAGETLIVTCPVA--GYPIDSIVWERDNRALPINRKQK-VFPNG--TLIIENVE 587
Query: 269 KIEDTGVYTCRATNKWGQ-AEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECT 327
+ D YTC A N+ G A S+ ++ P+ + G C+
Sbjct: 588 RNSDQATYTCVAKNQEGYSARGSLEVQ-----VMVLPRIIPFAFEEGPAQVGQYLTLHCS 642
Query: 328 LTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV-VMDIAYVQSHDSGEYVCRAWNKYG 386
+ D L ++W +G+ I + V+ I V++ +G + C A N G
Sbjct: 643 VPG-GDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAG 701
Query: 387 EDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDV 446
+ V P++I + +D
Sbjct: 702 HQQFTTPLN-------------------------------------VYVPPRWILEPTDK 724
Query: 447 TQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVT 506
+G A E C+ A P + VT
Sbjct: 725 A-FAQGSDAKVE------------CK--------------ADGFPKPQ----------VT 747
Query: 507 QLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENS 566
K E + + G L + + N
Sbjct: 748 WKKAVGDTPGEYK--------------------DLKKSDNIRVEEG--TLHVDNIQKTNE 785
Query: 567 GVYECRATNKYGSDVTKASL 586
G Y C A N GS ++ +
Sbjct: 786 GYYLCEAINGIGSGLSAVIM 805
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 93.1 bits (231), Expect = 1e-19
Identities = 42/247 (17%), Positives = 65/247 (26%), Gaps = 53/247 (21%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
P I E Q L L V D L I+W +G+ + T+
Sbjct: 617 VLPRIIPFAFEEGPAQVGQYLTLHCSVP-GGDLPLNIDWTLDGQAISEDLGITTSRVGRR 675
Query: 124 V-TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQD 182
L + V G +TC A NLAG +T + +
Sbjct: 676 GSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPL----------------------NVYV 713
Query: 183 LEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 242
PP++ E + ++G A E G V +
Sbjct: 714 -------------------PPRWILEPTDKA-FAQGSDAKVECKAD--GFPKPQVTWKKA 751
Query: 243 GKPIEASHRIRTVHAFGMV---VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKS 299
++ V L + + + G Y C A N G +V + V
Sbjct: 752 VGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQA- 810
Query: 300 KGQPPKF 306
Sbjct: 811 ---HHHH 814
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816 | Back alignment and structure |
|---|
Score = 76.5 bits (188), Expect = 2e-14
Identities = 39/283 (13%), Positives = 77/283 (27%), Gaps = 60/283 (21%)
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTKASLKCVSK------------------TNLILE 597
+++ + ++ A GS A+ + T +E
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 598 -----SQLPEVEWF-YNGKKLPHGHRYRTFHDFG-IVILDIL---YCYEENSGVYECRAT 647
+ +PE+ W +G + R G +V Y E ++ VY C A
Sbjct: 61 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 120
Query: 648 NKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEG 707
N++GS +S+ + ++ G
Sbjct: 121 NQFGSI--------ISRDVHVRAVVAQYYEADVNKE-------------------HVIRG 153
Query: 708 EIAHFEASLIP-VGDQTMTVEFLYNGKPIEASHRI--RTVHAFGMVVLEILGTKIEDT-G 763
A + + V D V + + + L I ED
Sbjct: 154 NSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYK 213
Query: 764 VYTCRATNKWGQAE-ISVNLECVVWSPSQTKLVYSLFEVPQPD 805
Y CR ++ +S +V + + V + + + D
Sbjct: 214 SYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFD 256
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 222 bits (566), Expect = 6e-62
Identities = 103/784 (13%), Positives = 195/784 (24%), Gaps = 196/784 (25%)
Query: 59 PEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTT 118
F V + + + + N + + G+R
Sbjct: 121 YRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWD 180
Query: 119 ADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLE 178
+ GF + G+ C A + I
Sbjct: 181 SKKGFT---IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGY---------------- 221
Query: 179 KIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE 238
R H LS GE + + +
Sbjct: 222 ----------------------RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFN 259
Query: 239 FLYNGKPIEASHRIR--------TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 290
+ Y + + + + L I G D G+YTC A++ + S
Sbjct: 260 WEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNS 319
Query: 291 VNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHK 350
+ +K F S ++SL G+ P +++W+ NG P+
Sbjct: 320 TFVRVHEK---PFVAFGSGMESLVEATVGERVRIPAKYL--GYPPPEIKWYKNGIPLESN 374
Query: 351 NRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPE 410
+ +K V+ I V D+G Y N ++ +
Sbjct: 375 HTIKAGH-----VLTIMEVSERDTGNYTVILTNPISKEKQSHVV---------------- 413
Query: 411 SLARIRELENAQGQQPVAQAAPVAEAPKFITQ--ISDVTQLKEGQSAHFEARLTPVTDPD 468
L V P+ + IS V + G +
Sbjct: 414 ------SLV-------------VYVPPQIGEKSLISPVDSYQYGTTQTLT---------- 444
Query: 469 LVCELFSNFFPSQGQQPVAQAAPVAEAPKFIT-QISDVTQLKEGQSAHFEARLTPVTDPD 527
C A P P I + S +
Sbjct: 445 --CT--------------VYAIP---PPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEW 485
Query: 528 LVVEWFYNGKKL-PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
VE F G K+ + +++ + ++ S +Y+C A NK G S
Sbjct: 486 RSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISF 545
Query: 587 KCVSKTNLILESQL-------------------PEVEWFYNGKKLPHGHRYR-------- 619
+ L+ + + W+ G + H
Sbjct: 546 HVTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKN 605
Query: 620 ------------TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNL 667
+ I+I+++ ++ G Y C A ++ L
Sbjct: 606 LDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVR------QL 659
Query: 668 ILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE 727
+ + P T ++ + S GE + G+ +
Sbjct: 660 TVLER-----------------VAPTITGNLENQT-TSIGESIEVSCTAS--GNPPPQIM 699
Query: 728 FLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVW 787
+ + + + I G L I + ED G+YTC+A + G A++ ++
Sbjct: 700 WFKDNETLVEDSGIVLKD--GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFF--IIE 755
Query: 788 SPSQ 791
+
Sbjct: 756 GAQE 759
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 194 bits (495), Expect = 2e-52
Identities = 90/732 (12%), Positives = 179/732 (24%), Gaps = 158/732 (21%)
Query: 135 DQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGV 194
++ C A S ++
Sbjct: 8 AVALWLCVETRAASVGLPSVSL-------------------------------------- 29
Query: 195 PDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR- 253
P+ + + L+ + +++L+ + R+
Sbjct: 30 ------DLPRLSIQKDILT-IKANTTLQITCRGQR------DLDWLWPNNQSGSEQRVEV 76
Query: 254 --TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIK 311
L I DTG Y C + I V ++ +
Sbjct: 77 TECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVV 136
Query: 312 SLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQS 371
+ + C + N + + + NR+ S GF I
Sbjct: 137 YITE-NKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFT---IPSYMI 192
Query: 372 HDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQ-------GQ 424
+G C A + I +Y L P + E
Sbjct: 193 SYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTEL 252
Query: 425 QPVAQ---AAPVAEAPKFITQISDVTQLKEGQSAHFEARLT--PVTDPDL---VCELFSN 476
P ++ D+ + F + LT VT D C S+
Sbjct: 253 NVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAA-SS 311
Query: 477 FFPSQGQQPVAQAAPVAEAPK--FITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFY 534
+ + V E P F + + + + G+ A+ P ++W+
Sbjct: 312 ---GLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLG--YPPPEIKWYK 366
Query: 535 NGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK-CVSKTN 593
NG L H + H +L I+ E ++G Y TN + + V
Sbjct: 367 NGIPLESNHTIKAGH-----VLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPP 421
Query: 594 LILESQLPE-------------------------VEWFYNGKKL---------------- 612
I E L + W++ ++
Sbjct: 422 QIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYP 481
Query: 613 -----------------PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVT 655
+ +++ + ++ S +Y+C A NK G
Sbjct: 482 CEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGER 541
Query: 656 KASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRP-PQFTSEFQHLSNLSEGEIAHFEA 714
S + L+ + ++ + + D T L
Sbjct: 542 VISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPI-----HVG 596
Query: 715 SLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 774
L + + + N S ++++E+ ++D G Y C A ++
Sbjct: 597 ELPTPVCKNLDTLWKLNATMFSNSTN-------DILIMELKNASLQDQGDYVCLAQDRKT 649
Query: 775 QAEISVNLECVV 786
+ V + V
Sbjct: 650 KKRHCVVRQLTV 661
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 139 bits (350), Expect = 4e-34
Identities = 82/585 (14%), Positives = 149/585 (25%), Gaps = 165/585 (28%)
Query: 41 VQEVEHALAGKYQ---RQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEA--------Q 89
+ V + G Y ++ V KP G +EA
Sbjct: 294 IDGVTRSDQGLYTCAASSGLMTKKNSTF--VRVHEKPFVAFGSGMESLVEATVGERVRIP 351
Query: 90 VEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGE 149
+ P +I+W NG PLE K L + EV +RD G YT N +
Sbjct: 352 AKYLGYPPPEIKWYKNGIPLESNHTIKAGH-----VLTIMEVSERDTGNYTVILTNPISK 406
Query: 150 TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPA-------GVPDSEDGRP 202
S + SL+ P I ++ +P P
Sbjct: 407 EKQSHVV------SLVV--YVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIP-----PP 453
Query: 203 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTVHAFGMV 261
+Q + + ++ +VE G IE + ++ +
Sbjct: 454 HHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKT 513
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDS 321
V ++ + +Y C A NK G+ E ++ P+ T ++ + +S
Sbjct: 514 VSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTR-----GPEIT--LQPDMQPTEQES 566
Query: 322 AHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV--------------------SDFGF 361
CT + W+ G + ++ S
Sbjct: 567 VSLWCTAD--RSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDI 624
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENA 421
++M++ D G+YVC A ++ + + + +
Sbjct: 625 LIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQ------LTV----------------- 661
Query: 422 QGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQ 481
AP + + T G+S C
Sbjct: 662 ----------LERVAPTITGNLENQT-TSIGESIEVS------------CT--------- 689
Query: 482 GQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPH 541
A P + + K+ + L
Sbjct: 690 -----ASGNPPPQ----------IMWFKDNE-------------------------TLVE 709
Query: 542 GHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
L I +E+ G+Y C+A + G +A
Sbjct: 710 DSGIVLKDGNR--NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFF 752
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 3e-32
Identities = 56/397 (14%), Positives = 111/397 (27%), Gaps = 50/397 (12%)
Query: 4 ATNSKGSATTSGTLKCLGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQP----SGP 59
TN S + L P + V+ G Q + P
Sbjct: 400 LTNPISKEKQSHVVS--------LVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIP 451
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPN-LKIEWIFNGKPLELGS-RFKT 117
P I + +P + P +E G +E+ +F
Sbjct: 452 -----PPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFAL 506
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGL 177
L +Y C A N G + + + + P +
Sbjct: 507 IEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEIT---LQPDMQPTE 563
Query: 178 EKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTV 237
++ L + R T L L + +
Sbjct: 564 QESVSLWCTADRST----------FENLTWYKLGPQPLPI-----HVGELPTPVCKNLDT 608
Query: 238 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD 297
+ N S ++++E+ ++D G Y C A ++ + V + +
Sbjct: 609 LWKLNATMFSNSTN-------DILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQ-LT 660
Query: 298 KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVS 357
+ P T ++++ G+S CT + +P ++ WF + + + + + +
Sbjct: 661 VLERVAPTITGNLENQT-TSIGESIEVSCTAS--GNPPPQIMWFKDNETLVEDSGIVLKD 717
Query: 358 DFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ I V+ D G Y C+A + G A
Sbjct: 718 GNRNLT--IRRVRKEDEGLYTCQACSVLGCAKVEAFF 752
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 87.5 bits (216), Expect = 7e-18
Identities = 29/252 (11%), Positives = 70/252 (27%), Gaps = 44/252 (17%)
Query: 567 GVYECRATNKYGSDVTKASLK----CVSKTNLILES----QL-----PEVEWFYNGKKLP 613
++ C T + SL + K L +++ Q+ +++W + +
Sbjct: 10 ALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIKANTTLQITCRGQRDLDWLWPNNQSG 69
Query: 614 HGHRYR---TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILE 670
R L I ++G Y+C + V ++
Sbjct: 70 SEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQ---------- 119
Query: 671 SQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY 730
+ + D + +E ++ + L + + +++ Y
Sbjct: 120 ------DYRSPFIASVSDQHGVVYITE-------NKNKTVVIPC-LGSISNLNVSLCARY 165
Query: 731 -NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSP 789
+ + +RI G I I G+ C A + + + VV
Sbjct: 166 PEKRFVPDGNRISWDSKKG---FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYR 222
Query: 790 SQTKLVYSLFEV 801
++ +
Sbjct: 223 IYDVVLSPSHGI 234
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772 | Back alignment and structure |
|---|
Score = 65.2 bits (158), Expect = 5e-11
Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 7/108 (6%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV 124
P L+ + + + + +P +I W + + L S
Sbjct: 666 APTITGNLENQ-TTSIGESIEVSCTAS--GNPPPQIMWFKDNETLVEDSGIVLKDGNR-- 720
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTST--TIYCSTKESLIERTQH 170
L + V D+G+YTC+A ++ G I + +++ +ERT H
Sbjct: 721 NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLERTHH 768
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 184 bits (468), Expect = 2e-52
Identities = 57/353 (16%), Positives = 110/353 (31%), Gaps = 59/353 (16%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTA 119
+ F P F+ L E + L+ +V I W + + + + +
Sbjct: 2 IDPFTGPHFVEYLSWEVTGEC--NVLLKCKVAN-IKKETHIVWYKDEREISVDEKHDFKD 58
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEK 179
G TL +TE +D GIY + G+ + + + L+
Sbjct: 59 --GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSA--- 113
Query: 180 IQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEF 239
+ S +EG + + + + V +
Sbjct: 114 ---------------------TDLKIQST-------AEGIQLYSF---VTYYVEDLKVNW 142
Query: 240 LYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL------ 293
+NG I S R++T + L+I D G Y + + +V+L
Sbjct: 143 SHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYD 202
Query: 294 ----------ECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHN 343
+ K + + +++G + + C + DP +V W N
Sbjct: 203 EAYAEFQRLKQAAIAEKNRARVLGGLPDVVT-IQEGKALNLTCNVW--GDPPPEVSWLKN 259
Query: 344 GKPIFHKNRVKMVSDF-GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
K + + + + I V + DSG+Y NKYG + + T+
Sbjct: 260 EKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 312
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 177 bits (450), Expect = 5e-50
Identities = 46/322 (14%), Positives = 98/322 (30%), Gaps = 45/322 (13%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF 551
P F+ +S ++ + + ++ + + W+ + +++ ++
Sbjct: 4 PFTGPHFVEYLSW--EVTGECNVLLKCKVAN-IKKETHIVWYKDEREISVDEKHDFKD-- 58
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASL------------------------- 586
GI L I ++++G+YE + G D ++ L
Sbjct: 59 GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKI 118
Query: 587 KCVSKTNLILESQL-----PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 641
+ ++ + +V W +NG + + R +T + L I + G
Sbjct: 119 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGK 178
Query: 642 YECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHL 701
Y + L + E Q + +E R +
Sbjct: 179 YVMELFDGKTGHQKTVDLSGQAYDEAYAEFQ------RLKQAAIAEKNRARVLGGLPDVV 232
Query: 702 SNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR-TVHAFGMVVLEILGTKIE 760
+ + EG+ + + GD V +L N K + + A I G
Sbjct: 233 T-IQEGKALNLTCN--VWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTA 289
Query: 761 DTGVYTCRATNKWGQAEISVNL 782
D+G Y NK+G +
Sbjct: 290 DSGKYGLVVKNKYGSETSDFTV 311
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 7e-41
Identities = 56/395 (14%), Positives = 110/395 (27%), Gaps = 90/395 (22%)
Query: 198 EDGRPPQFTSEFQHLSN-LSEGEIAHFEASLIPVGDQTMT-VEFLYNGKPIEASHRIRTV 255
+ P F ++LS ++ + + + T + + + + I +
Sbjct: 3 DPFTGPHFV---EYLSWEVTGECNVLLKCKV--ANIKKETHIVWYKDEREISVDEKHDFK 57
Query: 256 HAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL---ECVDKSKGQPPKFTSHIKS 312
G+ L I +D G+Y + G+ + + L + K
Sbjct: 58 D--GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATD 115
Query: 313 LEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSH 372
L+ + +T +LKV W HNG I + +RVK + + I +
Sbjct: 116 LKIQSTAEGIQLYSFVT-YYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPN 174
Query: 373 DSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAP 432
D G+YV ++ + + + A+ Q+ A
Sbjct: 175 DKGKYVMELFDGKTGHQKTVDLSG-----------------QAYDEAYAEFQRLKQAAIA 217
Query: 433 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPV 492
+ + + DV ++EG++ + P
Sbjct: 218 EKNRARVLGGLPDVVTIQEGKALNLTCN--------------------------VWGDPP 251
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
E V+ LK + + H F
Sbjct: 252 PE----------VSWLKNEK---------ALA---------------SDDHCNLKFEAGR 277
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
I +SG Y NKYGS+ + ++
Sbjct: 278 TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 312
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 3e-33
Identities = 41/293 (13%), Positives = 75/293 (25%), Gaps = 60/293 (20%)
Query: 2 VKATNSKGSATTSGTLKCLGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEE 61
V + +G + L K++ +E + + + +
Sbjct: 78 VILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQST---------------- 121
Query: 62 TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
E L+ +LK+ W NG + R KT
Sbjct: 122 -----------------AEGIQLYSFV---TYYVEDLKVNWSHNGSAIRYSDRVKTGVTG 161
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQ 181
+ L + E D+G Y ++ + + + Q K EK
Sbjct: 162 EQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEK-- 219
Query: 182 DLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY 241
+ + + EG+ + + GD V +L
Sbjct: 220 -------------------NRARVLGGLPDVVTIQEGKALNLTCN--VWGDPPPEVSWLK 258
Query: 242 NGKPIEASHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
N K + + A I G D+G Y NK+G +
Sbjct: 259 NEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTV 311
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 8e-28
Identities = 29/194 (14%), Positives = 63/194 (32%), Gaps = 22/194 (11%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
+ W+ + +++ ++ GI L I ++++G+YE + G D ++ L
Sbjct: 37 THIVWYKDEREISVDEKHDFKD--GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL- 93
Query: 661 CVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG 720
+ + L S E S +
Sbjct: 94 ------------------VDEAFKELMMEVCKKIALSATDLKIQSTAE-GIQLYSFVTYY 134
Query: 721 DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
+ + V + +NG I S R++T + L+I D G Y + + +V
Sbjct: 135 VEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTV 194
Query: 781 NLECVVWSPSQTKL 794
+L + + +
Sbjct: 195 DLSGQAYDEAYAEF 208
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 5e-27
Identities = 41/312 (13%), Positives = 73/312 (23%), Gaps = 87/312 (27%)
Query: 433 VAEAPKFITQISDVTQLKEGQSAHFEARLT---PVTD------------------PDLVC 471
P F+ +S ++ + + ++ T D +C
Sbjct: 4 PFTGPHFVEYLSW--EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGIC 61
Query: 472 ELF-SNFFPS------------QGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEA 518
L + F +G+ + + ++ ++
Sbjct: 62 TLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKI-ALSATDLKIQS 120
Query: 519 RLTPVT--------DPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYE 570
+ DL V W +NG + + R +T + L I + G Y
Sbjct: 121 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYV 180
Query: 571 CRATNKYGSDVTKASLKCVSKTNLILESQL------------------------------ 600
+ L + E Q
Sbjct: 181 MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKAL 240
Query: 601 -----------PEVEWFYNGKKLPHGHRYR-TFHDFGIVILDILYCYEENSGVYECRATN 648
PEV W N K L F I +SG Y N
Sbjct: 241 NLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKN 300
Query: 649 KYGSDVTKASLK 660
KYGS+ + ++
Sbjct: 301 KYGSETSDFTVS 312
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 3e-52
Identities = 77/332 (23%), Positives = 122/332 (36%), Gaps = 54/332 (16%)
Query: 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
A P F + L + + V +KI W + + + G +K T
Sbjct: 3 MAPPFFDLKPVS-VDLALGESGTFKCHVT--GTAPIKITWAKDNREIRPGGNYKMTLVEN 59
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQD 182
TL + +V D G YTC A N+AG+ S + +E
Sbjct: 60 TATLTVLKVTKGDAGQYTCYASNVAGKD--SCSAQLGVQE-------------------- 97
Query: 183 LEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 242
PP+F + + + + E +E + G + V + +
Sbjct: 98 -------------------PPRFIKKLEPSRIVKQDEHTRYECKI--GGSPEIKVLWYKD 136
Query: 243 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQ 302
I+ S + R + VLE+ +ED+G YTC A N G A S +L+ V +
Sbjct: 137 ETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK-VKE---- 191
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
PP F +E G H EC L P +V W + + + + K++S+
Sbjct: 192 PPVFRKKPHPVE-TLKGADVHLECELQ--GTPPFQVSWHKDKRELRSGKKYKIMSENFLT 248
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ I V S D GEY C+A N G +I
Sbjct: 249 SIHILNVDSADIGEYQCKASNDVGSYTCVGSI 280
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 171 bits (434), Expect = 5e-48
Identities = 57/311 (18%), Positives = 110/311 (35%), Gaps = 54/311 (17%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGI 553
P F + V L G+S F+ +T + + W + +++ G Y+
Sbjct: 4 APPFFDLKPVSVD-LALGESGTFKCHVT--GTAPIKITWAKDNREIRPGGNYKMTLVENT 60
Query: 554 VILDILYCYEENSGVYECRATNKYGSDVTKASL---------KCVSKTNLILESQ----- 599
L +L + ++G Y C A+N G D A L K + + ++ + +
Sbjct: 61 ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYE 120
Query: 600 -------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652
+V W+ + ++ ++R + +L++ E+SG Y C A N GS
Sbjct: 121 CKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS 180
Query: 653 DVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF 712
+ SLK + E PP F + + +G H
Sbjct: 181 ASSSTSLK-------VKE--------------------PPVFRKKPHPVE-TLKGADVHL 212
Query: 713 EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNK 772
E G V + + + + + + + + + + IL D G Y C+A+N
Sbjct: 213 ECE--LQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASND 270
Query: 773 WGQAEISVNLE 783
G ++
Sbjct: 271 VGSYTCVGSIT 281
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 167 bits (425), Expect = 7e-47
Identities = 72/385 (18%), Positives = 124/385 (32%), Gaps = 109/385 (28%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
PP F + + L+ GE F+ G + + + + + I +
Sbjct: 5 PPFFDLKPVSVD-LALGESGTFKCH--VTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 61
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDS 321
L +L D G YTC A+N G+ S L V + PP+F ++ +K +
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG-VQE----PPRFIKKLEPSRIVKQDEH 116
Query: 322 AHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRA 381
+EC + PE+KV W+ + I ++ +M V+++ + DSG+Y C A
Sbjct: 117 TRYECKIG--GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEA 174
Query: 382 WNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFIT 441
N G + ++K V E P F
Sbjct: 175 HNAAGSASSSTSLK-------------------------------------VKEPPVFRK 197
Query: 442 QISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQ 501
+ V +G H E CE Q P +
Sbjct: 198 KPHPVE-TLKGADVHLE------------CE--------------LQGTPPFQ------- 223
Query: 502 ISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYC 561
V+ K+ + +L G +Y+ + + + IL
Sbjct: 224 ---VSWHKDKR-------------------------ELRSGKKYKIMSENFLTSIHILNV 255
Query: 562 YEENSGVYECRATNKYGSDVTKASL 586
+ G Y+C+A+N GS S+
Sbjct: 256 DSADIGEYQCKASNDVGSYTCVGSI 280
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 147 bits (374), Expect = 7e-40
Identities = 65/377 (17%), Positives = 113/377 (29%), Gaps = 121/377 (32%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
PP F S++ L G+S F+C +T +K+ W + + I KM
Sbjct: 5 PPFFDLKPVSVD-LALGESGTFKCHVT--GTAPIKITWAKDNREIRPGGNYKMTLVENTA 61
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQ 422
+ + V D+G+Y C A N G+D A +
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG--------------------------- 94
Query: 423 GQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQG 482
V E P+FI ++ +K+ + +E C+
Sbjct: 95 ----------VQEPPRFIKKLEPSRIVKQDEHTRYE------------CK---------- 122
Query: 483 QQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG 542
+P V K+ +
Sbjct: 123 ----IGGSP---EI-------KVLWYKDETE-------------------------IQES 143
Query: 543 HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLI--LESQ- 599
++R + +L++ E+SG Y C A N GS + SLK
Sbjct: 144 SKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVE 203
Query: 600 -----------------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVY 642
+V W + ++L G +Y+ + + + IL + G Y
Sbjct: 204 TLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEY 263
Query: 643 ECRATNKYGSDVTKASL 659
+C+A+N GS S+
Sbjct: 264 QCKASNDVGSYTCVGSI 280
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 1e-29
Identities = 42/189 (22%), Positives = 73/189 (38%), Gaps = 31/189 (16%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
++ W + +++ G Y+ L +L + ++G Y C A+N G D A L
Sbjct: 35 IKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLG 94
Query: 661 CVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG 720
V + PP+F + + + + E +E + G
Sbjct: 95 -VQE--------------------------PPRFIKKLEPSRIVKQDEHTRYECKI--GG 125
Query: 721 DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
+ V + + I+ S + R + VLE+ +ED+G YTC A N G A S
Sbjct: 126 SPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSST 185
Query: 781 NLECVVWSP 789
+L+ V P
Sbjct: 186 SLK--VKEP 192
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 2e-29
Identities = 48/264 (18%), Positives = 92/264 (34%), Gaps = 55/264 (20%)
Query: 40 KVQEVEHALAGKYQ---RQPSGPEETFA------KPVFIVPLKPEFKLGEAQPLHLEAQV 90
V +V AG+Y +G + A P FI L+P + + + E ++
Sbjct: 64 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKI 123
Query: 91 EPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGET 150
P +K+ W + ++ S+F+ + L++ + D G YTC A N AG
Sbjct: 124 G--GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSA 181
Query: 151 FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQ 210
+ST++ K+++ PP F +
Sbjct: 182 SSSTSL----------------------KVKE-------------------PPVFRKKPH 200
Query: 211 HLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKI 270
+ +G H E G V + + + + + + + + + + IL
Sbjct: 201 PVE-TLKGADVHLECE--LQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDS 257
Query: 271 EDTGVYTCRATNKWGQAEISVNLE 294
D G Y C+A+N G ++
Sbjct: 258 ADIGEYQCKASNDVGSYTCVGSIT 281
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 180 bits (459), Expect = 2e-48
Identities = 95/758 (12%), Positives = 172/758 (22%), Gaps = 189/758 (24%)
Query: 80 EAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV--------------- 124
E + + L P++ W +
Sbjct: 13 EGKEVLLLVHNLPQHLF--GYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPN 70
Query: 125 -TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
+L + + D G YT +T +
Sbjct: 71 ASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQF-------------------------- 104
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEFLY 241
P+ + + + + + F E T +
Sbjct: 105 -------------RVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQDA-----TYLWWV 146
Query: 242 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA---EISVNLECVDK 298
N + + S R++ + L + DT Y C N + +N+
Sbjct: 147 NNQSLPVSPRLQLSNGNR--TLTLFNVTRNDTASYKCETQNPVSARRSDSVILNV----- 199
Query: 299 SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD 358
P T + + G++ + C +P + WF NG +
Sbjct: 200 -LYGPDAPTISPLNTS-YRSGENLNLSCHAAS--NPPAQYSWFVNGTFQQSTQELF---- 251
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIREL 418
I + ++SG Y C+A N + I
Sbjct: 252 -------IPNITVNNSGSYTCQAHNSDTGLNRTTV--------TTITVYAEPPKPFITSN 296
Query: 419 EN--AQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEA-----RLTPVTDPDL-- 469
+ + + VA + L L VT D+
Sbjct: 297 NSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGP 356
Query: 470 -VCELFSNFFPSQGQQPVAQAA-PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPD 527
C + N V P T T + G + +P
Sbjct: 357 YECGI-QN---ELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAAS--NPP 410
Query: 528 LVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
W +G H + I +I E+NSG+Y C+A N
Sbjct: 411 AQYSWLIDGNIQQHTQE--------LFISNIT---EKNSGLYTCQANNSASGHSRTTVKT 459
Query: 588 -------------------CVSKTNLILE----SQLPEVEWFYNGKKLPHGHRYRTFHDF 624
K + +Q W+ NG+ LP R + +
Sbjct: 460 ITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGN 519
Query: 625 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVP 684
L + ++ Y C N ++ + + L+
Sbjct: 520 R--TLTLFNVTRNDARAYVCGIQNSVSANRSDP---------VTLDVLYG---------- 558
Query: 685 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTV 744
P S G + + + + NG P + +
Sbjct: 559 ------PDTPIISPPDSS-YLSGANLNLSCH--SASNPSPQYSWRINGIPQQHTQV---- 605
Query: 745 HAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
L I + G Y C +N S+
Sbjct: 606 -------LFIAKITPNNNGTYACFVSNLATGRNNSIVK 636
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 175 bits (444), Expect = 2e-46
Identities = 89/649 (13%), Positives = 158/649 (24%), Gaps = 178/649 (27%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVT 125
P + + + + + E + W N + L + R + + T
Sbjct: 111 PKPSISSNNSKPVEDKDAVAFTCEPE---TQDATYLWWVNNQSLPVSPRLQLSNGNR--T 165
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEE 185
L L V D Y C N S ++
Sbjct: 166 LTLFNVTRNDTASYKCETQNPVSAR-RSDSV----------------------------- 195
Query: 186 SLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKP 245
L P T + S GE + + + NG
Sbjct: 196 ILNVLYG---------PDAPTISPLNTS-YRSGENLNLSCH--AASNPPAQYSWFVNGTF 243
Query: 246 IEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPK 305
+++ L I + ++G YTC+A N + +PPK
Sbjct: 244 QQSTQE-----------LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTT--ITVYAEPPK 290
Query: 306 FTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD 365
+ ++D D+ C W+ N + + R+++ +D +
Sbjct: 291 PFITSNNSNPVEDEDAVALTC---EPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLT-- 345
Query: 366 IAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQ 425
+ V +D G Y C N+ D + V L+
Sbjct: 346 LLSVTRNDVGPYECGIQNELSVDHSDP---------VILN-------------------- 376
Query: 426 PVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDL---------------- 469
V P T T + G +
Sbjct: 377 -------VLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELF 429
Query: 470 ------------VCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE 517
C+ +N + V AE PK ++ +++ + F
Sbjct: 430 ISNITEKNSGLYTCQA-NNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFT 488
Query: 518 ARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKY 577
+ W+ NG+ LP R + + L + ++ Y C N
Sbjct: 489 CE---PEAQNTTYLWWVNGQSLPVSPRLQLSNGNR--TLTLFNVTRNDARAYVCGIQNSV 543
Query: 578 GSDVTK---------------------------ASLKCVSKTNLILESQLPEVEWFYNGK 610
++ + +L C S +N P+ W NG
Sbjct: 544 SANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASN-----PSPQYSWRINGI 598
Query: 611 KLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
H L I N+G Y C +N
Sbjct: 599 PQQHTQV-----------LFIAKITPNNNGTYACFVSNLATGRNNSIVK 636
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 170 bits (432), Expect = 8e-45
Identities = 90/628 (14%), Positives = 165/628 (26%), Gaps = 158/628 (25%)
Query: 234 TMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
V P A ++ L I DTG YT E +
Sbjct: 46 IGYVIGTQQATPGPAYSGREIIYPNA--SLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQ 103
Query: 294 ECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRV 353
V + PK + + + ++D D+ F C + W+ N + + R+
Sbjct: 104 FRV---YPELPKPSISSNNSKPVEDKDAVAFTCE---PETQDATYLWWVNNQSLPVSPRL 157
Query: 354 KMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLA 413
++ + + + V +D+ Y C N + + V L+
Sbjct: 158 QLSNGNRTLT--LFNVTRNDTASYKCETQNPVSARRSDS---------VILN-------- 198
Query: 414 RIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE--ARLTPV------- 464
V P T T + G++ + A P
Sbjct: 199 -------------------VLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFV 239
Query: 465 ------TDPDLVCELFSNFFPS------------QGQQPVAQAAPV---AEAPKFITQIS 503
+ +L N + + AE PK +
Sbjct: 240 NGTFQQSTQELF---IPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSN 296
Query: 504 DVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYE 563
+ +++ + + W+ N + LP R + +D L +L
Sbjct: 297 NSNPVEDEDAVALTC---EPEIQNTTYLWWVNNQSLPVSPRLQLSNDNR--TLTLLSVTR 351
Query: 564 ENSGVYECRATNKYGSDVTKA---------------------------SLKCVSKTNLIL 596
+ G YEC N+ D + SL C + +N
Sbjct: 352 NDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASN--- 408
Query: 597 ESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 656
+ W +G H + I +I E+NSG+Y C+A N
Sbjct: 409 --PPAQYSWLIDGNIQQHTQE--------LFISNIT---EKNSGLYTCQANNSASGHSRT 455
Query: 657 ASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASL 716
+ S P+ + + + + + F
Sbjct: 456 TVKT----------------------ITVSA--ELPKPSISSNNSKPVEDKDAVAFTCE- 490
Query: 717 IPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 776
Q T + NG+ + S R++ + L + D Y C N
Sbjct: 491 --PEAQNTTYLWWVNGQSLPVSPRLQLSNGNR--TLTLFNVTRNDARAYVCGIQNSVSAN 546
Query: 777 E-ISVNLECVVWSPSQTKLVYSLFEVPQ 803
V L+ V++ P +
Sbjct: 547 RSDPVTLD-VLYGPDTPIISPPDSSYLS 573
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 4e-30
Identities = 73/523 (13%), Positives = 120/523 (22%), Gaps = 135/523 (25%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAY---------- 368
G P W+ + ++ + V AY
Sbjct: 14 GKEVLLLVHNLP--QHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNA 71
Query: 369 ------VQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQ 422
+ +D+G Y + AT + + P+ + +
Sbjct: 72 SLLIQNIIQNDTGFYTLHVIKSDLVN-EEATGQ------FRVYPELPKPSISSNNSKPVE 124
Query: 423 GQQPV-----AQAAPVAEAPKFITQISDVTQLKEGQSAHFEAR-----------LTPVTD 466
+ V + QS R L VT
Sbjct: 125 DKDAVAFTCEPETQDA-----------TYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTR 173
Query: 467 PDL---VCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPV 523
D CE N ++ V V P T T + G++ +
Sbjct: 174 NDTASYKCET-QNPVSARRSDSVILN--VLYGPDAPTISPLNTSYRSGENLNLSCHAAS- 229
Query: 524 TDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 583
+P WF NG L I NSG Y C+A N
Sbjct: 230 -NPPAQYSWFVNGTFQQSTQE-----------LFIPNITVNNSGSYTCQAHNSDTGLNRT 277
Query: 584 ASLK-------------------CVSKTNLILE----SQLPEVEWFYNGKKLPHGHRYRT 620
+ + L Q W+ N + LP R +
Sbjct: 278 TVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQL 337
Query: 621 FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQP 680
+D L +L + G YEC N+ D + + V
Sbjct: 338 SNDNRT--LTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLY---------------- 379
Query: 681 AGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR 740
P T + G + +L +G + +
Sbjct: 380 ---------GPDDPTISPSYT-YYRPGVNLSLSCH--AASNPPAQYSWLIDGNIQQHTQE 427
Query: 741 IRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
L I +++G+YTC+A N +
Sbjct: 428 -----------LFISNITEKNSGLYTCQANNSASGHSRTTVKT 459
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 5e-30
Identities = 56/394 (14%), Positives = 100/394 (25%), Gaps = 102/394 (25%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV 124
FI E + L + E N W N + L + R + + D
Sbjct: 289 PKPFITSNNSNPVEDE-DAVALTCEPE---IQNTTYLWWVNNQSLPVSPRLQLSNDNR-- 342
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLE 184
TL L V D G Y C N + I
Sbjct: 343 TLTLLSVTRNDVGPYECGIQNELSVDHSDPVIL--------------------------- 375
Query: 185 ESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGK 244
+ P T + G + +L +G
Sbjct: 376 ------------NVLYGPDDPTISPSYT-YYRPGVNLSLSCH--AASNPPAQYSWLIDGN 420
Query: 245 PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPP 304
+ + L I +++G+YTC+A N + + + P
Sbjct: 421 IQQHTQE-----------LFISNITEKNSGLYTCQANNSASGHSRTTVKT-I-TVSAELP 467
Query: 305 KFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVM 364
K + + + ++D D+ F C W+ NG+ + R+++ + +
Sbjct: 468 KPSISSNNSKPVEDKDAVAFTCE---PEAQNTTYLWWVNGQSLPVSPRLQLSNGNR--TL 522
Query: 365 DIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQ 424
+ V +D+ YVC N + + V LD
Sbjct: 523 TLFNVTRNDARAYVCGIQNSVSANRSD---------PVTLD------------------- 554
Query: 425 QPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE 458
V P + G + +
Sbjct: 555 --------VLYGPDTPIISPPDSSYLSGANLNLS 580
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 1e-27
Identities = 51/357 (14%), Positives = 93/357 (26%), Gaps = 85/357 (23%)
Query: 49 AGKYQ---RQPSGPEET-------FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNL 98
G Y+ + + + P L L +P
Sbjct: 354 VGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAAS--NPPA 411
Query: 99 KIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYC 158
+ W+ +G + L ++ + +++ G+YTC+A N A +T
Sbjct: 412 QYSWLIDGNIQQHTQ-----------ELFISNITEKNSGLYTCQANNSASGHSRTTVK-- 458
Query: 159 STKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEG 218
I E P+ + + + +
Sbjct: 459 --------------------TITVSAE----------------LPKPSISSNNSKPVEDK 482
Query: 219 EIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTC 278
+ F Q T + NG+ + S R++ + L + D Y C
Sbjct: 483 DAVAFTCE---PEAQNTTYLWWVNGQSLPVSPRLQLSNGNR--TLTLFNVTRNDARAYVC 537
Query: 279 RATNKWGQAE-ISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELK 337
N V L+ V P L G + + C ++P +
Sbjct: 538 GIQNSVSANRSDPVTLD-V---LYGPDTPIISPPDSSYLS-GANLNLSCHSA--SNPSPQ 590
Query: 338 VEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
W NG P H + IA + +++G Y C N
Sbjct: 591 YSWRINGIPQQHTQVLF-----------IAKITPNNNGTYACFVSNLATGRNNSIVK 636
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642 | Back alignment and structure |
|---|
Score = 88.1 bits (218), Expect = 3e-18
Identities = 42/349 (12%), Positives = 79/349 (22%), Gaps = 95/349 (27%)
Query: 499 ITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI--- 555
+T S + EG+ P W+ + +
Sbjct: 2 LTIESTPFNVAEGKEVLLLVHNLP--QHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGP 59
Query: 556 -------------LDILYCYEENSGVYECRATNKYGSDVT-------------------- 582
L I + ++G Y +
Sbjct: 60 AYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNN 119
Query: 583 --------KASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYC 634
+ C E+Q W+ N + LP R + + L +
Sbjct: 120 SKPVEDKDAVAFTCEP------ETQDATYLWWVNNQSLPVSPRLQLSNGNR--TLTLFNV 171
Query: 635 YEENSGVYECRATNKYGSDVTK-ASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQ 693
++ Y+C N + + L V P
Sbjct: 172 TRNDTASYKCETQNPVSARRSDSVILN----------------------VLYG----PDA 205
Query: 694 FTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLE 753
T + S GE + + + NG +++ L
Sbjct: 206 PTISPLNTS-YRSGENLNLSCH--AASNPPAQYSWFVNGTFQQSTQE-----------LF 251
Query: 754 ILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKLVYSLFEVP 802
I + ++G YTC+A N + V++ + S P
Sbjct: 252 IPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNP 300
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 7e-46
Identities = 46/347 (13%), Positives = 100/347 (28%), Gaps = 55/347 (15%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
F + L+ E P + W + E R + +
Sbjct: 1 GIDPFTKEVVVNVDDDGVISLNFECDK---MTPKSEFSWSKDYVSTEDSPRLEVESKGNK 57
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
+ ++ D GIY+C + G +S I + L+ + K
Sbjct: 58 TKMTFKDLGMDDLGIYSCDVTDTDGIA-SSYLIDEEELKRLLALSHEHK----------- 105
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG 243
P + L +G++ + V +++N
Sbjct: 106 -----------------FPTVPVKSELAVEILEKGQVRFWMQ--AEKLSGNAKVNYIFNE 146
Query: 244 KPIEAS--HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL-------- 293
K I +++ G++ + + + ED G YT + + +V L
Sbjct: 147 KEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKL 206
Query: 294 ------ECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI 347
+ + + Q P F ++ + + +C + E + W+ + + I
Sbjct: 207 QKEAEFQRQEWIRKQGPHFVEYLSWE--VTGECNVLLKCKVA-NIKKETHIVWYKDEREI 263
Query: 348 FHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ + I D+G Y + G+D +R +
Sbjct: 264 SVDEKHDFKDGIC--TLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 308
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 2e-43
Identities = 40/326 (12%), Positives = 91/326 (27%), Gaps = 54/326 (16%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
P + +V S +FE P W + R
Sbjct: 1 GIDPFTKEVVVNVDD-DGVISLNFECD---KMTPKSEFSWSKDYVSTEDSPRLEVESKGN 56
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL------------ 600
+ ++ G+Y C T+ G + + K L L +
Sbjct: 57 KTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELA 116
Query: 601 ---------------------PEVEWFYNGKKLPHGHRYRTFHDF--GIVILDILYCYEE 637
+V + +N K++ G +Y+ D GI+ + + +E
Sbjct: 117 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDE 176
Query: 638 NSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSE 697
+ G Y + + ++ + L+ + + + + P F
Sbjct: 177 DEGTYTFQLQDGKATNHSTV--------VLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEY 228
Query: 698 FQHLSNLSEGEIAHFEASLIPVGDQTMT-VEFLYNGKPIEASHRIRTVHAFGMVVLEILG 756
++ + + + T + + + + I + G+ L I
Sbjct: 229 LS--WEVTGECNVLLKCKV--ANIKKETHIVWYKDEREISVDEKHDFKD--GICTLLITE 282
Query: 757 TKIEDTGVYTCRATNKWGQAEISVNL 782
+D G+Y + G+ + + L
Sbjct: 283 FSKKDAGIYEVILKDDRGKDKSRLKL 308
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 127 bits (319), Expect = 2e-32
Identities = 41/272 (15%), Positives = 81/272 (29%), Gaps = 35/272 (12%)
Query: 200 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
G P ++ +FE + + E S R+
Sbjct: 1 GIDPFTKEVVVNVD-DDGVISLNFEC---DKMTPKSEFSWSKDYVSTEDSPRLEVESKGN 56
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK-------SKGQPPKFTSHIKS 312
+ ++D G+Y+C T+ G A + E K P +
Sbjct: 57 KTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELA 116
Query: 313 LEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDF--GFVVMDIAYVQ 370
+E L+ G + KV + N K IF + KM D G + M + +Q
Sbjct: 117 VEILEKGQVRFWMQ--AEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQ 174
Query: 371 SHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQA 430
D G Y + + + + L + ++++ Q Q+ +
Sbjct: 175 DEDEGTYTFQLQDGKATNHSTVV-------------LVGDVFKKLQKEAEFQRQEWI--- 218
Query: 431 APVAEAPKFITQISDVTQLKEGQSAHFEARLT 462
+ P F+ +S + + ++
Sbjct: 219 --RKQGPHFVEYLSWEV--TGECNVLLKCKVA 246
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 122 bits (306), Expect = 1e-30
Identities = 44/317 (13%), Positives = 97/317 (30%), Gaps = 40/317 (12%)
Query: 301 GQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG 360
G P + +++ S +FEC P+ + W + R+++ S
Sbjct: 1 GIDPFTKEVVVNVD-DDGVISLNFEC---DKMTPKSEFSWSKDYVSTEDSPRLEVESKGN 56
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYL---DSLQPESLARIRE 417
M + D G Y C + G + + K + L +
Sbjct: 57 KTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELA 116
Query: 418 LENAQGQQPV--AQAAPVAEAPKF--------ITQISDVTQLKEGQSAHFEARLTPVTDP 467
+E + Q QA ++ K I + + + E + + D
Sbjct: 117 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDE 176
Query: 468 D----------------LVCELFSNFFPSQGQQPVAQAAPVA--EAPKFITQISDVTQLK 509
D L + F ++ Q + P F+ +S
Sbjct: 177 DEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEV--T 234
Query: 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVY 569
+ + ++ + + W+ + +++ ++ GI L I ++++G+Y
Sbjct: 235 GECNVLLKCKVA-NIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEFSKKDAGIY 291
Query: 570 ECRATNKYGSDVTKASL 586
E + G D ++ L
Sbjct: 292 EVILKDDRGKDKSRLKL 308
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 7e-27
Identities = 30/206 (14%), Positives = 61/206 (29%), Gaps = 19/206 (9%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
E W + R + ++ G+Y C T+ G + +
Sbjct: 32 SEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDE 91
Query: 661 CVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG 720
K L L E P + L +G++ +
Sbjct: 92 EELKRLLALS---------------HEHKFPTVPVKSELAVEILEKGQVRFWMQ--AEKL 134
Query: 721 DQTMTVEFLYNGKPIEAS--HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 778
V +++N K I +++ G++ + + + ED G YT + +
Sbjct: 135 SGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHS 194
Query: 779 SVNLECVVWSPSQTKLVYSLFEVPQP 804
+V L V+ Q + + E +
Sbjct: 195 TVVLVGDVFKKLQKEAEFQRQEWIRK 220
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 3e-25
Identities = 33/243 (13%), Positives = 77/243 (31%), Gaps = 32/243 (13%)
Query: 54 RQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS 113
++ P V + ++ E + Q E K N K+ +IFN K + G
Sbjct: 95 KRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAE-KLSGNAKVNYIFNEKEIFEGP 153
Query: 114 RFKTTADF--GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHP 171
++K D G + + + ++ D D+G YT + + ++ +
Sbjct: 154 KYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLV-------------- 199
Query: 172 KGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG 231
++ + + + P F ++ + +
Sbjct: 200 --------GDVFKKLQKEAEFQRQEWIRKQGPHFVEYLS--WEVTGECNVLLKCKV--AN 247
Query: 232 DQTMT-VEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 290
+ T + + + + I + G+ L I +D G+Y + G+ +
Sbjct: 248 IKKETHIVWYKDEREISVDEKHDFKD--GICTLLITEFSKKDAGIYEVILKDDRGKDKSR 305
Query: 291 VNL 293
+ L
Sbjct: 306 LKL 308
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 96.2 bits (239), Expect = 6e-22
Identities = 29/210 (13%), Positives = 68/210 (32%), Gaps = 45/210 (21%)
Query: 491 PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD 550
+ V L++GQ + + V + +N K++ G +Y+ D
Sbjct: 103 EHKFPTVPVKSELAVEILEKGQVRFWMQ--AEKLSGNAKVNYIFNEKEIFEGPKYKMHID 160
Query: 551 F--GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL-------- 600
GI+ + + +E+ G Y + + ++ + L L E++
Sbjct: 161 RNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRK 220
Query: 601 -------------------------------PEVEWFYNGKKLPHGHRYRTFHDFGIVIL 629
+ W+ + +++ ++ GI L
Sbjct: 221 QGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTL 278
Query: 630 DILYCYEENSGVYECRATNKYGSDVTKASL 659
I ++++G+YE + G D ++ L
Sbjct: 279 LITEFSKKDAGIYEVILKDDRGKDKSRLKL 308
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 3e-12
Identities = 22/155 (14%), Positives = 48/155 (30%), Gaps = 29/155 (18%)
Query: 2 VKATNSKGSATTSGTLKCLGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEE 61
+ + K + ++ L D++ + Q E +++
Sbjct: 183 FQLQDGKATNHSTVVLV----GDVFKKLQKEAEFQRQEWIRKQ----------------- 221
Query: 62 TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
P F+ L E + L+ +V I W + + + + +
Sbjct: 222 ---GPHFVEYLSWEVTGEC--NVLLKCKVA-NIKKETHIVWYKDEREISVDEKHDFKDGI 275
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
TL +TE +D GIY + G+ + +
Sbjct: 276 C--TLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 308
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312 | Back alignment and structure |
|---|
Score = 65.0 bits (158), Expect = 2e-11
Identities = 15/98 (15%), Positives = 29/98 (29%), Gaps = 4/98 (4%)
Query: 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
G P ++ +FE + + E S R+
Sbjct: 1 GIDPFTKEVVVNVD-DDGVISLNFEC---DKMTPKSEFSWSKDYVSTEDSPRLEVESKGN 56
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786
+ ++D G+Y+C T+ G A + E +
Sbjct: 57 KTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEEL 94
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 142 bits (361), Expect = 3e-39
Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 10/196 (5%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTVHAF 258
+ P FT Q + + EG A FEA + G V + +G+ I S ++ +
Sbjct: 4 QAPTFTQPLQSVV-VLEGSTATFEAHI--SGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKD 318
G L I ++G Y+ +ATN GQA + L ++ PP F ++S+ ++
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA--PPNFVQRLQSMT-VRQ 117
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
G + +T P V+++ +G I ++ + + IA DSG Y
Sbjct: 118 GSQVRLQVRVT--GIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYS 175
Query: 379 CRAWNKYGEDFTRATI 394
A N G + A +
Sbjct: 176 VNATNSVGRATSTAEL 191
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 4e-30
Identities = 46/194 (23%), Positives = 75/194 (38%), Gaps = 30/194 (15%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHG--HRYRTF 548
+AP F + V + EG +A FEA ++ P V WF +G+ + +
Sbjct: 2 TTQAPTFTQPLQSVV-VLEGSTATFEAH---ISGFPVPEVSWFRDGQVISTSTLPGVQIS 57
Query: 549 HDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKT---------------- 592
G L I + NSG Y +ATN G + A L ++T
Sbjct: 58 FSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQ 117
Query: 593 --NLILE-----SQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECR 645
+ L+ P V+++ +G ++ ++ + + L I Y E+SG Y
Sbjct: 118 GSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVN 177
Query: 646 ATNKYGSDVTKASL 659
ATN G + A L
Sbjct: 178 ATNSVGRATSTAEL 191
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 8e-29
Identities = 43/185 (23%), Positives = 66/185 (35%), Gaps = 29/185 (15%)
Query: 601 PEVEWFYNGKKLPHG--HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 658
PEV WF +G+ + + G L I + NSG Y +ATN G + A
Sbjct: 35 PEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAE 94
Query: 659 LKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIP 718
L + PP F Q ++ + +G +
Sbjct: 95 LLVK------------------------AETAPPNFVQRLQSMT-VRQGSQVRLQVR--V 127
Query: 719 VGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 778
G T V+F +G I++S + + L I ED+G Y+ ATN G+A
Sbjct: 128 TGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATS 187
Query: 779 SVNLE 783
+ L
Sbjct: 188 TAELL 192
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 1e-28
Identities = 42/231 (18%), Positives = 79/231 (34%), Gaps = 46/231 (19%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSR--FKTTADFGF 123
P F PL+ + E EA + P ++ W +G+ + + + + G
Sbjct: 6 PTFTQPLQSV-VVLEGSTATFEAHIS--GFPVPEVSWFRDGQVISTSTLPGVQISFSDGR 62
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
L + V + G Y+ +A N +G+ ++ + + +
Sbjct: 63 AKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA-------------------- 102
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG 243
PP F Q ++ + +G + G T V+F +G
Sbjct: 103 ------------------PPNFVQRLQSMT-VRQGSQVRLQVR--VTGIPTPVVKFYRDG 141
Query: 244 KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
I++S + + L I ED+G Y+ ATN G+A + L
Sbjct: 142 AEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELL 192
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 2e-17
Identities = 33/163 (20%), Positives = 64/163 (39%), Gaps = 40/163 (24%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFH--KNRVKMVSDF 359
Q P FT ++S+ + +G +A FE ++ P +V WF +G+ I V++
Sbjct: 4 QAPTFTQPLQSVV-VLEGSTATFEAHIS--GFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 360 GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELE 419
G + I V +SG Y +A N G+ + A + ++ E+
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELL-----------VKAET-------- 101
Query: 420 NAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLT 462
P F+ ++ +T +++G + R+T
Sbjct: 102 ---------------APPNFVQRLQSMT-VRQGSQVRLQVRVT 128
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 3e-16
Identities = 40/195 (20%), Positives = 72/195 (36%), Gaps = 46/195 (23%)
Query: 433 VAEAPKFITQISDVTQLKEGQSAHFEARLT--P----------------------VTDPD 468
+AP F + V + EG +A FEA ++ P ++ D
Sbjct: 2 TTQAPTFTQPLQSVV-VLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSD 60
Query: 469 LVCELF-SNFFPS-QGQ----------QPVAQAA----PVAEAPKFITQISDVTQLKEGQ 512
+L + G+ Q + A P F+ ++ +T +++G
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMT-VRQGS 119
Query: 513 SAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYEC 571
+ R VT P VV+++ +G ++ ++ + + L I Y E+SG Y
Sbjct: 120 QVRLQVR---VTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSV 176
Query: 572 RATNKYGSDVTKASL 586
ATN G + A L
Sbjct: 177 NATNSVGRATSTAEL 191
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 1e-13
Identities = 18/97 (18%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTA 119
+ A P F+ L+ + + + L+ +V P +++ +G ++ F+ +
Sbjct: 98 KAETAPPNFVQRLQSM-TVRQGSQVRLQVRVT--GIPTPVVKFYRDGAEIQSSLDFQISQ 154
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ +L + E Y D G Y+ A N G ++ +
Sbjct: 155 EGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAEL 191
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 145 bits (366), Expect = 8e-38
Identities = 71/493 (14%), Positives = 114/493 (23%), Gaps = 137/493 (27%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF 258
+ P + + E E Q + + +GK +
Sbjct: 5 KYPVLKDQPAEVL-FRENNPTVLECIIEGND---QGVKYSWKKDGKSYNWQEHNAALR-K 59
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKD 318
L L + D G Y C A G A V + K + ++
Sbjct: 60 DEGSLVFLRPQASDEGHYQCFAETPAGVASSRV----ISFRKTYLIASPAKTHEKTPIE- 114
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN-------RVKMVSDFGFVVMDIAYVQS 371
G +C L P P+ + W R+ D +
Sbjct: 115 GRPFQLDCVL-PNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDV 173
Query: 372 HDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAA 431
D +YVC A N ++ + V +
Sbjct: 174 SDIYKYVCTAKNAAVDEEVVLVEY---------------------------EIKGVTKDN 206
Query: 432 PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAP 491
+ +S K G C + + P
Sbjct: 207 SGYKGEPVPQYVSKDMMAKAGDVTMIY------------C--------------MYGSNP 240
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT--FH 549
+ +F NGK + R +
Sbjct: 241 MGY-----------------------------------PNYFKNGKDVNGNPEDRITRHN 265
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV-----------SKTNLILES 598
L E+ GVY C N G + V +
Sbjct: 266 RTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQ 325
Query: 599 QL-----------PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRAT 647
+ P V W +N K L G T D G+VI + + G Y CRAT
Sbjct: 326 DVTIPCKVTGLPAPNVVWSHNAKPLSGGR--ATVTDSGLVIKGV---KNGDKGYYGCRAT 380
Query: 648 NKYGSDVTKASLK 660
N++G + ++
Sbjct: 381 NEHGDKYFETLVQ 393
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 3e-36
Identities = 73/518 (14%), Positives = 125/518 (24%), Gaps = 165/518 (31%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI-FHKNRVKMVSDFG 360
+ P + ++ + EC + ND +K W +GK + ++ + D G
Sbjct: 5 KYPVLKDQPAEVL-FRENNPTVLECIIEG-NDQGVKYSWKKDGKSYNWQEHNAALRKDEG 62
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELEN 420
+V Q+ D G Y C A G +R R
Sbjct: 63 SLV--FLRPQASDEGHYQCFAETPAGVASSRV--------------------ISFR---- 96
Query: 421 AQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPS 480
+ + T EG+ + C
Sbjct: 97 ------------KTYLIASPAKTHEKT-PIEGRPFQLD------------C--------- 122
Query: 481 QGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLP 540
+ A P +T K A N
Sbjct: 123 ----VLPNAYPKPL----------ITWKKRLSGA------------------DPNADVTD 150
Query: 541 HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTN------- 593
R D + + + Y C A N + +
Sbjct: 151 FDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYK 210
Query: 594 -------------------LILE-----SQLPEVEWFYNGKKLPHGHRYRT--FHDFGIV 627
++ + + +F NGK + R +
Sbjct: 211 GEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGK 270
Query: 628 ILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSE 687
L E+ GVY C N G + L + S
Sbjct: 271 RLLFKTTLPEDEGVYTCEVDNGVGKPQKHS-------LKLTVVS---------------- 307
Query: 688 DGRPPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 745
P++ + + + + +G+ + + G V + +N KP+ T
Sbjct: 308 ---APKYEQKPEKVIVVKQGQDVTIPCKVT----GLPAPNVVWSHNAKPLSGGRATVTDS 360
Query: 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
L I G K D G Y CRATN+ G ++
Sbjct: 361 -----GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 393
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 7e-35
Identities = 59/343 (17%), Positives = 100/343 (29%), Gaps = 63/343 (18%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPL-------ELGSRFKTT 118
+ + E +P L+ + P P I W + R
Sbjct: 101 IASPAKTHEKTPI-EGRPFQLDCVL-PNAYPKPLITWKKRLSGADPNADVTDFDRRITAG 158
Query: 119 ADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLE 178
D +T+ D Y C A N A +
Sbjct: 159 PDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLV----------------------- 195
Query: 179 KIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE 238
+ +S P + + G++ + +
Sbjct: 196 -------EYEIKGVTKDNSGYKGEPVPQYVSKDMM-AKAGDVTMIYC--MYGSNPMGYPN 245
Query: 239 FLYNGKPIEAS--HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE---ISVNL 293
+ NGK + + RI + L T ED GVYTC N G+ + + + +
Sbjct: 246 YFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTV 305
Query: 294 ECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNR 352
PK+ + + +K G C V P V W HN KP+ R
Sbjct: 306 V-------SAPKYEQKPEKVIVVKQGQDVTIPC---KVTGLPAPNVVWSHNAKPL-SGGR 354
Query: 353 VKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + I V++ D G Y CRA N++G+ + ++
Sbjct: 355 ATVTDS----GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 393
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 2e-34
Identities = 80/540 (14%), Positives = 131/540 (24%), Gaps = 167/540 (30%)
Query: 64 AKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK-TTADF 121
PV F+ P LE +E + +K W +GK D
Sbjct: 5 KYPVLKDQPAEVLFRENN--PTVLECIIEGNDQG-VKYSWKKDGKSYNWQEHNAALRKDE 61
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQ 181
G +L D+G Y C A AG +
Sbjct: 62 G--SLVFLRPQASDEGHYQCFAETPAGVASSRVI-------------------------- 93
Query: 182 DLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY 241
S R+ ++ + EG + +P + +
Sbjct: 94 ----SFRK----------TYLIASPAKTHEKT-PIEGRPFQLDCV-LPNAYPKPLITWKK 137
Query: 242 NGKPI-------EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ-----AEI 289
+ RI + + + D Y C A N E
Sbjct: 138 RLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEY 197
Query: 290 SVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI-- 347
+ D S + ++ K GD C ++P +F NGK +
Sbjct: 198 EIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYG--SNPMGYPNYFKNGKDVNG 255
Query: 348 FHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSL 407
++R+ + + D G Y C N G+ +
Sbjct: 256 NPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHS--------------- 300
Query: 408 QPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDP 467
++ V APK+ + V +K+GQ
Sbjct: 301 -----LKLT----------------VVSAPKYEQKPEKVIVVKQGQDVTIP--------- 330
Query: 468 DLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPD 527
C+ P AP V +
Sbjct: 331 ---CK--------------VTGLP---APN-------VVWSHNAKP-------------- 349
Query: 528 LVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L G T D G+VI + + G Y CRATN++G + ++
Sbjct: 350 -----------LSGGR--ATVTDSGLVIKGV---KNGDKGYYGCRATNEHGDKYFETLVQ 393
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 1e-30
Identities = 49/318 (15%), Positives = 82/318 (25%), Gaps = 53/318 (16%)
Query: 491 PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD 550
PV + P Q ++V +E E + D + W +GK
Sbjct: 2 PVDKYPVLKDQPAEVL-FRENNPTVLECIIEG-NDQGVKYSWKKDGKSYNWQEHNAALRK 59
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDVTK-ASLKCVSKTNLILESQ---------- 599
L L + G Y+C A G ++ S + ++
Sbjct: 60 DEGS-LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPF 118
Query: 600 -----------LPEVEWFYNGKKLPH-------GHRYRTFHDFGIVILDILYCYEENSGV 641
P + W R D + + +
Sbjct: 119 QLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYK 178
Query: 642 YECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHL 701
Y C A N + E L E + +S P + +
Sbjct: 179 YVCTAKNAAVDE----------------EVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDM 222
Query: 702 SNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTVHAFGMVVLEILGTKI 759
G++ + + + NGK + + RI + L T
Sbjct: 223 M-AKAGDVTMIYC--MYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLP 279
Query: 760 EDTGVYTCRATNKWGQAE 777
ED GVYTC N G+ +
Sbjct: 280 EDEGVYTCEVDNGVGKPQ 297
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 1e-18
Identities = 43/264 (16%), Positives = 75/264 (28%), Gaps = 60/264 (22%)
Query: 35 AAGLEKVQEVEHALAGKYQRQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKN 94
AA E+V VE+ + + +PV K + +
Sbjct: 186 AAVDEEVVLVEYEI----KGVTKDNSGYKGEPVPQYVSKDM-MAKAGDVTMIYCMYG--S 238
Query: 95 DPNLKIEWIFNGKPLELGS--RFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFT 152
+P + NGK + R L D+G+YTC N G+
Sbjct: 239 NPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKP-Q 297
Query: 153 STTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHL 212
++ + P++ + + +
Sbjct: 298 KHSLKLTVVS---------------------------------------APKYEQKPEKV 318
Query: 213 SNLSEGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKI 270
+ +G+ + + G V + +N KP+ T L I G K
Sbjct: 319 IVVKQGQDVTIPCKVT----GLPAPNVVWSHNAKPLSGGRATVTDS-----GLVIKGVKN 369
Query: 271 EDTGVYTCRATNKWGQAEISVNLE 294
D G Y CRATN+ G ++
Sbjct: 370 GDKGYYGCRATNEHGDKYFETLVQ 393
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 139 bits (351), Expect = 1e-37
Identities = 38/201 (18%), Positives = 70/201 (34%), Gaps = 21/201 (10%)
Query: 212 LSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIE 271
L S E S + + + V + +NG I S R++T + L+I
Sbjct: 11 LKIQSTAEGIQLY-SFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPN 69
Query: 272 DTGVYTCRATNKWGQAEISVNL----------------ECVDKSKGQPPKFTSHIKSLEG 315
D G Y + + +V+L + K + +
Sbjct: 70 DKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVT- 128
Query: 316 LKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDF-GFVVMDIAYVQSHDS 374
+++G + + C + DP +V W N K + + + + I V + DS
Sbjct: 129 IQEGKALNLTCNVW--GDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADS 186
Query: 375 GEYVCRAWNKYGEDFTRATIK 395
G+Y NKYG + + T+
Sbjct: 187 GKYGLVVKNKYGSETSDFTVS 207
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-33
Identities = 32/184 (17%), Positives = 56/184 (30%), Gaps = 10/184 (5%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
+V W +NG + + R +T + L I + G Y + L
Sbjct: 33 LKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLS 92
Query: 661 CVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG 720
+ E Q + +E R ++ + EG+ + ++ G
Sbjct: 93 GQAYDEAYAEFQRLK------QAAIAEKNRARVLGGLPDVVT-IQEGKALNLTCNV--WG 143
Query: 721 DQTMTVEFLYNGKPIEASHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 779
D V +L N K + + A I G D+G Y NK+G
Sbjct: 144 DPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSD 203
Query: 780 VNLE 783
+
Sbjct: 204 FTVS 207
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 126 bits (317), Expect = 3e-33
Identities = 38/224 (16%), Positives = 65/224 (29%), Gaps = 32/224 (14%)
Query: 80 EAQPLHLEAQVE--------PKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEV 131
A L +++ E +LK+ W NG + R KT + L + E
Sbjct: 7 SATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEP 66
Query: 132 YDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQP 191
D+G Y ++ + + + Q K EK
Sbjct: 67 TPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEK------------ 114
Query: 192 AGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR 251
R ++ + EG+ + ++ GD V +L N K + +
Sbjct: 115 --------NRARVLGGLPDVVT-IQEGKALNLTCNV--WGDPPPEVSWLKNEKALAQTDH 163
Query: 252 IR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
A I G D+G Y NK+G +
Sbjct: 164 CNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 6e-28
Identities = 34/200 (17%), Positives = 52/200 (26%), Gaps = 43/200 (21%)
Query: 503 SDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCY 562
+D+ + + +T DL V W +NG + + R +T + L I
Sbjct: 9 TDLKIQSTAEGIQLYSFVT-YYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPT 67
Query: 563 EENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL---------------------- 600
+ G Y + L + E Q
Sbjct: 68 PNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVV 127
Query: 601 -------------------PEVEWFYNGKKLPHGHRYR-TFHDFGIVILDILYCYEENSG 640
PEV W N K L F I +SG
Sbjct: 128 TIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSG 187
Query: 641 VYECRATNKYGSDVTKASLK 660
Y NKYGS+ + ++
Sbjct: 188 KYGLVVKNKYGSETSDFTVS 207
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 84.5 bits (209), Expect = 1e-18
Identities = 27/144 (18%), Positives = 50/144 (34%), Gaps = 18/144 (12%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
+ +T +LKV W HNG I + +RVK + + I +D G+YV
Sbjct: 17 AEGIQLYSFVT-YYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYV 75
Query: 379 CRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPK 438
++ + S Q A A+ Q+ A +
Sbjct: 76 MELFDGKTGHQKTVDL-----------SGQAYDEAY------AEFQRLKQAAIAEKNRAR 118
Query: 439 FITQISDVTQLKEGQSAHFEARLT 462
+ + DV ++EG++ + +
Sbjct: 119 VLGGLPDVVTIQEGKALNLTCNVW 142
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 2e-17
Identities = 27/156 (17%), Positives = 44/156 (28%), Gaps = 26/156 (16%)
Query: 2 VKATNSKGSATTSGTLKCLGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEE 61
++ + K + L + Y E Q AA EK
Sbjct: 76 MELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKN-------------------- 115
Query: 62 TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
+ + L + E + L+L V DP ++ W+ N K L +
Sbjct: 116 ---RARVLGGLPDVVTIQEGKALNLTCNV--WGDPPPEVSWLKNEKALAQTDHCNLKFEA 170
Query: 122 -GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ V D G Y N G + T+
Sbjct: 171 GRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTV 206
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 79.5 bits (196), Expect = 6e-17
Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 5/111 (4%)
Query: 479 PSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGK 537
++ Q+ A + + + DV ++EG++ + V DP V W N K
Sbjct: 100 YAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCN---VWGDPPPEVSWLKNEK 156
Query: 538 KLPHGHRYR-TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L F I +SG Y NKYGS+ + ++
Sbjct: 157 ALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212 | Back alignment and structure |
|---|
Score = 71.1 bits (174), Expect = 4e-14
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
Query: 701 LSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIE 760
L S E S + + + V + +NG I S R++T + L+I
Sbjct: 11 LKIQSTAEGIQLY-SFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPN 69
Query: 761 DTGVYTCRATNKWGQAEISVNL 782
D G Y + + +V+L
Sbjct: 70 DKGKYVMELFDGKTGHQKTVDL 91
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 3e-37
Identities = 67/335 (20%), Positives = 102/335 (30%), Gaps = 63/335 (18%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL---GSRFKTTAD 120
F+ + + L+ +V DP I W N + L SR
Sbjct: 120 GPLRFLSQTESI-TAFMGDTVLLKCEVIG--DPMPTIHWQKNQQDLNPIPGDSRVVVLPS 176
Query: 121 FGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKI 180
G L ++ + D G+Y C A N A T
Sbjct: 177 -G--ALQISRLQPGDSGVYRCSARNPASTR-TGNEAEVRILS------------------ 214
Query: 181 QDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVE 238
D R F ++ EG+ A E S G +
Sbjct: 215 ---------------DPGLHRQLYFLQRPSNVI-AIEGKDAVLECCVS----GYPPPSFT 254
Query: 239 FLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
+L + I+ + ++ L I +D+G YTC T K S L +
Sbjct: 255 WLRGEEVIQLRSKKYSLLGGS--NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV- 311
Query: 299 SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD 358
PP F +H +L + FEC ++ P V W NG + + ++V
Sbjct: 312 ----PPWFLNHPSNLYAYE-SMDIEFECAVS--GKPVPTVNWMKNGDVVIPSDYFQIVGG 364
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRAT 393
+ I V D G Y C A N+ G + A
Sbjct: 365 -SNLR--ILGVVKSDEGFYQCVAENEAGNAQSSAQ 396
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 9e-37
Identities = 79/536 (14%), Positives = 140/536 (26%), Gaps = 170/536 (31%)
Query: 279 RATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKV 338
R ++ + + + F S ++ G + C+ + +
Sbjct: 2 RWGSELESSHHHHHH-----GGRRSLHFVSEPSDAVTMR-GGNVLLNCSAES-DRGVPVI 54
Query: 339 EWFHNGKPIFHK--NRVKMVSDFGFVV--MDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+W +G + +R + + + ++ + + D G Y C A T
Sbjct: 55 KWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRT- 113
Query: 395 KCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQS 454
A++ VA +F++Q +T G +
Sbjct: 114 ------------------AKVM----------------VAGPLRFLSQTESIT-AFMGDT 138
Query: 455 AHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSA 514
+ CE P+ + K Q
Sbjct: 139 VLLK------------CE--------------VIGDPMPT----------IHWQKNQQD- 161
Query: 515 HFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRAT 574
L P+ R + I + +SGVY C A
Sbjct: 162 -----LNPIPG----------------DSRVVVLPSGALQISRLQ---PGDSGVYRCSAR 197
Query: 575 NKYGSDVTKA----------------------SLKCVSKTNLILE-----SQLPEVEWFY 607
N + ++ + + +LE P W
Sbjct: 198 NPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLR 257
Query: 608 NGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNL 667
+ + + + L I +++SG Y C T K + A L
Sbjct: 258 GEEVIQLRSKKYSLLGGS--NLLISNVTDDDSGTYTCVVTYKNENISASAELT------- 308
Query: 668 ILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE 727
+L PP F + +L E FE + G TV
Sbjct: 309 VLV--------------------PPWFLNHPSNLY-AYESMDIEFECA--VSGKPVPTVN 345
Query: 728 FLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
++ NG + S + + L ILG D G Y C A N+ G A+ S L
Sbjct: 346 WMKNGDVVIPSDYFQ-IVGGSN--LRILGVVKSDEGFYQCVAENEAGNAQSSAQLI 398
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 141 bits (358), Expect = 1e-36
Identities = 78/535 (14%), Positives = 137/535 (25%), Gaps = 165/535 (30%)
Query: 63 FAKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
F+ G + L E + I+W +G L LG +
Sbjct: 19 RRSLHFVSEPSDAVTMRGG--NVLLNCSAES-DRGVPVIKWKKDGLILALGMDDRKQQLP 75
Query: 122 G----FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGL 177
+ + + D+G+Y C A + S T
Sbjct: 76 NGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG--------------- 120
Query: 178 EKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTV 237
P +F S+ + ++ G+ + +GD T+
Sbjct: 121 ------------------------PLRFLSQTESIT-AFMGDTVLLKCE--VIGDPMPTI 153
Query: 238 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ-----AEISVN 292
+ N + + V L+I + D+GVY C A N AE+ +
Sbjct: 154 HWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRIL 213
Query: 293 LECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNR 352
D + F ++ + +G A EC ++ P W + I +++
Sbjct: 214 ---SDPGLHRQLYFLQRPSNVIAI-EGKDAVLECCVS--GYPPPSFTWLRGEEVIQLRSK 267
Query: 353 VKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESL 412
+ + I+ V DSG Y C K A +
Sbjct: 268 KYSLLGGS--NLLISNVTDDDSGTYTCVVTYKNENISASAELT----------------- 308
Query: 413 ARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCE 472
V P F+ S++ E FE C
Sbjct: 309 --------------------VLVPPWFLNHPSNLY-AYESMDIEFE------------CA 335
Query: 473 LFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEW 532
PV V +K G
Sbjct: 336 --------------VSGKPVPT----------VNWMKNGD-------------------- 351
Query: 533 FYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
+ ++ + IL + + + G Y+C A N+ G+ + A L
Sbjct: 352 -----VVIPSDYFQIVGGSNLRILGV---VKSDEGFYQCVAENEAGNAQSSAQLI 398
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 6e-35
Identities = 76/489 (15%), Positives = 133/489 (27%), Gaps = 139/489 (28%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ-TMTVEFLYNGKPIEASHRIRTVHAFG 259
R F SE G D+ +++ +G + R
Sbjct: 20 RSLHFVSEPSDAV-TMRGGNVLLNC--SAESDRGVPVIKWKKDGLILALGMDDRKQQLPN 76
Query: 260 ----MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEG 315
+ + D G+Y C A+ + IS + + P +F S +S+
Sbjct: 77 GSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAG---PLRFLSQTESIT- 132
Query: 316 LKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFH---KNRVKMVSDFGFVVMDIAYVQS 371
GD+ +C V DP + W N + + +RV ++ I+ +Q
Sbjct: 133 AFMGDTVLLKC---EVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQ---ISRLQP 186
Query: 372 HDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAA 431
DSG Y C A N A +R +
Sbjct: 187 GDSGVYRCSARNPASTRTGNE--------------------AEVR----------ILSDP 216
Query: 432 PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAP 491
+ F+ + S+V + EG+ A E C P
Sbjct: 217 GLHRQLYFLQRPSNVIAI-EGKDAVLE------------C--------------CVSGYP 249
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF 551
T L+ + + + +
Sbjct: 250 PPS----------FTWLRGEEV-------------------------IQLRSKKYSLLGG 274
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQ------------ 599
L I +++SG Y C T K + A L + +
Sbjct: 275 S--NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEF 332
Query: 600 --------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG 651
+P V W NG + ++ + IL + + + G Y+C A N+ G
Sbjct: 333 ECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGV---VKSDEGFYQCVAENEAG 389
Query: 652 SDVTKASLK 660
+ + A L
Sbjct: 390 NAQSSAQLI 398
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 7e-30
Identities = 55/329 (16%), Positives = 99/329 (30%), Gaps = 65/329 (19%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF 551
+ F+++ SD G + V++W +G L G R
Sbjct: 18 GRRSLHFVSEPSDAV-TMRGGNVLLNCSAES-DRGVPVIKWKKDGLILALGMDDRKQQLP 75
Query: 552 G----IVILDILYCYEENSGVYECRATNKYGSDVT--KASLKCVSKTNLILESQ------ 599
I + ++ + G+Y+C A+ + A + + +++
Sbjct: 76 NGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFM 135
Query: 600 --------------LPEVEWFYNGKKL---PHGHRYRTFHDFGIVILDILYCYEENSGVY 642
+P + W N + L P R + I + +SGVY
Sbjct: 136 GDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQ---PGDSGVY 192
Query: 643 ECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLS 702
C A N + ++ + + S D R F ++
Sbjct: 193 RCSARNPASTRTG-------NEAEVRILS-------------DPGLHRQLYFLQRPSNVI 232
Query: 703 NLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIE 760
EG+ A E S G + +L + I+ + ++ L I +
Sbjct: 233 -AIEGKDAVLECCVS----GYPPPSFTWLRGEEVIQLRSKKYSLLGGS--NLLISNVTDD 285
Query: 761 DTGVYTCRATNKWGQAEISVNLECVVWSP 789
D+G YTC T K S L V P
Sbjct: 286 DSGTYTCVVTYKNENISASAELT--VLVP 312
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 88.4 bits (219), Expect = 9e-19
Identities = 45/236 (19%), Positives = 68/236 (28%), Gaps = 52/236 (22%)
Query: 59 PEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTT 118
+ F+ E + LE V P W+ + ++L S+ +
Sbjct: 215 DPGLHRQLYFLQRPSNV-IAIEGKDAVLECCV--SGYPPPSFTWLRGEEVIQLRSKKYSL 271
Query: 119 ADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLE 178
L ++ V D D G YTC S +
Sbjct: 272 LGGS--NLLISNVTDDDSGTYTCVVTYKNENISASAELT--------------------- 308
Query: 179 KIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE 238
+ PP F + +L E FE + G TV
Sbjct: 309 -VLV-------------------PPWFLNHPSNLY-AYESMDIEFECA--VSGKPVPTVN 345
Query: 239 FLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
++ NG + S + + L ILG D G Y C A N+ G A+ S L
Sbjct: 346 WMKNGDVVIPSDYFQ-IVGGSN--LRILGVVKSDEGFYQCVAENEAGNAQSSAQLI 398
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 1e-14
Identities = 37/231 (16%), Positives = 75/231 (32%), Gaps = 40/231 (17%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFG----IVILDILY 633
G +V L C ++++ +P ++W +G L G R I +
Sbjct: 36 GGNVL---LNCSAESDR----GVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSR 88
Query: 634 CYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQ 693
++ + G+Y+C A+ + + K +++ P +
Sbjct: 89 HHKPDEGLYQCEASLGDSGSIISRTAK------VMVAG-------------------PLR 123
Query: 694 FTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLE 753
F S+ + ++ G+ + +GD T+ + N + + V L+
Sbjct: 124 FLSQTESIT-AFMGDTVLLKCE--VIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQ 180
Query: 754 ILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKLVYSLFEVPQP 804
I + D+GVY C A N E + S + P
Sbjct: 181 ISRLQPGDSGVYRCSARNPASTRT-GNEAEVRILSDPGLHRQLYFLQRPSN 230
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 2e-36
Identities = 84/488 (17%), Positives = 135/488 (27%), Gaps = 141/488 (28%)
Query: 202 PPQFTSEFQHLSNL--SEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA 257
P F + H S E A + T + NG ++ R
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRAR----ANPPATYRWKMNGTELKMGPDSRYRLV 59
Query: 258 FGMVVLEILGTKIEDTGVYTCRATNKWGQA---EISVNLECVDKSKGQPPKFTSHIKSLE 314
G +V+ K +D G Y C ATN G E S+ G +F++ +
Sbjct: 60 AGDLVI-SNPVKAKDAGSYQCVATNARGTVVSREASLRF-------GFLQEFSAEERDPV 111
Query: 315 GLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIF--HKNRVKMVSDFGFVVMDIAYVQSH 372
+ +G F C+ P + P L W N P F R + G + IA ++
Sbjct: 112 KITEGWGVMFTCSP-PPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG--NLYIAKTEAS 168
Query: 373 DSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAP 432
D G Y C A + + Q +A
Sbjct: 169 DLGNYSCFATSHIDFITKSVF--------------------------SKFSQLSLAAEDA 202
Query: 433 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPV 492
AP + T GQ E C A PV
Sbjct: 203 RQYAPSIKAKFPADTYALTGQMVTLE------------C--------------FAFGNPV 236
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
+ ++W +
Sbjct: 237 PQ-----------------------------------IKWRKLDGSQT---SKWLSSEPL 258
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLI--LESQL---------- 600
+ I ++ E+ G YEC A N G D + + ++ + + +
Sbjct: 259 LHIQNVD---FEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWS 315
Query: 601 --------PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652
P V W +G+ L +R + ++ E+SG+Y+C A NK+G+
Sbjct: 316 CVASGKPRPAVRWLRDGQPLASQNRIEVSGG-ELRFSKLV---LEDSGMYQCVAENKHGT 371
Query: 653 DVTKASLK 660
A L
Sbjct: 372 VYASAELT 379
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 2e-31
Identities = 60/335 (17%), Positives = 103/335 (30%), Gaps = 61/335 (18%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL---GSRFKTTADFG 122
F + K+ E + P + P L W+ N P + G RF + G
Sbjct: 101 QEFSAEERDPVKITEGWGVMFTCSP-PPHYPALSYRWLLNEFPNFIPADGRRFVSQTT-G 158
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQD 182
L + + D G Y+C A + S
Sbjct: 159 --NLYIAKTEASDLGNYSCFATSHIDFITKSVF--------------------------- 189
Query: 183 LEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFL 240
S Q + + P ++F + G++ E A G+ +++
Sbjct: 190 ---SKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAF----GNPVPQIKWR 242
Query: 241 YNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSK 300
+ + + L I ED G Y C A N G+ +
Sbjct: 243 KLDGS-----QTSKWLSSEPL-LHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA--- 293
Query: 301 GQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG 360
P + I E G + C + P V W +G+P+ +NR+++
Sbjct: 294 --QPDWLDVITDTE-ADIGSDLRWSCVAS--GKPRPAVRWLRDGQPLASQNRIEVSGG-- 346
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + + DSG Y C A NK+G + A +
Sbjct: 347 --ELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 379
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 4e-29
Identities = 89/531 (16%), Positives = 144/531 (27%), Gaps = 165/531 (31%)
Query: 66 PVFIVPLKP--EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
PVF + + + L + +P W NG L++G + G
Sbjct: 5 PVFEEQPAHTLFPEGSAEEKVTLTCRARA--NPPATYRWKMNGTELKMGPDSRYRLVAGD 62
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
+ + V +D G Y C A N G S + SL
Sbjct: 63 LVI-SNPVKAKDAGSYQCVATNARGTVV-------SREASLRF----------------- 97
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG 243
G +F++E + ++EG F S P ++ +L N
Sbjct: 98 ----------------GFLQEFSAEERDPVKITEGWGVMFTCS-PPPHYPALSYRWLLNE 140
Query: 244 KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE------CVD 297
P R + L I T+ D G Y+C AT+ SV + +
Sbjct: 141 FPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAE 200
Query: 298 KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKMV 356
++ P + + G EC +P +++W K +
Sbjct: 201 DARQYAPSIKAKFPADTYALTGQMVTLEC---FAFGNPVPQIKWRKLDGSQ----TSKWL 253
Query: 357 SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIR 416
S ++ I V D G Y C A N G D + I
Sbjct: 254 SSEP--LLHIQNVDFEDEGTYECEAENIKGRDTYQGRII--------------------- 290
Query: 417 ELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSN 476
+ P ++ I+D G + C
Sbjct: 291 ----------------IHAQPDWLDVITDTE-ADIGSDLRWS------------CV---- 317
Query: 477 FFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNG 536
A P P V L++GQ
Sbjct: 318 ----------ASGKPR---PA-------VRWLRDGQP----------------------- 334
Query: 537 KKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L +R + ++ E+SG+Y+C A NK+G+ A L
Sbjct: 335 --LASQNRIEVSGG-ELRFSKLV---LEDSGMYQCVAENKHGTVYASAELT 379
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 1e-28
Identities = 57/329 (17%), Positives = 91/329 (27%), Gaps = 83/329 (25%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLP---HGHRYRTF 548
+F + D ++ EG F P P L W N G R+ +
Sbjct: 97 FGFLQEFSAEERDPVKITEGWGVMFTCSP-PPHYPALSYRWLLNEFPNFIPADGRRFVSQ 155
Query: 549 HDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKT---------------- 592
+ I + G Y C AT+ K +
Sbjct: 156 TTGNLYIAKTE---ASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAK 212
Query: 593 -----------NLILE-----SQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYE 636
+ LE + +P+++W + + I ++
Sbjct: 213 FPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQT---SKWLSSEPLLHIQNVD---F 266
Query: 637 ENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTS 696
E+ G YEC A N G D + + I P +
Sbjct: 267 EDEGTYECEAENIKGRDTYQGRII-------IHA--------------------QPDWLD 299
Query: 697 EFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEI 754
G + AS G V +L +G+P+ + +RI L
Sbjct: 300 VITDTE-ADIGSDLRWSCVAS----GKPRPAVRWLRDGQPLASQNRIEVSGG----ELRF 350
Query: 755 LGTKIEDTGVYTCRATNKWGQAEISVNLE 783
+ED+G+Y C A NK G S L
Sbjct: 351 SKLVLEDSGMYQCVAENKHGTVYASAELT 379
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 98.4 bits (245), Expect = 4e-22
Identities = 53/328 (16%), Positives = 95/328 (28%), Gaps = 66/328 (20%)
Query: 493 AEAPKFITQISDVTQLK--EGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR-TFH 549
+ P F Q + + + R +P W NG +L G R
Sbjct: 2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARA--NPPATYRWKMNGTELKMGPDSRYRLV 59
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVT-KASLKCVSKTNLILESQ--------- 599
+VI + + +++G Y+C ATN G+ V+ +ASL+ E +
Sbjct: 60 AGDLVISNPVK--AKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGW 117
Query: 600 -------------LPEVEWFYNGKKLP---HGHRYRTFHDFGIVILDILYCYEENSGVYE 643
W N G R+ + + I + G Y
Sbjct: 118 GVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTE---ASDLGNYS 174
Query: 644 CRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSN 703
C AT+ + L L + P ++F +
Sbjct: 175 CFATSHIDFITKSVF---SKFSQLSL-------------AAEDARQYAPSIKAKFPADTY 218
Query: 704 LSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIED 761
G++ E A G+ +++ + + +L I ED
Sbjct: 219 ALTGQMVTLECFAF----GNPVPQIKWRKLDGS-----QTSKWLSSEP-LLHIQNVDFED 268
Query: 762 TGVYTCRATNKWGQAEISVNLECVVWSP 789
G Y C A N G+ + ++ +
Sbjct: 269 EGTYECEAENIKGRDTYQGRI--IIHAQ 294
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 2e-14
Identities = 41/232 (17%), Positives = 60/232 (25%), Gaps = 60/232 (25%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV 124
P + Q + LE +P +I+W
Sbjct: 206 APSIKAKFPADTYALTGQMVTLECFAF--GNPVPQIKWRKLDGSQTSKWLSSEP------ 257
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLE 184
L + V D+G Y C A N+ G I I
Sbjct: 258 LLHIQNVDFEDEGTYECEAENIKGRDTYQGRI----------------------IIHA-- 293
Query: 185 ESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEFLYN 242
P + G + AS G V +L +
Sbjct: 294 -----------------QPDWLDVITDTE-ADIGSDLRWSCVAS----GKPRPAVRWLRD 331
Query: 243 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
G+P+ + +RI L +ED+G+Y C A NK G S L
Sbjct: 332 GQPLASQNRIEVSGG----ELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 379
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
A+P ++ + + + L P + W+ +G+PL +R + +
Sbjct: 293 AQPDWLDVIT-DTEADIGSDLRWSCVAS--GKPRPAVRWLRDGQPLASQNRIEVSGG--- 346
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L +++ D G+Y C A N G + S +
Sbjct: 347 -ELRFSKLVLEDSGMYQCVAENKHGTVYASAEL 378
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 138 bits (348), Expect = 5e-36
Identities = 64/345 (18%), Positives = 103/345 (29%), Gaps = 47/345 (13%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVT 125
P + + G + L P P W+ +G L R
Sbjct: 8 PGPEPGQQEQLVFGSGDAVELSCPP-PGGGPMGPTVWVKDGTGLVPSERVLVGPQ----R 62
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEE 185
L + D G Y+CR C + + E+G ++ +D
Sbjct: 63 LQVLNASHEDSGAYSCRQRLTQRVL-------CHFSVRVTDAPSSGDDEDGEDEAEDT-- 113
Query: 186 SLRRQPAGVPDSEDGRPPQFTSEFQ---HLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 242
D P +T + L + F G+ T ++ +L N
Sbjct: 114 -----------GVDTGAPYWTRPERMDKKLLAVPAANTVRFRCP--AAGNPTPSISWLKN 160
Query: 243 GKPIEASHRI-RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKG 301
G+ HRI L + D G YTC NK+G + L+ +++S
Sbjct: 161 GREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPH 220
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH----NGKPI---------F 348
+P + G F C +D + ++W NG +
Sbjct: 221 RPILQAGLPANQT-AVLGSDVEFHC--KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTV 277
Query: 349 HKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRAT 393
K +D V+ + V D+GEY C A N G A
Sbjct: 278 LKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAW 322
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 1e-29
Identities = 56/360 (15%), Positives = 83/360 (23%), Gaps = 90/360 (25%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF 551
AE P + G + P P W +G L R
Sbjct: 4 AAEVPGPEPGQQEQLVFGSGDAVELSCPP-PGGGPMGPTVWVKDGTGLVPSERVLVGPQ- 61
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL----------- 600
L +L E+SG Y CR + + ++ E
Sbjct: 62 ---RLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTG 118
Query: 601 ----------------------------------PEVEWFYNGKKLPHGHR-YRTFHDFG 625
P + W NG++ HR
Sbjct: 119 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQ 178
Query: 626 IVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPD 685
L + + G Y C NK+GS +L V +
Sbjct: 179 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD----------------------VLE 216
Query: 686 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTV----EFLYNGKPIEASHRI 741
RP + + G F D + NG +
Sbjct: 217 RSPHRPILQAGLPANQT-AVLGSDVEFHCK--VYSDAQPHIQWLKHVEVNGSKVGPDGTP 273
Query: 742 RT---------VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQT 792
+ VL + ED G YTC A N G + S L V+ + +
Sbjct: 274 YVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV-VLPAEEEL 332
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 115 bits (288), Expect = 4e-28
Identities = 62/419 (14%), Positives = 105/419 (25%), Gaps = 110/419 (26%)
Query: 200 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
P Q G+ P G ++ +G + S R+
Sbjct: 5 AEVPGPEPGQQEQLVFGSGDAVELSCP-PPGGGPMGPTVWVKDGTGLVPSERVLVGPQ-- 61
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQ----------------P 303
L++L ED+G Y+CR S G
Sbjct: 62 --RLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGA 119
Query: 304 PKFTSHI---KSLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKMVS-D 358
P +T K L + ++ F C P +P + W NG+ ++R+ +
Sbjct: 120 PYWTRPERMDKKLLAVPAANTVRFRC---PAAGNPTPSISWLKNGREFRGEHRIGGIKLR 176
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIREL 418
+ + V D G Y C NK+G T+ V
Sbjct: 177 HQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD------V---------------- 214
Query: 419 ENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFF 478
++ T G F C+
Sbjct: 215 ----------LERSPHRPILQAGLPANQT-AVLGSDVEFH------------CK------ 245
Query: 479 PSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKK 538
+ + LK + +++ P P + V
Sbjct: 246 --------VYSDAQPH----------IQWLKHVEVNG--SKVGPDGTPYVTV-------- 277
Query: 539 LPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILE 597
L T + +L + E++G Y C A N G A L + ++E
Sbjct: 278 LKTAGANTTDKELE--VLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELVE 334
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 92.0 bits (228), Expect = 3e-20
Identities = 57/412 (13%), Positives = 97/412 (23%), Gaps = 122/412 (29%)
Query: 300 KGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDF 359
+ P + GD+ C P W +G + RV +
Sbjct: 4 AAEVPGPEPGQQEQLVFGSGDAVELSCPPPGGG-PMGPTVWVKDGTGLVPSERVLVGPQ- 61
Query: 360 GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELE 419
+ + DSG Y CR + +
Sbjct: 62 ---RLQVLNASHEDSGAYSCRQRLTQRVLCHFSVR----------------VTDAPSSGD 102
Query: 420 NAQGQQPVAQAAPVAEAPKFITQISDVTQL---KEGQSAHFEARLTPVTDPDLVCELFSN 476
+ G+ AP + +L + F C
Sbjct: 103 DEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFR------------CP---- 146
Query: 477 FFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNG 536
A P P ++ LK G+ E R
Sbjct: 147 ----------AAGNP---TP-------SISWLKNGREFRGEHR----------------- 169
Query: 537 KKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLIL 596
G + +V+ ++ + G Y C NK+GS +L + ++
Sbjct: 170 ----IGGIKLRHQQWSLVMESVV---PSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRP 222
Query: 597 ESQL-------------------------PEVEWF----YNGKKLPHGHRYRT------- 620
Q P ++W NG K+
Sbjct: 223 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAG 282
Query: 621 --FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILE 670
D + +L + E++G Y C A N G A L + ++E
Sbjct: 283 ANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELVE 334
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334 | Back alignment and structure |
|---|
Score = 83.9 bits (207), Expect = 1e-17
Identities = 44/272 (16%), Positives = 69/272 (25%), Gaps = 63/272 (23%)
Query: 53 QRQPSGPEETFAKPVFIVPLKPEFKL---GEAQPLHLEAQVEPKNDPNLKIEWIFNGKPL 109
+ + P + P + + KL A + +P I W+ NG+
Sbjct: 107 EDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAA--GNPTPSISWLKNGREF 164
Query: 110 ELGSRFK-TTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERT 168
R +L + V D+G YTC N G I + ++ER+
Sbjct: 165 RGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGS------IRQTYTLDVLERS 218
Query: 169 QHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLI 228
H RP + + G F
Sbjct: 219 PH------------------------------RPILQAGLPANQT-AVLGSDVEFHCK-- 245
Query: 229 PVGDQTMTV----EFLYNGKPIEASHRIRT---------VHAFGMVVLEILGTKIEDTGV 275
D + NG + + VL + ED G
Sbjct: 246 VYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGE 305
Query: 276 YTCRATNKWGQAEISVNLECVDKSKGQPPKFT 307
YTC A N G + S L + +
Sbjct: 306 YTCLAGNSIGFSHHSAWLVVLP-----AEEEL 332
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 9e-36
Identities = 57/333 (17%), Positives = 95/333 (28%), Gaps = 52/333 (15%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
P FI K + Q DP ++ W GK + D
Sbjct: 5 EPPRFIKEPKDQ-IGVSGGVASFVCQAT--GDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 124 V-TLDLTEVYD-RDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQ 181
L + + RD+ +Y C A N GE +
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVL---------------------- 99
Query: 182 DLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY 241
D P Q L + A + G+ + +
Sbjct: 100 ------------REDQLPSGFPNIDMGPQ-LKVVERTRTATMLCA--ASGNPDPEITWFK 144
Query: 242 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKG 301
+ P++ S + L+I ++ D G Y C ATN G S + +
Sbjct: 145 DFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRY-SSPANLYVRVQN 203
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
P+F+ S E + G + + C V P V+W + + ++ + + +
Sbjct: 204 VAPRFSILPMSHE-IMPGGNVNITCV--AVGSPMPYVKWMQGAEDLTPEDDMPVGRNV-- 258
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ DS Y C A + G A I
Sbjct: 259 ----LELTDVKDSANYTCVAMSSLGVIEAVAQI 287
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 7e-35
Identities = 65/323 (20%), Positives = 98/323 (30%), Gaps = 68/323 (21%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYR-TFH 549
E P+FI + D G A F + T DP V W GKK+ F
Sbjct: 3 GEEPPRFIKEPKDQI-GVSGGVASFVCQ---ATGDPKPRVTWNKKGKKVNSQRFETIEFD 58
Query: 550 DFGIVILDIL-YCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL-------- 600
+ +L I + VYEC A N G A L V + + +
Sbjct: 59 ESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLT-VLREDQLPSGFPNIDMGPQL 117
Query: 601 --------------------PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSG 640
PE+ WF + + L I E + G
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQG 177
Query: 641 VYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQH 700
YEC ATN G + S NL + P+F+
Sbjct: 178 KYECVATNSAGVRYS-------SPANLYVR----------------VQNVAPRFSILPMS 214
Query: 701 LSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIE 760
+ G + + VG V+++ + + + G VLE+ T ++
Sbjct: 215 HE-IMPGGNVNITC--VAVGSPMPYVKWMQGAEDLTPEDDMP----VGRNVLEL--TDVK 265
Query: 761 DTGVYTCRATNKWGQAEISVNLE 783
D+ YTC A + G E +
Sbjct: 266 DSANYTCVAMSSLGVIEAVAQIT 288
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 4e-29
Identities = 57/389 (14%), Positives = 102/389 (26%), Gaps = 111/389 (28%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
PP+F E + G +A F GD V + GK + +
Sbjct: 6 PPRFIKEPKDQI-GVSGGVASFVCQA--TGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62
Query: 262 -VLEILGTKI-EDTGVYTCRATNKWGQAEISVNL--ECVDKSKGQPPKFTSHIKSLEGLK 317
VL I + D VY C A N G+ + L D+ P + ++
Sbjct: 63 AVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKV-VE 121
Query: 318 DGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEY 377
+A C + +P+ ++ WF + P+ + + I + D G+Y
Sbjct: 122 RTRTATMLCAASG--NPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKY 179
Query: 378 VCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAP 437
C A N G ++ + +R AP
Sbjct: 180 ECVATNSAGVRYSS------------------PANLYVRVQ---------------NVAP 206
Query: 438 KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPK 497
+F + G + + C VA +P+
Sbjct: 207 RFSILPMSHE-IMPGGNVNIT------------C--------------VAVGSPMPY--- 236
Query: 498 FITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILD 557
V ++ + L + + D
Sbjct: 237 -------VKWMQGAED-------------------------LTPEDDMP-VGRNVLELTD 263
Query: 558 ILYCYEENSGVYECRATNKYGSDVTKASL 586
+ ++S Y C A + G A +
Sbjct: 264 V-----KDSANYTCVAMSSLGVIEAVAQI 287
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304 | Back alignment and structure |
|---|
Score = 89.5 bits (222), Expect = 1e-19
Identities = 37/252 (14%), Positives = 73/252 (28%), Gaps = 54/252 (21%)
Query: 57 SGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK 116
+ P + + + + + + P+ +I W + P++ +
Sbjct: 100 REDQLPSGFPNIDMGPQLK-VVERTRTATMLCAASGN--PDPEITWFKDFLPVDPSASNG 156
Query: 117 TTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEG 176
L + + DQG Y C A N AG ++S
Sbjct: 157 RIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSP---------------------- 194
Query: 177 LEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMT 236
A + P+F+ + G + + VG
Sbjct: 195 ---------------ANLYVRVQNVAPRFSILPMSHE-IMPGGNVNITC--VAVGSPMPY 236
Query: 237 VEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 296
V+++ + + + G VLE+ T ++D+ YTC A + G E +
Sbjct: 237 VKWMQGAEDLTPEDDMP----VGRNVLEL--TDVKDSANYTCVAMSSLGVIEAVAQITVK 290
Query: 297 DKSKGQPPKFTS 308
PK +
Sbjct: 291 S-----LPKAGT 297
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 1e-35
Identities = 65/553 (11%), Positives = 141/553 (25%), Gaps = 90/553 (16%)
Query: 271 EDTGVYTC----RATNKWGQAEISVNLECVDKSKG-------QPPKFTSHIKSLEGLKDG 319
+D V C N + S + + Q ++E +
Sbjct: 5 QDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVE-VDVS 63
Query: 320 DSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVC 379
S + + + W + + + + ++ I + +GEY+
Sbjct: 64 ASITLQVLVD--APGNISCLWVFKHSSLNCQPHFDLQNRGVVSMV-ILKMTETQAGEYLL 120
Query: 380 RAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAP-- 437
++ T+ + L R++EN ++++ P
Sbjct: 121 FIQSEATNYTILFTVS------IRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWV 174
Query: 438 KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPK 497
+Q + E L + D+ C N + + + +
Sbjct: 175 LCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCA-RN----ELGRECTRLFTIDLNQT 229
Query: 498 FITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR------TFHDF 551
T + + LK G+ + V + + W K L G+ +
Sbjct: 230 PQTTLPQLF-LKVGEPLWIRCKAVHV-NHGFGLTWELENKALEEGNYFEMSTYSTNRTMI 287
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVT-----KASLKCVSKTNLILESQ------- 599
I+ + ++G Y C ++ K + + + Q
Sbjct: 288 RILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFS 347
Query: 600 -------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652
W ++ K P + + + I + G Y A N
Sbjct: 348 VRFKAYPQIRCTWTFSRKSFPCEQKGLD-NGYSISKFCNH---KHQPGEYIFHAENDDAQ 403
Query: 653 DVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFT--SEFQHLSNLSEGEIA 710
+L K ++ E+ + G P P +T N +E
Sbjct: 404 FTKMFTLNIRRKPQVLAEASASQASCFSDGYP------LPSWTWKKCSDKSPNCTE---- 453
Query: 711 HFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 770
I G G+ + + ++ + C A
Sbjct: 454 -----EITEGVWNRKANRKVFGQWV--------------SSSTLNMSEAIKGFLVKCCAY 494
Query: 771 NKWGQAEISVNLE 783
N G + ++ L
Sbjct: 495 NSLGTSCETILLN 507
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 4e-25
Identities = 52/364 (14%), Positives = 96/364 (26%), Gaps = 74/364 (20%)
Query: 39 EKVQEVEHALAGKYQRQPSGPEETFAK------PVFIVPLKPEFKLGEAQPLHLEAQVEP 92
K + + Y PE+ E + + L+ V+
Sbjct: 17 HKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSA--SITLQVLVD- 73
Query: 93 KNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFT 152
N+ W+F L F + G V++ + ++ + G Y + A
Sbjct: 74 -APGNISCLWVFKHSSLNCQPHFDLQ-NRGVVSMVILKMTETQAGEYLLFIQSEATNYTI 131
Query: 153 STTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHL 212
T+ R + + E +++L VP P
Sbjct: 132 LFTVSIRNTLLYTLRRPYFRKMEN-------QDALVCISESVP------EP--------- 169
Query: 213 SNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIED 272
VE++ E+ +V E
Sbjct: 170 -----------------------IVEWVLCDSQGESCKEESP----AVVKKEEKVLHELF 202
Query: 273 TGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVN 332
C A N+ G+ + ++ Q P+ T LK G+ C VN
Sbjct: 203 GTDIRCCARNELGRECTRLFTIDLN----QTPQTTL---PQLFLKVGEPLWIRCKAVHVN 255
Query: 333 DPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD------IAYVQSHDSGEYVCRAWNKYG 386
+ W K + N +M + M ++ V +D+G Y C +
Sbjct: 256 -HGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPS 314
Query: 387 EDFT 390
+
Sbjct: 315 QSAL 318
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 104 bits (259), Expect = 2e-23
Identities = 40/349 (11%), Positives = 75/349 (21%), Gaps = 86/349 (24%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV 124
L P+ L +PL + + + + W K LE G+ F+ +
Sbjct: 227 NQTPQTTL-PQLFLKVGEPLWIRCKA-VHVNHGFGLTWELENKALEEGNYFEMSTYSTNR 284
Query: 125 ------TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLE 178
++ V D G YTC + ++ T +
Sbjct: 285 TMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVE--------------------- 323
Query: 179 KIQDLEESLRRQPAGVPDSEDGRPPQFT-SEFQHLSNLSEGEIAHFEASLIPVGDQTMTV 237
+ + + E F +
Sbjct: 324 -----------------------KGFINATNSSEDYEIDQYEEFCFSVR--FKAYPQIRC 358
Query: 238 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD 297
+ ++ K + + G Y A N Q L +
Sbjct: 359 TWTFSRKSFPCEQKGLD----NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN-IR 413
Query: 298 KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGK---------PIF 348
+ P+ + ++ C P W
Sbjct: 414 ----RKPQVLAE---------ASASQASCFSD--GYPLPSWTWKKCSDKSPNCTEEITEG 458
Query: 349 HKNRVKMVSDFGFVVMD--IAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
NR FG V + ++ C A+N G +
Sbjct: 459 VWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLN 507
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 102 bits (254), Expect = 9e-23
Identities = 46/335 (13%), Positives = 84/335 (25%), Gaps = 70/335 (20%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVT 125
+ +P F+ E Q L E + P +EW+ E V
Sbjct: 140 TLLYTLRRPYFRKMENQDA-LVCISE--SVPEPIVEWVLCDSQGESCKEESP----AVVK 192
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEE 185
+ +++ C A N G T
Sbjct: 193 KEEKVLHELFGTDIRCCARNELGRECTRLFTI---------------------------- 224
Query: 186 SLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKP 245
+ + PQ T L GE + + + K
Sbjct: 225 ------------DLNQTPQTTLPQLFLK---VGEPLWIRCK-AVHVNHGFGLTWELENKA 268
Query: 246 IEASHRIR------TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKS 299
+E + ++ + DTG YTC ++ Q S + V+K
Sbjct: 269 LEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKG 325
Query: 300 KGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDF 359
+ + + + F P+++ W + K K + +
Sbjct: 326 FINATNSSEDYEIDQ----YEEFCFSVRFKA--YPQIRCTWTFSRKSF--PCEQKGLDNG 377
Query: 360 GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ H GEY+ A N + T+
Sbjct: 378 Y--SISKFCNHKHQPGEYIFHAENDDAQFTKMFTL 410
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 91.3 bits (226), Expect = 2e-19
Identities = 29/266 (10%), Positives = 68/266 (25%), Gaps = 48/266 (18%)
Query: 130 EVYDRDQGIYTCRAWNLAGE---TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEES 186
E ++D + C N S++ ++
Sbjct: 1 ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSES------------------------ 36
Query: 187 LRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI 246
P + + + E + + + ++ ++ +++ +
Sbjct: 37 ----PEDLGCALRPQSSGTVYEAAAVE-VDVSASITLQ--VLVDAPGNISCLWVFKHSSL 89
Query: 247 EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKF 306
+ G+V + IL G Y ++ I + + +
Sbjct: 90 NCQPHFDLQN-RGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRN-----TLLY 143
Query: 307 TSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDI 366
T +++ D+ C + PE VEW V +
Sbjct: 144 TLRRPYFRKMENQDA--LVC--ISESVPEPIVEWVLCDSQGESCKE----ESPAVVKKEE 195
Query: 367 AYVQSHDSGEYVCRAWNKYGEDFTRA 392
+ + C A N+ G + TR
Sbjct: 196 KVLHELFGTDIRCCARNELGRECTRL 221
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 76.3 bits (187), Expect = 1e-14
Identities = 29/208 (13%), Positives = 53/208 (25%), Gaps = 30/208 (14%)
Query: 492 VAEAPKF-ITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD 550
+ E T S+ ++ + + F R P + W ++ K P + +
Sbjct: 321 IVEKGFINATNSSEDYEIDQYEEFCFSVRFKA--YPQIRCTWTFSRKSFPCEQKGLD-NG 377
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQ----------- 599
+ I + G Y A N +L K ++ E+
Sbjct: 378 YSISKFCNH---KHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQASCFSDGY 434
Query: 600 -LPEVEWFYNGKKLPHGHRY-----------RTFHDFGIVILDILYCYEENSGVYECRAT 647
LP W K P+ R + + + +C A
Sbjct: 435 PLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAY 494
Query: 648 NKYGSDVTKASLKCVSKTNLILESQLPE 675
N G+ L I +
Sbjct: 495 NSLGTSCETILLNSPGPFPFIQDGGTKH 522
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 69.0 bits (168), Expect = 3e-12
Identities = 27/252 (10%), Positives = 59/252 (23%), Gaps = 66/252 (26%)
Query: 564 ENSGVYECRATNKYGSDVT---------------------KASLKCVSKTNLILESQLPE 602
S Y + + +L+ +
Sbjct: 25 GKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLVDAP-----GNIS 79
Query: 603 VEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 662
W + L + + G+V + IL E +G Y ++ + ++
Sbjct: 80 CLWVFKHSSLNCQPHFDLQNR-GVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVS-- 136
Query: 663 SKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPV--G 720
+ + +T + E + A L+ +
Sbjct: 137 --------------------IRN-----TLLYTLRRPYFR-KMENQDA-----LVCISES 165
Query: 721 DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
VE++ E+ +V E C A N+ G+ +
Sbjct: 166 VPEPIVEWVLCDSQGESCKEESP----AVVKKEEKVLHELFGTDIRCCARNELGRECTRL 221
Query: 781 NLECVVWSPSQT 792
+ +P T
Sbjct: 222 FTIDLNQTPQTT 233
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 1e-07
Identities = 13/96 (13%), Positives = 27/96 (28%), Gaps = 7/96 (7%)
Query: 63 FAKPVFIVPLKPE-FKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
K E +++ + + V K P ++ W F+ K +
Sbjct: 322 VEKGFINATNSSEDYEIDQYEEFCFS--VRFKAYPQIRCTWTFSRKSFPCEQKGLD---- 375
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
++ + G Y A N + T+
Sbjct: 376 NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN 411
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 1e-35
Identities = 60/322 (18%), Positives = 106/322 (32%), Gaps = 63/322 (19%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
+ +S V L G+S F + +P+ + + G+K+ R +
Sbjct: 2 MALLQVTISLSKVE-LSVGESKFFTCT--AIGEPESIDWYNPQGEKIISTQRVVVQKEGV 58
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVT-KASLKCVSKTNLILESQ------------ 599
L I E++G+Y C+AT+ G L+ K
Sbjct: 59 RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEV 118
Query: 600 --------LPEVEWFYNGKKLP--HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNK 649
P V W Y+ +++ +R+ + + IL+I + + G+Y C +
Sbjct: 119 VCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNIN---KSDEGIYRCEGRVE 175
Query: 650 YGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLS--EG 707
++ + +I+ PP + Q N + G
Sbjct: 176 ARGEIDFRDII------VIVNV-------------------PPAISMP-QKSFNATAERG 209
Query: 708 EIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTC 767
E F G + + NGK IE + + + L + D G Y C
Sbjct: 210 EEMTFSCR--ASGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVC 265
Query: 768 RATNKWGQAEISVNLECVVWSP 789
RATNK G+ E L+ V+
Sbjct: 266 RATNKAGEDEKQAFLQ--VFVQ 285
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 1e-32
Identities = 68/340 (20%), Positives = 108/340 (31%), Gaps = 67/340 (19%)
Query: 62 TFAKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF-NGKPLELGSRFKTTA 119
+ A + L E +GE++ A EP+ I+W G+ + R
Sbjct: 1 SMALLQVTISLSKVELSVGESKFFTCTAIGEPE-----SIDWYNPQGEKIISTQRVVVQK 55
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTST---TIYCSTKESLIERTQHPKGEEG 176
+ L + D GIY C+A + G+T +T IY
Sbjct: 56 EGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY------------------- 96
Query: 177 LEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMT 236
+ F +GE A
Sbjct: 97 ------------------------QKLTFREVVSPQE-FKQGEDAEVVCR--VSSSPAPA 129
Query: 237 VEFLYNGKPIEASHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 295
V +LY+ + + R + A L+IL D G+Y C + ++
Sbjct: 130 VSWLYHNEEVTTISDNRFAMLANN--NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV 187
Query: 296 VDKSKGQPPKFTSHIKSLE-GLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVK 354
+ PP + KS + G+ F C PE + WF NGK I +
Sbjct: 188 IVNV---PPAISMPQKSFNATAERGEEMTFSCR--ASGSPEPAISWFRNGKLIEENEKYI 242
Query: 355 MVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ + + + + D G YVCRA NK GED +A +
Sbjct: 243 LKGSNTELT--VRNIINSDGGPYVCRATNKAGEDEKQAFL 280
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 98.0 bits (244), Expect = 1e-22
Identities = 56/325 (17%), Positives = 94/325 (28%), Gaps = 89/325 (27%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
+ T + +E G+S F CT + +PE + G+ I RV + +
Sbjct: 4 LLQVTISLSKVELSV-GESKFFTCT--AIGEPESIDWYNPQGEKIISTQRVVVQKEGVRS 60
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQ 422
+ I D+G Y C+A + G+ +
Sbjct: 61 RLTIYNANIEDAGIYRCQATDAKGQTQEAT--------------------VVLE------ 94
Query: 423 GQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE------------------------ 458
+ + F +S K+G+ A
Sbjct: 95 ----------IYQKLTFREVVSPQE-FKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS 143
Query: 459 -ARLTPVTDPDLVCELFSNFFPS-------------QGQQPVAQAAPVAEAPKFITQI-- 502
R + + +L N S +G+ + P I+
Sbjct: 144 DNRFAMLANNNLQ---ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQK 200
Query: 503 -SDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYC 561
+ T + G+ F R P+ + WF NGK + +Y L +
Sbjct: 201 SFNAT-AERGEEMTFSCR--ASGSPEPAISWFRNGKLIEENEKYILKGSNTE--LTVRNI 255
Query: 562 YEENSGVYECRATNKYGSDVTKASL 586
+ G Y CRATNK G D +A L
Sbjct: 256 INSDGGPYVCRATNKAGEDEKQAFL 280
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 97.6 bits (243), Expect = 2e-22
Identities = 42/195 (21%), Positives = 70/195 (35%), Gaps = 36/195 (18%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLP--HGHRYRTF 548
+ + F +S K+G+ A R V+ P V W Y+ +++ +R+
Sbjct: 95 IYQKLTFREVVSPQE-FKQGEDAEVVCR---VSSSPAPAVSWLYHNEEVTTISDNRFAML 150
Query: 549 HDFGIVILDILYCYEENSGVYECRATNKY-GSDVTKASLKCVSKTNLILESQ-------- 599
+ + IL+I + + G+Y C + G + + V+ I Q
Sbjct: 151 ANNNLQILNIN---KSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAE 207
Query: 600 ---------------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYEC 644
P + WF NGK + +Y L + + G Y C
Sbjct: 208 RGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVC 265
Query: 645 RATNKYGSDVTKASL 659
RATNK G D +A L
Sbjct: 266 RATNKAGEDEKQAFL 280
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291 | Back alignment and structure |
|---|
Score = 94.5 bits (235), Expect = 2e-21
Identities = 50/252 (19%), Positives = 75/252 (29%), Gaps = 61/252 (24%)
Query: 63 FAKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS--RFKTTA 119
+ K F + P EFK GE + +V + P + W+++ + + S RF A
Sbjct: 96 YQKLTFREVVSPQEFKQGE--DAEVVCRVS--SSPAPAVSWLYHNEEVTTISDNRFAMLA 151
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEK 179
+ L + + D+GIY C A I
Sbjct: 152 NN---NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV----------------- 191
Query: 180 IQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTV 237
PP + Q N + GE F G +
Sbjct: 192 ----------------------PPAISMP-QKSFNATAERGEEMTFSCR--ASGSPEPAI 226
Query: 238 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD 297
+ NGK IE + + + L + D G Y CRATNK G+ E L+
Sbjct: 227 SWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 284
Query: 298 KSKGQPPKFTSH 309
H
Sbjct: 285 -----QHHHHHH 291
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 4e-35
Identities = 72/333 (21%), Positives = 109/333 (32%), Gaps = 57/333 (17%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVT 125
F + + Q + L P + L WIFN P +R + + G
Sbjct: 102 ENFKTRTRSTVSVRRGQGMVLLCGP-PPHSGELSYAWIFNEYPSYQDNRRFVSQETG--N 158
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEE 185
L + +V D G YTC N LI R GE
Sbjct: 159 LYIAKVEKSDVGNYTCVVTNTVTNHKVL-----GPPTPLILRNDGVMGE----------- 202
Query: 186 SLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVE-FLYN 242
P+ +F +G E A G+ T+ +
Sbjct: 203 ---------------YEPKIEVQFPETVPAEKGTTVKLECFAL----GNPVPTILWRRAD 243
Query: 243 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQ 302
GKPI R + +LEI + ED G Y C A N G+ L
Sbjct: 244 GKPIARKARRHKSNG----ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLT-FY----A 294
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P + I + + +S +EC P+ W NG P+ ++R+++
Sbjct: 295 QPNWVQIINDIH-VAMEESVFWECKAN--GRPKPTYRWLKNGDPLLTRDRIQIEQG---- 347
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
++I V D+G Y C A NK+G F+ A +
Sbjct: 348 TLNITIVNLSDAGMYQCVAENKHGVIFSSAELS 380
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 6e-35
Identities = 79/435 (18%), Positives = 135/435 (31%), Gaps = 96/435 (22%)
Query: 200 GRPPQFTSEFQHLS--NLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTV 255
G P F E H+ SE + G+ + + NG ++ R
Sbjct: 3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVK----GNPKPHIRWKLNGTDVDIGMDFRYS 58
Query: 256 HAFGMVVLEILGTKIEDTGVYTCRATNKWGQA---EISVNLECVDKSKGQPPKFTSHIKS 312
G +++ K +D G Y C ATN +G E + F + +S
Sbjct: 59 VVDGSLLI-NNPNKTQDAGTYQCIATNSFGTIVSREAKLQF-------AYLENFKTRTRS 110
Query: 313 LEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSH 372
++ G C P + EL W N P + NR + + G + IA V+
Sbjct: 111 TVSVRRGQGMVLLCGP-PPHSGELSYAWIFNEYPSYQDNRRFVSQETG--NLYIAKVEKS 167
Query: 373 DSGEYVCRAWNKYGED-----FTRATIKCFGKGGVYLDSLQPESLARIRELEN------- 420
D G Y C N T ++ G G Y ++ + + +
Sbjct: 168 DVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLEC 227
Query: 421 -AQGQQPVAQ-------AAPVAEAPKFIT-----QISDVTQLKEGQ----------SAHF 457
A G PV P+A + +I + Q G
Sbjct: 228 FALGN-PVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVA 286
Query: 458 EARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE 517
+ +LT P ++ I+D+ + +S +E
Sbjct: 287 KGQLT-----------------------------FYAQPNWVQIINDIH-VAMEESVFWE 316
Query: 518 ARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNK 576
+ P W NG L R + + I + ++G+Y+C A NK
Sbjct: 317 CK---ANGRPKPTYRWLKNGDPLLTRDRIQ-IEQGTLNITIVN---LSDAGMYQCVAENK 369
Query: 577 YGSDVTKASLKCVSK 591
+G + A L +++
Sbjct: 370 HGVIFSSAELSVIAE 384
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 6e-31
Identities = 56/326 (17%), Positives = 94/326 (28%), Gaps = 77/326 (23%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL-PHGHRYRTFHD 550
A F T+ ++ GQ P +L W +N R+ +
Sbjct: 98 FAYLENFKTRTRSTVSVRRGQGMVLLCGP-PPHSGELSYAWIFNEYPSYQDNRRFVSQET 156
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSD-VTKASLKCVSKTNLILESQ---------- 599
+ I + + + G Y C TN + V + + + ++
Sbjct: 157 GNLYIAKVE---KSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPE 213
Query: 600 --------------------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENS 639
+P + W K R + + I + +E++
Sbjct: 214 TVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNF---QQEDA 270
Query: 640 GVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQ 699
G YEC A N G +V K L P +
Sbjct: 271 GSYECVAENSRGKNVAKGQLT-------FYA--------------------QPNWVQIIN 303
Query: 700 HLSNLSEGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGT 757
+ ++ E + +A+ G T +L NG P+ RI+ L I
Sbjct: 304 DIH-VAMEESVFWECKAN----GRPKPTYRWLKNGDPLLTRDRIQIEQG----TLNITIV 354
Query: 758 KIEDTGVYTCRATNKWGQAEISVNLE 783
+ D G+Y C A NK G S L
Sbjct: 355 NLSDAGMYQCVAENKHGVIFSSAELS 380
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 7e-30
Identities = 69/432 (15%), Positives = 121/432 (28%), Gaps = 118/432 (27%)
Query: 301 GQPPKFTSHIKSLEGLKD--GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD 358
G P F + D C + +P+ + W NG + +
Sbjct: 3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKG--NPKPHIRWKLNGTDVDIGMDFRYSVV 60
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIREL 418
G +++ ++ D+G Y C A N +G +R A+++
Sbjct: 61 DGSLLI-NNPNKTQDAGTYQCIATNSFGTIVSRE--------------------AKLQ-- 97
Query: 419 ENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE-------------------- 458
A F T+ ++ GQ
Sbjct: 98 --------------FAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYP 143
Query: 459 -----ARLTPVTDPDLV-------------CELFSNFFPSQGQQPVAQ------AAPVAE 494
R +L C + + + P
Sbjct: 144 SYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEY 203
Query: 495 APKFITQISDVTQLKEGQSAHFE--ARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
PK Q + ++G + E A PV P + W K R +
Sbjct: 204 EPKIEVQFPETVPAEKGTTVKLECFALGNPV--PT--ILWRRADGKPIARKARRHKSNGI 259
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASL---------------KCVSKTNLILE 597
+ I + +E++G YEC A N G +V K L + ++ E
Sbjct: 260 LEIPNF---QQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWE 316
Query: 598 -----SQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652
P W NG L R + + I + ++G+Y+C A NK+G
Sbjct: 317 CKANGRPKPTYRWLKNGDPLLTRDRIQ-IEQGTLNITIVN---LSDAGMYQCVAENKHGV 372
Query: 653 DVTKASLKCVSK 664
+ A L +++
Sbjct: 373 IFSSAELSVIAE 384
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 8e-26
Identities = 57/320 (17%), Positives = 100/320 (31%), Gaps = 62/320 (19%)
Query: 493 AEAPKFITQISDVTQ--LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR-TFH 549
P F+ + S V E + + +P + W NG + G +R +
Sbjct: 3 GSGPVFVQEPSHVMFPLDSEEKKVKLSCEVKG--NPKPHIRWKLNGTDVDIGMDFRYSVV 60
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVT-KASLKCVSKTNLILESQ--------- 599
D ++I + +++G Y+C ATN +G+ V+ +A L+ N ++
Sbjct: 61 DGSLLINNPNK--TQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQ 118
Query: 600 -------------LPEVEWFYNGKKL-PHGHRYRTFHDFGIVILDILYCYEENSGVYECR 645
W +N R+ + + I + + + G Y C
Sbjct: 119 GMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVE---KSDVGNYTCV 175
Query: 646 ATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLS 705
TN + + P + P + +
Sbjct: 176 VTNTVTNH----------------KVLGPPTPLILRNDGVMGEYEPKIEVQFPETVP-AE 218
Query: 706 EGEIAHFE--ASLIPVGDQTMTVE-FLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDT 762
+G E A G+ T+ +GKPI R + +LEI + ED
Sbjct: 219 KGTTVKLECFAL----GNPVPTILWRRADGKPIARKARRHKSNG----ILEIPNFQQEDA 270
Query: 763 GVYTCRATNKWGQAEISVNL 782
G Y C A N G+ L
Sbjct: 271 GSYECVAENSRGKNVAKGQL 290
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 3e-17
Identities = 42/245 (17%), Positives = 69/245 (28%), Gaps = 59/245 (24%)
Query: 57 SGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF-NGKPLELGSRF 115
+ +P V + + LE +P I W +GKP+ +R
Sbjct: 196 NDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFAL--GNPVPTILWRRADGKPIARKARR 253
Query: 116 KTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEE 175
+ L++ D G Y C A N G+ +
Sbjct: 254 HKSNG----ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLT------------------ 291
Query: 176 GLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQ 233
P + + ++ E + +A+ G
Sbjct: 292 ----FYA-------------------QPNWVQIINDIH-VAMEESVFWECKAN----GRP 323
Query: 234 TMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
T +L NG P+ RI+ L I + D G+Y C A NK G S L
Sbjct: 324 KPTYRWLKNGDPLLTRDRIQIEQG----TLNITIVNLSDAGMYQCVAENKHGVIFSSAEL 379
Query: 294 ECVDK 298
+ +
Sbjct: 380 SVIAE 384
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 1e-34
Identities = 41/202 (20%), Positives = 75/202 (37%), Gaps = 13/202 (6%)
Query: 197 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 256
+ G P E + ++ GE A + VG +++ GK + S + +
Sbjct: 2 AMSGEAPGIRKEMKDVT-TKLGEAAQLSCQI--VGRPLPDIKWYRFGKELIQSRKYKMSS 58
Query: 257 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGL 316
L ++ + ED GVYTC ATN+ G+ E S L + P+F E
Sbjct: 59 DGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLL-LQ----ATPQFHPGYPLKEKY 113
Query: 317 --KDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSH-D 373
G + P + WFH K + + + + + + + + VQ
Sbjct: 114 YGAVGSTLRLHVMYI--GRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTH 171
Query: 374 SGEYVCRAWNKYGEDFTRATIK 395
+G+Y + N +G ++
Sbjct: 172 AGKYKVQLSNVFGTVDAILDVE 193
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 3e-32
Identities = 41/197 (20%), Positives = 76/197 (38%), Gaps = 29/197 (14%)
Query: 489 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRT 547
A EAP ++ DVT K G++A + + P ++W+ GK+L +Y+
Sbjct: 1 GAMSGEAPGIRKEMKDVT-TKLGEAAQLSCQ---IVGRPLPDIKWYRFGKELIQSRKYKM 56
Query: 548 FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK------------------CV 589
D L ++ +E+ GVY C ATN+ G T + L
Sbjct: 57 SSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGA 116
Query: 590 SKTNLILESQ-----LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYC-YEENSGVYE 643
+ L L +P + WF+ K L + + L + + ++G Y+
Sbjct: 117 VGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYK 176
Query: 644 CRATNKYGSDVTKASLK 660
+ +N +G+ ++
Sbjct: 177 VQLSNVFGTVDAILDVE 193
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 3e-27
Identities = 46/238 (19%), Positives = 77/238 (32%), Gaps = 51/238 (21%)
Query: 65 KPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
P +K KLGE L Q+ + P I+W GK L ++K ++D
Sbjct: 7 APGIRKEMKDVTTKLGE--AAQLSCQIVGRPLP--DIKWYRFGKELIQSRKYKMSSDGRT 62
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
TL + D+G+YTC A N GE TS+ + +Q
Sbjct: 63 HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKL----------------------LLQA- 99
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLY 241
PQF + G +G + + +
Sbjct: 100 ------------------TPQFHPGYPLKEKYYGAVGSTLRLHVM--YIGRPVPAMTWFH 139
Query: 242 NGKPIEASHRIRTVHAFGMVVLEILG-TKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
K ++ S I + L + + G Y + +N +G + +++E DK
Sbjct: 140 GQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 8e-27
Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 32/186 (17%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
P+++W+ GK+L +Y+ D L ++ +E+ GVY C ATN+ G T + L
Sbjct: 37 PDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLL 96
Query: 661 CVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIP 718
+ PQF + G
Sbjct: 97 -------LQA--------------------TPQFHPGYPLKEKYYGAVGSTLRLHVM--Y 127
Query: 719 VGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILG-TKIEDTGVYTCRATNKWGQAE 777
+G + + + K ++ S I + L + + G Y + +N +G +
Sbjct: 128 IGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVD 187
Query: 778 ISVNLE 783
+++E
Sbjct: 188 AILDVE 193
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 6e-16
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Query: 686 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 745
+ G P E + ++ GE A + VG +++ GK + S + +
Sbjct: 2 AMSGEAPGIRKEMKDVT-TKLGEAAQLSCQI--VGRPLPDIKWYRFGKELIQSRKYKMSS 58
Query: 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
L ++ + ED GVYTC ATN+ G+ E S L
Sbjct: 59 DGRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLL 96
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 2e-12
Identities = 25/196 (12%), Positives = 54/196 (27%), Gaps = 41/196 (20%)
Query: 430 AAPVAEAPKFITQISDVTQLKEGQSAHFE-----------------------ARLTPVTD 466
A EAP ++ DVT K G++A + +D
Sbjct: 1 GAMSGEAPGIRKEMKDVT-TKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSD 59
Query: 467 PDLVCELFSNFFPS-QGQ----------QPVAQAA-PVAEAPKFI--TQISDVTQLKEGQ 512
+G + + + P+F + + G
Sbjct: 60 GRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGS 119
Query: 513 SAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYC-YEENSGVYEC 571
+ P + WF+ K L + + L + + ++G Y+
Sbjct: 120 TLRLHVMYI--GRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKV 177
Query: 572 RATNKYGSDVTKASLK 587
+ +N +G+ ++
Sbjct: 178 QLSNVFGTVDAILDVE 193
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 3e-09
Identities = 18/97 (18%), Positives = 27/97 (27%), Gaps = 5/97 (5%)
Query: 64 AKPVFI--VPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
A P F PLK ++ L L P + W K L+
Sbjct: 99 ATPQFHPGYPLKEKYYGAVGSTLRLHVMY--IGRPVPAMTWFHGQKLLQNSENITIENTE 156
Query: 122 GFVTLDLTEV-YDRDQGIYTCRAWNLAGETFTSTTIY 157
+ L + V G Y + N+ G +
Sbjct: 157 HYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVE 193
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 4e-34
Identities = 50/432 (11%), Positives = 106/432 (24%), Gaps = 67/432 (15%)
Query: 271 EDTGVYTC----RATNKWGQAEISVNLECVDKSKG-------QPPKFTSHIKSLEGLKDG 319
+D V C N + S + + Q ++E +
Sbjct: 5 QDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVE-VDVS 63
Query: 320 DSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVC 379
S + + + W + + + + G V M I + +GEY+
Sbjct: 64 ASITLQVLVDA--PGNISCLWVFKHSSLNCQPHFDLQNR-GVVSMVILKMTETQAGEYLL 120
Query: 380 RAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKF 439
++ T+ + L R++EN ++++ P
Sbjct: 121 FIQSEATNYTILFTVS------IRNTLLYTLRRPYFRKMENQDALVCISESVPEPI---- 170
Query: 440 IT------QISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVA 493
+ Q + E L + D+ C N G + + +
Sbjct: 171 VEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCA-RN---ELG-RECTRLFTID 225
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR------T 547
T + + LK G+ + V + + W K L G+ +
Sbjct: 226 LNQTPQTTLPQLF-LKVGEPLWIRCKAVHV-NHGFGLTWELENKALEEGNYFEMSTYSTN 283
Query: 548 FHDFGIVILDILYCYEENSGVYECRATNKYGSDVT--------------KASLKCVSKTN 593
I+ + ++G Y C ++ +
Sbjct: 284 RTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEE 343
Query: 594 LILE-----SQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATN 648
W ++ K P + + ++ G Y A N
Sbjct: 344 FCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGY----SISKFCNHKHQPGEYIFHAEN 399
Query: 649 KYGSDVTKASLK 660
+L
Sbjct: 400 DDAQFTKMFTLN 411
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 124 bits (311), Expect = 2e-30
Identities = 60/471 (12%), Positives = 125/471 (26%), Gaps = 73/471 (15%)
Query: 130 EVYDRDQGIYTCRAWNLA--GETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESL 187
E ++D + C N + ++ Y ES
Sbjct: 1 ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSES------------------------ 36
Query: 188 RRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIE 247
P + + + E + + + + ++ +++ +
Sbjct: 37 ---PEDLGCALRPQSSGTVYEAAAVE-VDVSASITLQV--LVDAPGNISCLWVFKHSSLN 90
Query: 248 ASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFT 307
+ G+V + IL G Y ++ I + S +T
Sbjct: 91 CQPHFD-LQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTV-----SIRNTLLYT 144
Query: 308 SHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIA 367
+++ D+ C + PE VEW V +
Sbjct: 145 LRRPYFRKMENQDA--LVC--ISESVPEPIVEWVLCDSQGESCKE----ESPAVVKKEEK 196
Query: 368 YVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPV 427
+ + C A N+ G + TR + L + +L G+
Sbjct: 197 VLHELFGTDIRCCARNELGRECTRL----------FTIDLNQTPQTTLPQLFLKVGEPLW 246
Query: 428 AQAAPVAEAPKF-ITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPS------ 480
+ V F +T + L+EG T T ++ S+ +
Sbjct: 247 IRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYT 306
Query: 481 -QGQQPVAQAAP--VAEAPKF-ITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNG 536
+ +Q+A + E T S+ ++ + + F R P + W ++
Sbjct: 307 CSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKA--YPQIRCTWTFSR 364
Query: 537 KKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
K P + + ++ G Y A N +L
Sbjct: 365 KSFPCEQKGLDNGY----SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN 411
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 112 bits (280), Expect = 2e-26
Identities = 47/351 (13%), Positives = 93/351 (26%), Gaps = 74/351 (21%)
Query: 49 AGKYQRQPSGPEETF------AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEW 102
+ Y PE+ + E + + L+ V+ N+ W
Sbjct: 27 SSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSA--SITLQVLVDA--PGNISCLW 82
Query: 103 IFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKE 162
+F L F + G V++ + ++ + G Y + A T+
Sbjct: 83 VFKHSSLNCQPHFDLQ-NRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTL 141
Query: 163 SLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAH 222
R + + E +++L VP+
Sbjct: 142 LYTLRRPYFRKMEN-------QDALVCISESVPEP------------------------- 169
Query: 223 FEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 282
VE++ E+ +V E C A N
Sbjct: 170 -------------IVEWVLCDSQGESCKEES----PAVVKKEEKVLHELFGTDIRCCARN 212
Query: 283 KWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH 342
+ G+ + + + + L LK G+ C VN + W
Sbjct: 213 ELGRECTRLFTIDL------NQTPQTTLPQLF-LKVGEPLWIRCKAVHVN-HGFGLTWEL 264
Query: 343 NGKPIFHKNRVKMV------SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGE 387
K + N +M + + ++ V +D+G Y C + +
Sbjct: 265 ENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ 315
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 111 bits (278), Expect = 3e-26
Identities = 38/314 (12%), Positives = 83/314 (26%), Gaps = 66/314 (21%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGI 553
++ + + + V + S + + ++ W + L + + G+
Sbjct: 47 QSSGTVYEAAAVE-VDVSASITLQVLVD--APGNISCLWVFKHSSLNCQPHFD-LQNRGV 102
Query: 554 VILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQ-------------- 599
V + IL E +G Y ++ + ++ + T L +
Sbjct: 103 VSMVILKMTETQAGEYLLFIQSEATNYTILFTVS-IRNTLLYTLRRPYFRKMENQDALVC 161
Query: 600 ------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD 653
P VEW + +V + +E C A N+ G +
Sbjct: 162 ISESVPEPIVEWVLCDSQGESCKEES----PAVVKKEEKVLHELFGTDIRCCARNELGRE 217
Query: 654 VTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE 713
T+ + + L L GE
Sbjct: 218 CTRLFTIDL----------------------------NQTPQTTLPQLF-LKVGEPLWIR 248
Query: 714 ASLIPVGDQTMTVEFLYNGKPIEASHRIR------TVHAFGMVVLEILGTKIEDTGVYTC 767
+ + + K +E + ++ + DTG YTC
Sbjct: 249 CK-AVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTC 307
Query: 768 RATNKWGQ-AEISV 780
++ Q A +++
Sbjct: 308 SSSKHPSQSALVTI 321
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-25
Identities = 42/468 (8%), Positives = 103/468 (22%), Gaps = 117/468 (25%)
Query: 369 VQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPV- 427
S Y + + G L ++ +E +
Sbjct: 22 SSVGKSSSYPMVSESPEDL-------------GCALRPQSSGTVYEAAAVEVDVSA-SIT 67
Query: 428 ----AQAAPVAEAPKFITQISDVTQLKEGQSAHFEAR------LTPVTDPDL---VCELF 474
A + + L + R + +T+ + +
Sbjct: 68 LQVLVDAPGNIS----CLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFI- 122
Query: 475 SNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFY 534
+ + + + + +++ + + + P+ +VEW
Sbjct: 123 QS---EATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISE----SVPEPIVEWVL 175
Query: 535 NGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK----------- 583
+ +V + +E C A N+ G + T+
Sbjct: 176 CDSQGESCKEES----PAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQ 231
Query: 584 -------------ASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYR------TFHDF 624
++C + + + W K L G+ +
Sbjct: 232 TTLPQLFLKVGEPLWIRCKAVHV----NHGFGLTWELENKALEEGNYFEMSTYSTNRTMI 287
Query: 625 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVP 684
I+ + ++G Y C ++ A + I+E
Sbjct: 288 RILFAFVSSVARNDTGYYTCSSSKHPSQS---ALVT-------IVE-------------- 323
Query: 685 DSEDGRPPQFTSEFQHLS-NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT 743
+ + + E F + + ++ K +
Sbjct: 324 ------KGFINATNSSEDYEIDQYEEFCFSVR--FKAYPQIRCTWTFSRKSFPCEQKGLD 375
Query: 744 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQ 791
+ G Y A N Q L + S ++
Sbjct: 376 ----NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTL--NIRSGTK 417
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-22
Identities = 44/336 (13%), Positives = 81/336 (24%), Gaps = 70/336 (20%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVT 125
+ +P F+ E Q L E + P +EW+ E V
Sbjct: 140 TLLYTLRRPYFRKMENQDA-LVCISE--SVPEPIVEWVLCDSQGESCKEES----PAVVK 192
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEE 185
+ +++ C A N G T
Sbjct: 193 KEEKVLHELFGTDIRCCARNELGRECTRLFTI---------------------------- 224
Query: 186 SLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKP 245
+ L L GE + + + K
Sbjct: 225 --------------DLNQTPQTTLPQLF-LKVGEPLWIRCK-AVHVNHGFGLTWELENKA 268
Query: 246 IEASHRIR------TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKS 299
+E + ++ + DTG YTC ++ Q S + V+K
Sbjct: 269 LEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKG 325
Query: 300 KGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDF 359
+ + + + F P+++ W + K K + +
Sbjct: 326 FINATNSSEDYE----IDQYEEFCFSVRFKA--YPQIRCTWTFSRKSF--PCEQKGLDNG 377
Query: 360 GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ H GEY+ A N + T+
Sbjct: 378 Y--SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN 411
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 83.6 bits (206), Expect = 4e-17
Identities = 30/252 (11%), Positives = 54/252 (21%), Gaps = 64/252 (25%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK------TT 118
L P+ L +PL + + + + W K LE G+ F+
Sbjct: 227 NQTPQTTL-PQLFLKVGEPLWIRCKA-VHVNHGFGLTWELENKALEEGNYFEMSTYSTNR 284
Query: 119 ADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLE 178
+ ++ V D G YTC + ++ T
Sbjct: 285 TMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVT------------------------ 320
Query: 179 KIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLS-NLSEGEIAHFEASLIPVGDQTMTV 237
I + + + + E F +
Sbjct: 321 -IVE-------------------KGFINATNSSEDYEIDQYEEFCFSVR--FKAYPQIRC 358
Query: 238 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD 297
+ ++ K + + G Y A N Q L
Sbjct: 359 TWTFSRKSFPCEQKGLD----NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRS 414
Query: 298 KSKGQPPKFTSH 309
K H
Sbjct: 415 -----GTKHHHH 421
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 1e-09
Identities = 15/149 (10%), Positives = 40/149 (26%), Gaps = 21/149 (14%)
Query: 637 ENSGVYECRATNKYGSDVTKAS---LKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQ 693
++ V +C N +D + VS+ P + + +
Sbjct: 5 QDLPVIKCVLINHKNNDSSVGKSSSYPMVSE--------------SPEDLGCALRPQSSG 50
Query: 694 FTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLE 753
E + + + + ++ +++ + + G+V +
Sbjct: 51 TVYEAAAVE-VDVSASITLQV--LVDAPGNISCLWVFKHSSLNCQPHFD-LQNRGVVSMV 106
Query: 754 ILGTKIEDTGVYTCRATNKWGQAEISVNL 782
IL G Y ++ I +
Sbjct: 107 ILKMTETQAGEYLLFIQSEATNYTILFTV 135
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 5e-34
Identities = 40/198 (20%), Positives = 70/198 (35%), Gaps = 9/198 (4%)
Query: 200 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTVHA 257
P F E ++L+ + A + G V++ GK I A
Sbjct: 2 AMAPHFKEELRNLN-VRYQSNATLVCKV--TGHPKPIVKWYRQGKEIIADGLKYRIQEFK 58
Query: 258 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLK 317
G L I +D VY RATN+ G + +LE +K PK + ++
Sbjct: 59 GGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVH-AL 117
Query: 318 DGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD-FGFVVMDIAYVQSHDSGE 376
G+ + P+ + W I + +++ ++ V+ D+G
Sbjct: 118 RGEVVSIKI--PFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 377 YVCRAWNKYGEDFTRATI 394
YV A N++G D +
Sbjct: 176 YVVCAKNRFGIDQKTVEL 193
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 2e-27
Identities = 39/196 (19%), Positives = 74/196 (37%), Gaps = 33/196 (16%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKL-PHGHRYR-TFH 549
A AP F ++ ++ ++ +A + VT P +V+W+ GK++ G +YR
Sbjct: 2 AMAPHFKEELRNLN-VRYQSNATLVCK---VTGHPKPIVKWYRQGKEIIADGLKYRIQEF 57
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL--------------------KCV 589
G L I ++++ VY+ RATN+ GS ASL +
Sbjct: 58 KGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHAL 117
Query: 590 SKTNLILESQ-----LPEVEWFYNGKKLPHGHRYRTFHD-FGIVILDILYCYEENSGVYE 643
+ ++ P + W + + Y+ ++ +++G Y
Sbjct: 118 RGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYV 177
Query: 644 CRATNKYGSDVTKASL 659
A N++G D L
Sbjct: 178 VCAKNRFGIDQKTVEL 193
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 5e-25
Identities = 38/186 (20%), Positives = 68/186 (36%), Gaps = 28/186 (15%)
Query: 601 PEVEWFYNGKKL-PHGHRYR-TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 658
P V+W+ GK++ G +YR G L I ++++ VY+ RATN+ GS AS
Sbjct: 34 PIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTAS 93
Query: 659 LKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIP 718
L+ V P+ + GE+ +
Sbjct: 94 LE----------------------VEVPAKIHLPKTLEGMGAVH-ALRGEVVSIKIP--F 128
Query: 719 VGDQTMTVEFLYNGKPIEASHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 777
G + + I+ + + V ++ G + +D G Y A N++G +
Sbjct: 129 SGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQ 188
Query: 778 ISVNLE 783
+V L+
Sbjct: 189 KTVELD 194
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 97.1 bits (242), Expect = 3e-23
Identities = 36/232 (15%), Positives = 69/232 (29%), Gaps = 45/232 (19%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL-GSRFK-TTADFGF 123
P F L+ + L +V P ++W GK + G +++ G+
Sbjct: 5 PHFKEELRN-LNVRYQSNATLVCKVT--GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
L + V D D +Y RA N G + ++
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLE-------------------------- 95
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG 243
V P+ + GE+ + G + +
Sbjct: 96 ----------VEVPAKIHLPKTLEGMGAVH-ALRGEVVSIKIP--FSGKPDPVITWQKGQ 142
Query: 244 KPIEASHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
I+ + + V ++ G + +D G Y A N++G + +V L+
Sbjct: 143 DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 94.8 bits (236), Expect = 2e-22
Identities = 40/289 (13%), Positives = 75/289 (25%), Gaps = 100/289 (34%)
Query: 301 GQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDF- 359
P F +++L ++ +A C +T P+ V+W+ GK I + +F
Sbjct: 2 AMAPHFKEELRNLN-VRYQSNATLVCKVT--GHPKPIVKWYRQGKEIIADGLKYRIQEFK 58
Query: 360 -GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIREL 418
G+ + IA V D+ Y RA N+ G A+++ V
Sbjct: 59 GGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLE------V---------------- 96
Query: 419 ENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFF 478
+ PK + + V G+ +
Sbjct: 97 ----------EVPAKIHLPKTLEGMGAVH-ALRGEVVSIKIP------------------ 127
Query: 479 PSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKK 538
P +T K
Sbjct: 128 --------FSGKPDPV----------ITWQKGQD-------------------------L 144
Query: 539 LPHGHRYRTFHD-FGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+ + Y+ ++ +++G Y A N++G D L
Sbjct: 145 IDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 1e-12
Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 5/96 (5%)
Query: 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTVHA 746
P F E ++L+ + A + G V++ GK I A
Sbjct: 2 AMAPHFKEELRNLN-VRYQSNATLVCKV--TGHPKPIVKWYRQGKEIIADGLKYRIQEFK 58
Query: 747 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
G L I +D VY RATN+ G + +L
Sbjct: 59 GGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASL 94
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 2e-10
Identities = 21/159 (13%), Positives = 42/159 (26%), Gaps = 46/159 (28%)
Query: 1 MVKATNSKGSATTSGTLKCLGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPE 60
V+ATN GS + + +L+ V+ P
Sbjct: 78 QVRATNQGGSVSGTASLE----------------------VEV---------------PA 100
Query: 61 ETFAKPVFIVPLKPEFKLGEAQPLHLEAQVE--PKNDPNLKIEWIFNGKPLELGSRFKTT 118
+ P + + + + ++ P P I W ++ ++
Sbjct: 101 KIHL-PKTLEGMG-AVHALRGEVVSIKIPFSGKPD--P--VITWQKGQDLIDNNGHYQVI 154
Query: 119 AD-FGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ V +D G Y A N G + +
Sbjct: 155 VTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVEL 193
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 1e-32
Identities = 72/544 (13%), Positives = 137/544 (25%), Gaps = 162/544 (29%)
Query: 56 PSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS-- 113
PS E P + + + +E + + +P W N + +
Sbjct: 7 PSIQNELTQPPTITKQSAKDHIVDPRDNILIECEAK--GNPAPSFHWTRNSRFFNIAKDP 64
Query: 114 RFKTTADFGFVTLDLTEVYDR--DQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHP 171
R G + +D +G Y C A N G ++
Sbjct: 65 RVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRI---------------- 108
Query: 172 KGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG 231
L+ + P + E + EG + + P G
Sbjct: 109 --------------RLQV----------SKSPLWPKENLDPVVVQEGAPLTLQCN-PPPG 143
Query: 232 DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDT-GVYTCRATNKWGQ---- 286
+ + ++ + + + G L ++D Y+C A +
Sbjct: 144 LPSPVIFWMSSSMEPITQDKRVSQGHNG--DLYFSNVMLQDMQTDYSCNARFHFTHTIQQ 201
Query: 287 -AEISVNLECVDKSKGQPPKFTSHIKSLEGL--KDGDSAHFECTLTPVNDPELKVEWFHN 343
++ + + P F + G EC + P + W+
Sbjct: 202 KNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIAS--GVPTPDIAWYKK 259
Query: 344 GKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVY 403
G + ++ K + + I V DSGEY C A NK G +++
Sbjct: 260 GGDLP-SDKAKFENFNK--ALRITNVSEEDSGEYFCLASNKMGSIRHTISVR-------- 308
Query: 404 LDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTP 463
V AP ++ + ++ L G+
Sbjct: 309 -----------------------------VKAAPYWLDEPKNLI-LAPGEDGRLV----- 333
Query: 464 VTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPV 523
C A P P V + G+ P+
Sbjct: 334 -------CR--------------ANGNPK---PT-------VQWMVNGE---------PL 353
Query: 524 TDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 583
+ R I+ D + VY+C +N++G +
Sbjct: 354 QSAP--------------PNPNREVAGDTIIFRDTQ---ISSRAVYQCNTSNEHGYLLAN 396
Query: 584 ASLK 587
A +
Sbjct: 397 AFVS 400
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 6e-30
Identities = 73/432 (16%), Positives = 124/432 (28%), Gaps = 119/432 (27%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI--FHKNRVKMVSDF 359
QPP T + D+ EC +P W N + RV M
Sbjct: 15 QPPTITKQSAKDHIVDPRDNILIECEAK--GNPAPSFHWTRNSRFFNIAKDPRVSMRRRS 72
Query: 360 GFVV--MDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRE 417
G +V GEY C A NK+G + R++
Sbjct: 73 GTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNR--------------------IRLQ- 111
Query: 418 LENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE------------------- 458
V+++P + + D ++EG +
Sbjct: 112 ---------------VSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSM 156
Query: 459 ------ARLTPVTDPDLV--------------CELFSNFFPSQGQQPVAQ------AAPV 492
R++ + DL C +F + Q+
Sbjct: 157 EPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVA 216
Query: 493 AEAPKFI--TQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD 550
P F+ + + G E + P + W+ G LP +
Sbjct: 217 ERTPSFMYPQGTASSQMVLRGMDLLLECIAS--GVPTPDIAWYKKGGDLPSDKAKFENFN 274
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQ----------- 599
+ I ++ EE+SG Y C A+NK GS S++ + + E +
Sbjct: 275 KALRITNVS---EEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGR 331
Query: 600 ---------LPEVEWFYNGKKLPHG--HRYRTFHDFGIVILDILYCYEENSGVYECRATN 648
P V+W NG+ L + R I+ D + VY+C +N
Sbjct: 332 LVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQ---ISSRAVYQCNTSN 388
Query: 649 KYGSDVTKASLK 660
++G + A +
Sbjct: 389 EHGYLLANAFVS 400
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 8e-29
Identities = 58/328 (17%), Positives = 112/328 (34%), Gaps = 77/328 (23%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL-PHGHRYRTFHD 550
V+++P + + D ++EG + P P V+ W + + R H+
Sbjct: 112 VSKSPLWPKENLDPVVVQEGAPLTLQCNP-PPGLPSPVIFWMSSSMEPITQDKRVSQGHN 170
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDV---TKASLKCVSKTNLILESQ-------- 599
+ +++ ++ Y C A + + +LK V T + E
Sbjct: 171 GDLYFSNVML--QDMQTDYSCNARFHFTHTIQQKNPFTLK-VLTTRGVAERTPSFMYPQG 227
Query: 600 -----------------------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYE 636
P++ W+ G LP + + I ++ E
Sbjct: 228 TASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVS---E 284
Query: 637 ENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTS 696
E+SG Y C A+NK GS S++ + P +
Sbjct: 285 EDSGEYFCLASNKMGSIRHTISVR-------VKA--------------------APYWLD 317
Query: 697 EFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEI 754
E ++L L+ GE A+ G+ TV+++ NG+P++++ G +
Sbjct: 318 EPKNLI-LAPGEDGRLVCRAN----GNPKPTVQWMVNGEPLQSAPPNPNREVAGDT-IIF 371
Query: 755 LGTKIEDTGVYTCRATNKWGQAEISVNL 782
T+I VY C +N+ G + +
Sbjct: 372 RDTQISSRAVYQCNTSNEHGYLLANAFV 399
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 1e-25
Identities = 54/322 (16%), Positives = 100/322 (31%), Gaps = 58/322 (18%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLP--HGHRYRTFH 549
+ + P Q + + + E +P W N + R
Sbjct: 13 LTQPPTITKQSAKDHIVDPRDNILIECEAKG--NPAPSFHWTRNSRFFNIAKDPRVSMRR 70
Query: 550 DFGIVILDIL--YCYEENSGVYECRATNKYGSDVT-KASLKCVSKTNLILESQL------ 600
G +++D EE G Y+C A NK+G+ ++ + L+ VSK+ L + L
Sbjct: 71 RSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQ-VSKSPLWPKENLDPVVVQ 129
Query: 601 -----------------PEVEWFYNGKKL-PHGHRYRTFHDFGIVILDILYCYEENSGVY 642
P + W + + R H+ + +++ ++ Y
Sbjct: 130 EGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVM--LQDMQTDY 187
Query: 643 ECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLS 702
C A + + K L+ R P F S
Sbjct: 188 SCNARFHFTHTI-------QQKNPFTLKVL----------TTRGVAERTPSFMYPQGTAS 230
Query: 703 NLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIE 760
+ G E I G T + + G + + + + + L I E
Sbjct: 231 SQMVLRGMDLLLEC--IASGVPTPDIAWYKKGGDLPSD-KAKFENFNK--ALRITNVSEE 285
Query: 761 DTGVYTCRATNKWGQAEISVNL 782
D+G Y C A+NK G ++++
Sbjct: 286 DSGEYFCLASNKMGSIRHTISV 307
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404 | Back alignment and structure |
|---|
Score = 84.2 bits (208), Expect = 2e-17
Identities = 44/245 (17%), Positives = 77/245 (31%), Gaps = 56/245 (22%)
Query: 57 SGPEETFAKPVFIVPLKPEF--KLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSR 114
+ P F+ P + L LE P I W G L +
Sbjct: 211 TTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIAS--GVPTPDIAWYKKGGDLP-SDK 267
Query: 115 FKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGE 174
K L +T V + D G Y C A N G + ++
Sbjct: 268 AKFENFNK--ALRITNVSEEDSGEYFCLASNKMGSIRHTISV------------------ 307
Query: 175 EGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF--EASLIPVGD 232
+++ P + E ++L L+ GE A+ G+
Sbjct: 308 ----RVKA-------------------APYWLDEPKNLI-LAPGEDGRLVCRAN----GN 339
Query: 233 QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 292
TV+++ NG+P++++ G + T+I VY C +N+ G +
Sbjct: 340 PKPTVQWMVNGEPLQSAPPNPNREVAGDT-IIFRDTQISSRAVYQCNTSNEHGYLLANAF 398
Query: 293 LECVD 297
+ +D
Sbjct: 399 VSVLD 403
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 6e-32
Identities = 42/199 (21%), Positives = 73/199 (36%), Gaps = 9/199 (4%)
Query: 200 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF- 258
P F E ++L+ + A G V++ GK I A + F
Sbjct: 2 AMAPHFKEELRNLN-VRYQSNATLVCK--VTGHPKPIVKWYRQGKEIIADGLKYRIQEFK 58
Query: 259 -GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLK 317
G L I +D VY RATN+ G + +LE +K PK + ++
Sbjct: 59 GGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVH-AL 117
Query: 318 DGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF-VVMDIAYVQSHDSGE 376
G+ + + P+ + W I + +++ F ++ V+ D+G
Sbjct: 118 RGEVVSIKIPFS--GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 377 YVCRAWNKYGEDFTRATIK 395
YV A N++G D +
Sbjct: 176 YVVCAKNRFGIDQKTVELD 194
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 40/196 (20%), Positives = 72/196 (36%), Gaps = 31/196 (15%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL-PHGHRYR-TFHD 550
A AP F ++ ++ + +A ++T P V+W+ GK++ G +YR
Sbjct: 2 AMAPHFKEELRNLNV-RYQSNATLVCKVTGHPKPI--VKWYRQGKEIIADGLKYRIQEFK 58
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL---------- 600
G L I ++++ VY+ RATN+ GS ASL+ + L L
Sbjct: 59 GGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALR 118
Query: 601 ---------------PEVEWFYNGKKLPHGHRYR-TFHDFGIVILDILYCYEENSGVYEC 644
P + W + + Y+ ++ +++G Y
Sbjct: 119 GEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVV 178
Query: 645 RATNKYGSDVTKASLK 660
A N++G D L
Sbjct: 179 CAKNRFGIDQKTVELD 194
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 96.4 bits (240), Expect = 5e-22
Identities = 37/185 (20%), Positives = 67/185 (36%), Gaps = 28/185 (15%)
Query: 601 PEVEWFYNGKKL-PHGHRYR-TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 658
P V+W+ GK++ G +YR G L I ++++ VY+ RATN+ GS AS
Sbjct: 34 PIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTAS 93
Query: 659 LKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIP 718
L+ V P+ + GE+ +
Sbjct: 94 LE----------------------VEVPAKIHLPKTLEGMGAVH-ALRGEVVSIKIPF-- 128
Query: 719 VGDQTMTVEFLYNGKPIEASHRIRTVHAFGM-VVLEILGTKIEDTGVYTCRATNKWGQAE 777
G + + I+ + + + ++ G + +D G Y A N++G +
Sbjct: 129 SGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQ 188
Query: 778 ISVNL 782
+V L
Sbjct: 189 KTVEL 193
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 84.8 bits (210), Expect = 5e-18
Identities = 36/236 (15%), Positives = 70/236 (29%), Gaps = 45/236 (19%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL-GSRFK-TTADFGF 123
P F L+ + L +V P ++W GK + G +++ G+
Sbjct: 5 PHFKEELRNL-NVRYQSNATLVCKVTGHPKP--IVKWYRQGKEIIADGLKYRIQEFKGGY 61
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
L + V D D +Y RA N G + ++
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLE-------------------------- 95
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG 243
V P+ + GE+ + G + +
Sbjct: 96 ----------VEVPAKIHLPKTLEGMGAVH-ALRGEVVSIKIPF--SGKPDPVITWQKGQ 142
Query: 244 KPIEASHRIRTVHAFGM-VVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
I+ + + + ++ G + +D G Y A N++G + +V L+ D
Sbjct: 143 DLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADV 198
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 8e-12
Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 6/102 (5%)
Query: 488 QAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYR 546
+ PK + + V G+ + P + PD V+ W + + Y+
Sbjct: 97 EVPAKIHLPKTLEGMGAVH-ALRGEVVSIKI---PFSGKPDPVITWQKGQDLIDNNGHYQ 152
Query: 547 -TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
++ +++G Y A N++G D L
Sbjct: 153 VIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 3e-09
Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 7/103 (6%)
Query: 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF- 747
P F E ++L+ + A G V++ GK I A + F
Sbjct: 2 AMAPHFKEELRNLN-VRYQSNATLVCK--VTGHPKPIVKWYRQGKEIIADGLKYRIQEFK 58
Query: 748 -GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSP 789
G L I +D VY RATN+ G + +LE V P
Sbjct: 59 GGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLE--VEVP 99
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 2e-31
Identities = 74/496 (14%), Positives = 128/496 (25%), Gaps = 147/496 (29%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVE-FLYNGKPIEASHRIRTVHA 257
+ P F E + + S A E AS G+ + +G + +R + +
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKAS----GNPMPEIIWIRSDGTAVGDVPGLRQISS 57
Query: 258 FGMVVLEIL----GTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSL 313
G +V + VY C A N++G IS + V + + +
Sbjct: 58 DGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSI-ISRD---VHVRAVVAQYYEADVNKE 113
Query: 314 EGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD-----IA 367
++ G+SA +C + D V W + + + D ++V+ I
Sbjct: 114 HVIR-GNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGA---EYDGKYLVLPSGELHIR 169
Query: 368 YVQSHDS-GEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQP 426
V D Y CR ++ + +A +
Sbjct: 170 EVGPEDGYKSYQCRTKHRLTGETRL----------------------------SATKGRL 201
Query: 427 VAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPV 486
V + AP+ + +L + C
Sbjct: 202 VITEPISSSAPRTPALVQKPLELMVAHTISLL------------C--------------P 235
Query: 487 AQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR 546
AQ P W+ +
Sbjct: 236 AQGFPAPS-----------------------------------FRWYKFIEGTTRKQAVV 260
Query: 547 TFHDFGIV--ILDILYCYEENSGVYECRATNKYGSDVTKASL---------------KCV 589
V L I E+SG Y C N G + + L
Sbjct: 261 LNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVD 320
Query: 590 SKTNLILE-----SQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYEC 644
+ + + V W +GK + H +L I +E+ G+Y+C
Sbjct: 321 FGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQC 370
Query: 645 RATNKYGSDVTKASLK 660
N S A LK
Sbjct: 371 FVRNDRESAEASAELK 386
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 2e-29
Identities = 74/525 (14%), Positives = 132/525 (25%), Gaps = 185/525 (35%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH-NGKPIFHKNRVKMVSDFG 360
+ P F + + A EC + +P ++ W +G + ++ +S G
Sbjct: 2 KGPVFLKEPTNRIDFSNSTGAEIECKASG--NPMPEIIWIRSDGTAVGDVPGLRQISSDG 59
Query: 361 ----FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIR 416
Y Q + Y C A N++G +R +R
Sbjct: 60 KLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRD--------------------VHVR 99
Query: 417 ELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSN 476
A + ++ + G SA + C
Sbjct: 100 ----------------AVVAQYYEADVNKEH-VIRGNSAVIK------------CL---- 126
Query: 477 FFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNG 536
+ F+ +S W +
Sbjct: 127 --------------IPSFVADFVEVVS----------------------------WHTDE 144
Query: 537 KKLPHGH-----RYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD----------- 580
++ +Y + I ++ E+ Y+CR ++ +
Sbjct: 145 EENYFPGAEYDGKYLVLPSGELHIREVG--PEDGYKSYQCRTKHRLTGETRLSATKGRLV 202
Query: 581 VTKASLKCVSKTNLILESQL-------------------PEVEWFYNGKKLPHGHRYRTF 621
+T+ +T +++ L P W+ +
Sbjct: 203 ITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLN 262
Query: 622 HDFGIV--ILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQ 679
V L I E+SG Y C N G + + L +
Sbjct: 263 DRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT-------VTA--------- 306
Query: 680 PAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEA 737
P + + + G A F + G+ TV ++ +GK I
Sbjct: 307 -----------PLSAKIDPPTQT-VDFGRPAVFTCQYT----GNPIKTVSWMKDGKAIGH 350
Query: 738 SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
S VL I K ED G+Y C N AE S L
Sbjct: 351 SES----------VLRIESVKKEDKGMYQCFVRNDRESAEASAEL 385
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 4e-26
Identities = 55/341 (16%), Positives = 88/341 (25%), Gaps = 69/341 (20%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKN-DPNLKIEWIFNGKPL-----ELGSRFKTTA 119
+ + E + ++ + D + W + + E ++
Sbjct: 104 QYYEADVNKE-HVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLP 162
Query: 120 DFGFVTLDLTEVYDRD-QGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLE 178
L + EV D Y CR + T T +TK L+
Sbjct: 163 SG---ELHIREVGPEDGYKSYQCRTKH----RLTGETRLSATKGRLV------------- 202
Query: 179 KIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMT 236
+ + P+ + Q L A G +
Sbjct: 203 ---------------ITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQ----GFPAPS 243
Query: 237 VEFLYNGKPIEASHRIRTVHAFGMV--VLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+ + + V L I +ED+G Y C N G + L
Sbjct: 244 FRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT 303
Query: 295 CVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVK 354
P + + G A F C T +P V W +GK I H
Sbjct: 304 VTA-----PLSAKIDPPTQT-VDFGRPAVFTCQYT--GNPIKTVSWMKDGKAIGHSES-- 353
Query: 355 MVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
V+ I V+ D G Y C N A +K
Sbjct: 354 --------VLRIESVKKEDKGMYQCFVRNDRESAEASAELK 386
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 8e-23
Identities = 52/409 (12%), Positives = 93/409 (22%), Gaps = 100/409 (24%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF-NGKPLELGSRFKTTADFGFV 124
PVF+ + +E + +P +I WI +G + + + G +
Sbjct: 4 PVFLKEPTNRIDFSNSTGAEIECKASG--NPMPEIIWIRSDGTAVGDVPGLRQISSDGKL 61
Query: 125 TLDLTEVYDR----DQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKI 180
D +Y C A N G +
Sbjct: 62 VFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDV------------------------- 96
Query: 181 QDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIP-VGDQTMTVEF 239
+R + ++ + G A + + V D V +
Sbjct: 97 -----HVRA----------VVAQYYEADVNKEH-VIRGNSAVIKCLIPSFVADFVEVVSW 140
Query: 240 LYNGKPIEASHRI--RTVHAFGMVVLEILGTKIEDT-GVYTCRATNKWGQAEISVN---- 292
+ + L I ED Y CR ++
Sbjct: 141 HTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGR 200
Query: 293 LECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKN 351
L + P+ + ++ L + C P P W+ + K
Sbjct: 201 LVITEPISSSAPRTPALVQKPLELMVAHTISLLC---PAQGFPAPSFRWYKFIEGTTRKQ 257
Query: 352 RVKMVSDFGFV--VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQP 409
V + V + I DSG+Y+C N G + +
Sbjct: 258 AVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT-------------- 303
Query: 410 ESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE 458
V T + G+ A F
Sbjct: 304 -----------------------VTAPLSAKIDPPTQT-VDFGRPAVFT 328
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388 | Back alignment and structure |
|---|
Score = 80.8 bits (199), Expect = 2e-16
Identities = 41/239 (17%), Positives = 62/239 (25%), Gaps = 62/239 (25%)
Query: 59 PEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTT 118
+ + P ++ +L A + L + P W +
Sbjct: 205 EPISSSAPRTPALVQKPLELMVAHTISLLCPAQG--FPAPSFRWYKFIEGTTRKQAVVLN 262
Query: 119 ADFGFV--TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEG 176
V TL + + D G Y C N G T +
Sbjct: 263 DRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT------------------- 303
Query: 177 LEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQT 234
+ P + + + G A F + G+
Sbjct: 304 ---VTA-------------------PLSAKIDPPTQT-VDFGRPAVFTCQYT----GNPI 336
Query: 235 MTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
TV ++ +GK I S VL I K ED G+Y C N AE S L
Sbjct: 337 KTVSWMKDGKAIGHSES----------VLRIESVKKEDKGMYQCFVRNDRESAEASAEL 385
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 8e-31
Identities = 72/583 (12%), Positives = 150/583 (25%), Gaps = 136/583 (23%)
Query: 271 EDTGVYTC----RATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFEC 326
+ C + G ++ SV+ + PP L ++ GD C
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPG-----EPSPPSIHPGKSDLI-VRVGDEIRLLC 58
Query: 327 TLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYG 386
T V+W ++N+ ++ ++G+Y C +
Sbjct: 59 TDPGF------VKWTFEILDETNENKQNEWI--------TEKAEATNTGKYTCTNKHGLS 104
Query: 387 EDFTRATIKCFGKGGVYLDSLQPESLARI-RELENAQGQQPVAQ-AAPVAEAPKFITQIS 444
+Y+ P L + R L + + + E + +
Sbjct: 105 NS-------------IYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGC 151
Query: 445 DVTQLKEGQSAHFEARLT----PVTDPD----LVCELFSNFFPSQGQQPVAQAAPVAEAP 496
L + + + V L C + ++ + + P +A
Sbjct: 152 QGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAV 211
Query: 497 KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR-----TFHDF 551
++ L+EG+ + V + W + +Y F+
Sbjct: 212 PVVSVSKASYLLREGEEFTVTCTIKDV-SSSVYSTWKRENSQTKLQEKYNSWHHGDFNYE 270
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPE--------- 602
L I +SGV+ C A N +GS +L+ V K + + +
Sbjct: 271 RQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGEN 330
Query: 603 ---------------VEWFYNGKKLPHGHRYRTFHDFGIVI-----LDILYCYEENSGVY 642
+W Y + + I L + G Y
Sbjct: 331 VDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTY 390
Query: 643 ECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLS 702
+N + ++ V+ P+ +
Sbjct: 391 TFLVSNSDVNAAIAFNVY-VN--------------------------TKPEILTY----- 418
Query: 703 NLSEGEIAHF--EASLIPVGDQTMTVEFLYNGK----------PIEASHRIRTVHAFG-- 748
A+ G T+++ + P++ + FG
Sbjct: 419 --DRLVNGMLQCVAA----GFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKL 472
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQ 791
+V I + + G C+A N G+ N ++
Sbjct: 473 VVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNF--AFKGNNK 513
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 1e-28
Identities = 79/569 (13%), Positives = 151/569 (26%), Gaps = 125/569 (21%)
Query: 55 QPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSR 114
QPS + P I P K + + + L ++W F ++
Sbjct: 26 QPSVSPGEPSPPS-IHPGKSDLIVRVGDEIRLLCTDPGF------VKWTFEILDETNENK 78
Query: 115 FKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGE 174
+ + G YTC + S ++
Sbjct: 79 QNE--------WITEKAEATNTGKYTCTNKHGLS---NSIYVF----------------- 110
Query: 175 EGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQT 234
V D P + + L E P+ D
Sbjct: 111 -------------------VRD-----PAKLFLVDRSLY-GKEDNDTLVR---CPLTDPE 142
Query: 235 MTVEFLY--NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 292
+T L GKP+ R G+++ + + C + G++ +S
Sbjct: 143 VTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSV--KRAYHRLCLHCSVDQE-GKSVLSEK 199
Query: 293 LEC-VDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN 351
V + P + S L++G+ CT+ V+ + W +
Sbjct: 200 FILKVRPAFKAVPVVSVSKASYL-LREGEEFTVTCTIKDVSSS-VYSTWKRENSQTKLQE 257
Query: 352 RVKMVSDFGFVVMD-----IAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDS 406
+ F I+ + +DSG ++C A N +G T++ KG + +
Sbjct: 258 KYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFI---N 314
Query: 407 LQPESLARIRELENAQGQQPV-AQAAPVAEAPKFITQISDVTQLKEGQSAH--FEARLTP 463
+ P + + V +A P P+ I + + E
Sbjct: 315 IFPMINTTVFVNDGENVDLIVEYEAFP---KPEHQQWIYMNRTFTDKWEDYPKSENESNI 371
Query: 464 VTDPDLVCELFSNFFPSQG-------QQPVAQAAP-----VAEAPKFITQISDVTQLKEG 511
+L + ++G AA V P+ +T V
Sbjct: 372 RYVSELH---LTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVN----- 423
Query: 512 QSAHFEARLT-PVT-DPDLVVEWFYNGKKLP------------HGHRYRTFHDFGIVILD 557
L P+ ++W++ + +V
Sbjct: 424 ------GMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSS 477
Query: 558 ILYCYEENSGVYECRATNKYGSDVTKASL 586
I +++G EC+A N G +
Sbjct: 478 IDSSAFKHNGTVECKAYNDVGKTSAYFNF 506
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 1e-26
Identities = 63/514 (12%), Positives = 128/514 (24%), Gaps = 99/514 (19%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
PP L + G+ V++ + ++
Sbjct: 36 PPSIHPGKSDLI-VRVGDEIRLLCTDP--------GFVKWTFEILDETNENKQNE----- 81
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDG 319
+ +TG YTC + I V + P K +SL K+
Sbjct: 82 ---WITEKAEATNTGKYTCTNKHGLS-NSIYVFVR-------DPAKLFLVDRSLY-GKED 129
Query: 320 DSAHFECTLTPVNDPELKVEWFH--NGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEY 377
+ C P+ DPE+ GKP+ R G ++ + +++
Sbjct: 130 NDTLVRC---PLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVK--RAYHRLCL 184
Query: 378 VCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPV----AQAAPV 433
C + G+ + P +G++ +
Sbjct: 185 HCSVDQE-GKSVLSEKFILKVRPAF---KAVPVVSVSKASYLLREGEEFTVTCTIKDVSS 240
Query: 434 AEAPKFIT------QISDVTQLKEGQSAHFEA------RLTPVTDPDL---VCELFSNFF 478
+ T Q + F ++ D +C +N
Sbjct: 241 ---SVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYA-NN-- 294
Query: 479 PSQGQQPVAQAAPVAEAPKFI--TQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNG 536
+ G V V + I+ + +G++ P+ W Y
Sbjct: 295 -TFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQ-WIYMN 352
Query: 537 KKLPHGHRYRTFHDFGIVI-----LDILYCYEENSGVYECRATNKYGSDVTKASLKCVSK 591
+ + I L + G Y +N + ++ +K
Sbjct: 353 RTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTK 412
Query: 592 ---------TNLILE-----SQLPEVEWFYNGKKLP------------HGHRYRTFHDFG 625
N +L+ P ++W++ +
Sbjct: 413 PEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKL 472
Query: 626 IVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
+V I +++G EC+A N G +
Sbjct: 473 VVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNF 506
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524 | Back alignment and structure |
|---|
Score = 70.1 bits (171), Expect = 1e-12
Identities = 39/254 (15%), Positives = 70/254 (27%), Gaps = 51/254 (20%)
Query: 63 FAKPVFIV--PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTAD 120
K + + + + + + L + E +WI+ + ++
Sbjct: 308 VDKGFINIFPMINTTVFVNDGENVDLIVEYE-AFPKPEHQQWIYMNRTFTDKWEDYPKSE 366
Query: 121 FGFV-----TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEE 175
L LT + + G YT N + +Y +TK ++ + +
Sbjct: 367 NESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILT---YDRLVN 423
Query: 176 GLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM 235
G L+ AG P P F + S++PV QT+
Sbjct: 424 G---------MLQCVAAGFP------EPTIDWYFCPGTEQRCSA------SVLPVDVQTL 462
Query: 236 TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 295
GK + V I + + G C+A N G+ N
Sbjct: 463 NSSGPPFGKLV--------------VQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFA- 507
Query: 296 VDKSKGQPPKFTSH 309
K H
Sbjct: 508 FKG----NNKEQIH 517
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 1e-30
Identities = 51/347 (14%), Positives = 89/347 (25%), Gaps = 68/347 (19%)
Query: 484 QPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-----DPDLVVEWFYNGKK 538
QP A +L EG+ P P + + W N
Sbjct: 7 QPAAHTGAARSCRFRGRHYKREFRL-EGEPVALRCPQVPYWLWASVSPRINLTWHKNDSA 65
Query: 539 LPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK----------- 587
T L +L +E+SG Y C N D L+
Sbjct: 66 RTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPF 125
Query: 588 ----------------CVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDI 631
C + + +++W+ + L + G L +
Sbjct: 126 ISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVR-GTTHLLV 184
Query: 632 LYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRP 691
E++G Y C T + + ELR + ++
Sbjct: 185 HDVALEDAGYYRCVLTFAHEGQQYNITRSI-------------ELR-----IKKKKEETI 226
Query: 692 PQFTSEFQHLSNLSEGEIAHFEAS-LIPVGDQTMTVE-FLYNGKPIEASHRIRTVH---- 745
P S + +S S G + G T+ + N IE+++ V
Sbjct: 227 PVIISPLKTIS-ASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPR 285
Query: 746 --------AFGMVVLEILGTKIEDTGV-YTCRATNKWGQAEISVNLE 783
+ V L ED + + C N + ++
Sbjct: 286 QEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK 332
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 120 bits (301), Expect = 9e-30
Identities = 51/357 (14%), Positives = 90/357 (25%), Gaps = 70/357 (19%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKN-----DPNLKIEWIFNGKPLELGSRFKTTAD 120
K EF+L E +P+ L P P + + W N + +T
Sbjct: 19 RFRGRHYKREFRL-EGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMW 77
Query: 121 FGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKI 180
L L D G Y C N + S +
Sbjct: 78 AQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFEN------------------- 118
Query: 181 QDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE---ASLIPVGDQTMTV 237
F + L+ S + +
Sbjct: 119 ---------------------TDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKI 157
Query: 238 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE----ISVNL 293
++ + ++ + + + G L + +ED G Y C T + S+ L
Sbjct: 158 QWYKDSLLLDKDNE-KFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIEL 216
Query: 294 ECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECT-LTPVNDPELKVEWF-HNGKPI---- 347
K + P S +K++ G C P + W+ N I
Sbjct: 217 RIKKKKEETIPVIISPLKTIS-ASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAY 275
Query: 348 ----FHKNRVKMVSDFGFVVMD----IAYVQSHDSG-EYVCRAWNKYGEDFTRATIK 395
+ + S+ ++ V D ++ C N R T+K
Sbjct: 276 PGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK 332
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 4e-26
Identities = 52/411 (12%), Positives = 100/411 (24%), Gaps = 90/411 (21%)
Query: 186 SLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPV-----GDQTMTVEFL 240
QPA + ++ EGE +P + + +
Sbjct: 3 PFTLQPAAHTGAAR-SCRFRGRHYKR-EFRLEGEPVALRCPQVPYWLWASVSPRINLTWH 60
Query: 241 YNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSK 300
N T L +L ED+G Y C N ++S+ L +
Sbjct: 61 KNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFEN-- 118
Query: 301 GQPPKFTSHIKSLEGLKDGDSAHFEC---TLTPVNDPELKVEWFHNGKPIFHKNRVKMVS 357
F I + L S C + + ++K++W+ + + N K +S
Sbjct: 119 --TDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNE-KFLS 175
Query: 358 DFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRE 417
G + + V D+G Y C + T
Sbjct: 176 VRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSI--------------------- 214
Query: 418 LENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNF 477
+ + P I+ + ++ G C
Sbjct: 215 -------ELRIKKKKEETIPVIISPLKTIS-ASLGSRLTIP------------C----KV 250
Query: 478 FPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGK 537
F G + ++ T ++ P V +
Sbjct: 251 FLGTGTPL----------TTMLWWTANDTHIES-------------AYPGGRVTEGPRQE 287
Query: 538 KLPHGHRYRTFHDFGIVILDILYCYEENSGV-YECRATNKYGSDVTKASLK 587
+ Y V L E+ + ++C N + ++K
Sbjct: 288 YSENNENYIE------VPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVK 332
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 84.4 bits (208), Expect = 9e-18
Identities = 28/208 (13%), Positives = 55/208 (26%), Gaps = 32/208 (15%)
Query: 584 ASLKCVSKTNLILES--QLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 641
+L+C + S + W N T L +L +E+SG
Sbjct: 36 VALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGT 95
Query: 642 YECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHL 701
Y C N D L+ + E F +
Sbjct: 96 YVCTTRNASYCDKMSIELR-------VFE-------------------NTDAFLPFISYP 129
Query: 702 SNLSEGEIAHFE---ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTK 758
L+ S + +++ + ++ + + + G L +
Sbjct: 130 QILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNE-KFLSVRGTTHLLVHDVA 188
Query: 759 IEDTGVYTCRATNKWGQAEISVNLECVV 786
+ED G Y C T + ++ +
Sbjct: 189 LEDAGYYRCVLTFAHEGQQYNITRSIEL 216
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 1e-04
Identities = 22/114 (19%), Positives = 34/114 (29%), Gaps = 18/114 (15%)
Query: 59 PEETFAKPVFIVPLKP-EFKLGEAQPLHLEAQV-EPKNDPNLKIEWIFNGKPL------- 109
++ PV I PLK LG L + +V P + W
Sbjct: 220 KKKEETIPVIISPLKTISASLGS--RLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPG 277
Query: 110 ---ELGSRFKTTAD---FGFVTLDLTEVYDRDQGI-YTCRAWNLAGETFTSTTI 156
G R + + + + V L V D + + C N TT+
Sbjct: 278 GRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 1e-29
Identities = 30/208 (14%), Positives = 67/208 (32%), Gaps = 23/208 (11%)
Query: 203 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTVHAFGM 260
FT + + E F V +++N K I +++ G+
Sbjct: 3 DPFTKSELAVE-ILEKGQVRFWMQAEK-LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60
Query: 261 VVLEILGTKIEDTGVYTCRATNKWGQAEISVN--------------LECVDKSKGQPPKF 306
+ + + + ED G YT + + +V + + + Q P F
Sbjct: 61 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 120
Query: 307 TSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDI 366
++ + + +C + + E + W+ + + I + G + I
Sbjct: 121 VEYLSWE--VTGECNVLLKCKVANIK-KETHIVWYKDEREISVDEKHDFKD--GICTLLI 175
Query: 367 AYVQSHDSGEYVCRAWNKYGEDFTRATI 394
D+G Y + G+D +R +
Sbjct: 176 TEFSKKDAGIYEVILKDDRGKDKSRLKL 203
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-28
Identities = 33/231 (14%), Positives = 77/231 (33%), Gaps = 33/231 (14%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTAD--FGF 123
F ++ E + Q E K N K+ +IFN K + G ++K D G
Sbjct: 3 DPFTKSELA-VEILEKGQVRFWMQAE-KLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
+ + + ++ D D+G YT + + ++ +
Sbjct: 61 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLV----------------------GDVF 98
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSN-LSEGEIAHFEASLIPVGDQTMTVEFLYN 242
++ + + + P F ++LS ++ + + + + + + +
Sbjct: 99 KKLQKEAEFQRQEWIRKQGPHFV---EYLSWEVTGECNVLLKCKVANI-KKETHIVWYKD 154
Query: 243 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
+ I + G+ L I +D G+Y + G+ + + L
Sbjct: 155 EREISVDEKHDFKD--GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 203
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-26
Identities = 27/185 (14%), Positives = 68/185 (36%), Gaps = 17/185 (9%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHD--FGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 658
+V + +N K++ G +Y+ D GI+ + + +E+ G Y + + ++ +
Sbjct: 33 AKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVV 92
Query: 659 LKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSN-LSEGEIAHFEASLI 717
L L E++ + + P F ++LS ++ + +
Sbjct: 93 LVGDVFKKLQKEAEFQR--------QEWIRKQGPHFV---EYLSWEVTGECNVLLKCKVA 141
Query: 718 PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 777
+ + + + + + I + G+ L I +D G+Y + G+ +
Sbjct: 142 NI-KKETHIVWYKDEREISVDEKHDFKD--GICTLLITEFSKKDAGIYEVILKDDRGKDK 198
Query: 778 ISVNL 782
+ L
Sbjct: 199 SRLKL 203
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 100 bits (249), Expect = 5e-24
Identities = 29/205 (14%), Positives = 68/205 (33%), Gaps = 45/205 (21%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD--FGI 553
F V ++ E F + + + V + +N K++ G +Y+ D GI
Sbjct: 3 DPFTKSELAV-EILEKGQVRFWMQAEKL-SGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60
Query: 554 VILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL------------- 600
+ + + +E+ G Y + + ++ + L L E++
Sbjct: 61 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHF 120
Query: 601 --------------------------PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYC 634
+ W+ + +++ ++ GI L I
Sbjct: 121 VEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEF 178
Query: 635 YEENSGVYECRATNKYGSDVTKASL 659
++++G+YE + G D ++ L
Sbjct: 179 SKKDAGIYEVILKDDRGKDKSRLKL 203
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 2e-13
Identities = 14/93 (15%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGI 553
+ P F+ +S ++ + + ++ + + W+ + +++ ++ GI
Sbjct: 116 QGPHFVEYLSW--EVTGECNVLLKCKVAN-IKKETHIVWYKDEREISVDEKHDF--KDGI 170
Query: 554 VILDILYCYEENSGVYECRATNKYGSDVTKASL 586
L I ++++G+YE + G D ++ L
Sbjct: 171 CTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 203
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 3e-13
Identities = 23/156 (14%), Positives = 47/156 (30%), Gaps = 29/156 (18%)
Query: 1 MVKATNSKGSATTSGTLKCLGQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPE 60
+ + K + ++ + V +V L + + Q
Sbjct: 77 TFQLQDGKATNHST-----------------------VVLVGDVFKKLQKEAEFQRQEWI 113
Query: 61 ETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTAD 120
P F+ L E + L+ +V I W + + + + +
Sbjct: 114 RKQG-PHFVEYLSWEVTGEC--NVLLKCKVA-NIKKETHIVWYKDEREISVDEKHDFKD- 168
Query: 121 FGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
G TL +TE +D GIY + G+ + +
Sbjct: 169 -GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKL 203
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 1e-09
Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 4/114 (3%)
Query: 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTVHAFGM 749
FT + + E F V +++N K I +++ G+
Sbjct: 3 DPFTKSELAVE-ILEKGQVRFWMQAEK-LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGI 60
Query: 750 VVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKLVYSLFEVPQ 803
+ + + + ED G YT + + +V L V+ Q + + E +
Sbjct: 61 IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIR 114
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 1e-29
Identities = 44/213 (20%), Positives = 79/213 (37%), Gaps = 20/213 (9%)
Query: 196 DSEDGRPPQFTSEFQ---HLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI 252
+S + R P +T+ + L + F G+ T+ +L NGK + HRI
Sbjct: 9 NSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCP--AGGNPMPTMRWLKNGKEFKQEHRI 66
Query: 253 RTVHAF-GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIK 311
L + D G YTC N++G + +L+ V++S+ +P
Sbjct: 67 GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPA 126
Query: 312 SLEGLKDGDSAHFECTLTPVNDPELKVEWFHN-----------GKPIFHKNRVKMVSDFG 360
+ G F C +D + ++W + G P + ++
Sbjct: 127 NAS-TVVGGDVEFVC--KVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSN 183
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRAT 393
V+ + V D+GEY+C+ N G+ A
Sbjct: 184 AEVLALFNVTEADAGEYICKVSNYIGQANQSAW 216
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 91.9 bits (228), Expect = 4e-21
Identities = 47/263 (17%), Positives = 76/263 (28%), Gaps = 54/263 (20%)
Query: 57 SGPEETFAKPVFIVPLKPEFKL---GEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS 113
S P + K E +L A + +P + W+ NGK +
Sbjct: 7 SENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEH 64
Query: 114 RFKT-TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPK 172
R +L + V D+G YTC N G I + ++ER++H
Sbjct: 65 RIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGS------INHTYHLDVVERSRHR- 117
Query: 173 GEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE----ASLI 228
P + S G F +
Sbjct: 118 -----------------------------PILQAGLPANAS-TVVGGDVEFVCKVYSDAQ 147
Query: 229 PV-----GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNK 283
P + ++ +G P + +++ VL + D G Y C+ +N
Sbjct: 148 PHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNY 207
Query: 284 WGQAEISVNLECVDKSKGQPPKF 306
GQA S L + K Q P
Sbjct: 208 IGQANQSAWLTVLPKQ--QAPGR 228
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 90.7 bits (225), Expect = 1e-20
Identities = 38/200 (19%), Positives = 59/200 (29%), Gaps = 34/200 (17%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFH-DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
P + W NGK+ HR + L + + G Y C N+YGS L
Sbjct: 49 PTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 108
Query: 660 KCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE----AS 715
V + RP + S G F +
Sbjct: 109 D----------------------VVERSRHRPILQAGLPANAS-TVVGGDVEFVCKVYSD 145
Query: 716 LIPV-----GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 770
P + ++ +G P + +++ VL + D G Y C+ +
Sbjct: 146 AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVS 205
Query: 771 NKWGQAEISVNLECVVWSPS 790
N GQA S L V+
Sbjct: 206 NYIGQANQSAWLT-VLPKQQ 224
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 80.3 bits (198), Expect = 4e-17
Identities = 36/303 (11%), Positives = 76/303 (25%), Gaps = 91/303 (30%)
Query: 289 ISVNLECVDKSKGQPPKFTSHIK---SLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNG 344
++ + + + + P +T+ K L + ++ F C P +P + W NG
Sbjct: 1 MAEDFVSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRC---PAGGNPMPTMRWLKNG 57
Query: 345 KPIFHKNRVKM-VSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVY 403
K ++R+ + + V D G Y C N+YG + V
Sbjct: 58 KEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD------V- 110
Query: 404 LDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTP 463
++ + G F
Sbjct: 111 -------------------------VERSRHRPILQAGLPANAS-TVVGGDVEFV----- 139
Query: 464 VTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPV 523
C+ + + +K +
Sbjct: 140 -------CK--------------VYSDAQPH----------IQWIKHVEK---------- 158
Query: 524 TDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 583
++ +G ++ + +L + E ++G Y C+ +N G
Sbjct: 159 ----NGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQS 214
Query: 584 ASL 586
A L
Sbjct: 215 AWL 217
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 3e-16
Identities = 38/215 (17%), Positives = 68/215 (31%), Gaps = 44/215 (20%)
Query: 486 VAQAAPVAEAPKFITQISDVTQL---KEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPH 541
V++ + AP + +L + F P +P + W NGK+
Sbjct: 6 VSENSNNKRAPYWTNTEKMEKRLHAVPAANTVKFRC---PAGGNPMPTMRWLKNGKEFKQ 62
Query: 542 GHRYRTFH-DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNL--ILES 598
HR + L + + G Y C N+YGS L V ++ IL++
Sbjct: 63 EHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQA 122
Query: 599 QLPE-----------------------VEWFYNGKKLPHG-----------HRYRTFHDF 624
LP ++W + +K ++ +
Sbjct: 123 GLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSS 182
Query: 625 GIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
+L + E ++G Y C+ +N G A L
Sbjct: 183 NAEVLALFNVTEADAGEYICKVSNYIGQANQSAWL 217
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 23/127 (18%), Positives = 41/127 (32%), Gaps = 19/127 (14%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN-----------GKP 108
E + +P+ L + +V +D I+WI + G P
Sbjct: 112 ERSRHRPILQAGLPANASTVVGGDVEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLP 169
Query: 109 LELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERT 168
+ L L V + D G Y C+ N G+ S + +++ +
Sbjct: 170 YLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWL------TVLPKQ 223
Query: 169 QHPKGEE 175
Q P E+
Sbjct: 224 QAPGREK 230
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 5e-29
Identities = 41/198 (20%), Positives = 71/198 (35%), Gaps = 13/198 (6%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTVHAFGM 260
PP+FT + G +A F GD + + GK + +
Sbjct: 6 PPRFTRTPVDQT-GVSGGVASFICQA--TGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62
Query: 261 VVLEILGTKI-EDTGVYTCRATNKWGQAEISVNL--ECVDKSKGQPPKFTSHIKSLEGLK 317
VL I + D +Y C A+N G+ +S L D+ P + ++
Sbjct: 63 SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKV-VE 121
Query: 318 DGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN---RVKMVSDFGFVVMDIAYVQSHDS 374
+A C +P+ ++ WF + P+ N R+K + + I + D
Sbjct: 122 RTRTATMLC--AASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQ 179
Query: 375 GEYVCRAWNKYGEDFTRA 392
G+Y C A N G ++
Sbjct: 180 GKYECVATNSAGTRYSAP 197
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 96.0 bits (239), Expect = 1e-22
Identities = 44/202 (21%), Positives = 67/202 (33%), Gaps = 38/202 (18%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRT-FH 549
P+F D T G A F + T DP + W GKK+ + F
Sbjct: 3 GETPPRFTRTPVDQT-GVSGGVASFICQ---ATGDPRPKIVWNKKGKKVSNQRFEVIEFD 58
Query: 550 DFGIVILDIL-YCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLI---------LESQ 599
D +L I + +YEC A+N G L + + + + +
Sbjct: 59 DGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLK 118
Query: 600 ------------------LPEVEWFYNGKKL---PHGHRYRTFHDFGIVILDILYCYEEN 638
PE+ WF + + + R + I L I E +
Sbjct: 119 VVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESD 178
Query: 639 SGVYECRATNKYGSDVT-KASL 659
G YEC ATN G+ + A+L
Sbjct: 179 QGKYECVATNSAGTRYSAPANL 200
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 93.3 bits (232), Expect = 9e-22
Identities = 36/182 (19%), Positives = 59/182 (32%), Gaps = 28/182 (15%)
Query: 601 PEVEWFYNGKKLPHGHRYRT-FHDFGIVILDIL-YCYEENSGVYECRATNKYGSDVTKAS 658
P++ W GKK+ + F D +L I + +YEC A+N G
Sbjct: 36 PKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTR 95
Query: 659 LKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIP 718
L V D P Q + A +
Sbjct: 96 LT-VL-------------------REDQIPRGFPTIDMGPQLKV-VERTRTATMLCA--A 132
Query: 719 VGDQTMTVEFLYNGKPIEAS---HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775
G+ + + + P++ S RI+ + + + L+I ++ D G Y C ATN G
Sbjct: 133 SGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGT 192
Query: 776 AE 777
Sbjct: 193 RY 194
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 89.1 bits (221), Expect = 3e-20
Identities = 48/252 (19%), Positives = 72/252 (28%), Gaps = 51/252 (20%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTT-ADFG 122
P F Q DP KI W GK + D
Sbjct: 5 TPPRFTRTPVD-QTGVSGGVASFICQAT--GDPRPKIVWNKKGKKVSNQRFEVIEFDDGS 61
Query: 123 FVTLDLTEVYD-RDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQ 181
L + + RD+ IY C A N GE ST + +++ Q P+G
Sbjct: 62 GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRL------TVLREDQIPRG-------- 107
Query: 182 DLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY 241
P Q + A + G+ + +
Sbjct: 108 --------------------FPTIDMGPQLKV-VERTRTATMLCA--ASGNPDPEITWFK 144
Query: 242 NGKPIEAS---HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE-ISVNLECVD 297
+ P++ S RI+ + + + L+I ++ D G Y C ATN G NL V
Sbjct: 145 DFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLY-VR 203
Query: 298 KSKGQPPKFTSH 309
H
Sbjct: 204 ----GTKHHHHH 211
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 8e-17
Identities = 53/287 (18%), Positives = 78/287 (27%), Gaps = 95/287 (33%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFH-KNRVKMVSDFGF 361
PP+FT G+ G A F C T DP K+ W GK + + + V D
Sbjct: 6 PPRFTRTPVDQTGV-SGGVASFICQAT--GDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62
Query: 362 VVMDIAYVQS-HDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELEN 420
V+ I +++ D Y C A N GE + V + P
Sbjct: 63 SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLT------VLREDQIPRG--------- 107
Query: 421 AQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPS 480
P ++ ++A
Sbjct: 108 ---------------FPTIDMGPQLKV-VERTRTATMLCA-------------------- 131
Query: 481 QGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLP 540
A P E +T K+ PV +
Sbjct: 132 ------ASGNPDPE----------ITWFKDFL---------PVDTSN------------- 153
Query: 541 HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVT-KASL 586
+ R + I L I E + G YEC ATN G+ + A+L
Sbjct: 154 NNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANL 200
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 7e-11
Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 7/114 (6%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTVHAFGM 749
PP+FT + G +A F GD + + GK + +
Sbjct: 6 PPRFTRTPVDQT-GVSGGVASFICQA--TGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62
Query: 750 VVLEILGTKI-EDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKLVYSLFEVP 802
VL I + D +Y C A+N G+ +S L V Q + ++
Sbjct: 63 SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLT--VLREDQIPRGFPTIDMG 114
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 4e-10
Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 6/99 (6%)
Query: 59 PEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS---RF 115
+ P + + + + + + +P+ +I W + P++ + R
Sbjct: 102 DQIPRGFPTIDMGPQLK-VVERTRTATMLCAA--SGNPDPEITWFKDFLPVDTSNNNGRI 158
Query: 116 KTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTST 154
K L + + + DQG Y C A N AG +++
Sbjct: 159 KQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAP 197
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 7e-27
Identities = 39/351 (11%), Positives = 86/351 (24%), Gaps = 64/351 (18%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVT 125
+ + A + + N+ I W + + + +
Sbjct: 4 DKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEK 63
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEE 185
L D G Y C N + + +E + Q L
Sbjct: 64 LWFVPAKVEDSGHYYCVVRNSSYCLRIKISA------KFVENEPNLCYNAQAIFKQKLPV 117
Query: 186 SLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE----ASLIPVGDQTMTVEFLY 241
++ +++
Sbjct: 118 --------------------------------AGDGGLVCPYMEFFKNENNELPKLQWYK 145
Query: 242 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS----VNLECVD 297
+ KP+ + + L ++ + G YTC A+ + + + ++
Sbjct: 146 DCKPLLLDNIHFSGV---KDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLE 202
Query: 298 KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI------FHKN 351
++K P S + G C +T W NG I ++
Sbjct: 203 ENKPTRPVIVSPANETMEVDLGSQIQLICNVT--GQLSDIAYWKWNGSVIDEDDPVLGED 260
Query: 352 RVKMVSDFGF------VVMDIAYVQSHD-SGEYVCRAWNKYGEDFTRATIK 395
+ + V++I+ ++S + C A N +G D +
Sbjct: 261 YYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI 311
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-25
Identities = 53/393 (13%), Positives = 98/393 (24%), Gaps = 89/393 (22%)
Query: 201 RPPQFTS-EFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
+ E + + S EI L P + T+ + + S +
Sbjct: 2 EADKCKEREEKIILVSSANEIDVRPCPLNP-NEHKGTITWYKDDSKTPVSTEQASRIHQH 60
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDG 319
L + K+ED+G Y C N I ++ + V+ + + + L
Sbjct: 61 KEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEP--NLCYNAQAIFKQKLPVA 118
Query: 320 DSAHFEC----TLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSG 375
C N+ K++W+ + KP+ N + + V G
Sbjct: 119 GDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLI---VMNVAEKHRG 175
Query: 376 EYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAE 435
Y C A Y + + R+ E +
Sbjct: 176 NYTCHASYTYLG--------------------KQYPITRVIEF--------ITLEENKPT 207
Query: 436 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEA 495
P ++ ++ ++ G C +
Sbjct: 208 RPVIVSPANETMEVDLGSQIQLI------------CNVTGQLSDI--------------- 240
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
G + + D V+ Y + P R T I +
Sbjct: 241 ---------AYWKWNGS---------VIDEDDPVLGEDYYSVENPANKRRST----LITV 278
Query: 556 LDILYCYEEN-SGVYECRATNKYGSDVTKASLK 587
L+I + C A N +G D L
Sbjct: 279 LNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI 311
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 99.8 bits (248), Expect = 5e-23
Identities = 47/338 (13%), Positives = 90/338 (26%), Gaps = 78/338 (23%)
Query: 494 EAPKFIT-QISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR---TFH 549
EA K + + + L P + + W+ + K P H
Sbjct: 2 EADKCKEREEKIILVSSANEIDVRPCPLNP-NEHKGTITWYKDDSKTPVSTEQASRIHQH 60
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK---------------------- 587
+ + E+SG Y C N K S K
Sbjct: 61 KEKLWFVPAK---VEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPV 117
Query: 588 -------CVSKTNLILE-SQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENS 639
C E ++LP+++W+ + K L + + + ++++++ E++
Sbjct: 118 AGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNV---AEKHR 174
Query: 640 GVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQ 699
G Y C A+ Y + + P S
Sbjct: 175 GNYTCHASYTYLGKQYPITRVIEFI------------------TLEENKPTRPVIVSPAN 216
Query: 700 HLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTV------------H 745
+ G + G + + +NG I+ +
Sbjct: 217 ETMEVDLGSQIQLICNVT----GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRR 272
Query: 746 AFGMVVLEILGTKIED-TGVYTCRATNKWGQAEISVNL 782
+ + VL I + +TC A N G + L
Sbjct: 273 STLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 310
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 71.7 bits (175), Expect = 1e-13
Identities = 23/196 (11%), Positives = 48/196 (24%), Gaps = 37/196 (18%)
Query: 598 SQLPEVEWFYNGKKLPHGHRYR---TFHDFGIVILDILYCYEENSGVYECRATNKYGSDV 654
+ W+ + K P H + + E+SG Y C N
Sbjct: 33 EHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAK---VEDSGHYYCVVRNSSYCLR 89
Query: 655 TKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE- 713
K S K V + ++ L
Sbjct: 90 IKISAKFVENE------------------------PNLCYNAQAIFKQKLPVAGDGGLVC 125
Query: 714 ---ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 770
++ +++ + KP+ + + L ++ + G YTC A+
Sbjct: 126 PYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV---KDRLIVMNVAEKHRGNYTCHAS 182
Query: 771 NKWGQAEISVNLECVV 786
+ + +
Sbjct: 183 YTYLGKQYPITRVIEF 198
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 68.6 bits (167), Expect = 1e-12
Identities = 24/222 (10%), Positives = 55/222 (24%), Gaps = 53/222 (23%)
Query: 486 VAQAAPVAEAPKFITQISDVTQLKEGQSAHFE----ARLTPVTDPDLVVEWFYNGKKLPH 541
+ P + Q +L + ++W+ + K L
Sbjct: 96 FVENEP---NLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLL 152
Query: 542 GHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKT--------- 592
+ + + ++++++ E++ G Y C A+ Y + T
Sbjct: 153 DNIHFSGVKDRLIVMNV---AEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRP 209
Query: 593 ----------------NLILE-----SQLPEVEWFYNGKKL---------PHGHRYRTFH 622
+ L W +NG + + +
Sbjct: 210 VIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPAN 269
Query: 623 DFGIVILDILY----CYEENSGVYECRATNKYGSDVTKASLK 660
++ +L + C A N +G D L
Sbjct: 270 KRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI 311
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 67.4 bits (164), Expect = 3e-12
Identities = 37/251 (14%), Positives = 64/251 (25%), Gaps = 60/251 (23%)
Query: 64 AKPVFIVPLKPEF--KLGEAQPLHLE----AQVEPKNDPNLKIEWIFNGKPLELGSRFKT 117
+P + F KL A L + +N+ K++W + KPL L + +
Sbjct: 99 NEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFS 158
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGL 177
L + V ++ +G YTC A T
Sbjct: 159 GVK---DRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFI---------------- 199
Query: 178 EKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTM 235
+ P S + G + G +
Sbjct: 200 ----------------TLEENKPTRPVIVSPANETMEVDLGSQIQLICNVT----GQLSD 239
Query: 236 TVEFLYNGKPIEASHRIRTV------------HAFGMVVLEILGTKIED-TGVYTCRATN 282
+ +NG I+ + + + VL I + +TC A N
Sbjct: 240 IAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKN 299
Query: 283 KWGQAEISVNL 293
G + L
Sbjct: 300 THGIDAAYIQL 310
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 5e-08
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 2/95 (2%)
Query: 690 RPPQFTS-EFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
+ E + + S EI L P + T+ + + S +
Sbjct: 2 EADKCKEREEKIILVSSANEIDVRPCPLNP-NEHKGTITWYKDDSKTPVSTEQASRIHQH 60
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
L + K+ED+G Y C N I ++ +
Sbjct: 61 KEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAK 95
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 4e-05
Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 15/107 (14%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRF---- 115
E +PV + P ++ + L V + W +NG ++
Sbjct: 203 ENKPTRPVIVSPANETMEVDLGSQIQLICNVT--GQLSDIAYWKWNGSVIDEDDPVLGED 260
Query: 116 --------KTTADFGFVTLDLTEVYDRD-QGIYTCRAWNLAGETFTS 153
L+++E+ R + +TC A N G
Sbjct: 261 YYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAY 307
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 7e-27
Identities = 45/200 (22%), Positives = 77/200 (38%), Gaps = 19/200 (9%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF- 258
PP+ + Q+ + G +A F A GD ++ + NGK + + TV
Sbjct: 6 PPEIIRKPQNQG-VRVGGVASFYCAAR----GDPPPSIVWRKNGKKVSGTQSRYTVLEQP 60
Query: 259 -GMVVLEILGTKI-EDTGVYTCRATNKWGQ---AEISVNLECVDKSKGQPPKFTSHIKSL 313
G+ +L I + D Y C A N G A+ ++ + DK+ P T +
Sbjct: 61 GGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTR 120
Query: 314 EGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHD 373
++ G + C + +P + W N + N + D I + D
Sbjct: 121 V-IEVGHTVLMTCK--AIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQ---IENSREED 174
Query: 374 SGEYVCRAWNKYGEDFTRAT 393
G+Y C A N G + ++AT
Sbjct: 175 QGKYECVAENSMGTEHSKAT 194
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 6e-21
Identities = 44/200 (22%), Positives = 68/200 (34%), Gaps = 41/200 (20%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLP--HGHRYRTF 548
A P+ I + + ++ G A F DP + W NGKK+
Sbjct: 3 GAHPPEIIRKPQNQG-VRVGGVASFYCA---ARGDPPPSIVWRKNGKKVSGTQSRYTVLE 58
Query: 549 HDFGIVILDIL-YCYEENSGVYECRATNKYGSDVT-KASLKCVSKTNLILESQ------- 599
GI IL I + YEC A N G V+ A+L + + +
Sbjct: 59 QPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLT-IYEGDKTPAGFPVITQGP 117
Query: 600 ---------------------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEEN 638
P + W N K+ + + D + I + EE+
Sbjct: 118 GTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSR---EED 174
Query: 639 SGVYECRATNKYGSDVTKAS 658
G YEC A N G++ +KA+
Sbjct: 175 QGKYECVAENSMGTEHSKAT 194
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 86.4 bits (214), Expect = 2e-19
Identities = 42/181 (23%), Positives = 63/181 (34%), Gaps = 30/181 (16%)
Query: 601 PEVEWFYNGKKLP--HGHRYRTFHDFGIVILDIL-YCYEENSGVYECRATNKYGSDVT-K 656
P + W NGKK+ GI IL I + YEC A N G V+
Sbjct: 36 PSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSAD 95
Query: 657 ASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASL 716
A+L + E + PAG P T + G
Sbjct: 96 ATL------------TIYEGDKTPAG--------FPVITQGPGTRV-IEVGHTVLMTCK- 133
Query: 717 IPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 776
+G+ T + ++ N ++ S+ ++ G L+I ++ ED G Y C A N G
Sbjct: 134 -AIGNPTPNIYWIKNQTKVDMSNPRYSLKD-G--FLQIENSREEDQGKYECVAENSMGTE 189
Query: 777 E 777
Sbjct: 190 H 190
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 4e-18
Identities = 44/253 (17%), Positives = 67/253 (26%), Gaps = 49/253 (19%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL--GSRFKT 117
E P I + + DP I W NGK +
Sbjct: 1 ETGAHPPEIIRKPQN-QGVRVGGVASFYCAAR--GDPPPSIVWRKNGKKVSGTQSRYTVL 57
Query: 118 TADFGFVTLDLTEVY-DRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEG 176
G L + V RD Y C A N G+ + ++ E + P G
Sbjct: 58 EQPGGISILRIEPVRAGRDDAPYECVAENGVGDA-----VSADATLTIYEGDKTPAG--- 109
Query: 177 LEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMT 236
P T + G +G+ T
Sbjct: 110 -------------------------FPVITQGPGTRV-IEVGHTVLMTCK--AIGNPTPN 141
Query: 237 VEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 296
+ ++ N ++ S+ ++ G L+I ++ ED G Y C A N G V
Sbjct: 142 IYWIKNQTKVDMSNPRYSLKD-G--FLQIENSREEDQGKYECVAENSMGTEHSKATNLYV 198
Query: 297 DKSKGQPPKFTSH 309
T H
Sbjct: 199 K----VRRVGTKH 207
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 3e-08
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 6/97 (6%)
Query: 59 PEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTT 118
+ PV + + + + +P I WI N +++ + +
Sbjct: 104 DKTPAGFPVITQGPG-TRVIEVGHTVLMTCKA--IGNPTPNIYWIKNQTKVDMSNPRYSL 160
Query: 119 ADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTT 155
D G L + + DQG Y C A N G + T
Sbjct: 161 KD-G--FLQIENSREEDQGKYECVAENSMGTEHSKAT 194
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-26
Identities = 42/193 (21%), Positives = 75/193 (38%), Gaps = 14/193 (7%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGM 260
+ P T+ + + + E+A F + + + N I+ ++ G
Sbjct: 6 KAPVITTPLETV-DALVEEVATFMCA--VESYPQPEISWTRNKILIKLFDTRYSIRENGQ 62
Query: 261 VVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGD 320
+ L IL + D G+Y C A N G A S V PK T +++ + +G
Sbjct: 63 L-LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK----MKPKITRPPINVK-IIEGL 116
Query: 321 SAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCR 380
A C T + +P+ V W + +R+ ++ I VQ D+G+Y C
Sbjct: 117 KAVLPC--TTMGNPKPSVSWIKGDSALRENSRIAVLESGSLR---IHNVQKEDAGQYRCV 171
Query: 381 AWNKYGEDFTRAT 393
A N G +++
Sbjct: 172 AKNSLGTAYSKLV 184
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 88.6 bits (220), Expect = 2e-20
Identities = 38/191 (19%), Positives = 60/191 (31%), Gaps = 30/191 (15%)
Query: 489 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRT 547
A + +AP T + V + A F V P + W N + +
Sbjct: 1 AEKLPKAPVITTPLETVD-ALVEEVATFMCA---VESYPQPEISWTRNKILIKLFDTRYS 56
Query: 548 FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV----------SKTNLILE 597
+ G + L IL + + G+Y C A N G V V +I
Sbjct: 57 IRENGQL-LTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEG 115
Query: 598 SQ-----------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRA 646
+ P V W L R + I ++ +E++G Y C A
Sbjct: 116 LKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQ---KEDAGQYRCVA 172
Query: 647 TNKYGSDVTKA 657
N G+ +K
Sbjct: 173 KNSLGTAYSKL 183
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 1e-17
Identities = 48/232 (20%), Positives = 71/232 (30%), Gaps = 56/232 (24%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVE--PKNDPNLKIEWIFNGKPLEL-GSRFK 116
E+ PV PL+ + VE P+ P I W N ++L +R+
Sbjct: 2 EKLPKAPVITTPLET-VDALVEEVATFMCAVESYPQ--PE--ISWTRNKILIKLFDTRYS 56
Query: 117 TTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEG 176
+ L + V D D GIY C A N G S
Sbjct: 57 IRENGQ--LLTILSVEDSDDGIYCCTANNGVGGAVESC----------GALQVK------ 98
Query: 177 LEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMT 236
P+ T ++ + EG A + +G+ +
Sbjct: 99 ------------------------MKPKITRPPINVK-IIEGLKAVLPCT--TMGNPKPS 131
Query: 237 VEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 288
V ++ + + RI V G L I + ED G Y C A N G A
Sbjct: 132 VSWIKGDSALRENSRIA-VLESGS--LRIHNVQKEDAGQYRCVAKNSLGTAY 180
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 3e-17
Identities = 38/177 (21%), Positives = 59/177 (33%), Gaps = 33/177 (18%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
PE+ W N + + + G + L IL + + G+Y C A N G V
Sbjct: 37 PEISWTRNKILIKLFDTRYSIRENGQL-LTILSVEDSDDGIYCCTANNGVGGAVESCGAL 95
Query: 661 CVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG 720
V P+ T ++ + EG A + +G
Sbjct: 96 QVK--------------------------MKPKITRPPINVK-IIEGLKAVLPCT--TMG 126
Query: 721 DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 777
+ +V ++ + + RI V G L I + ED G Y C A N G A
Sbjct: 127 NPKPSVSWIKGDSALRENSRIA-VLESGS--LRIHNVQKEDAGQYRCVAKNSLGTAY 180
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 1e-10
Identities = 33/190 (17%), Positives = 52/190 (27%), Gaps = 42/190 (22%)
Query: 430 AAPVAEAPKFITQISDVTQLKEGQSAHFE----------------ARLTPVTDPDLVCE- 472
A + +AP T + V + A F L + D
Sbjct: 1 AEKLPKAPVITTPLETVD-ALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRE 59
Query: 473 -----LFSNFFPS------------QGQQPVAQAA-PVAEAPKFITQISDVTQLKEGQSA 514
+ S G + A V PK +V + EG A
Sbjct: 60 NGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVK-IIEGLKA 118
Query: 515 HFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRAT 574
+ +P V W L R + I ++ +E++G Y C A
Sbjct: 119 VLPCT--TMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQ---KEDAGQYRCVAK 173
Query: 575 NKYGSDVTKA 584
N G+ +K
Sbjct: 174 NSLGTAYSKL 183
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 2e-09
Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
Query: 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGM 749
+ P T+ + + + E+A F + + + N I+ ++ G
Sbjct: 6 KAPVITTPLETV-DALVEEVATFMCA--VESYPQPEISWTRNKILIKLFDTRYSIRENGQ 62
Query: 750 VVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
+ L IL + D G+Y C A N G A S
Sbjct: 63 L-LTILSVEDSDDGIYCCTANNGVGGAVESC 92
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 4e-09
Identities = 22/93 (23%), Positives = 29/93 (31%), Gaps = 6/93 (6%)
Query: 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
KP P K+ E L +P + WI L SR G
Sbjct: 98 KMKPKITRPPI-NVKIIEGLKAVLP--CTTMGNPKPSVSWIKGDSALRENSRIAVLES-G 153
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTT 155
+L + V D G Y C A N G ++
Sbjct: 154 --SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLV 184
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 7e-26
Identities = 45/198 (22%), Positives = 70/198 (35%), Gaps = 18/198 (9%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIR-TVHAF 258
F +GE A S V +LY+ + + R + A
Sbjct: 2 MLTFREVVSPQE-FKQGEDAEVVCRVS----SSPAPAVSWLYHNEEVTTISDNRFAMLAN 56
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLE-GLK 317
L+IL D G+Y C + ++ + PP + KS +
Sbjct: 57 N--NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV---PPAISMPQKSFNATAE 111
Query: 318 DGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEY 377
G+ F C PE + WF NGK I + + + + + + D G Y
Sbjct: 112 RGEEMTFSCR--ASGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPY 167
Query: 378 VCRAWNKYGEDFTRATIK 395
VCRA NK GED +A ++
Sbjct: 168 VCRATNKAGEDEKQAFLQ 185
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 94.8 bits (236), Expect = 1e-22
Identities = 39/193 (20%), Positives = 68/193 (35%), Gaps = 36/193 (18%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLP--HGHRYRTFHDF 551
F +S K+G+ A R V+ P V W Y+ +++ +R+ +
Sbjct: 2 MLTFREVVSPQE-FKQGEDAEVVCR---VSSSPAPAVSWLYHNEEVTTISDNRFAMLANN 57
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV------------SKTNLILESQ 599
+ IL+I + + G+Y C + ++ + + S +
Sbjct: 58 NLQILNIN---KSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGE 114
Query: 600 ------------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRAT 647
P + WF NGK + +Y L + + G Y CRAT
Sbjct: 115 EMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRAT 172
Query: 648 NKYGSDVTKASLK 660
NK G D +A L+
Sbjct: 173 NKAGEDEKQAFLQ 185
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 92.5 bits (230), Expect = 1e-21
Identities = 38/187 (20%), Positives = 66/187 (35%), Gaps = 37/187 (19%)
Query: 601 PEVEWFYNGKKLP--HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 658
P V W Y+ +++ +R+ + + IL+I + + G+Y C + ++
Sbjct: 32 PAVSWLYHNEEVTTISDNRFAMLANNNLQILNIN---KSDEGIYRCEGRVEARGEIDFRD 88
Query: 659 LKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLS--EGEIAHFEASL 716
+ +I+ PP + Q N + GE F
Sbjct: 89 II------VIVNV-------------------PPAISMP-QKSFNATAERGEEMTFSCR- 121
Query: 717 IPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 776
G + + NGK IE + + + L + D G Y CRATNK G+
Sbjct: 122 -ASGSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGED 178
Query: 777 EISVNLE 783
E L+
Sbjct: 179 EKQAFLQ 185
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 6e-20
Identities = 48/236 (20%), Positives = 75/236 (31%), Gaps = 56/236 (23%)
Query: 64 AKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS--RFKTTAD 120
+ F + P EFK GE + +V + P + W+++ + + S RF A+
Sbjct: 1 SMLTFREVVSPQEFKQGE--DAEVVCRVS--SSPAPAVSWLYHNEEVTTISDNRFAMLAN 56
Query: 121 FGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKI 180
L + + D+GIY C A I + +
Sbjct: 57 -N--NLQILNINKSDEGIYRCEGRVEARGEIDFRDI--------------------IVIV 93
Query: 181 QDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVE 238
PP + Q N + GE F G +
Sbjct: 94 NV-------------------PPAISMP-QKSFNATAERGEEMTFSCR--ASGSPEPAIS 131
Query: 239 FLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+ NGK IE + + + L + D G Y CRATNK G+ E L+
Sbjct: 132 WFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 185
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 2e-10
Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Query: 492 VAEAPKFI-TQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD 550
V P Q S + G+ F R P+ + WF NGK + +Y
Sbjct: 93 VNVPPAISMPQKSFNATAERGEEMTFSCR--ASGSPEPAISWFRNGKLIEENEKYILKGS 150
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L + + G Y CRATNK G D +A L+
Sbjct: 151 NTE--LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 185
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 7e-08
Identities = 19/102 (18%), Positives = 31/102 (30%), Gaps = 10/102 (9%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIR-TVHAF 747
F +GE A S V +LY+ + + R + A
Sbjct: 2 MLTFREVVSPQE-FKQGEDAEVVCRVS----SSPAPAVSWLYHNEEVTTISDNRFAMLAN 56
Query: 748 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSP 789
L+IL D G+Y C + ++ +V P
Sbjct: 57 N--NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVP 96
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 8e-26
Identities = 66/345 (19%), Positives = 101/345 (29%), Gaps = 68/345 (19%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWI-FNGKPLELG-SRFKTTADFGF 123
V IVP + E +GE++ + + + I W NG+ L R +
Sbjct: 4 QVDIVPSQGEISVGESKFFLCQVAGDA---KDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 124 V-TLDLTEVYDRDQGIYTCRAWNLAGETFTST---TIYCSTKESLIERTQHPKGEEGLEK 179
TL + D GIY C G +T I+
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF---------------------- 98
Query: 180 IQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTV 237
+ F + EGE A T+
Sbjct: 99 ---------------------QKLMFKNAPTPQE-FKEGEDAVIVCDVV----SSLPPTI 132
Query: 238 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD 297
+ + G+ + +R L+I G K D G Y C +++ +
Sbjct: 133 IWKHKGRDVILKKDVR-FIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191
Query: 298 KSKGQPPKFTSHIKSLE-GLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV 356
PP + + G S C PE + W +G+PI ++
Sbjct: 192 NV---PPTVQARQSIVNATANLGQSVTLVCDAD--GFPEPTMSWTKDGEPIENEEEDDEK 246
Query: 357 SDFGFVVMD--IAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGK 399
F + I V +D EYVC A NK GE +K F K
Sbjct: 247 HIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 291
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 9e-26
Identities = 55/319 (17%), Positives = 101/319 (31%), Gaps = 65/319 (20%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWF-YNGKKL-PHGHRYRTFHDFGI 553
+ S + G+S F + D + WF NG+KL P+ R +
Sbjct: 3 LQVDIVPSQGE-ISVGESKFFLCQ-VAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 554 V-ILDILYCYEENSGVYECRATNKYGSDVT-KASLKCVSKTNLILESQ------------ 599
L I +++G+Y+C T + G+ ++K K
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120
Query: 600 --------LPEVEWFYNGKKLP--HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNK 649
P + W + G+ + R+ + + I I + + G Y C
Sbjct: 121 VCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIK---KTDEGTYRCEGRIL 177
Query: 650 YGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLS-NLSEGE 708
++ ++ +I+ PP + ++ + G+
Sbjct: 178 ARGEINFKDIQ------VIVNV-------------------PPTVQARQSIVNATANLGQ 212
Query: 709 IAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV--VLEILGTKIEDTGV 764
A G T+ + +G+PIE H F L I D
Sbjct: 213 SVTLVCDAD----GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAE 268
Query: 765 YTCRATNKWGQAEISVNLE 783
Y C A NK G+ + S++L+
Sbjct: 269 YVCIAENKAGEQDASIHLK 287
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 94.9 bits (236), Expect = 1e-21
Identities = 39/203 (19%), Positives = 66/203 (32%), Gaps = 23/203 (11%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE-FLYNGKPIEAS-HRIRTVHAF 258
R Q +S GE F + + + F NG+ + + RI V
Sbjct: 1 RVLQVDIVPSQGE-ISVGESKFFLCQ-VAGDAKDKDISWFSPNGEKLSPNQQRISVVWND 58
Query: 259 GMV-VLEILGTKIEDTGVYTCRATNKWG-----QAEISVNLECVDKSKGQPPKFTSHIKS 312
L I I+D G+Y C T + G + + Q F +
Sbjct: 59 DDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF---------QKLMFKNAPTP 109
Query: 313 LEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSH 372
E K+G+ A C + + + W H G+ + K V+ + + I ++
Sbjct: 110 QE-FKEGEDAVIVCDVV--SSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ-IRGIKKT 165
Query: 373 DSGEYVCRAWNKYGEDFTRATIK 395
D G Y C + I+
Sbjct: 166 DEGTYRCEGRILARGEINFKDIQ 188
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 83.8 bits (207), Expect = 8e-18
Identities = 29/197 (14%), Positives = 55/197 (27%), Gaps = 36/197 (18%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLP--HGHRYRTF 548
+ + F + KEG+ A V + W + G+ + R+
Sbjct: 97 IFQKLMFKNAPTPQE-FKEGEDAVIVCD---VVSSLPPTIIWKHKGRDVILKKDVRFIVL 152
Query: 549 HDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK-------------------CV 589
+ + I I + + G Y C ++ ++
Sbjct: 153 SNNYLQIRGIK---KTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATAN 209
Query: 590 SKTNLILE-----SQLPEVEWFYNGKKLPHGHRYRTFHDFGIVI--LDILYCYEENSGVY 642
++ L P + W +G+ + + H F L I + + Y
Sbjct: 210 LGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEY 269
Query: 643 ECRATNKYGSDVTKASL 659
C A NK G L
Sbjct: 270 VCIAENKAGEQDASIHL 286
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 74.9 bits (184), Expect = 9e-15
Identities = 49/270 (18%), Positives = 75/270 (27%), Gaps = 64/270 (23%)
Query: 41 VQEVEHALAGKYQ---RQPSGPEET-------FAKPVFIVPLKP-EFKLGEAQPLHLEAQ 89
+ AG Y+ G + F K +F P EFK GE +
Sbjct: 66 IYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGE--DAVIVCD 123
Query: 90 VEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGE 149
V + I W G+ + L + L + + D+G Y C LA
Sbjct: 124 VV--SSLPPTIIWKHKGRDVILKKDVRFIVLSNN-YLQIRGIKKTDEGTYRCEGRILARG 180
Query: 150 TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEF 209
I PP +
Sbjct: 181 EINFKDIQVIVNV---------------------------------------PPTVQARQ 201
Query: 210 QHLS-NLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV--VLE 264
++ + G+ A G T+ + +G+PIE H F L
Sbjct: 202 SIVNATANLGQSVTLVCDAD----GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELT 257
Query: 265 ILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
I D Y C A NK G+ + S++L+
Sbjct: 258 IRNVDKNDEAEYVCIAENKAGEQDASIHLK 287
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 9e-15
Identities = 49/331 (14%), Positives = 84/331 (25%), Gaps = 91/331 (27%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH-NGKPI-FHKNRVKMVSDF 359
+ + E + G+S F C + + + WF NG+ + ++ R+ +V +
Sbjct: 1 RVLQVDIVPSQGE-ISVGESKFFLCQ-VAGDAKDKDISWFSPNGEKLSPNQQRISVVWND 58
Query: 360 GFV-VMDIAYVQSHDSGEYVCRAWNKYGEDFTR-ATIKCFGKGGVYLDSLQPESLARIRE 417
+ I D+G Y C + G +K
Sbjct: 59 DDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK---------------------- 96
Query: 418 LENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE------------------- 458
+ + F + KEG+ A
Sbjct: 97 ---------------IFQKLMFKNAPTPQE-FKEGEDAVIVCDVVSSLPPTIIWKHKGRD 140
Query: 459 ------ARLTPVTDPDL-------------VCELFSNFFPSQGQQPVAQAAPVAEAPKFI 499
R +++ L CE + Q V P
Sbjct: 141 VILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEG-RILARGEINFKDIQVI-VNVPPTVQ 198
Query: 500 T--QISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI-- 555
I + T GQS P+ + W +G+ + + H F
Sbjct: 199 ARQSIVNAT-ANLGQSVTLVCDAD--GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSE 255
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTKASL 586
L I + + Y C A NK G L
Sbjct: 256 LTIRNVDKNDEAEYVCIAENKAGEQDASIHL 286
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 1e-14
Identities = 37/230 (16%), Positives = 69/230 (30%), Gaps = 46/230 (20%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWF-YNGKKL-PHGHRYRTFHDFGIV-ILDILYC 634
G C + + ++ WF NG+KL P+ R + L I
Sbjct: 17 GESKF---FLCQVAGDA----KDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNA 69
Query: 635 YEENSGVYECRATNKYGSDVT-KASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQ 693
+++G+Y+C T + G+ ++K + +
Sbjct: 70 NIDDAGIYKCVVTAEDGTQSEATVNVK----------------------IF-----QKLM 102
Query: 694 FTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV 751
F + EGE A T+ + + G+ + +R
Sbjct: 103 FKNAPTPQE-FKEGEDAVIVCDVV----SSLPPTIIWKHKGRDVILKKDVR-FIVLSNNY 156
Query: 752 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKLVYSLFEV 801
L+I G K D G Y C +++ +V P + S+
Sbjct: 157 LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNA 206
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 6/103 (5%)
Query: 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE-FLYNGKPIEAS-HRIRTVHAF 747
R Q +S GE F + + + F NG+ + + RI V
Sbjct: 1 RVLQVDIVPSQGE-ISVGESKFFLCQ-VAGDAKDKDISWFSPNGEKLSPNQQRISVVWND 58
Query: 748 GMV-VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSP 789
L I I+D G+Y C T + G + ++
Sbjct: 59 DDSSTLTIYNANIDDAGIYKCVVTAEDGTQS-EATVNVKIFQK 100
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 8e-26
Identities = 45/208 (21%), Positives = 74/208 (35%), Gaps = 31/208 (14%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEA----SHRIRT 254
+ P+ L + + E A G T+E+ +G+P+ SHR++
Sbjct: 8 QSPRIIEHPTDL-VVKKNEPATLNCKVE----GKPEPTIEWFKDGEPVSTNEKKSHRVQF 62
Query: 255 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ-----AEISVNLECVDKSKGQPPKFTSH 309
+ G K +D G Y C A N+ GQ A + + F
Sbjct: 63 KDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI--------AVLRDDFRVE 114
Query: 310 IKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD---- 365
K + G++A EC P PE + W +G P+ + + ++D
Sbjct: 115 PKDTR-VAKGETALLECG-PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNL 172
Query: 366 -IAYVQSHDSGEYVCRAWNKYGEDFTRA 392
I+ V+ D G Y C A N G +
Sbjct: 173 LISNVEPIDEGNYKCIAQNLVGTRESSY 200
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 81.4 bits (201), Expect = 1e-17
Identities = 40/204 (19%), Positives = 72/204 (35%), Gaps = 37/204 (18%)
Query: 487 AQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKL----PH 541
A A ++P+ I +D+ +K+ + A + V P+ +EWF +G+ +
Sbjct: 1 APLAGQYQSPRIIEHPTDLV-VKKNEPATLNCK---VEGKPEPTIEWFKDGEPVSTNEKK 56
Query: 542 GHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVT-KASLKCVS---------K 591
HR + + E++ G Y C A N+ G V+ ASL+ K
Sbjct: 57 SHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPK 116
Query: 592 TNLILESQ-------------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILD-----ILY 633
+ + + P + W +G L + I+D I
Sbjct: 117 DTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISN 176
Query: 634 CYEENSGVYECRATNKYGSDVTKA 657
+ G Y+C A N G+ +
Sbjct: 177 VEPIDEGNYKCIAQNLVGTRESSY 200
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 79.1 bits (195), Expect = 8e-17
Identities = 48/258 (18%), Positives = 80/258 (31%), Gaps = 56/258 (21%)
Query: 62 TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
+ P I + + + +P L +VE P IEW +G+P+ + F
Sbjct: 6 QYQSPRIIEHPT-DLVVKKNEPATLNCKVE--GKPEPTIEWFKDGEPVSTNEKKSHRVQF 62
Query: 122 ----GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGL 177
F + ++D G Y C A N G+ +
Sbjct: 63 KDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASL-------------------- 102
Query: 178 EKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTV 237
+I L F E + +++GE A E P G T+
Sbjct: 103 -QIAVL------------------RDDFRVEPKDTR-VAKGETALLECG-PPKGIPEPTL 141
Query: 238 EFLYNGKPIEASHRIRTVHAFGMVV-----LEILGTKIEDTGVYTCRATNKWGQAE-ISV 291
++ +G P++ + + + + L I + D G Y C A N G E
Sbjct: 142 IWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYA 201
Query: 292 NLECVDKSKGQPPKFTSH 309
L V + K H
Sbjct: 202 KLI-V-QVKAAAHHHHHH 217
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 4e-15
Identities = 46/287 (16%), Positives = 82/287 (28%), Gaps = 98/287 (34%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI----FHKNRVKMVS 357
Q P+ H L K + A C + PE +EWF +G+P+ +RV+
Sbjct: 8 QSPRIIEHPTDLVVKK-NEPATLNCKVE--GKPEPTIEWFKDGEPVSTNEKKSHRVQFKD 64
Query: 358 DFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRE 417
F + + D GEY C A N+ G+ +R A ++
Sbjct: 65 GALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRH--------------------ASLQ- 103
Query: 418 LENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNF 477
+A F + D + +G++A E C
Sbjct: 104 ---------IA-----VLRDDFRVEPKDTR-VAKGETALLE------------CG----- 131
Query: 478 FPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGK 537
+ P + +K+G ++
Sbjct: 132 --------PPKGIPEPT----------LIWIKDGVPLDDLKAMSFGASS----------- 162
Query: 538 KLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584
R R ++I ++ + G Y+C A N G+ +
Sbjct: 163 ------RVRIVDGGNLLISNVE---PIDEGNYKCIAQNLVGTRESSY 200
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 72.6 bits (178), Expect = 2e-14
Identities = 39/187 (20%), Positives = 65/187 (34%), Gaps = 38/187 (20%)
Query: 601 PEVEWFYNGKKL----PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVT- 655
P +EWF +G+ + HR + + E++ G Y C A N+ G V+
Sbjct: 39 PTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSR 98
Query: 656 KASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEAS 715
ASL+ F E + +++GE A E
Sbjct: 99 HASLQIAVL--------------------------RDDFRVEPKDTR-VAKGETALLECG 131
Query: 716 LIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV-----LEILGTKIEDTGVYTCRAT 770
P G T+ ++ +G P++ + + + + L I + D G Y C A
Sbjct: 132 -PPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQ 190
Query: 771 NKWGQAE 777
N G E
Sbjct: 191 NLVGTRE 197
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 6e-09
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 11/93 (11%)
Query: 690 RPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEA----SHRIRT 743
+ P+ L + + E A G T+E+ +G+P+ SHR++
Sbjct: 8 QSPRIIEHPTDL-VVKKNEPATLNCKVE----GKPEPTIEWFKDGEPVSTNEKKSHRVQF 62
Query: 744 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 776
+ G K +D G Y C A N+ GQA
Sbjct: 63 KDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQA 95
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 8e-26
Identities = 45/203 (22%), Positives = 74/203 (36%), Gaps = 23/203 (11%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVE-FLYNGKPIEAS-HRIRTVH 256
R Q +S GE F + + + F NG+ + + RI V
Sbjct: 1 RVLQVDIVPSQGE-ISVGESKFFLCQVAGDA---KDKDISWFSPNGEKLSPNQQRISVVW 56
Query: 257 AFGMV-VLEILGTKIEDTGVYTCRATNKWG-QAEISVNLECVDKSKGQPPKFTSHIKSLE 314
L I I+D G+Y C T + G Q+E +VN++ Q F + E
Sbjct: 57 NDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF-----QKLMFKNAPTPQE 111
Query: 315 GLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN--RVKMVSDFGFVVMDIAYVQSH 372
K+G+ A C V+ + W H G+ + K R ++S+ + I ++
Sbjct: 112 -FKEGEDAVIVC--DVVSSLPPTIIWKHKGRDVILKKDVRFIVLSN-N--YLQIRGIKKT 165
Query: 373 DSGEYVCRAWNKYGEDFTRATIK 395
D G Y C + I+
Sbjct: 166 DEGTYRCEGRILARGEINFKDIQ 188
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 1e-15
Identities = 35/191 (18%), Positives = 63/191 (32%), Gaps = 37/191 (19%)
Query: 601 PEVEWFY-NGKKLP--HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVT-K 656
++ WF NG+KL ++D L I +++G+Y+C T + G+
Sbjct: 33 KDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEAT 92
Query: 657 ASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASL 716
++K I + F + EGE A
Sbjct: 93 VNVK-------IFQ--------------------KLMFKNAPTPQE-FKEGEDAVIVCD- 123
Query: 717 IPVGDQTMTVEFLYNGKPIEASHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775
V T+ + + G+ + +R V + L+I G K D G Y C
Sbjct: 124 -VVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN--YLQIRGIKKTDEGTYRCEGRILARG 180
Query: 776 AEISVNLECVV 786
+++ +V
Sbjct: 181 EINFKDIQVIV 191
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 2e-15
Identities = 30/191 (15%), Positives = 60/191 (31%), Gaps = 31/191 (16%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFY-NGKKLP--HGHRYRTFHDFG 552
+ S + G+S F + D + WF NG+KL ++D
Sbjct: 3 LQVDIVPSQGE-ISVGESKFFLCQ-VAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVT-KASLKCVSKTNLILESQ------------ 599
L I +++G+Y+C T + G+ ++K K
Sbjct: 61 SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120
Query: 600 --------LPEVEWFYNGKKLPH--GHRYRTFHDFGIVILDILYCYEENSGVYECRATNK 649
P + W + G+ + R+ + + I I + + G Y C
Sbjct: 121 VCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIK---KTDEGTYRCEGRIL 177
Query: 650 YGSDVTKASLK 660
++ ++
Sbjct: 178 ARGEINFKDIQ 188
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 6e-13
Identities = 41/232 (17%), Positives = 67/232 (28%), Gaps = 52/232 (22%)
Query: 67 VFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF-NGKPLELGS-RFKTTADFGFV 124
V IVP + E +GE++ + + K+ + I W NG+ L R +
Sbjct: 5 VDIVPSQGEISVGESKFFLCQVAGDAKD-KD--ISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 125 -TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
TL + D GIY C G + T+ +
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQ-SEATVNVKIFQ--------------------- 99
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG 243
F + EGE A V T+ + + G
Sbjct: 100 ------------------KLMFKNAPTPQE-FKEGEDAVIVCD--VVSSLPPTIIWKHKG 138
Query: 244 KPIEASHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+ + +R V + L+I G K D G Y C +++
Sbjct: 139 RDVILKKDVRFIVLSNN--YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ 188
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 2e-11
Identities = 33/290 (11%), Positives = 70/290 (24%), Gaps = 106/290 (36%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH-NGKPIF-HKNRVKMVSDF 359
+ + E + G+S F C + + + WF NG+ + ++ R+ +V +
Sbjct: 1 RVLQVDIVPSQGE-ISVGESKFFLCQ-VAGDAKDKDISWFSPNGEKLSPNQQRISVVWND 58
Query: 360 GFV-VMDIAYVQSHDSGEYVCRAWNKYGEDFTR-ATIKCFGKGGVYLDSLQPESLARIRE 417
+ I D+G Y C + G +K
Sbjct: 59 DDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK---------------------- 96
Query: 418 LENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNF 477
+ + F + KEG+ A C+
Sbjct: 97 ---------------IFQKLMFKNAPTPQE-FKEGEDAVIV------------CD----- 123
Query: 478 FPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGK 537
++ + +G+ V
Sbjct: 124 ---------VVSSLPPT----------IIWKHKGR---------DVI------------- 142
Query: 538 KLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L R+ + + I I + + G Y C ++ ++
Sbjct: 143 -LKKDVRFIVLSNNYLQIRGIK---KTDEGTYRCEGRILARGEINFKDIQ 188
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 3e-09
Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 10/98 (10%)
Query: 63 FAKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS--RFKTTA 119
F K +F P EFK GE + V + I W G+ + L RF +
Sbjct: 98 FQKLMFKNAPTPQEFKEGE--DAVIVCDV--VSSLPPTIIWKHKGRDVILKKDVRFIVLS 153
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
+ L + + D+G Y C LA I
Sbjct: 154 N-N--YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ 188
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 6e-09
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 10/105 (9%)
Query: 690 RPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVE-FLYNGKPIEAS-HRIRTVH 745
R Q +S GE F + + + F NG+ + + RI V
Sbjct: 1 RVLQVDIVPSQGE-ISVGESKFFLCQVAGDA---KDKDISWFSPNGEKLSPNQQRISVVW 56
Query: 746 AFGMV-VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSP 789
L I I+D G+Y C T + G + + ++
Sbjct: 57 NDDDSSTLTIYNANIDDAGIYKCVVTAEDGT-QSEATVNVKIFQK 100
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 53/337 (15%), Positives = 86/337 (25%), Gaps = 64/337 (18%)
Query: 64 AKPVF-IVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
A P I P PE + + + L +EW P +
Sbjct: 1 ADPAPVIEPSGPELVVEPGETVTLRCVSNGS------VEWDGPISPYWTLDPESPGS--- 51
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQD 182
TL ++ G Y C T+ +Y
Sbjct: 52 --TLTTRNATFKNTGTYRCTELEDPMAGSTTIHLY------------------------- 84
Query: 183 LEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 242
V D P + + EG+ A LI +V +
Sbjct: 85 -----------VKD-----PAHSWNLLAQEVTVVEGQEAVLPC-LITDPALKDSVSLMRE 127
Query: 243 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE-CVDKSKG 301
G + + I K+ D+ Y C+ G+ S + V++
Sbjct: 128 GGRQVLRKTVYFFSPWR--GFIIRKAKVLDSNTYVCKTMVN-GRESTSTGIWLKVNRVHP 184
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
+PP+ L G++A C+ T N G D +
Sbjct: 185 EPPQIKLEPSKLV-RIRGEAAQIVCSAT--NAEVGFNVILKRGDTKLEIPLNSDFQDNYY 241
Query: 362 VVMD---IAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + V D+G Y C A N G +
Sbjct: 242 KKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQ 278
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 84.6 bits (209), Expect = 5e-18
Identities = 45/317 (14%), Positives = 80/317 (25%), Gaps = 70/317 (22%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIV 554
AP ++ ++ G++ VEW +
Sbjct: 4 APVIEPSGPELV-VEPGETVTLRCV---SNGS---VEWDGPISPYW-----TLDPESPGS 51
Query: 555 ILDILYCYEENSGVYECRATNKYGSDVTKASL----------------KCVSKTNLILE- 597
L +N+G Y C + T L V +L
Sbjct: 52 TLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPC 111
Query: 598 -----SQLPEVEWFYNGKK-LPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG 651
+ V G + + Y G +I +S Y C+
Sbjct: 112 LITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAK---VLDSNTYVCKTMVNGR 168
Query: 652 SDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAH 711
+ V++ + PPQ E L GE A
Sbjct: 169 ESTSTGIWLKVNRVHPE----------------------PPQIKLEPSKLV-RIRGEAAQ 205
Query: 712 F--EASLIPVGDQTMTVEFLYNGK---PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYT 766
A+ + L G I + + + + L + +D G+Y+
Sbjct: 206 IVCSAT----NAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYS 261
Query: 767 CRATNKWGQAEISVNLE 783
C A+N G ++N +
Sbjct: 262 CVASNDVGTRTATMNFQ 278
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 71.5 bits (175), Expect = 1e-13
Identities = 28/205 (13%), Positives = 57/205 (27%), Gaps = 47/205 (22%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDL--VVEWFYNGKK-LPHGHRYRTF 548
V + ++ + EGQ A +TDP L V G + + Y
Sbjct: 85 VKDPAHSWNLLAQEVTVVEGQEAVLPCL---ITDPALKDSVSLMREGGRQVLRKTVYFFS 141
Query: 549 HDFGIVILDILYCYEENSGVYECRATNKYGSDVTK------------------------- 583
G +I +S Y C+ +
Sbjct: 142 PWRGFIIRKAK---VLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVR 198
Query: 584 -----ASLKCVSKTNLILESQLPEVEWFYNGKK---LPHGHRYRTFHDFGIVILDILYCY 635
A + C +++ G +P ++ + + L +
Sbjct: 199 IRGEAAQIVCS-----ATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVD 253
Query: 636 EENSGVYECRATNKYGSDVTKASLK 660
+++G+Y C A+N G+ + +
Sbjct: 254 FQDAGIYSCVASNDVGTRTATMNFQ 278
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 7e-12
Identities = 39/251 (15%), Positives = 64/251 (25%), Gaps = 53/251 (21%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
L E + E Q L + + + G L + +
Sbjct: 87 DPAHSWNLLAQEVTVVEGQEAVLPCLI-TDPALKDSVSLMREGGRQVLRKTVYFFSPWR- 144
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
+ + D Y C+ G TST I+ E
Sbjct: 145 -GFIIRKAKVLDSNTYVCKTMV-NGRESTSTGIWLKVNRVHPE----------------- 185
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEFLY 241
PPQ E L GE A A+ + L
Sbjct: 186 ------------------PPQIKLEPSKLV-RIRGEAAQIVCSAT----NAEVGFNVILK 222
Query: 242 NGK---PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
G I + + + + L + +D G+Y+C A+N G ++N + V+
Sbjct: 223 RGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVES 282
Query: 299 SKGQPPKFTSH 309
H
Sbjct: 283 ----HHHHHHH 289
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 7e-11
Identities = 42/330 (12%), Positives = 75/330 (22%), Gaps = 100/330 (30%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P L ++ G++ C N VEW P + + S
Sbjct: 4 APVIEPSGPELV-VEPGETVTLRCV---SNGS---VEWDGPISPYWTLDPESPGS----- 51
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQ 422
+ ++G Y C T +
Sbjct: 52 TLTTRNATFKNTGTYRCTELEDPMAGSTTIHLY--------------------------- 84
Query: 423 GQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDL------------- 469
V + ++ + EGQ A +TDP L
Sbjct: 85 ----------VKDPAHSWNLLAQEVTVVEGQEAVLPCL---ITDPALKDSVSLMREGGRQ 131
Query: 470 ----------------------------VCELFSNFFPSQGQQPVAQAAPVAEAPKFITQ 501
VC+ N S + V P I
Sbjct: 132 VLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKL 191
Query: 502 ISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKK---LPHGHRYRTFHDFGIVILD 557
G++A T G +P ++ + + L
Sbjct: 192 EPSKLVRIRGEAAQIVCS---ATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALS 248
Query: 558 ILYCYEENSGVYECRATNKYGSDVTKASLK 587
+ +++G+Y C A+N G+ + +
Sbjct: 249 LNAVDFQDAGIYSCVASNDVGTRTATMNFQ 278
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289 | Back alignment and structure |
|---|
Score = 60.0 bits (145), Expect = 7e-10
Identities = 28/185 (15%), Positives = 44/185 (23%), Gaps = 36/185 (19%)
Query: 602 EVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 661
VEW + L +N+G Y C + T L
Sbjct: 31 SVEWDGPISPYW-----TLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLY- 84
Query: 662 VSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGD 721
V D P + + EG+ A LI
Sbjct: 85 ---------------------VKD-----PAHSWNLLAQEVTVVEGQEAVLPC-LITDPA 117
Query: 722 QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781
+V + G + + I K+ D+ Y C+ G+ S
Sbjct: 118 LKDSVSLMREGGRQVLRKTVYFFSPWR--GFIIRKAKVLDSNTYVCKTMVN-GRESTSTG 174
Query: 782 LECVV 786
+ V
Sbjct: 175 IWLKV 179
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 105 bits (263), Expect = 1e-25
Identities = 44/216 (20%), Positives = 72/216 (33%), Gaps = 21/216 (9%)
Query: 195 PDSEDGRPPQFTS-EFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR 251
D P +T E L+ F G+ T ++ +L NG+ HR
Sbjct: 4 DTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCP--AAGNPTPSISWLKNGREFRGEHR 61
Query: 252 IRTVH-AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHI 310
I + L + D G YTC NK+G + L+ +++S +P
Sbjct: 62 IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLP 121
Query: 311 KSLEGLKDGDSAHFECTLTPVNDPELKVEWFH----NGKPIFHKNRVKMVSDFGFVVMD- 365
+ G F C +D + ++W NG + + ++
Sbjct: 122 ANQT-AVLGSDVEFHC--KVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESV 178
Query: 366 -------IAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+A V D GEY+CRA N G +
Sbjct: 179 EADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWL 214
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 84.2 bits (208), Expect = 2e-18
Identities = 39/207 (18%), Positives = 61/207 (29%), Gaps = 42/207 (20%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFG----IVILDILYCYEENSGVYECRATNKYGSDVTK 656
P + W NG++ HR +V+ ++ + G Y C NK+GS
Sbjct: 45 PSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVV---PSDRGNYTCVVENKFGSIRQT 101
Query: 657 ASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--- 713
+L V + RP + + G F
Sbjct: 102 YTLD----------------------VLERSPHRPILQAGLPANQT-AVLGSDVEFHCKV 138
Query: 714 -ASLIPV-----GDQTMTVEFLYNGKPIEASHRIR-TVHAFGMVVLEILGTKIEDTGVYT 766
+ P + + +G P + + V L + D G Y
Sbjct: 139 YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYL 198
Query: 767 CRATNKWGQAEISVNLECVVWSPSQTK 793
CRATN G AE + L V P +
Sbjct: 199 CRATNFIGVAEKAFWLS--VHGPRAAE 223
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 2e-17
Identities = 44/245 (17%), Positives = 68/245 (27%), Gaps = 53/245 (21%)
Query: 64 AKPVFIVPLKPEFKL---GEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK-TTA 119
P + P + + KL A + +P I W+ NG+ R
Sbjct: 10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAA--GNPTPSISWLKNGREFRGEHRIGGIKL 67
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEK 179
+L + V D+G YTC N G I + ++ER+ H
Sbjct: 68 RHQQWSLVMESVVPSDRGNYTCVVENKFGS------IRQTYTLDVLERSPHR-------- 113
Query: 180 IQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE----ASLIPV----- 230
P + + G F + P
Sbjct: 114 ----------------------PILQAGLPANQT-AVLGSDVEFHCKVYSDAQPHIQWLK 150
Query: 231 GDQTMTVEFLYNGKPIEASHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 289
+ + +G P + + V L + D G Y CRATN G AE
Sbjct: 151 HVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEK 210
Query: 290 SVNLE 294
+ L
Sbjct: 211 AFWLS 215
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 71.9 bits (176), Expect = 3e-14
Identities = 36/222 (16%), Positives = 66/222 (29%), Gaps = 50/222 (22%)
Query: 480 SQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKK 538
+ V AP P+ + + + + F P +P + W NG++
Sbjct: 1 ADPDTGVDTGAPYWTRPERM-DKKLLA-VPAANTVRFRC---PAAGNPTPSISWLKNGRE 55
Query: 539 LPHGHRYRTFHDFG----IVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNL 594
HR +V+ ++ + G Y C NK+GS +L + ++
Sbjct: 56 FRGEHRIGGIKLRHQQWSLVMESVV---PSDRGNYTCVVENKFGSIRQTYTLDVLERSPH 112
Query: 595 -------ILESQ------------------LPEVEWFYNGKKLPH------------GHR 617
+ +Q P ++W + +
Sbjct: 113 RPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKS 172
Query: 618 YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
+ + V L + E + G Y CRATN G L
Sbjct: 173 WISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWL 214
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 9e-14
Identities = 45/290 (15%), Positives = 79/290 (27%), Gaps = 90/290 (31%)
Query: 302 QPPKFTSHIKSLEGL---KDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKMVS 357
P +T + + L ++ F C P +P + W NG+ ++R+ +
Sbjct: 10 GAPYWTRPERMDKKLLAVPAANTVRFRC---PAAGNPTPSISWLKNGREFRGEHRIGGIK 66
Query: 358 -DFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIR 416
+ + V D G Y C NK+G T+
Sbjct: 67 LRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD--------------------- 105
Query: 417 ELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSN 476
V + +P ++ T G F C+++S+
Sbjct: 106 ----------VLERSPHR-PILQAGLPANQT-AVLGSDVEFH------------CKVYSD 141
Query: 477 FFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNG 536
P + LK + +++ P P + V
Sbjct: 142 AQPH------------------------IQWLKHVEVNG--SKVGPDGTPYVTVL----- 170
Query: 537 KKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+ + V L + E + G Y CRATN G L
Sbjct: 171 ------KSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWL 214
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 2e-09
Identities = 24/104 (23%), Positives = 36/104 (34%), Gaps = 6/104 (5%)
Query: 684 PDSEDGRPPQFTS-EFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR 740
D P +T E L+ F G+ T ++ +L NG+ HR
Sbjct: 4 DTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCP--AAGNPTPSISWLKNGREFRGEHR 61
Query: 741 IRTVH-AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
I + L + D G YTC NK+G + L+
Sbjct: 62 IGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLD 105
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 14/106 (13%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKP----------- 108
E + +P+ L + +V +D I+W+ + +
Sbjct: 108 ERSPHRPILQAGLPANQTAVLGSDVEFHCKV--YSDAQPHIQWLKHVEVNGSKVGPDGTP 165
Query: 109 -LELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTS 153
+ + + + + V L L V +RD G Y CRA N G +
Sbjct: 166 YVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKA 211
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 3e-25
Identities = 56/344 (16%), Positives = 91/344 (26%), Gaps = 64/344 (18%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
+ PV I P PE + + L +EW P +++
Sbjct: 3 SIPV-IEPSVPELVVKPGATVTLRCVGNGS------VEWDGPPSPHWTLYSDGSSS---- 51
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
L ++ G Y C + +Y
Sbjct: 52 -ILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLY-------------------------- 84
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE-FLYN 242
V D P + + + E + A L+ V
Sbjct: 85 ----------VKD-----PARPWNVLAQEVVVFEDQDALLPC-LLTDPVLEAGVSLVRVR 128
Query: 243 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG-QAEISVNLECVDKSKG 301
G+P+ G I K + Y C A IS+ L+ V K
Sbjct: 129 GRPLMRHTNYSFSPWHG---FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLK-VQKVIP 184
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
PP T L G++A C+ + V+ V HN + + ++
Sbjct: 185 GPPALTLVPAELV-RIRGEAAQIVCSASSVDVNF-DVFLQHNNTKLAIPQQSDFHNNRYQ 242
Query: 362 VVMD--IAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVY 403
V+ + V +G Y C A N G+ T + G
Sbjct: 243 KVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNS 286
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 85.8 bits (212), Expect = 2e-18
Identities = 48/315 (15%), Positives = 74/315 (23%), Gaps = 68/315 (21%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
P + ++ +K G + VEW +G PH Y +
Sbjct: 5 PVIEPSVPELV-VKPGATVTLRCV---GNGS---VEW--DGPPSPHWTLYSDGSSSILST 55
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL--------------- 600
+ +N+G Y C L
Sbjct: 56 NNAT---FQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCL 112
Query: 601 -------PEVEWFY-NGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652
V G+ L Y G I + S Y+C A
Sbjct: 113 LTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKF---IQSQDYQCSALMGGRK 169
Query: 653 DVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF 712
++ + V K PP T L GE A
Sbjct: 170 VMSISIRLKVQKVIPG----------------------PPALTLVPAELV-RIRGEAAQI 206
Query: 713 --EASLIPVGDQTMTVEFLYNGK--PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 768
AS + V V +N I ++ L + + G Y+C
Sbjct: 207 VCSASSVDVN---FDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCV 263
Query: 769 ATNKWGQAEISVNLE 783
A+N G+ S+
Sbjct: 264 ASNVQGKHSTSMFFR 278
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 2e-12
Identities = 39/251 (15%), Positives = 64/251 (25%), Gaps = 54/251 (21%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWI-FNGKPLELGSRFKTTADFG 122
L E + E Q L + + + G+PL + + + G
Sbjct: 87 DPARPWNVLAQEVVVFEDQDALLPCLL-TDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG 145
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQD 182
F + Y C A G S +I ++ +
Sbjct: 146 FT---IHRAKFIQSQDYQCSALM-GGRKVMSISIRLKVQKVIPG---------------- 185
Query: 183 LEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEFL 240
PP T L GE A AS + V V
Sbjct: 186 -------------------PPALTLVPAELV-RIRGEAAQIVCSASSVDVN---FDVFLQ 222
Query: 241 YNGK--PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
+N I ++ L + + G Y+C A+N G+ S+ V+
Sbjct: 223 HNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVE- 281
Query: 299 SKGQPPKFTSH 309
+ H
Sbjct: 282 ----SAGNSHH 288
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 65.8 bits (160), Expect = 9e-12
Identities = 41/332 (12%), Positives = 74/332 (22%), Gaps = 100/332 (30%)
Query: 301 GQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG 360
G P + L +K G + C VEW P + S
Sbjct: 2 GSIPVIEPSVPELV-VKPGATVTLRCVGNG------SVEWDGPPSPHWTLYSDGSSS--- 51
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELEN 420
++ ++G Y C +
Sbjct: 52 --ILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLY------------------------- 84
Query: 421 AQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDL----------- 469
V + + ++ + E Q A +TDP L
Sbjct: 85 ------------VKDPARPWNVLAQEVVVFEDQDALLPCL---LTDPVLEAGVSLVRVRG 129
Query: 470 ------------------------------VCELFSNFFPSQGQQPVAQAAPVAEAPKFI 499
C + V P +
Sbjct: 130 RPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPAL 189
Query: 500 TQISDVTQLKEGQSAHFEARLTPVTDPDL--VVEWFYNGKKLPHGHRYR--TFHDFGIVI 555
T + G++A + D+ V +N KL + ++
Sbjct: 190 TLVPAELVRIRGEAAQIVCS---ASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLT 246
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L++ +++G Y C A+N G T +
Sbjct: 247 LNLDQVDFQHAGNYSCVASNVQGKHSTSMFFR 278
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-24
Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 10/160 (6%)
Query: 238 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD 297
F + RI G L I K+ D+G Y C A ++ G + S+ L+
Sbjct: 40 GFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEY 99
Query: 298 KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN--RVKM 355
PKF S+ +G+ + C + ++P + W + + KN +K
Sbjct: 100 -----APKFISNQTIYY-SWEGNPINISCDVK--SNPPASIHWRRDKLVLPAKNTTNLKT 151
Query: 356 VSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
S ++++IA +D G Y C A N G F +
Sbjct: 152 YSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILA 191
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 90.2 bits (224), Expect = 2e-19
Identities = 35/192 (18%), Positives = 53/192 (27%), Gaps = 39/192 (20%)
Query: 601 PEVEWFYNGKKLP-------HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD 653
PE+ W R G L I +SG Y+C A ++ G
Sbjct: 30 PEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGH 89
Query: 654 VTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE 713
L I P+F S EG +
Sbjct: 90 QKSMYLD-------IEY--------------------APKFISNQTIYY-SWEGNPINIS 121
Query: 714 ASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 771
+ + ++ + + + A ++T ++LEI T D G Y C ATN
Sbjct: 122 CDV--KSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATN 179
Query: 772 KWGQAEISVNLE 783
G L
Sbjct: 180 HIGTRFQEYILA 191
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 7e-19
Identities = 33/191 (17%), Positives = 52/191 (27%), Gaps = 32/191 (16%)
Query: 499 ITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLP-------HGHRYRTFHDF 551
I Q+ + T E +P + W R
Sbjct: 4 IIQLKNET-TYENGQVTLVCD--AEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQ------------ 599
G L I +SG Y+C A ++ G L I
Sbjct: 61 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINI 120
Query: 600 --------LPEVEWFYNGKKLP--HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNK 649
+ W + LP + +T+ +IL+I + + G Y C ATN
Sbjct: 121 SCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNH 180
Query: 650 YGSDVTKASLK 660
G+ + L
Sbjct: 181 IGTRFQEYILA 191
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 1e-17
Identities = 57/349 (16%), Positives = 95/349 (27%), Gaps = 98/349 (28%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS-------RFKT 117
+P I L + + +P +I W R +
Sbjct: 1 QPHIIQLKNETTYENGQVTLV----CDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEV 56
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGL 177
G +L + +V D G Y C A + G S +
Sbjct: 57 KGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL--------------------- 95
Query: 178 EKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTV 237
I+ P+F S EG + + + ++
Sbjct: 96 -DIEY-------------------APKFISNQTIYY-SWEGNPINISCDV--KSNPPASI 132
Query: 238 EFLYNGKPIEAS--HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 295
+ + + A ++T ++LEI T D G Y C ATN G L
Sbjct: 133 HWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILAL 192
Query: 296 VDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEW----FHNGKPIFH-- 349
D P G+K + ++ KV + H G PI H
Sbjct: 193 AD--VPSSP---------YGVK----------IIELSQTTAKVSFNKPDSHGGVPIHHYQ 231
Query: 350 -------KNRVKMVSDFG----FVVMDIAYVQSHDSGEYVCRAWNKYGE 387
K+V G V+ + ++ + + E A N G+
Sbjct: 232 VDVKEVASEIWKIVRSHGVQTMVVLNN---LEPNTTYEIRVAAVNGKGQ 277
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 67.5 bits (165), Expect = 5e-12
Identities = 23/98 (23%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLP--HGHRYRTFH 549
+ APKFI+ + EG + + ++P + W + LP + +T+
Sbjct: 97 IEYAPKFISNQTIYY-SWEGNPINISCDVK--SNPPASIHWRRDKLVLPAKNTTNLKTYS 153
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
+IL+I + + G Y C ATN G+ + L
Sbjct: 154 TGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILA 191
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 64 AKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS--RFKTTAD 120
P FI G P+++ V K++P I W + L + KT +
Sbjct: 99 YAPKFISNQTIYYSWEGN--PINISCDV--KSNPPASIHWRRDKLVLPAKNTTNLKTYST 154
Query: 121 FGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ L++ D D G Y C A N G F +
Sbjct: 155 GRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYIL 190
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 727 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786
F + RI G L I K+ D+G Y C A ++ G + S+ L+ +
Sbjct: 40 GFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD--I 97
Query: 787 WSP 789
Sbjct: 98 EYA 100
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 1e-24
Identities = 34/206 (16%), Positives = 63/206 (30%), Gaps = 39/206 (18%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF 258
R + T + + + G+ A+ G + ++ K I +
Sbjct: 17 RGSKITVNPESKA-VLAGQFVKLCCRAT----GHPFVQYQWFKMNKEIPNGNTSE----- 66
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQ-----AEISVN------LECVDKSKGQPPKFT 307
L ++D G Y CR N + +++ V VD +
Sbjct: 67 ----LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQIC 122
Query: 308 SHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIA 367
S + L G + +C V P +WF N P+ H+ + + +
Sbjct: 123 VEPTSQK-LMPGSTLVLQCV--AVGSPIPHYQWFKNELPLTHETKKLYM---------VP 170
Query: 368 YVQSHDSGEYVCRAWNKYGEDFTRAT 393
YV G Y C +N ++
Sbjct: 171 YVDLEHQGTYWCHVYNDRDSQDSKKV 196
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 83.8 bits (207), Expect = 2e-18
Identities = 28/194 (14%), Positives = 59/194 (30%), Gaps = 35/194 (18%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK-ASL 659
+ +WF K++P+G+ L + +++G Y CR N + + ++ + L
Sbjct: 48 VQYQWFKMNKEIPNGNTSE---------LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQL 98
Query: 660 KCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPV 719
+ ++ D Q E L G + V
Sbjct: 99 ------------DVCDIPESFQRSVDGVSESKLQICVEPTSQK-LMPGSTLVLQCV--AV 143
Query: 720 GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 779
G ++ N P+ + + + +E G Y C N + S
Sbjct: 144 GSPIPHYQWFKNELPLTHETK---------KLYMVPYVDLEHQGTYWCHVYNDRDSQD-S 193
Query: 780 VNLECVVWSPSQTK 793
+E ++ +
Sbjct: 194 KKVEIIIDELNNLG 207
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 78.8 bits (194), Expect = 1e-16
Identities = 39/230 (16%), Positives = 69/230 (30%), Gaps = 59/230 (25%)
Query: 480 SQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKK 538
S + V K + GQ R T P + +WF K+
Sbjct: 3 SSHHHHHHSSGLVPRGSKITVNPESKA-VLAGQFVKLCCR---ATGHPFVQYQWFKMNKE 58
Query: 539 LPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK--------------- 583
+P+G+ L + +++G Y CR N + + ++
Sbjct: 59 IPNGNTSE---------LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQR 109
Query: 584 ----------------ASLKCVSKTNLILE-----SQLPEVEWFYNGKKLPHGHRYRTFH 622
S K + + L+L+ S +P +WF N L H +
Sbjct: 110 SVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK---- 165
Query: 623 DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQ 672
+ + Y E+ G Y C N S +K + + N +
Sbjct: 166 -----LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPD 210
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 1e-16
Identities = 39/248 (15%), Positives = 67/248 (27%), Gaps = 60/248 (24%)
Query: 69 IVPLKPEFKLG-------EAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
+VP + + Q + L + P ++ +W K + G+
Sbjct: 14 LVPRGSKITVNPESKAVLAGQFVKLCCRAT--GHPFVQYQWFKMNKEIPNGNTS------ 65
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQ 181
L V+ +D G Y CR N F+ + L +
Sbjct: 66 ---ELIFNAVHVKDAGFYVCRVNNNFTFEFSQWS-------QL--------------DVC 101
Query: 182 DLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY 241
D+ ES +R GV +S Q E L G + VG ++
Sbjct: 102 DIPESFQRSVDGVSES----KLQICVEPTSQK-LMPGSTLVLQCV--AVGSPIPHYQWFK 154
Query: 242 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKG 301
N P+ + + + +E G Y C N + +
Sbjct: 155 NELPLTHETK---------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIII----- 200
Query: 302 QPPKFTSH 309
H
Sbjct: 201 DELNNLGH 208
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 12/109 (11%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIV 554
+ + + L G + + V P +WF N L H +
Sbjct: 118 KLQICVEPTSQK-LMPGSTLVLQCV--AVGSPIPHYQWFKNELPLTHETKK--------- 165
Query: 555 ILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEV 603
+ + Y E+ G Y C N S +K + + N + E
Sbjct: 166 LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQ 214
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 99 bits (249), Expect = 3e-24
Identities = 35/200 (17%), Positives = 65/200 (32%), Gaps = 21/200 (10%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
P+ + + + + +L M + NG + A+ + +
Sbjct: 3 EPRIVTSEEVII-RDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNM----- 56
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDS 321
I + ED+G Y C + + + +E V P T H +S +G
Sbjct: 57 EYRINKPRAEDSGEYHCVY-HFVSAPKANATIE-VK----AAPDITGHKRSEN-KNEGQD 109
Query: 322 AHFECTLTPVNDPELKVEWFHNGKPIFH-----KNRVKMVSDFGFVVMDIAYVQS-HDSG 375
A C P + W +F R +++ + ++I +Q D G
Sbjct: 110 AMMYCKSV--GYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPG 167
Query: 376 EYVCRAWNKYGEDFTRATIK 395
EY C A N G ++
Sbjct: 168 EYECNATNSIGSASVSTVLR 187
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 84.1 bits (208), Expect = 1e-18
Identities = 35/192 (18%), Positives = 59/192 (30%), Gaps = 33/192 (17%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIV 554
P+ +T + + + LT + + W NG +L + +
Sbjct: 3 EPRIVTSEEVIIRD-SLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNM----- 56
Query: 555 ILDILYCYEENSGVYECRATNKYGSDVTKASLK-------CVSKTNL-ILESQ------- 599
I E+SG Y C + + A+++ K + E Q
Sbjct: 57 EYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCK 115
Query: 600 -----LPEVEWFYNGKKLPHGH-----RYRTFHDFGIVILDILY-CYEENSGVYECRATN 648
PE W + R+ + L+I+ E+ G YEC ATN
Sbjct: 116 SVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATN 175
Query: 649 KYGSDVTKASLK 660
GS L+
Sbjct: 176 SIGSASVSTVLR 187
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 4e-16
Identities = 36/239 (15%), Positives = 64/239 (26%), Gaps = 61/239 (25%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
+P + + P+ L+ + + + W NG L + +
Sbjct: 2 NEPRIVTSEEV-IIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNM---- 56
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
+ + D G Y C + + TI +++
Sbjct: 57 -EYRINKPRAEDSGEYHCVY-HFVSAPKANATI----------------------EVKA- 91
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLY 241
P T + N +EG+ A + G +
Sbjct: 92 ------------------APDITGHKRSE-NKNEGQDAMMYCKSV----GYPHPEWMWRK 128
Query: 242 NGKPIEASH-----RIRTVHAFGMVVLEILGTKI-EDTGVYTCRATNKWGQAEISVNLE 294
+ R ++ L I+ +I ED G Y C ATN G A +S L
Sbjct: 129 KENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLR 187
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 3e-14
Identities = 34/191 (17%), Positives = 55/191 (28%), Gaps = 46/191 (24%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
W NG +L + + I E+SG Y C + + A+++
Sbjct: 35 MYSYWTKNGVELTATRKNASNM-----EYRINKPRAEDSGEYHCVY-HFVSAPKANATIE 88
Query: 661 CVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIP 718
+ P T + N +EG+ A +
Sbjct: 89 -------VKA--------------------APDITGHKRSE-NKNEGQDAMMYCKSV--- 117
Query: 719 VGDQTMTVEFLYNGKPIEASH-----RIRTVHAFGMVVLEILGTKI-EDTGVYTCRATNK 772
G + + R ++ L I+ +I ED G Y C ATN
Sbjct: 118 -GYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNS 176
Query: 773 WGQAEISVNLE 783
G A +S L
Sbjct: 177 IGSASVSTVLR 187
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 7e-12
Identities = 26/156 (16%), Positives = 40/156 (25%), Gaps = 45/156 (28%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P+ + + + +C LT + + W NG + K S+ +
Sbjct: 3 EPRIVTSEEVIIRDS-LLPVTLQCNLTSSSHTLMYSYWTKNGVEL--TATRKNASNMEYR 59
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQ 422
I ++ DSGEY C + ATI+
Sbjct: 60 ---INKPRAEDSGEYHCVY-HFVSAPKANATIE--------------------------- 88
Query: 423 GQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE 458
V AP EGQ A
Sbjct: 89 ----------VKAAPDITGHKRSEN-KNEGQDAMMY 113
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 8e-09
Identities = 23/103 (22%), Positives = 31/103 (30%), Gaps = 11/103 (10%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGH-----RY 545
V AP EGQ A + P W + R+
Sbjct: 89 VKAAPDITGHKRSEN-KNEGQDAMMYCK---SVGYPHPEWMWRKKENGVFEEISNSSGRF 144
Query: 546 RTFHDFGIVILDILY-CYEENSGVYECRATNKYGSDVTKASLK 587
+ L+I+ E+ G YEC ATN GS L+
Sbjct: 145 FIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLR 187
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 9e-08
Identities = 13/93 (13%), Positives = 30/93 (32%), Gaps = 7/93 (7%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
P+ + + + + +L M + NG + A+ + +
Sbjct: 3 EPRIVTSEEVII-RDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNM----- 56
Query: 751 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
I + ED+G Y C + + + +E
Sbjct: 57 EYRINKPRAEDSGEYHCVY-HFVSAPKANATIE 88
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190 | Back alignment and structure |
|---|
Score = 51.0 bits (122), Expect = 2e-07
Identities = 23/122 (18%), Positives = 37/122 (30%), Gaps = 17/122 (13%)
Query: 49 AGKYQ---RQPSGPEET-----FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKI 100
+G+Y S P+ A P + E E Q + + P+ +
Sbjct: 68 SGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSE-NKNEGQDAMMYCKSV--GYPHPEW 124
Query: 101 EWIFNGKPL-----ELGSRFKTTADFGFVTLDLTEVYDR-DQGIYTCRAWNLAGETFTST 154
W + RF + L++ + D G Y C A N G ST
Sbjct: 125 MWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVST 184
Query: 155 TI 156
+
Sbjct: 185 VL 186
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 5e-24
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 3/94 (3%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
P+ T ++S + G + F + + P +V+W+HNG + +++ + G
Sbjct: 7 HAPRITLRMRSHR-VPCGQNTRFILNVQ--SKPTAEVKWYHNGVELQESSKIHYTNTSGV 63
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ ++I + DSG Y N GE AT+
Sbjct: 64 LTLEILDCHTDDSGTYRAVCTNYKGEASDYATLD 97
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 4e-23
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF 551
+ AP+ ++ + GQ+ F + + P V+W++NG +L + +
Sbjct: 5 LDHAPRITLRMRSHR-VPCGQNTRFILNVQ--SKPTAEVKWYHNGVELQESSKIHYTNTS 61
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
G++ L+IL C+ ++SG Y TN G A+L
Sbjct: 62 GVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLD 97
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 2e-20
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 3/105 (2%)
Query: 58 GPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT 117
GP P + ++ ++ Q V+ + P +++W NG L+ S+
Sbjct: 1 GPFTLDHAPRITLRMRS-HRVPCGQNTRFILNVQ--SKPTAEVKWYHNGVELQESSKIHY 57
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKE 162
T G +TL++ + + D G Y N GE T+ + +
Sbjct: 58 TNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGGD 102
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 3e-18
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 201 RPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF 258
P+ T + + G+ F ++ T V++ +NG ++ S +I +
Sbjct: 7 HAPRIT---LRMRSHRVPCGQNTRFILNV--QSKPTAEVKWYHNGVELQESSKIHYTNTS 61
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
G++ LEIL +D+G Y TN G+A L+
Sbjct: 62 GVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLD 97
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 3e-18
Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 690 RPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF 747
P+ T + + G+ F ++ T V++ +NG ++ S +I +
Sbjct: 7 HAPRIT---LRMRSHRVPCGQNTRFILNV--QSKPTAEVKWYHNGVELQESSKIHYTNTS 61
Query: 748 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
G++ LEIL +D+G Y TN G+A L+
Sbjct: 62 GVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLD 97
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 1e-16
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
EV+W++NG +L + + G++ L+IL C+ ++SG Y TN G A+L
Sbjct: 38 AEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLD 97
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 2e-22
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 5/98 (5%)
Query: 490 APVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTF 548
P++ P +T + D T + A F + T +P W +GK + G +Y+
Sbjct: 1 GPISSKPVIVTGLQDTT-VSSDSVAKFAVK---ATGEPRPTAIWTKDGKAITQGGKYKLS 56
Query: 549 HDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
D G L+I +SG+Y C N GS + L
Sbjct: 57 EDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 2e-20
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 3/93 (3%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
P + ++ + A F T +P W +GK I + K+ D G
Sbjct: 5 SKPVIVTGLQDTT-VSSDSVAKFAVKAT--GEPRPTAIWTKDGKAITQGGKYKLSEDKGG 61
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
++I + DSG Y C N G + +
Sbjct: 62 FFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 1e-16
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
+KPV + L+ + + +P W +GK + G ++K + D G
Sbjct: 5 SKPVIVTGLQD-TTVSSDSVAKFAVKAT--GEPRPTAIWTKDGKAITQGGKYKLSEDKGG 61
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L++ + D G+YTC N AG +S +
Sbjct: 62 FFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 2e-15
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
P + Q + +S +A F G+ T + +GK I + + G
Sbjct: 6 KPVIVTGLQDTT-VSSDSVAKFAVKA--TGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
LEI T D+G+YTC N G S L
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLT 95
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 2e-15
Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 3/93 (3%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
P + Q + +S +A F G+ T + +GK I + + G
Sbjct: 6 KPVIVTGLQDTT-VSSDSVAKFAVKA--TGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62
Query: 751 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
LEI T D+G+YTC N G S L
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLT 95
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 2e-14
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
P W +GK + G +Y+ D G L+I +SG+Y C N GS + L
Sbjct: 36 PTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKL 94
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 91.6 bits (228), Expect = 2e-22
Identities = 17/93 (18%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 304 PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVV 363
+ I ++G + C + D +V W+ + + + + ++ + G +
Sbjct: 2 AMVSGQIMHAV-GEEGGHVKYVCKIEN-YDQSTQVTWYFGVRQLENSEKYEITYEDGVAI 59
Query: 364 MDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKC 396
+ + + D G Y C+ N YGED + A +
Sbjct: 60 LYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 91.2 bits (227), Expect = 2e-22
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 2/94 (2%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIV 554
QI +EG + ++ D V W++ ++L + +Y ++ G+
Sbjct: 1 GAMVSGQIMHAV-GEEGGHVKYVCKIEN-YDQSTQVTWYFGVRQLENSEKYEITYEDGVA 58
Query: 555 ILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588
IL + + + G Y C+ N YG D + A L
Sbjct: 59 ILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 2e-17
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
+V W++ ++L + +Y ++ G+ IL + + + G Y C+ N YG D + A L
Sbjct: 32 TQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELF 91
Query: 661 C 661
Sbjct: 92 V 92
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 2e-17
Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVT 125
+ + E + ++E D + ++ W F + LE +++ T + G
Sbjct: 2 AMVSGQIMHAV-GEEGGHVKYVCKIEN-YDQSTQVTWYFGVRQLENSEKYEITYEDGVAI 59
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYC 158
L + ++ D G Y C+ N GE + ++
Sbjct: 60 LYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 8e-17
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Query: 210 QHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILG 267
+ + EG + + DQ+ V + + + +E S + + G+ +L +
Sbjct: 6 GQIMHAVGEEGGHVKYVCKIENY-DQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKD 64
Query: 268 TKIEDTGVYTCRATNKWGQAEISVNLEC 295
D G Y C+ N +G+ L
Sbjct: 65 ITKLDDGTYRCKVVNDYGEDSSYAELFV 92
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 8e-17
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Query: 699 QHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILG 756
+ + EG + + DQ+ V + + + +E S + + G+ +L +
Sbjct: 6 GQIMHAVGEEGGHVKYVCKIENY-DQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKD 64
Query: 757 TKIEDTGVYTCRATNKWGQAEISVNLEC 784
D G Y C+ N +G+ L
Sbjct: 65 ITKLDDGTYRCKVVNDYGEDSSYAELFV 92
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 94.9 bits (236), Expect = 3e-22
Identities = 48/209 (22%), Positives = 76/209 (36%), Gaps = 32/209 (15%)
Query: 198 EDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTV 255
++ PP+ L +S+GE A A G T T+E+ G+ +E
Sbjct: 5 QEDFPPRIVEHPSDLI-VSKGEPATLNCKAE----GRPTPTIEWYKGGERVETDKDDPRS 59
Query: 256 HAFGM-------VVLEILGTKIEDTGVYTCRATNKWGQ-----AEISVNLECVDKSKGQP 303
H + + + D GVY C A N G+ A + V +
Sbjct: 60 HRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL--------R 111
Query: 304 PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVV 363
F + + G+ A EC P PE + W +G P+ K+ + G
Sbjct: 112 DDFRQNPSDVMVA-VGEPAVMECQP-PRGHPEPTISWKKDGSPLDDKDERITIRG-G--K 166
Query: 364 MDIAYVQSHDSGEYVCRAWNKYGEDFTRA 392
+ I Y + D+G+YVC N GE +
Sbjct: 167 LMITYTRKSDAGKYVCVGTNMVGERESEV 195
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 3e-18
Identities = 34/202 (16%), Positives = 64/202 (31%), Gaps = 38/202 (18%)
Query: 487 AQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLP----- 540
P+ + SD+ + +G+ A + P +EW+ G+++
Sbjct: 1 GSLRQEDFPPRIVEHPSDLI-VSKGEPATLNCK---AEGRPTPTIEWYKGGERVETDKDD 56
Query: 541 HGHRYRTFHDFGIVILDILYCY--EENSGVYECRATNKYGSDVT-KASLKCVSKTNLILE 597
+ L I++ + GVY C A N G V+ ASL+ + +
Sbjct: 57 PRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQ 116
Query: 598 SQL----------------------PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCY 635
+ P + W +G L T ++I
Sbjct: 117 NPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTR--- 173
Query: 636 EENSGVYECRATNKYGSDVTKA 657
+ ++G Y C TN G ++
Sbjct: 174 KSDAGKYVCVGTNMVGERESEV 195
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 80.2 bits (198), Expect = 3e-17
Identities = 40/185 (21%), Positives = 62/185 (33%), Gaps = 39/185 (21%)
Query: 601 PEVEWFYNGKKLP-----HGHRYRTFHDFGIVILDILYCY--EENSGVYECRATNKYGSD 653
P +EW+ G+++ + L I++ + GVY C A N G
Sbjct: 39 PTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEA 98
Query: 654 VT-KASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF 712
V+ ASL+ F + ++ GE A
Sbjct: 99 VSHDASLE--------------------------VAILRDDFRQNPSDVM-VAVGEPAVM 131
Query: 713 EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNK 772
E P G T+ + +G P++ T+ G L I T+ D G Y C TN
Sbjct: 132 ECQ-PPRGHPEPTISWKKDGSPLDDKDERITIRG-G--KLMITYTRKSDAGKYVCVGTNM 187
Query: 773 WGQAE 777
G+ E
Sbjct: 188 VGERE 192
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 1e-16
Identities = 49/262 (18%), Positives = 77/262 (29%), Gaps = 68/262 (25%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG-----SR 114
+ P + + + + +P L + E P IEW G+ +E S
Sbjct: 4 RQEDFPPRIVEHPS-DLIVSKGEPATLNCKAE--GRPTPTIEWYKGGERVETDKDDPRSH 60
Query: 115 FKTTADFG--FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPK 172
F+ + D+G+Y C A N GE +
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDA----------------- 103
Query: 173 GEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGD 232
SL F + ++ GE A E P G
Sbjct: 104 -------------SLE---------VAILRDDFRQNPSDVM-VAVGEPAVMECQ-PPRGH 139
Query: 233 QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ-----A 287
T+ + +G P++ T+ G L I T+ D G Y C TN G+ A
Sbjct: 140 PEPTISWKKDGSPLDDKDERITIRG-G--KLMITYTRKSDAGKYVCVGTNMVGERESEVA 196
Query: 288 EISVNLECVDKSKGQPPKFTSH 309
E++V + P F
Sbjct: 197 ELTVL---------ERPSFVKA 209
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 3e-13
Identities = 43/289 (14%), Positives = 70/289 (24%), Gaps = 109/289 (37%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI-----FHKNRVKMVS 357
PP+ H L K G+ A C P +EW+ G+ + ++ ++
Sbjct: 9 PPRIVEHPSDLIVSK-GEPATLNCKAE--GRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 358 DFGFVVMDI--AYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARI 415
+ I D G YVC A N GE + A +
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHD--------------------ASL 105
Query: 416 RELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFS 475
F SDV + G+ A E C+
Sbjct: 106 EVA---------------ILRDDFRQNPSDVM-VAVGEPAVME------------CQ--- 134
Query: 476 NFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYN 535
+ P ++ K+G
Sbjct: 135 ----------PPRGHPEPT----------ISWKKDGSP---------------------- 152
Query: 536 GKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584
L T ++I + ++G Y C TN G ++
Sbjct: 153 ---LDDKDERITIRGGKLMITYTR---KSDAGKYVCVGTNMVGERESEV 195
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 1e-06
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 14/99 (14%)
Query: 687 EDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTV 744
++ PP+ L +S+GE A A G T T+E+ G+ +E
Sbjct: 5 QEDFPPRIVEHPSDLI-VSKGEPATLNCKAE----GRPTPTIEWYKGGERVETDKDDPRS 59
Query: 745 HAFGM-------VVLEILGTKIEDTGVYTCRATNKWGQA 776
H + + + D GVY C A N G+A
Sbjct: 60 HRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEA 98
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 94.2 bits (234), Expect = 4e-22
Identities = 38/200 (19%), Positives = 63/200 (31%), Gaps = 17/200 (8%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI--EASHRIRTVHAFG 259
P E + + EG+ ++ +L N P+ R G
Sbjct: 8 DPFPPEERPEVR-VKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG 66
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV-----DKSKGQPPKFTSHIKSLE 314
L I + D G Y+C ++ + + +K P K +
Sbjct: 67 --NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVY 124
Query: 315 GLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDS 374
L G + EC +P + W +P+ + V+ I +Q D
Sbjct: 125 ALM-GQNVTLECFALG--NPVPDIRWRKVLEPMPSTAEISTSGA----VLKIFNIQLEDE 177
Query: 375 GEYVCRAWNKYGEDFTRATI 394
G Y C A N G+D +A I
Sbjct: 178 GIYECEAENIRGKDKHQARI 197
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 3e-17
Identities = 41/236 (17%), Positives = 77/236 (32%), Gaps = 39/236 (16%)
Query: 58 GPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT 117
GP + P F +PE ++ E + + L +L W+ N P+ + +
Sbjct: 1 GPGSGYLDP-FPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRR 59
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGL 177
L + V D+G Y+C + + S LI +
Sbjct: 60 FVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVF-----SKFIPLIPIPERTTKPY-- 112
Query: 178 EKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTV 237
P +F+ + G+ E +G+ +
Sbjct: 113 ------------------------PADIVVQFKDVY-ALMGQNVTLEC--FALGNPVPDI 145
Query: 238 EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
+ +P+ ++ I T A VL+I ++ED G+Y C A N G+ + +
Sbjct: 146 RWRKVLEPMPSTAEISTSGA----VLKIFNIQLEDEGIYECEAENIRGKDKHQARI 197
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 2e-16
Identities = 32/192 (16%), Positives = 55/192 (28%), Gaps = 34/192 (17%)
Query: 498 FITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILD 557
F + ++KEG+ DL W N + R F L
Sbjct: 10 FPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLY 69
Query: 558 ILYCYEENSGVYECRATNKYGS-DVTKASLKCVSKTNLILESQ----------------- 599
I + G Y C ++ + V + + +
Sbjct: 70 IANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQ 129
Query: 600 ------------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRAT 647
+P++ W + +P T + I +I E+ G+YEC A
Sbjct: 130 NVTLECFALGNPVPDIRWRKVLEPMPSTAEISTS-GAVLKIFNIQ---LEDEGIYECEAE 185
Query: 648 NKYGSDVTKASL 659
N G D +A +
Sbjct: 186 NIRGKDKHQARI 197
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 1e-15
Identities = 33/180 (18%), Positives = 60/180 (33%), Gaps = 24/180 (13%)
Query: 603 VEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 662
W N + R F L I + G Y C ++ + +
Sbjct: 42 YRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFS----- 96
Query: 663 SKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ 722
I +PE +P P +F+ + G+ E +G+
Sbjct: 97 ---KFIPLIPIPERTTKPY---------PADIVVQFKDVY-ALMGQNVTLEC--FALGNP 141
Query: 723 TMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+ + +P+ ++ I T A VL+I ++ED G+Y C A N G+ + +
Sbjct: 142 VPDIRWRKVLEPMPSTAEISTSGA----VLKIFNIQLEDEGIYECEAENIRGKDKHQARI 197
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 1e-09
Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 11/105 (10%)
Query: 484 QPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE--ARLTPVTDPDLVVEWFYNGKKLPH 541
P+ + + Q DV GQ+ E A PV PD + W + +P
Sbjct: 102 IPIPERTTKPYPADIVVQFKDVY-ALMGQNVTLECFALGNPV--PD--IRWRKVLEPMPS 156
Query: 542 GHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
T + I +I E+ G+YEC A N G D +A +
Sbjct: 157 TAEISTS-GAVLKIFNIQ---LEDEGIYECEAENIRGKDKHQARI 197
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 9e-07
Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 5/116 (4%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI--EASHRIRTVHAFG 748
P E + + EG+ ++ +L N P+ R G
Sbjct: 8 DPFPPEERPEVR-VKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG 66
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKLVYSLFEVPQP 804
L I + D G Y+C ++ + ++ P +T Y V Q
Sbjct: 67 --NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQF 120
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 1e-06
Identities = 21/94 (22%), Positives = 33/94 (35%), Gaps = 7/94 (7%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
+V K Q + LE +P I W +P+ + T+
Sbjct: 112 YPADIVVQFKDV-YALMGQNVTLECFALG--NPVPDIRWRKVLEPMPSTAEISTSGA--- 165
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
L + + D+GIY C A N+ G+ IY
Sbjct: 166 -VLKIFNIQLEDEGIYECEAENIRGKDKHQARIY 198
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 1e-21
Identities = 30/102 (29%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 491 PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT-FH 549
P EAPK +I T + +G AHF R+ PD EW+ NG K+ R +
Sbjct: 1 PSMEAPKIFERIQSQT-VGQGSDAHFRVRVVG--KPDPECEWYKNGVKIERSDRIYWYWP 57
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSK 591
+ + L I E+S +A N G + A L +K
Sbjct: 58 EDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 3e-21
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 4/99 (4%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV-SDFG 360
+ PK I+S + G AHF + P+ + EW+ NG I +R+ +
Sbjct: 4 EAPKIFERIQSQT-VGQGSDAHFRVRVVG--KPDPECEWYKNGVKIERSDRIYWYWPEDN 60
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGK 399
+ I V DS + +A N GE + A + K
Sbjct: 61 VCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 3e-16
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT-TADFGFV 124
P ++ + +G+ H +V K DP + EW NG +E R +
Sbjct: 6 PKIFERIQSQ-TVGQGSDAHFRVRVVGKPDP--ECEWYKNGVKIERSDRIYWYWPEDNVC 62
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L + +V D +A N+AGET + +
Sbjct: 63 ELVIRDVTGEDSASIMVKAINIAGETSSHAFL 94
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 2e-14
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 4/95 (4%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTV-HAFG 259
P+ Q + + +G AHF + VG E+ NG IE S RI
Sbjct: 4 EAPKIFERIQSQT-VGQGSDAHFRVRV--VGKPDPECEWYKNGVKIERSDRIYWYWPEDN 60
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+ L I ED+ +A N G+ L
Sbjct: 61 VCELVIRDVTGEDSASIMVKAINIAGETSSHAFLL 95
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 2e-14
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 4/95 (4%)
Query: 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTV-HAFG 748
P+ Q + + +G AHF + VG E+ NG IE S RI
Sbjct: 4 EAPKIFERIQSQT-VGQGSDAHFRVRV--VGKPDPECEWYKNGVKIERSDRIYWYWPEDN 60
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
+ L I ED+ +A N G+ L
Sbjct: 61 VCELVIRDVTGEDSASIMVKAINIAGETSSHAFLL 95
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 3e-14
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 601 PEVEWFYNGKKLPHGHRYRT-FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
PE EW+ NG K+ R + + + L I E+S +A N G + A L
Sbjct: 35 PECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFL 94
Query: 660 KCVSK 664
+K
Sbjct: 95 LVQAK 99
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 96.5 bits (239), Expect = 3e-21
Identities = 56/457 (12%), Positives = 105/457 (22%), Gaps = 85/457 (18%)
Query: 246 IEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPK 305
IE + + G + +++ C + GQ+ L P+
Sbjct: 33 IETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVY-----WTPE 87
Query: 306 FTSHIKSLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKMVSDFGFVVM 364
G + C + L V K + + V + V
Sbjct: 88 RVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREP---AVGEPAEVTT 144
Query: 365 DIAYVQSHDSGEYVCRAWNKYGED--FTRATIKCFGKGGVYLDSLQPESLARIRELENAQ 422
+ + H + CR + ++ P L R LE
Sbjct: 145 TVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDT 204
Query: 423 GQQP--VAQAAPVAEAPKFI----TQISDVTQLKEGQSAHFEARLTP-VTDPDLVCELFS 475
+ Q + T S +A ++ D +
Sbjct: 205 QGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCA 264
Query: 476 NFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYN 535
+ Q Q + P ++ + EG + P + +
Sbjct: 265 VILGN-QSQETLQTVTIYSFPAPNVILTKPE-VSEGTEVTVKCEAHPR--AKVTLNGVPA 320
Query: 536 GKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK------------ 583
P L + E+N + C AT + +
Sbjct: 321 QPLGPRAQ------------LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYG 368
Query: 584 -------------------ASLKCVSKTNLILESQLPEVEWFYNGKK-LPHGHRYRTFHD 623
+ C + N LPE++ +G LP G
Sbjct: 369 PRLDERDCPGNWTWPENSQQTPMCQAWGNP-----LPELKCLKDGTFPLPIGESVTV--- 420
Query: 624 FGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
+ G Y CRA + G + ++
Sbjct: 421 -----------TRDLEGTYLCRARSTQGEVTREVTVN 446
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 91.1 bits (225), Expect = 2e-19
Identities = 70/533 (13%), Positives = 128/533 (24%), Gaps = 100/533 (18%)
Query: 67 VFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTL 126
+ P K G + + L IE K L L
Sbjct: 2 TSVSPSKVILPRGG--SVLVTCSTSCDQPMLLGIETPLPKKELLLPGN-------NRKVY 52
Query: 127 DLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEES 186
+L+ V ++ C + G++ T +
Sbjct: 53 ELSNV--QEDSQPMCYSNCPDGQSTAKTFLTVY--------------------------- 83
Query: 187 LRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG-DQTMTVEFLYNGKP 245
P+ S G+ + +TV L K
Sbjct: 84 --------------WTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKE 129
Query: 246 IEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQ--- 302
+ R V V +L + ++CR + + + Q
Sbjct: 130 L---KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFV 186
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
P + S L+ C+L + E +V + + N + F
Sbjct: 187 LPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL---NPTVTYGNDSF 243
Query: 362 VVMDIAYVQSHDSGEY--VCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELE 419
V + D G C T T+ +Y P + + E
Sbjct: 244 SAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVT------IY---SFPAPNVILTKPE 294
Query: 420 NAQGQQPV--AQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTD-PDLVCELFSN 476
++G + +A P A+ ++ V G A + TP + C
Sbjct: 295 VSEGTEVTVKCEAHPRAKV-----TLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLE 349
Query: 477 FFPSQGQQPVAQAAPVAEAPKF-ITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYN 535
+ + V P+ E + +P ++ +
Sbjct: 350 VAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAW--GNPLPELKCLKD 407
Query: 536 GKK-LPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
G LP G + G Y CRA + G + ++
Sbjct: 408 GTFPLPIGESVTV--------------TRDLEGTYLCRARSTQGEVTREVTVN 446
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 75.3 bits (184), Expect = 3e-14
Identities = 65/507 (12%), Positives = 125/507 (24%), Gaps = 106/507 (20%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
G S C+ + L +E K + V +++ VQ + + +
Sbjct: 14 GGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGN-------NRKVYELSNVQ--EDSQPM 64
Query: 379 CRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLA-RIRELENAQGQQ-----PVAQAAP 432
C + G+ + + + PE + G+ V AP
Sbjct: 65 CYSNCPDGQSTAKTFLTVYWT---------PERVELAPLPSWQPVGKNLTLRCQVEGGAP 115
Query: 433 VAEAP----KFITQISDVTQLKEGQSAHFEARLTPVTD-PDLVCELFSNFFPSQGQQPVA 487
A + ++ + E + + C + P +
Sbjct: 116 RANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFEN 175
Query: 488 QAAP----VAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHG 542
+AP P Q+ L+ L + + V ++L
Sbjct: 176 TSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL--- 232
Query: 543 HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS----LKCVSKTNLILES 598
+ T+ + + E+ G G+ + + N+IL
Sbjct: 233 NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTK 292
Query: 599 Q----------------LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVY 642
+V P G R + L + E+N +
Sbjct: 293 PEVSEGTEVTVKCEAHPRAKVTLN-GVPAQPLGPRAQ---------LLLKATPEDNGRSF 342
Query: 643 ECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLS 702
C AT + + + L P ++ P +
Sbjct: 343 SCSATLEVAGQLIHKN------QTRELRVLYG---------PRLDERDCPGNWT------ 381
Query: 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDT 762
E G+ ++ L +G TV +
Sbjct: 382 -WPENSQQTPMCQ--AWGNPLPELKCLKDGTFPLPIGESVTV-------------TRDLE 425
Query: 763 GVYTCRATNKWGQAEISVNLECVVWSP 789
G Y CRA + G+ V + V SP
Sbjct: 426 GTYLCRARSTQGEVTREVTVN--VLSP 450
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 69.5 bits (169), Expect = 2e-12
Identities = 40/352 (11%), Positives = 79/352 (22%), Gaps = 73/352 (20%)
Query: 45 EHALAGKYQRQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKN-DPNLKIEWI 103
L +TF P L L + ++ ++
Sbjct: 167 PQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLA 226
Query: 104 FNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKES 163
+ L + + ++ +T D TC T T+
Sbjct: 227 LGDQRLNPTVTYGNDSFSAKASVSVTAE-DEGTQRLTCAVILGNQSQETLQTV------- 278
Query: 164 LIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF 223
++ PA +SEG
Sbjct: 279 ----------------------TIYSFPAPNVILTK-------------PEVSEGTEVTV 303
Query: 224 EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNK 283
+ P +T+ + + L + T ++ ++C AT +
Sbjct: 304 KCEAHPR--AKVTLNGVPAQPLGPRAQ------------LLLKATPEDNGRSFSCSATLE 349
Query: 284 WGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHN 343
I N + P + C +P +++ +
Sbjct: 350 VAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAW--GNPLPELKCLKD 407
Query: 344 GKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
G + + V G Y+CRA + GE T+
Sbjct: 408 GTFPLP-------------IGESVTVTRDLEGTYLCRARSTQGEVTREVTVN 446
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 69.1 bits (168), Expect = 2e-12
Identities = 41/354 (11%), Positives = 72/354 (20%), Gaps = 67/354 (18%)
Query: 46 HALAGKYQRQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKN-DPNLKIEWIF 104
++ Q + P + + L L QVE NL + +
Sbjct: 66 YSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLR 125
Query: 105 NGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESL 164
K L+ A+ VT + D ++CR L
Sbjct: 126 GEKELKREPAVGEPAE---VTTTVLVRRDHHGANFSCRTELDLR----------PQGLEL 172
Query: 165 IERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE 224
E T P + P + L
Sbjct: 173 FENTSAPYQLQTFV-----------------------LPATPPQLVSPRVLEVDTQGTVV 209
Query: 225 ---ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVY--TCR 279
L PV V + + + T + ED G TC
Sbjct: 210 CSLDGLFPV--SEAQVHLALGDQRL---NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCA 264
Query: 280 ATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVE 339
E + P + E + +G +C P ++ +
Sbjct: 265 VILGNQSQETLQTVTIY-----SFPAPNVILTKPE-VSEGTEVTVKCEAHPR--AKVTLN 316
Query: 340 WFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRAT 393
+ + + + C A +
Sbjct: 317 GVPAQPLG------------PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKN 358
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450 | Back alignment and structure |
|---|
Score = 52.6 bits (125), Expect = 3e-07
Identities = 40/317 (12%), Positives = 66/317 (20%), Gaps = 61/317 (19%)
Query: 506 TQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL-PHGHRYRTFHDFGIVILDILYCYEE 564
L G S + L +E K+L G+ + + + ++ +
Sbjct: 9 VILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVY-----ELSNV-----Q 58
Query: 565 NSGVYECRATNKYGSDVTKASLKCVSK----------------TNLILE--------SQL 600
C + G K L NL L
Sbjct: 59 EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRAN 118
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
V K+L R + V +L + + + CR +
Sbjct: 119 LTVVLLRGEKEL---KREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFEN 175
Query: 661 CVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG 720
S + LP Q E L +SE
Sbjct: 176 -TSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSE-------------- 220
Query: 721 DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVY--TCRATNKWGQAEI 778
V + + + T + ED G TC E
Sbjct: 221 ---AQVHLALGDQRL---NPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQET 274
Query: 779 SVNLECVVWSPSQTKLV 795
+ + L
Sbjct: 275 LQTVTIYSFPAPNVILT 291
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 94.6 bits (234), Expect = 5e-21
Identities = 46/361 (12%), Positives = 91/361 (25%), Gaps = 72/361 (19%)
Query: 68 FIVPLKPEFKLGEAQPLHLE---------AQVEPKNDPNLKIEWIFNGKPLELGSRFKTT 118
+ + + ++ E +P ++ + L + W + + +L
Sbjct: 9 WGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFR 68
Query: 119 ADFGFV-----TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKG 173
+ L D G YTC N + + +
Sbjct: 69 LPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPL----------------- 111
Query: 174 EEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ 233
++ P + I
Sbjct: 112 -----EVV-------------QKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSV 153
Query: 234 TMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT----NKWGQAEI 289
T+ + I+ + + + L L I + G YTC T +
Sbjct: 154 KPTITWYMGCYKIQNFNNVI----PEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTR 209
Query: 290 SVNLECVDKSKGQPPKFTSHIKSLEGLK--DGDSAHFEC--TLTPVNDPELKVEWFHNGK 345
++ ++ V K P + G+ C + + D +V W +GK
Sbjct: 210 TLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGK 269
Query: 346 PIFH----------KNRVKMVSDFGFVVMDIAYVQSHD-SGEYVCRAWNKYGEDFTRATI 394
+ + + ++ I V S D YVC A + GE A +
Sbjct: 270 KPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKV 329
Query: 395 K 395
K
Sbjct: 330 K 330
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 82.6 bits (203), Expect = 5e-17
Identities = 46/341 (13%), Positives = 80/341 (23%), Gaps = 78/341 (22%)
Query: 510 EGQSAHFE---------ARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILD--- 557
E + A + + L + W++ + + +
Sbjct: 21 EDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDV 80
Query: 558 --ILYCYEENSGVYECRATNKYGSDVTKASLK---------------------------- 587
++G Y C N L+
Sbjct: 81 LWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRI 140
Query: 588 -CVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRA 646
C + S P + W+ K+ + + L L N+G Y C
Sbjct: 141 TCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMN----LSFLIALISNNGNYTCVV 196
Query: 647 TNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQH-LSNLS 705
T + L ++ PP S H +
Sbjct: 197 TYPENGRTFHLT------RTLTVKVVGSPKNA-----------VPPVIHSPNDHVVYEKE 239
Query: 706 EGEIAHF--EASLIPVGDQTMTVEFLYNGKPI----------EASHRIRTVHAFGMVVLE 753
GE + D V + +GK E+ RT +L
Sbjct: 240 PGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILS 299
Query: 754 ILGTKIEDTGV-YTCRATNKWGQAEISVNLECVVWSPSQTK 793
I ED Y C A + G+ + ++ V +P T
Sbjct: 300 IKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPAPRYTV 340
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 70.3 bits (171), Expect = 6e-13
Identities = 44/333 (13%), Positives = 82/333 (24%), Gaps = 48/333 (14%)
Query: 295 CVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTL---------TPVNDPELKVEWFHNGK 345
C D I+ E + A +C L + + L + W+ +
Sbjct: 6 CDDWGL----DTMRQIQVFED----EPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQ 57
Query: 346 PIFHKNRVKMVSDFGFVVMD-----IAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKG 400
+ + + + +D+G Y C N ++ K
Sbjct: 58 DRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKD 117
Query: 401 GVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEA- 459
+ ++ E + P + IT +++ + E
Sbjct: 118 SCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGM 177
Query: 460 --RLTPVTDPDL---VCELFSNFFPSQGQQP-----VAQAAPVAEAPKFITQISDVTQLK 509
+ C + +P P I +D +
Sbjct: 178 NLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYE 237
Query: 510 --EGQSAHF--EARLTPVTDPDLVVEWFYNGKKLPHG----------HRYRTFHDFGIVI 555
G+ + + D V W +GKK RT + I
Sbjct: 238 KEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQI 297
Query: 556 LDILYCYEENSGV-YECRATNKYGSDVTKASLK 587
L I E+ Y C A + G A +K
Sbjct: 298 LSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVK 330
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 8e-11
Identities = 42/265 (15%), Positives = 68/265 (25%), Gaps = 57/265 (21%)
Query: 59 PEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTT 118
+ F P+ + K + G + + I W ++ +
Sbjct: 116 KDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPE 175
Query: 119 ADFGFVTLDLTEVYDRDQGIYTCRA-WNLAGETFTST-TIYCSTKESLIERTQHPKGEEG 176
L + G YTC + G TF T T+ S
Sbjct: 176 GM----NLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGS------------- 218
Query: 177 LEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQH-LSNLSEGEIAHF--EASLIPVGDQ 233
++ PP S H + GE + D
Sbjct: 219 --------------------PKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDS 258
Query: 234 TMTVEFLYNGKPI----------EASHRIRTVHAFGMVVLEILGTKIEDTGV-YTCRATN 282
V + +GK E+ RT +L I ED Y C A +
Sbjct: 259 RNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARS 318
Query: 283 KWGQAEISVNLECVDKSKGQPPKFT 307
G+ + + K K P++T
Sbjct: 319 AKGEVAKAAKV----KQKVPAPRYT 339
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 5e-08
Identities = 32/223 (14%), Positives = 55/223 (24%), Gaps = 53/223 (23%)
Query: 486 VAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY 545
V Q +P + + + + + W+ K+ + +
Sbjct: 113 VVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNV 172
Query: 546 RTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS-------------------- 585
L L N+G Y C T +
Sbjct: 173 IPEGMN----LSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIH 228
Query: 586 -----------------LKCVSKTNLILESQLPEVEWFYNGKKLPHG----------HRY 618
+ C + +++S+ EV W +GKK
Sbjct: 229 SPNDHVVYEKEPGEELLIPCTVYFSFLMDSR-NEVWWTIDGKKPDDITIDVTINESISHS 287
Query: 619 RTFHDFGIVILDILYCYEENSGV-YECRATNKYGSDVTKASLK 660
RT + IL I E+ Y C A + G A +K
Sbjct: 288 RTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVK 330
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 93.2 bits (231), Expect = 5e-21
Identities = 43/334 (12%), Positives = 77/334 (23%), Gaps = 70/334 (20%)
Query: 69 IVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDL 128
+ P PE L + L + W + F L L
Sbjct: 3 VTPPGPELVLNVSSTFVLTCSGSAP------VVWERMSQEPPQEMAKAQDGTFSS-VLTL 55
Query: 129 TEVYDRDQGIYTCRAWNLAGE---TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEE 185
T + D G Y C + G I+
Sbjct: 56 TNLTGLDTGEYFCTHNDSRGLETDERKRLYIF---------------------------- 87
Query: 186 SLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKP 245
VPD + L+E V D + V
Sbjct: 88 --------VPDPT--VGFLPNDAEELFIFLTEITEITIPCR---VTDPQLVVTLHEKKGD 134
Query: 246 IEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPK 305
+ F + I + Y C+ T + + V + +
Sbjct: 135 VALPVPYDHQRGF---------SGIFEDRSYICKTTIGDREVDSDAYY--VYRLQVSSIN 183
Query: 306 FTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFH--KNRVKMVSDFGFVV 363
+ + ++ G++ C + + + EW + K + + D + +
Sbjct: 184 VSVNAVQTV-VRQGENITLMCIVI--GNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHI 240
Query: 364 MD---IAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
I + DSG Y C + I
Sbjct: 241 RSILHIPSAELEDSGTYTCNVTESVNDHQDEKAI 274
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 72.4 bits (177), Expect = 6e-14
Identities = 37/285 (12%), Positives = 69/285 (24%), Gaps = 68/285 (23%)
Query: 530 VEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS---- 585
V W ++ P F V L + ++G Y C + G + +
Sbjct: 28 VVWERMSQEPPQEMAKAQDGTFSSV-LTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYI 86
Query: 586 ------------------LKCVSKTNLILESQL----PEVEWFYNGKKLPHGHRYRTFHD 623
+ T + + ++ V + Y H
Sbjct: 87 FVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVPYD--HQ 144
Query: 624 FGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGV 683
G + Y C+ T + A +
Sbjct: 145 RGFSGI-------FEDRSYICKTTIGDREVDSDAYYVYRLQV------------------ 179
Query: 684 PDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT 743
+ + +GE +I G++ + E+ Y K T
Sbjct: 180 ------SSINVSVNAVQTV-VRQGENITLMCIVI--GNEVVNFEWTYPRKESGRLVEPVT 230
Query: 744 VHAFGMV-----VLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
M +L I ++ED+G YTC T + +
Sbjct: 231 DFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN 275
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 70.5 bits (172), Expect = 3e-13
Identities = 41/305 (13%), Positives = 78/305 (25%), Gaps = 82/305 (26%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
+ C+ + V W + + F V+ + + D+GEY
Sbjct: 15 SSTFVLTCSGSA------PVVWERMSQEPPQEMAKAQDGTFSSVLT-LTNLTGLDTGEYF 67
Query: 379 CRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPK 438
C + G + +Y+ P
Sbjct: 68 CTHNDSRGLETDERKR-------LYIFVPDPTVG-------------------------- 94
Query: 439 FITQISD--VTQLKEGQSAHFEARLTPVTDPDLVCELFSN---------FFPSQGQQPVA 487
F+ ++ L E R VTDP LV L + +G +
Sbjct: 95 FLPNDAEELFIFLTEITEITIPCR---VTDPQLVVTLHEKKGDVALPVPYDHQRGFSGIF 151
Query: 488 QAAP--------------------VAEAPKFITQISDVTQ-LKEGQSAHFEARLTPVTDP 526
+ + ++ V +++G++ + +
Sbjct: 152 EDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVI--GNE 209
Query: 527 DLVVEWFYNGKKLPHGHRYRTFHDFGIV-----ILDILYCYEENSGVYECRATNKYGSDV 581
+ EW Y K+ T + IL I E+SG Y C T
Sbjct: 210 VVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQ 269
Query: 582 TKASL 586
+ ++
Sbjct: 270 DEKAI 274
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 2e-12
Identities = 34/197 (17%), Positives = 51/197 (25%), Gaps = 52/197 (26%)
Query: 498 FITQISD--VTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
F+ ++ L E R VTDP LVV + Y H G
Sbjct: 95 FLPNDAEELFIFLTEITEITIPCR---VTDPQLVVTLHEKKGDVALPVPYD--HQRGFSG 149
Query: 556 LDILYCYEENSGVYECRATNKYGSDVT----------------------------KASLK 587
+ Y C+ T + +L
Sbjct: 150 I-------FEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLM 202
Query: 588 CVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIV-----ILDILYCYEENSGVY 642
C+ N ++ EW Y K+ T + IL I E+SG Y
Sbjct: 203 CIVIGN-----EVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTY 257
Query: 643 ECRATNKYGSDVTKASL 659
C T + ++
Sbjct: 258 TCNVTESVNDHQDEKAI 274
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 1e-06
Identities = 29/205 (14%), Positives = 51/205 (24%), Gaps = 55/205 (26%)
Query: 95 DPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTST 154
DP L + + L + GF + + Y C+ E
Sbjct: 121 DPQLVVTLHEKKGDVALPVPYDHQ--RGFSGIF-------EDRSYICKTTIGDREV---- 167
Query: 155 TIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSN 214
+ + R Q +
Sbjct: 168 ----DSDAYYVYRLQVS------------------------------SINVSVNAVQTV- 192
Query: 215 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV-----VLEILGTK 269
+ +GE +I G++ + E+ Y K T M +L I +
Sbjct: 193 VRQGENITLMCIVI--GNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAE 250
Query: 270 IEDTGVYTCRATNKWGQAEISVNLE 294
+ED+G YTC T + +
Sbjct: 251 LEDSGTYTCNVTESVNDHQDEKAIN 275
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 2e-06
Identities = 26/207 (12%), Positives = 45/207 (21%), Gaps = 43/207 (20%)
Query: 584 ASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYE 643
L C V W ++ P F V L + ++G Y
Sbjct: 18 FVLTCSGS---------APVVWERMSQEPPQEMAKAQDGTFSSV-LTLTNLTGLDTGEYF 67
Query: 644 CRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSN 703
C + G + + + VPD +
Sbjct: 68 CTHNDSRGLETDERKRLYIF-------------------VPDPT--VGFLPNDAEELFIF 106
Query: 704 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTG 763
L+E V D + V + F + I +
Sbjct: 107 LTEITEITIPCR---VTDPQLVVTLHEKKGDVALPVPYDHQRGF---------SGIFEDR 154
Query: 764 VYTCRATNKWGQAEISVNLECVVWSPS 790
Y C+ T + + + S
Sbjct: 155 SYICKTTIGDREVDSDAYYVYRLQVSS 181
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 6e-06
Identities = 13/98 (13%), Positives = 25/98 (25%), Gaps = 7/98 (7%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV 124
+ + + + + + + L V + + EW + K T
Sbjct: 180 SSINVSVNAVQTVVRQGENITLMCIV--IGNEVVNFEWTYPRKESGRLVEPVTDFLLDMP 237
Query: 125 -----TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
L + D G YTC + I
Sbjct: 238 YHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAIN 275
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 91.7 bits (227), Expect = 2e-20
Identities = 59/354 (16%), Positives = 92/354 (25%), Gaps = 73/354 (20%)
Query: 55 QPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSR 114
QPS + P I P + E + L L + W F E+
Sbjct: 2 QPSASPGEPSPPS-IHPAQSELIVEAGDTLSLTCIDPDF------VRWTFKTYFNEMVEN 54
Query: 115 FKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGE 174
K + G YTC N +S ++ L G+
Sbjct: 55 KKNE-------WIQEKAEATRTGTYTCSNSNGLT---SSIYVFVRDPAKLFLVGLPLFGK 104
Query: 175 EGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQT 234
E A V + + E
Sbjct: 105 ED-------------SDALVRCPLTDPQVS--------------QYSLIE---------- 127
Query: 235 MTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+GK + G+ + + + C A G S
Sbjct: 128 ------CDGKSLPTDLTFVPNPKAGITIKNV--KRAYHRLCVRCAAQRD-GTWLHSDKFT 178
Query: 295 -CVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRV 353
V ++ P + S LK GD+ CT+ V+ + W H +V
Sbjct: 179 LKVREAIKAIPVVSVPETSHL-LKKGDTFTVVCTIKDVSTS-VNSMWLKMNPQPQHIAQV 236
Query: 354 KMVSDFGFV-------VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKG 400
K S + I+ + DSG ++C A N +G T+K KG
Sbjct: 237 KHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG 290
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 82.1 bits (202), Expect = 3e-17
Identities = 42/334 (12%), Positives = 86/334 (25%), Gaps = 79/334 (23%)
Query: 480 SQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL 539
SQ + +P P S++ ++ G + V W +
Sbjct: 1 SQPSASPGEPSP----PSIHPAQSELI-VEAGDTLSLTCIDPDF------VRWTFKTYFN 49
Query: 540 PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDV------------------ 581
+ +G Y C +N S +
Sbjct: 50 EMVENKKN-------EWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLF 102
Query: 582 ----TKASLKCVSKTNLILESQLPEVEWF-YNGKKLPHGHRYRTFHDFGIVILDILYCYE 636
+ A ++C Q+ + +GK LP + GI I ++
Sbjct: 103 GKEDSDALVRCPLTDP-----QVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKR--A 155
Query: 637 ENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTS 696
+ C A + V + P +
Sbjct: 156 YHRLCVRCAAQRDGTWLHSDKFTLKVREAIKA----------------------IPVVSV 193
Query: 697 EFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV------ 750
L +G+ + I ++ +L + +++
Sbjct: 194 PETSHL-LKKGDTFTVVCT-IKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQ 251
Query: 751 -VLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
L I +++D+GV+ C A N +G A ++ L+
Sbjct: 252 ETLTISSARVDDSGVFMCYANNTFGSANVTTTLK 285
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290 | Back alignment and structure |
|---|
Score = 59.4 bits (143), Expect = 1e-09
Identities = 39/303 (12%), Positives = 78/303 (25%), Gaps = 64/303 (21%)
Query: 16 TLKCLGQKDIY-----LETQHPMGAAGLEKVQEVEHALAGKYQ-RQPSGPEET-----FA 64
+L C+ + + ++ E G Y +G +
Sbjct: 31 SLTCIDPDFVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRD 90
Query: 65 KPVFIVPLKPEF-KLGEAQPLHLEAQVEPKNDPNLKIEWI-FNGKPLELGSRFKTTADFG 122
+ P F K + + I +GK L F G
Sbjct: 91 PAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQ----YSLIECDGKSLPTDLTFVPNPKAG 146
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQD 182
++ Y + C A G S ++ + K
Sbjct: 147 ITIKNVKRAYH--RLCVRCAAQR-DGTWLHSDKFT-------LKVREAIKA--------- 187
Query: 183 LEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 242
P + L +G+ + I ++ +L
Sbjct: 188 -------------------IPVVSVPETSHL-LKKGDTFTVVCT-IKDVSTSVNSMWLKM 226
Query: 243 GKPIEASHRIRTVHAFGMV-------VLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 295
+ +++ L I +++D+GV+ C A N +G A ++ L+
Sbjct: 227 NPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286
Query: 296 VDK 298
V+K
Sbjct: 287 VEK 289
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 88.0 bits (218), Expect = 2e-20
Identities = 30/128 (23%), Positives = 51/128 (39%), Gaps = 5/128 (3%)
Query: 268 TKIEDTGVYTCRATNKWGQAEISVNLEC-VDKSKGQPPKFTSHIKSLEGLKDGDSAHFEC 326
+ + +G N LE ++ P FT I +E + +G +A F+C
Sbjct: 5 SGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVV-EGSAARFDC 63
Query: 327 TLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD-FGFVVMDIAYVQSHDSGEYVCRAWNKY 385
+ P+ +V WF + P+ ++ D G + I+ V D +Y C+A N
Sbjct: 64 KVEG--YPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSL 121
Query: 386 GEDFTRAT 393
GE A
Sbjct: 122 GEATCTAE 129
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 1e-17
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 4/98 (4%)
Query: 491 PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR-TFH 549
P F I D+ + EG +A F+ ++ PD V WF + + ++ +
Sbjct: 37 KPHVKPYFTKTILDME-VVEGSAARFDCKVEG--YPDPEVMWFKDDNPVKESRHFQIDYD 93
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
+ G L I ++ Y C+A N G A L
Sbjct: 94 EEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELL 131
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 2e-14
Identities = 28/126 (22%), Positives = 51/126 (40%), Gaps = 4/126 (3%)
Query: 55 QPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSR 114
+ E+ KP F + ++ E + +VE P+ ++ W + P++
Sbjct: 31 EEVAEEKPHVKPYFTKTILD-MEVVEGSAARFDCKVEG--YPDPEVMWFKDDNPVKESRH 87
Query: 115 FKTTAD-FGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKG 173
F+ D G +L ++EV D YTC+A N GE + + T E +
Sbjct: 88 FQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEGEGEE 147
Query: 174 EEGLEK 179
+E E+
Sbjct: 148 DEEEEE 153
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 2e-13
Identities = 29/146 (19%), Positives = 47/146 (32%), Gaps = 25/146 (17%)
Query: 639 SGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEF 698
SG N + A L+ V++ + P FT
Sbjct: 10 SGSSPTSPINANKVENEDAFLEEVAEE---------------------KPHVKPYFTKTI 48
Query: 699 QHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR-TVHAFGMVVLEILGT 757
+ + EG A F+ + G V + + P++ S + G L I
Sbjct: 49 LDME-VVEGSAARFDCKV--EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEV 105
Query: 758 KIEDTGVYTCRATNKWGQAEISVNLE 783
+D YTC+A N G+A + L
Sbjct: 106 CGDDDAKYTCKAVNSLGEATCTAELL 131
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 66.4 bits (162), Expect = 5e-13
Identities = 26/122 (21%), Positives = 46/122 (37%), Gaps = 6/122 (4%)
Query: 194 VPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR 253
V + + P FT + + EG A F+ + G V + + P++ S +
Sbjct: 33 VAEEKPHVKPYFTKTILDME-VVEGSAARFDCKV--EGYPDPEVMWFKDDNPVKESRHFQ 89
Query: 254 -TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKS 312
G L I +D YTC+A N G+A + L ++ G+ + +
Sbjct: 90 IDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV--ETMGKEGEGEGEGEE 147
Query: 313 LE 314
E
Sbjct: 148 DE 149
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 2e-12
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 601 PEVEWFYNGKKLPHGHRYR-TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
PEV WF + + ++ + + G L I ++ Y C+A N G A L
Sbjct: 71 PEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAEL 130
Query: 660 K 660
Sbjct: 131 L 131
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 88.5 bits (219), Expect = 4e-20
Identities = 32/172 (18%), Positives = 57/172 (33%), Gaps = 16/172 (9%)
Query: 231 GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 290
T + N R+ + + EDTG YTC + + G +
Sbjct: 42 QGDTTRLVCYNNKITASYEDRVTFLPT----GITFKSVTREDTGTYTCMVSEEGGNSYGE 97
Query: 291 VNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHK 350
V ++ + PP + G+ A C+ + P + WF +G +
Sbjct: 98 VKVKLIVLV---PPSKPTVNIPSS-ATIGNRAVLTCSEQDGS-PPSEYTWFKDGIVMPTN 152
Query: 351 NRVKMVSDFGFVVMD-------IAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ V++ + + D+GEY C A N YG T ++
Sbjct: 153 PKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 204
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 76.2 bits (187), Expect = 7e-16
Identities = 38/226 (16%), Positives = 61/226 (26%), Gaps = 56/226 (24%)
Query: 576 KYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYR-----------TFHDF 624
+ V L C P VEW ++ Y TF
Sbjct: 17 PENNPVK---LSCAYSGF-----SSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPT 68
Query: 625 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVP 684
GI + E++G Y C + + G+ + +K L +P
Sbjct: 69 GITFKSVT---REDTGTYTCMVSEEGGNSYGEVKVK--------LIVLVP---------- 107
Query: 685 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTV 744
P + S + G A S G + +G + + +
Sbjct: 108 -------PSKPTVNIPSS-ATIGNRAVLTCS-EQDGSPPSEYTWFKDGIVMPTNPKSTRA 158
Query: 745 HAFGMVV-------LEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
+ V L DTG Y+C A N +G S +
Sbjct: 159 FSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 204
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 7e-14
Identities = 30/209 (14%), Positives = 60/209 (28%), Gaps = 46/209 (22%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR------ 546
A + ++ E + VEW ++ Y
Sbjct: 1 AMGSVTVHSSEPEVRIPENNPVKLSCAYS--GFSSPRVEWKFDQGDTTRLVCYNNKITAS 58
Query: 547 -----TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK-----------CVS 590
TF GI + E++G Y C + + G+ + +K
Sbjct: 59 YEDRVTFLPTGITFKSVT---REDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNI 115
Query: 591 KTNLILESQL------------PEVEWFYNGKKLPHGHRYRTFHDFGIVI-------LDI 631
++ + ++ E WF +G +P + + L
Sbjct: 116 PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVF 175
Query: 632 LYCYEENSGVYECRATNKYGSDVTKASLK 660
++G Y C A N YG+ +T +++
Sbjct: 176 DPLSASDTGEYSCEARNGYGTPMTSNAVR 204
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 2e-13
Identities = 29/215 (13%), Positives = 50/215 (23%), Gaps = 56/215 (26%)
Query: 95 DPNLKIEWIFNGKPLELGSRFKTTADFGFV--------TLDLTEVYDRDQGIYTCRAWNL 146
+ ++EW F+ + + + V D G YTC
Sbjct: 31 FSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEE 90
Query: 147 AGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFT 206
G ++ + PP
Sbjct: 91 GGNSYGEVKVKLIVLV---------------------------------------PPSKP 111
Query: 207 SEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV---- 262
+ S + G A S G + +G + + + + V
Sbjct: 112 TVNIPSS-ATIGNRAVLTCS-EQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPT 169
Query: 263 ---LEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
L DTG Y+C A N +G S +
Sbjct: 170 TGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 204
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 5e-08
Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 9/103 (8%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF 551
V P T + G A P WF +G +P +
Sbjct: 104 VLVPPSKPTVNIPSS-ATIGNRAVLTCSEQ-DGSPPSEYTWFKDGIVMPTNPKSTRAFSN 161
Query: 552 GIVI-------LDILYCYEENSGVYECRATNKYGSDVTKASLK 587
+ L ++G Y C A N YG+ +T +++
Sbjct: 162 SSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 204
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 2e-06
Identities = 17/101 (16%), Positives = 24/101 (23%), Gaps = 9/101 (8%)
Query: 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
P P L E P + W +G + +
Sbjct: 105 LVPPSKPTVNIPS-SATIGNRAVLTCS-EQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNS 162
Query: 123 FV-------TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L + D G Y+C A N G TS +
Sbjct: 163 SYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV 203
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 720 GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 779
T + N R+ + + EDTG YTC + + G +
Sbjct: 42 QGDTTRLVCYNNKITASYEDRVTFLPT----GITFKSVTREDTGTYTCMVSEEGGNSYGE 97
Query: 780 VNLECVVWSP 789
V ++ +V P
Sbjct: 98 VKVKLIVLVP 107
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 6e-20
Identities = 30/199 (15%), Positives = 60/199 (30%), Gaps = 32/199 (16%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
+ L+ +S+G+ S G + ++++ +G ++ ++ +
Sbjct: 2 GLKLMGAPVKLT-VSQGQPVKLNCS--VEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHW 58
Query: 262 V--LEILGTKIEDTGVYTCRATNKWGQ-----AEISVNLECVDKSKGQPPKFTSHIKSLE 314
+ L + + D G Y C+ + ++V P FT K L
Sbjct: 59 IGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE---------GVPFFTVEPKDLA 109
Query: 315 GLKDGDSAHFECTLTPVNDPE-LKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHD 373
+ C V PE + + W+ I V +
Sbjct: 110 -VPPNAPFQLSC--EAVGPPEPVTIVWWRGTTKIGGPAPSPSV---------LNVTGVTQ 157
Query: 374 SGEYVCRAWNKYGEDFTRA 392
S + C A N G +R
Sbjct: 158 STMFSCEAHNLKGLASSRT 176
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 6e-16
Identities = 27/180 (15%), Positives = 58/180 (32%), Gaps = 41/180 (22%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVI--LDILYCYEENSGVYECRATNKYGSDVTKAS 658
P+++W +G + + + I L + ++G Y C+ + +++++
Sbjct: 32 PDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQ-- 89
Query: 659 LKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIP 718
L +E P FT E + L +
Sbjct: 90 -----PVWLTVEG-------------------VPFFTVEPKDL-AVPPNAPFQLSCE--A 122
Query: 719 VGD-QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 777
VG + +T+ + I +V L + G + + +++C A N G A
Sbjct: 123 VGPPEPVTIVWWRGTTKIGGPAPSPSV-------LNVTG--VTQSTMFSCEAHNLKGLAS 173
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 4e-14
Identities = 25/195 (12%), Positives = 58/195 (29%), Gaps = 52/195 (26%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIV 554
K + +T + +GQ + + +PD ++W +G + + +
Sbjct: 2 GLKLMGAPVKLT-VSQGQPVKLNCSVEGMEEPD--IQWVKDGAVVQNLDQLYIPVSEQHW 58
Query: 555 I--LDILYCYEENSGVYECRATNKYGSDVTK--------------------------ASL 586
I L + ++G Y C+ + +++++ L
Sbjct: 59 IGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQL 118
Query: 587 KCVSKTNLILESQLPE---VEWFYNGKKLPH-GHRYRTFHDFGIVILDILYCYEENSGVY 642
C + PE + W+ K+ + G+ S ++
Sbjct: 119 SCEAVGP-------PEPVTIVWWRGTTKIGGPAPSPSVLNVTGV----------TQSTMF 161
Query: 643 ECRATNKYGSDVTKA 657
C A N G ++
Sbjct: 162 SCEAHNLKGLASSRT 176
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 1e-12
Identities = 34/228 (14%), Positives = 64/228 (28%), Gaps = 58/228 (25%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
A + + + + QP+ L VE I+W+ +G ++ +
Sbjct: 1 AGLKLMGAPV-KLTVSQGQPVKLNCSVE--GMEEPDIQWVKDGAVVQNLDQLYIPVSEQH 57
Query: 124 V--TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQ 181
L L V D G Y C+ + S ++ + +
Sbjct: 58 WIGFLSLKSVERSDAGRYWCQVEDGGETE-ISQPVWLTVEG------------------- 97
Query: 182 DLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGD-QTMTVEFL 240
P FT E + L + VG + +T+ +
Sbjct: 98 --------------------VPFFTVEPKDL-AVPPNAPFQLSCE--AVGPPEPVTIVWW 134
Query: 241 YNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 288
I + VL + G + + +++C A N G A
Sbjct: 135 RGTTKIGGPAPSPS-------VLNVTG--VTQSTMFSCEAHNLKGLAS 173
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 3e-07
Identities = 15/98 (15%), Positives = 27/98 (27%), Gaps = 21/98 (21%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLT----PVTDPDLVVEWFYNGKKLPH-GHRYR 546
V P F + D+ + PVT + W+ K+
Sbjct: 95 VEGVPFFTVEPKDLA-VPPNAPFQLSCEAVGPPEPVT-----IVWWRGTTKIGGPAPSPS 148
Query: 547 TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584
+ G+ S ++ C A N G ++
Sbjct: 149 VLNVTGV----------TQSTMFSCEAHNLKGLASSRT 176
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 2e-06
Identities = 14/101 (13%), Positives = 36/101 (35%), Gaps = 6/101 (5%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
+ L+ +S+G+ S G + ++++ +G ++ ++ +
Sbjct: 2 GLKLMGAPVKLT-VSQGQPVKLNCS--VEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHW 58
Query: 751 V--LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSP 789
+ L + + D G Y C+ + IS + V
Sbjct: 59 IGFLSLKSVERSDAGRYWCQVEDGGETE-ISQPVWLTVEGV 98
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 13/92 (14%)
Query: 64 AKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
P F V K L EA P+ + I W +
Sbjct: 97 GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEP---VTIVWWRGTTKI-------GGPAPS 146
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTST 154
L++T V +++C A NL G + T
Sbjct: 147 PSVLNVTGV--TQSTMFSCEAHNLKGLASSRT 176
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 87.6 bits (216), Expect = 7e-20
Identities = 26/206 (12%), Positives = 60/206 (29%), Gaps = 29/206 (14%)
Query: 575 NKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYC 634
+ V L C +++ + WF +GK + + + G D
Sbjct: 15 YQEDGSVL---LTC--------DAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKD---- 59
Query: 635 YEENSGVYECRATNKYGSDVTKASLKCV---SKTNLILESQLPELRRQPAGVPDSEDGRP 691
G+Y+C+ + + +K + + + + G +E+
Sbjct: 60 ---PRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGG 116
Query: 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV 751
T +S G P + + +N K I + + + +
Sbjct: 117 ITQTPYKVSIS----GTTVILTCPQYP----GSEILWQHNDKNIGGDEDDKNIGSDEDHL 168
Query: 752 LEILGTKIEDTGVYTCRATNKWGQAE 777
+++E +G Y C +
Sbjct: 169 SLKEFSELEQSGYYVCYPRGSKPEDA 194
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 83.4 bits (205), Expect = 2e-18
Identities = 26/177 (14%), Positives = 44/177 (24%), Gaps = 24/177 (13%)
Query: 231 GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA--- 287
+ + + +GK I + G + G+Y C+ + +
Sbjct: 26 DAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKD-------PRGMYQCKGSQNKSKPLQV 78
Query: 288 -----EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECT---------LTPVND 333
+ K S + G LT
Sbjct: 79 YYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQY 138
Query: 334 PELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFT 390
P ++ W HN K I K + + + + SG YVC ED
Sbjct: 139 PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDAN 195
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 82.6 bits (203), Expect = 4e-18
Identities = 21/195 (10%), Positives = 52/195 (26%), Gaps = 26/195 (13%)
Query: 94 NDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTS 153
+ I W +GK + + K + G D +G+Y C+ +
Sbjct: 26 DAEAKNITWFKDGKMIGFLTEDKKKWNLGSNAKD-------PRGMYQCKGSQNKSKPLQV 78
Query: 154 TTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLS 213
S ++ + + +++ + G + +
Sbjct: 79 YYRMGSADDAKKDAA--------KKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSI---- 126
Query: 214 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDT 273
G P + + +N K I + + + + +++E +
Sbjct: 127 ---SGTTVILTCPQYP----GSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQS 179
Query: 274 GVYTCRATNKWGQAE 288
G Y C +
Sbjct: 180 GYYVCYPRGSKPEDA 194
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 73.4 bits (179), Expect = 6e-15
Identities = 26/197 (13%), Positives = 45/197 (22%), Gaps = 57/197 (28%)
Query: 504 DVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYE 563
V +E S + WF +GK + + + G D
Sbjct: 11 KVYDYQEDGSVLLTCDA-----EAKNITWFKDGKMIGFLTEDKKKWNLGSNAKD------ 59
Query: 564 ENSGVYECRATNKYGSDVTKASLKC----------------------------------- 588
G+Y+C+ + +
Sbjct: 60 -PRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGIT 118
Query: 589 -------VSKTNLILE---SQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEEN 638
+S T +IL E+ W +N K + + + + E
Sbjct: 119 QTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQ 178
Query: 639 SGVYECRATNKYGSDVT 655
SG Y C D
Sbjct: 179 SGYYVCYPRGSKPEDAN 195
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 62.6 bits (151), Expect = 3e-11
Identities = 24/146 (16%), Positives = 42/146 (28%), Gaps = 9/146 (6%)
Query: 14 SGTLKCLGQKDI--YLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEETFAKPVFIVP 71
G +C G ++ L+ + MG+A K + A K + G + + I
Sbjct: 61 RGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDG-SDGNEEMGGITQ 119
Query: 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEV 131
+ + + L P ++ I W N K + K
Sbjct: 120 TPYKVSI-SGTTVILTCPQYPGSE----ILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFS 174
Query: 132 YDRDQGIYTCRAWNLAGETFTSTTIY 157
G Y C E + +Y
Sbjct: 175 ELEQSGYYVCYPRGSKPED-ANFYLY 199
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 2e-09
Identities = 17/116 (14%), Positives = 27/116 (23%), Gaps = 10/116 (8%)
Query: 477 FFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE----------ARLTPVTDP 526
+ AA +A K + +E LT P
Sbjct: 80 YRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYP 139
Query: 527 DLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVT 582
+ W +N K + + + + E SG Y C D
Sbjct: 140 GSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDAN 195
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 1e-19
Identities = 28/206 (13%), Positives = 57/206 (27%), Gaps = 36/206 (17%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
F +++ + G + V + V +L +G+ +E + +T G
Sbjct: 2 ESPFVGNPGNIT-GARGLTGTLRCQ-LQVQGEPPEVHWLRDGQILELADSTQTQVPLGED 59
Query: 262 ---------VLEILGTKIEDTGVYTCRATNKWGQ-----AEISVNLECVDKSKGQPPKFT 307
L I ++ DTG Y C + + P F
Sbjct: 60 EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLE---------GLPYFL 110
Query: 308 SHIKSLEGLKDGDSAHFECTLTPVNDPE-LKVEWFHNGKPIFHKNRVKMVSDFGFVVMDI 366
+ + + C PE + + W + P+ + +
Sbjct: 111 EEPEDRT-VAANTPFNLSC--QAQGPPEPVDLLWLQDAVPLATAPGHGPQR-----SLHV 162
Query: 367 AYVQSHDSGEYVCRAWNKYGEDFTRA 392
+ + + C A N G +R
Sbjct: 163 PGLN--KTSSFSCEAHNAKGVTTSRT 186
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 77.2 bits (190), Expect = 2e-16
Identities = 33/294 (11%), Positives = 68/294 (23%), Gaps = 115/294 (39%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
+ F + ++ G + G + C L V +V W +G+ + + + G
Sbjct: 1 EESPFVGNPGNITGAR-GLTGTLRCQL-QVQGEPPEVHWLRDGQILELADSTQTQVPLGE 58
Query: 362 VVMD---------IAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESL 412
D I +Q D+G+Y C + + ++
Sbjct: 59 DEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQP-------------------- 98
Query: 413 ARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCE 472
+ + P F+ + D T + + C+
Sbjct: 99 GYVG----------------LEGLPYFLEEPEDRT-VAANTPFNLS------------CQ 129
Query: 473 LFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEW 532
AQ P P + W
Sbjct: 130 --------------AQGPP---EPVDLL-------------------------------W 141
Query: 533 FYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+ L + + L + + C A N G ++ +
Sbjct: 142 LQDAVPLATAPGHGPQRSLHVPGL-------NKTSSFSCEAHNAKGVTTSRTAT 188
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 1e-13
Identities = 30/197 (15%), Positives = 55/197 (27%), Gaps = 40/197 (20%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGI 553
E F+ ++T G + +L V V W +G+ L +T G
Sbjct: 1 EESPFVGNPGNIT-GARGLTGTLRCQL-QVQGEPPEVHWLRDGQILELADSTQTQVPLGE 58
Query: 554 V---------ILDILYCYEENSGVYECRATNKYGSDVTKA----------------SLKC 588
L I ++G Y+C + + V++
Sbjct: 59 DEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTV 118
Query: 589 VSKTNLILESQ---LPE---VEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVY 642
+ T L Q PE + W + L + + L + +
Sbjct: 119 AANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGL-------NKTSSF 171
Query: 643 ECRATNKYGSDVTKASL 659
C A N G ++ +
Sbjct: 172 SCEAHNAKGVTTSRTAT 188
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 4e-13
Identities = 29/188 (15%), Positives = 56/188 (29%), Gaps = 48/188 (25%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIV---------ILDILYCYEENSGVYECRATNKYG 651
PEV W +G+ L +T G L I ++G Y+C +
Sbjct: 33 PEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQ 92
Query: 652 SDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAH 711
+ V++ + LE P F E + ++ +
Sbjct: 93 TFVSQ-------PGYVGLEG-------------------LPYFLEEPEDR-TVAANTPFN 125
Query: 712 F--EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769
+A P + + + +L + P+ + L + + T ++C A
Sbjct: 126 LSCQAQGPP---EPVDLLWLQDAVPLATAPGHGPQR-----SLHV--PGLNKTSSFSCEA 175
Query: 770 TNKWGQAE 777
N G
Sbjct: 176 HNAKGVTT 183
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 2e-11
Identities = 34/235 (14%), Positives = 65/235 (27%), Gaps = 66/235 (28%)
Query: 66 PVFIVPLKPEFKLGEA-QPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV 124
F+ P G L Q++ + +P ++ W+ +G+ LEL +T G
Sbjct: 3 SPFVG--NPGNITGARGLTGTLRCQLQVQGEP-PEVHWLRDGQILELADSTQTQVPLGED 59
Query: 125 ---------TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEE 175
L +T + D G Y C + S Y +
Sbjct: 60 EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTF-VSQPGYVGLEG------------- 105
Query: 176 GLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQ 233
P F E + ++ + +A P +
Sbjct: 106 --------------------------LPYFLEEPEDR-TVAANTPFNLSCQAQGPP---E 135
Query: 234 TMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 288
+ + +L + P+ + L + + T ++C A N G
Sbjct: 136 PVDLLWLQDAVPLATAPGHGPQR-----SLHV--PGLNKTSSFSCEAHNAKGVTT 183
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 1e-06
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 11/96 (11%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
F +++ + G + V + V +L +G+ +E + +T G
Sbjct: 2 ESPFVGNPGNIT-GARGLTGTLRCQ-LQVQGEPPEVHWLRDGQILELADSTQTQVPLGED 59
Query: 751 ---------VLEILGTKIEDTGVYTCRATNKWGQAE 777
L I ++ DTG Y C
Sbjct: 60 EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFV 95
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 1e-04
Identities = 16/93 (17%), Positives = 27/93 (29%), Gaps = 11/93 (11%)
Query: 63 FAKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
P F+ + L +AQ P+ + + W+ + PL
Sbjct: 104 EGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEP---VDLLWLQDAVPLATAPG------- 153
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTST 154
L ++C A N G T + T
Sbjct: 154 HGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRT 186
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 89.1 bits (220), Expect = 3e-19
Identities = 46/311 (14%), Positives = 85/311 (27%), Gaps = 63/311 (20%)
Query: 509 KEGQSAHFEARLTP-------VTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYC 561
G+ + D D VV W GK +R + + I +
Sbjct: 42 ALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNR--RVKNGDLWIANYTS- 98
Query: 562 YEENSGVYECRATNKYGSDVTKASLKCVSKTNLILE----------------------SQ 599
++ Y C T K G V + K +
Sbjct: 99 -NDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKH 157
Query: 600 LPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
+ W+ N ++L + ++I + E+SG Y+C
Sbjct: 158 YNNITWYKNNQELIIDGTKYSQSGQNLIIHNP---ELEDSGRYDCYVHYDDVR------- 207
Query: 660 KCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF--EASLI 717
N I+ S+ L P+ + P+ N++ GE A+ A
Sbjct: 208 ----IKNDIVVSRCKILTVIPSQDHRFKLILDPK--------INVTIGEPANITCTAVST 255
Query: 718 PVGDQTMTVEFLYNGKPIEAS-----HRIRTVHAFGMVVLEILGTKIEDTG-VYTCRATN 771
+ + +++ I + + L E G YTCR N
Sbjct: 256 SLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHN 315
Query: 772 KWGQAEISVNL 782
+ ++ +
Sbjct: 316 YYFDKTLTTTV 326
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 88.7 bits (219), Expect = 3e-19
Identities = 41/315 (13%), Positives = 79/315 (25%), Gaps = 60/315 (19%)
Query: 92 PKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETF 151
ND + + W GK +R G + + D Y C G+
Sbjct: 62 RYNDKDNVVNWEKIGKTRRPLNRRVKN---GDLWIANYTSND-SHRRYLCTVTTKNGDCV 117
Query: 152 TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQH 211
+ PP E
Sbjct: 118 QGIV------------------------------RSHIRK----------PPSCIPETYE 137
Query: 212 LSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIE 271
L + I + + N + + + + L I ++E
Sbjct: 138 LG-THDKYGIDLY-CGILYAKHYNNITWYKNNQELIIDGT-KYSQSGQN--LIIHNPELE 192
Query: 272 DTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLE---GLKDGDSAHFEC-- 326
D+G Y C + + + + P + L+ + G+ A+ C
Sbjct: 193 DSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTA 252
Query: 327 TLTPVNDPELKVEWFHNGKPI--FHKNRVKMVSDFGFVVMD---IAYVQSHDSGE-YVCR 380
T + ++ ++W + I +++ G + V G Y CR
Sbjct: 253 VSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCR 312
Query: 381 AWNKYGEDFTRATIK 395
N Y + T+
Sbjct: 313 GHNYYFDKTLTTTVV 327
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 76.0 bits (186), Expect = 5e-15
Identities = 39/328 (11%), Positives = 67/328 (20%), Gaps = 92/328 (28%)
Query: 262 VLEILGTKIEDTG-VYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGD 320
L I D+ Y C T K G + + K PP L D
Sbjct: 90 DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRK----PPSCIPETYELG-THDKY 144
Query: 321 SAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCR 380
C + + W+ N + + K ++ I + DSG Y C
Sbjct: 145 GIDLYCGILY-AKHYNNITWYKNNQELIIDGT-KYSQSGQNLI--IHNPELEDSGRYDCY 200
Query: 381 AWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFI 440
R + + ++ +F
Sbjct: 201 VHYDDV-----------------------------RIKNDIVVSRCKILTVIPSQDHRFK 231
Query: 441 TQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFIT 500
+ + G+ A+ C A + + I
Sbjct: 232 LILDPKINVTIGEPANIT------------CT--------------AVSTSLLVDDVLID 265
Query: 501 QISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILY 560
+ + + + L
Sbjct: 266 WENPSGWIIGLDFGVY--------------------------SILTSSGGITEATLYFEN 299
Query: 561 CYEENSG-VYECRATNKYGSDVTKASLK 587
EE G Y CR N Y ++
Sbjct: 300 VTEEYIGNTYTCRGHNYYFDKTLTTTVV 327
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 72.2 bits (176), Expect = 1e-13
Identities = 32/240 (13%), Positives = 57/240 (23%), Gaps = 45/240 (18%)
Query: 62 TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
KP +P E + + L + I W N + L + K +
Sbjct: 124 HIRKPPSCIPETYELGTHDKYGIDLYCGI-LYAKHYNNITWYKNNQELIIDGT-KYSQSG 181
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQ 181
L + D G Y C + ++I H
Sbjct: 182 Q--NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHR---------- 229
Query: 182 DLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEF 239
F N++ GE A+ A + + +++
Sbjct: 230 -----------------------FKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDW 266
Query: 240 LYNGKPIEAS-----HRIRTVHAFGMVVLEILGTKIEDTG-VYTCRATNKWGQAEISVNL 293
I + + L E G YTCR N + ++ +
Sbjct: 267 ENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTV 326
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 69.5 bits (169), Expect = 9e-13
Identities = 27/209 (12%), Positives = 55/209 (26%), Gaps = 46/209 (22%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF 551
+ + P I + ++ + + + W+ N ++L +
Sbjct: 125 IRKPPSCIPETYELG-THDKYGIDLYCGILY-AKHYNNITWYKNNQELIIDGTKYSQSGQ 182
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVT----------------------------- 582
++I + E+SG Y+C
Sbjct: 183 NLIIHNP---ELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKIN 239
Query: 583 -----KASLKCVSKTNLILESQLPEVEWFYNGKKLPHG--HRYRTFHDFGIVILDILYCY 635
A++ C + + +L ++W + Y G + LY
Sbjct: 240 VTIGEPANITCTAVSTSLLVDD-VLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFE 298
Query: 636 ---EENSG-VYECRATNKYGSDVTKASLK 660
EE G Y CR N Y ++
Sbjct: 299 NVTEEYIGNTYTCRGHNYYFDKTLTTTVV 327
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 2e-07
Identities = 19/119 (15%), Positives = 39/119 (32%), Gaps = 6/119 (5%)
Query: 44 VEHALAGKYQRQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWI 103
+++ + + + + I+ K +GE + A ++ I+W
Sbjct: 208 IKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWE 267
Query: 104 FNGKPLELG-----SRFKTTADFGFVTLDLTEVYDRDQG-IYTCRAWNLAGETFTSTTI 156
+ S ++ TL V + G YTCR N + +TT+
Sbjct: 268 NPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTV 326
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 87.3 bits (216), Expect = 3e-19
Identities = 52/328 (15%), Positives = 81/328 (24%), Gaps = 87/328 (26%)
Query: 65 KPVFIV-PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
K V + P E + L +V + +W NG + +
Sbjct: 1 KAVITLQPPWVSVFQEE--TVTLHCEVLHLPGSS-STQWFLNGTATQTSTP--------- 48
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
+ +T D G Y C+ + S I +
Sbjct: 49 -SYRITSASVNDSGEYRCQRGL----SGRSDPIQL----------------------EIH 81
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG 243
L Q +EGE V + NG
Sbjct: 82 RGWLLLQV---SSRV----------------FTEGEPLALRCH-AWKDKLVYNVLYYRNG 121
Query: 244 KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQP 303
K + H L IL T I G Y C K +++ V K
Sbjct: 122 KAFKFFHWNSN--------LTILKTNISHNGTYHCSGMGKHRYTSAGISVT-V---KELF 169
Query: 304 PKFTSHIKSLEGLKDGDSAHFEC--TLTPVN-DPELKVEWFHNGKPI--FHKNRVKMVSD 358
P + L +G+ C L +L ++ K + + +
Sbjct: 170 PAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSS------ 223
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYG 386
I + DSG Y C A + G
Sbjct: 224 ----EYQILTARREDSGLYWCEAATEDG 247
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 4e-17
Identities = 45/307 (14%), Positives = 78/307 (25%), Gaps = 83/307 (27%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
Q V+ + ++ + + +WF NG
Sbjct: 2 AVITLQPPWVSVF-QEETVTLHCEVLHLPGS-SSTQWFLNGTATQTSTP----------S 49
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTK----------------------ASLKCVSKTN 593
I +SG Y C+ SD + +L+C + +
Sbjct: 50 YRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKD 109
Query: 594 LILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD 653
+ V ++ NGK H IL ++G Y C K+
Sbjct: 110 ----KLVYNVLYYRNGKAFKFFHWNSNLT-----ILKTN---ISHNGTYHCSGMGKHRY- 156
Query: 654 VTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF- 712
S + +L P + L EG +
Sbjct: 157 --------TSAGISVTVKELF---------------PAPVLNASVTSP--LLEGNLVTLS 191
Query: 713 -EASLIPV-GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 770
E L+ + F K + + +IL + ED+G+Y C A
Sbjct: 192 CETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSE--------YQILTARREDSGLYWCEAA 243
Query: 771 NKWGQAE 777
+ G
Sbjct: 244 TEDGNVL 250
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 2e-15
Identities = 27/182 (14%), Positives = 50/182 (27%), Gaps = 37/182 (20%)
Query: 217 EGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTG 274
+ E E +P + + ++ NG + S I + D+G
Sbjct: 15 QEETVTLHCEVLHLP---GSSSTQWFLNGTATQTSTP----------SYRITSASVNDSG 61
Query: 275 VYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDP 334
Y C+ I + + + S +G+ C +
Sbjct: 62 EYRCQRGLSGRSDPIQLEI--------HRGWLLLQVSSRV-FTEGEPLALRCH-AWKDKL 111
Query: 335 ELKVEWFHNGKPI--FHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRA 392
V ++ NGK FH N + I +G Y C K+
Sbjct: 112 VYNVLYYRNGKAFKFFHWNSN----------LTILKTNISHNGTYHCSGMGKHRYTSAGI 161
Query: 393 TI 394
++
Sbjct: 162 SV 163
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 1e-11
Identities = 36/205 (17%), Positives = 46/205 (22%), Gaps = 57/205 (27%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 637
VT L C +WF NG I
Sbjct: 16 EETVT---LHCEVLHL----PGSSSTQWFLNGTATQTSTP----------SYRITSASVN 58
Query: 638 NSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSE 697
+SG Y C+ SD + LE L Q
Sbjct: 59 DSGEYRCQRGLSGRSDP------------IQLEIHRGWLLLQV---SSRV---------- 93
Query: 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGT 757
+EGE V + NGK + H L IL T
Sbjct: 94 ------FTEGEPLALRCH-AWKDKLVYNVLYYRNGKAFKFFHWNSN--------LTILKT 138
Query: 758 KIEDTGVYTCRATNKWGQAEISVNL 782
I G Y C K +++
Sbjct: 139 NISHNGTYHCSGMGKHRYTSAGISV 163
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 7e-11
Identities = 38/248 (15%), Positives = 66/248 (26%), Gaps = 65/248 (26%)
Query: 49 AGKY--QRQPSGPEETFAKPVFIVPLKPEFK---LGEAQPLHLEAQVEPKNDPNLKIEWI 103
+G+Y QR SG + + L + E +PL L K+ + +
Sbjct: 60 SGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHA-WKDKLVYNVLYY 118
Query: 104 FNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKES 163
NGK + L + + G Y C T ++
Sbjct: 119 RNGKAFKFFHWNSN--------LTILKTNISHNGTYHCSGMGKHRYTSAGISV------- 163
Query: 164 LIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF 223
+++L P + L EG +
Sbjct: 164 ---------------TVKELF----------------PAPVLNASVTSP--LLEGNLVTL 190
Query: 224 --EASLIPV-GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 280
E L+ + F K + + +IL + ED+G+Y C A
Sbjct: 191 SCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSE--------YQILTARREDSGLYWCEA 242
Query: 281 TNKWGQAE 288
+ G
Sbjct: 243 ATEDGNVL 250
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 61.9 bits (150), Expect = 1e-10
Identities = 43/281 (15%), Positives = 78/281 (27%), Gaps = 53/281 (18%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
++ C + + +WF NG I +DSGEY
Sbjct: 16 EETVTLHCEVLHLPGSS-STQWFLNGTATQTSTPS----------YRITSASVNDSGEYR 64
Query: 379 CRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPK 438
C+ D + L+ + L ++ +G+ + +
Sbjct: 65 CQRGLSGRSD------------PIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKL- 111
Query: 439 FITQISDVTQLKEGQSAHFEA-----RLTPVTDPDL---VCELFSNFFPSQGQQPVAQAA 490
+ +V + G++ F + C +
Sbjct: 112 ----VYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMG----KHRYTSAGISV 163
Query: 491 PVAEAP-KFITQISDVTQLKEGQSAHF--EARLTPVT-DPDLVVEWFYNGKKLPHGHRYR 546
V E + S + L EG E +L L ++ K L +
Sbjct: 164 TVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSS 223
Query: 547 TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
+ IL E+SG+Y C A + G+ V K S +
Sbjct: 224 EYQ-----ILTAR---REDSGLYWCEAATEDGN-VLKRSPE 255
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 1e-09
Identities = 34/186 (18%), Positives = 51/186 (27%), Gaps = 34/186 (18%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
+ Q+S EG+ V ++ NGK H I
Sbjct: 83 GWLLLQVSSRV-FTEGEPLALRCH-AWKDKLVYNVLYYRNGKAFKFFHWNSNLT-----I 135
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTKASLK----------CVSKTNLILE-------- 597
L ++G Y C K+ S+ S T+ +LE
Sbjct: 136 LKTN---ISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSC 192
Query: 598 ---SQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDV 654
L R + IL E+SG+Y C A + G+ V
Sbjct: 193 ETKLLLQRPGLQLYFSFYMGSKTLRGRNTSS--EYQILTARREDSGLYWCEAATEDGN-V 249
Query: 655 TKASLK 660
K S +
Sbjct: 250 LKRSPE 255
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 85.8 bits (212), Expect = 4e-19
Identities = 34/172 (19%), Positives = 54/172 (31%), Gaps = 16/172 (9%)
Query: 232 DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 291
+ T YN + T + G + +D G YTC + + GQ V
Sbjct: 39 QGSTTALVCYNSQITAPYADRVTFSSSG---ITFSSVTRKDNGEYTCMVSEEGGQNYGEV 95
Query: 292 NLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN 351
++ PP + + G+ A C+ P + WF +G + +
Sbjct: 96 SIHLTVLV---PPSKPTISVPSS-VTIGNRAVLTCS-EHDGSPPSEYSWFKDGISMLTAD 150
Query: 352 RVKMVSDFGFVVMD--------IAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
K + V + DSGEY C+A N YG
Sbjct: 151 AKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAH 202
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 74.6 bits (183), Expect = 3e-15
Identities = 37/234 (15%), Positives = 61/234 (26%), Gaps = 57/234 (24%)
Query: 576 KYGSDVTKASLKCVSKTNLILESQLPEVEW-----------FYNGKKLPHGHRYRTFHDF 624
+ L C P VEW YN + TF
Sbjct: 14 PENESIK---LTCTYSGFSS-----PRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSS 65
Query: 625 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVP 684
GI + +++G Y C + + G + + S+ L +P
Sbjct: 66 GITFSSVT---RKDNGEYTCMVSEEGGQNYGEVSIH--------LTVLVP---------- 104
Query: 685 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTV 744
P + S ++ G A S G + +G + + +T
Sbjct: 105 -------PSKPTISVPSS-VTIGNRAVLTCS-EHDGSPPSEYSWFKDGISMLTADAKKTR 155
Query: 745 HAFGMVV--------LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPS 790
L D+G Y C+A N +G A S +
Sbjct: 156 AFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELN 209
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 73.1 bits (179), Expect = 8e-15
Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 44/205 (21%)
Query: 496 PKFITQISDVTQLKEGQSAHFE--ARLTPV-------TDPDLVVEWFYNGKKLPHGHRYR 546
T SDV + E +S YN +
Sbjct: 2 GSVYTAQSDVQ-VPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 547 TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK-----------CVSKTNLI 595
TF GI + +++G Y C + + G + + S+ +++
Sbjct: 61 TFSSSGITFSSVT---RKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVT 117
Query: 596 LESQL------------PEVEWFYNGKKLPHG--HRYRTFHDFGIVI------LDILYCY 635
+ ++ E WF +G + + R F + I L
Sbjct: 118 IGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVT 177
Query: 636 EENSGVYECRATNKYGSDVTKASLK 660
+SG Y C+A N YG+ + +
Sbjct: 178 AFDSGEYYCQAQNGYGTAMRSEAAH 202
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 7e-11
Identities = 35/247 (14%), Positives = 63/247 (25%), Gaps = 62/247 (25%)
Query: 65 KPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF-NGKPL-------ELGSRF 115
K + E+ L + ++EW F G ++ + +
Sbjct: 1 KGSVYTAQSDVQVPENESIKLTCTYS----GFSSPRVEWKFVQGSTTALVCYNSQITAPY 56
Query: 116 KTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEE 175
F + + V +D G YTC G+ + +I+ +
Sbjct: 57 ADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLV------------- 103
Query: 176 GLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM 235
PP + S ++ G A S G
Sbjct: 104 --------------------------PPSKPTISVPSS-VTIGNRAVLTCS-EHDGSPPS 135
Query: 236 TVEFLYNGKPIEASHRIRTVHAFGMVV--------LEILGTKIEDTGVYTCRATNKWGQA 287
+ +G + + +T L D+G Y C+A N +G A
Sbjct: 136 EYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTA 195
Query: 288 EISVNLE 294
S
Sbjct: 196 MRSEAAH 202
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 4e-07
Identities = 20/103 (19%), Positives = 26/103 (25%), Gaps = 10/103 (9%)
Query: 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
P P + L E P + W +G + KT A
Sbjct: 102 LVPPSKPTISVPS-SVTIGNRAVLTCS-EHDGSPPSEYSWFKDGISMLTADAKKTRAFMN 159
Query: 123 FV--------TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
L V D G Y C+A N G S +
Sbjct: 160 SSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAH 202
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212 | Back alignment and structure |
|---|
Score = 49.2 bits (117), Expect = 1e-06
Identities = 21/104 (20%), Positives = 32/104 (30%), Gaps = 10/104 (9%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG--HRYRTFH 549
V P T + + G A P WF +G + + R F
Sbjct: 101 VLVPPSKPTISVPSS-VTIGNRAVLTCS-EHDGSPPSEYSWFKDGISMLTADAKKTRAFM 158
Query: 550 DFGIVI------LDILYCYEENSGVYECRATNKYGSDVTKASLK 587
+ I L +SG Y C+A N YG+ + +
Sbjct: 159 NSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAH 202
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 4e-19
Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 298 KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV- 356
S G P F L +++G +C ++ P + W +GKP+ + KM+
Sbjct: 4 GSSGFRPHFLQAPGDLT-VQEGKLCRMDCKVS--GLPTPDLSWQLDGKPVRPDSAHKMLV 60
Query: 357 SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ G + I V S D+G Y C A N+ G++ +
Sbjct: 61 RENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV 99
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 8e-16
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYR-TFH 549
P F+ D+T ++EG+ + + V+ P + W +GK + ++
Sbjct: 6 SGFRPHFLQAPGDLT-VQEGKLCRMDCK---VSGLPTPDLSWQLDGKPVRPDSAHKMLVR 61
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
+ G+ L I ++G+Y C ATN+ G + L
Sbjct: 62 ENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV 99
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 6e-15
Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 10/112 (8%)
Query: 682 GVPDSEDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH 739
G S G P F Q +L+ EG++ + + G T + + +GKP+
Sbjct: 1 GSSGSS-GFRPHFL---QAPGDLTVQEGKLCRMDCKV--SGLPTPDLSWQLDGKPVRPDS 54
Query: 740 RIRTVHA-FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPS 790
+ + G+ L I D G+YTC ATN+ GQ S+ L V S
Sbjct: 55 AHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV-VAAKES 105
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 1e-14
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 10/115 (8%)
Query: 193 GVPDSEDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH 250
G S G P F Q +L+ EG++ + + G T + + +GKP+
Sbjct: 1 GSSGSS-GFRPHFL---QAPGDLTVQEGKLCRMDCKV--SGLPTPDLSWQLDGKPVRPDS 54
Query: 251 RIRTVHA-FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPP 304
+ + G+ L I D G+YTC ATN+ GQ S+ L V + P
Sbjct: 55 AHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV-VAAKESGPS 108
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 1e-13
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 4/106 (3%)
Query: 59 PEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK-T 117
+ +P F+ + E + ++ +V P + W +GKP+ S K
Sbjct: 3 SGSSGFRPHFLQAPGD-LTVQEGKLCRMDCKVS--GLPTPDLSWQLDGKPVRPDSAHKML 59
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKES 163
+ G +L + V RD GIYTC A N AG+ S + + KES
Sbjct: 60 VRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKES 105
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 2e-11
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 601 PEVEWFYNGKKLPHGHRYR-TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
P++ W +GK + ++ + G+ L I ++G+Y C ATN+ G + L
Sbjct: 39 PDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLEL 98
Query: 660 K 660
Sbjct: 99 V 99
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 7e-19
Identities = 22/92 (23%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P +F +K LE + +G +A C L+ V P V+W + + ++ + + +
Sbjct: 8 PVRFQEALKDLE-VLEGGAATLRCVLSSVAAP---VKWCYGNNVLRPGDKYSLRQEGAML 63
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ + ++ DSG Y C G+ T AT+
Sbjct: 64 ELVVRNLRPQDSGRYSCSF----GDQTTSATL 91
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 2e-16
Identities = 21/99 (21%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
Query: 489 AAPVAEAP-KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT 547
+ + P +F + D+ + EG +A ++ V+W Y L G +Y
Sbjct: 1 GSSGSSGPVRFQEALKDLE-VLEGGAATLRCV---LSSVAAPVKWCYGNNVLRPGDKYSL 56
Query: 548 FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+ ++ L + ++SG Y C G T A+L
Sbjct: 57 RQEGAMLELVVRNLRPQDSGRYSCSF----GDQTTSATL 91
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 3e-14
Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 16/114 (14%)
Query: 197 SEDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT 254
S P +F + L +L EG A + V++ Y + +
Sbjct: 3 SGSSGPVRFQ---EALKDLEVLEGGAATLRCV---LSSVAAPVKWCYGNNVLRPGDKYSL 56
Query: 255 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTS 308
M+ L + + +D+G Y+C ++ A ++V P +S
Sbjct: 57 RQEGAMLELVVRNLRPQDSGRYSCSFGDQTTSATLTV--------TALPSGPSS 102
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 1e-13
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
Query: 686 SEDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT 743
S P +F + L +L EG A + V++ Y + +
Sbjct: 3 SGSSGPVRFQ---EALKDLEVLEGGAATLRCV---LSSVAAPVKWCYGNNVLRPGDKYSL 56
Query: 744 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781
M+ L + + +D+G Y+C ++ A ++V
Sbjct: 57 RQEGAMLELVVRNLRPQDSGRYSCSFGDQTTSATLTVT 94
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 7e-13
Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 8/100 (8%)
Query: 58 GPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT 117
G + F LK ++ E L + P ++W + L G ++
Sbjct: 1 GSSGSSGPVRFQEALKD-LEVLEGGAATLRCVLSSVAAP---VKWCYGNNVLRPGDKYSL 56
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
+ + L + + +D G Y+C G+ TS T+
Sbjct: 57 RQEGAMLELVVRNLRPQDSGRYSCS----FGDQTTSATLT 92
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-09
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 583 KASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVY 642
A+L+CV L S V+W Y L G +Y + ++ L + ++SG Y
Sbjct: 25 AATLRCV------LSSVAAPVKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRY 78
Query: 643 ECRATNKYGSDVTKASL 659
C G T A+L
Sbjct: 79 SCSF----GDQTTSATL 91
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 8e-19
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFH-KNRVKMVSDFGF 361
PP F + +++G + +P+ V W N +P+ + R ++ G
Sbjct: 5 PPTFKVSLMDQS-VREGQDVIMSIRVQ--GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGL 61
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGK 399
+ I + D+G Y C+A N+YG A ++ G+
Sbjct: 62 CRLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 1e-18
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKL-PHGHRYRTFHDF 551
P F + D + ++EGQ R V +P VV W N + + P R+ +
Sbjct: 4 APPTFKVSLMDQS-VREGQDVIMSIR---VQGEPKPVVSWLRNRQPVRPDQRRFAEEAEG 59
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
G+ L IL ++G Y C+A N+YG+ +A L+
Sbjct: 60 GLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLE 95
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 1e-14
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 201 RPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTVHA 257
PP F L + S EG+ + G+ V +L N +P+ R
Sbjct: 4 APPTFK---VSLMDQSVREGQDVIMSIRV--QGEPKPVVSWLRNRQPVRPDQRRFAEEAE 58
Query: 258 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
G+ L IL + D G YTC+A N++G + LE
Sbjct: 59 GGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLE 95
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 1e-14
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 8/97 (8%)
Query: 690 RPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTVHA 746
PP F L + S EG+ + G+ V +L N +P+ R
Sbjct: 4 APPTFK---VSLMDQSVREGQDVIMSIRV--QGEPKPVVSWLRNRQPVRPDQRRFAEEAE 58
Query: 747 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
G+ L IL + D G YTC+A N++G + LE
Sbjct: 59 GGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLE 95
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 2e-14
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS-RFKTTADFG 122
A P F V L + E Q + + +V+ +P + W+ N +P+ RF A+ G
Sbjct: 4 APPTFKVSLMD-QSVREGQDVIMSIRVQ--GEPKPVVSWLRNRQPVRPDQRRFAEEAEGG 60
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L + D G YTC+A N G +
Sbjct: 61 LCRLRILAAERGDAGFYTCKAVNEYGARQCEARL 94
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 7e-14
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 601 PEVEWFYNGKKL-PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
P V W N + + P R+ + G+ L IL ++G Y C+A N+YG+ +A L
Sbjct: 35 PVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARL 94
Query: 660 K 660
+
Sbjct: 95 E 95
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 9e-19
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 9/109 (8%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P +FT +K+ E +G +A +C L+ VEW + + R + D
Sbjct: 8 PARFTQDLKTKE-ASEGATATLQCELSK--VAP--VEWKKGPETLRDGGRYSLKQDGTRC 62
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPES 411
+ I + D+GEY C G++ T AT+ + + P S
Sbjct: 63 ELQIHDLSVADAGEYSCMC----GQERTSATLTVRALPARFTEGSGPSS 107
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 1e-15
Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 9/110 (8%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
+ +F + EG +A + L+ V VEW + L G RY D
Sbjct: 6 SGPARFTQDLKTKE-ASEGATATLQCELSKVAP----VEWKKGPETLRDGGRYSLKQDGT 60
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPE 602
L I ++G Y C G + T A+L + E P
Sbjct: 61 RCELQIHDLSVADAGEYSCMC----GQERTSATLTVRALPARFTEGSGPS 106
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 5e-15
Identities = 25/119 (21%), Positives = 40/119 (33%), Gaps = 13/119 (10%)
Query: 197 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 256
S P +FT + + SEG A + L V VE+ + + R
Sbjct: 3 SGSSGPARFTQDLKTKE-ASEGATATLQCELSKVA----PVEWKKGPETLRDGGRYSLKQ 57
Query: 257 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEG 315
L+I + D G Y+C + A ++V + P +FT G
Sbjct: 58 DGTRCELQIHDLSVADAGEYSCMCGQERTSATLTV--------RALPARFTEGSGPSSG 108
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 3e-13
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 5/96 (5%)
Query: 686 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 745
S P +FT + + SEG A + L V VE+ + + R
Sbjct: 3 SGSSGPARFTQDLKTKE-ASEGATATLQCELSKVA----PVEWKKGPETLRDGGRYSLKQ 57
Query: 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781
L+I + D G Y+C + A ++V
Sbjct: 58 DGTRCELQIHDLSVADAGEYSCMCGQERTSATLTVR 93
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 2e-11
Identities = 22/115 (19%), Positives = 38/115 (33%), Gaps = 9/115 (7%)
Query: 58 GPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT 117
G + F LK + + E L+ ++ +EW + L G R+
Sbjct: 1 GSSGSSGPARFTQDLKTK-EASEGATATLQCELSK--VA--PVEWKKGPETLRDGGRYSL 55
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPK 172
D L + ++ D G Y+C G+ TS T+ + P
Sbjct: 56 KQDGTRCELQIHDLSVADAGEYSCM----CGQERTSATLTVRALPARFTEGSGPS 106
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 8e-10
Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 13/94 (13%)
Query: 583 KASLKC-VSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 641
A+L+C +SK VEW + L G RY D L I ++G
Sbjct: 25 TATLQCELSKV--------APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGE 76
Query: 642 YECRATNKYGSDVTKASLKCVSKTNLILESQLPE 675
Y C G + T A+L + E P
Sbjct: 77 YSCMC----GQERTSATLTVRALPARFTEGSGPS 106
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 1e-18
Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 3/101 (2%)
Query: 299 SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD 358
S P+ + + ++ G+S +T + W K I +K+ +
Sbjct: 3 SGSSGPQIIQFPEDQK-VRAGESVELFGKVTG--TQPITCTWMKFRKQIQESEHMKVENS 59
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGK 399
+ I + G Y NK G + + K
Sbjct: 60 ENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 1e-16
Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 3/103 (2%)
Query: 489 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTF 548
+ + P+ I D ++ G+S ++T + W K++ +
Sbjct: 1 GSSGSSGPQIIQFPEDQK-VRAGESVELFGKVTG--TQPITCTWMKFRKQIQESEHMKVE 57
Query: 549 HDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSK 591
+ L IL +E+ G Y NK GS + +L V K
Sbjct: 58 NSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 100
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 5e-16
Identities = 31/115 (26%), Positives = 44/115 (38%), Gaps = 8/115 (6%)
Query: 193 GVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI 252
G S PQ + + GE + G Q +T ++ K I+ S +
Sbjct: 1 GSSGSS---GPQIIQFPEDQK-VRAGESVELFGKV--TGTQPITCTWMKFRKQIQESEHM 54
Query: 253 RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFT 307
+ ++ L IL + E G YT NK G + VNL VD K PP T
Sbjct: 55 KVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVD--KPDPPAGT 107
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 3e-14
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
Query: 682 GVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI 741
G S PQ + + GE + G Q +T ++ K I+ S +
Sbjct: 1 GSSGSS---GPQIIQFPEDQK-VRAGESVELFGKV--TGTQPITCTWMKFRKQIQESEHM 54
Query: 742 RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+ ++ L IL + E G YT NK G + VNL
Sbjct: 55 KVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNL 95
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 1e-12
Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 5/94 (5%)
Query: 64 AKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
+ P I + + + GE + L +V + W+ K ++ K
Sbjct: 6 SGPQIIQFPEDQKVRAGE--SVELFGKVTG--TQPITCTWMKFRKQIQESEHMKVENSEN 61
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L + G YT N G +
Sbjct: 62 GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNL 95
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-10
Identities = 15/64 (23%), Positives = 23/64 (35%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
W K++ + + L IL +E+ G Y NK GS + +L
Sbjct: 37 ITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLT 96
Query: 661 CVSK 664
V K
Sbjct: 97 VVDK 100
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 1e-18
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
+ + +S+ + +G+SA F C +P V W G+ + R ++ +
Sbjct: 14 AARILTKPRSMT-VYEGESARFSCDTD--GEPVPTVTWLRKGQVLSTSARHQVTTTKYKS 70
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+I+ VQ+ D G Y N G+ T+
Sbjct: 71 TFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 103
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 5e-18
Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 5/106 (4%)
Query: 483 QQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPH 541
++ A + +T+ +T + EG+SA F +P V W G+ L
Sbjct: 2 HHHHHHSSKTTLAARILTKPRSMT-VYEGESARFSCD---TDGEPVPTVTWLRKGQVLST 57
Query: 542 GHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
R++ +I + G Y N G + +L
Sbjct: 58 SARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 103
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 4e-14
Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 3/94 (3%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
+ + + E + + +P + W+ G+ L +R + T
Sbjct: 13 LAARILTKPRS-MTVYEGESARFSCDTD--GEPVPTVTWLRKGQVLSTSARHQVTTTKYK 69
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
T +++ V D+G Y+ N G+ T+
Sbjct: 70 STFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 103
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 1e-13
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
+ ++ + ++ + EGE A F G+ TV +L G+ + S R +
Sbjct: 14 AARILTKPRSMT-VYEGESARFSCDT--DGEPVPTVTWLRKGQVLSTSARHQVTTTKYKS 70
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
EI + D G Y+ N G+ E L
Sbjct: 71 TFEISSVQASDEGNYSVVVENSEGKQEAEFTL 102
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 1e-13
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
+ ++ + ++ + EGE A F G+ TV +L G+ + S R +
Sbjct: 14 AARILTKPRSMT-VYEGESARFSCDT--DGEPVPTVTWLRKGQVLSTSARHQVTTTKYKS 70
Query: 751 VLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
EI + D G Y+ N G+ E L
Sbjct: 71 TFEISSVQASDEGNYSVVVENSEGKQEAEFTL 102
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 5e-12
Identities = 12/60 (20%), Positives = 19/60 (31%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
P V W G+ L R++ +I + G Y N G + +L
Sbjct: 44 PTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLT 103
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 80.4 bits (199), Expect = 2e-18
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 4/95 (4%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV-SDFG 360
PP+F +++ + +G + ++ P V W+ NG+ + + KM+ S+ G
Sbjct: 4 GPPRFIQVPENMS-IDEGRFCRMDFKVS--GLPAPDVSWYLNGRTVQSDDLHKMIVSEKG 60
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ V++ D+G Y C A N+ GE +
Sbjct: 61 LHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 2e-16
Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYR-TFHDF 551
P+FI +++ + EG+ + + V+ P V W+ NG+ + ++ +
Sbjct: 4 GPPRFIQVPENMS-IDEGRFCRMDFK---VSGLPAPDVSWYLNGRTVQSDDLHKMIVSEK 59
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSK 591
G+ L ++G Y C A N+ G L ++K
Sbjct: 60 GLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAK 99
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 2e-14
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 202 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR-TVHAF 258
PP+F Q N+S EG + + G V + NG+ +++ + V
Sbjct: 5 PPRFI---QVPENMSIDEGRFCRMDFKV--SGLPAPDVSWYLNGRTVQSDDLHKMIVSEK 59
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
G+ L + D G Y C A N+ G+A +V L+
Sbjct: 60 GLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 2e-14
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 691 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR-TVHAF 747
PP+F Q N+S EG + + G V + NG+ +++ + V
Sbjct: 5 PPRFI---QVPENMSIDEGRFCRMDFKV--SGLPAPDVSWYLNGRTVQSDDLHKMIVSEK 59
Query: 748 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
G+ L + D G Y C A N+ G+A +V L+
Sbjct: 60 GLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLD 95
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 3e-13
Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 4/98 (4%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK-TTADFGFV 124
P FI + + E + ++ +V P + W NG+ ++ K ++ G
Sbjct: 6 PRFIQVPEN-MSIDEGRFCRMDFKVS--GLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLH 62
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKE 162
+L V D G Y C A N AGE + + KE
Sbjct: 63 SLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 5e-12
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Query: 601 PEVEWFYNGKKLPHGHRYR-TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
P+V W+ NG+ + ++ + G+ L ++G Y C A N+ G L
Sbjct: 35 PDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQL 94
Query: 660 KCVSK 664
++K
Sbjct: 95 DVLAK 99
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 86.8 bits (214), Expect = 3e-18
Identities = 45/349 (12%), Positives = 97/349 (27%), Gaps = 72/349 (20%)
Query: 40 KVQEVEHALAGKYQRQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLK 99
++ ++ + Y + +E VF + + L + Q L L + P +
Sbjct: 70 IIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPP--GSSPS 127
Query: 100 IEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCS 159
++ G + TL ++++ +D G +TC + I
Sbjct: 128 VQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI--- 174
Query: 160 TKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGE 219
++ + +++ V S F F GE
Sbjct: 175 ---VVLAFQKAS------------SIVYKKEGEQVEFS-------FPLAFTVEKLTGSGE 212
Query: 220 IAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKI----EDTGV 275
+ ++A +T + ++ + + + L + + +G
Sbjct: 213 L-WWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGN 271
Query: 276 YTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE 335
T K G+ VNL V ++ T C + P+
Sbjct: 272 LTLALEAKTGKLHQEVNLV-VMRATQLQKNLT------------------CEVWGPTSPK 312
Query: 336 LKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNK 384
L + K R K V V + ++G + C +
Sbjct: 313 LMLSLKLENKEAKVSKREKAVW-----------VLNPEAGMWQCLLSDS 350
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 78.7 bits (193), Expect = 1e-15
Identities = 47/336 (13%), Positives = 92/336 (27%), Gaps = 59/336 (17%)
Query: 504 DVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR-----------------YR 546
V K+G + + + W + + G++ R
Sbjct: 2 KVVLGKKGDTVELTCTASQ--KKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR 59
Query: 547 TFHDFGIVILDILYCYEENSGVYECRATNKYGS-DVTKASLKCVSKTNLILESQL----- 600
+ D G L I E+S Y C ++ + L S T+L+ L
Sbjct: 60 SLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLE 119
Query: 601 ------PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDV 654
P V+ K G + L + ++SG + C
Sbjct: 120 SPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQNQKKVE 169
Query: 655 TKASLKCVSKTNLILESQLPELRRQPAGVPDS-EDGRPPQFTSEFQHLSNLSEGEIAHFE 713
K ++++ + + E P FT E L+ ++
Sbjct: 170 --------FKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVE-----KLTGSGELWWQ 216
Query: 714 ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKI----EDTGVYTCRA 769
A +T + ++ + + + L + + +G T
Sbjct: 217 AERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLAL 276
Query: 770 TNKWGQAEISVNLECVVWSPSQTKLVYSLFEVPQPD 805
K G+ VNL + + Q L ++ P
Sbjct: 277 EAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPK 312
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 3e-13
Identities = 41/321 (12%), Positives = 84/321 (26%), Gaps = 46/321 (14%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSA 322
L I KIED+ Y C ++ + ++ V F S L G S
Sbjct: 69 LIIKNLKIEDSDTYICEVEDQKEEVQLLV--------------FGLTANSDTHLLQGQSL 114
Query: 323 HFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAW 382
P V+ + + ++ ++ DSG + C
Sbjct: 115 TLTLESPP--GSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVL 162
Query: 383 NKYGEDFTRATIKCFGKGGVYLDSLQPE------SLARIRELENAQGQQPVAQAAPVAEA 436
+ + I + E S +E G + A A +
Sbjct: 163 QNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASS 222
Query: 437 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFS-NFFPSQGQQPVAQAAPVAEA 495
K + + + +L L L + A+
Sbjct: 223 SKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLAL--EAKT 280
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
K +++ V + + T P L++ K+ R +
Sbjct: 281 GKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREK--------- 331
Query: 556 LDILYCYEENSGVYECRATNK 576
++ +G+++C ++
Sbjct: 332 --AVWVLNPEAGMWQCLLSDS 350
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 65.2 bits (158), Expect = 2e-11
Identities = 18/147 (12%), Positives = 50/147 (34%), Gaps = 14/147 (9%)
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNL---------ECVDKSKGQPPKFTSHIK- 311
L + +++D+G +TC + E +++ V K +G+ +F+ +
Sbjct: 143 TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAF 202
Query: 312 SLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIF--HKNRVKMVSDFGFVVMDI--A 367
++E L ++ + + + + + ++ + + + + A
Sbjct: 203 TVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQA 262
Query: 368 YVQSHDSGEYVCRAWNKYGEDFTRATI 394
Q SG K G+ +
Sbjct: 263 LPQYAGSGNLTLALEAKTGKLHQEVNL 289
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 8e-07
Identities = 32/320 (10%), Positives = 64/320 (20%), Gaps = 107/320 (33%)
Query: 506 TQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEEN 565
T L +GQS P V+ K G + L + ++
Sbjct: 106 THLLQGQSLTLTLESPP--GSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQD 153
Query: 566 SGVYECRATNKYGSDVTKASLK----------------------CVSKTNLILESQLPEV 603
SG + C K + + + E+
Sbjct: 154 SGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGEL 213
Query: 604 EWFYNGKKLPHGHRYRTFHDFGIVI--------------------LDILYCYEENSGVYE 643
W + + + L SG
Sbjct: 214 WWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLT 273
Query: 644 CRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSN 703
K G + +L + L + G +
Sbjct: 274 LALEAKTGKLHQEVNL-----VVMRATQLQKNLTCEVWGPTSPK---------------- 312
Query: 704 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTG 763
+ + K + S R + + + G
Sbjct: 313 --------------------LMLSLKLENKEAKVSKR-----------EKAVWVLNPEAG 341
Query: 764 VYTCRATNKWGQAEISVNLE 783
++ C ++ GQ + N++
Sbjct: 342 MWQCLLSDS-GQVLLESNIK 360
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 3e-05
Identities = 14/159 (8%), Positives = 40/159 (25%), Gaps = 24/159 (15%)
Query: 504 DVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF----GIVILDIL 559
V +L ++A + + + + + + L
Sbjct: 203 TVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQA 262
Query: 560 YCYEENSGVYECRATNKYGSDVTKASLK--CVSKTNLILESQL-------PEVEWFYNGK 610
SG K G + +L ++ L ++ + K
Sbjct: 263 LPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENK 322
Query: 611 KLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNK 649
+ R + ++ +G+++C ++
Sbjct: 323 EAKVSKREK-----------AVWVLNPEAGMWQCLLSDS 350
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 12/75 (16%)
Query: 82 QPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTC 141
+L +V P L + K ++ R K V + + G++ C
Sbjct: 297 LQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREK-----------AVWVLNPEAGMWQC 345
Query: 142 RAWNLAGETFTSTTI 156
+ +G+ + I
Sbjct: 346 LLSD-SGQVLLESNI 359
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 4e-04
Identities = 13/86 (15%), Positives = 29/86 (33%), Gaps = 19/86 (22%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD------------- 365
GD+ CT + ++ W ++ + N+ ++ + D
Sbjct: 9 GDTVELTCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 366 ----IAYVQSHDSGEYVCRAWNKYGE 387
I ++ DS Y+C ++ E
Sbjct: 67 FPLIIKNLKIEDSDTYICEVEDQKEE 92
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 4e-18
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 6/93 (6%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
T +K++E + +G+S FEC L+ W GK + +R +
Sbjct: 8 HVGITKRLKTME-VLEGESCSFECVLSHE-SASDPAMWTVGGKTVGSSSRFQATRQGRKY 65
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
++ + D+GE V ++A++
Sbjct: 66 ILVVREAAPSDAGEVVFSV----RGLTSKASLI 94
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 6e-16
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 6/95 (6%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
+ ++ + + EG+S FE L+ W GK + R++
Sbjct: 6 SGHVGITKRLKTME-VLEGESCSFECVLSH-ESASDPAMWTVGGKTVGSSSRFQATRQGR 63
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
IL + ++G +KASL
Sbjct: 64 KYILVVREAAPSDAGEVVFSV----RGLTSKASLI 94
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 3e-15
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 2/96 (2%)
Query: 197 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 256
S T + + + EGE FE + + + GK + +S R +
Sbjct: 3 SGSSGHVGITKRLKTME-VLEGESCSFECV-LSHESASDPAMWTVGGKTVGSSSRFQATR 60
Query: 257 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 292
+L + D G +A + V
Sbjct: 61 QGRKYILVVREAAPSDAGEVVFSVRGLTSKASLIVR 96
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 3e-15
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 2/96 (2%)
Query: 686 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 745
S T + + + EGE FE + + + GK + +S R +
Sbjct: 3 SGSSGHVGITKRLKTME-VLEGESCSFECV-LSHESASDPAMWTVGGKTVGSSSRFQATR 60
Query: 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781
+L + D G +A + V
Sbjct: 61 QGRKYILVVREAAPSDAGEVVFSVRGLTSKASLIVR 96
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 9e-12
Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 2/86 (2%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
LK ++ E + E + + + W GK + SRF+ T
Sbjct: 7 GHVGITKRLKTM-EVLEGESCSFECVLSHE-SASDPAMWTVGGKTVGSSSRFQATRQGRK 64
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGE 149
L + E D G L +
Sbjct: 65 YILVVREAAPSDAGEVVFSVRGLTSK 90
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 5e-10
Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 8/78 (10%)
Query: 583 KASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVY 642
S +CV L ES W GK + R++ IL + ++G
Sbjct: 25 SCSFECV----LSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEV 80
Query: 643 ECRATNKYGSDVTKASLK 660
+KASL
Sbjct: 81 VFSV----RGLTSKASLI 94
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 5e-18
Identities = 17/96 (17%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 299 SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD 358
FT + +L+ +++ +A F C P V W + + + +
Sbjct: 4 GSSGANCFTEELTNLQ-VEEKGTAVFTCK---TEHPAATVTWRKGLLELRASGKHQPSQE 59
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ + I+ ++ DS Y C G+ +RA +
Sbjct: 60 GLTLRLTISALEKADSDTYTCDI----GQAQSRAQL 91
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 7e-16
Identities = 17/94 (18%), Positives = 37/94 (39%), Gaps = 8/94 (8%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
+ A F +++++ ++E +A F + P V W +L +++ +
Sbjct: 6 SGANCFTEELTNLQ-VEEKGTAVFTCK---TEHPAATVTWRKGLLELRASGKHQPSQEGL 61
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+ L I + +S Y C G ++A L
Sbjct: 62 TLRLTISALEKADSDTYTCDI----GQAQSRAQL 91
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 65.0 bits (159), Expect = 4e-13
Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 12/112 (10%)
Query: 197 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 256
S FT E +L + E A F TV + + AS + +
Sbjct: 3 SGSSGANCFTEELTNLQ-VEEKGTAVFTCK---TEHPAATVTWRKGLLELRASGKHQPSQ 58
Query: 257 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTS 308
+ L I + D+ YTC +A++ V +G+ +S
Sbjct: 59 EGLTLRLTISALEKADSDTYTCDIGQAQSRAQLLV--------QGRRSGPSS 102
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 3e-12
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 4/95 (4%)
Query: 686 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 745
S FT E +L + E A F TV + + AS + +
Sbjct: 3 SGSSGANCFTEELTNLQ-VEEKGTAVFTCK---TEHPAATVTWRKGLLELRASGKHQPSQ 58
Query: 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
+ L I + D+ YTC +A++ V
Sbjct: 59 EGLTLRLTISALEKADSDTYTCDIGQAQSRAQLLV 93
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 5e-12
Identities = 14/100 (14%), Positives = 30/100 (30%), Gaps = 8/100 (8%)
Query: 58 GPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT 117
G + F L ++ E + E P + W L + +
Sbjct: 1 GSSGSSGANCFTEELTNL-QVEEKGTAVFTCKTE---HPAATVTWRKGLLELRASGKHQP 56
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
+ + + L ++ + D YTC G+ + +
Sbjct: 57 SQEGLTLRLTISALEKADSDTYTCD----IGQAQSRAQLL 92
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 4e-09
Identities = 14/77 (18%), Positives = 24/77 (31%), Gaps = 10/77 (12%)
Query: 583 KASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVY 642
A C E V W +L +++ + + L I + +S Y
Sbjct: 25 TAVFTCK------TEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTY 78
Query: 643 ECRATNKYGSDVTKASL 659
C G ++A L
Sbjct: 79 TCDI----GQAQSRAQL 91
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 77.7 bits (192), Expect = 1e-17
Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 8/102 (7%)
Query: 487 AQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRY 545
+ ++ + AP F + + D + EGQ + V P + W NG+ + +
Sbjct: 3 SGSSGMEVAPSFSSVLKDCA-VIEGQDFVLQCS---VRGTPVPRITWLLNGQPIQYA--- 55
Query: 546 RTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
R+ + G+ L I E+ G Y C A N G A +
Sbjct: 56 RSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 5e-16
Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 6/99 (6%)
Query: 297 DKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV 356
P F+S +K + +G +C++ P ++ W NG+PI R
Sbjct: 5 SSGMEVAPSFSSVLKDCA-VIEGQDFVLQCSVR--GTPVPRITWLLNGQPI-QYAR--ST 58
Query: 357 SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ G + I D G Y C A N G+ A +
Sbjct: 59 CEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 2e-13
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 6/100 (6%)
Query: 57 SGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK 116
SG P F LK + E Q L+ V P +I W+ NG+P++
Sbjct: 3 SGSSGMEVAPSFSSVLKD-CAVIEGQDFVLQCSVR--GTPVPRITWLLNGQPIQYARSTC 59
Query: 117 TTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ G L + + D G YTC A N G+ S +
Sbjct: 60 ---EAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWV 96
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 3e-13
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 202 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
P F+ L + + EG+ + S+ G + +L NG+PI+ + G
Sbjct: 11 APSFS---SVLKDCAVIEGQDFVLQCSV--RGTPVPRITWLLNGQPIQYARSTCEA---G 62
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+ L I ED G YTC A N GQ S +
Sbjct: 63 VAELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 3e-13
Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 10/95 (10%)
Query: 691 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
P F+ L + + EG+ + S+ G + +L NG+PI+ + G
Sbjct: 11 APSFS---SVLKDCAVIEGQDFVLQCSV--RGTPVPRITWLLNGQPIQYARSTCEA---G 62
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
+ L I ED G YTC A N GQ S +
Sbjct: 63 VAELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 1e-11
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
P + W NG+ + + R+ + G+ L I E+ G Y C A N G A +
Sbjct: 41 PRITWLLNGQPIQYA---RSTCEAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 77.8 bits (192), Expect = 2e-17
Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 5/99 (5%)
Query: 298 KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVS 357
P F +K + + +G F C + +P+ K+ WF +GK I K+ +
Sbjct: 3 SGSSGAPFFEMKLKHYK-IFEGMPVTFTCRVA--GNPKPKIYWFKDGKQISPKSDHYTIQ 59
Query: 358 --DFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
G + D G Y A N G +
Sbjct: 60 RDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRL 98
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 5e-16
Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 7/101 (6%)
Query: 489 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKL-PHGHRYR 546
++ + AP F ++ + EG F R V +P + WF +GK++ P Y
Sbjct: 2 SSGSSGAPFFEMKLKHYK-IFEGMPVTFTCR---VAGNPKPKIYWFKDGKQISPKSDHYT 57
Query: 547 TFHD-FGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
D G L ++ G Y A N G L
Sbjct: 58 IQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRL 98
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 1e-13
Identities = 24/110 (21%), Positives = 37/110 (33%), Gaps = 6/110 (5%)
Query: 197 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRT 254
S P F + +H + EG F + G+ + + +GK I H
Sbjct: 3 SGSSGAPFFEMKLKHYK-IFEGMPVTFTCRV--AGNPKPKIYWFKDGKQISPKSDHYTIQ 59
Query: 255 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPP 304
G L + ++D G YT A N G+ + L V P
Sbjct: 60 RDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM-VQAVNSGPS 108
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 2e-13
Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 5/100 (5%)
Query: 686 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRT 743
S P F + +H + EG F + G+ + + +GK I H
Sbjct: 3 SGSSGAPFFEMKLKHYK-IFEGMPVTFTCRV--AGNPKPKIYWFKDGKQISPKSDHYTIQ 59
Query: 744 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
G L + ++D G YT A N G+ + L
Sbjct: 60 RDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 4e-13
Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 5/102 (4%)
Query: 58 GPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT 117
G + P F + LK +K+ E P+ +V +P KI W +GK + S T
Sbjct: 1 GSSGSSGAPFFEMKLKH-YKIFEGMPVTFTCRVA--GNPKPKIYWFKDGKQISPKSDHYT 57
Query: 118 TA--DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
G +L T D G YT A N G + +
Sbjct: 58 IQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLM 99
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 3e-11
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 601 PEVEWFYNGKKL-PHGHRYRTFHD-FGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 658
P++ WF +GK++ P Y D G L ++ G Y A N G
Sbjct: 38 PKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGR 97
Query: 659 L 659
L
Sbjct: 98 L 98
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 85.8 bits (211), Expect = 2e-17
Identities = 61/482 (12%), Positives = 115/482 (23%), Gaps = 84/482 (17%)
Query: 252 IRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIK 311
+ G V+ I +D+G Y C V+LE Q P + K
Sbjct: 66 LTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVS-----QGPGLLNDTK 120
Query: 312 SLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIF------------HKNRVKMVSD- 358
+ C N + K + G + R+++
Sbjct: 121 VYTVDLGR-TVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQG 179
Query: 359 ---FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARI 415
F V+ I ++ D+G+Y+C+A + + A ++ + S+
Sbjct: 180 TGQLLFSVV-INQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFH 238
Query: 416 RELENAQGQQPVAQ-AAPVAEAPKFITQISD---------VTQLKEGQSAHFEARLTPVT 465
L E + + + + F +T +
Sbjct: 239 CALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLR 298
Query: 466 DPD---LVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTP 522
D +C S+ +G A V E + V G S
Sbjct: 299 KEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVK-GVAGSSVAVLCPYNR 357
Query: 523 VTDPDL---------------VVEWFYNGKKLPHGHRY--RTFHDFGIVILDILYCYEEN 565
+ ++ K + R G + + +
Sbjct: 358 KESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRD 417
Query: 566 SGVYECRATNKYGSDVTKASLKCVSKTNLILESQL-----------------------PE 602
+G Y C T + NL + +
Sbjct: 418 AGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYW 477
Query: 603 VEWFYNGKKL-------PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVT 655
+W G + P + +V L + + G Y C + T
Sbjct: 478 CKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGET 537
Query: 656 KA 657
A
Sbjct: 538 AA 539
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 83.1 bits (204), Expect = 1e-16
Identities = 58/502 (11%), Positives = 135/502 (26%), Gaps = 70/502 (13%)
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEK 179
+ G +++ ++ D G Y C + ++ S L+ T+ +
Sbjct: 71 ENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDL---- 126
Query: 180 IQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEF 239
+ + Q L + V D + V
Sbjct: 127 ---------GRTVTINCPFKTENAQKRKSLYKQIGLY----------PVLVIDSSGYVNP 167
Query: 240 LYNGKPIEASHRIRTVH-AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
Y G+ R+ + + I ++ D G Y C+A + + + +L+ +
Sbjct: 168 NYTGR-----IRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKP 222
Query: 299 SKGQ---PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKM 355
+ + G + + A F C + + ++ V + + R+ +
Sbjct: 223 EPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVV-NTLGKRAPAFEGRILL 281
Query: 356 VSD--FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLA 413
G + I ++ D+G Y+C A + + ++
Sbjct: 282 NPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVV 341
Query: 414 RIRELENA-------------------QGQQPVAQAAPVAEAPKFITQISD--VTQLKEG 452
+ + + + ++ ++ + ++ L+E
Sbjct: 342 KGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEP 401
Query: 453 QSAHFEARLTPVTDPDL---VCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLK 509
+ F L +T D C +N + K ++ V
Sbjct: 402 GNGTFTVILNQLTSRDAGFYWCL--TNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGET 459
Query: 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKL-------PHGHRYRTFHDFGIVILDILYCY 562
HF + + +W G + P + +V L +
Sbjct: 460 LKVPCHFPCKFSSYEKY--WCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVT 517
Query: 563 EENSGVYECRATNKYGSDVTKA 584
+ G Y C + T A
Sbjct: 518 RADEGWYWCGVKQGHFYGETAA 539
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 77.0 bits (188), Expect = 1e-14
Identities = 40/373 (10%), Positives = 84/373 (22%), Gaps = 72/373 (19%)
Query: 61 ETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL--------- 111
++ ++ + + + + + + +N K + G L
Sbjct: 107 LEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVN 166
Query: 112 ---GSRFKTTADF---GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLI 165
R + ++ + ++ D G Y C+A + + + + L
Sbjct: 167 PNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQV-----LK 221
Query: 166 ERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEA 225
+ + + S
Sbjct: 222 PEPELVYEDLR-------------GSVTFHCALGPEVANVAKFLCRQS------------ 256
Query: 226 SLIPVGDQTMTVEFLYNGKPIEAS---HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 282
+ V GK A + G + I G + ED G Y C A +
Sbjct: 257 -----SGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHS 311
Query: 283 KWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELK----- 337
E S ++ G S C +K
Sbjct: 312 DGQLQEGSPIQAWQLFV--NEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLW 369
Query: 338 --VEWFHNGKPIFHKNRVKMVSDFGFVVMD----------IAYVQSHDSGEYVCRAWNKY 385
+ + + VK + +++ + + S D+G Y C
Sbjct: 370 EGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDT 429
Query: 386 GEDFTRATIKCFG 398
T G
Sbjct: 430 LWRTTVEIKIIEG 442
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 68.5 bits (166), Expect = 4e-12
Identities = 49/349 (14%), Positives = 92/349 (26%), Gaps = 78/349 (22%)
Query: 510 EGQSAHFEARLTPVT-DPDLVVEWFYNGKK--------------LPHGHRY--RTFHDFG 552
EG S P + + W G + + R F + G
Sbjct: 14 EGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENG 73
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL------------ 600
+++I +++SG Y+C SL+ L+ ++++
Sbjct: 74 TFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTIN 133
Query: 601 --------PEVEWFYNGKKLP--------------HGHRYR---TFHDFGIVILDILYCY 635
+ + Y L + R R + + I
Sbjct: 134 CPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLR 193
Query: 636 EENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFT 695
++G Y C+A + S+ A L+ + + +
Sbjct: 194 LSDAGQYLCQAGDDSNSNKKNADLQVLKP-------------------EPELVYEDLRGS 234
Query: 696 SEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS---HRIRTVHAFGMVVL 752
F +A F + V GK A + G +
Sbjct: 235 VTFHCALGPEVANVAKFLCR--QSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSV 292
Query: 753 EILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKLVYSLFEV 801
I G + ED G Y C A + E S ++ ++ + S V
Sbjct: 293 VITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVV 341
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 67.3 bits (163), Expect = 1e-11
Identities = 46/371 (12%), Positives = 89/371 (23%), Gaps = 53/371 (14%)
Query: 49 AGKYQ---RQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEP------------K 93
AG+Y S + A + P + + P
Sbjct: 197 AGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQS 256
Query: 94 NDPNLKIEWIFNGKPLE-LGSRFKTT--ADFGFVTLDLTEVYDRDQGIYTCRAWNLAGET 150
+ N + GK R G ++ +T + D G Y C A +
Sbjct: 257 SGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQ 316
Query: 151 FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQ 210
S + + + E + P+ ++ + ++
Sbjct: 317 EGS--PIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKE------SKSIKYWCL 368
Query: 211 HLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKI 270
+ + D V+ Y G+ + G + +
Sbjct: 369 WEGAQNG--------RCPLLVDSEGWVKAQYEGR-----LSLLEEPGNGTFTVILNQLTS 415
Query: 271 EDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTP 330
D G Y C + + P ++ ++ G HF C +
Sbjct: 416 RDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVP---GNVTAVLGETLKVPCHFPCKFSS 472
Query: 331 VNDPELKVEWFHNGKPIFHK-----NRVKMVSDFG---FVVMDIAYVQSHDSGEYVCRAW 382
K W + G ++ + D + + V D G Y C
Sbjct: 473 YEKYWCK--WNNTGCQALPSQDEGPSKAFVNCDENSRLVSLT-LNLVTRADEGWYWCGVK 529
Query: 383 NKYGEDFTRAT 393
+ T A
Sbjct: 530 QGHFYGETAAV 540
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585 | Back alignment and structure |
|---|
Score = 61.2 bits (147), Expect = 8e-10
Identities = 69/576 (11%), Positives = 131/576 (22%), Gaps = 121/576 (21%)
Query: 319 GDSAHFECTLTPVN-DPELKVEWFHNGKPIF--------------HKNRVKMVSD--FGF 361
G+S C P + + + W G + R + + G
Sbjct: 15 GNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGT 74
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENA 421
V++IA + DSG Y C +++ G+ L + +
Sbjct: 75 FVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGL----LNDTKVYTVDLGRTV 130
Query: 422 QGQQPVAQAAP---------VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLV-- 470
P + P + S + + T +V
Sbjct: 131 TINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVIN 190
Query: 471 -----------C----ELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAH 515
C + SN + Q + V E + + A
Sbjct: 191 QLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAK 250
Query: 516 FEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD--FGIVILDILYCYEENSGVYECRA 573
F R + + D+VV + R G + I +E++G Y C A
Sbjct: 251 FLCRQSSGENCDVVV-NTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGA 309
Query: 574 TNKYGSDVTK-----------------------------ASLKCV------------SKT 592
+ ++ C
Sbjct: 310 HSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLW 369
Query: 593 NLILESQLPEVEWFYNGKKLPHGHRY--RTFHDFGIVILDILYCYEENSGVYECRATNKY 650
+ P + K + R G + + ++G Y C
Sbjct: 370 EGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDT 429
Query: 651 GSDVTKASLKCVSKTNLILESQLPELRRQPAGVP---DSEDGRPPQFTSEFQHLSNLSEG 707
T + NL + + + + VP + ++
Sbjct: 430 LWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYW------------ 477
Query: 708 EIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTC 767
+ + P +A + +V L + D G Y C
Sbjct: 478 ---------CKWNNTGCQALPSQDEGPSKAF--VNCDENSRLVSLTLNLVTRADEGWYWC 526
Query: 768 RATNKWGQAE-ISVNLECVVWSPSQTKLVYSLFEVP 802
E +V + V + SL +
Sbjct: 527 GVKQGHFYGETAAVYVA-VEERKAAGSRDVSLAKAD 561
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 79.7 bits (196), Expect = 4e-17
Identities = 32/194 (16%), Positives = 51/194 (26%), Gaps = 16/194 (8%)
Query: 200 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEF--LYNGKPIEASHRIRTVHA 257
G TS ++ +S E E++ F+ + ++ P I
Sbjct: 6 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65
Query: 258 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLK 317
L + I G Y CR + +L V +P + H + +
Sbjct: 66 TFF--LVVTAANISHDGNYLCRMKLGETEVTKQEHLSVV-----KPLTLSVHSERSQ-FP 117
Query: 318 DGDSAHFECTLTPVNDPELKVEWFHNG----KPIFHKNRVKMVSDFGFVVMDIAYVQSHD 373
D CT+ P V+W P V D V +
Sbjct: 118 DFSVLTVTCTVN--AFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPW 175
Query: 374 SGEYVCRAWNKYGE 387
C N E
Sbjct: 176 HLPVTCVGKNDKEE 189
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 2e-11
Identities = 25/184 (13%), Positives = 40/184 (21%), Gaps = 42/184 (22%)
Query: 511 GQSAHFEARLTPVT-DPDLVVEWFYNGKKL-----------------PHGHRYRTFHDFG 552
G+ + V+ P++ V WF G P +
Sbjct: 6 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL------------ 600
L + + G Y CR + L V L + S+
Sbjct: 66 TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVT 125
Query: 601 --------PEVEWFYNGKKLPH----GHRYRTFHDFGIVILDILYCYEENSGVYECRATN 648
P V+W P D + + L + C N
Sbjct: 126 CTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKN 185
Query: 649 KYGS 652
Sbjct: 186 DKEE 189
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 6e-09
Identities = 24/200 (12%), Positives = 39/200 (19%), Gaps = 55/200 (27%)
Query: 601 PEVEWFYNGKKL-----------------PHGHRYRTFHDFGIVILDILYCYEENSGVYE 643
EV WF G P + L + + G Y
Sbjct: 24 IEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYL 83
Query: 644 CRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSN 703
CR + L V P + +
Sbjct: 84 CRMKLGETEVTKQEHLSVVK---------------------------PLTLSVHSERSQ- 115
Query: 704 LSEGEIAHFE--ASLIPVGDQTMTVEFLYNG----KPIEASHRIRTVHAFGMVVLEILGT 757
+ + + V++L P A+ + + V L
Sbjct: 116 FPDFSVLTVTCTVN----AFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSL 171
Query: 758 KIEDTGVYTCRATNKWGQAE 777
TC N +A
Sbjct: 172 PKPWHLPVTCVGKNDKEEAH 191
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 1e-06
Identities = 36/242 (14%), Positives = 55/242 (22%), Gaps = 67/242 (27%)
Query: 58 GPEETFAKPVFIVPLKPE-----FKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG 112
G T V L PE FKLG + L ++ + IF P
Sbjct: 6 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHH--------DVIFIEWPFR-- 55
Query: 113 SRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPK 172
F L +T G Y CR GET + + S +
Sbjct: 56 GFFDIHRSANTFFLVVTAANISHDGNYLCRMKL--GETEVTKQEHLSVVK---------- 103
Query: 173 GEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPV 230
P + + + + +
Sbjct: 104 -----------------------------PLTLSVHSERSQ-FPDFSVLTVTCTVN---- 129
Query: 231 GDQTMTVEFLYNG----KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 286
V++L P A+ + + V L TC N +
Sbjct: 130 AFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEE 189
Query: 287 AE 288
A
Sbjct: 190 AH 191
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 2e-05
Identities = 13/95 (13%), Positives = 24/95 (25%), Gaps = 18/95 (18%)
Query: 319 GDSAHFECTLTPVN-DPELKVEWFHNGKPIF-----------------HKNRVKMVSDFG 360
G+ V+ PE++V WF G + +
Sbjct: 6 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + G Y+CR E + +
Sbjct: 66 TFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLS 100
|
| >2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 2e-04
Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 6/103 (5%)
Query: 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEF--LYNGKPIEASHRIRTVHA 746
G TS ++ +S E E++ F+ + ++ P I
Sbjct: 6 GERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSAN 65
Query: 747 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSP 789
L + I G Y CR G+ E++ V P
Sbjct: 66 TFF--LVVTAANISHDGNYLCRMKL--GETEVTKQEHLSVVKP 104
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 5e-17
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
+ I L +K + A F+C V+D ++ +W+ NG + R+ + F
Sbjct: 8 QLEVLQDIADLT-VKAAEQAVFKCE---VSDEKVTGKWYKNGVEVRPSKRITISHVGRFH 63
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGE 387
+ I V+ D G+Y
Sbjct: 64 KLVIDDVRPEDEGDYTFVPDGYALS 88
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 6e-15
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
+ + + I+D+T +K + A F+ V+D + +W+ NG ++ R H
Sbjct: 6 SGQLEVLQDIADLT-VKAAEQAVFKCE---VSDEKVTGKWYKNGVEVRPSKRITISHVGR 61
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588
L I E+ G Y S S K
Sbjct: 62 FHKLVIDDVRPEDEGDYTFVPDGYALS----LSAKL 93
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 2e-14
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 8/101 (7%)
Query: 202 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
+ Q +++L+ E A F+ V D+ +T ++ NG + S RI H
Sbjct: 8 QLEVL---QDIADLTVKAAEQAVFKCE---VSDEKVTGKWYKNGVEVRPSKRITISHVGR 61
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSK 300
L I + ED G YT +N + S
Sbjct: 62 FHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEIKVSG 102
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 1e-13
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Query: 691 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
+ Q +++L+ E A F+ V D+ +T ++ NG + S RI H
Sbjct: 8 QLEVL---QDIADLTVKAAEQAVFKCE---VSDEKVTGKWYKNGVEVRPSKRITISHVGR 61
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785
L I + ED G YT +N +
Sbjct: 62 FHKLVIDDVRPEDEGDYTFVPDGYALSLSAKLNFLEI 98
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 62.4 bits (152), Expect = 3e-12
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 4/93 (4%)
Query: 58 GPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT 117
G + + + + + A+ + +V +D + +W NG + R
Sbjct: 1 GSSGSSGQLEVLQDIADL-TVKAAEQAVFKCEV---SDEKVTGKWYKNGVEVRPSKRITI 56
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGET 150
+ F L + +V D+G YT A
Sbjct: 57 SHVGRFHKLVIDDVRPEDEGDYTFVPDGYALSL 89
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 8e-09
Identities = 20/89 (22%), Positives = 28/89 (31%), Gaps = 17/89 (19%)
Query: 579 SDVT-----KASLKC-VSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDIL 632
+D+T +A KC VS +W+ NG ++ R H L I
Sbjct: 16 ADLTVKAAEQAVFKCEVSDEK-------VTGKWYKNGVEVRPSKRITISHVGRFHKLVID 68
Query: 633 YCYEENSGVYECRATNKYGSDVTKASLKC 661
E+ G Y S S K
Sbjct: 69 DVRPEDEGDYTFVPDGYALS----LSAKL 93
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 7e-17
Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 8/93 (8%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
QP ++SL + GD C + D + W +G + NR ++ +
Sbjct: 8 QPWGVPVEVESLL-VHPGDLLQLRC---RLRDDVQSINWLRDGVQLVESNRTRITGE--- 60
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+++ DSG Y C + G D T ++
Sbjct: 61 -EVEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 3e-14
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 7/96 (7%)
Query: 491 PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD 550
P P + + + G + D + W +G +L +R R +
Sbjct: 4 PEQAQPWGVPVEVESLLVHPGDLLQLRC---RLRDDVQSINWLRDGVQLVESNRTRITGE 60
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+++ +SG+Y C ++ GSD T S+
Sbjct: 61 ----EVEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 1e-12
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 9/101 (8%)
Query: 56 PSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRF 115
P+ PE A+P + + L L ++ D I W+ +G L +R
Sbjct: 1 PTLPE--QAQPWGVPVEVESLLVHPGDLLQLRCRLR---DDVQSINWLRDGVQLVESNRT 55
Query: 116 KTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ T + +++ + D G+Y C + +G T ++
Sbjct: 56 RITGE----EVEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 2e-12
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
P E + L + G++ + D ++ +L +G + S+R R
Sbjct: 9 PWGVPVEVESLL-VHPGDLLQLRC---RLRDDVQSINWLRDGVQLVESNRTRITGE---- 60
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
+E+ + D+G+Y C ++ G ++
Sbjct: 61 EVEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 2e-12
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
P E + L + G++ + D ++ +L +G + S+R R
Sbjct: 9 PWGVPVEVESLL-VHPGDLLQLRC---RLRDDVQSINWLRDGVQLVESNRTRITGE---- 60
Query: 751 VLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+E+ + D+G+Y C ++ G ++
Sbjct: 61 EVEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 2e-10
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
+ W +G +L +R R + +++ +SG+Y C ++ GSD T S+
Sbjct: 38 QSINWLRDGVQLVESNRTRITGE----EVEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 7e-17
Identities = 17/82 (20%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
+ + +E + G++AHFE L+ +P++ +W G+P+ +++ D
Sbjct: 4 ALIEVEKPLYGVE-VFVGETAHFEIELS---EPDVHGQWKLKGQPLAASPDCEIIEDGKK 59
Query: 362 VVMDIAYVQSHDSGEYVCRAWN 383
++ + Q +GE +A N
Sbjct: 60 HILILHNCQLGMTGEVSFQAAN 81
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 5e-16
Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
+ + V + G++AHFE +++PD+ +W G+ L D I
Sbjct: 6 IEVEKPLYGVE-VFVGETAHFEIE---LSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHI 61
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L + C +G +A N + A+LK
Sbjct: 62 LILHNCQLGMTGEVSFQAAN----TKSAANLK 89
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 5e-15
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGM 260
+ + + GE AHFE I + + + ++ G+P+ AS +
Sbjct: 4 ALIEVEKPLYGVE-VFVGETAHFE---IELSEPDVHGQWKLKGQPLAASPDCEIIEDGKK 59
Query: 261 VVLEILGTKIEDTGVYTCRATNKWGQAEISV 291
+L + ++ TG + +A N A + V
Sbjct: 60 HILILHNCQLGMTGEVSFQAANTKSAANLKV 90
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 5e-15
Identities = 18/91 (19%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGM 749
+ + + GE AHFE I + + + ++ G+P+ AS +
Sbjct: 4 ALIEVEKPLYGVE-VFVGETAHFE---IELSEPDVHGQWKLKGQPLAASPDCEIIEDGKK 59
Query: 750 VVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
+L + ++ TG + +A N A + V
Sbjct: 60 HILILHNCQLGMTGEVSFQAANTKSAANLKV 90
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-11
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 4/82 (4%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
A PL ++ + H E ++ ++P++ +W G+PL + D
Sbjct: 4 ALIEVEKPLYGV-EVFVGETAHFEIEL---SEPDVHGQWKLKGQPLAASPDCEIIEDGKK 59
Query: 124 VTLDLTEVYDRDQGIYTCRAWN 145
L L G + +A N
Sbjct: 60 HILILHNCQLGMTGEVSFQAAN 81
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 4e-09
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 12/79 (15%)
Query: 583 KASLKC-VSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 641
A + +S+ + +W G+ L D IL + C +G
Sbjct: 22 TAHFEIELSEPD-------VHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGE 74
Query: 642 YECRATNKYGSDVTKASLK 660
+A N + A+LK
Sbjct: 75 VSFQAAN----TKSAANLK 89
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 7e-17
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 3/93 (3%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
PK + + ++ +K G + + E P+ W + + +
Sbjct: 2 KPKILTASRKIK-IKAGFTHNLEVDFI--GAPDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + DSG Y + N+ GED +
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 6e-15
Identities = 15/94 (15%), Positives = 26/94 (27%), Gaps = 5/94 (5%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTFHDFGI 553
PK +T + +K G + + E PD W
Sbjct: 2 KPKILTASRKIK-IKAGFTHNLEV---DFIGAPDPTATWTVGDSGAALAPELLVDAKSST 57
Query: 554 VILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
+ +SG Y+ + N+ G D +
Sbjct: 58 TSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 1e-13
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 3/92 (3%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
P+ + + + + G + E I G T + + +
Sbjct: 2 KPKILTASRKIK-IKAGFTHNLEVDFI--GAPDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
+ K D+G Y + N+ G+ E +
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 1e-13
Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 3/92 (3%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
P+ + + + + G + E I G T + + +
Sbjct: 2 KPKILTASRKIK-IKAGFTHNLEVDFI--GAPDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 751 VLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+ K D+G Y + N+ G+ E +
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 7e-13
Identities = 17/95 (17%), Positives = 25/95 (26%), Gaps = 9/95 (9%)
Query: 65 KPVFIVPLKP-EFKLGEAQPLHLEAQV--EPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
KP + + + K G +LE P P W L A
Sbjct: 2 KPKILTASRKIKIKAGF--THNLEVDFIGAPD--P--TATWTVGDSGAALAPELLVDAKS 55
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
++ D G Y + N GE +
Sbjct: 56 STTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-10
Identities = 8/60 (13%), Positives = 14/60 (23%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
P W + +SG Y+ + N+ G D +
Sbjct: 32 PTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 7e-17
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 299 SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD 358
S F + + G F + DP+L+V+W+ NG+ I +
Sbjct: 3 SGSSGAAFAKILDPAYQVDKGGRVRFVVE---LADPKLEVKWYKNGQEIRPSTKYIFEHK 59
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
++ I Q D EY A G++ +
Sbjct: 60 GCQRILFINNCQMTDDSEYYVTA----GDEKCSTELF 92
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 2e-15
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 7/95 (7%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
+ F + Q+ +G F + DP L V+W+ NG+++ +Y H
Sbjct: 5 SSGAAFAKILDPAYQVDKGGRVRFVVE---LADPKLEVKWYKNGQEIRPSTKYIFEHKGC 61
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
IL I C + Y A G + L
Sbjct: 62 QRILFINNCQMTDDSEYYVTA----GDEKCSTELF 92
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 3e-13
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 197 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 256
S F + +G F + D + V++ NG+ I S + H
Sbjct: 2 SSGSSGAAFAKILDPAYQVDKGGRVRFVVE---LADPKLEVKWYKNGQEIRPSTKYIFEH 58
Query: 257 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 291
+L I ++ D Y A ++ E+ V
Sbjct: 59 KGCQRILFINNCQMTDDSEYYVTAGDEKCSTELFV 93
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 3e-13
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 686 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 745
S F + +G F + D + V++ NG+ I S + H
Sbjct: 2 SSGSSGAAFAKILDPAYQVDKGGRVRFVVE---LADPKLEVKWYKNGQEIRPSTKYIFEH 58
Query: 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
+L I ++ D Y A ++ E+ V
Sbjct: 59 KGCQRILFINNCQMTDDSEYYVTAGDEKCSTELFV 93
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 3e-13
Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
+ F L P +++ + + ++ DP L+++W NG+ + +++
Sbjct: 6 SGAAFAKILDPAYQVDKGGRVRFVVEL---ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQ 62
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
L + D Y AG+ ST ++
Sbjct: 63 RILFINNCQMTDDSEYYVT----AGDEKCSTELF 92
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-08
Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 10/78 (12%)
Query: 583 KASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVY 642
+ L EV+W+ NG+++ +Y H IL I C + Y
Sbjct: 25 RVRFVVE------LADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEY 78
Query: 643 ECRATNKYGSDVTKASLK 660
A G + L
Sbjct: 79 YVTA----GDEKCSTELF 92
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 1e-16
Identities = 20/97 (20%), Positives = 42/97 (43%), Gaps = 8/97 (8%)
Query: 300 KGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDF 359
+G+ ++ ++ +++G SA F C ++P N V WF + P+ ++ +
Sbjct: 10 QGRRVHIIEDLEDVD-VQEGSSATFRCRISPANYEP--VHWFLDKTPLHANELNEIDAQP 66
Query: 360 GFV-VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
G V+ + + DSG A G+ A ++
Sbjct: 67 GGYHVLTLRQLALKDSGTIYFEA----GDQRASAALR 99
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 70.9 bits (174), Expect = 5e-15
Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 8/114 (7%)
Query: 487 AQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR 546
+ I + DV ++EG SA F R++P V WF + L
Sbjct: 5 SSGLVQGRRVHIIEDLEDVD-VQEGSSATFRCRISPANYEP--VHWFLDKTPLHANELNE 61
Query: 547 TF-HDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQ 599
G +L + ++SG A G A+L+ K ++ S
Sbjct: 62 IDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKPSVFSRSG 111
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 6e-12
Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 8/110 (7%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV 124
+ I L+ + E ++ P N + W + PL + A G
Sbjct: 13 RVHIIEDLEDV-DVQEGSSATFRCRISPANYE--PVHWFLDKTPLHANELNEIDAQPGGY 69
Query: 125 -TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKG 173
L L ++ +D G AG+ S + + K S+ R+ G
Sbjct: 70 HVLTLRQLALKDSGTIYFE----AGDQRASAALRVTEKPSVFSRSGPSSG 115
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 1e-11
Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 4/106 (3%)
Query: 200 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
GR + + + + EG A F + V + + P+ A+ G
Sbjct: 11 GRRVHIIEDLEDVD-VQEGSSATFRCRI--SPANYEPVHWFLDKTPLHANELNEIDAQPG 67
Query: 260 MV-VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPP 304
VL + ++D+G A ++ A + V + S+ P
Sbjct: 68 GYHVLTLRQLALKDSGTIYFEAGDQRASAALRVTEKPSVFSRSGPS 113
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 1e-10
Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 4/93 (4%)
Query: 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
GR + + + + EG A F + V + + P+ A+ G
Sbjct: 11 GRRVHIIEDLEDVD-VQEGSSATFRCRI--SPANYEPVHWFLDKTPLHANELNEIDAQPG 67
Query: 749 MV-VLEILGTKIEDTGVYTCRATNKWGQAEISV 780
VL + ++D+G A ++ A + V
Sbjct: 68 GYHVLTLRQLALKDSGTIYFEAGDQRASAALRV 100
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-08
Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 5/73 (6%)
Query: 601 PEVEWFYNGKKLPHGHRYRTF-HDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
V WF + L G +L + ++SG A G A+L
Sbjct: 43 EPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFEA----GDQRASAAL 98
Query: 660 KCVSKTNLILESQ 672
+ K ++ S
Sbjct: 99 RVTEKPSVFSRSG 111
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 2e-16
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 8/96 (8%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL-PHGHRYRTFHD 550
++ F ++ Q+ +G + D D V+W NG+++ G +Y
Sbjct: 12 EKKSTAFQKKLEPAYQVSKGHKIRLTVE---LADHDAEVKWLKNGQEIQMSGSKYIFESI 68
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
L I C + Y+C G + L
Sbjct: 69 GAKRTLTISQCSLADDAAYQCVV----GGEKCSTEL 100
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 4e-16
Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 8/93 (8%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI-FHKNRVKMVSDFGF 361
F ++ + G + D + +V+W NG+ I ++ S
Sbjct: 15 STAFQKKLEPAYQVSKGHKIRLTVE---LADHDAEVKWLKNGQEIQMSGSKYIFESIGAK 71
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ I+ D Y C G + +
Sbjct: 72 RTLTISQCSLADDAAYQCVV----GGEKCSTEL 100
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 3e-13
Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 4/99 (4%)
Query: 194 VPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRI 252
++ + F + + +S+G + D V++L NG+ I+ S +
Sbjct: 7 HSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVE---LADHDAEVKWLKNGQEIQMSGSKY 63
Query: 253 RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 291
L I + D Y C + E+ V
Sbjct: 64 IFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTELFV 102
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 3e-13
Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 4/99 (4%)
Query: 683 VPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRI 741
++ + F + + +S+G + D V++L NG+ I+ S +
Sbjct: 7 HSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVE---LADHDAEVKWLKNGQEIQMSGSKY 63
Query: 742 RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
L I + D Y C + E+ V
Sbjct: 64 IFESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTELFV 102
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 7e-12
Identities = 18/95 (18%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL-GSRFKTTADFG 122
F L+P +++ + + L ++ D + +++W+ NG+ +++ GS++ +
Sbjct: 14 KSTAFQKKLEPAYQVSKGHKIRLTVEL---ADHDAEVKWLKNGQEIQMSGSKYIFESIGA 70
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
TL +++ D Y C G ST ++
Sbjct: 71 KRTLTISQCSLADDAAYQCV----VGGEKCSTELF 101
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 3e-08
Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 11/78 (14%)
Query: 583 KASLKCVSKTNLILESQLPEVEWFYNGKKL-PHGHRYRTFHDFGIVILDILYCYEENSGV 641
K L L EV+W NG+++ G +Y L I C +
Sbjct: 33 KIRLTVE------LADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAA 86
Query: 642 YECRATNKYGSDVTKASL 659
Y+C G + L
Sbjct: 87 YQCVV----GGEKCSTEL 100
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 80.2 bits (197), Expect = 3e-16
Identities = 25/202 (12%), Positives = 61/202 (30%), Gaps = 29/202 (14%)
Query: 203 PQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEASH-RIRTVHAFG 259
P + + ++ G+ + G ++ A+ + + + G
Sbjct: 159 PTLKVQVPNA-SVDVGDDVLLRCQVE----GRGLEQAGWILTELEQSATVMKSGGLPSLG 213
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDG 319
+ + + T + TC A N G+AE+SV + F + ++ ++
Sbjct: 214 LTLANV--TSDLNRKNVTCWAENDVGRAEVSVQVN---------VSFPASVQLHTAVEM- 261
Query: 320 DSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRV-------KMVSDFGFVVMDIAYVQSH 372
++ P + W NG + + + + +
Sbjct: 262 HHWCIPFSVD--GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHV 319
Query: 373 DSGEYVCRAWNKYGEDFTRATI 394
++G Y A N +G+
Sbjct: 320 NNGNYTLLAANPFGQASASIMA 341
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 78.6 bits (193), Expect = 1e-15
Identities = 24/190 (12%), Positives = 46/190 (24%), Gaps = 29/190 (15%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL-PHGHRYRTFHDFG 552
P Q+ + + + G ++ W + + G
Sbjct: 157 GVPTLKVQVPNAS-VDVGDDVLLRCQVEGRGLEQ--AGWILTELEQSATVMKSGGLPSLG 213
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQ------------- 599
+ + ++ + N C A N G + ++ L +
Sbjct: 214 LTLANVTS--DLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVD 271
Query: 600 ---LPEVEWFYNGKKLPHGHRYRTFHDFGIVI-------LDILYCYEENSGVYECRATNK 649
P + W +NG L T L + N+G Y A N
Sbjct: 272 GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 331
Query: 650 YGSDVTKASL 659
+G
Sbjct: 332 FGQASASIMA 341
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 71.3 bits (174), Expect = 2e-13
Identities = 27/193 (13%), Positives = 49/193 (25%), Gaps = 46/193 (23%)
Query: 600 LPEVEWFYNGKKL-PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 658
L + W + + G+ + ++ + N C A N G
Sbjct: 187 LEQAGWILTELEQSATVMKSGGLPSLGLTLANVTS--DLNRKNVTCWAENDVGRAEVSVQ 244
Query: 659 LKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEI-AHFEASLI 717
+ F + Q + + F
Sbjct: 245 VN-------------------------------VSFPASVQLHTAVEMHHWCIPFSVD-- 271
Query: 718 PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV-------VLEILGTKIEDTGVYTCRAT 770
G ++ +L+NG + + I T L + + G YT A
Sbjct: 272 --GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA 329
Query: 771 NKWGQAEISVNLE 783
N +GQA S+
Sbjct: 330 NPFGQASASIMAA 342
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 64.8 bits (157), Expect = 3e-11
Identities = 33/209 (15%), Positives = 53/209 (25%), Gaps = 60/209 (28%)
Query: 95 DPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEV-YDRDQGIYTCRAWNLAGETFTS 153
+ WI LE + + + L L V D ++ TC A N G S
Sbjct: 185 RGLEQAGWILTE--LEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVS 242
Query: 154 TTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLS 213
+ F + Q +
Sbjct: 243 VQVN---------------------------------------------VSFPASVQLHT 257
Query: 214 NLSEGEI-AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV-------VLEI 265
+ F G ++ +L+NG + + I T L +
Sbjct: 258 AVEMHHWCIPFSVD----GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL 313
Query: 266 LGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+ G YT A N +GQA S+
Sbjct: 314 NQPTHVNNGNYTLLAANPFGQASASIMAA 342
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 50.5 bits (120), Expect = 1e-06
Identities = 23/146 (15%), Positives = 35/146 (23%), Gaps = 11/146 (7%)
Query: 21 GQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQ---RQPSGPEETFAKPVFIVPLKPEFK 77
++ + + + GL G E V +
Sbjct: 197 LEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSV-QVNVSFPASVQL 255
Query: 78 LGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTA-------DFGFVTLDLTE 130
+ H P + W+FNG L S T L L +
Sbjct: 256 HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQ 315
Query: 131 VYDRDQGIYTCRAWNLAGETFTSTTI 156
+ G YT A N G+ S
Sbjct: 316 PTHVNNGNYTLLAANPFGQASASIMA 341
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 8e-06
Identities = 10/95 (10%), Positives = 22/95 (23%), Gaps = 6/95 (6%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN-RVKMVSDFG 360
P + + + GD C + + W + + G
Sbjct: 157 GVPTLKVQVPNAS-VDVGDDVLLRCQVE--GRGLEQAGWILTELEQSATVMKSGGLPSLG 213
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ ++ + C A N G +
Sbjct: 214 LTLANVT--SDLNRKNVTCWAENDVGRAEVSVQVN 246
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 2e-04
Identities = 15/94 (15%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 692 PQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEASH-RIRTVHAFG 748
P + + ++ G+ + G ++ A+ + + + G
Sbjct: 159 PTLKVQVPNA-SVDVGDDVLLRCQVE----GRGLEQAGWILTELEQSATVMKSGGLPSLG 213
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+ + + T + TC A N G+AE+SV +
Sbjct: 214 LTLANV--TSDLNRKNVTCWAENDVGRAEVSVQV 245
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 4e-16
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 8/97 (8%)
Query: 299 SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD 358
K F+ +S+E + G A FE +KV W G I N+ + ++
Sbjct: 4 GKKPVSAFSKKPRSVE-VAAGSPAVFEAE---TERAGVKVRWQRGGSDISASNKYGLATE 59
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + V D G Y A G + +K
Sbjct: 60 GTRHTLTVREVGPADQGSYAVIA----GSSKVKFDLK 92
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 2e-14
Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 8/92 (8%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
F + V + G A FEA + V W G + ++Y +
Sbjct: 9 SAFSKKPRSVE-VAAGSPAVFEAE---TERAGVKVRWQRGGSDISASNKYGLATEGTRHT 64
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L + + G Y A GS K LK
Sbjct: 65 LTVREVGPADQGSYAVIA----GSSKVKFDLK 92
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 4e-11
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
F + ++ P EA+ E +K+ W G + +++ +
Sbjct: 7 PVSAFSKKPRSV-EVAAGSPAVFEAETE---RAGVKVRWQRGGSDISASNKYGLATEGTR 62
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
TL + EV DQG Y AG + +
Sbjct: 63 HTLTVREVGPADQGSYAVI----AGSSKVKFDL 91
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 6e-11
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
Query: 195 PDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT 254
P+ F+ + + + ++ G A FEA + V + G I AS++
Sbjct: 1 PEPGKKPVSAFSKKPRSVE-VAAGSPAVFEAE---TERAGVKVRWQRGGSDISASNKYGL 56
Query: 255 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 291
L + D G Y A + + ++ V
Sbjct: 57 ATEGTRHTLTVREVGPADQGSYAVIAGSSKVKFDLKV 93
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 6e-11
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 4/97 (4%)
Query: 684 PDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT 743
P+ F+ + + + ++ G A FEA + V + G I AS++
Sbjct: 1 PEPGKKPVSAFSKKPRSVE-VAAGSPAVFEAE---TERAGVKVRWQRGGSDISASNKYGL 56
Query: 744 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
L + D G Y A + + ++ V
Sbjct: 57 ATEGTRHTLTVREVGPADQGSYAVIAGSSKVKFDLKV 93
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 9e-09
Identities = 14/79 (17%), Positives = 23/79 (29%), Gaps = 12/79 (15%)
Query: 583 KASLKC-VSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 641
A + + +V W G + ++Y + L + + G
Sbjct: 25 PAVFEAETERAG-------VKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGS 77
Query: 642 YECRATNKYGSDVTKASLK 660
Y A GS K LK
Sbjct: 78 YAVIA----GSSKVKFDLK 92
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 4e-16
Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 13/110 (11%)
Query: 285 GQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNG 344
S L + P KFT +++ E +G +A C L+ VEW+
Sbjct: 5 SSGRTSAMLTV----RALPIKFTEGLRNEE-ATEGATAVLRCELSK--MAP--VEWWKGH 55
Query: 345 KPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ + +R + D + I + + D+GEY+C G++ T A +
Sbjct: 56 ETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC----GKERTSAML 101
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 3e-14
Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 9/95 (9%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF 551
A KF + + EG +A L+ VEW+ + L G R+ D
Sbjct: 16 RALPIKFTEGLRNEE-ATEGATAVLRCELSK--MAP--VEWWKGHETLRDGDRHSLRQDG 70
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
L I E++G Y C G + T A L
Sbjct: 71 ARCELQIRGLVAEDAGEYLCMC----GKERTSAML 101
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 4e-12
Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 17/111 (15%)
Query: 200 GRPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA 257
P +FT + L N EG A L + VE+ + + R
Sbjct: 17 ALPIKFT---EGLRNEEATEGATAVLRCELSKMA----PVEWWKGHETLRDGDRHSLRQD 69
Query: 258 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTS 308
L+I G ED G Y C + A ++V + P +S
Sbjct: 70 GARCELQIRGLVAEDAGEYLCMCGKERTSAMLTV--------RAMPSGPSS 112
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 3e-11
Identities = 22/94 (23%), Positives = 32/94 (34%), Gaps = 9/94 (9%)
Query: 689 GRPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA 746
P +FT + L N EG A L + VE+ + + R
Sbjct: 17 ALPIKFT---EGLRNEEATEGATAVLRCELSKMA----PVEWWKGHETLRDGDRHSLRQD 69
Query: 747 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
L+I G ED G Y C + A ++V
Sbjct: 70 GARCELQIRGLVAEDAGEYLCMCGKERTSAMLTV 103
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 3e-09
Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 13/78 (16%)
Query: 583 KASLKC-VSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 641
A L+C +SK VEW+ + L G R+ D L I E++G
Sbjct: 36 TAVLRCELSKM--------APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGE 87
Query: 642 YECRATNKYGSDVTKASL 659
Y C G + T A L
Sbjct: 88 YLCMC----GKERTSAML 101
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 8e-09
Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 9/92 (9%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVT 125
F L+ E + E L ++ +EW + L G R D
Sbjct: 20 IKFTEGLRNE-EATEGATAVLRCELSK--MA--PVEWWKGHETLRDGDRHSLRQDGARCE 74
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
L + + D G Y C G+ TS +
Sbjct: 75 LQIRGLVAEDAGEYLCM----CGKERTSAMLT 102
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 76.6 bits (188), Expect = 5e-16
Identities = 25/146 (17%), Positives = 38/146 (26%), Gaps = 9/146 (6%)
Query: 250 HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSH 309
H G + + ++ D G Y C+ G A L V P T
Sbjct: 73 HFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLT-VLV----KPSGTRC 127
Query: 310 IKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYV 369
+ G+ +C L+ EW + +
Sbjct: 128 FVDGS-EEIGNDFKLKCE-PKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVIS--VKNA 183
Query: 370 QSHDSGEYVCRAWNKYGEDFTRATIK 395
S SG Y C N+ G D +
Sbjct: 184 SSEYSGTYSCTVQNRVGSDQCMLRLD 209
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 2e-09
Identities = 33/199 (16%), Positives = 55/199 (27%), Gaps = 51/199 (25%)
Query: 510 EGQSAHFE--ARLTPVTDPDLVVEWF---------------YNGKKLPHG---------H 543
+G++A+ L+P L +EW Y+G K+ H
Sbjct: 14 KGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVH 73
Query: 544 RYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV---SKTNLILESQL 600
G +++ + G Y+C+ G K L + S T ++
Sbjct: 74 FTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSE 133
Query: 601 ------------------PEVEWFYNGKKLPHGHRYRTFHDFG-IVILDILYCYEENSGV 641
+ EW + I + + E SG
Sbjct: 134 EIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNAS---SEYSGT 190
Query: 642 YECRATNKYGSDVTKASLK 660
Y C N+ GSD L
Sbjct: 191 YSCTVQNRVGSDQCMLRLD 209
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 1e-08
Identities = 34/237 (14%), Positives = 58/237 (24%), Gaps = 61/237 (25%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWF---------------YNGKKLPHG------- 615
G L C + + ++EW Y+G K+
Sbjct: 15 GETAY---LPCKFTLS-PEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKG 70
Query: 616 --HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL 673
H G +++ + G Y+C+ G K L +
Sbjct: 71 RVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLV---------- 120
Query: 674 PELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGK 733
P T F S G + G + E+
Sbjct: 121 -----------------KPSGTRCFVDGS-EEIGNDFKLKCE-PKEGSLPLQFEWQKLSD 161
Query: 734 PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPS 790
V+ + E +G Y+C N+ G + + L+ V PS
Sbjct: 162 SQTMPTPWLAEMTSP--VISVKNASSEYSGTYSCTVQNRVGSDQCMLRLD--VVPPS 214
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 1e-05
Identities = 32/251 (12%), Positives = 60/251 (23%), Gaps = 70/251 (27%)
Query: 69 IVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG--------------- 112
P + E GE L + + P++ L IEW+ + ++
Sbjct: 4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDN 63
Query: 113 ---------SRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKES 163
G ++++T + D G Y C+ G +
Sbjct: 64 YYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLL------- 116
Query: 164 LIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF 223
+ P T F S G
Sbjct: 117 ---------------TVLV-------------------KPSGTRCFVDGS-EEIGNDFKL 141
Query: 224 EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNK 283
+ G + E+ V+ + E +G Y+C N+
Sbjct: 142 KCE-PKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSP--VISVKNASSEYSGTYSCTVQNR 198
Query: 284 WGQAEISVNLE 294
G + + L+
Sbjct: 199 VGSDQCMLRLD 209
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 2e-04
Identities = 18/97 (18%), Positives = 25/97 (25%), Gaps = 6/97 (6%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF 551
V P D + + G + L EW +
Sbjct: 118 VLVKPSGTRCFVDGS-EEIGNDFKLKCE-PKEGSLPLQFEWQKLSDSQTMPTPWLAEMTS 175
Query: 552 G-IVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
I + + E SG Y C N+ GSD L
Sbjct: 176 PVISVKNAS---SEYSGTYSCTVQNRVGSDQCMLRLD 209
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 3e-04
Identities = 18/139 (12%), Positives = 36/139 (25%), Gaps = 14/139 (10%)
Query: 27 LETQHPMGAAGLEKVQEVEHALAGKYQ---RQPSGPEETFA------KPVFIVPLKPEFK 77
G A + V ++ + G YQ ++ G KP
Sbjct: 75 TSNDVKSGDASI-NVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDG-S 132
Query: 78 LGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQG 137
L+ + + + L+ EW + + + + + G
Sbjct: 133 EEIGNDFKLKCEPK-EGSLPLQFEWQKLSDSQTMPTPWLAEMTSP--VISVKNASSEYSG 189
Query: 138 IYTCRAWNLAGETFTSTTI 156
Y+C N G +
Sbjct: 190 TYSCTVQNRVGSDQCMLRL 208
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 8e-16
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 301 GQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG 360
G ++S + GD C + D + W +G + NR ++ +
Sbjct: 1 GSSGSSGVEVESFL-VHPGDLLQLRC---RLRDDVQSINWLRDGVQLAESNRTRITGE-- 54
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+++ DSG Y C + G D T ++
Sbjct: 55 --EVEVQDSVPADSGLYACVTSSPSGSDTTYFSV 86
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 7e-14
Identities = 16/94 (17%), Positives = 33/94 (35%), Gaps = 8/94 (8%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
+ ++ + G + D + W +G +L +R R
Sbjct: 1 GSSGSSGVEVESFL-VHPGDLLQLRC---RLRDDVQSINWLRDGVQLAESNRTR----IT 52
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+++ +SG+Y C ++ GSD T S+
Sbjct: 53 GEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSV 86
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 6e-13
Identities = 17/105 (16%), Positives = 37/105 (35%), Gaps = 8/105 (7%)
Query: 200 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
G E + + G++ + D ++ +L +G + S+R R
Sbjct: 1 GSSGSSGVEVESFL-VHPGDLLQLRC---RLRDDVQSINWLRDGVQLAESNRTR----IT 52
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPP 304
+E+ + D+G+Y C ++ G ++ D P
Sbjct: 53 GEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPSGPS 97
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 3e-12
Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 8/94 (8%)
Query: 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
G E + + G++ + D ++ +L +G + S+R R
Sbjct: 1 GSSGSSGVEVESFL-VHPGDLLQLRC---RLRDDVQSINWLRDGVQLAESNRTR----IT 52
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+E+ + D+G+Y C ++ G ++
Sbjct: 53 GEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSV 86
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 8e-12
Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 8/93 (8%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
+ V ++ F + L L ++ D I W+ +G L +R + T +
Sbjct: 2 SSGSSGVEVES-FLVHPGDLLQLRCRLR---DDVQSINWLRDGVQLAESNRTRITGE--- 54
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+++ + D G+Y C + +G T ++
Sbjct: 55 -EVEVQDSVPADSGLYACVTSSPSGSDTTYFSV 86
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 1e-09
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 13/82 (15%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 637
G + L+C L + + W +G +L +R R +++
Sbjct: 18 GDLLQ---LRCR------LRDDVQSINWLRDGVQLAESNRTR----ITGEEVEVQDSVPA 64
Query: 638 NSGVYECRATNKYGSDVTKASL 659
+SG+Y C ++ GSD T S+
Sbjct: 65 DSGLYACVTSSPSGSDTTYFSV 86
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 75.9 bits (186), Expect = 9e-16
Identities = 23/126 (18%), Positives = 43/126 (34%), Gaps = 9/126 (7%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSA 322
L ++D GVYT T+ + P +++ + DS
Sbjct: 73 LLFQMITMKDMGVYTLDMTD-ENYRRTQATVRFHVHQPVTQPFLQVTNTTVK---ELDSV 128
Query: 323 HFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAW 382
C ND ++W N + + R+ + + ++ I ++ D+GEY C
Sbjct: 129 TLTCL---SNDIGANIQWLFNSQSLQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEIS 183
Query: 383 NKYGED 388
N
Sbjct: 184 NPVSVR 189
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 55.1 bits (132), Expect = 1e-08
Identities = 21/164 (12%), Positives = 44/164 (26%), Gaps = 45/164 (27%)
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLE 184
+L + +D G+YT + T T+ + + +
Sbjct: 72 SLLFQMITMKDMGVYTLDMTDENYRR-TQATVRFHVHQPVTQPFLQVTN----------- 119
Query: 185 ESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGK 244
+ + E + D +++L+N +
Sbjct: 120 ----------------------------TTVKELDSVTLTCL---SNDIGANIQWLFNSQ 148
Query: 245 PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 288
++ + R+ +L I K ED G Y C +N
Sbjct: 149 SLQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEISNPVSVRR 190
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 3e-08
Identities = 24/191 (12%), Positives = 49/191 (25%), Gaps = 47/191 (24%)
Query: 506 TQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLP-------------------HGHRYR 546
Q+ E + P+ W+ + R
Sbjct: 9 PQVAEDNNVLLLVHNLPLALGA--FAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREI 66
Query: 547 TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL------ 600
+ + ++ I ++ GVY T++ V + Q+
Sbjct: 67 IYSNGSLLFQMI---TMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVK 123
Query: 601 ---------------PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECR 645
++W +N + L R + IL I E++G Y+C
Sbjct: 124 ELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNS--ILRIDPIKREDAGEYQCE 181
Query: 646 ATNKYGSDVTK 656
+N +
Sbjct: 182 ISNPVSVRRSN 192
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 4e-08
Identities = 25/181 (13%), Positives = 55/181 (30%), Gaps = 36/181 (19%)
Query: 614 HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL 673
+ R + + ++ I ++ GVY T++ V + Q+
Sbjct: 61 YSGREIIYSNGSLLFQMI---TMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQV 117
Query: 674 PELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGK 733
+ + E + D +++L+N +
Sbjct: 118 TN--------------------------TTVKELDSVTLTCL---SNDIGANIQWLFNSQ 148
Query: 734 PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE-ISVNLECVVWSPSQT 792
++ + R+ +L I K ED G Y C +N S+ L+ +++ P
Sbjct: 149 SLQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLD-IIFDPHHH 205
Query: 793 K 793
Sbjct: 206 H 206
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 8e-08
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 3/64 (4%)
Query: 94 NDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTS 153
ND I+W+FN + L+L R + + L + + D G Y C N S
Sbjct: 135 NDIGANIQWLFNSQSLQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEISNPVSVR-RS 191
Query: 154 TTIY 157
+I
Sbjct: 192 NSIK 195
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 1e-06
Identities = 19/101 (18%), Positives = 35/101 (34%), Gaps = 6/101 (5%)
Query: 483 QQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG 542
Q + + Q+++ T +KE S D ++W +N + L
Sbjct: 98 TQATVRFHVHQPVTQPFLQVTNTT-VKELDSVTLTCL---SNDIGANIQWLFNSQSLQLT 153
Query: 543 HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 583
R + I L I E++G Y+C +N +
Sbjct: 154 ERMTLSQNNSI--LRIDPIKREDAGEYQCEISNPVSVRRSN 192
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 1e-15
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 7/97 (7%)
Query: 299 SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD 358
S K + + + G +C ++ + +W NG P+ +R+K+V
Sbjct: 3 SGSSGLKILTPLTDQT-VNLGKEICLKCEISE--NIP--GKWTKNGLPVQESDRLKVVQK 57
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ IA + D G+YV A +
Sbjct: 58 GRIHKLVIANALTEDEGDYVFAPDA--YNVTLPAKVH 92
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 2e-13
Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
+ K +T ++D T + G+ + ++ ++ +W NG + R +
Sbjct: 5 SSGLKILTPLTDQT-VNLGKEICLKCEISE----NIPGKWTKNGLPVQESDRLKVVQKGR 59
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
I L I E+ G Y + A +
Sbjct: 60 IHKLVIANALTEDEGDYVFAPDA--YNVTLPAKVH 92
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 5e-12
Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 5/98 (5%)
Query: 197 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 256
S + + + ++ G+ + + + ++ NG P++ S R++ V
Sbjct: 2 SSGSSGLKILTPLTDQT-VNLGKEICLKCEISE----NIPGKWTKNGLPVQESDRLKVVQ 56
Query: 257 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+ L I ED G Y V++
Sbjct: 57 KGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHVI 94
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 5e-12
Identities = 15/98 (15%), Positives = 33/98 (33%), Gaps = 5/98 (5%)
Query: 686 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 745
S + + + ++ G+ + + + ++ NG P++ S R++ V
Sbjct: 2 SSGSSGLKILTPLTDQT-VNLGKEICLKCEISE----NIPGKWTKNGLPVQESDRLKVVQ 56
Query: 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
+ L I ED G Y V++
Sbjct: 57 KGRIHKLVIANALTEDEGDYVFAPDAYNVTLPAKVHVI 94
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-08
Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 11/79 (13%)
Query: 583 KASLKC-VSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 641
+ LKC +S+ +W NG + R + I L I E+ G
Sbjct: 24 EICLKCEISEN--------IPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGD 75
Query: 642 YECRATNKYGSDVTKASLK 660
Y + A +
Sbjct: 76 YVFAPDA--YNVTLPAKVH 92
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-08
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 7/92 (7%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
+ + PL + + + + L+ ++ N+ +W NG P++ R K
Sbjct: 6 SGLKILTPLTDQ-TVNLGKEICLKCEI----SENIPGKWTKNGLPVQESDRLKVVQKGRI 60
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTT 155
L + D+G Y A
Sbjct: 61 HKLVIANALTEDEGDYVFA--PDAYNVTLPAK 90
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 74.2 bits (182), Expect = 2e-15
Identities = 23/187 (12%), Positives = 51/187 (27%), Gaps = 29/187 (15%)
Query: 217 EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV-------LEILGTK 269
G + + D V + + R L+I
Sbjct: 10 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT 69
Query: 270 IEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLT 329
+D+G Y + G ++ L+ P + +A C +
Sbjct: 70 RDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYW---------ECSNATLTCEVL 120
Query: 330 PVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDF 389
D ELK + + + + ++Y ++ + C+A N+ ++
Sbjct: 121 EGTDVELK--LYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQES 167
Query: 390 TRATIKC 396
+ C
Sbjct: 168 EMEVVNC 174
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 65.4 bits (159), Expect = 2e-12
Identities = 24/179 (13%), Positives = 53/179 (29%), Gaps = 41/179 (22%)
Query: 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKL----------PHGHRYRTFHDFGIVILDIL 559
G + +TD V W + + + + I ++
Sbjct: 10 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNL- 68
Query: 560 YCYEENSGVYECRATNKYGSDVTKASL-----KCVSK-------TNLIL-----ESQLPE 602
++SG Y + G+ + +L + VSK +N L E E
Sbjct: 69 --TRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVE 126
Query: 603 VEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 661
++ + + L + + Y + ++C+A N+ + + C
Sbjct: 127 LKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 2e-06
Identities = 22/219 (10%), Positives = 54/219 (24%), Gaps = 67/219 (30%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKL----------PHGHRYRTFHDFGIV 627
G + L N + + EV W + + + +
Sbjct: 11 GHGIN---LNI---PNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLK 64
Query: 628 ILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSE 687
I ++ ++SG Y + G+ + +L +L + +
Sbjct: 65 IKNL---TRDDSGTYNVTVYSTNGTRILNKAL------DLRILEMVS------------- 102
Query: 688 DGRPPQFTSEFQHLSNLSEGEIAHFEASLI--PVGDQTMTVEFLYNGKPIEASHRIRTVH 745
P E A+L + + ++ + + + +
Sbjct: 103 ---KPMIYWECS-------------NATLTCEVLEGTDVELKLYQGKEHLRSLRQ----- 141
Query: 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784
+ + C+A N+ Q + C
Sbjct: 142 ------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 7e-06
Identities = 5/66 (7%), Positives = 20/66 (30%), Gaps = 11/66 (16%)
Query: 94 NDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTS 153
+++++ + L + ++ + + + C+A N +
Sbjct: 121 EGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEM 169
Query: 154 TTIYCS 159
+ C
Sbjct: 170 EVVNCP 175
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 9e-04
Identities = 15/116 (12%), Positives = 28/116 (24%), Gaps = 17/116 (14%)
Query: 706 EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV-------LEILGTK 758
G + + D V + + R L+I
Sbjct: 10 LGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLT 69
Query: 759 IEDTGVYTCRATNKWGQ--AEISVNLEC--------VVWSPSQTKLVYSLFEVPQP 804
+D+G Y + G +++L + W S L + E
Sbjct: 70 RDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDV 125
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 2e-15
Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 10/112 (8%)
Query: 285 GQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNG 344
G + E + P F +S + + +GDS EC ++ P K+ W N
Sbjct: 2 GHHHHHHSHE-----HKRAPMFIYKPQSKK-VLEGDSVKLECQIS--AIPPPKLFWKRNN 53
Query: 345 KPI-FHKNRVKMVSD-FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ + F+ +R+ + D G V + I V D+G Y A N+ G +
Sbjct: 54 EMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRL 105
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 2e-15
Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 7/108 (6%)
Query: 482 GQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKL- 539
G + AP FI + + EG S E + ++ P + W N + +
Sbjct: 2 GHHHHHHSHEHKRAPMFIYKPQSKK-VLEGDSVKLECQ---ISAIPPPKLFWKRNNEMVQ 57
Query: 540 PHGHRYRTFHD-FGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+ R + D G V L I ++++G Y A N+ G L
Sbjct: 58 FNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRL 105
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 64.0 bits (156), Expect = 1e-12
Identities = 24/112 (21%), Positives = 37/112 (33%), Gaps = 10/112 (8%)
Query: 198 EDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTV 255
E R P F + Q + EG+ E + + N + ++ +
Sbjct: 11 EHKRAPMFIYKPQSKK-VLEGDSVKLECQ--ISAIPPPKLFWKRNNEMVQFNTDRISLYQ 67
Query: 256 HAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFT 307
G V L I +D G YT A N+ G + L+ V P T
Sbjct: 68 DNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD-VT----ARPNQT 114
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 2e-12
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Query: 52 YQRQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQV--EPKNDPNLKIEWIFNGKPL 109
E P+FI + + K+ E + LE Q+ P P K+ W N + +
Sbjct: 2 GHHHHHHSHEHKRAPMFIYKPQSK-KVLEGDSVKLECQISAIPP--P--KLFWKRNNEMV 56
Query: 110 ELGSRFKTTA--DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ + + + G VTL + +V +D G YT A N AG T +T +
Sbjct: 57 QFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRL 105
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 2e-12
Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 7/105 (6%)
Query: 687 EDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTV 744
E R P F + Q + EG+ E + + N + ++ +
Sbjct: 11 EHKRAPMFIYKPQSKK-VLEGDSVKLECQ--ISAIPPPKLFWKRNNEMVQFNTDRISLYQ 67
Query: 745 HAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSP 789
G V L I +D G YT A N+ G + L+ V +
Sbjct: 68 DNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLD--VTAR 110
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 3e-10
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 601 PEVEWFYNGKKL-PHGHRYRTFHD-FGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 658
P++ W N + + + R + D G V L I ++++G Y A N+ G
Sbjct: 45 PKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTR 104
Query: 659 L 659
L
Sbjct: 105 L 105
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 2e-15
Identities = 27/174 (15%), Positives = 54/174 (31%), Gaps = 35/174 (20%)
Query: 231 GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 290
D+ +F + + + F L+I K +D +Y + G+ +
Sbjct: 39 SDKKKIAQFRKEKETFKEKDTYKL---FKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLE 95
Query: 291 VN-----LECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGK 345
E V K PK + + C + N + ++ + +GK
Sbjct: 96 KIFDLKIQERVSK-----PKISW---------TCINTTLTCEVM--NGTDPELNLYQDGK 139
Query: 346 PIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGK 399
+ RV + S ++ C A NK ++ + + C K
Sbjct: 140 HLKLSQRVITHK-----------WTTSLSAKFKCTAGNKVSKESSVEPVSCPEK 182
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 64.9 bits (158), Expect = 3e-12
Identities = 29/183 (15%), Positives = 57/183 (31%), Gaps = 43/183 (23%)
Query: 511 GQSAHFEARLTPVTDPDLVVEWFYNGKK------------LPHGHRYRTFHDFGIVILDI 558
GQ + + ++D ++W K Y+ F + + I +
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73
Query: 559 LYCYEENSGVYECRATNKYGSDVTKAS-----LKCVSK-------TNLIL-----ESQLP 601
++ +Y+ + G +V + + VSK N L P
Sbjct: 74 K---TDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDP 130
Query: 602 EVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 661
E+ + +GK L R ++ S ++C A NK + + + C
Sbjct: 131 ELNLYQDGKHLKLSQR--------VITHKWT---TSLSAKFKCTAGNKVSKESSVEPVSC 179
Query: 662 VSK 664
K
Sbjct: 180 PEK 182
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 3e-07
Identities = 23/219 (10%), Positives = 60/219 (27%), Gaps = 65/219 (29%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKK------------LPHGHRYRTFHDFG 625
G D+ L + + + +++W K Y+ F +
Sbjct: 14 GQDIN---LDI---PSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGT 67
Query: 626 IVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPD 685
+ I + ++ +Y+ + G +V + +L ++ ++ +
Sbjct: 68 LKIKHLK---TDDQDIYKVSIYDTKGKNVLEKIF------DLKIQERVSK---------- 108
Query: 686 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 745
P+ + + + + +GK ++ S R+ T
Sbjct: 109 ------PKISWT---------CINTTLTCEV--MNGTDPELNLYQDGKHLKLSQRVITHK 151
Query: 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784
+ + C A NK + + C
Sbjct: 152 W-----------TTSLSAKFKCTAGNKVSKESSVEPVSC 179
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 2e-06
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 14/95 (14%)
Query: 67 VFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTL 126
+ KP+ L +V N + ++ +GK L+L R +
Sbjct: 102 IQERVSKPKISW-TCINTTLTCEVM--NGTDPELNLYQDGKHLKLSQR-----------V 147
Query: 127 DLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTK 161
+ + C A N + + + C K
Sbjct: 148 ITHKWTTSLSAKFKCTAGNKVSKESSVEPVSCPEK 182
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 4e-06
Identities = 9/89 (10%), Positives = 28/89 (31%), Gaps = 15/89 (16%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNG------------KPIFHKNRVKMVSDFGFVVMDI 366
G + + ++D ++W + K+ K+ + + I
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG---TLKI 70
Query: 367 AYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
++++ D Y ++ G++
Sbjct: 71 KHLKTDDQDIYKVSIYDTKGKNVLEKIFD 99
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 7e-04
Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 15/87 (17%)
Query: 82 QPLHLEAQVEPKNDPNLKIEWIFNG------------KPLELGSRFKTTADFGFVTLDLT 129
Q ++L+ +D I+W + + +K + TL +
Sbjct: 15 QDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG---TLKIK 71
Query: 130 EVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ DQ IY ++ G+
Sbjct: 72 HLKTDDQDIYKVSIYDTKGKNVLEKIF 98
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 2e-15
Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 12/103 (11%)
Query: 300 KGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDF 359
K K + ++ + G SA C V + +V W+ +GK + ++V++ +
Sbjct: 8 KVVFAKEQPAHREVQ-AEAGASATLSCE---VAQAQTEVTWYKDGKKLSSSSKVRVEAVG 63
Query: 360 GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI----KCFG 398
+ + ++GEY C A G + +CFG
Sbjct: 64 CTRRLVVQQAGQAEAGEYSCEA----GGQQLSFRLQVAGQCFG 102
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 66.7 bits (163), Expect = 1e-13
Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 8/97 (8%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
K +V + G SA V V W+ +GKKL + R
Sbjct: 12 AKEQPAHREVQ-AEAGASATLSCE---VAQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRR 67
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKT 592
L + + +G Y C A G L+ +
Sbjct: 68 LVVQQAGQAEAGEYSCEA----GGQQLSFRLQVAGQC 100
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 4e-11
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 11/102 (10%)
Query: 58 GPEETFAKPVFIVPLKPEFK---LGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSR 114
G + K VF +P + L +V ++ W +GK L S+
Sbjct: 1 GSSGSSGKVVF-AKEQPAHREVQAEAGASATLSCEV---AQAQTEVTWYKDGKKLSSSSK 56
Query: 115 FKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ A L + + + G Y+C AG S +
Sbjct: 57 VRVEAVGCTRRLVVQQAGQAEAGEYSCE----AGGQQLSFRL 94
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 7e-11
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 5/92 (5%)
Query: 202 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
F E + G A V V + +GK + +S ++R
Sbjct: 8 KVVFAKEQPAHREVQAEAGASATLSCE---VAQAQTEVTWYKDGKKLSSSSKVRVEAVGC 64
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISV 291
L + + G Y+C A + + V
Sbjct: 65 TRRLVVQQAGQAEAGEYSCEAGGQQLSFRLQV 96
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 7e-11
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 5/92 (5%)
Query: 691 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
F E + G A V V + +GK + +S ++R
Sbjct: 8 KVVFAKEQPAHREVQAEAGASATLSCE---VAQAQTEVTWYKDGKKLSSSSKVRVEAVGC 64
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
L + + G Y+C A + + V
Sbjct: 65 TRRLVVQQAGQAEAGEYSCEAGGQQLSFRLQV 96
|
| >2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 2e-09
Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 10/83 (12%)
Query: 583 KASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVY 642
A+L C + EV W+ +GKKL + R L + + +G Y
Sbjct: 28 SATLSCE------VAQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEY 81
Query: 643 ECRATNKYGSDVTKASLKCVSKT 665
C A G L+ +
Sbjct: 82 SCEA----GGQQLSFRLQVAGQC 100
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 2e-15
Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P T ++++ G+S CT + +P ++ WF + + + + + + +
Sbjct: 10 APTITGNLENQT-TSIGESIEVSCTAS--GNPPPQIMWFKDNETLVEDSGIVLKDGNRNL 66
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
I V+ D G Y C+A + G A
Sbjct: 67 T--IRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 2e-13
Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTFHD 550
AP + + T G+S + +P + WF + + L
Sbjct: 7 ERVAPTITGNLENQT-TSIGESIEVSCT---ASGNPPPQIMWFKDNETLVEDSGIVLKD- 61
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
G L I +E+ G+Y C+A + G +A
Sbjct: 62 -GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 3e-12
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 5/94 (5%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
P L+ + + + + +P +I W + + L S
Sbjct: 9 VAPTITGNLENQ-TTSIGESIEVSCTAS--GNPPPQIMWFKDNETLVEDSGIVLKDGNR- 64
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
L + V D+G+YTC+A ++ G
Sbjct: 65 -NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 1e-10
Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 14/109 (12%)
Query: 202 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
P T +L N + GE + G+ + + + + + I G
Sbjct: 10 APTIT---GNLENQTTSIGESIEVSCTA--SGNPPPQIMWFKDNETLVEDSGIVLKD--G 62
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTS 308
L I + ED G+YTC+A + G A++ ++ + T+
Sbjct: 63 NRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI-IE----GAQEKTN 106
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-10
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 10/106 (9%)
Query: 691 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
P T +L N + GE + G+ + + + + + I G
Sbjct: 10 APTIT---GNLENQTTSIGESIEVSCTA--SGNPPPQIMWFKDNETLVEDSGIVLKD--G 62
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKL 794
L I + ED G+YTC+A + G A++ + + +T L
Sbjct: 63 NRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI-IEGAQEKTNL 107
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 4e-09
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
P++ WF + + L G L I +E+ G+Y C+A + G +A
Sbjct: 40 PQIMWFKDNETLVEDSGIVLKD--GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 77.1 bits (189), Expect = 3e-15
Identities = 35/267 (13%), Positives = 66/267 (24%), Gaps = 52/267 (19%)
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLE 184
T+ L+ + D+G+Y C S +L + EG + + +
Sbjct: 93 TIRLSRLELEDEGVYICEFATFPTGNRESQL-------NLTVMAKPTNWIEGTQAVLRAK 145
Query: 185 ESLRRQPAGVP-DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG 243
+ + S +G+PP +
Sbjct: 146 KGQDDKVLVATCTSANGKPP---------------------------SVVSWETRLKGEA 178
Query: 244 KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQP 303
+ E + TV ++ ++ C + + S+ L V
Sbjct: 179 EYQEIRNPNGTVTVIS--RYRLVPSREAHQQSLACIVNYHMDRFKESLTLN-VQ----YE 231
Query: 304 PKFTSHIKSLEGLKDGDSAHFECTLT--PVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
P+ T C P P + W + K V
Sbjct: 232 PEVTIEGFDGNWYLQRMDVKLTCKADANP---PATEYHWTTLNGSL-----PKGVEAQNR 283
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGED 388
+ + +G Y+C A N G
Sbjct: 284 TLFFKGPINYSLAGTYICEATNPIGTR 310
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 72.5 bits (177), Expect = 7e-14
Identities = 43/318 (13%), Positives = 88/318 (27%), Gaps = 49/318 (15%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE--LKVEWFHNGKPIF------------ 348
P + S+ G G C+ +V W +
Sbjct: 14 PSQVVQVNDSMYGFI-GTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGV 72
Query: 349 -----HKNRVKMVSD-FGFVVMDIAYVQSHDSGEYVCRAWN-KYGEDFTRATIKCFGKGG 401
++ RV+ + F + ++ ++ D G Y+C G ++ + K
Sbjct: 73 SVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPT 132
Query: 402 VYLDSLQPE-SLARIRELENAQGQQPVAQAAPVAE-----APKFITQISDVTQLKEGQSA 455
+++ Q + ++ + A P + K + ++ +
Sbjct: 133 NWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTV 192
Query: 456 HFEARLTPVTDPD---LVCELFSNFFPSQGQQPVAQAAP--VAEAPKFITQISDVTQLKE 510
RL P + L C + + ++ V P+ + D +
Sbjct: 193 ISRYRLVPSREAHQQSLACIV------NYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQ 246
Query: 511 GQSAHFE--ARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 568
A P P W LP G + F ++ +G
Sbjct: 247 RMDVKLTCKADANP---PATEYHWTTLNGSLPKGVEAQNRTLFFKGPIN-----YSLAGT 298
Query: 569 YECRATNKYGSDVTKASL 586
Y C ATN G+ + +
Sbjct: 299 YICEATNPIGTRSGQVEV 316
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 64.0 bits (155), Expect = 5e-11
Identities = 42/351 (11%), Positives = 75/351 (21%), Gaps = 92/351 (26%)
Query: 486 VAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLV--VEWFYNGKKL---- 539
+ + P + Q++D G + V W +
Sbjct: 4 MTGGQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNV 63
Query: 540 -------------PHGHRYR----TFHDFGIVILDILYCYEENSGVYECRA-TNKYGSDV 581
P+ R +F D I + + E+ GVY C T G+
Sbjct: 64 AIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLE---LEDEGVYICEFATFPTGNRE 120
Query: 582 TKASLKCVSKTNLILESQ--------------------------LPEVEWFYNGKKLPHG 615
++ +L ++K +E V W K
Sbjct: 121 SQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEY 180
Query: 616 HRYRTFHDFGIV--ILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL 673
R + V ++ E + C +L +
Sbjct: 181 QEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLN-------VQY--- 230
Query: 674 PELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYN 731
P+ T E + + A P +
Sbjct: 231 -----------------EPEVTIEGFDGNWYLQRMDVKLTCKADANP---PATEYHWTTL 270
Query: 732 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+ + + G Y C ATN G V +
Sbjct: 271 NGSLPKGVEAQNRT-----LFFKGPINYSLAGTYICEATNPIGTRSGQVEV 316
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 51.7 bits (123), Expect = 5e-07
Identities = 38/271 (14%), Positives = 66/271 (24%), Gaps = 39/271 (14%)
Query: 419 ENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPD---LVCELFS 475
+Q VA P + + + + RL+ + D +CE +
Sbjct: 55 STNGSKQNVAIYNP-SMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFAT 113
Query: 476 NFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT---DPDLVVEW 532
++ Q V P + + + T + P VV W
Sbjct: 114 FPTGNRESQLNLT---VMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSW 170
Query: 533 FYNGKKLPHGHRYRTFHDFGIV--ILDILYCYEENSGVYECRATNKYGSDVTKASLK--- 587
K R + V ++ E + C +L
Sbjct: 171 ETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY 230
Query: 588 ------CVSKTNLILESQL-------------PEVEWFYNGKKLPHGHRYRTFHDFGIVI 628
N L+ E W LP G + F
Sbjct: 231 EPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGP 290
Query: 629 LDILYCYEENSGVYECRATNKYGSDVTKASL 659
++ +G Y C ATN G+ + +
Sbjct: 291 IN-----YSLAGTYICEATNPIGTRSGQVEV 316
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 51.3 bits (122), Expect = 7e-07
Identities = 34/292 (11%), Positives = 56/292 (19%), Gaps = 81/292 (27%)
Query: 40 KVQEVEHALAGKYQ----RQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEP--- 92
++ +E G Y P+G E+ V KP + Q + + +
Sbjct: 95 RLSRLELEDEGVYICEFATFPTGNRESQLN--LTVMAKPTNWIEGTQAVLRAKKGQDDKV 152
Query: 93 --------KNDPNLKIEWIFNGKPLELGSRFKTTADFGFV--TLDLTEVYDRDQGIYTCR 142
P + W K + V L + Q C
Sbjct: 153 LVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACI 212
Query: 143 AWNLAGETFTSTTI---YCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSED 199
S T+ Y
Sbjct: 213 VNYHMDRFKESLTLNVQY------------------------------------------ 230
Query: 200 GRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA 257
P+ T E + + A P + + +
Sbjct: 231 --EPEVTIEGFDGNWYLQRMDVKLTCKADANP---PATEYHWTTLNGSLPKGVEAQNRT- 284
Query: 258 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSH 309
+ G Y C ATN G V + + H
Sbjct: 285 ----LFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITE-----AAALEHH 327
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 7e-05
Identities = 36/228 (15%), Positives = 69/228 (30%), Gaps = 51/228 (22%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKL-----------------PHGHRYR- 619
G+DV L C S N + ++ +V W + P+ R
Sbjct: 29 GTDVV---LHC-SFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEF 84
Query: 620 ---TFHDFGIVILDILYCYEENSGVYECRA-TNKYGSDVTKASLKCVSKTNLILESQLPE 675
+F D I + + E+ GVY C T G+ ++ +L ++K +E
Sbjct: 85 LRPSFTDGTIRLSRLE---LEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAV 141
Query: 676 LRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI 735
LR + +D + T + G+ P + +
Sbjct: 142 LRAKKG-----QDDKVLVATCT------SANGK---------PPSVVSWETRLKGEAEYQ 181
Query: 736 EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
E + TV ++ ++ C + + S+ L
Sbjct: 182 EIRNPNGTVTVIS--RYRLVPSREAHQQSLACIVNYHMDRFKESLTLN 227
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 3e-15
Identities = 20/103 (19%), Positives = 37/103 (35%), Gaps = 10/103 (9%)
Query: 299 SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFH--KNRVKMV 356
S T ++ G+ EC V++ + V+WF NG+ I K+R ++
Sbjct: 3 SGSSGIMVTKQLEDTT-AYCGERVELECE---VSEDDANVKWFKNGEEIIPGPKSRYRIR 58
Query: 357 SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGK 399
+ ++ I D+ EY + A + K
Sbjct: 59 VEGKKHILIIEGATKADAAEYSVMT----TGGQSSAKLSVDLK 97
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 2e-13
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG--HRYRTFHD 550
+ Q+ D T G+ E V++ D V+WF NG+++ G RYR +
Sbjct: 5 SSGIMVTKQLEDTT-AYCGERVELECE---VSEDDANVKWFKNGEEIIPGPKSRYRIRVE 60
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
IL I + ++ Y T + A L
Sbjct: 61 GKKHILIIEGATKADAAEYSVMTTG----GQSSAKL 92
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 3e-11
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 6/99 (6%)
Query: 197 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI--EASHRIRT 254
S T + + + GE E V + V++ NG+ I R R
Sbjct: 2 SSGSSGIMVTKQLEDTT-AYCGERVELECE---VSEDDANVKWFKNGEEIIPGPKSRYRI 57
Query: 255 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
+L I G D Y+ T A++SV+L
Sbjct: 58 RVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKLSVDL 96
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 3e-11
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 6/99 (6%)
Query: 686 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI--EASHRIRT 743
S T + + + GE E V + V++ NG+ I R R
Sbjct: 2 SSGSSGIMVTKQLEDTT-AYCGERVELECE---VSEDDANVKWFKNGEEIIPGPKSRYRI 57
Query: 744 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+L I G D Y+ T A++SV+L
Sbjct: 58 RVEGKKHILIIEGATKADAAEYSVMTTGGQSSAKLSVDL 96
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 2e-07
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 14/80 (17%)
Query: 583 KASLKC-VSKTNLILESQLPEVEWFYNGKKLPHG--HRYRTFHDFGIVILDILYCYEENS 639
+ L+C VS+ + V+WF NG+++ G RYR + IL I + ++
Sbjct: 24 RVELECEVSEDD-------ANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADA 76
Query: 640 GVYECRATNKYGSDVTKASL 659
Y T + A L
Sbjct: 77 AEYSVMTTG----GQSSAKL 92
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 4e-07
Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 6/84 (7%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG--SRFKTTADF 121
+ + L+ + + LE +V ++ + ++W NG+ + G SR++ +
Sbjct: 6 SGIMVTKQLEDT-TAYCGERVELECEV---SEDDANVKWFKNGEEIIPGPKSRYRIRVEG 61
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWN 145
L + D Y+
Sbjct: 62 KKHILIIEGATKADAAEYSVMTTG 85
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 7e-15
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 4/85 (4%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P ++ + G+ C L+ P V W + K I + +V +
Sbjct: 8 PAAIIKPLEDQW-VAPGEDVELRCELSRAGTP---VHWLKDRKAIRKSQKYDVVCEGTMA 63
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGE 387
++ I D+GEY C
Sbjct: 64 MLVIRGASLKDAGEYTCEVEASKST 88
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 7e-14
Identities = 12/91 (13%), Positives = 30/91 (32%), Gaps = 4/91 (4%)
Query: 489 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTF 548
++ + I + D + G+ ++ V W + K + +Y
Sbjct: 2 SSGSSGPAAIIKPLEDQW-VAPGEDVELRCE---LSRAGTPVHWLKDRKAIRKSQKYDVV 57
Query: 549 HDFGIVILDILYCYEENSGVYECRATNKYGS 579
+ + +L I +++G Y C +
Sbjct: 58 CEGTMAMLVIRGASLKDAGEYTCEVEASKST 88
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 6e-13
Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
P + ++ GE + V +L + K I S + V M
Sbjct: 8 PAAIIKPLEDQW-VAPGEDVELRCE---LSRAGTPVHWLKDRKAIRKSQKYDVVCEGTMA 63
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVN 292
+L I G ++D G YTC A + V
Sbjct: 64 MLVIRGASLKDAGEYTCEVEASKSTASLHVE 94
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 6e-13
Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
P + ++ GE + V +L + K I S + V M
Sbjct: 8 PAAIIKPLEDQW-VAPGEDVELRCE---LSRAGTPVHWLKDRKAIRKSQKYDVVCEGTMA 63
Query: 751 VLEILGTKIEDTGVYTCRATNKWGQAEISVN 781
+L I G ++D G YTC A + V
Sbjct: 64 MLVIRGASLKDAGEYTCEVEASKSTASLHVE 94
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-10
Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Query: 58 GPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT 117
G + I PL+ + + + + L ++ + + W+ + K + ++
Sbjct: 1 GSSGSSGPAAIIKPLEDQ-WVAPGEDVELRCEL---SRAGTPVHWLKDRKAIRKSQKYDV 56
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGE 149
+ L + +D G YTC
Sbjct: 57 VCEGTMAMLVIRGASLKDAGEYTCEVEASKST 88
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 7e-08
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 8/71 (11%)
Query: 583 KASLKC-VSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 641
L+C +S+ V W + K + +Y + + +L I +++G
Sbjct: 25 DVELRCELSRAG-------TPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGE 77
Query: 642 YECRATNKYGS 652
Y C +
Sbjct: 78 YTCEVEASKST 88
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 9e-15
Identities = 20/126 (15%), Positives = 43/126 (34%), Gaps = 21/126 (16%)
Query: 274 GVYTCRATNKWGQAEISVNLECVDKSKGQPPKFT--SHIKSLEGLKDGDSAHFECTLTPV 331
Y ++ + S PK + + EG + + C +
Sbjct: 1 ATYAAASSALVPR-----------GSHMYAPKLQGPVAVYTWEG----NQVNITCEVFA- 44
Query: 332 NDPELKVEWFHNGKPIFHKN--RVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDF 389
P + WF +G+ + N +K+ + +++ +D G Y C A N+ G++
Sbjct: 45 -YPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQES 103
Query: 390 TRATIK 395
+
Sbjct: 104 LEFILV 109
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 65.6 bits (160), Expect = 3e-12
Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 8/112 (7%)
Query: 479 PSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGK 537
+ + APK Q EG + V P + WF +G+
Sbjct: 3 YAAASSALVPRGSHMYAPKL--QGPVAVYTWEGNQVNITC---EVFAYPSATISWFRDGQ 57
Query: 538 KLPHG--HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
LP + ++ L++ E + G Y C A N+ G + + L
Sbjct: 58 LLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILV 109
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 1e-11
Identities = 23/112 (20%), Positives = 39/112 (34%), Gaps = 11/112 (9%)
Query: 683 VPDSEDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-- 738
VP P + Q + EG + + T+ + +G+ + +S
Sbjct: 11 VPRGSHMYAP----KLQGPVAVYTWEGNQVNITCE--VFAYPSATISWFRDGQLLPSSNY 64
Query: 739 HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPS 790
I+ + LE+ D G Y C A N+ GQ + L +PS
Sbjct: 65 SNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILV-QADTPS 115
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 3e-11
Identities = 22/109 (20%), Positives = 37/109 (33%), Gaps = 10/109 (9%)
Query: 194 VPDSEDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-- 249
VP P + Q + EG + + T+ + +G+ + +S
Sbjct: 11 VPRGSHMYAP----KLQGPVAVYTWEGNQVNITCE--VFAYPSATISWFRDGQLLPSSNY 64
Query: 250 HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
I+ + LE+ D G Y C A N+ GQ + L D
Sbjct: 65 SNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADT 113
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 6e-10
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 6/105 (5%)
Query: 54 RQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG- 112
P P+ G +++ +V P+ I W +G+ L
Sbjct: 8 SALVPRGSHMYAPKLQGPVAVYTWEGN--QVNITCEVFA--YPSATISWFRDGQLLPSSN 63
Query: 113 -SRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
S K L++T + D G Y C A N G+ +
Sbjct: 64 YSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFIL 108
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 3e-09
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 601 PEVEWFYNGKKLPHG--HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 658
+ WF +G+ LP + ++ L++ E + G Y C A N+ G + +
Sbjct: 48 ATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFI 107
Query: 659 LK 660
L
Sbjct: 108 LV 109
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 1e-14
Identities = 23/118 (19%), Positives = 41/118 (34%), Gaps = 9/118 (7%)
Query: 280 ATNKWGQAEISVNLECVDKSKGQPPKFT--SHIKSLEGLKDGDSAHFECTLTPVNDPELK 337
++ G V + + +PPK H++ K G+ + P +
Sbjct: 2 SSGSSGTLAQPVTI----REIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQG--KPRPQ 55
Query: 338 VEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
V W G P+ +RV + + V + DSGEY + +D I+
Sbjct: 56 VVWTKGGAPL-DTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 4e-12
Identities = 22/112 (19%), Positives = 33/112 (29%), Gaps = 8/112 (7%)
Query: 479 PSQGQQPVAQAAPVAEAPKFIT--QISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYN 535
QPV +AE PK + K G+ + P P V W
Sbjct: 6 SGTLAQPV-TIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVV---PFQGKPRPQVVWTKG 61
Query: 536 GKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
G L + DF + + +SG YE + D ++
Sbjct: 62 GAPLDTSRVHVRTSDFD-TVFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 2e-11
Identities = 19/105 (18%), Positives = 34/105 (32%), Gaps = 9/105 (8%)
Query: 198 EDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIPV-GDQTMTVEFLYNGKPIEASH-RIR 253
E PP+ GE + +P G V + G P++ S +R
Sbjct: 17 EIAEPPKIRLPRHLRQTYIRKVGEQLNLV---VPFQGKPRPQVVWTKGGAPLDTSRVHVR 73
Query: 254 TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
T V + D+G Y + + ++ + V+K
Sbjct: 74 TSD--FDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEK 116
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 1e-10
Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 9/106 (8%)
Query: 55 QPSGPEETFAKPVFIVPLKPE----FKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLE 110
QP E P +P K+GE L+L + K P ++ W G PL+
Sbjct: 11 QPVTIREIAEPPKIRLPRHLRQTYIRKVGE--QLNLVVPFQGK--PRPQVVWTKGGAPLD 66
Query: 111 LGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
SR + + D G Y + + I
Sbjct: 67 -TSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRI 111
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 1e-10
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 9/100 (9%)
Query: 687 EDGRPPQFTSEFQHLSNLS--EGEIAHFEASLIPV-GDQTMTVEFLYNGKPIEASH-RIR 742
E PP+ GE + +P G V + G P++ S +R
Sbjct: 17 EIAEPPKIRLPRHLRQTYIRKVGEQLNLV---VPFQGKPRPQVVWTKGGAPLDTSRVHVR 73
Query: 743 TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
T V + D+G Y + + ++ +
Sbjct: 74 TSD--FDTVFFVRQAARSDSGEYELSVQIENMKDTATIRI 111
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 5e-08
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
P+V W G L + DF + + +SG YE + D ++
Sbjct: 54 PQVVWTKGGAPLDTSRVHVRTSDFD-TVFFVRQAARSDSGEYELSVQIENMKDTATIRIR 112
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 3e-14
Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 8/99 (8%)
Query: 302 QPPKFTSHIK---SLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKMVS 357
+ P +T+ K L + ++ F C P +P + W NGK ++R+
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRC---PAGGNPMPTMRWLKNGKEFKQEHRIGGYK 59
Query: 358 DFGFV-VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + V D G Y C N+YG +
Sbjct: 60 VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 5e-12
Identities = 21/100 (21%), Positives = 31/100 (31%), Gaps = 8/100 (8%)
Query: 493 AEAPKFITQISDVTQLK---EGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTF 548
AP + +L + F P +P + W NGK+ HR +
Sbjct: 2 KRAPYWTNTEKMEKRLHAVPAANTVKFRC---PAGGNPMPTMRWLKNGKEFKQEHRIGGY 58
Query: 549 HDF-GIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L + + G Y C N+YGS L
Sbjct: 59 KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 1e-11
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 10/102 (9%)
Query: 199 DGRPPQFTSEFQ---HLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIR 253
+ R P +T+ + L + F A G+ T+ +L NGK + HRI
Sbjct: 1 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG----GNPMPTMRWLKNGKEFKQEHRIG 56
Query: 254 TVHAF-GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
L + D G YTC N++G + +L+
Sbjct: 57 GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 1e-11
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 10/102 (9%)
Query: 688 DGRPPQFTSEFQ---HLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIR 742
+ R P +T+ + L + F A G+ T+ +L NGK + HRI
Sbjct: 1 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG----GNPMPTMRWLKNGKEFKQEHRIG 56
Query: 743 TVHAF-GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
L + D G YTC N++G + +L+
Sbjct: 57 GYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 98
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 3e-10
Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 6/96 (6%)
Query: 64 AKPVFIVPLKPEFKL---GEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTAD 120
P + K E +L A + +P + W+ NGK + R
Sbjct: 3 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIGGYKV 60
Query: 121 FGFV-TLDLTEVYDRDQGIYTCRAWNLAGETFTSTT 155
+L + V D+G YTC N G +
Sbjct: 61 RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 96
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 1e-09
Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDF-GIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
P + W NGK+ HR + L + + G Y C N+YGS L
Sbjct: 38 PTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 97
Query: 660 K 660
Sbjct: 98 D 98
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 4e-14
Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 28/155 (18%)
Query: 233 QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 292
++ ++++ +NG I + D+G YTC+ + +
Sbjct: 33 ESDSIQWFHNGNLIPTHTQP----------SYRFKANNNDSGEYTCQTGQTSLSDPVHLT 82
Query: 293 LECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNR 352
+ LE ++G++ C + + P +KV +F NGK +
Sbjct: 83 V--------LFEWLVLQTPHLE-FQEGETIMLRCH-SWKDKPLVKVTFFQNGKSQKFSHL 132
Query: 353 VKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGE 387
S I SG+Y C Y
Sbjct: 133 DPTFS--------IPQANHSHSGDYHCTGNIGYTL 159
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 3e-13
Identities = 33/181 (18%), Positives = 50/181 (27%), Gaps = 46/181 (25%)
Query: 495 APKF-ITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGI 553
PK + + + S + + D ++WF+NG +P +
Sbjct: 2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESD-SIQWFHNGNLIPTHTQP-------- 52
Query: 554 VILDILYCYEENSGVYECRATNKYGSDVTK----------------------ASLKCVSK 591
+SG Y C+ SD L+C S
Sbjct: 53 --SYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSW 110
Query: 592 TNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG 651
+ L +V +F NGK H TF I +SG Y C Y
Sbjct: 111 KD----KPLVKVTFFQNGKSQKFSHLDPTFS-----IPQAN---HSHSGDYHCTGNIGYT 158
Query: 652 S 652
Sbjct: 159 L 159
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 9e-09
Identities = 32/198 (16%), Positives = 50/198 (25%), Gaps = 57/198 (28%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 637
VT L C + + ++WF+NG +P +
Sbjct: 19 EDSVT---LTCQGARS----PESDSIQWFHNGNLIPTHTQP----------SYRFKANNN 61
Query: 638 NSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSE 697
+SG Y C+ SD +L + + + + P
Sbjct: 62 DSGEYTCQTGQTSLSD----------PVHLTVLFE-WLVLQTPHLE-------------- 96
Query: 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGT 757
EGE + V F NGK + SH T I
Sbjct: 97 ------FQEGETIMLRCH-SWKDKPLVKVTFFQNGKSQKFSHLDPT--------FSIPQA 141
Query: 758 KIEDTGVYTCRATNKWGQ 775
+G Y C +
Sbjct: 142 NHSHSGDYHCTGNIGYTL 159
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 4e-06
Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 12/87 (13%)
Query: 303 PPKFTSHIKSLEG-LKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
PPK ++ + DS C + + ++WFHNG I +
Sbjct: 2 PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESD-SIQWFHNGNLIPTHTQP-------- 52
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGED 388
++DSGEY C+ D
Sbjct: 53 --SYRFKANNNDSGEYTCQTGQTSLSD 77
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 1e-05
Identities = 37/224 (16%), Positives = 60/224 (26%), Gaps = 66/224 (29%)
Query: 64 AKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
A P ++ L+P + + + L Q + + I+W NG + ++
Sbjct: 1 APPKAVLKLEPPWINVLQEDSVTLTCQGARSPESD-SIQWFHNGNLIPTHTQ-------- 51
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQD 182
+ + D G YTC+ T S ++ +
Sbjct: 52 --PSYRFKANNNDSGEYTCQTGQ----TSLSDPVH----------------------LTV 83
Query: 183 LEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 242
L E L Q +F EGE + V F N
Sbjct: 84 LFEWLVLQT---------PHLEFQ----------EGETIMLRCH-SWKDKPLVKVTFFQN 123
Query: 243 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 286
GK + SH T I +G Y C +
Sbjct: 124 GKSQKFSHLDPT--------FSIPQANHSHSGDYHCTGNIGYTL 159
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 5e-05
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 12/92 (13%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV 124
+ + + EF+ GE + L K+ P +K+ + NGK + T
Sbjct: 86 EWLVLQTPHLEFQEGE--TIMLRCHS-WKDKPLVKVTFFQNGKSQKFSHLDPT------- 135
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ + G Y C F+S +
Sbjct: 136 -FSIPQANHSHSGDYHCTGNIGYT-LFSSKPV 165
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 4e-14
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 12/96 (12%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI----FHKNRVKMVSD 358
P + ++ + + GD V++ +V W NG + K R + D
Sbjct: 8 PVLIVTPLEDQQ-VFVGDRVEMAVE---VSEEGAQVMWMKNGVELTREDSFKARYRFKKD 63
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
++ + V D G Y A +
Sbjct: 64 GKRHILIFSDVVQEDRGRYQVIT----NGGQCEAEL 95
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 9e-13
Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 12/102 (11%)
Query: 489 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLP----HGHR 544
++ + +T + D + G V++ V W NG +L R
Sbjct: 2 SSGSSGPVLIVTPLEDQQ-VFVGDRVEMAVE---VSEEGAQVMWMKNGVELTREDSFKAR 57
Query: 545 YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
YR D IL +E+ G Y+ +A L
Sbjct: 58 YRFKKDGKRHILIFSDVVQEDRGRYQVITNG----GQCEAEL 95
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 4e-11
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 8/99 (8%)
Query: 197 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS----HRI 252
S P + + + G+ V ++ V ++ NG + R
Sbjct: 3 SGSSGPVLIVTPLEDQQ-VFVGDRVEMAVE---VSEEGAQVMWMKNGVELTREDSFKARY 58
Query: 253 RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 291
R +L ED G Y +AE+ V
Sbjct: 59 RFKKDGKRHILIFSDVVQEDRGRYQVITNGGQCEAELIV 97
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 4e-11
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 8/99 (8%)
Query: 686 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS----HRI 741
S P + + + G+ V ++ V ++ NG + R
Sbjct: 3 SGSSGPVLIVTPLEDQQ-VFVGDRVEMAVE---VSEEGAQVMWMKNGVELTREDSFKARY 58
Query: 742 RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
R +L ED G Y +AE+ V
Sbjct: 59 RFKKDGKRHILIFSDVVQEDRGRYQVITNGGQCEAELIV 97
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 3e-08
Identities = 15/92 (16%), Positives = 34/92 (36%), Gaps = 8/92 (8%)
Query: 58 GPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLE----LGS 113
G + + + PL+ + + + +V ++ ++ W+ NG L +
Sbjct: 1 GSSGSSGPVLIVTPLEDQQVF-VGDRVEMAVEV---SEEGAQVMWMKNGVELTREDSFKA 56
Query: 114 RFKTTADFGFVTLDLTEVYDRDQGIYTCRAWN 145
R++ D L ++V D+G Y
Sbjct: 57 RYRFKKDGKRHILIFSDVVQEDRGRYQVITNG 88
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 4e-06
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 601 PEVEWFYNGKKLP----HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 656
+V W NG +L RYR D IL +E+ G Y+ +
Sbjct: 37 AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVITNG----GQCE 92
Query: 657 ASL 659
A L
Sbjct: 93 AEL 95
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 7e-14
Identities = 26/157 (16%), Positives = 51/157 (32%), Gaps = 32/157 (20%)
Query: 233 QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 292
+ + ++ +NG E ++ L I+ K ED+G Y C+ + +
Sbjct: 33 EVSSTKWFHNGSLSEETNS----------SLNIVNAKFEDSGEYKCQHQQVNESEPVYLE 82
Query: 293 LECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI--FHK 350
+ D Q + +G C N KV ++ +G+ + +++
Sbjct: 83 VF-SDWLLLQASAEV--------VMEGQPLFLRC-HGWRNWDVYKVIYYKDGEALKYWYE 132
Query: 351 NRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGE 387
N + I DSG Y C +
Sbjct: 133 NHN----------ISITNATVEDSGTYYCTGKVWQLD 159
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 66.5 bits (162), Expect = 8e-13
Identities = 27/183 (14%), Positives = 53/183 (28%), Gaps = 46/183 (25%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF 551
V + PK ++ +G++ + +WF+NG +
Sbjct: 1 VPQKPKVSLNPPW-NRIFKGENVTLTCNGNNFFEVS-STKWFHNGSLSEETNS------- 51
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTK----------------------ASLKCV 589
L+I+ E+SG Y+C+ S+ L+C
Sbjct: 52 ---SLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCH 108
Query: 590 SKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNK 649
N + +V ++ +G+ L + + E+SG Y C
Sbjct: 109 GWRN----WDVYKVIYYKDGEALKYWYENHNISITNAT--------VEDSGTYYCTGKVW 156
Query: 650 YGS 652
Sbjct: 157 QLD 159
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 6e-09
Identities = 32/209 (15%), Positives = 57/209 (27%), Gaps = 62/209 (29%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 637
G +VT L C ++ +WF+NG + L+I+ E
Sbjct: 19 GENVT---LTCNGNNF----FEVSSTKWFHNGSLSEETNS----------SLNIVNAKFE 61
Query: 638 NSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSE 697
+SG Y+C+ S+ + L + A V
Sbjct: 62 DSGEYKCQHQQVNESEPVY-----------LEVFSDWLLLQASAEVVM------------ 98
Query: 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGT 757
EG+ V + +G+ ++ + + I
Sbjct: 99 --------EGQPLFLR-CHGWRNWDVYKVIYYKDGEALKYWYENHN--------ISITNA 141
Query: 758 KIEDTGVYTCRATNKWGQ-----AEISVN 781
+ED+G Y C I+V
Sbjct: 142 TVEDSGTYYCTGKVWQLDYESEPLNITVI 170
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 2e-05
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 11/70 (15%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
G++ C + +WFHNG N ++I + DSGEY
Sbjct: 19 GENVTLTCNGNNFFEVS-STKWFHNGSLSEETNSS----------LNIVNAKFEDSGEYK 67
Query: 379 CRAWNKYGED 388
C+ +
Sbjct: 68 CQHQQVNESE 77
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 2e-04
Identities = 31/234 (13%), Positives = 57/234 (24%), Gaps = 73/234 (31%)
Query: 65 KPVFIV-PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
KP + P GE + L +W NG E +
Sbjct: 4 KPKVSLNPPWNRIFKGE--NVTLTCNG-NNFFEVSSTKWFHNGSLSEETNS--------- 51
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDL 183
+L++ D G Y C+ + S +Y ++
Sbjct: 52 -SLNIVNAKFEDSGEYKCQHQQVNE----SEPVY----------------------LEVF 84
Query: 184 EESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG 243
+ L Q + + EG+ V + +G
Sbjct: 85 SDWLLLQASAEV-------------------VMEGQPLFLR-CHGWRNWDVYKVIYYKDG 124
Query: 244 KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ-----AEISVN 292
+ ++ + + I +ED+G Y C I+V
Sbjct: 125 EALKYWYENHN--------ISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI 170
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 74.1 bits (182), Expect = 8e-14
Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 3/102 (2%)
Query: 294 ECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRV 353
+ P+F E + +G SA+F C + + P V W + + + +
Sbjct: 473 DAFWDRSEAQPRFIVKPYGTE-VGEGQSANFYCRVIASSPPV--VTWHKDDRELKQSVKY 529
Query: 354 KMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + I V+ D GEY RA N YG +
Sbjct: 530 MKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 6e-13
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 3/109 (2%)
Query: 479 PSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKK 538
P + A P+FI + T++ EGQSA+F R+ + P V W + ++
Sbjct: 466 PQEYSIRDAFWDRSEAQPRFIVKPYG-TEVGEGQSANFYCRVIASSPPV--VTWHKDDRE 522
Query: 539 LPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L +Y ++ L I ++ G Y RA N YG+ L
Sbjct: 523 LKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 61.4 bits (149), Expect = 7e-10
Identities = 15/60 (25%), Positives = 24/60 (40%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
P V W + ++L +Y ++ L I ++ G Y RA N YG+ L
Sbjct: 512 PVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 571
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 5e-09
Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 3/119 (2%)
Query: 38 LEKVQEVEHALAGKYQRQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPN 97
+ + +Y + + + + A+P FIV ++GE Q + +V + P
Sbjct: 455 ISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPY-GTEVGEGQSANFYCRVIASSPP- 512
Query: 98 LKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ W + + L+ ++ + L + V D+G YT RA N G +
Sbjct: 513 -VVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 570
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 195 PDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT 254
P+F + + EG+ A+F +I V + + + ++ S +
Sbjct: 475 FWDRSEAQPRFIVKPYGTE-VGEGQSANFYCRVI--ASSPPVVTWHKDDRELKQSVKYMK 531
Query: 255 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
+ L I K +D G YT RA N +G E V L
Sbjct: 532 RYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 570
|
| >3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 684 PDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT 743
P+F + + EG+ A+F +I V + + + ++ S +
Sbjct: 475 FWDRSEAQPRFIVKPYGTE-VGEGQSANFYCRVI--ASSPPVVTWHKDDRELKQSVKYMK 531
Query: 744 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+ L I K +D G YT RA N +G E V L
Sbjct: 532 RYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 570
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 72.2 bits (176), Expect = 9e-14
Identities = 33/349 (9%), Positives = 82/349 (23%), Gaps = 81/349 (23%)
Query: 66 PVFIV-PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV 124
+ K F G+ L + NL W + +P E +
Sbjct: 3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTA---------- 52
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLE 184
TL + + + G Y + T + ++ + LI P+
Sbjct: 53 TLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSS------ 106
Query: 185 ESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGK 244
+ + + + P + + +
Sbjct: 107 ---------------QTDVELHATVKFSGGKT------------PADNYELHYSWSKGED 139
Query: 245 PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPP 304
I+ + + I + GVYT + + + S + + +
Sbjct: 140 VIDTTQD-----------ITIQEFTADKNGVYTVKVWGESEDSAASASTKIM-----LAT 183
Query: 305 KFTSHIKSLEG-LKDGDSAHFECTL--------TPVNDPELKVEWFHN----------GK 345
+ G+ + + + + +K W+ G
Sbjct: 184 MNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGS 243
Query: 346 PIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ ++ G + D+ ++ C A + +
Sbjct: 244 EVGEALEGFSITPDGHLF--KESATYDDTAKFWCVAKLYQQIEDETVEV 290
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 69.9 bits (170), Expect = 4e-13
Identities = 20/201 (9%), Positives = 52/201 (25%), Gaps = 33/201 (16%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASL--IPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
+ + G+ A++ +T + + +P E +
Sbjct: 2 AFTVSIQSNK-RCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTAT------- 53
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDG 319
L + E+ G Y + + + ++ + + + + +
Sbjct: 54 ---LTVADATSENAGSYKVTVQDTDTMTSVESEVFLME--EAELIVNITEPQHFY-VSSQ 107
Query: 320 DSAHFECTLT------PVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHD 373
T+ P ++ EL W I + I +
Sbjct: 108 TDVELHATVKFSGGKTPADNYELHYSWSKGEDVI-----------DTTQDITIQEFTADK 156
Query: 374 SGEYVCRAWNKYGEDFTRATI 394
+G Y + W + + A+
Sbjct: 157 NGVYTVKVWGESEDSAASAST 177
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 2e-11
Identities = 37/320 (11%), Positives = 83/320 (25%), Gaps = 63/320 (19%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLT--PVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
A Q + G A + +L W + + +
Sbjct: 2 AFTVSIQSNKRC-FLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTA-------- 52
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKL 612
L + EN+G Y+ + ++ + + + LI+ P+ + + +
Sbjct: 53 --TLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDV 110
Query: 613 ----------------PHGHRYRTFHDFGIV----ILDILYCYEENSGVYECRATNKYGS 652
+ Y ++ + I + +GVY + +
Sbjct: 111 ELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQDITIQEFTADKNGVYTVKVWGESED 170
Query: 653 DVTKASLKCVSKTNLILESQLPE----------LRRQPAGVPDSEDGRPPQFTSEFQHLS 702
AS K + T + + + L + + P T ++
Sbjct: 171 SAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYL 230
Query: 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDT 762
EG+++ VG+ +G L +DT
Sbjct: 231 Q-REGQLSPTLIG-SEVGEALEGFSITPDGH------------------LFKESATYDDT 270
Query: 763 GVYTCRATNKWGQAEISVNL 782
+ C A + +V +
Sbjct: 271 AKFWCVAKLYQQIEDETVEV 290
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 7e-07
Identities = 18/163 (11%), Positives = 43/163 (26%), Gaps = 44/163 (26%)
Query: 636 EENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFT 695
EN+G Y+ + ++ L+ E++L +P
Sbjct: 61 SENAGSYKVTVQDTDTMTSVESE------VFLMEEAELIVNITEPQHF------------ 102
Query: 696 SEFQHLSNLSEGEIAHFEASLI------PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGM 749
+S A++ P + + + I+ +
Sbjct: 103 -------YVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQD--------- 146
Query: 750 VVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQT 792
+ I + GVYT + + + S + + +
Sbjct: 147 --ITIQEFTADKNGVYTVKVWGESEDSAASAST--KIMLATMN 185
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 69.4 bits (169), Expect = 2e-13
Identities = 24/162 (14%), Positives = 40/162 (24%), Gaps = 13/162 (8%)
Query: 242 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKG 301
+ + +RI G I I G+ C A + + + V +
Sbjct: 48 EKRFVPDGNRISWDSKKGFT---IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYR- 103
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
L G+ CT + + W + HK V
Sbjct: 104 -IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS 162
Query: 362 V--------VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ I V D G Y C A + ++
Sbjct: 163 GSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 204
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 61.3 bits (148), Expect = 8e-11
Identities = 26/207 (12%), Positives = 54/207 (26%), Gaps = 44/207 (21%)
Query: 491 PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEW---FYNGKKLPHGHRYRT 547
P + + +T+ + ++ + +L V + + +P G+R
Sbjct: 5 PFIASVSDQHGVVYITE-NKNKTVVIPCL---GSISNLNVSLCARYPEKRFVPDGNRISW 60
Query: 548 FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKT--------------- 592
G I + +G+ C A S + + V
Sbjct: 61 DSKKGFTIPSYMI---SYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIEL 117
Query: 593 ----NLILE-------SQLPEVEWFYNGKKLPHGHRYRTFHDFGIV--------ILDILY 633
L+L + + W Y K H L I
Sbjct: 118 SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDG 177
Query: 634 CYEENSGVYECRATNKYGSDVTKASLK 660
+ G+Y C A++ + ++
Sbjct: 178 VTRSDQGLYTCAASSGLMTKKNSTFVR 204
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 56.3 bits (135), Expect = 4e-09
Identities = 31/251 (12%), Positives = 60/251 (23%), Gaps = 55/251 (21%)
Query: 59 PEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF---NGKPLELGSRF 115
F V + + + + + NL + + + G+R
Sbjct: 2 YRSPFIASVSDQHGVVYITENKNKTVVIPCLG---SISNLNVSLCARYPEKRFVPDGNRI 58
Query: 116 KTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEE 175
+ GF + G+ C A E++ S ++ +
Sbjct: 59 SWDSKKGFT---IPSYMISYAGMVFCEAKI-NDESYQSIMY-------IVVVVGYR---- 103
Query: 176 GLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQ 233
H LS GE A
Sbjct: 104 --------------------------IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGI 137
Query: 234 TMTVEF----LYNGKPIEASHRIRTVHAFGMV--VLEILGTKIEDTGVYTCRATNKWGQA 287
E+ + K + + ++ L I G D G+YTC A++
Sbjct: 138 DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK 197
Query: 288 EISVNLECVDK 298
+ S + +
Sbjct: 198 KNSTFVRVHED 208
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 3e-08
Identities = 29/186 (15%), Positives = 49/186 (26%), Gaps = 35/186 (18%)
Query: 605 WFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSK 664
+ + +P G+R G I + +G+ C A S + + V
Sbjct: 45 RYPEKRFVPDGNRISWDSKKGFTIPSYMI---SYAGMVFCEAKINDESYQSIMYIVVVVG 101
Query: 665 TNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQ 722
R H LS GE A
Sbjct: 102 Y------------------------RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGI 137
Query: 723 TMTVEF----LYNGKPIEASHRIRTVHAFGMV--VLEILGTKIEDTGVYTCRATNKWGQA 776
E+ + K + + ++ L I G D G+YTC A++
Sbjct: 138 DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK 197
Query: 777 EISVNL 782
+ S +
Sbjct: 198 KNSTFV 203
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 6e-05
Identities = 16/109 (14%), Positives = 26/109 (23%), Gaps = 9/109 (8%)
Query: 317 KDGDSAHFECTLTPVNDPELKVEWFHN-GKPIFHKNRVKMVSD--FGFVVMDIAYVQSHD 373
+ C + L V + F + ++ D GF I
Sbjct: 22 NKNKTVVIPCLGS---ISNLNVSLCARYPEKRFVPDGNRISWDSKKGFT---IPSYMISY 75
Query: 374 SGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQ 422
+G C A + I +Y L P + E
Sbjct: 76 AGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLV 124
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 2e-13
Identities = 14/101 (13%), Positives = 30/101 (29%), Gaps = 15/101 (14%)
Query: 299 SKGQPPKFTSHIKSLEGLKD-----GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRV 353
S P I S + + C ++ + W+ +G+ + +
Sbjct: 3 SGSSGPVH---ILSPQDKVSLTFTTSERVVLTCE---LSRVDFPATWYKDGQKVEESELL 56
Query: 354 KMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ D + + + DSGE+ CR +
Sbjct: 57 VVKMDGRKHRLILPEAKVQDSGEFECRT----EGVSAFFGV 93
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 9e-13
Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 11/97 (11%)
Query: 493 AEAPKFIT---QISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFH 549
+ P I +T + ++ D W+ +G+K+
Sbjct: 5 SSGPVHILSPQDKVSLT-FTTSERVVLTCE---LSRVDFPATWYKDGQKVEESELLVVKM 60
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
D L + ++SG +ECR +
Sbjct: 61 DGRKHRLILPEAKVQDSGEFECRT----EGVSAFFGV 93
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 2e-11
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 5/93 (5%)
Query: 202 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
P Q +L+ E + + +G+ +E S +
Sbjct: 7 GPVHILSPQDKVSLTFTTSERVVLTCE---LSRVDFPATWYKDGQKVEESELLVVKMDGR 63
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 292
L + K++D+G + CR ++V
Sbjct: 64 KHRLILPEAKVQDSGEFECRTEGVSAFFGVTVQ 96
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 2e-11
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 5/93 (5%)
Query: 691 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
P Q +L+ E + + +G+ +E S +
Sbjct: 7 GPVHILSPQDKVSLTFTTSERVVLTCE---LSRVDFPATWYKDGQKVEESELLVVKMDGR 63
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781
L + K++D+G + CR ++V
Sbjct: 64 KHRLILPEAKVQDSGEFECRTEGVSAFFGVTVQ 96
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 2e-09
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 5/84 (5%)
Query: 64 AKPVFIVPLKPEF--KLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
+ PV I+ + + ++ + L ++ + + W +G+ +E D
Sbjct: 6 SGPVHILSPQDKVSLTFTTSERVVLTCEL---SRVDFPATWYKDGQKVEESELLVVKMDG 62
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWN 145
L L E +D G + CR
Sbjct: 63 RKHRLILPEAKVQDSGEFECRTEG 86
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 4e-08
Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 15/83 (18%)
Query: 578 GSDVTKASLKC-VSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYE 636
V L C +S+ + W+ +G+K+ D L +
Sbjct: 25 SERVV---LTCELSRVD-------FPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKV 74
Query: 637 ENSGVYECRATNKYGSDVTKASL 659
++SG +ECR +
Sbjct: 75 QDSGEFECRT----EGVSAFFGV 93
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 66.3 bits (162), Expect = 2e-13
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 9/98 (9%)
Query: 299 SKGQPPKFTSHIKSLEGLK--DGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV 356
S + + + + C L P +V W +G+ + + +
Sbjct: 6 SGTDVSSWIVYPSGKVYVAAVRLERVVLTCELC---RPWAEVRWTKDGEEVVESPALLLQ 62
Query: 357 SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ + + VQ DSGEY+C ++ T+
Sbjct: 63 KEDTVRRLVLPAVQLEDSGEYLCEI----DDESASFTV 96
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 1e-12
Identities = 14/113 (12%), Positives = 32/113 (28%), Gaps = 9/113 (7%)
Query: 489 AAPVAEAPKFITQISDVTQLK--EGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR 546
+ + +I S + + + P V W +G+++
Sbjct: 4 GSSGTDVSSWIVYPSGKVYVAAVRLERVVLTCE---LCRPWAEVRWTKDGEEVVESPALL 60
Query: 547 TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQ 599
+ + L + E+SG Y C + ++ I+ S
Sbjct: 61 LQKEDTVRRLVLPAVQLEDSGEYLCEI----DDESASFTVTVTEPPVRIIYSG 109
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 1e-11
Identities = 12/108 (11%), Positives = 31/108 (28%), Gaps = 13/108 (12%)
Query: 202 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
+ ++ E + V + +G+ + S +
Sbjct: 10 VSSWIVYPSGKVYVAAVRLERVVLTCE---LCRPWAEVRWTKDGEEVVESPALLLQKEDT 66
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFT 307
+ L + ++ED+G Y C ++ ++V P +
Sbjct: 67 VRRLVLPAVQLEDSGEYLCEIDDESASFTVTV--------TEPPVRII 106
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 2e-11
Identities = 11/92 (11%), Positives = 29/92 (31%), Gaps = 5/92 (5%)
Query: 691 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
+ ++ E + V + +G+ + S +
Sbjct: 10 VSSWIVYPSGKVYVAAVRLERVVLTCE---LCRPWAEVRWTKDGEEVVESPALLLQKEDT 66
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
+ L + ++ED+G Y C ++ ++V
Sbjct: 67 VRRLVLPAVQLEDSGEYLCEIDDESASFTVTV 98
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 3e-09
Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 9/95 (9%)
Query: 64 AKPVFIVPLKPEFKL--GEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF 121
+IV + + + + L ++ P ++ W +G+ + +
Sbjct: 9 DVSSWIVYPSGKVYVAAVRLERVVLTCEL---CRPWAEVRWTKDGEEVVESPALLLQKED 65
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L L V D G Y C + S T+
Sbjct: 66 TVRRLVLPAVQLEDSGEYLCE----IDDESASFTV 96
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 9e-08
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 10/90 (11%)
Query: 583 KASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVY 642
+ L C L EV W +G+++ + + L + E+SG Y
Sbjct: 30 RVVLTCE------LCRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEY 83
Query: 643 ECRATNKYGSDVTKASLKCVSKTNLILESQ 672
C + ++ I+ S
Sbjct: 84 LCEI----DDESASFTVTVTEPPVRIIYSG 109
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 4e-13
Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 11/98 (11%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKM-----VS 357
P I LE T+ +P+ ++WF+NG + +
Sbjct: 4 APT----ITFLESPTSDHHWCIPFTVKG--NPKPALQWFYNGAILNESKYICTKIHVTNH 57
Query: 358 DFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + ++G+Y A N+YG+D + +
Sbjct: 58 TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH 95
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 8e-11
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 236 TVEFLYNGKPIEASHRIRT-----VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 290
+++ YNG + S I T H L++ + G YT A N++G+ E
Sbjct: 32 ALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ 91
Query: 291 VNLECVDK 298
++ +
Sbjct: 92 ISAHFMGW 99
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 1e-10
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 601 PEVEWFYNGKKLPHGHRYRTF-----HDFGIVILDILYCYEENSGVYECRATNKYGSDVT 655
P ++WFYNG L T H L + N+G Y A N+YG D
Sbjct: 31 PALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEK 90
Query: 656 KASLK 660
+ S
Sbjct: 91 QISAH 95
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 2e-10
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Query: 725 TVEFLYNGKPIEASHRIRT-----VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 779
+++ YNG + S I T H L++ + G YT A N++G+ E
Sbjct: 32 ALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQ 91
Query: 780 VNLE 783
++
Sbjct: 92 ISAH 95
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 3e-10
Identities = 26/102 (25%), Positives = 34/102 (33%), Gaps = 13/102 (12%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTF-- 548
V AP IT + T V +P ++WFYNG L T
Sbjct: 1 VHFAPT-ITFLESPT---SDHHWCIPFT---VKGNPKPALQWFYNGAILNESKYICTKIH 53
Query: 549 ---HDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
H L + N+G Y A N+YG D + S
Sbjct: 54 VTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAH 95
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 8e-09
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 5/67 (7%)
Query: 95 DPNLKIEWIFNGKPLELGSRFKTTADFG-----FVTLDLTEVYDRDQGIYTCRAWNLAGE 149
+P ++W +NG L T L L + G YT A N G+
Sbjct: 28 NPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGK 87
Query: 150 TFTSTTI 156
+
Sbjct: 88 DEKQISA 94
|
| >3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202 | Back alignment and structure |
|---|
Score = 67.8 bits (165), Expect = 5e-13
Identities = 25/173 (14%), Positives = 49/173 (28%), Gaps = 20/173 (11%)
Query: 231 GDQTMTVEFLYNGKPIE----ASHRIRTVH-----AFGMVVLEILGTKIEDTGVYTCRAT 281
+ +E + + R G + I ++ D+G Y C
Sbjct: 28 RRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVI 87
Query: 282 NKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWF 341
+ + K + + LE G C P +V W
Sbjct: 88 CGAAWDYKYLTV------KVKASYMRIDTRILEVPGTG-EVQLTCQAR--GYPLAEVSWQ 138
Query: 342 HNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ P + + + V + ++ S + C WN + ++ T A I
Sbjct: 139 NVSVPANTSHIR--TPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAII 189
|
| >3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 1e-06
Identities = 25/181 (13%), Positives = 42/181 (23%), Gaps = 38/181 (20%)
Query: 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGH------RYRTFHDF---GIVILDILY 560
G S E +E + R + G + I
Sbjct: 16 VGSSVSLECDFDR--RECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPS 73
Query: 561 CYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQ-------------------LP 601
+SG Y C D ++K + I L
Sbjct: 74 VQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLA 133
Query: 602 EVEWFYNGKKLPHGHR---YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 658
EV W H + ++ L + S + C N + ++T A
Sbjct: 134 EVSWQNVSVPANTSHIRTPEGLYQVTSVLRLK-----PQPSRNFSCMFWNAHMKELTSAI 188
Query: 659 L 659
+
Sbjct: 189 I 189
|
| >3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 2e-06
Identities = 19/86 (22%), Positives = 27/86 (31%), Gaps = 11/86 (12%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIF------HKNRVKMVSDF---GFVVMDIAYV 369
G S EC E +E R ++ + G + I V
Sbjct: 17 GSSVSLECDFDRRECTE--LEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSV 74
Query: 370 QSHDSGEYVCRAWNKYGEDFTRATIK 395
Q DSG+Y C D+ T+K
Sbjct: 75 QVRDSGQYRCLVICGAAWDYKYLTVK 100
|
| >3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 9e-06
Identities = 30/216 (13%), Positives = 54/216 (25%), Gaps = 50/216 (23%)
Query: 577 YGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGH------RYRTFHDF---GIV 627
GS V+ L+C + E+E + R + G
Sbjct: 16 VGSSVS---LECDFDRR-----ECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKA 67
Query: 628 ILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSE 687
+ I +SG Y C D L ++ + +R +
Sbjct: 68 LFHIPSVQVRDSGQYRCLVICGAAWD----------YKYLTVKVKASYMRIDTRILEVPG 117
Query: 688 DGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF 747
G +A P V + P SH +
Sbjct: 118 TG-----------------EVQLTCQARGYP----LAEVSWQNVSVPANTSHIRTPEGLY 156
Query: 748 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
V +L K + + ++C N + S ++
Sbjct: 157 --QVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIID 190
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 5e-13
Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 10/97 (10%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
PP+ S + L E + +P + W HNG+P+ + +
Sbjct: 8 PPRVVSLEEPELRL----EHCIEFVVR--GNPPPTLHWLHNGQPLRESKIIHVEYYQEGE 61
Query: 363 VMD----IAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + +++G Y A N G
Sbjct: 62 ISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH 98
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 2e-11
Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 10/107 (9%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
PP+ S L E + G+ T+ +L+NG+P+ S I +
Sbjct: 8 PPRVVS----LEEPELRLEHCIEFVV--RGNPPPTLHWLHNGQPLRESKIIHVEYYQEGE 61
Query: 262 V----LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPP 304
+ L + G YT A N G A ++N + +
Sbjct: 62 ISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPFPVDE 108
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 60.6 bits (147), Expect = 3e-11
Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 10/95 (10%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT----TADF 121
P + +PE +E V + +P + W+ NG+PL +
Sbjct: 9 PRVVSLEEPE----LRLEHCIEFVV--RGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEI 62
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L + + G YT A N G +
Sbjct: 63 SEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTING 97
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 3e-11
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 10/96 (10%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
PP+ S L E + G+ T+ +L+NG+P+ S I +
Sbjct: 8 PPRVVS----LEEPELRLEHCIEFVV--RGNPPPTLHWLHNGQPLRESKIIHVEYYQEGE 61
Query: 751 V----LEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+ L + G YT A N G A ++N
Sbjct: 62 ISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTING 97
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 7e-10
Identities = 17/101 (16%), Positives = 28/101 (27%), Gaps = 12/101 (11%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTFHD 550
V P+ ++ E V +P + W +NG+ L +
Sbjct: 5 VYYPPRVVSLEEPE----LRLEHCIEFV---VRGNPPPTLHWLHNGQPLRESKIIHVEYY 57
Query: 551 FGIVI----LDILYCYEENSGVYECRATNKYGSDVTKASLK 587
I L N+G Y A N G+ +
Sbjct: 58 QEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH 98
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118 | Back alignment and structure |
|---|
Score = 56.0 bits (135), Expect = 9e-10
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 4/64 (6%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVI----LDILYCYEENSGVYECRATNKYGSDVTK 656
P + W +NG+ L + I L N+G Y A N G+
Sbjct: 35 PTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQT 94
Query: 657 ASLK 660
+
Sbjct: 95 INGH 98
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 69.4 bits (169), Expect = 6e-13
Identities = 30/173 (17%), Positives = 57/173 (32%), Gaps = 16/173 (9%)
Query: 232 DQTMTVEFLYNGKPIEASHRIRTVHAFGMVV-----LEILGTKIEDTGVYTCRA-TNKWG 285
+M V G S R+ V A L + G ++ED G YTC T G
Sbjct: 45 SGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQG 104
Query: 286 QAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGK 345
+ + L + P+ T+ ++ ++ L C + P ++ W +
Sbjct: 105 SRSVDIWLRVLA-----KPQNTAEVQKVQ-LTGEPVPMARCV-STGGRPPAQITWHSDLG 157
Query: 346 PIFHKNRVKMVSDFGFVVMD---IAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + ++V V + D C+ ++ E T+
Sbjct: 158 GMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVN 210
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 69.0 bits (168), Expect = 1e-12
Identities = 41/339 (12%), Positives = 89/339 (26%), Gaps = 80/339 (23%)
Query: 82 QPLHLEAQVEPKNDPN---LKIEWIFNGKPLELG------------------SRFKTTAD 120
+ L ++ N ++ W +G+ + + A+
Sbjct: 16 DSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAE 75
Query: 121 FGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKI 180
+L + + D+G YTC + +
Sbjct: 76 LRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDI------------------------- 110
Query: 181 QDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFL 240
LR V PQ T+E Q + L+ + + G + +
Sbjct: 111 -----WLR-----VLA-----KPQNTAEVQKVQ-LTGEPVPMAR-CVSTGGRPPAQITWH 153
Query: 241 YNGKPIEASHRIRTVHAFGMVV---LEILGTKIEDTGVYTCRATNKWGQAEI--SVNLEC 295
+ + + ++ + + V ++ + D TC+ ++ + +VNL
Sbjct: 154 SDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTV 213
Query: 296 VDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKM 355
PP+ + + A C +P W P+ +
Sbjct: 214 YY-----PPEVSISGYDNNWYLGQNEATLTCDARSNPEP-TGYNWSTTMGPL---PPFAV 264
Query: 356 VSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ I V + +C N G T+
Sbjct: 265 AQGAQLL---IRPVDKPINTTLICNVTNALGARQAELTV 300
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 67.4 bits (164), Expect = 3e-12
Identities = 37/334 (11%), Positives = 74/334 (22%), Gaps = 83/334 (24%)
Query: 498 FITQISDVTQLKEGQSAHFEARLTPVTDPD---LVVEWFYNGK-------------KLPH 541
+ + V G S L + W +G+
Sbjct: 3 VVQAPTQVPGF-LGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61
Query: 542 GHRYR-----TFHDFGIVILDILYCYEENSGVYECRA-TNKYGSDVTKASLK-------- 587
R + L + E+ G Y C T GS L+
Sbjct: 62 SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNT 121
Query: 588 -CVSKTNLILESQL------------PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYC 634
V K L E ++ W + +P+ + F + + +
Sbjct: 122 AEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWIL 181
Query: 635 Y---EENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRP 691
+ + C+ ++ ++ L P
Sbjct: 182 VPSSQVDGKNVTCKVEHESFEKPQLLTVN--------LTVYY-----------------P 216
Query: 692 PQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGM 749
P+ + + A +A P + + P+ +
Sbjct: 217 PEVSISGYDNNWYLGQNEATLTCDARSNP---EPTGYNWSTTMGPLPPFAVAQG------ 267
Query: 750 VVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
L I C TN G + + ++
Sbjct: 268 AQLLIRPVDKPINTTLICNVTNALGARQAELTVQ 301
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 58.6 bits (141), Expect = 2e-09
Identities = 32/262 (12%), Positives = 56/262 (21%), Gaps = 67/262 (25%)
Query: 49 AGKYQ----RQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVE-------PKNDPN 97
G Y P G V KP+ E Q + L + P
Sbjct: 91 EGNYTCLFVTFPQGSRSVDIW--LRVLAKPQNTA-EVQKVQLTGEPVPMARCVSTGGRPP 147
Query: 98 LKIEWIFNGKPLELGSRFKTTADFGFV---TLDLTEVYDRDQGIYTCRAWNLAGETFTST 154
+I W + + S+ L D TC+ + + E
Sbjct: 148 AQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLL 207
Query: 155 TIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSN 214
T+ + PP+ + +
Sbjct: 208 TVNLTVYY---------------------------------------PPEVSISGYDNNW 228
Query: 215 LSEGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIED 272
A +A P + + P+ + L I
Sbjct: 229 YLGQNEATLTCDARSNP---EPTGYNWSTTMGPLPPFAVAQG------AQLLIRPVDKPI 279
Query: 273 TGVYTCRATNKWGQAEISVNLE 294
C TN G + + ++
Sbjct: 280 NTTLICNVTNALGARQAELTVQ 301
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 56.6 bits (136), Expect = 9e-09
Identities = 47/312 (15%), Positives = 90/312 (28%), Gaps = 70/312 (22%)
Query: 319 GDSAHFECTLTPVNDPE---LKVEWFHNGKP----IFHKNRVKMVSDFGFVVMD------ 365
GDS C L N ++ W +G+ +FH+ + S+ +
Sbjct: 15 GDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGA 74
Query: 366 --------IAYVQSHDSGEYVCRAWNK-YGEDFTRATIKCFGKGGVYLDSLQPESLARIR 416
+ ++ D G Y C G ++ V +P++ A ++
Sbjct: 75 ELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLR------VLA---KPQNTAEVQ 125
Query: 417 ELENAQGQQP-----VAQAAPVAEAPKFIT------QISDVTQLKEGQSAHFEA----RL 461
+++ P P A+ IT + + +Q+ S L
Sbjct: 126 KVQLTGEPVPMARCVSTGGRPPAQ----ITWHSDLGGMPNTSQVPGFLSGTVTVTSLWIL 181
Query: 462 TPVTDPD---LVCELFSNFFPSQGQQPVAQAAP--VAEAPKFITQISDVTQLKEGQSAHF 516
P + D + C++ + ++P V P+ D A
Sbjct: 182 VPSSQVDGKNVTCKV-EH---ESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATL 237
Query: 517 --EARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRAT 574
+AR P W LP + L I + + C T
Sbjct: 238 TCDARSNP---EPTGYNWSTTMGPLPPFAVAQGA------QLLIRPVDKPINTTLICNVT 288
Query: 575 NKYGSDVTKASL 586
N G+ + ++
Sbjct: 289 NALGARQAELTV 300
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 53.6 bits (128), Expect = 1e-07
Identities = 22/202 (10%), Positives = 50/202 (24%), Gaps = 49/202 (24%)
Query: 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF 551
V P+ ++ V L + P + W + +P+ + F
Sbjct: 114 VLAKPQNTAEVQKVQ-LTGEPVPMARCV-STGGRPPAQITWHSDLGGMPNTSQVPGFLSG 171
Query: 552 GIVILDILYCY---EENSGVYECRATNKYGSDVTKAS----------------------- 585
+ + + + + C+ ++ +
Sbjct: 172 TVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLG 231
Query: 586 -----LKCVSKTNLILESQLP---EVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 637
L C +++N P W LP + L I +
Sbjct: 232 QNEATLTCDARSN-------PEPTGYNWSTTMGPLPPFAVAQGA------QLLIRPVDKP 278
Query: 638 NSGVYECRATNKYGSDVTKASL 659
+ C TN G+ + ++
Sbjct: 279 INTTLICNVTNALGARQAELTV 300
|
| >1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 3e-06
Identities = 31/236 (13%), Positives = 68/236 (28%), Gaps = 54/236 (22%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGK-------------KLPHGHRYR----- 619
G VT L C + + + + ++ W +G+ R
Sbjct: 15 GDSVT---LPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAAR 71
Query: 620 TFHDFGIVILDILYCYEENSGVYECRA-TNKYGSDVTKASLKCVSKTNLILESQLPELRR 678
+ L + E+ G Y C T GS L+
Sbjct: 72 LGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLR------------------ 113
Query: 679 QPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS 738
V PQ T+E Q + L+ + + G + + + + +
Sbjct: 114 ----VLA-----KPQNTAEVQKVQ-LTGEPVPMAR-CVSTGGRPPAQITWHSDLGGMPNT 162
Query: 739 HRIRTVHAFGMVV---LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQ 791
++ + + V ++ + D TC+ ++ + + + V+ P +
Sbjct: 163 SQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPE 218
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 67.0 bits (163), Expect = 7e-13
Identities = 30/164 (18%), Positives = 50/164 (30%), Gaps = 30/164 (18%)
Query: 242 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN-KWGQAEISVNLECVDKSK 300
G ++ E + G Y+C G A I ++
Sbjct: 37 GGVVLKEDALPGQK-------TEFKVDSDDQWGEYSCVFLPEPMGTANIQLH-------- 81
Query: 301 GQPPKFTSHIKSLEGLKDGDSAHFECTLT--PVNDPELKVEWFHNGKPIFHKN------R 352
PP+ + KS E + +G++A C P P W+ R
Sbjct: 82 -GPPRVKAV-KSSEHINEGETAMLVCKSESVP---PVTDWAWYKITDSEDKALMNGSESR 136
Query: 353 VKMVSDFGFVVMDIAYVQ-SHDSGEYVCRAWNKYGEDFTRATIK 395
+ S G + I + D G+Y C + G D T++
Sbjct: 137 FFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 180
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 63.1 bits (153), Expect = 1e-11
Identities = 29/191 (15%), Positives = 46/191 (24%), Gaps = 45/191 (23%)
Query: 499 ITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDI 558
T + D+ G L W G L +F +
Sbjct: 6 FTTVEDL-----GSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVD---- 56
Query: 559 LYCYEENSGVYECRATNKYGSDVT----------------------KASLKCVSKTNLIL 596
++ G Y C + A L C S++
Sbjct: 57 ---SDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESV--- 110
Query: 597 ESQLPEVEWFYNGKKLP------HGHRYRTFHDFGIVILDILYC-YEENSGVYECRATNK 649
+ + W+ R+ G L I E + G Y C T+
Sbjct: 111 -PPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSS 169
Query: 650 YGSDVTKASLK 660
GSD +L+
Sbjct: 170 KGSDQAIITLR 180
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 1e-09
Identities = 35/269 (13%), Positives = 60/269 (22%), Gaps = 101/269 (37%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
G C+L W G + + GEY
Sbjct: 13 GSKILLTCSLNDSATEVTGHRWLKGGVVLKE-------DALPGQKTEFKVDSDDQWGEYS 65
Query: 379 CRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPK 438
C +P+ A P
Sbjct: 66 CVFLP-----------------------------------------EPMGTANIQLHGPP 84
Query: 439 FITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKF 498
+ + + EG++A LVC+ +++ P
Sbjct: 85 RVKAVKSSEHINEGETA------------MLVCK--------------SESVP------- 111
Query: 499 ITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDI 558
++D K S L ++ V +L I ++
Sbjct: 112 --PVTDWAWYKITDSEDKA--LMNGSESRFFVSSSQGRSEL--------------HIENL 153
Query: 559 LYCYEENSGVYECRATNKYGSDVTKASLK 587
E + G Y C T+ GSD +L+
Sbjct: 154 NM--EADPGQYRCNGTSSKGSDQAIITLR 180
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 2e-09
Identities = 28/219 (12%), Positives = 50/219 (22%), Gaps = 58/219 (26%)
Query: 82 QPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTC 141
+ L + W+ G L+ + + D G Y+C
Sbjct: 14 SKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQK-------TEFKVDSDDQWGEYSC 66
Query: 142 RAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGR 201
T
Sbjct: 67 VFLPEPMGTANIQLHG-------------------------------------------- 82
Query: 202 PPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQ---TMTVEFLYNGKPIEASHRIRTVH 256
PP+ + +++EGE A ++ +P + + R
Sbjct: 83 PPRVKAVKSSE-HINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS 141
Query: 257 AFGMVVLEILGTKIE-DTGVYTCRATNKWGQAEISVNLE 294
+ G L I +E D G Y C T+ G + + L
Sbjct: 142 SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 180
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184 | Back alignment and structure |
|---|
Score = 53.5 bits (128), Expect = 3e-08
Identities = 32/217 (14%), Positives = 56/217 (25%), Gaps = 50/217 (23%)
Query: 573 ATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDIL 632
GS + L C + W G L +F +
Sbjct: 8 TVEDLGSKIL---LTCSLNDSATEV---TGHRWLKGGVVLKEDALPGQKTEFKVD----- 56
Query: 633 YCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPP 692
++ G Y C +P G + + PP
Sbjct: 57 --SDDQWGEYSCVFLP------------------------------EPMGTANIQLHGPP 84
Query: 693 QFTSEFQHLSNLSEGEIAHF--EASLIPVGDQ---TMTVEFLYNGKPIEASHRIRTVHAF 747
+ + +++EGE A ++ +P + + R +
Sbjct: 85 RVKAVKSSE-HINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 143
Query: 748 GMVVLEILGTKIE-DTGVYTCRATNKWGQAEISVNLE 783
G L I +E D G Y C T+ G + + L
Sbjct: 144 GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 180
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 1e-12
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 12/93 (12%)
Query: 301 GQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG 360
G + S + L G + +C P +WF N P+ H+ + +
Sbjct: 1 GSKLQICVEPTSQK-LMPGSTLVLQCVAV--GSPIPHYQWFKNELPLTHETKKLYM---- 53
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRAT 393
+ YV G Y C +N ++
Sbjct: 54 -----VPYVDLEHQGTYWCHVYNDRDSQDSKKV 81
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-08
Identities = 16/93 (17%), Positives = 25/93 (26%), Gaps = 14/93 (15%)
Query: 64 AKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
+K V + G L L+ P +W N PL ++
Sbjct: 2 SKLQICVEPTSQKLMPGS--TLVLQCVAV--GSPIPHYQWFKNELPLTHETKK------- 50
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTT 155
+ V QG Y C +N +
Sbjct: 51 --LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKV 81
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-07
Identities = 16/95 (16%), Positives = 27/95 (28%), Gaps = 14/95 (14%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTFHDF 551
+ + + L G + + P +WF N L H +
Sbjct: 1 GSKLQICVEPTSQK-LMPGSTLVLQCV---AVGSPIPHYQWFKNELPLTHETKK------ 50
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+ + Y E+ G Y C N S +K
Sbjct: 51 ---LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE 82
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 7e-06
Identities = 14/91 (15%), Positives = 23/91 (25%), Gaps = 16/91 (17%)
Query: 200 GRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA 257
G Q E L G + A G ++ N P+ +
Sbjct: 1 GSKLQICVEPTSQK-LMPGSTLVLQCVAV----GSPIPHYQWFKNELPLTHETK------ 49
Query: 258 FGMVVLEILGTKIEDTGVYTCRATNKWGQAE 288
+ + +E G Y C N +
Sbjct: 50 ---KLYMVPYVDLEHQGTYWCHVYNDRDSQD 77
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 7e-06
Identities = 14/91 (15%), Positives = 23/91 (25%), Gaps = 16/91 (17%)
Query: 689 GRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA 746
G Q E L G + A G ++ N P+ +
Sbjct: 1 GSKLQICVEPTSQK-LMPGSTLVLQCVAV----GSPIPHYQWFKNELPLTHETK------ 49
Query: 747 FGMVVLEILGTKIEDTGVYTCRATNKWGQAE 777
+ + +E G Y C N +
Sbjct: 50 ---KLYMVPYVDLEHQGTYWCHVYNDRDSQD 77
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-05
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 9/59 (15%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
P +WF N L H + + + Y E+ G Y C N S +K
Sbjct: 33 PHYQWFKNELPLTHETKK---------LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVE 82
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 65.8 bits (160), Expect = 2e-12
Identities = 22/137 (16%), Positives = 38/137 (27%), Gaps = 26/137 (18%)
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKD 318
G L I KIED+ Y C ++ + ++ V F S L
Sbjct: 66 GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLV--------------FGLTANSDTHLLQ 111
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
G S P V+ + + ++ ++ DSG +
Sbjct: 112 GQSLTLTLESPP--GSSPSVQCRSPRGKNIQGGKT----------LSVSQLELQDSGTWT 159
Query: 379 CRAWNKYGEDFTRATIK 395
C + + I
Sbjct: 160 CTVLQNQKKVEFKIDIV 176
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 5e-08
Identities = 28/188 (14%), Positives = 51/188 (27%), Gaps = 41/188 (21%)
Query: 502 ISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR----------------- 544
+ V K+G + + + W + + G++
Sbjct: 1 MKKVVLGKKGDTVELTCTASQK--KSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADS 58
Query: 545 YRTFHDFGIVILDILYCYEENSGVYECRATNKYGS-DVTKASLKCVSKTNLILESQL--- 600
R+ D G L I E+S Y C ++ + L S T+L+ L
Sbjct: 59 RRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLT 118
Query: 601 --------PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652
P V+ K G + L + ++SG + C
Sbjct: 119 LESPPGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQNQKK 168
Query: 653 DVTKASLK 660
K +
Sbjct: 169 VEFKIDIV 176
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 1e-05
Identities = 17/117 (14%), Positives = 39/117 (33%), Gaps = 12/117 (10%)
Query: 40 KVQEVEHALAGKYQRQPSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLK 99
++ ++ + Y + +E VF + + L + Q L L + P +
Sbjct: 71 IIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPP--GSSPS 128
Query: 100 IEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
++ G + TL ++++ +D G +TC + I
Sbjct: 129 VQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 175
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 5e-05
Identities = 29/225 (12%), Positives = 55/225 (24%), Gaps = 77/225 (34%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHR-----------------YRT 620
G V L C + + + W + + G++ R+
Sbjct: 10 GDTVE---LTCTASQK-----KSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRS 61
Query: 621 FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQP 680
D G L I E+S Y C ++ + +L+ Q L +
Sbjct: 62 LWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLES 121
Query: 681 AGVPDSEDGRPPQFT--SEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS 738
P S GK I+
Sbjct: 122 PPGS------SPSVQCRSP---------------------------------RGKNIQGG 142
Query: 739 HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
L + +++D+G +TC + E +++
Sbjct: 143 K-----------TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIV 176
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 65.6 bits (159), Expect = 3e-12
Identities = 21/149 (14%), Positives = 44/149 (29%), Gaps = 11/149 (7%)
Query: 244 KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQP 303
I++ + + L + + Y C AT + + E + +E + P
Sbjct: 37 TQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVE-IYSFPKDP 95
Query: 304 PKFTSHIKSLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
I L+ G +C++ V L+++ + + ++
Sbjct: 96 -----EIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLE 150
Query: 363 VMDIAY----VQSHDSGEYVCRAWNKYGE 387
+ V VCRA E
Sbjct: 151 TKSLEVTFTPVIEDIGKVLVCRAKLHIDE 179
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 6e-05
Identities = 18/178 (10%), Positives = 38/178 (21%), Gaps = 35/178 (19%)
Query: 525 DPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584
W P + + ++ + N Y C AT +
Sbjct: 28 CESPFFSW-RTQIDSPLNGKVTNEGTTSTLTMNPVS--FGNEHSYLCTATCESRKLEKGI 84
Query: 585 SLKCVSKTNLILESQL------------------------PEVEWFYNGKKLPHGHRYRT 620
++ + E L E++ +
Sbjct: 85 QVE-IYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLED 143
Query: 621 FHDFGIVILDILYCY----EENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLP 674
+ + + E+ V CRA S+ V + L+ +
Sbjct: 144 ADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEM---DSVPTVRQAVKELQVYIS 198
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 6e-04
Identities = 26/212 (12%), Positives = 53/212 (25%), Gaps = 42/212 (19%)
Query: 570 ECRATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVIL 629
E R + G V+ L C + + P W P + + +
Sbjct: 8 ESRYLAQIGDSVS---LTCSTTGC-----ESPFFSW-RTQIDSPLNGKVTNEGTTSTLTM 58
Query: 630 DILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDG 689
+ + N Y C AT + ++ + E L E G
Sbjct: 59 NPVS--FGNEHSYLCTATCESRKLEKGIQVE-IYSFPKDPEIHLS---------GPLEAG 106
Query: 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI----RTVH 745
+P + P + ++ L +++ + R
Sbjct: 107 KPITVKCSVADVY---------------PFD--RLEIDLLKGDHLMKSQEFLEDADRKSL 149
Query: 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 777
+ + + V CRA + +
Sbjct: 150 ETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD 181
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 6e-12
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 5/92 (5%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
PP + + + C P + W +G + ++ + G
Sbjct: 8 PPVIRQGPVNQT-VAVDGTFVLSCV--ATGSPVPTILWRKDGVLVSTQDSRIKQLENG-- 62
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
V+ I Y + D+G Y C A GE A I
Sbjct: 63 VLQIRYAKLGDTGRYTCIASTPSGEATWSAYI 94
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 3e-11
Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 8/117 (6%)
Query: 193 GVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI 252
G S PP + + ++ G T+ + +G +
Sbjct: 1 GSSGSS--GPPVIRQGPVNQT-VAVDGTFVLSCV--ATGSPVPTILWRKDGVLVSTQDSR 55
Query: 253 RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKG-QPPKFTS 308
G+ L+I K+ DTG YTC A+ G+A S +E + QPP+ T
Sbjct: 56 IKQLENGV--LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTD 110
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 59.8 bits (145), Expect = 4e-11
Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 9/110 (8%)
Query: 682 GVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI 741
G S PP + + ++ G T+ + +G +
Sbjct: 1 GSSGSS--GPPVIRQGPVNQT-VAVDGTFVLSCV--ATGSPVPTILWRKDGVLVSTQDSR 55
Query: 742 RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQ 791
G+ L+I K+ DTG YTC A+ G+A S +E V
Sbjct: 56 IKQLENGV--LQIRYAKLGDTGRYTCIASTPSGEATWSAYIE--VQEFGV 101
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 1e-10
Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 7/113 (6%)
Query: 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTFHDF 551
+ P + T + + T P + W +G + +
Sbjct: 6 SGPPVIRQGPVNQT-VAVDGTFVLSCV---ATGSPVPTILWRKDGVLVSTQDSRIKQLEN 61
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEVE 604
G+ L I Y ++G Y C A+ G A ++ + + +
Sbjct: 62 GV--LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPN 112
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 2e-09
Identities = 20/100 (20%), Positives = 27/100 (27%), Gaps = 5/100 (5%)
Query: 58 GPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT 117
G + PV + L P I W +G +
Sbjct: 1 GSSGSSGPPVIRQGPV-NQTVAVDGTFVLSCVAT--GSPVPTILWRKDGVLVSTQDSRIK 57
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
+ G L + D G YTC A +GE S I
Sbjct: 58 QLENG--VLQIRYAKLGDTGRYTCIASTPSGEATWSAYIE 95
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 1e-07
Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
P + W +G + + G+ L I Y ++G Y C A+ G A +
Sbjct: 38 PTILWRKDGVLVSTQDSRIKQLENGV--LQIRYAKLGDTGRYTCIASTPSGEATWSAYI 94
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 7e-12
Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 7/99 (7%)
Query: 489 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRT 547
++ + P + ++ T L +A + + T DP V+ W G P T
Sbjct: 2 SSGSSGPPIILQGPANQT-LAVDGTALLKCK---ATGDPLPVISWLKEGFTFPGRDPRAT 57
Query: 548 FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+ G L I ++G Y C AT+ G A L
Sbjct: 58 IQEQGT--LQIKNLRISDTGTYTCVATSSSGETSWSAVL 94
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 8e-12
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 5/92 (5%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
PP + L +A +C T DP + W G ++ + + G
Sbjct: 8 PPIILQGPANQT-LAVDGTALLKCKAT--GDPLPVISWLKEGFTFPGRDPRATIQEQG-- 62
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ I ++ D+G Y C A + GE A +
Sbjct: 63 TLQIKNLRISDTGTYTCVATSSSGETSWSAVL 94
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 2e-11
Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 193 GVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASH 250
G S PP + + L+ A + A+ GD + +L G
Sbjct: 1 GSSGSS--GPPIILQGPANQT-LAVDGTALLKCKAT----GDPLPVISWLKEGFTFPGRD 53
Query: 251 RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
T+ G L+I +I DTG YTC AT+ G+ S L+
Sbjct: 54 PRATIQEQG--TLQIKNLRISDTGTYTCVATSSSGETSWSAVLD 95
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 2e-11
Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 682 GVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASH 739
G S PP + + L+ A + A+ GD + +L G
Sbjct: 1 GSSGSS--GPPIILQGPANQT-LAVDGTALLKCKAT----GDPLPVISWLKEGFTFPGRD 53
Query: 740 RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
T+ G L+I +I DTG YTC AT+ G+ S L+
Sbjct: 54 PRATIQEQG--TLQIKNLRISDTGTYTCVATSSSGETSWSAVLD 95
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 1e-08
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
P + W G P T + G L I ++G Y C AT+ G A L
Sbjct: 38 PVISWLKEGFTFPGRDPRATIQEQGT--LQIKNLRISDTGTYTCVATSSSGETSWSAVL 94
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 1e-08
Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 5/99 (5%)
Query: 58 GPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT 117
G + P+ + L L+ + DP I W+ G T
Sbjct: 1 GSSGSSGPPIILQGPA-NQTLAVDGTALLKCKAT--GDPLPVISWLKEGFTFPGRDPRAT 57
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ G TL + + D G YTC A + +GET S +
Sbjct: 58 IQEQG--TLQIKNLRISDTGTYTCVATSSSGETSWSAVL 94
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 61.9 bits (150), Expect = 1e-11
Identities = 14/101 (13%), Positives = 25/101 (24%), Gaps = 15/101 (14%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKM------ 355
P L H C V+ P + W NG + + +
Sbjct: 3 MPASVQ-------LHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPA 55
Query: 356 -VSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + ++G Y A N +G+
Sbjct: 56 ANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAA 96
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 59.6 bits (144), Expect = 7e-11
Identities = 17/91 (18%), Positives = 22/91 (24%), Gaps = 8/91 (8%)
Query: 505 VTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRT-------FHDFGIVIL 556
QL H V P + W +NG L T L
Sbjct: 6 SVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCL 65
Query: 557 DILYCYEENSGVYECRATNKYGSDVTKASLK 587
+ N+G Y A N +G
Sbjct: 66 RLNQPTHVNNGNYTLLAANPFGQASASIMAA 96
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 58.8 bits (142), Expect = 1e-10
Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 15/112 (13%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPV-GDQTMTVEFLYNGKPIEASHRIRT------ 254
P L H V G ++ +L+NG + + I T
Sbjct: 3 MPASV-------QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPA 55
Query: 255 -VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPK 305
L + + G YT A N +GQA S+ +D P+
Sbjct: 56 ANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPE 107
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 57.3 bits (138), Expect = 5e-10
Identities = 20/100 (20%), Positives = 30/100 (30%), Gaps = 15/100 (15%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPV-GDQTMTVEFLYNGKPIEASHRIRT------ 743
P L H V G ++ +L+NG + + I T
Sbjct: 3 MPASV-------QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPA 55
Query: 744 -VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
L + + G YT A N +GQA S+
Sbjct: 56 ANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMA 95
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 1e-09
Identities = 13/67 (19%), Positives = 18/67 (26%), Gaps = 7/67 (10%)
Query: 601 PEVEWFYNGKKLPHGHRYRT-------FHDFGIVILDILYCYEENSGVYECRATNKYGSD 653
P + W +NG L T L + N+G Y A N +G
Sbjct: 30 PSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA 89
Query: 654 VTKASLK 660
Sbjct: 90 SASIMAA 96
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 7e-08
Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 14/91 (15%)
Query: 77 KLGEAQPLH---LEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT-------TADFGFVTL 126
+L A +H + V P + W+FNG L S T L
Sbjct: 8 QLHTAVEMHHWCIPFSV--DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCL 65
Query: 127 DLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
L + + G YT A N G+ S +I
Sbjct: 66 RLNQPTHVNNGNYTLLAANPFGQ--ASASIM 94
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 2e-11
Identities = 24/155 (15%), Positives = 41/155 (26%), Gaps = 28/155 (18%)
Query: 233 QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 292
+ + ++ +N I + I + D+G Y C+ + +
Sbjct: 36 EDNSTQWFHNESLISSQASS----------YFIDAATVNDSGEYRCQTNLSTLSDPVQLE 85
Query: 293 LECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNR 352
+ K+ D H C + N KV + NGK + +
Sbjct: 86 VHI-------GWLLLQA--PRWVFKEEDPIHLRCH-SWKNTALHKVTYLQNGKDRKYFHH 135
Query: 353 VKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGE 387
I DSG Y CR
Sbjct: 136 NSDFH--------IPKATLKDSGSYFCRGLVGSKN 162
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 3e-11
Identities = 33/184 (17%), Positives = 53/184 (28%), Gaps = 46/184 (25%)
Query: 492 VAEAPKFITQIS-DVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD 550
+ PK + + + E S + + D +WF+N +
Sbjct: 2 TEDLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSP-EDNSTQWFHNESLISSQAS------ 54
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDVTK----------------------ASLKC 588
I +SG Y C+ SD + L+C
Sbjct: 55 ----SYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRC 110
Query: 589 VSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATN 648
S N + L +V + NGK + H FH I ++SG Y CR
Sbjct: 111 HSWKN----TALHKVTYLQNGKDRKYFHHNSDFH-----IPKAT---LKDSGSYFCRGLV 158
Query: 649 KYGS 652
+
Sbjct: 159 GSKN 162
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 2e-06
Identities = 33/197 (16%), Positives = 48/197 (24%), Gaps = 57/197 (28%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 637
VT LKC + + +WF+N + I
Sbjct: 22 KDSVT---LKCQGAYS----PEDNSTQWFHNESLISSQAS----------SYFIDAATVN 64
Query: 638 NSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSE 697
+SG Y C+ SD + LE + L Q
Sbjct: 65 DSGEYRCQTNLSTLSDPVQ------------LEVHIGWLLLQAPRWV------------- 99
Query: 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGT 757
E + H V +L NGK + H I
Sbjct: 100 ------FKEEDPIHLRCH-SWKNTALHKVTYLQNGKDRKYFHHNSD--------FHIPKA 144
Query: 758 KIEDTGVYTCRATNKWG 774
++D+G Y CR
Sbjct: 145 TLKDSGSYFCRGLVGSK 161
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 3e-05
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 11/70 (15%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
DS +C + + +WFHN I + I +DSGEY
Sbjct: 22 KDSVTLKCQGAY-SPEDNSTQWFHNESLISSQASS----------YFIDAATVNDSGEYR 70
Query: 379 CRAWNKYGED 388
C+ D
Sbjct: 71 CQTNLSTLSD 80
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 2e-11
Identities = 36/301 (11%), Positives = 66/301 (21%), Gaps = 76/301 (25%)
Query: 96 PNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLT-EVYDRDQGIYTCRAWNLAGETFTST 154
++ + L D ++ D TC T
Sbjct: 34 SEAQVHLALGDQRLN--PTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQ 91
Query: 155 TIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSN 214
T+ ++ P P
Sbjct: 92 TV-----------------------------TIYSFP----------APNVILTKP---E 109
Query: 215 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTG 274
+SEG + P + NG P + L + T ++
Sbjct: 110 VSEGTEVTVKCEAHP------RAKVTLNGVPAQPLG--------PRAQLLLKATPEDNGR 155
Query: 275 VYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEG-LKDGDSAHFECTLTPVND 333
++C AT + I N + P+ + C +
Sbjct: 156 SFSCSATLEVAGQLIHKNQT-RELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWG--N 212
Query: 334 PELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRAT 393
P +++ +G V+ G Y+CRA + GE T
Sbjct: 213 PLPELKCLKDGTFPLPIGESVTVT-------------RDLEGTYLCRARSTQGEVTREVT 259
Query: 394 I 394
+
Sbjct: 260 V 260
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 58.9 bits (142), Expect = 1e-09
Identities = 36/288 (12%), Positives = 70/288 (24%), Gaps = 45/288 (15%)
Query: 309 HIKSLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDI- 366
+ S L+ C+L + E +V + + V +D +
Sbjct: 8 QLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRL--NPTVTYGNDSFSAKASVS 65
Query: 367 AYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQP 426
+ + C T T+ + P + + E ++G +
Sbjct: 66 VTAEDEGTQRLTCAVILGNQSQETLQTVTIYSF---------PAPNVILTKPEVSEGTEV 116
Query: 427 V----AQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTD-PDLVCELFSNFFPSQ 481
A ++ V G A + TP + C
Sbjct: 117 TVKCEAHPRAKVT-------LNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQL 169
Query: 482 GQQPVAQAAPVAEAPKFI-TQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKK-L 539
+ + V P+ E + +P ++ +G L
Sbjct: 170 IHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWG--NPLPELKCLKDGTFPL 227
Query: 540 PHGHRYR-TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
P G T G Y CRA + G + ++
Sbjct: 228 PIGESVTVTRDL---------------EGTYLCRARSTQGEVTREVTV 260
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 55.1 bits (132), Expect = 2e-08
Identities = 47/310 (15%), Positives = 77/310 (24%), Gaps = 73/310 (23%)
Query: 501 QISDVTQLKEGQSAHFE---ARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILD 557
Q+ L+ L PV + V ++L +D
Sbjct: 8 QLVSPRVLEVDTQGTVVCSLDGLFPV--SEAQVHLALGDQRLNP--TVTYGNDSFSAKAS 63
Query: 558 ILYCYE-ENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEV------------- 603
+ E E + C S T ++ S + PEV
Sbjct: 64 VSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAH 123
Query: 604 ---EWFYNGKKL-PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
+ NG P G R + L + E+N + C AT + + +
Sbjct: 124 PRAKVTLNGVPAQPLGPRAQ---------LLLKATPEDNGRSFSCSATLEVAGQLIHKN- 173
Query: 660 KCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPV 719
L P ++ P + E
Sbjct: 174 -----QTRELRVLYG---------PRLDERDCPGNWT-------WPENSQQTPMCQ--AW 210
Query: 720 GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 779
G+ ++ L +G TV + G Y CRA + G+
Sbjct: 211 GNPLPELKCLKDGTFPLPIGESVTV-------------TRDLEGTYLCRARSTQGEVTRE 257
Query: 780 VNLECVVWSP 789
V + V SP
Sbjct: 258 VTV--NVLSP 265
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 5e-05
Identities = 35/251 (13%), Positives = 58/251 (23%), Gaps = 74/251 (29%)
Query: 444 SDVTQLKEGQSAHFEARLTPV--TDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQ 501
VT + SA +T L C + Q Q + P
Sbjct: 49 PTVTYGNDSFSAKASVSVTAEDEGTQRLTCAV-IL---GNQSQETLQTVTIYSFPAPNVI 104
Query: 502 ISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYC 561
++ + EG + P + + P
Sbjct: 105 LTKPE-VSEGTEVTVKCEAHP--RAKVTLNGVPAQPLGPRAQLLLKATP----------- 150
Query: 562 YEENSGVYECRATNKYGSDVTK-------------------------------ASLKCVS 590
E+N + C AT + + + C +
Sbjct: 151 -EDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQA 209
Query: 591 KTNLILESQLPEVEWFYNGKK-LPHGHRYR-TFHDFGIVILDILYCYEENSGVYECRATN 648
N LPE++ +G LP G T G Y CRA +
Sbjct: 210 WGN-----PLPELKCLKDGTFPLPIGESVTVTRDL---------------EGTYLCRARS 249
Query: 649 KYGSDVTKASL 659
G + ++
Sbjct: 250 TQGEVTREVTV 260
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 2e-04
Identities = 28/228 (12%), Positives = 55/228 (24%), Gaps = 67/228 (29%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVT 125
++ KPE G + ++ + P+ + NG P +
Sbjct: 100 APNVILTKPEVSEGT--EVTVKCEAHPR------AKVTLNGVPAQPLG--------PRAQ 143
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEE 185
L L + + ++C A ++ R +
Sbjct: 144 LLLKATPEDNGRSFSCSATLEVAGQLIHKN------QTRELRVLYG-------------- 183
Query: 186 SLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKP 245
P ++ P + E G+ ++ L +G
Sbjct: 184 ---------PRLDERDCPGNWT-------WPENSQQTPMCQ--AWGNPLPELKCLKDGTF 225
Query: 246 IEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
TV + G Y CRA + G+ V +
Sbjct: 226 PLPIGESVTV-------------TRDLEGTYLCRARSTQGEVTREVTV 260
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 63.8 bits (154), Expect = 3e-11
Identities = 25/166 (15%), Positives = 43/166 (25%), Gaps = 30/166 (18%)
Query: 254 TVHAFGMVVLEILGTKIEDTGVYTCRATNK-----WGQAEISVNLECVDKSKGQPPKFTS 308
+V L + +D G Y C+ +G SV L+ V S
Sbjct: 83 SVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLK-VTGHTPSNNVHVS 141
Query: 309 HIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI-----FHKNRVKMVSDFGFVV 363
+ ++ + +G+ C T V W+ + + FG
Sbjct: 142 TAEVVQ-VDEGNDITMTCPCTD--CANANVTWYTGPTFFENYETGTYQPLANKNQFGITW 198
Query: 364 MD----------------IAYVQSHDSGEYVCRAWNKYGEDFTRAT 393
I + D+G C GE +
Sbjct: 199 FSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRS 244
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 1e-06
Identities = 29/298 (9%), Positives = 56/298 (18%), Gaps = 71/298 (23%)
Query: 499 ITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTFH--DFGIVI 555
+ ++ G + V+ W ++ + +
Sbjct: 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 64
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHG 615
Y+E+ G + RA+ + T
Sbjct: 65 FVESDSYKESFGDFLGRASVANLAAPT--------------------------------- 91
Query: 616 HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPE 675
+ + + ++ G Y C+ K V
Sbjct: 92 ----------LRLTHVH---PQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNV 138
Query: 676 LRRQPAGVP-----------DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM 724
V D T + E ++
Sbjct: 139 HVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGP-TFFENYETGTYQPLANKNQFGIT 197
Query: 725 TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
E + R G L I KI D G C G+ + +
Sbjct: 198 WF-------SSEIAGR---ASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSS 245
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 47.6 bits (112), Expect = 6e-06
Identities = 27/181 (14%), Positives = 47/181 (25%), Gaps = 22/181 (12%)
Query: 117 TTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEG 176
+ A+ TL LT V+ +D G Y C+ + T S + T
Sbjct: 83 SVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRT-EFGLDAKSVVLKVTGHTPSNNVHVS 141
Query: 177 LEKIQDLEE----SLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGD 232
++ ++E ++ T + E ++
Sbjct: 142 TAEVVQVDEGNDITMTCPCTDCA------NANVTWYTGP-TFFENYETGTYQPLANKNQF 194
Query: 233 QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 292
E + R G L I KI D G C G+ + +
Sbjct: 195 GITWF-------SSEIAGR---ASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRS 244
Query: 293 L 293
Sbjct: 245 S 245
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 8e-06
Identities = 29/281 (10%), Positives = 56/281 (19%), Gaps = 65/281 (23%)
Query: 319 GDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEY 377
G + C+ N + W P V Y + +
Sbjct: 17 GGTVELPCSYQLANDTQPPVISWLKGASPDRST-----------KVFKGNYNWQGEGLGF 65
Query: 378 VC--RAWNKYGEDFTRATIKCFGKGGVYLDSLQPE----------SLARIRELENAQGQQ 425
V +G+ RA++ + L + P+ + E
Sbjct: 66 VESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSV 125
Query: 426 PVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQP 485
+ ++ V + EG C
Sbjct: 126 VLKVTGHTPSNNVHVSTAEVVQ-VDEGNDITMT------------CP------------- 159
Query: 486 VAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY 545
A +T + T + ++ ++ G R
Sbjct: 160 -CTDCANAN----VTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAG-------RA 207
Query: 546 RTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+VI ++G C G S
Sbjct: 208 SFSGARNLVIRAAK---ITDAGRVWCELATGQGELDADRSS 245
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 4e-11
Identities = 33/200 (16%), Positives = 67/200 (33%), Gaps = 37/200 (18%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGH-RYRTFHDFGIVILDILYCYE 636
G+ V L C ++ ++W NG++LP H ++ DF V
Sbjct: 14 GTSVE---LTCPLDSD-------ENLKWEKNGQELPQKHDKHLVLQDFSEV--------- 54
Query: 637 ENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTS 696
E+SG Y C + + + ++ A D++ + S
Sbjct: 55 EDSGYYVCYTPASNKNTYLYLKAR---------VGSADDAKKDAAKKDDAKKDDAKKDGS 105
Query: 697 EFQHLSNLSEGEIAHFEASLI-PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEIL 755
+ NL + + + + S++ G T+++L +G I + + G +
Sbjct: 106 QTNKAKNLVQVDGSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKD-- 163
Query: 756 GTKIEDTGVYTCRATNKWGQ 775
G Y C+ +
Sbjct: 164 -----PRGTYQCQGAKETSN 178
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186 | Back alignment and structure |
|---|
Score = 58.3 bits (140), Expect = 7e-10
Identities = 24/166 (14%), Positives = 46/166 (27%), Gaps = 41/166 (24%)
Query: 242 NGKPIEASH-RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD--- 297
NG+ + H + + F +++ED+G Y C + +
Sbjct: 34 NGQELPQKHDKHLVLQDF---------SEVEDSGYYVCYTPASNKNTYLYLKARVGSADD 84
Query: 298 ----------------KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWF 341
K G ++ ++G + S C + ++W
Sbjct: 85 AKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTC-----GLTDKTIKWL 139
Query: 342 HNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGE 387
+G I N K + G D G Y C+ +
Sbjct: 140 KDGSIISPLNATKNTWNLGNNAKD-------PRGTYQCQGAKETSN 178
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 2e-07
Identities = 29/193 (15%), Positives = 59/193 (30%), Gaps = 39/193 (20%)
Query: 95 DPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTST 154
D + ++W NG+ L D +EV D G Y C +T
Sbjct: 24 DSDENLKWEKNGQELPQKHDKHLVLQ------DFSEV--EDSGYYVCYTPASNK----NT 71
Query: 155 TIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSN 214
+Y + + + ++ K D ++ S+ N
Sbjct: 72 YLYLKARVGSADDAKKDAAKKDDAKKDDAKKD-------------------GSQTNKAKN 112
Query: 215 LSEGEIAHFEASLI-PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDT 273
L + + + + S++ G T+++L +G I + + G +
Sbjct: 113 LVQVDGSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATKNTWNLGNNAK-------DPR 165
Query: 274 GVYTCRATNKWGQ 286
G Y C+ +
Sbjct: 166 GTYQCQGAKETSN 178
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 4e-07
Identities = 26/171 (15%), Positives = 46/171 (26%), Gaps = 59/171 (34%)
Query: 525 DPDLVVEWFYNGKKLPHGH-RYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS---- 579
D D ++W NG++LP H ++ DF V E+SG Y C +
Sbjct: 24 DSDENLKWEKNGQELPQKHDKHLVLQDFSEV---------EDSGYYVCYTPASNKNTYLY 74
Query: 580 ------DVTKASLKCVSKTN--------------------------------LILESQLP 601
A K + L
Sbjct: 75 LKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTDK 134
Query: 602 EVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652
++W +G + + + + G D G Y+C+ + +
Sbjct: 135 TIKWLKDGSIISPLNATKNTWNLGNNAKDP-------RGTYQCQGAKETSN 178
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 3e-05
Identities = 26/142 (18%), Positives = 44/142 (30%), Gaps = 22/142 (15%)
Query: 14 SGTLKCL---GQKDIYLETQHPMGAAGLEKVQEVEHALAGKYQRQPSGPEETFAKPVFIV 70
SG C K+ YL + +G+A K + A K + G + AK + V
Sbjct: 57 SGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQV 116
Query: 71 PLKPEFKLGEAQPLHLEAQVEPK-NDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLT 129
+ V + I+W+ +G + + K T + G D
Sbjct: 117 DGSRG-----------DGSVLLTCGLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKD-- 163
Query: 130 EVYDRDQGIYTCRAWNLAGETF 151
+G Y C+
Sbjct: 164 -----PRGTYQCQGAKETSNPL 180
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 4e-04
Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 19/142 (13%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
G S C L D + ++W NG+ + K+ +V + + DSG YV
Sbjct: 14 GTSVELTCPL----DSDENLKWEKNGQELPQKHDKHLVLQ--------DFSEVEDSGYYV 61
Query: 379 CRAWNKYGEDF----TRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVA 434
C + R K + A+ + + + V
Sbjct: 62 CYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRG 121
Query: 435 EAPKFIT---QISDVTQLKEGQ 453
+ +T + LK+G
Sbjct: 122 DGSVLLTCGLTDKTIKWLKDGS 143
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 2e-10
Identities = 31/184 (16%), Positives = 54/184 (29%), Gaps = 46/184 (25%)
Query: 492 VAEAPKFITQIS-DVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD 550
+ PK + + ++ E S + + D +WF+N +
Sbjct: 2 TEDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSP-EDQSTQWFHNESLISSQAS------ 54
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDVTK----------------------ASLKC 588
I ++SG Y C+ SD + L+C
Sbjct: 55 ----SYFIDAATVDDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRC 110
Query: 589 VSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATN 648
S N + L +V + NGK + H F+ ++SG Y CR
Sbjct: 111 HSWKN----TALHKVTYLQNGKGRKYFHHNSDFYIPKAT--------LKDSGSYFCRGLV 158
Query: 649 KYGS 652
+
Sbjct: 159 GSKN 162
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 5e-10
Identities = 29/157 (18%), Positives = 48/157 (30%), Gaps = 32/157 (20%)
Query: 233 QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 292
+ + ++ +N I + I ++D+G Y C+ + +
Sbjct: 36 EDQSTQWFHNESLISSQASS----------YFIDAATVDDSGEYRCQTQLSTLSDPVQLE 85
Query: 293 LECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI--FHK 350
+ + Q P++ K+ D H C + N KV + NGK FH
Sbjct: 86 VH-IGWLLLQAPRWV--------FKEEDPIHLRC-HSWKNTALHKVTYLQNGKGRKYFHH 135
Query: 351 NRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGE 387
N I DSG Y CR
Sbjct: 136 NSD----------FYIPKATLKDSGSYFCRGLVGSKN 162
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 9e-06
Identities = 37/222 (16%), Positives = 57/222 (25%), Gaps = 58/222 (26%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 637
VT LKC + + +WF+N + I +
Sbjct: 22 KDSVT---LKCQGAYS----PEDQSTQWFHNESLISSQAS----------SYFIDAATVD 64
Query: 638 NSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSE 697
+SG Y C+ SD + LE + L Q P
Sbjct: 65 DSGEYRCQTQLSTLSDPVQ------------LEVHIGWLLLQA----------PR----- 97
Query: 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGT 757
E + H V +L NGK + H I
Sbjct: 98 ----WVFKEEDPIHLRCH-SWKNTALHKVTYLQNGKGRKYFHHNSD--------FYIPKA 144
Query: 758 KIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKLVYSLF 799
++D+G Y CR S ++ + + S F
Sbjct: 145 TLKDSGSYFCRGLVGSK-NVSSETVQITITQGLAVSTISSFF 185
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 1e-04
Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 11/70 (15%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
DS +C + + +WFHN I + I DSGEY
Sbjct: 22 KDSVTLKCQGAY-SPEDQSTQWFHNESLISSQASS----------YFIDAATVDDSGEYR 70
Query: 379 CRAWNKYGED 388
C+ D
Sbjct: 71 CQTQLSTLSD 80
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 3e-10
Identities = 18/108 (16%), Positives = 31/108 (28%), Gaps = 16/108 (14%)
Query: 301 GQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGK-------PIFHKNRV 353
F S + G S C P +++W+ G+ ++ R+
Sbjct: 19 SHMAGFVQAPLSQQRW-VGGSVELHCEAV--GSPVPEIQWWFEGQGPNDICSQLWDGARL 75
Query: 354 KMVSDFGFVVMD------IAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
V I + D+G Y CRA N + +
Sbjct: 76 DRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPR 123
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 4e-10
Identities = 23/120 (19%), Positives = 35/120 (29%), Gaps = 13/120 (10%)
Query: 687 EDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPV---------GDQTMTVEFLYNGKPI 735
F G A PV L++G +
Sbjct: 17 RGSHMAGFVQAPLSQQ-RWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARL 75
Query: 736 EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKLV 795
+ H T H + I EDTG Y CRA+N + ++ V W +Q ++
Sbjct: 76 DRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPR-VKWVRAQAVVL 134
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 4e-10
Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 18/111 (16%)
Query: 491 PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLP--------- 540
+ F+ G S P ++W++ G+
Sbjct: 17 RGSHMAGFVQAPLSQQ-RWVGGSVELHCE---AVGSPVPEIQWWFEGQGPNDICSQLWDG 72
Query: 541 ----HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
H + T+H + I EE++G YECRA+N + + +
Sbjct: 73 ARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPR 123
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 54.3 bits (130), Expect = 6e-09
Identities = 20/107 (18%), Positives = 29/107 (27%), Gaps = 12/107 (11%)
Query: 198 EDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPV---------GDQTMTVEFLYNGKPI 246
F G A PV L++G +
Sbjct: 17 RGSHMAGFVQAPLSQQ-RWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARL 75
Query: 247 EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
+ H T H + I EDTG Y CRA+N + ++
Sbjct: 76 DRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAP 122
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 5e-07
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 13/73 (17%)
Query: 601 PEVEWFYNGKKLP-------------HGHRYRTFHDFGIVILDILYCYEENSGVYECRAT 647
PE++W++ G+ H + T+H + I EE++G YECRA+
Sbjct: 51 PEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRAS 110
Query: 648 NKYGSDVTKASLK 660
N + + +
Sbjct: 111 NDPDRNHLTRAPR 123
|
| >3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 5e-07
Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 18/111 (16%)
Query: 60 EETFAKPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPL--------- 109
F+ + +G + LH EA P P +I+W F G+
Sbjct: 16 PRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPV--P--EIQWWFEGQGPNDICSQLWD 71
Query: 110 ----ELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ T T+ + + + D G Y CRA N +
Sbjct: 72 GARLDRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAP 122
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 3e-10
Identities = 12/99 (12%), Positives = 27/99 (27%), Gaps = 12/99 (12%)
Query: 296 VDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKM 355
S + + + + G + C P ++ W +G P+ +
Sbjct: 3 SGSSGLEEVQLVVEPEGGA-VAPGGTVTLTCE--VPAQPSPQIHWMKDGVPLPLPPSPVL 59
Query: 356 VSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
+ + + D G Y C A + +
Sbjct: 60 I---------LPEIGPQDQGTYSCVATHSSHGPQESRAV 89
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-08
Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 12/100 (12%)
Query: 57 SGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK 116
S + +V + + + L +V P+ +I W+ +G PL L
Sbjct: 2 SSGSSGLEEVQLVVEPEG-GAVAPGGTVTLTCEVPA--QPSPQIHWMKDGVPLPLPPSP- 57
Query: 117 TTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L L E+ +DQG Y+C A + + S +
Sbjct: 58 --------VLILPEIGPQDQGTYSCVATHSSHGPQESRAV 89
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 3e-08
Identities = 15/99 (15%), Positives = 32/99 (32%), Gaps = 12/99 (12%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
Q E + + ++ G + + ++ +G P+
Sbjct: 10 EVQLVVEPEGGA-VAPGGTVTLTCE--VPAQPSPQIHWMKDGVPLPLPPS---------P 57
Query: 751 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSP 789
VL + +D G Y+C AT+ + S + + P
Sbjct: 58 VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEP 96
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-07
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 14/99 (14%)
Query: 489 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRT 547
+ E + + + + G + V P + W +G LP
Sbjct: 4 GSSGLEEVQLVVEPEGGA-VAPGGTVTLTCE---VPAQPSPQIHWMKDGVPLPLPPSP-- 57
Query: 548 FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+L + ++ G Y C AT+ ++
Sbjct: 58 -------VLILPEIGPQDQGTYSCVATHSSHGPQESRAV 89
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 6e-07
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 12/93 (12%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
Q E + + ++ G + + ++ +G P+
Sbjct: 10 EVQLVVEPEGGA-VAPGGTVTLTCE--VPAQPSPQIHWMKDGVPLPLPPS---------P 57
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
VL + +D G Y+C AT+ + S +
Sbjct: 58 VLILPEIGPQDQGTYSCVATHSSHGPQESRAVS 90
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 2e-04
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 9/59 (15%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
P++ W +G LP +L + ++ G Y C AT+ ++
Sbjct: 40 PQIHWMKDGVPLPLPPSP---------VLILPEIGPQDQGTYSCVATHSSHGPQESRAV 89
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 3e-10
Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 15/110 (13%)
Query: 490 APVAEAPKFITQISDVTQLKEGQSAHFEARLT---PVTDPDLVVEWF---------YNGK 537
+ + FI + T +K G+ F A++ + P ++WF GK
Sbjct: 2 SSGSSGILFIEKPQGGT-VKVGEDITFIAKVKAEDLLRKPT--IKWFKGKWMDLASKAGK 58
Query: 538 KLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L + + I+ + +G Y C T K D L+
Sbjct: 59 HLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 108
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 5e-09
Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 16/110 (14%)
Query: 299 SKGQP-PKFTSHIKSLEGLKDGDSAHFECTLT---PVNDPELKVEWFHN---------GK 345
S G F + +K G+ F + + P ++WF GK
Sbjct: 2 SSGSSGILFIEKPQGGT-VKVGEDITFIAKVKAEDLLRKPT--IKWFKGKWMDLASKAGK 58
Query: 346 PIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ K + S M I + + +G Y C K D ++
Sbjct: 59 HLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 108
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 7e-09
Identities = 24/122 (19%), Positives = 36/122 (29%), Gaps = 12/122 (9%)
Query: 197 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASL--IPVGDQ--------TMTVEFLYNGKPI 246
S F + Q + GE F A + + + GK +
Sbjct: 2 SSGSSGILFIEKPQGGTV-KVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHL 60
Query: 247 EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKF 306
+ ++I+ K G Y C T K S +LE V +S G P
Sbjct: 61 QLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE-VHESTGTTPNI 119
Query: 307 TS 308
S
Sbjct: 120 DS 121
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 9e-08
Identities = 21/118 (17%), Positives = 33/118 (27%), Gaps = 13/118 (11%)
Query: 686 SEDGRPPQFTSEFQHLSNLSEGEIAHFEASL--IPVGDQ--------TMTVEFLYNGKPI 735
S F + Q + GE F A + + + GK +
Sbjct: 2 SSGSSGILFIEKPQGGTV-KVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHL 60
Query: 736 EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTK 793
+ ++I+ K G Y C T K S +LE V + T
Sbjct: 61 QLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE--VHESTGTT 116
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 2e-06
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 9/69 (13%)
Query: 601 PEVEWF---------YNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG 651
P ++WF GK L + + I+ + +G Y C T K
Sbjct: 40 PTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDK 99
Query: 652 SDVTKASLK 660
D L+
Sbjct: 100 FDSCSFDLE 108
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126 | Back alignment and structure |
|---|
Score = 40.4 bits (94), Expect = 3e-04
Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 15/108 (13%)
Query: 61 ETFAKPVFIVPLKPEFKLGEAQPLHLEAQVE---PKNDPNLKIEW---------IFNGKP 108
+ +FI + + + + A+V+ P I+W GK
Sbjct: 3 SGSSGILFIEKPQG-GTVKVGEDITFIAKVKAEDLLRKP--TIKWFKGKWMDLASKAGKH 59
Query: 109 LELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L+L F+ + + + + D G Y C S +
Sbjct: 60 LQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDL 107
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 60.3 bits (145), Expect = 4e-10
Identities = 31/197 (15%), Positives = 56/197 (28%), Gaps = 39/197 (19%)
Query: 229 PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV-----LEILGTKIEDTGVYTCRATNK 283
D + V F Y+ + H G L + + D G+YTC K
Sbjct: 47 DKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLK 106
Query: 284 WGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPEL-KVEWFH 342
+ +E + +P ++ GD+ C++ + + KV W
Sbjct: 107 NESMVMKKPVE-LWVLPEEPRDLR--------VRVGDTTQMRCSIQSTEEKRVTKVNWMF 157
Query: 343 NGKP----------------------IFHKNRVKMVSDF--GFVVMDIAYVQSHDSGEYV 378
+ +NRV + D + + V+ D G Y
Sbjct: 158 SSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYT 217
Query: 379 CRAWNKYGEDFTRATIK 395
C + E +
Sbjct: 218 CSIYVGKLESRKTIVLH 234
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 55.3 bits (132), Expect = 2e-08
Identities = 37/220 (16%), Positives = 80/220 (36%), Gaps = 46/220 (20%)
Query: 598 SQLPEVEWFYNGKKLPHGHRYR---------TFHDFGIVILDILYCYEENSGVYECRATN 648
V ++Y+ +P G R++ +D +++ D+ + + G+Y C
Sbjct: 50 DASEYVLFYYSNLSVPTG-RFQNRSHLVGDTFHNDGSLLLQDVQ---KADEGIYTCEIRL 105
Query: 649 KYGSDVTKASLKCVSKTNLILESQLPELRRQPAG--------VPDSEDGRPPQFTSEFQH 700
K S V K ++ L + + P R G + +E+ R + F
Sbjct: 106 KNESMVMKKPVE------LWVLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSS 159
Query: 701 LSNLSEGEIAHFEASLIPVGDQTMT-----VEFLYNGKPIEASHRIRTVHAFGMVVLEIL 755
S+ E + +++++ Q++ V+ + + S +++TV
Sbjct: 160 GSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKE--------- 210
Query: 756 GTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTKLV 795
D G+YTC ++ ++ L VV Q +
Sbjct: 211 ----SDQGIYTCSIYVGKLESRKTIVLH-VVQDEFQRTIS 245
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 9e-08
Identities = 30/244 (12%), Positives = 64/244 (26%), Gaps = 84/244 (34%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTD-PDLVVEW---------------FYNGKKL 539
P + + G+S + + V+W +Y+ +
Sbjct: 6 PGLTVSSPQLR-VHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSV 64
Query: 540 PHGHRYR---------TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK------- 583
P G R++ +D +++ D+ + + G+Y C K S V K
Sbjct: 65 PTG-RFQNRSHLVGDTFHNDGSLLLQDVQ---KADEGIYTCEIRLKNESMVMKKPVELWV 120
Query: 584 ---------------ASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFH------ 622
++C ++ E ++ +V W ++ ++
Sbjct: 121 LPEEPRDLRVRVGDTTQMRCSIQST--EEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSG 178
Query: 623 ---------------------DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 661
D I + + E + G+Y C L
Sbjct: 179 KFQSLGRFRNRVDLTGDISRNDGSIKLQTV---KESDQGIYTCSIYVGKLESRKTIVLHV 235
Query: 662 VSKT 665
V
Sbjct: 236 VQDE 239
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 1e-06
Identities = 33/232 (14%), Positives = 70/232 (30%), Gaps = 50/232 (21%)
Query: 92 PKNDPNLKIEWIFNGKPLEL--------------GSRFKTTADF------GFVTLDLTEV 131
+ +++W+F+ + RF+ + +L L +V
Sbjct: 32 TEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSLLLQDV 91
Query: 132 YDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQP 191
D+GIYTC +E P+ L +R
Sbjct: 92 QKADEGIYTCEIRLKNESMVMKKP---------VELWVLPEEPRDLRVRVGDTTQMRCSI 142
Query: 192 AGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMT-----VEFLYNGKPI 246
+ R + F S+ E + +++++ Q++ V+ +
Sbjct: 143 QSTEEK---RVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRN 199
Query: 247 EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
+ S +++TV D G+YTC ++ ++ L V
Sbjct: 200 DGSIKLQTVKE-------------SDQGIYTCSIYVGKLESRKTIVLHVVQD 238
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 7e-10
Identities = 24/166 (14%), Positives = 47/166 (28%), Gaps = 28/166 (16%)
Query: 232 DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 291
+ E + +S + R L I D Y + N + +
Sbjct: 31 QKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFFL 90
Query: 292 N-LECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHK 350
LE V K P + +A C + D ELK + + +
Sbjct: 91 YVLEMVSK-----PMIY---------WECSNATLTCEVLEGTDVELK--LYQGKEHLRSL 134
Query: 351 NRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKC 396
++Y ++ + C+A N+ ++ + C
Sbjct: 135 R-----------QKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 169
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171 | Back alignment and structure |
|---|
Score = 51.1 bits (122), Expect = 2e-07
Identities = 25/176 (14%), Positives = 48/176 (27%), Gaps = 39/176 (22%)
Query: 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKL----------PHGHRYRTFHDFGIVILDIL 559
+ F P P V W K+ + R + D L I
Sbjct: 9 VYGNVTFH---VPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIY 65
Query: 560 YCYEENSGVYECRATNKYGSD---------VTKASLKCVSKTNLIL-----ESQLPEVEW 605
+ YE + N + V+K + +N L E E++
Sbjct: 66 NLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIY-WECSNATLTCEVLEGTDVELKL 124
Query: 606 FYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 661
+ + L + + Y + ++C+A N+ + + C
Sbjct: 125 YQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 169
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 1e-09
Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 15/118 (12%)
Query: 285 GQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNG 344
G + S L V PP +S + G+ +C + P+ ++ W
Sbjct: 1 GSSGSSGTLT-V----NGPPIISST--QTQHALHGEKGQIKCFIRSTPPPD-RIAWSWKE 52
Query: 345 KPIF----HKNRVKMVSDFGFVVMD--IAYVQSHD-SGEYVCRAWNKYGEDFTRATIK 395
+ + V+ +S V+ I+ + D Y C AWN +G D +K
Sbjct: 53 NVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 110
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 9e-07
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 10/101 (9%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK------T 117
P+ GE + + P P+ +I W + LE G+ + +
Sbjct: 13 GPPIISSTQTQHALHGEKGQIKCFIRSTPP--PD-RIAWSWKENVLESGTSGRYTVETIS 69
Query: 118 TADFGFVTLDLTEVYDRD-QGIYTCRAWNLAGETFTSTTIY 157
T + TL ++ + D Q IY C AWN G +
Sbjct: 70 TEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 110
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 1e-06
Identities = 21/100 (21%), Positives = 31/100 (31%), Gaps = 9/100 (9%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR------TF 548
P I+ G+ + + PD + W + L G R +
Sbjct: 13 GPPIISSTQTQH-ALHGEKGQIKCFIRSTPPPDRIA-WSWKENVLESGTSGRYTVETIST 70
Query: 549 HDFGIVILDILYCYEE-NSGVYECRATNKYGSDVTKASLK 587
+ I L I +Y C A N +GSD LK
Sbjct: 71 EEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 110
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-06
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 14/103 (13%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEAS----HRIRT 254
PP +S + GE P + + + +E+ + + T
Sbjct: 13 GPPIISSTQTQHA--LHGEKGQIKCFIRSTP---PPDRIAWSWKENVLESGTSGRYTVET 67
Query: 255 VHAFGMV--VLEILGTKIEDTG-VYTCRATNKWGQAEISVNLE 294
+ V L I D +Y C A N +G + L+
Sbjct: 68 ISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 110
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-06
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 14/103 (13%)
Query: 690 RPPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVEFLYNGKPIEAS----HRIRT 743
PP +S + GE P + + + +E+ + + T
Sbjct: 13 GPPIISSTQTQHA--LHGEKGQIKCFIRSTP---PPDRIAWSWKENVLESGTSGRYTVET 67
Query: 744 VHAFGMV--VLEILGTKIEDTG-VYTCRATNKWGQAEISVNLE 783
+ V L I D +Y C A N +G + L+
Sbjct: 68 ISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 110
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 2e-04
Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 7/67 (10%)
Query: 601 PEVEWFYNGKKLPHGHRYR------TFHDFGIVILDILYCYEE-NSGVYECRATNKYGSD 653
+ W + L G R + + I L I +Y C A N +GSD
Sbjct: 44 DRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSD 103
Query: 654 VTKASLK 660
LK
Sbjct: 104 TEIIRLK 110
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 1e-09
Identities = 22/121 (18%), Positives = 37/121 (30%), Gaps = 15/121 (12%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSA 322
L++ K+EDTG Y + + K S L + Q S
Sbjct: 72 LQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILR----QLRNIQVTNHSQLFQNMTCEL 127
Query: 323 HFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAW 382
H C++ D + W G + + + + D + +Y C A
Sbjct: 128 HLTCSVED-ADDNVSFRWEALGNTLSSQPNLTVSWD----------PRISSEQDYTCIAE 176
Query: 383 N 383
N
Sbjct: 177 N 177
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 1e-05
Identities = 23/184 (12%), Positives = 45/184 (24%), Gaps = 55/184 (29%)
Query: 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKLP------------------HGHRYRTFHDF 551
G+S + + W +N L G R +
Sbjct: 12 LGESVTLPLEFPAGEKVNFIT-WLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSY 70
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLK---CVSKTNLILESQL-------- 600
+ + ++ E++G Y + + K + ++ +L+ + + SQL
Sbjct: 71 SLQLSNL---KMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCEL 127
Query: 601 ------------PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATN 648
W G L D + Y C A N
Sbjct: 128 HLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPR----------ISSEQDYTCIAEN 177
Query: 649 KYGS 652
+
Sbjct: 178 AVSN 181
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 2e-04
Identities = 31/223 (13%), Positives = 60/223 (26%), Gaps = 65/223 (29%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLP------------------HGHRYR 619
G VT L ++ + W +N L G R
Sbjct: 13 GESVT---LPL----EFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLN 65
Query: 620 TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQ 679
+ + + ++ E++G Y + + K + ++ +L+ +
Sbjct: 66 FTQSYSLQLSNL---KMEDTGSYRAQISTKTSAKLSSYTLRIL----------------- 105
Query: 680 PAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH 739
R Q T+ Q N H S + D ++ + G + +
Sbjct: 106 -------RQLRNIQVTNHSQLFQN--MTCELHLTCS-VEDADDNVSFRWEALGNTLSSQP 155
Query: 740 RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+ +I YTC A N SV+
Sbjct: 156 NLTV----------SWDPRISSEQDYTCIAENAVSNLSFSVSA 188
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 3e-09
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI-----FHKNRVKMVS 357
PP+ H L K G+ A C P +EW+ G+ + ++ ++
Sbjct: 9 PPRIVEHPSDLIVSK-GEPATLNCKAEG--RPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 358 DFGFVVMDI--AYVQSHDSGEYVCRAWNKYGEDFTR 391
+ I D G YVC A N GE +
Sbjct: 66 SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSH 101
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 52.5 bits (126), Expect = 1e-08
Identities = 22/109 (20%), Positives = 40/109 (36%), Gaps = 11/109 (10%)
Query: 487 AQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLP-----H 541
P+ + SD+ + +G+ A + P +EW+ G+++
Sbjct: 1 GSLRQEDFPPRIVEHPSDLI-VSKGEPATLNCKAEG--RPTPTIEWYKGGERVETDKDDP 57
Query: 542 GHRYRTFHDFGIVILDILYCY--EENSGVYECRATNKYGSDVTK-ASLK 587
+ L I++ + GVY C A N G V+ ASL+
Sbjct: 58 RSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLE 106
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 1e-06
Identities = 28/126 (22%), Positives = 41/126 (32%), Gaps = 28/126 (22%)
Query: 198 EDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTV 255
++ PP+ L +S+GE A A G T T+E+ G+ +E
Sbjct: 5 QEDFPPRIVEHPSDLI-VSKGEPATLNCKAE----GRPTPTIEWYKGGERVETDKDDPRS 59
Query: 256 HAF-----GMVVLEIL--GTKIEDTGVYTCRATNKWGQ-----AEISVNLECVDKSKGQP 303
H + L I+ D GVY C A N G+ A + V
Sbjct: 60 HRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA---------AA 110
Query: 304 PKFTSH 309
H
Sbjct: 111 AHHHHH 116
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-06
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 601 PEVEWFYNGKKLP-----HGHRYRTFHDFGIVILDILYCY--EENSGVYECRATNKYGSD 653
P +EW+ G+++ + L I++ + GVY C A N G
Sbjct: 39 PTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEA 98
Query: 654 VTK-ASLK 660
V+ ASL+
Sbjct: 99 VSHDASLE 106
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 687 EDGRPPQFTSEFQHLSNLSEGEIAHFE--ASLIPVGDQTMTVEFLYNGKPIEASHRIRTV 744
++ PP+ L +S+GE A A G T T+E+ G+ +E
Sbjct: 5 QEDFPPRIVEHPSDLI-VSKGEPATLNCKAE----GRPTPTIEWYKGGERVETDKDDPRS 59
Query: 745 HAF-----GMVVLEIL--GTKIEDTGVYTCRATNKWGQA 776
H + L I+ D GVY C A N G+A
Sbjct: 60 HRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEA 98
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 7e-05
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 10/102 (9%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPL-----ELGSR 114
+ P + + + + +P L + E P IEW G+ + + S
Sbjct: 4 RQEDFPPRIVEHPS-DLIVSKGEPATLNCKAEG--RPTPTIEWYKGGERVETDKDDPRSH 60
Query: 115 FKTTADFGFVTLDLTEVYDR--DQGIYTCRAWNLAGETFTST 154
L + D+G+Y C A N GE +
Sbjct: 61 RMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHD 102
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180 | Back alignment and structure |
|---|
Score = 55.7 bits (134), Expect = 5e-09
Identities = 28/170 (16%), Positives = 55/170 (32%), Gaps = 31/170 (18%)
Query: 231 GDQTMTVEFLYNGKPIEA----SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 286
+E+ NGK R+ G L I ED G Y R + +
Sbjct: 37 TTNQKILEYFPNGKKTVFESVFKDRVDLDKTNG--ALRIYNVSKEDRGDYYMRMLH-ETE 93
Query: 287 AEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKP 346
+ + +E V + +P I + +A C + D ELK + +
Sbjct: 94 DQWKITME-VYEMVSKP-----MIYW-----ECSNATLTCEVLEGTDVELK--LYQGKEH 140
Query: 347 IFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKC 396
+ + ++Y ++ + C+A N+ ++ + C
Sbjct: 141 LRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 179
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 3e-06
Identities = 30/190 (15%), Positives = 57/190 (30%), Gaps = 41/190 (21%)
Query: 501 QISDVTQLK--EGQSAHFEARLTPVTDPD----------LVVEWFYNGKKLPHGHRY--R 546
Q V + G + P+ ++E+F NGKK + R
Sbjct: 2 QDQSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDR 61
Query: 547 TFHDFGIVILDILYCYEENSGVYECRATNKYGSD----------VTKASLKCVSKTNLIL 596
D L I +E+ G Y R ++ V+K + +N L
Sbjct: 62 VDLDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIY-WECSNATL 120
Query: 597 -----ESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG 651
E E++ + + L + + Y + ++C+A N+
Sbjct: 121 TCEVLEGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVS 169
Query: 652 SDVTKASLKC 661
+ + C
Sbjct: 170 QESEMEVVNC 179
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 3e-04
Identities = 13/113 (11%), Positives = 34/113 (30%), Gaps = 17/113 (15%)
Query: 49 AGKYQRQ---PSGPEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN 105
G Y + + + V+ + KP E L +V +++++
Sbjct: 81 RGDYYMRMLHETEDQWKITMEVYEMVSKPMIYW-ECSNATLTCEVL--EGTDVELKLYQG 137
Query: 106 GKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYC 158
+ L + ++ + + + C+A N + + C
Sbjct: 138 KEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 179
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 9e-09
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 9/96 (9%)
Query: 304 PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFH---KNRVKMVSDFG 360
P+ T ++ + G F C+ +D + W + + + +N + + G
Sbjct: 11 PQITVQPETQSAIX-GSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGG 69
Query: 361 FVVMD-----IAYVQSHDSGEYVCRAWNKYGEDFTR 391
++ + V+ G Y C N +G ++
Sbjct: 70 ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 4e-05
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 10/100 (10%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFH------ 549
P+ Q + + G F +D + W + + L H
Sbjct: 11 PQITVQPETQSAIX-GSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGG 69
Query: 550 --DFGIVILDILYCYEENSGVYECRATNKYGSDVTK-ASL 586
IL + + G Y+C +N +GS + A L
Sbjct: 70 ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXL 109
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 3e-04
Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 11/102 (10%)
Query: 61 ETFAKPVFIVPLKPEFKLGEA-QPLHLEAQVEPKNDPNLKIEWIFNGKPL---ELGSRFK 116
+ F P V PE + + +D + W + + L E+ +
Sbjct: 6 DDFPXPQITVQ--PETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAH 63
Query: 117 TTADFGFV-----TLDLTEVYDRDQGIYTCRAWNLAGETFTS 153
A G + L L V +G Y C N G +++
Sbjct: 64 LRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSV 105
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 1e-08
Identities = 18/99 (18%), Positives = 26/99 (26%), Gaps = 8/99 (8%)
Query: 316 LKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDF--------GFVVMDIA 367
L G+ CT + + W + HK V + I
Sbjct: 20 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 79
Query: 368 YVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDS 406
V D G Y C A + ++ K V S
Sbjct: 80 GVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGS 118
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 8e-07
Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 11/100 (11%)
Query: 66 PVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK-------- 116
V + P E +GE L L + + + W + +
Sbjct: 9 DVVLSPSHGIELSVGE--KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 66
Query: 117 TTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ TL + V DQG+YTC A + ST +
Sbjct: 67 SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFV 106
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 3e-06
Identities = 15/107 (14%), Positives = 29/107 (27%), Gaps = 8/107 (7%)
Query: 489 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR-- 546
A P + S +L G+ + + W Y K H
Sbjct: 1 ADPGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRD 60
Query: 547 ------TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
+ + L I + G+Y C A++ + ++
Sbjct: 61 LKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 107
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 39.7 bits (92), Expect = 4e-04
Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 8/92 (8%)
Query: 215 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR--------TVHAFGMVVLEIL 266
LS GE + + + + Y + + + + L I
Sbjct: 20 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 79
Query: 267 GTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
G D G+YTC A++ + S + +K
Sbjct: 80 GVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK 111
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122 | Back alignment and structure |
|---|
Score = 39.3 bits (91), Expect = 7e-04
Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 8/87 (9%)
Query: 704 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR--------TVHAFGMVVLEIL 755
LS GE + + + + Y + + + + L I
Sbjct: 20 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 79
Query: 756 GTKIEDTGVYTCRATNKWGQAEISVNL 782
G D G+YTC A++ + S +
Sbjct: 80 GVTRSDQGLYTCAASSGLMTKKNSTFV 106
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 6e-08
Identities = 22/140 (15%), Positives = 41/140 (29%), Gaps = 14/140 (10%)
Query: 259 GMVVLEILGTKIEDTGVYTCRATNK-WGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLK 317
G L+I K++D GVY C + I+V + P + + L
Sbjct: 78 GNAALQITDVKLQDAGVYRCMISYGGADYKRITVKV--------NAPYNKINQRILVVDP 129
Query: 318 DGDSAHFECTLTPVNDPELKVEWFHNGKPIF---HKNRVKMVSDFGFVVMDIAYVQSHDS 374
C P+ +V W + + + F V + + +
Sbjct: 130 VTSEHELTCQAE--GYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTN 187
Query: 375 GEYVCRAWNKYGEDFTRATI 394
+ C E+ A +
Sbjct: 188 EIFYCTFRRLDPEENHTAEL 207
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 8e-08
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH-NGKPIFH--KNRVKMVSD 358
+ + + +G + F C DP + W + R+ + D
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRAD--GDPPPAILWLSPRKHLVSAKSNGRLTVFPD 440
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
G +++ Y Q D+G Y+C A N G D A +
Sbjct: 441 -G--TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 4e-05
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFY-NGKKLPHG--HRYRTFHD 550
+ + + + EG + F R DP + W + R F D
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRAD--GDPPPAILWLSPRKHLVSAKSNGRLTVFPD 440
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
G L++ Y +++G Y C A N G+D A L
Sbjct: 441 -GT--LEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 31/161 (19%), Positives = 48/161 (29%), Gaps = 31/161 (19%)
Query: 141 CR-AW---NLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPD 196
CR W F C+T E + + + +D + L P+
Sbjct: 336 CRLLWVFRRRWRLNFNRQQPTCATPEFVQGK-----------EFKDFPDVLL------PN 378
Query: 197 SEDGRPPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVE-FLYNGKPIEASHRIR 253
R + + EG F A GD + + A R
Sbjct: 379 YFTCRRARIRDRKAQQVFVDEGHTVQFVCRAD----GDPPPAILWLSPRKHLVSAKSNGR 434
Query: 254 T-VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
V G LE+ +++D G Y C A N G + +L
Sbjct: 435 LTVFPDGT--LEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 5e-05
Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 10/97 (10%)
Query: 690 RPPQFTSEFQHLSNLSEGEIAHF--EASLIPVGDQTMTVE-FLYNGKPIEASHRIRT-VH 745
R + + EG F A GD + + A R V
Sbjct: 383 RRARIRDRKAQQVFVDEGHTVQFVCRAD----GDPPPAILWLSPRKHLVSAKSNGRLTVF 438
Query: 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
G LE+ +++D G Y C A N G + +L
Sbjct: 439 PDGT--LEVRYAQVQDNGTYLCIAANAGGNDSMPAHL 473
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 10/116 (8%)
Query: 48 LAGKYQRQ---PSGPEE-TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWI 103
+ GK + P T + + + E + + + DP I W+
Sbjct: 363 VQGKEFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRAD--GDPPPAILWL 420
Query: 104 F-NGKPLELGSRFKTTADF-GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
+ S + T G TL++ +D G Y C A N G ++
Sbjct: 421 SPRKHLVSAKSNGRLTVFPDG--TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLH 474
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 9e-08
Identities = 18/105 (17%), Positives = 30/105 (28%), Gaps = 15/105 (14%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLT---PVNDPELKVEWFHN---------GKPIFHK 350
F + E + G S F + + P V+WF G+ +
Sbjct: 4 IGLFVMRPQDGE-VTVGGSITFSARVAGASLLKPPV--VKWFKGKWVDLSSKVGQHLQLH 60
Query: 351 NRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ S + I Q +G Y C K D + +
Sbjct: 61 DSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLT 105
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 1e-07
Identities = 10/53 (18%), Positives = 17/53 (32%)
Query: 242 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
G+ ++ + L I + TG Y C + K + NL
Sbjct: 53 VGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLT 105
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 1e-07
Identities = 10/53 (18%), Positives = 17/53 (32%)
Query: 731 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
G+ ++ + L I + TG Y C + K + NL
Sbjct: 53 VGQHLQLHDSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLT 105
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 4e-07
Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 15/105 (14%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLT---PVTDPDLVVEWFYN---------GKKLPHG 542
F+ + D + G S F AR+ + P V+WF G+ L
Sbjct: 4 IGLFVMRPQDGE-VTVGGSITFSARVAGASLLKPPV--VKWFKGKWVDLSSKVGQHLQLH 60
Query: 543 HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
Y + L I +G Y C + K D + +L
Sbjct: 61 DSYDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLT 105
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 7e-06
Identities = 17/92 (18%), Positives = 27/92 (29%), Gaps = 14/92 (15%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYN---------GKKLPHGHRYRTFHDFGIVI 628
G +T + + P V+WF G+ L Y +
Sbjct: 19 GGSIT---FSA--RVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFE 73
Query: 629 LDILYCYEENSGVYECRATNKYGSDVTKASLK 660
L I +G Y C + K D + +L
Sbjct: 74 LHITDAQPAFTGSYRCEVSTKDKFDCSNFNLT 105
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 3e-04
Identities = 14/102 (13%), Positives = 35/102 (34%), Gaps = 13/102 (12%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNL-KIEWIFNGKPLELGSR---------- 114
+F++ + ++ + A+V + ++W F GK ++L S+
Sbjct: 5 GLFVMRPQD-GEVTVGGSITFSARVAGASLLKPPVVKW-FKGKWVDLSSKVGQHLQLHDS 62
Query: 115 FKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ + L +T+ G Y C ++ +
Sbjct: 63 YDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNL 104
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 9e-08
Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 17/107 (15%)
Query: 292 NLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH-NGKPIFHK 350
C P L + G +A +C + V W NG + H
Sbjct: 336 YFTC------YAPVIVEPPADLNVTE-GMAAELKC---RASTSLTSVSWITPNGTVMTHG 385
Query: 351 ---NRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
R+ ++SD G ++ V D+G Y C N G AT+
Sbjct: 386 AYKVRIAVLSD-G--TLNFTNVTVQDTGMYTCMVSNSVGNTTASATL 429
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFY-NGKKLPHGH---RYRTFH 549
AP + +D+ + EG +A + R + V W NG + HG R
Sbjct: 340 YAPVIVEPPADLN-VTEGMAAELKCR---ASTSLTSVSWITPNGTVMTHGAYKVRIAVLS 395
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
D G L+ +++G+Y C +N G+ A+L
Sbjct: 396 D-GT--LNFTNVTVQDTGMYTCMVSNSVGNTTASATL 429
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 8e-05
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 69 IVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF-NGKPLELGS---RFKTTADFGFV 124
IV + + E L+ + + WI NG + G+ R +D G
Sbjct: 344 IVEPPADLNVTEGMAAELKCRAS---TSLTSVSWITPNGTVMTHGAYKVRIAVLSD-G-- 397
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
TL+ T V +D G+YTC N G T S T+
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGNTTASATL 429
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 9e-05
Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 10/122 (8%)
Query: 674 PELRRQP-AGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE-FLYN 731
P L+ + + + E N++EG A + +V N
Sbjct: 322 PNLKGRYIGELDQNYFTCYAPVIVEPPADLNVTEGMAAELKCR---ASTSLTSVSWITPN 378
Query: 732 GKPI-EASHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSP 789
G + ++++R V + G L ++DTG+YTC +N G S L V +
Sbjct: 379 GTVMTHGAYKVRIAVLSDGT--LNFTNVTVQDTGMYTCMVSNSVGNTTASATLN-VTGTH 435
Query: 790 SQ 791
Sbjct: 436 HH 437
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 10/107 (9%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE-FLYNGKPI-EASHRIR-TVHA 257
P L N++EG A + +V NG + ++++R V +
Sbjct: 340 YAPVIVEPPADL-NVTEGMAAELKCR---ASTSLTSVSWITPNGTVMTHGAYKVRIAVLS 395
Query: 258 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPP 304
G L ++DTG+YTC +N G S L V +
Sbjct: 396 DGT--LNFTNVTVQDTGMYTCMVSNSVGNTTASATLN-VTGTHHHHH 439
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 23/107 (21%), Positives = 40/107 (37%), Gaps = 18/107 (16%)
Query: 292 NLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH-NGKPIFHK 350
+ +C P + L + G A +C P V+W NG + H
Sbjct: 347 SFQC------SAPFIMDAPRDLNISE-GRMAELKCR----TPPMSSVKWLLPNGTVLSHA 395
Query: 351 ---NRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
R+ +++D G ++ ++V D+G Y C N G A +
Sbjct: 396 SRHPRISVLND-G--TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYL 439
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 5e-06
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 12/97 (12%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFY-NGKKLPHGH---RYRTFH 549
AP + D+ + EG+ A + R P++ V+W NG L H R +
Sbjct: 351 SAPFIMDAPRDLN-ISEGRMAELKCRTPPMSS----VKWLLPNGTVLSHASRHPRISVLN 405
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
D G L+ + ++GVY C TN G+ A L
Sbjct: 406 D-GT--LNFSHVLLSDTGVYTCMVTNVAGNSNASAYL 439
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 69 IVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF-NGKPLELGSRFKTTADFGFVTLD 127
I+ + + E + L+ + P + ++W+ NG L SR + TL+
Sbjct: 355 IMDAPRDLNISEGRMAELKCRTPPMSS----VKWLLPNGTVLSHASRHPRISVLNDGTLN 410
Query: 128 LTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ V D G+YTC N+AG + S +
Sbjct: 411 FSHVLLSDTGVYTCMVTNVAGNSNASAYL 439
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 14/80 (17%)
Query: 584 ASLKCVSKTNLILESQLPEVEWFY-NGKKLPHGH---RYRTFHDFGIVILDILYCYEENS 639
A LKC + + V+W NG L H R +D G L+ + ++
Sbjct: 370 AELKCRT-------PPMSSVKWLLPNGTVLSHASRHPRISVLND-GT--LNFSHVLLSDT 419
Query: 640 GVYECRATNKYGSDVTKASL 659
GVY C TN G+ A L
Sbjct: 420 GVYTCMVTNVAGNSNASAYL 439
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 8e-04
Identities = 28/122 (22%), Positives = 43/122 (35%), Gaps = 9/122 (7%)
Query: 674 PELRRQP-AGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE-FLYN 731
+R + V + F + N+SEG +A + +V+ L N
Sbjct: 333 MHMRGRYLVEVDQASFQCSAPFIMDAPRDLNISEGRMAELKCR----TPPMSSVKWLLPN 388
Query: 732 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQ 791
G + + R + L + DTGVYTC TN G + S L S +
Sbjct: 389 GTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYL---NVSTAG 445
Query: 792 TK 793
T
Sbjct: 446 TH 447
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 9e-04
Identities = 27/117 (23%), Positives = 40/117 (34%), Gaps = 9/117 (7%)
Query: 194 VPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE-FLYNGKPIEASHRI 252
V + F + N+SEG +A + +V+ L NG + + R
Sbjct: 343 VDQASFQCSAPFIMDAPRDLNISEGRMAELKCR----TPPMSSVKWLLPNGTVLSHASRH 398
Query: 253 RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSH 309
+ L + DTGVYTC TN G + S L V + H
Sbjct: 399 PRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLN-VSTA---GTHHHHH 451
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 1e-07
Identities = 25/156 (16%), Positives = 46/156 (29%), Gaps = 6/156 (3%)
Query: 232 DQTMTVEFLYNGKPIEASHRIRT-VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 290
++ M + + I ++ RT + + IL + D G Y C A
Sbjct: 35 EKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECVVLKYEKDAFKR 94
Query: 291 VNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHK 350
+L V S S S + + C+ + PE + W NG+ +
Sbjct: 95 EHLAEVTLSVKADFPTPSI--SDFEIPTSNIRRIICSTSGGF-PEPHLSWLENGEELNAI 151
Query: 351 NRVKMVSDFG--FVVMDIAYVQSHDSGEYVCRAWNK 384
N + V + ++C
Sbjct: 152 NTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYG 187
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 1e-04
Identities = 18/120 (15%), Positives = 30/120 (25%), Gaps = 20/120 (16%)
Query: 319 GDSAHFECTLTPVNDP--ELKVEWFHNGKPIFH------------KNRVKMVSDFGFVVM 364
+ A C + + ++ W K + KNR + +
Sbjct: 9 KEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDIT-NNLSI 67
Query: 365 DIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQ 424
I ++ D G Y C + F R V L I + E
Sbjct: 68 VILALRPSDEGTYECVVLKYEKDAFKREH-----LAEVTLSVKADFPTPSISDFEIPTSN 122
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 1e-07
Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 10/104 (9%)
Query: 191 PAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH 250
P P +P T E Q ++ G F + T+ + S
Sbjct: 2 PLAAPS----KPIMVTVEEQRSQSVRPGADVTFICT-AKSKSPAYTLVWTRLHNGKLPSR 56
Query: 251 RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+ +L I + D G Y C +N + + + L
Sbjct: 57 AMDFNG-----ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 1e-07
Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 10/104 (9%)
Query: 680 PAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH 739
P P +P T E Q ++ G F + T+ + S
Sbjct: 2 PLAAPS----KPIMVTVEEQRSQSVRPGADVTFICT-AKSKSPAYTLVWTRLHNGKLPSR 56
Query: 740 RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
+ +L I + D G Y C +N + + + L
Sbjct: 57 AMDFNG-----ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 95
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-07
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 6/93 (6%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
+P T + + ++ G F CT P + W +
Sbjct: 8 KPIMVTVEEQRSQSVRPGADVTFICTAKS-KSPAYTLVWTRLHNGKLPSRAMDFNG---- 62
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
++ I VQ D+G YVC N + D AT+
Sbjct: 63 -ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATL 94
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 8e-06
Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 6/100 (6%)
Query: 487 AQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR 546
A A ++ + ++ G F P + W
Sbjct: 1 APLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKS-KSPAYTLVWTRLHNGKLPSRA-- 57
Query: 547 TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
+ + I ++ ++G Y C +N + D A+L
Sbjct: 58 MDFNGILTIRNV---QPSDAGTYVCTGSNMFAMDQGTATL 94
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 2e-04
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 637
G+DVT C +K+ +S + W + + I ++
Sbjct: 25 GADVT---FICTAKS----KSPAYTLVWTRLHNGKLPSRA--MDFNGILTIRNV---QPS 72
Query: 638 NSGVYECRATNKYGSDVTKASL 659
++G Y C +N + D A+L
Sbjct: 73 DAGTYVCTGSNMFAMDQGTATL 94
|
| >1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 5e-04
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 7/94 (7%)
Query: 64 AKPVFIVPLKPEFK-LGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
+KP+ + + + + + + K+ P + W L SR
Sbjct: 7 SKPIMVTVEEQRSQSVRPGADVTFICTAKSKS-PAYTLVWTRLHNGK-LPSRAMDFNG-- 62
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L + V D G Y C N+ + T+
Sbjct: 63 --ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATL 94
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291 | Back alignment and structure |
|---|
Score = 47.9 bits (113), Expect = 6e-06
Identities = 16/137 (11%), Positives = 34/137 (24%), Gaps = 9/137 (6%)
Query: 253 RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKS 312
+ + G + +++ C + GQ+ L P+
Sbjct: 40 KELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVY-----WTPERVELAPL 94
Query: 313 LEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQS 371
G + C + L V K + + V ++ V + +
Sbjct: 95 PSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAE---VTTTVLVRRD 151
Query: 372 HDSGEYVCRAWNKYGED 388
H + CR
Sbjct: 152 HHGANFSCRTELDLRPQ 168
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214 | Back alignment and structure |
|---|
Score = 47.1 bits (111), Expect = 6e-06
Identities = 29/138 (21%), Positives = 43/138 (31%), Gaps = 18/138 (13%)
Query: 263 LEILGTKIEDTGVYTCRATN----KWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKD 318
L I ++EDTG Y R K+ + +NLE V +P I LE L+
Sbjct: 84 LSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLE-VTALIEKPD-----IHFLEPLES 137
Query: 319 GDSAHFECTL--TPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGE 376
G C+L + P L W N S+
Sbjct: 138 GRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLD-PETTRSSELTLTP-----RPEDHGTN 191
Query: 377 YVCRAWNKYGEDFTRATI 394
C+ + + T T+
Sbjct: 192 LTCQMKRQGAQVTTERTV 209
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} Length = 523 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 7e-06
Identities = 24/132 (18%), Positives = 43/132 (32%), Gaps = 11/132 (8%)
Query: 272 DTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLT-- 329
T Y C +K ++ +E + P F K + L + C +
Sbjct: 291 GTQTYICNVNHKPSNTKVDKRVEPLS----LPSVFLFPPKPKDTLMISRTPEVTCVVVDV 346
Query: 330 PVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV-----VMDIAYVQSHDSGEYVCRAWNK 384
DP++K W+ +G + + + V+ + + D EY C+ NK
Sbjct: 347 SHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNK 406
Query: 385 YGEDFTRATIKC 396
TI
Sbjct: 407 ALPAPIEKTISK 418
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 8e-06
Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 15/87 (17%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI----------FHKNR 352
+ + ++ ++ + DG+ A F L+ ++ WF NG+ + R
Sbjct: 8 TARLVAGLEDVQ-VYDGEDAVFSLDLST----IIQGTWFLNGEELKSNEPEGQVEPGALR 62
Query: 353 VKMVSDFGFVVMDIAYVQSHDSGEYVC 379
++ + + V+ DSG V
Sbjct: 63 YRIEQKGLQHRLILHAVKHQDSGALVG 89
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 2e-05
Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 18/108 (16%)
Query: 489 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL--------- 539
++ + + + + DV + +G+ A F L+ + WF NG++L
Sbjct: 2 SSGSSGTARLVAGLEDVQ-VYDGEDAVFSLDLST----IIQGTWFLNGEELKSNEPEGQV 56
Query: 540 -PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 586
P RYR L + ++SG A+L
Sbjct: 57 EPGALRYRIEQKGLQHRLILHAVKHQDSGAL---VGFSCPGVQDSAAL 101
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 9e-06
Identities = 19/132 (14%), Positives = 41/132 (31%), Gaps = 3/132 (2%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSA 322
L I V T+ ++++ V I+++E + G A
Sbjct: 125 LAISTFWPNFYQVIFEVITSGHQ-GYLAIDEVKVLGHPCTRTPHFLRIQNVE-VNAGQFA 182
Query: 323 HFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVM-DIAYVQSHDSGEYVCRA 381
F+C+ ++ +K+ S F+ ++ D+G+Y C
Sbjct: 183 TFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMI 242
Query: 382 WNKYGEDFTRAT 393
+ G +
Sbjct: 243 RTEGGVGISNYA 254
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 8e-04
Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 506 TQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL---PHGHRYRTFHDFGIVILDILYCY 562
++ GQ A F+ + + G + P T I +++
Sbjct: 174 VEVNAGQFATFQCS--AIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTT 231
Query: 563 EENSGVYECRATNKYGSDVTKASLKCV 589
+ ++G Y C + G ++ + V
Sbjct: 232 KRDAGKYRCMIRTEGGVGISNYAELVV 258
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 8e-04
Identities = 19/165 (11%), Positives = 39/165 (23%), Gaps = 36/165 (21%)
Query: 525 DPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584
P W +G +R L I + V T+ + +
Sbjct: 103 GPLGNPIWNISGDPTRTWNRAE---------LAISTFWPNFYQVIFEVITSGHQGYLAID 153
Query: 585 SLKCVSKTNLILESQL------------------------PEVEWFYNGKKL---PHGHR 617
+K + L + G + P
Sbjct: 154 EVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEI 213
Query: 618 YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 662
T I +++ + ++G Y C + G ++ + V
Sbjct: 214 KVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV 258
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 23/145 (15%), Positives = 44/145 (30%), Gaps = 26/145 (17%)
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKK 611
I LD C E E G +T ++C +K + +V + ++
Sbjct: 239 NIFSLDFFNCSEYK----ESAWEAHLGDTLT---IRCDTKQQ-----GMTKVWVSPSNEQ 286
Query: 612 LPHG--HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLIL 669
+ + + + + + E+ GVY C A + ++ LK V
Sbjct: 287 VLSQGSNGSVSVRNGDLFFKKVQ---VEDGGVYTCYAMGETFNETLSVELK-V------- 335
Query: 670 ESQLPELRRQPAGVPDSEDGRPPQF 694
++ PQF
Sbjct: 336 -YNFTLHGHHDTLNAAADPWSHPQF 359
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 7e-05
Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 11/81 (13%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD----IAYVQSHDS 374
GD+ C KV + + + + S+ V + VQ D
Sbjct: 261 GDTLTIRCDTKQ--QGMTKVWVSPSNEQVLSQG-----SNGSVSVRNGDLFFKKVQVEDG 313
Query: 375 GEYVCRAWNKYGEDFTRATIK 395
G Y C A + + +K
Sbjct: 314 GVYTCYAMGETFNETLSVELK 334
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 231 GDQTMTVEFLYNGKPIEA-SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 289
V + + + + G L ++ED GVYTC A + +
Sbjct: 272 QQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD--LFFKKVQVEDGGVYTCYAMGETFNETL 329
Query: 290 SVNL 293
SV L
Sbjct: 330 SVEL 333
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 720 GDQTMTVEFLYNGKPIEA-SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 778
V + + + + G L ++ED GVYTC A + +
Sbjct: 272 QQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD--LFFKKVQVEDGGVYTCYAMGETFNETL 329
Query: 779 SVNL 782
SV L
Sbjct: 330 SVEL 333
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 1e-05
Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 17/140 (12%)
Query: 263 LEILGTKIEDTGVYTCRA-TNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDS 321
L + ++ D Y C G AE + L +K + + + + +L ++D
Sbjct: 79 LVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVF--AKPEATEVSPNKGTLSVMEDSAQ 136
Query: 322 AHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD-------------IAY 368
C N P K+ W+ NG+ + + + +
Sbjct: 137 EIATCNSRNGN-PAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRL 195
Query: 369 VQSHDSGEYVCRAWNKYGED 388
+ + C A E
Sbjct: 196 RKDDRDASFHCAAHYSLPEG 215
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 1e-05
Identities = 11/89 (12%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 304 PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVV 363
T+H +++ +++G + +C + ++W N ++ + + +
Sbjct: 2 GSLTNHTETIT-VEEGQTLTLKCVTS--LRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQL 58
Query: 364 MD---------IAYVQSHDSGEYVCRAWN 383
+ + V D G Y C ++
Sbjct: 59 LHHSANQLSITVPNVTLQDEGVYKCLHYS 87
|
| >3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124 | Back alignment and structure |
|---|
Score = 40.0 bits (93), Expect = 4e-04
Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 240 LYNGKPIEASHRIRTVH-AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
N P+ + + + +H + + + + ++D GVY C + V + +
Sbjct: 44 FLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSDSVS-TKEVKVIVLAT 102
Query: 299 SKGQPPKFTSHIKSLE 314
KG+ ++ SH + LE
Sbjct: 103 MKGEFCRYPSHWRPLE 118
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 1e-05
Identities = 22/138 (15%), Positives = 40/138 (28%), Gaps = 11/138 (7%)
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKD 318
G L I D+G Y C + + V L + S +
Sbjct: 81 GKAALRIHNVTASDSGKYLCYFQDGDFYEKALVEL--------KVAALGSDLHVDVKGYK 132
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG--FVVMDIAYVQSHDSGE 376
H EC + P+ +++W +N +V+D + V ++
Sbjct: 133 DGGIHLECR-STGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEG 191
Query: 377 YVCRAWNKYGEDFTRATI 394
C + A+I
Sbjct: 192 VSCTIRSSLLGLEKTASI 209
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 4e-04
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 21/87 (24%)
Query: 319 GDSAHFECTLTPVNDPE-LKVEWFHNGKPIF-----------------HKNRVKMVSDF- 359
G+ A C L P E ++++W + ++ R ++ D
Sbjct: 19 GEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGI 78
Query: 360 --GFVVMDIAYVQSHDSGEYVCRAWNK 384
G + I V + DSG+Y+C +
Sbjct: 79 TAGKAALRIHNVTASDSGKYLCYFQDG 105
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 4e-05
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD---------IAYV 369
G +A C + + ++W + + + + K + D ++ ++ V
Sbjct: 21 GGTAILTCRVD--QNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDV 78
Query: 370 QSHDSGEYVC 379
D G+Y C
Sbjct: 79 SLSDEGQYTC 88
|
| >3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 8e-05
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 17/90 (18%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPI--FH-----------KNRVKMVSDFGFVVMD 365
G S +C L+ +V W + + + K+RV G +
Sbjct: 18 GGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQS 77
Query: 366 IAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ +D+GEY C ++ Y + I
Sbjct: 78 ---LTVNDTGEYFCI-YHTYPDGTYTGRIF 103
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 14/85 (16%), Positives = 24/85 (28%)
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSA 322
+ I D G Y C K + + S P +
Sbjct: 76 ISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTV 135
Query: 323 HFECTLTPVNDPELKVEWFHNGKPI 347
F C + ++ ++WF NG +
Sbjct: 136 SFTCESHGFSPRDITLKWFKNGNEL 160
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 9/77 (11%), Positives = 24/77 (31%), Gaps = 3/77 (3%)
Query: 271 EDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTP 330
+ C + Q + + S+ T + + + ++ + + C +
Sbjct: 190 DVHSQVICEVAHVTLQGDPLR--GTANLSETIRVPPTLEV-TQQPVRAENQVNVTCQVRK 246
Query: 331 VNDPELKVEWFHNGKPI 347
L++ W NG
Sbjct: 247 FYPQRLQLTWLENGNVS 263
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 3e-04
Identities = 79/469 (16%), Positives = 130/469 (27%), Gaps = 188/469 (40%)
Query: 37 GLEKVQE-VEHALAGKYQ----------RQPSGPEETFAK---------PVFI---VP-L 72
E VQ+ VE L Y+ RQPS + + VF V L
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF-NGKPLELGSRFKT--TADFGFVTLDLT 129
+P KL +A L LE + + +G GS KT D V L
Sbjct: 135 QPYLKLRQA--L-LELRPAK---------NVLIDGVL---GSG-KTWVALD---VCLSYK 175
Query: 130 EVYDRDQGIYTCRAW-NLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLR 188
D I+ W NL C++ E++ LE +Q L +
Sbjct: 176 VQCKMDFKIF----WLNLK---------NCNSPETV------------LEMLQKLLYQID 210
Query: 189 RQPAGVPDSEDGRPPQFTSEFQH-----------------LSNLSEGEIA---------- 221
D Q L N+ +
Sbjct: 211 PNWTSRSDHSS-NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269
Query: 222 -----------------------HFEASLIPVGDQTMTV--EFLYNGKPIEASHRIRTVH 256
H +L P D+ ++ ++L + +P + + T +
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTP--DEVKSLLLKYL-DCRPQDLPREVLTTN 326
Query: 257 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIK-SLEG 315
L I+ I D N W VN + K T+ I+ SL
Sbjct: 327 PR---RLSIIAESIRD---GLATWDN-WKH----VNCD----------KLTTIIESSLNV 365
Query: 316 LKDGD-SAHFE-CTLTP--VNDPE--LKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYV 369
L+ + F+ ++ P + P L + WF ++ VM +
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF------------DVIKS---DVMVVV-N 409
Query: 370 QSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIREL 418
+ H K ++ T + + S+ E ++
Sbjct: 410 KLHKYS-----LVEKQPKEST-----------ISIPSIYLELKVKLENE 442
|
| >1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 4e-04
Identities = 17/97 (17%), Positives = 36/97 (37%), Gaps = 23/97 (23%)
Query: 319 GDSAHFECTLTPVNDPE-LKVEWFHNG--KPIF---------------HKNRVKMVSD-- 358
GD A C ++P + ++V W+ + + + ++ R +++ +
Sbjct: 21 GDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESI 80
Query: 359 -FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
G V + I V+ D G Y C + A +
Sbjct: 81 GEGKVALRIQNVRFSDEGGYTCFF--RDHSYQEEAAV 115
|
| >1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* Length = 457 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 5e-04
Identities = 36/262 (13%), Positives = 71/262 (27%), Gaps = 29/262 (11%)
Query: 137 GIYTCRAW-NLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVP 195
G+Y+ + + + + T C H ++K E + P
Sbjct: 188 GLYSLSSVVTVPSSSLGTQTYIC--------NVNHKPSNTKVDKK--AEPKSCDKTHTCP 237
Query: 196 DSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLI------PVGDQTMTVEFLYNGKPIEAS 249
S F + + + D + + +G + +
Sbjct: 238 PCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNA 297
Query: 250 HRIRTVHAFG-----MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPP 304
+ + VL +L + Y C+ +NK A I + +P
Sbjct: 298 KTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQ 357
Query: 305 KFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG--FV 362
+T + + C + ++ VEW NG+P + V D F
Sbjct: 358 VYT--LPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFF 415
Query: 363 VMDIAYVQSHD--SGE-YVCRA 381
+ V G + C
Sbjct: 416 LYSKLTVDKSRWQQGNVFSCSV 437
|
| >3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X* Length = 116 | Back alignment and structure |
|---|
Score = 39.6 bits (92), Expect = 6e-04
Identities = 13/81 (16%), Positives = 20/81 (24%), Gaps = 19/81 (23%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFH-----------------KNRVKMVSDF-- 359
G C + + W P + ++
Sbjct: 11 GQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQF 70
Query: 360 GFVVMDIAYVQSHDSGEYVCR 380
G V + I+ DSG Y CR
Sbjct: 71 GEVSLTISNTNRGDSGVYCCR 91
|
| >1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663 | Back alignment and structure |
|---|
Score = 42.4 bits (98), Expect = 6e-04
Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 20/182 (10%)
Query: 525 DPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584
DP H + + D C +++ G Y G+ A
Sbjct: 496 DPYCAWSPPTATCVALHQTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGT----A 551
Query: 585 SLKCVSKTNLILESQLPEVEWFYNGKKLP-HGHRYRTFHDFGIVILDILYCYEENSGVYE 643
LKC +S L V W + L +Y ++I ++ E +SGVY+
Sbjct: 552 ELKCS------QKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNL---SEGDSGVYQ 602
Query: 644 CRATNK-YGSDVTKASLKCVSKTNLI----LESQLPELRRQPAGVPDSEDGRPPQFTSEF 698
C + + V + K V + ++ + L ++ ++
Sbjct: 603 CLSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQT-EGSRIATKVLVASTKHHHH 661
Query: 699 QH 700
H
Sbjct: 662 HH 663
|
| >1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126 | Back alignment and structure |
|---|
Score = 39.5 bits (92), Expect = 7e-04
Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 28/102 (27%)
Query: 319 GDSAHFECTLT--PVNDPELKVEWF---------------HNGKPIFH------KNRVKM 355
G++A+ C T P + L +EW ++G I+ K RV
Sbjct: 20 GETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHF 79
Query: 356 VSDF---GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
S+ G +++ +Q D G Y C+ K I
Sbjct: 80 TSNDLKSGDASINVTNLQLSDIGTYQCKV--KKAPGVANKKI 119
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 7e-04
Identities = 23/163 (14%), Positives = 43/163 (26%), Gaps = 19/163 (11%)
Query: 229 PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 288
+ + N E R++ + I G Y C+ +
Sbjct: 33 IREAYLTQLMIIKNSTYREIGRRLKFWNE-TDPEFVIDHMDANKAGRYQCQYRIGHYRFR 91
Query: 289 ISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH-----N 343
S LE V P ++ + L G++ C+ + + F
Sbjct: 92 YSDTLELVVTGLYGKPFLSADRGLV--LMPGENISLTCS-----SAHIPFDRFSLAKEGE 144
Query: 344 GKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYG 386
H++ + + V + SG Y C W
Sbjct: 145 LSLPQHQSGEHPAN------FSLGPVDLNVSGIYRCYGWYNRS 181
|
| >2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A* Length = 109 | Back alignment and structure |
|---|
Score = 38.8 bits (90), Expect = 7e-04
Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 20/82 (24%)
Query: 319 GDSAHFECTLT-PVNDPELKVEWFHNGKPIFH-----------------KNRVKMVSDF- 359
G +A+ C+ T P + + + W P +R ++ D
Sbjct: 9 GKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLN 68
Query: 360 -GFVVMDIAYVQSHDSGEYVCR 380
G V + I V D G Y CR
Sbjct: 69 KGDVSLIIKNVTLDDHGTYCCR 90
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 Length = 434 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 8e-04
Identities = 25/160 (15%), Positives = 52/160 (32%), Gaps = 12/160 (7%)
Query: 232 DQTMTVEFLYNGKPIEASHRIRTVHAFG-----MVVLEILGTKIEDTGVYTCRATNKWGQ 286
D + + + + + F + L I+ + + CR +
Sbjct: 261 DPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFP 320
Query: 287 AEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKP 346
A I + K K + P+ + E + D C +T ++ VEW +G+
Sbjct: 321 APIEKTI-SKTKGKPRAPQVYTIPPPKEQM-AKDKVSLTCMITDFFPEDITVEWQSDGQA 378
Query: 347 IFHKNRVKMVSDFG--FVVMDIAYVQSHD--SGE-YVCRA 381
+ + + D + V VQ + +G + C
Sbjct: 379 PENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSV 418
|
| >2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick filament, immune system, cell adhesion; NMR {Mus musculus} Length = 142 | Back alignment and structure |
|---|
Score = 39.6 bits (92), Expect = 8e-04
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 69 IVPLKPE--FKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF--GFV 124
VP K E ++ E + Q E K N K+ +IFN K + G ++K D G +
Sbjct: 38 TVPTKSELAVEILEKGQVRFWMQAE-KLSSNAKVSYIFNEKEIFEGPKYKMHIDRNTGII 96
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTS 153
+ + ++ D D+G YT + + ++
Sbjct: 97 EMFMEKLQDEDEGTYTFQIQDGKATGHST 125
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 805 | |||
| 3b43_A | 570 | Titin; I-SET IG fold, extended poly-IG filament, e | 100.0 | |
| 1e07_A | 642 | Carcinoembryonic antigen; glycoprotein, CEA, tumou | 100.0 | |
| 3b43_A | 570 | Titin; I-SET IG fold, extended poly-IG filament, e | 100.0 | |
| 3dmk_A | 816 | DOWN syndrome cell adhesion molecule (dscam) ISOF | 100.0 | |
| 3dmk_A | 816 | DOWN syndrome cell adhesion molecule (dscam) ISOF | 100.0 | |
| 1e07_A | 642 | Carcinoembryonic antigen; glycoprotein, CEA, tumou | 100.0 | |
| 3v2a_R | 772 | Vascular endothelial growth factor receptor 2; IG- | 100.0 | |
| 2ocw_A | 585 | Polymeric-immunoglobulin receptor; SC, secretory, | 100.0 | |
| 2ec8_A | 524 | MAST/stem cell growth factor receptor; glycoprotei | 100.0 | |
| 3qs9_E | 527 | FL cytokine receptor; immunoglobulin-like domain, | 100.0 | |
| 2rcj_C | 523 | Light chain; immunoglobulin M, polymeric antibodie | 100.0 | |
| 3v2a_R | 772 | Vascular endothelial growth factor receptor 2; IG- | 100.0 | |
| 1z7z_I | 450 | Intercellular adhesion molecule-1; ICAM-1,kilifi,C | 100.0 | |
| 1z7z_I | 450 | Intercellular adhesion molecule-1; ICAM-1,kilifi,C | 100.0 | |
| 3kld_A | 384 | Contactin 4, axcam, BIG-2; cell adhesion, protein | 100.0 | |
| 3kld_A | 384 | Contactin 4, axcam, BIG-2; cell adhesion, protein | 100.0 | |
| 2ec8_A | 524 | MAST/stem cell growth factor receptor; glycoprotei | 100.0 | |
| 3laf_A | 403 | Deleted in colorectal cancer; netrin-1 receptor, i | 100.0 | |
| 2ocw_A | 585 | Polymeric-immunoglobulin receptor; SC, secretory, | 100.0 | |
| 3qs7_E | 423 | FL cytokine receptor; immunoglobulin-like domain, | 100.0 | |
| 1cs6_A | 382 | Axonin-1; neural cell adhesion, cell adhesion; 1.8 | 100.0 | |
| 1cs6_A | 382 | Axonin-1; neural cell adhesion, cell adhesion; 1.8 | 100.0 | |
| 3laf_A | 403 | Deleted in colorectal cancer; netrin-1 receptor, i | 100.0 | |
| 3qs7_E | 423 | FL cytokine receptor; immunoglobulin-like domain, | 100.0 | |
| 3p3y_A | 404 | Neurofascin; IG domains, cell adhesion; HET: NAG; | 100.0 | |
| 2v5m_A | 388 | Dscam; neurobiology SPL immunoglobulin domain, cel | 100.0 | |
| 2rcj_C | 523 | Light chain; immunoglobulin M, polymeric antibodie | 100.0 | |
| 3p3y_A | 404 | Neurofascin; IG domains, cell adhesion; HET: NAG; | 100.0 | |
| 2v5m_A | 388 | Dscam; neurobiology SPL immunoglobulin domain, cel | 100.0 | |
| 3qs9_E | 527 | FL cytokine receptor; immunoglobulin-like domain, | 100.0 | |
| 1bih_A | 395 | Hemolin; insect immunity, LPS-binding, homophilic | 100.0 | |
| 1bih_A | 395 | Hemolin; insect immunity, LPS-binding, homophilic | 100.0 | |
| 2rik_A | 284 | Titin; I-SET IG fold, poly-IG linear array, struct | 100.0 | |
| 2rik_A | 284 | Titin; I-SET IG fold, poly-IG linear array, struct | 100.0 | |
| 1wio_A | 363 | CD4, T-cell surface glycoprotein CD4; immunoglobul | 100.0 | |
| 1qgc_4 | 438 | Protein (immunoglobulin); virus-antibody complex, | 100.0 | |
| 1qgc_4 | 438 | Protein (immunoglobulin); virus-antibody complex, | 100.0 | |
| 1wio_A | 363 | CD4, T-cell surface glycoprotein CD4; immunoglobul | 100.0 | |
| 1igt_B | 444 | IGG2A intact antibody - MAB231; intact immunoglobu | 100.0 | |
| 2y25_A | 317 | Myomesin; structural protein, sarcomere, M-BAND, i | 100.0 | |
| 1hzh_H | 457 | IGG, immunoglobulin heavy chain; antibody, immune | 100.0 | |
| 2yd9_A | 304 | Receptor-type tyrosine-protein phosphatase S; hydr | 100.0 | |
| 2yd9_A | 304 | Receptor-type tyrosine-protein phosphatase S; hydr | 100.0 | |
| 2y25_A | 317 | Myomesin; structural protein, sarcomere, M-BAND, i | 100.0 | |
| 2wim_A | 291 | N-CAM 2, NCAM2, neural cell adhesion molecule 2; c | 100.0 | |
| 1igt_B | 444 | IGG2A intact antibody - MAB231; intact immunoglobu | 100.0 | |
| 1iga_A | 475 | IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg | 100.0 | |
| 2wim_A | 291 | N-CAM 2, NCAM2, neural cell adhesion molecule 2; c | 100.0 | |
| 1qz1_A | 291 | Neural cell adhesion molecule 1, 140 kDa isoform; | 100.0 | |
| 1qz1_A | 291 | Neural cell adhesion molecule 1, 140 kDa isoform; | 100.0 | |
| 2y23_A | 312 | Myomesin; structural protein, sarcomere, M-BAND, i | 100.0 | |
| 2y23_A | 312 | Myomesin; structural protein, sarcomere, M-BAND, i | 100.0 | |
| 1igy_B | 434 | IGG1 intact antibody MAB61.1.3; intact immunoglobu | 100.0 | |
| 1hzh_H | 457 | IGG, immunoglobulin heavy chain; antibody, immune | 99.98 | |
| 1iga_A | 475 | IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg | 99.97 | |
| 1zvo_C | 512 | Myeloma immunoglobulin D delta; immunoglobulin fol | 99.97 | |
| 2o26_X | 290 | MAST/stem cell growth factor receptor; stem cell f | 99.97 | |
| 4fqp_A | 313 | Poliovirus receptor; immunoglobulin-like domain, I | 99.97 | |
| 1zvo_C | 512 | Myeloma immunoglobulin D delta; immunoglobulin fol | 99.97 | |
| 2o26_X | 290 | MAST/stem cell growth factor receptor; stem cell f | 99.97 | |
| 1ry7_B | 334 | FGFR-3, fibroblast growth factor receptor 3; FGF-F | 99.97 | |
| 4dep_C | 349 | Interleukin-1 receptor accessory protein; B-trefoi | 99.97 | |
| 1igy_B | 434 | IGG1 intact antibody MAB61.1.3; intact immunoglobu | 99.97 | |
| 4fqp_A | 313 | Poliovirus receptor; immunoglobulin-like domain, I | 99.97 | |
| 1ry7_B | 334 | FGFR-3, fibroblast growth factor receptor 3; FGF-F | 99.97 | |
| 4dep_C | 349 | Interleukin-1 receptor accessory protein; B-trefoi | 99.97 | |
| 3ejj_X | 289 | Macrophage colony-stimulating factor 1 receptor; g | 99.96 | |
| 1itb_B | 315 | Type 1 interleukin-1 receptor; immunoglobulin fold | 99.96 | |
| 1itb_B | 315 | Type 1 interleukin-1 receptor; immunoglobulin fold | 99.96 | |
| 3o4o_C | 339 | Interleukin-1 receptor type 2; cytokine-receptor c | 99.96 | |
| 4fom_A | 308 | Poliovirus receptor-related protein 3; immunoglobu | 99.96 | |
| 3oq3_B | 329 | IFN-alpha/beta binding protein C12R; mousepox viru | 99.96 | |
| 3ejj_X | 289 | Macrophage colony-stimulating factor 1 receptor; g | 99.96 | |
| 3o4o_C | 339 | Interleukin-1 receptor type 2; cytokine-receptor c | 99.96 | |
| 3rjd_A | 262 | High affinity immunoglobulin gamma FC receptor I; | 99.96 | |
| 4fom_A | 308 | Poliovirus receptor-related protein 3; immunoglobu | 99.96 | |
| 3oq3_B | 329 | IFN-alpha/beta binding protein C12R; mousepox viru | 99.96 | |
| 2wng_A | 327 | Tyrosine-protein phosphatase non-receptor type sub | 99.96 | |
| 3u83_A | 331 | Poliovirus receptor-related protein 1; nectin-1, h | 99.96 | |
| 3rjd_A | 262 | High affinity immunoglobulin gamma FC receptor I; | 99.96 | |
| 2jll_A | 389 | NCAM2, neural cell adhesion molecule 2; immunoglob | 99.96 | |
| 2wng_A | 327 | Tyrosine-protein phosphatase non-receptor type sub | 99.96 | |
| 3u83_A | 331 | Poliovirus receptor-related protein 1; nectin-1, h | 99.96 | |
| 4dkd_C | 292 | Macrophage colony-stimulating factor 1 receptor; d | 99.95 | |
| 4dkd_C | 292 | Macrophage colony-stimulating factor 1 receptor; d | 99.95 | |
| 2jll_A | 389 | NCAM2, neural cell adhesion molecule 2; immunoglob | 99.95 | |
| 3vh8_G | 316 | Killer cell immunoglobulin-like receptor 3DL1; imm | 99.95 | |
| 2nzi_A | 305 | Titin; IG-domain, FNIII-domain, transferase; 2.90A | 99.95 | |
| 2oz4_A | 265 | Intercellular adhesion molecule 1; IGSF domain, st | 99.95 | |
| 3mjg_X | 289 | Beta-type platelet-derived growth factor receptor; | 99.95 | |
| 3vh8_G | 316 | Killer cell immunoglobulin-like receptor 3DL1; imm | 99.95 | |
| 3mjg_X | 289 | Beta-type platelet-derived growth factor receptor; | 99.95 | |
| 2oz4_A | 265 | Intercellular adhesion molecule 1; IGSF domain, st | 99.95 | |
| 2nzi_A | 305 | Titin; IG-domain, FNIII-domain, transferase; 2.90A | 99.94 | |
| 2a38_A | 194 | Titin; Z1Z2, structural protein; 2.00A {Homo sapie | 99.94 | |
| 2wqr_A | 323 | IG epsilon chain C region; immune system, immunogl | 99.94 | |
| 1za6_B | 344 | IGG heavy chain; immunoglobulin fold, CH2-domain-d | 99.93 | |
| 2j8h_A | 197 | Titin, connectin; cardiomyopathy, nuclear protein, | 99.93 | |
| 3rbs_A | 207 | Myomesin-1; immunoglobulin C-SET domain, contractI | 99.93 | |
| 3lcy_A | 197 | Titin; A-BAND, IG tandem domains, ATP-binding, cal | 99.93 | |
| 2yd6_A | 212 | PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa | 99.93 | |
| 2a38_A | 194 | Titin; Z1Z2, structural protein; 2.00A {Homo sapie | 99.92 | |
| 2yd1_A | 212 | Tyrosine-protein phosphatase LAR; hydrolase; 1.80A | 99.92 | |
| 2wqr_A | 323 | IG epsilon chain C region; immune system, immunogl | 99.92 | |
| 1za6_B | 344 | IGG heavy chain; immunoglobulin fold, CH2-domain-d | 99.92 | |
| 2j8h_A | 197 | Titin, connectin; cardiomyopathy, nuclear protein, | 99.92 | |
| 2wv3_A | 190 | Neuroplastin; igcam, membrane, glycoprotein, cell | 99.92 | |
| 3rbs_A | 207 | Myomesin-1; immunoglobulin C-SET domain, contractI | 99.92 | |
| 3lcy_A | 197 | Titin; A-BAND, IG tandem domains, ATP-binding, cal | 99.91 | |
| 2va4_A | 192 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; t | 99.91 | |
| 2yd6_A | 212 | PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa | 99.9 | |
| 2r15_A | 212 | Myomesin-1; sarcomeric protein, IG-like domains, h | 99.9 | |
| 2yd1_A | 212 | Tyrosine-protein phosphatase LAR; hydrolase; 1.80A | 99.9 | |
| 2wv3_A | 190 | Neuroplastin; igcam, membrane, glycoprotein, cell | 99.9 | |
| 2v44_A | 189 | NCAM2, neural cell adhesion molecule 2; phosphoryl | 99.9 | |
| 2iep_A | 192 | Muscle-specific kinase receptor; beta-sandwich, si | 99.9 | |
| 2c5d_C | 195 | AXL oncogene, tyrosine-protein kinase receptor UFO | 99.9 | |
| 2r15_A | 212 | Myomesin-1; sarcomeric protein, IG-like domains, h | 99.9 | |
| 2va4_A | 192 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; t | 99.9 | |
| 4fa8_A | 203 | Secreted protein BARF1; immunoglobulin-like domain | 99.9 | |
| 2v5t_A | 189 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; p | 99.9 | |
| 1epf_A | 191 | NCAM, protein (neural cell adhesion molecule); imm | 99.9 | |
| 4fa8_A | 203 | Secreted protein BARF1; immunoglobulin-like domain | 99.89 | |
| 3grw_A | 241 | Fibroblast growth factor receptor 3; FGFR3, protei | 99.89 | |
| 1rhf_A | 182 | Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 | 99.89 | |
| 2c5d_C | 195 | AXL oncogene, tyrosine-protein kinase receptor UFO | 99.88 | |
| 2v5t_A | 189 | NCAM2, N-CAM 2, neural cell adhesion molecule 2; p | 99.88 | |
| 2v44_A | 189 | NCAM2, neural cell adhesion molecule 2; phosphoryl | 99.88 | |
| 3ojm_B | 231 | Fibroblast growth factor receptor 2; beta trefoil | 99.87 | |
| 2vr9_A | 217 | Roundabout 1, ROBO; immunoglobulin-like domain, AX | 99.87 | |
| 2iep_A | 192 | Muscle-specific kinase receptor; beta-sandwich, si | 99.87 | |
| 1epf_A | 191 | NCAM, protein (neural cell adhesion molecule); imm | 99.87 | |
| 3grw_A | 241 | Fibroblast growth factor receptor 3; FGFR3, protei | 99.87 | |
| 2v9r_A | 212 | Roundabout homolog 1; proto-oncogene, differentiat | 99.87 | |
| 1rhf_A | 182 | Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 | 99.87 | |
| 2c1o_A | 254 | IGK-C protein; FAB fragment, enantioselective, fin | 99.86 | |
| 1f97_A | 212 | Junction adhesion molecule; immunoglobulin superfa | 99.86 | |
| 3b5h_A | 184 | Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce | 99.86 | |
| 3k0w_A | 218 | Mucosa-associated lymphoid tissue lymphoma translo | 99.86 | |
| 3sgj_C | 204 | Human FCG3A receptor; receptor complex, FC recepto | 99.86 | |
| 3ojm_B | 231 | Fibroblast growth factor receptor 2; beta trefoil | 99.86 | |
| 3jz7_A | 214 | MCAR, CAR, coxsackievirus and adenovirus receptor | 99.86 | |
| 2vr9_A | 217 | Roundabout 1, ROBO; immunoglobulin-like domain, AX | 99.85 | |
| 2c1o_A | 254 | IGK-C protein; FAB fragment, enantioselective, fin | 99.85 | |
| 3k0w_A | 218 | Mucosa-associated lymphoid tissue lymphoma translo | 99.85 | |
| 3s97_C | 201 | Contactin-1; carbonic anhdyrase like immunoglobuli | 99.85 | |
| 4f80_A | 226 | Butyrophilin subfamily 3 member A1; B7 superfamily | 99.85 | |
| 2x1w_L | 213 | Vascular endothelial growth factor receptor 2; hor | 99.84 | |
| 3bp6_B | 202 | Programmed cell death 1 ligand 2; PD-1, PD-L2, com | 99.84 | |
| 2v9r_A | 212 | Roundabout homolog 1; proto-oncogene, differentiat | 99.84 | |
| 1f97_A | 212 | Junction adhesion molecule; immunoglobulin superfa | 99.84 | |
| 3p2t_A | 196 | Leukocyte immunoglobulin-like receptor subfamily 4 | 99.84 | |
| 3sgj_C | 204 | Human FCG3A receptor; receptor complex, FC recepto | 99.84 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.84 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.84 | |
| 3r4d_A | 208 | CEA-related cell adhesion molecule 1, isoform 1/2; | 99.83 | |
| 2x1w_L | 213 | Vascular endothelial growth factor receptor 2; hor | 99.83 | |
| 3bp6_B | 202 | Programmed cell death 1 ligand 2; PD-1, PD-L2, com | 99.83 | |
| 1f2q_A | 176 | High affinity immunoglobulin epsilon receptor ALP | 99.83 | |
| 3b5h_A | 184 | Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce | 99.83 | |
| 2d3v_A | 196 | Leukocyte immunoglobulin-like receptor subfamily A | 99.83 | |
| 3s97_C | 201 | Contactin-1; carbonic anhdyrase like immunoglobuli | 99.83 | |
| 1fnl_A | 175 | Low affinity immunoglobulin gamma FC region recept | 99.82 | |
| 2fbo_J | 250 | V1V2;, variable region-containing chitin-binding p | 99.82 | |
| 1nbq_A | 209 | JAM, junctional adhesion molecule 1, PAM-1; reovir | 99.82 | |
| 3r4d_A | 208 | CEA-related cell adhesion molecule 1, isoform 1/2; | 99.82 | |
| 1vca_A | 202 | VCAM-D1,2, human vascular cell adhesion molecule-1 | 99.82 | |
| 3mj8_L | 213 | Stimulatory hamster antibody HL4E10 FAB light CHA; | 99.82 | |
| 1f2q_A | 176 | High affinity immunoglobulin epsilon receptor ALP | 99.82 | |
| 2fbo_J | 250 | V1V2;, variable region-containing chitin-binding p | 99.81 | |
| 1ugn_A | 198 | LIR1, leukocyte immunoglobulin-like receptor 1; im | 99.81 | |
| 3jz7_A | 214 | MCAR, CAR, coxsackievirus and adenovirus receptor | 99.81 | |
| 1uct_A | 218 | Immunoglobulin alpha FC receptor; beta stands, imm | 99.81 | |
| 1hng_A | 176 | CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra | 99.81 | |
| 1hng_A | 176 | CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra | 99.81 | |
| 1oll_A | 188 | NK receptor; immune system/receptor, NK cell trigg | 99.81 | |
| 4frw_A | 218 | Poliovirus receptor-related protein 4; immunoglobu | 99.81 | |
| 1vca_A | 202 | VCAM-D1,2, human vascular cell adhesion molecule-1 | 99.8 | |
| 3knb_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, AT | 99.8 | |
| 3ry4_A | 170 | Low affinity immunoglobulin gamma FC region recep; | 99.8 | |
| 3p2t_A | 196 | Leukocyte immunoglobulin-like receptor subfamily 4 | 99.8 | |
| 3mj8_L | 213 | Stimulatory hamster antibody HL4E10 FAB light CHA; | 99.8 | |
| 2gi7_A | 184 | GPVI protein; IG-like domains, blood clotting, cel | 99.8 | |
| 1nbq_A | 209 | JAM, junctional adhesion molecule 1, PAM-1; reovir | 99.8 | |
| 1b6u_A | 257 | KIR2DL3, P58 killer cell inhibitory receptor; natu | 99.8 | |
| 1fnl_A | 175 | Low affinity immunoglobulin gamma FC region recept | 99.8 | |
| 3sbw_C | 222 | Programmed cell death 1 ligand 1; PD-1, PD-L1, B7- | 99.79 | |
| 3d9a_L | 213 | Light chain of hyhel10 antibody fragment (FAB); ly | 99.79 | |
| 2d3v_A | 196 | Leukocyte immunoglobulin-like receptor subfamily A | 99.79 | |
| 1lk3_L | 210 | 9D7 light chain; antigen-antibody complex, immune | 99.79 | |
| 2pet_A | 231 | Lutheran blood group glycoprotein; immunoglobulin | 99.79 | |
| 1ugn_A | 198 | LIR1, leukocyte immunoglobulin-like receptor 1; im | 99.79 | |
| 2ny1_B | 184 | T-cell surface glycoprotein CD4; HIV, GP120, CD4, | 99.79 | |
| 4f80_A | 226 | Butyrophilin subfamily 3 member A1; B7 superfamily | 99.78 | |
| 3tv3_L | 211 | PGT128 light chain, IG lambda-2 chain C regions; F | 99.78 | |
| 1uct_A | 218 | Immunoglobulin alpha FC receptor; beta stands, imm | 99.78 | |
| 3nl4_L | 213 | Antigen binding fragment, immunoglobulin IGG - LI; | 99.78 | |
| 4frw_A | 218 | Poliovirus receptor-related protein 4; immunoglobu | 99.78 | |
| 1q0x_L | 212 | FAB 9B1, light chain; anti-morphine antibody, FAB | 99.78 | |
| 2gi7_A | 184 | GPVI protein; IG-like domains, blood clotting, cel | 99.78 | |
| 2pet_A | 231 | Lutheran blood group glycoprotein; immunoglobulin | 99.78 | |
| 2ghw_B | 247 | Anti-SARS SCFV antibody, 80R; S protein, neutraliz | 99.78 | |
| 1f3r_B | 257 | FV antibody fragment; IG-fold, immuno complex, ant | 99.78 | |
| 1mq8_A | 291 | ICAM-1, intercellular adhesion molecule-1, CD54 an | 99.78 | |
| 1p6f_A | 242 | NKP46, natural cytotoxicity triggering receptor 1; | 99.78 | |
| 2ghw_B | 247 | Anti-SARS SCFV antibody, 80R; S protein, neutraliz | 99.78 | |
| 1nkr_A | 201 | P58-CL42 KIR; inhibitory receptor, natural killer | 99.77 | |
| 1oll_A | 188 | NK receptor; immune system/receptor, NK cell trigg | 99.77 | |
| 1nqb_A | 256 | Single-chain antibody fragment; multivalent antibo | 99.77 | |
| 3auv_A | 276 | SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid | 99.77 | |
| 1lk3_L | 210 | 9D7 light chain; antigen-antibody complex, immune | 99.77 | |
| 3s96_B | 218 | 3B5H10 FAB light chain; huntingtin, immune system; | 99.77 | |
| 3d9a_L | 213 | Light chain of hyhel10 antibody fragment (FAB); ly | 99.77 | |
| 3ry4_A | 170 | Low affinity immunoglobulin gamma FC region recep; | 99.77 | |
| 3knb_A | 100 | Titin; IG-like, titin, OBSL1, ATP-binding, calmodu | 99.76 | |
| 1nqb_A | 256 | Single-chain antibody fragment; multivalent antibo | 99.76 | |
| 1f3r_B | 257 | FV antibody fragment; IG-fold, immuno complex, ant | 99.76 | |
| 3juy_B | 256 | 3B3 single chain variant HIV-1 antibody; envelope | 99.76 | |
| 1jbj_A | 186 | CD3 epsilon and gamma ectodomain fragment complex; | 99.76 | |
| 3r06_A | 213 | Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; | 99.76 | |
| 3s96_B | 218 | 3B5H10 FAB light chain; huntingtin, immune system; | 99.76 | |
| 2if7_A | 193 | SLAM family member 6; NTB-A, homophilic receptor, | 99.76 | |
| 1q0x_L | 212 | FAB 9B1, light chain; anti-morphine antibody, FAB | 99.76 | |
| 3tv3_L | 211 | PGT128 light chain, IG lambda-2 chain C regions; F | 99.76 | |
| 3juy_B | 256 | 3B3 single chain variant HIV-1 antibody; envelope | 99.75 | |
| 2ny1_B | 184 | T-cell surface glycoprotein CD4; HIV, GP120, CD4, | 99.75 | |
| 3umt_A | 256 | SCFV heavy chain and light chain; stability engine | 99.75 | |
| 3mj6_A | 268 | Junctional adhesion molecule-like; immunoglobulin | 99.75 | |
| 1mq8_A | 291 | ICAM-1, intercellular adhesion molecule-1, CD54 an | 99.75 | |
| 1c1e_H | 219 | Catalytic antibody 1E9 (heavy chain); diels-alder, | 99.75 | |
| 2zg1_A | 214 | Sialic acid-binding IG-like lectin 5; siglec-5 inh | 99.75 | |
| 1b6u_A | 257 | KIR2DL3, P58 killer cell inhibitory receptor; natu | 99.75 | |
| 3gkz_A | 257 | Anti-methamphetamine single chain FV; therapeutic | 99.75 | |
| 3sbw_C | 222 | Programmed cell death 1 ligand 1; PD-1, PD-L1, B7- | 99.75 | |
| 2xzc_L | 216 | FAB A.17 light chain; immune system; HET: XOP; 1.3 | 99.75 | |
| 3gkz_A | 257 | Anti-methamphetamine single chain FV; therapeutic | 99.75 | |
| 3uzq_A | 253 | Anti-dengue MAB 4E11; dengue antibody neutralizati | 99.75 | |
| 1moe_A | 240 | Anti-CEA MAB T84.66; anti carcinoembryonic antigen | 99.75 | |
| 4i0k_A | 222 | CD276 antigen; immunoglobulin domain, glycoprotein | 99.74 | |
| 1dr9_A | 201 | B7-1 (CD80), T lymphocyte activation antigen; IG s | 99.74 | |
| 1hnf_A | 182 | CD2; T lymphocyte adhesion glycoprotein; HET: NAG; | 99.74 | |
| 3auv_A | 276 | SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid | 99.74 | |
| 3r06_A | 213 | Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; | 99.74 | |
| 3sob_L | 237 | Antibody light chain; beta propeller, protein bind | 99.74 | |
| 3esu_F | 250 | Antibody 14B7* light chain and antibody 14B7* heav | 99.74 | |
| 3uzq_A | 253 | Anti-dengue MAB 4E11; dengue antibody neutralizati | 99.74 | |
| 3nl4_L | 213 | Antigen binding fragment, immunoglobulin IGG - LI; | 99.74 | |
| 1nfd_E | 212 | H57 FAB; complex (immunoreceptor-immunoglobulin), | 99.74 | |
| 1c1e_H | 219 | Catalytic antibody 1E9 (heavy chain); diels-alder, | 99.74 | |
| 3pv7_A | 248 | B7-H6, IG-like domain-containing protein DKFZP686O | 99.74 | |
| 1qok_A | 282 | MFE-23 recombinant antibody fragment; immunoglobul | 99.74 | |
| 4fmk_A | 225 | Poliovirus receptor-related protein 2; immunoglobu | 99.73 | |
| 3bkj_L | 252 | WO2 IGG2A FAB fragment light chain kappa; abeta, F | 99.73 | |
| 1nkr_A | 201 | P58-CL42 KIR; inhibitory receptor, natural killer | 99.73 | |
| 3umt_A | 256 | SCFV heavy chain and light chain; stability engine | 99.73 | |
| 1qok_A | 282 | MFE-23 recombinant antibody fragment; immunoglobul | 99.73 | |
| 3esu_F | 250 | Antibody 14B7* light chain and antibody 14B7* heav | 99.73 | |
| 1dr9_A | 201 | B7-1 (CD80), T lymphocyte activation antigen; IG s | 99.73 | |
| 1p6f_A | 242 | NKP46, natural cytotoxicity triggering receptor 1; | 99.73 | |
| 2if7_A | 193 | SLAM family member 6; NTB-A, homophilic receptor, | 99.73 | |
| 1q9r_B | 222 | S25-2 FAB (IGG1K) heavy chain; antigen-binding fra | 99.73 | |
| 3sob_L | 237 | Antibody light chain; beta propeller, protein bind | 99.73 | |
| 2p1y_A | 238 | Bispecific alpha/beta TCR; autoimmunity, immunoglo | 99.73 | |
| 1hnf_A | 182 | CD2; T lymphocyte adhesion glycoprotein; HET: NAG; | 99.73 | |
| 1jbj_A | 186 | CD3 epsilon and gamma ectodomain fragment complex; | 99.72 | |
| 3d9a_H | 210 | Heavy chain of hyhel10 antibody fragment (FAB); ly | 99.72 | |
| 1svz_A | 247 | Immunoglobulin;, single-chain FV fragment 1696; an | 99.72 | |
| 1q9r_B | 222 | S25-2 FAB (IGG1K) heavy chain; antigen-binding fra | 99.72 | |
| 2j6e_L | 234 | IGM, FAB light chain; autoimmune complex human IGM | 99.72 | |
| 3ux9_B | 256 | SCFV antibody; five helices, long loop connecting | 99.71 | |
| 2xzc_L | 216 | FAB A.17 light chain; immune system; HET: XOP; 1.3 | 99.71 | |
| 2v5y_A | 731 | Receptor-type tyrosine-protein phosphatase MU; mem | 99.71 | |
| 3ux9_B | 256 | SCFV antibody; five helices, long loop connecting | 99.71 | |
| 1sy6_A | 204 | T-cell surface glycoprotein CD3 gamma/epsilon chai | 99.71 | |
| 1nfd_E | 212 | H57 FAB; complex (immunoreceptor-immunoglobulin), | 99.71 | |
| 4fmk_A | 225 | Poliovirus receptor-related protein 2; immunoglobu | 99.71 | |
| 3knb_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, AT | 99.71 | |
| 3d9a_H | 210 | Heavy chain of hyhel10 antibody fragment (FAB); ly | 99.71 | |
| 2znx_A | 242 | SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s | 99.71 | |
| 2v5y_A | 731 | Receptor-type tyrosine-protein phosphatase MU; mem | 99.71 | |
| 4dzb_B | 246 | Vbeta2 (MAIT T cell receptor); immune system; 1.70 | 99.71 | |
| 4i0k_A | 222 | CD276 antigen; immunoglobulin domain, glycoprotein | 99.71 | |
| 3eow_R | 221 | Poliovirus receptor; immunoglobulin super family, | 99.71 | |
| 3pv7_A | 248 | B7-H6, IG-like domain-containing protein DKFZP686O | 99.7 | |
| 3tf7_C | 256 | 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; | 99.7 | |
| 2j6e_L | 234 | IGM, FAB light chain; autoimmune complex human IGM | 99.7 | |
| 2vol_A | 207 | Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, | 99.7 | |
| 3shs_A | 304 | HOC head outer capsid protein; immunoglobulin-like | 99.7 | |
| 3bkj_L | 252 | WO2 IGG2A FAB fragment light chain kappa; abeta, F | 99.7 | |
| 3qib_D | 270 | 2B4 beta chain; IG domain, immune system; HET: NAG | 99.7 | |
| 1mju_H | 227 | Immunoglobulin MS6-12; catalytic antibody, ester h | 99.7 | |
| 3mtr_A | 215 | N-CAM-1, NCAM-1, neural cell adhesion molecule 1; | 99.7 | |
| 2vol_A | 207 | Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, | 99.7 | |
| 1moe_A | 240 | Anti-CEA MAB T84.66; anti carcinoembryonic antigen | 99.7 | |
| 2dru_A | 180 | Chimera of CD48 antigen and T-cell surface antige; | 99.7 | |
| 2fbj_H | 220 | IGA-kappa J539 FAB (heavy chain); immunoglobulin; | 99.7 | |
| 1sy6_A | 204 | T-cell surface glycoprotein CD3 gamma/epsilon chai | 99.7 | |
| 2gjj_A | 264 | A21 single-chain antibody fragment against ERBB2; | 99.7 | |
| 2zg1_A | 214 | Sialic acid-binding IG-like lectin 5; siglec-5 inh | 99.69 | |
| 1dee_B | 223 | IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin | 99.69 | |
| 2fbj_H | 220 | IGA-kappa J539 FAB (heavy chain); immunoglobulin; | 99.69 | |
| 1ccz_A | 171 | Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8 | 99.69 | |
| 2cqv_A | 114 | MLCK, myosin light chain kinase, smooth muscle and | 99.69 | |
| 1pz5_B | 220 | Heavy chain of FAB (SYA/J6); antibody-antigen stru | 99.69 | |
| 3nl4_H | 215 | Antigen binding fragment,immunoglobulin IGG - HEA; | 99.69 | |
| 3mtr_A | 215 | N-CAM-1, NCAM-1, neural cell adhesion molecule 1; | 99.69 | |
| 4dzb_B | 246 | Vbeta2 (MAIT T cell receptor); immune system; 1.70 | 99.69 | |
| 3qib_D | 270 | 2B4 beta chain; IG domain, immune system; HET: NAG | 99.68 | |
| 2znx_A | 242 | SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s | 99.68 | |
| 3eow_R | 221 | Poliovirus receptor; immunoglobulin super family, | 99.68 | |
| 2rgs_A | 218 | I, IG gamma-2B heavy chain; FC-fragment, immunoglo | 99.68 | |
| 3bqu_C | 233 | 3H6 FAB light chain; beta sheet, immune system; 3. | 99.68 | |
| 2rgs_A | 218 | I, IG gamma-2B heavy chain; FC-fragment, immunoglo | 99.68 | |
| 3mj6_A | 268 | Junctional adhesion molecule-like; immunoglobulin | 99.68 | |
| 2p1y_A | 238 | Bispecific alpha/beta TCR; autoimmunity, immunoglo | 99.68 | |
| 1gsm_A | 210 | Madcam-1, mucosal addressin cell adhesion molecule | 99.68 | |
| 1mju_H | 227 | Immunoglobulin MS6-12; catalytic antibody, ester h | 99.68 | |
| 3shs_A | 304 | HOC head outer capsid protein; immunoglobulin-like | 99.68 | |
| 1op3_H | 225 | FAB 2G12, heavy chain; domain-swapped FAB 2G12, an | 99.68 | |
| 3qp3_A | 103 | Titin; I-SET IG-like, sarcomere, M-BAND, transfera | 99.68 | |
| 2gki_A | 291 | Nuclease; anti-DNA antibody, catalytic antibody, i | 99.67 | |
| 1pz5_B | 220 | Heavy chain of FAB (SYA/J6); antibody-antigen stru | 99.67 | |
| 3nfj_J | 245 | T cell receptor beta chain; immunoglobulin family, | 99.67 | |
| 3fku_X | 280 | Neutralizing antibody F10; influenza, hemagglutini | 99.67 | |
| 1g1c_A | 99 | Immunoglobulin-like domain I1 from titin; immunogl | 99.66 | |
| 1svz_A | 247 | Immunoglobulin;, single-chain FV fragment 1696; an | 99.66 | |
| 1x9q_A | 268 | SCFV, 4M5.3 anti-fluorescein single chain antibody | 99.66 | |
| 3nl4_H | 215 | Antigen binding fragment,immunoglobulin IGG - HEA; | 99.66 | |
| 3fku_X | 280 | Neutralizing antibody F10; influenza, hemagglutini | 99.66 | |
| 1ccz_A | 171 | Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8 | 99.66 | |
| 2gki_A | 291 | Nuclease; anti-DNA antibody, catalytic antibody, i | 99.66 | |
| 3q5y_A | 240 | TCR N15 beta; IG, T cell receptor, antigen peptide | 99.66 | |
| 3m8o_H | 221 | Immunoglobulin A1 heavy chain; immunoglobulin fold | 99.66 | |
| 1dn0_B | 232 | IGM-kappa cold agglutinin (heavy chain); FAB, anti | 99.66 | |
| 3bae_H | 228 | WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO | 99.66 | |
| 3puc_A | 99 | Titin; I-SET IG-like domain, M-BAND, transferase; | 99.66 | |
| 3knb_A | 100 | Titin; IG-like, titin, OBSL1, ATP-binding, calmodu | 99.66 | |
| 1dee_B | 223 | IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin | 99.66 | |
| 3tf7_C | 256 | 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; | 99.65 | |
| 2dru_A | 180 | Chimera of CD48 antigen and T-cell surface antige; | 99.65 | |
| 4ei6_B | 245 | Vbeta16 XV19 type II natural killer T cell recept | 99.65 | |
| 1wit_A | 93 | Twitchin 18TH IGSF module; immunoglobulin superfam | 99.65 | |
| 1dn0_B | 232 | IGM-kappa cold agglutinin (heavy chain); FAB, anti | 99.65 | |
| 3pl6_D | 268 | MBP peptide / T-cell receptor beta chain chimera; | 99.65 | |
| 1op3_H | 225 | FAB 2G12, heavy chain; domain-swapped FAB 2G12, an | 99.65 | |
| 3bqu_C | 233 | 3H6 FAB light chain; beta sheet, immune system; 3. | 99.64 | |
| 3irg_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, co | 99.64 | |
| 2kkq_A | 116 | Myotilin; unknown function, actin-binding, cell me | 99.64 | |
| 1hxm_B | 242 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.64 | |
| 1waa_A | 93 | Titin; metal binding protein, calmodulin-binding, | 99.64 | |
| 4acp_A | 240 | IG gamma-1 chain C region; immune system, antibody | 99.64 | |
| 2w59_A | 231 | IGY FCU3-4; immunoglobulin, avian, immune system; | 99.63 | |
| 2yuz_A | 100 | Myosin-binding protein C, SLOW-type; immunoglobuli | 99.63 | |
| 2w59_A | 231 | IGY FCU3-4; immunoglobulin, avian, immune system; | 99.63 | |
| 3liz_H | 253 | 4C3 monoclonal antibody heavy chain; hydrolase-imm | 99.63 | |
| 3bae_H | 228 | WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO | 99.63 | |
| 1gsm_A | 210 | Madcam-1, mucosal addressin cell adhesion molecule | 99.63 | |
| 1u2h_A | 99 | APEG-1, aortic preferentially expressed protein 1; | 99.63 | |
| 3nfj_J | 245 | T cell receptor beta chain; immunoglobulin family, | 99.63 | |
| 2gjj_A | 264 | A21 single-chain antibody fragment against ERBB2; | 99.63 | |
| 3omz_A | 259 | Human vdelta1 gamma delta T cell receptor delta1A; | 99.62 | |
| 2wbj_D | 279 | OB TCR; transmembrane, immune response, T cell rec | 99.62 | |
| 1x9q_A | 268 | SCFV, 4M5.3 anti-fluorescein single chain antibody | 99.62 | |
| 2kdg_A | 100 | Myotilin; immonoglobulin domain, actin-binding, st | 99.62 | |
| 3q5y_A | 240 | TCR N15 beta; IG, T cell receptor, antigen peptide | 99.62 | |
| 2bk8_A | 97 | Connectin, M1, titin heart isoform N2-B; IG domain | 99.62 | |
| 2dm2_A | 110 | Palladin; beta-sandwich, KIAA0992, actin-associate | 99.62 | |
| 3m8o_H | 221 | Immunoglobulin A1 heavy chain; immunoglobulin fold | 99.62 | |
| 1c5d_H | 215 | Monoclonal antibody against the main immunogenic t | 99.62 | |
| 1bec_A | 238 | 14.3.D T cell antigen receptor; T cell receptor; 1 | 99.62 | |
| 2xqy_G | 261 | A13-D6.3 monoclonal antibody, envelope glycoprotei | 99.62 | |
| 2xqy_G | 261 | A13-D6.3 monoclonal antibody, envelope glycoprotei | 99.62 | |
| 4ei6_B | 245 | Vbeta16 XV19 type II natural killer T cell recept | 99.62 | |
| 1l6x_A | 207 | Immunoglobulin gamma-1 heavy chain constant regio; | 99.62 | |
| 3liz_H | 253 | 4C3 monoclonal antibody heavy chain; hydrolase-imm | 99.62 | |
| 2lvc_A | 91 | Obscurin-like protein 1; structural genomics, nort | 99.61 | |
| 1i1c_A | 239 | IGG2A, IG gamma-2A chain C region; FC, immune syst | 99.61 | |
| 2e7c_A | 118 | Myosin-binding protein C, fast-type; IG-like domai | 99.61 | |
| 1i1c_A | 239 | IGG2A, IG gamma-2A chain C region; FC, immune syst | 99.61 | |
| 3bn9_D | 257 | E2 FAB heavy chain; antibody-protease complex, pro | 99.61 | |
| 1l6x_A | 207 | Immunoglobulin gamma-1 heavy chain constant regio; | 99.61 | |
| 4acp_A | 240 | IG gamma-1 chain C region; immune system, antibody | 99.6 | |
| 3irg_A | 100 | Titin; IG-like, titin, OBSL1, complex, alternative | 99.6 | |
| 3pl6_D | 268 | MBP peptide / T-cell receptor beta chain chimera; | 99.6 | |
| 1nct_A | 106 | Titin; cell adhesion, glycoprotein, transmembrane, | 99.59 | |
| 1hxm_B | 242 | Gamma-delta T-cell receptor; IG domain, TCR, GDTCR | 99.59 | |
| 1he7_A | 126 | High affinity nerve growth factor receptor; transf | 99.59 | |
| 3qp3_A | 103 | Titin; I-SET IG-like, sarcomere, M-BAND, transfera | 99.59 | |
| 2lu7_A | 84 | Obscurin-like protein 1; structural genomics, nort | 99.59 | |
| 2dm3_A | 110 | KIAA0992 protein, palladin; beta-sandwich, myopall | 99.59 | |
| 2wbj_D | 279 | OB TCR; transmembrane, immune response, T cell rec | 99.59 | |
| 2edh_A | 113 | Obscurin; structural genomics, NPPSFA, national pr | 99.58 | |
| 3to4_D | 253 | NKT vbeta2 (mouse variable domain, human constant; | 99.58 | |
| 2edj_A | 100 | Roundabout homolog 2; KIAA1568 protein, beta sandw | 99.57 | |
| 3kvq_A | 108 | Vascular endothelial growth factor receptor 2; veg | 99.57 | |
| 3tv3_H | 239 | PGT128 heavy chain, IG gamma-1 chain C region; FAB | 99.57 | |
| 1c5d_H | 215 | Monoclonal antibody against the main immunogenic t | 99.57 | |
| 2dav_A | 126 | SLOW MYBP-C, myosin-binding protein C, SLOW-type; | 99.56 | |
| 3omz_A | 259 | Human vdelta1 gamma delta T cell receptor delta1A; | 99.56 | |
| 2ckn_A | 95 | Basic fibroblast growth factor receptor 1; kinase, | 99.56 | |
| 3bn9_D | 257 | E2 FAB heavy chain; antibody-protease complex, pro | 99.56 | |
| 2cqv_A | 114 | MLCK, myosin light chain kinase, smooth muscle and | 99.56 | |
| 3qhz_H | 232 | Human monoclonal antibody DEL2D1, FAB heavy chain; | 99.56 | |
| 2eo9_A | 118 | Roundabout homolog 1; beta-sandwich, IG-fold, H-RO | 99.56 | |
| 3o3u_N | 581 | Maltose-binding periplasmic protein, advanced Gly | 99.56 | |
| 2edf_A | 103 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.55 | |
| 1x44_A | 103 | Myosin-binding protein C, SLOW-type; IG-like domai | 99.55 | |
| 2yr3_A | 99 | Myosin light chain kinase, smooth muscle; IG domai | 99.55 | |
| 1gxe_A | 139 | Myosin binding protein C, cardiac-type; cytoskelet | 99.55 | |
| 1bec_A | 238 | 14.3.D T cell antigen receptor; T cell receptor; 1 | 99.55 | |
| 1fhg_A | 154 | Telokin; immunoglobulin fold, beta barrel, contrac | 99.55 | |
| 3puc_A | 99 | Titin; I-SET IG-like domain, M-BAND, transferase; | 99.55 | |
| 1g1c_A | 99 | Immunoglobulin-like domain I1 from titin; immunogl | 99.54 | |
| 1waa_A | 93 | Titin; metal binding protein, calmodulin-binding, | 99.54 | |
| 3u2s_H | 248 | PG9 heavy chain; greek KEY, immunoglobulin, immune | 99.54 | |
| 1oga_E | 252 | TRBC1, T-cell receptor beta chain C region; immune | 99.54 | |
| 3tv3_H | 239 | PGT128 heavy chain, IG gamma-1 chain C region; FAB | 99.53 | |
| 2eny_A | 104 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.53 | |
| 2lvc_A | 91 | Obscurin-like protein 1; structural genomics, nort | 99.53 | |
| 2e6p_A | 104 | Obscurin-like protein 1; IG-like domain, structura | 99.53 | |
| 1wwb_X | 103 | Protein (brain derived neurotrophic factor recepto | 99.53 | |
| 3irg_B | 107 | Obscurin-like protein 1; IG-like, titin, OBSL1, co | 99.53 | |
| 2yuz_A | 100 | Myosin-binding protein C, SLOW-type; immunoglobuli | 99.53 | |
| 3cx2_A | 108 | Myosin-binding protein C, cardiac-type; protonatio | 99.53 | |
| 1ow0_A | 214 | IG alpha-1 chain C region; IGA1, fcari, CD89, anti | 99.52 | |
| 3n9g_H | 230 | FAB fragment of MAB CR4354, heavy chain; human neu | 99.52 | |
| 2cry_A | 122 | KIN of IRRE-like protein 3; IG fold, KIN of irregu | 99.52 | |
| 1ypz_F | 230 | T-cell receptor gamma chain, beta-2-microglobulin; | 99.52 | |
| 2e7c_A | 118 | Myosin-binding protein C, fast-type; IG-like domai | 99.52 | |
| 2lu7_A | 84 | Obscurin-like protein 1; structural genomics, nort | 99.52 | |
| 2dlt_A | 106 | Myosin binding protein C, fast-type; IG-like domai | 99.52 | |
| 3qhz_H | 232 | Human monoclonal antibody DEL2D1, FAB heavy chain; | 99.51 | |
| 2bk8_A | 97 | Connectin, M1, titin heart isoform N2-B; IG domain | 99.51 | |
| 3to4_D | 253 | NKT vbeta2 (mouse variable domain, human constant; | 99.51 | |
| 2e6q_A | 112 | Obscurin-like protein 1; IG-like domain, structura | 99.51 | |
| 2edk_A | 101 | Myosin-binding protein C, fast-type; IG fold, fast | 99.5 | |
| 2yuv_A | 100 | Myosin-binding protein C, SLOW-type; SLOW-type myo | 99.5 | |
| 3o3u_N | 581 | Maltose-binding periplasmic protein, advanced Gly | 99.5 | |
| 3caf_A | 100 | Fibroblast growth factor receptor 2; FGFR2, D2, AT | 99.5 | |
| 1wit_A | 93 | Twitchin 18TH IGSF module; immunoglobulin superfam | 99.5 | |
| 2edn_A | 118 | Myosin-binding protein C, fast-type; beta-sandwich | 99.5 | |
| 2aty_A | 376 | Complement receptor chimeric conjugate CR2-IG; imm | 99.49 | |
| 2kdg_A | 100 | Myotilin; immonoglobulin domain, actin-binding, st | 99.49 | |
| 1u2h_A | 99 | APEG-1, aortic preferentially expressed protein 1; | 99.49 | |
| 2k1m_A | 95 | Myosin-binding protein C, cardiac-type; IG-I domai | 99.49 | |
| 3iu4_H | 263 | CHP3 FAB heavy chain; antibody, ganglioside, idiot | 99.49 | |
| 3u2s_H | 248 | PG9 heavy chain; greek KEY, immunoglobulin, immune | 99.49 | |
| 2kkq_A | 116 | Myotilin; unknown function, actin-binding, cell me | 99.48 | |
| 2dku_A | 103 | KIAA1556 protein; beta-sandwich, IG-fold, obscurin | 99.48 | |
| 2e7b_A | 103 | Obscurin; IG-like domain, structural genomics, NPP | 99.47 | |
| 3mlr_H | 226 | Human monoclonal anti-HIV-1 GP120 V3 antibody 255 | 99.47 | |
| 1oga_E | 252 | TRBC1, T-cell receptor beta chain C region; immune | 99.47 | |
| 1wwc_A | 118 | Protein (NT-3 growth factor receptor TRKC); TRK re | 99.47 | |
| 2aty_A | 376 | Complement receptor chimeric conjugate CR2-IG; imm | 99.47 | |
| 1ypz_E | 207 | T cell receptor delta, beta-2-microglobulin; H2-T2 | 99.47 | |
| 1ypz_F | 230 | T-cell receptor gamma chain, beta-2-microglobulin; | 99.47 | |
| 1ow0_A | 214 | IG alpha-1 chain C region; IGA1, fcari, CD89, anti | 99.47 | |
| 1pd6_A | 104 | Cardiac MYBP-C;, myosin-binding protein C, cardiac | 99.47 | |
| 2dm7_A | 108 | KIAA1556 protein; beta-sandwich, IG-fold, obscurin | 99.46 | |
| 2cr6_A | 115 | KIAA1556 protein, obscurin; IG-fold, immunoglobuli | 99.46 | |
| 2yuv_A | 100 | Myosin-binding protein C, SLOW-type; SLOW-type myo | 99.46 | |
| 3n9g_H | 230 | FAB fragment of MAB CR4354, heavy chain; human neu | 99.46 | |
| 3bfo_A | 91 | Mucosa-associated lymphoid tissue lymphoma translo | 99.46 | |
| 3sob_H | 256 | Antibody heavy chain, low-density lipoprotein rece | 99.46 | |
| 2cr3_A | 99 | Basic fibroblast growth factor receptor 1; IG fold | 99.46 | |
| 1nct_A | 106 | Titin; cell adhesion, glycoprotein, transmembrane, | 99.46 | |
| 2dm2_A | 110 | Palladin; beta-sandwich, KIAA0992, actin-associate | 99.45 | |
| 1fhg_A | 154 | Telokin; immunoglobulin fold, beta barrel, contrac | 99.45 | |
| 3irg_A | 100 | Titin; IG-like, titin, OBSL1, complex, alternative | 99.45 | |
| 1he7_A | 126 | High affinity nerve growth factor receptor; transf | 99.45 | |
| 2eny_A | 104 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.45 | |
| 2e6q_A | 112 | Obscurin-like protein 1; IG-like domain, structura | 99.45 | |
| 2edj_A | 100 | Roundabout homolog 2; KIAA1568 protein, beta sandw | 99.44 | |
| 1gxe_A | 139 | Myosin binding protein C, cardiac-type; cytoskelet | 99.44 | |
| 2dav_A | 126 | SLOW MYBP-C, myosin-binding protein C, SLOW-type; | 99.43 | |
| 2cpc_A | 113 | KIAA0657 protein; immunoglobulin domain, IG domain | 99.43 | |
| 2edh_A | 113 | Obscurin; structural genomics, NPPSFA, national pr | 99.42 | |
| 1wwb_X | 103 | Protein (brain derived neurotrophic factor recepto | 99.42 | |
| 1x44_A | 103 | Myosin-binding protein C, SLOW-type; IG-like domai | 99.42 | |
| 2yr3_A | 99 | Myosin light chain kinase, smooth muscle; IG domai | 99.42 | |
| 3so5_A | 112 | LIG-3, leucine-rich repeats and immunoglobulin-lik | 99.41 | |
| 3kvq_A | 108 | Vascular endothelial growth factor receptor 2; veg | 99.41 | |
| 3m45_A | 108 | Cell adhesion molecule 2; IG fold, dimer, disulfid | 99.41 | |
| 2cr6_A | 115 | KIAA1556 protein, obscurin; IG-fold, immunoglobuli | 99.41 | |
| 2ckn_A | 95 | Basic fibroblast growth factor receptor 1; kinase, | 99.4 | |
| 3mlr_H | 226 | Human monoclonal anti-HIV-1 GP120 V3 antibody 255 | 99.4 | |
| 1pd6_A | 104 | Cardiac MYBP-C;, myosin-binding protein C, cardiac | 99.4 | |
| 3iu4_H | 263 | CHP3 FAB heavy chain; antibody, ganglioside, idiot | 99.4 | |
| 2ens_A | 96 | Advanced glycosylation END product-specific recept | 99.39 | |
| 2v9t_A | 117 | Roundabout homolog 1; structural protein-receptor | 99.39 | |
| 2edf_A | 103 | Obscurin; beta-sandwich, IG-fold, structural genom | 99.39 | |
| 2dm3_A | 110 | KIAA0992 protein, palladin; beta-sandwich, myopall | 99.39 | |
| 2edk_A | 101 | Myosin-binding protein C, fast-type; IG fold, fast | 99.38 | |
| 3sob_H | 256 | Antibody heavy chain, low-density lipoprotein rece | 99.38 | |
| 2eo9_A | 118 | Roundabout homolog 1; beta-sandwich, IG-fold, H-RO | 99.38 | |
| 2e6p_A | 104 | Obscurin-like protein 1; IG-like domain, structura | 99.38 | |
| 3cx2_A | 108 | Myosin-binding protein C, cardiac-type; protonatio | 99.37 | |
| 4hwu_A | 95 | Fibroblast growth factor receptor 2; FGFR2, KGFR, | 99.37 | |
| 2edn_A | 118 | Myosin-binding protein C, fast-type; beta-sandwich | 99.37 | |
| 3s35_X | 122 | Vascular endothelial growth factor receptor 2; ant | 99.36 |
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-74 Score=653.56 Aligned_cols=546 Identities=24% Similarity=0.455 Sum_probs=474.4
Q ss_pred cCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEE
Q psy2166 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 63 ~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
..+|.|+.++. ++.+.+|+.++|.|.+. |.|.+.|+|+|||..+....++.+...++..+|.|.+++.+|+|.|+|.
T Consensus 3 ~~pP~f~~~~~-~~~v~~G~~v~L~C~~~--g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 79 (570)
T 3b43_A 3 MEPPYFIEPLE-HVEAAIGEPITLQCKVD--GTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCK 79 (570)
T ss_dssp CCCCEEEECCC-CEEECTTSCEEEEEEEE--SSSSCEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEE
T ss_pred CCCCcceEECC-ceEEcCCCEEEEEEEEc--cCCCCEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEE
Confidence 46788877655 78999999999999998 7899999999999999988899888877788999999999999999999
Q ss_pred EEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEE
Q psy2166 143 AWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAH 222 (805)
Q Consensus 143 a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~ 222 (805)
|.|..|.......+.|.... .||.|...+.+. .+.+|+.+.
T Consensus 80 a~N~~g~~~~~~~l~v~~~~--------------------------------------~~p~~~~~~~~~-~~~~G~~v~ 120 (570)
T 3b43_A 80 AENSVGAVASSAVLVIKERK--------------------------------------LPPSFARKLKDV-HETLGFPVA 120 (570)
T ss_dssp EEETTEEEEEEEEEEECCCC--------------------------------------CCCEESSCCCCE-EEETTSCEE
T ss_pred EEeCCceEEEEEEEEECCCC--------------------------------------CCCcccccCCCe-EecCCCeEE
Confidence 99999988888777765321 356666655554 367899999
Q ss_pred EEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEeccCCCC
Q psy2166 223 FEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQ 302 (805)
Q Consensus 223 l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~ 302 (805)
|.|.+ .|.|.+++.|+|+|..+....++..........|.|.++..+|+|.|+|.|.|..|....+..+.|.... .
T Consensus 121 l~C~~--~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~--~ 196 (570)
T 3b43_A 121 FECRI--NGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHE--V 196 (570)
T ss_dssp EEEEE--ESSSSCEEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC--C
T ss_pred EEEEE--ccCCCCEEEEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCC--C
Confidence 99998 6788899999999999988777766556667899999999999999999999999998888888776432 4
Q ss_pred CCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCcEEEEEEcccCcCCceEEEEEEE
Q psy2166 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAW 382 (805)
Q Consensus 303 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~ 382 (805)
+|.+...+.... +.+|+.++|.|.+. +.|.+.++|+|+|..+..+.++.+........|.|.++..+|+|.|+|.|.
T Consensus 197 pp~~~~~p~~~~-v~~G~~~~l~C~~~--g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 273 (570)
T 3b43_A 197 PPFFDLKPVSVD-LALGESGTFKCHVT--GTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYAS 273 (570)
T ss_dssp CCEEEECCCCBC-CBSBSCEEEEEEEE--SSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEE
T ss_pred CCccccCCceeE-ecCCCeEEEEEEEE--ECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEE
Confidence 677766665554 88999999999998 888999999999999988777777666666789999999999999999999
Q ss_pred eCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEe
Q psy2166 383 NKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLT 462 (805)
Q Consensus 383 n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (805)
|..|.....+.|.|
T Consensus 274 N~~g~~~~~~~l~V------------------------------------------------------------------ 287 (570)
T 3b43_A 274 NVAGKDSCSAQLGV------------------------------------------------------------------ 287 (570)
T ss_dssp ETTEEEEEEEEECC------------------------------------------------------------------
T ss_pred CCCCcEEEEEEEEe------------------------------------------------------------------
Confidence 99999887777765
Q ss_pred ccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCC
Q psy2166 463 PVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG 542 (805)
Q Consensus 463 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~ 542 (805)
..+|.|...+.....+.+|+.+.|.|.+. |.|.+.++|+|+|..+..+
T Consensus 288 ------------------------------~~~p~~~~~~~~~~~v~~g~~~~l~C~~~--g~P~p~v~W~k~~~~l~~~ 335 (570)
T 3b43_A 288 ------------------------------QEPPRFIKKLEPSRIVKQDEHTRYECKIG--GSPEIKVLWYKDETEIQES 335 (570)
T ss_dssp ------------------------------BCCCEEEECCCSBCCEESSCEEEEEEEEE--SSSSCEEEEEETTEECCCS
T ss_pred ------------------------------ecCCcccccCCCccEEcCCCcEEEEEEEe--eCCCCEEEEeECCEECCCC
Confidence 35677776655544578999999999999 7899999999999999988
Q ss_pred CceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeeeeeee--------------------ecCCCCe
Q psy2166 543 HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLI--------------------LESQLPE 602 (805)
Q Consensus 543 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~--------------------~~~~~p~ 602 (805)
.++.+...+....|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+|.+. .+.|.|.
T Consensus 336 ~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~ 415 (570)
T 3b43_A 336 SKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQ 415 (570)
T ss_dssp SSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCC
T ss_pred CcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCCE
Confidence 88887777777889999999999999999999999999999999998776542 1247789
Q ss_pred EEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCC
Q psy2166 603 VEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAG 682 (805)
Q Consensus 603 v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~ 682 (805)
++|+|+|..+..+.++.+..++....|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus 416 v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~-------------------- 475 (570)
T 3b43_A 416 VSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK-------------------- 475 (570)
T ss_dssp CEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC--------------------
T ss_pred EEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEec--------------------
Confidence 999999999998889998888888889999999999999999999999999999999887
Q ss_pred CCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEE-ccCCCCeEEEeeCcEEEEEEcCCCCCC
Q psy2166 683 VPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKP-IEASHRIRTVHAFGMVVLEILGTKIED 761 (805)
Q Consensus 683 ~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~-l~~~~~~~~~~~~~~~~L~i~~v~~~d 761 (805)
.||.|...+.+. .+.+|+.+.|.|.+. |.|+|.|+|+|+|.. +..+.++.+...++...|.|.++..+|
T Consensus 476 -------~~P~~~~~~~~~-~~~~g~~~~l~c~~~--g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 545 (570)
T 3b43_A 476 -------APPRFVKKLSDI-STVVGEEVQLQATIE--GAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPAN 545 (570)
T ss_dssp -------CCCEEEECCCCB-CCBTTCCEEEEEEEE--SCSSCCCEEEETTEECCCCTTTEEECCCSSEEEEEESSCCTTC
T ss_pred -------cCCcccccCCCc-eecCCCeEEEEEEEe--cCCCCEEEEEeCCeEeccCCCeEEEEECCCEEEEEECcCCHHH
Confidence 588999888888 999999999999999 999999999999854 455677777767777899999999999
Q ss_pred CEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 762 TGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 762 ~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
+|.|+|.|.|.+|.++.++.|.|.
T Consensus 546 ~G~Y~C~a~N~~G~~~~~a~L~V~ 569 (570)
T 3b43_A 546 AGKYTCQIKNEAGTQECFATLSVL 569 (570)
T ss_dssp CEEEEEEEECSSCEEEEEEEECCB
T ss_pred CEEEEEEEEECCcEEEEEEEEEEe
Confidence 999999999999999999999885
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-63 Score=570.31 Aligned_cols=531 Identities=18% Similarity=0.261 Sum_probs=410.2
Q ss_pred hhhhhHHhhhhhhcCccccCCCCCC----------CCc---CCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEE
Q psy2166 36 AGLEKVQEVEHALAGKYQRQPSGPE----------ETF---AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEW 102 (805)
Q Consensus 36 ~g~~~i~~~~~~d~g~y~c~~~~~~----------~~~---~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W 102 (805)
++.|.|.+++.+|+|.|+|.+.... .+. .+|.+... ....+.+|+.++|.|.+. + |.+.|+|
T Consensus 70 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~--~~~~v~~g~~v~l~C~~~--~-p~~~v~W 144 (642)
T 1e07_A 70 NASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSN--NSKPVEDKDAVAFTCEPE--T-QDATYLW 144 (642)
T ss_pred CCcEEECCCCcccCcEEEEEEEcCCCeEEEEEEEEEecccCCCCcEEcc--CceeEecCCcEEEEEECC--C-CCeeEEE
Confidence 3578999999999999999654321 111 23443322 235688999999999998 4 7899999
Q ss_pred EECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeE-EEEEEEEEeccccccccccCCCCcchhhhhH
Q psy2166 103 IFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGET-FTSTTIYCSTKESLIERTQHPKGEEGLEKIQ 181 (805)
Q Consensus 103 ~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~ 181 (805)
+|||..+..+.++.+..+++ .|.|.+++.+|+|.|+|.|.|..|.. .....|.|...+.
T Consensus 145 ~~~g~~l~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~------------------ 204 (642)
T 1e07_A 145 WVNNQSLPVSPRLQLSNGNR--TLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPD------------------ 204 (642)
T ss_pred EECCeECCCCCceEEcCCCC--EEEEeCCCcccCeeEEEEEecCCCCcccceEEEEEEeCCC------------------
Confidence 99999999888887766543 89999999999999999999987764 3456677764321
Q ss_pred hhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeE
Q psy2166 182 DLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261 (805)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~ 261 (805)
.+...+... .+.+|+.++|.|.+ .+.|.+.+.|+++|..+... .
T Consensus 205 ----------------------~~~~~~~~~-~~~~G~~~~l~C~~--~g~p~~~i~W~~~g~~i~~~-----------~ 248 (642)
T 1e07_A 205 ----------------------APTISPLNT-SYRSGENLNLSCHA--ASNPPAQYSWFVNGTFQQST-----------Q 248 (642)
T ss_pred ----------------------CcEEecCCc-ccccCCEEEEEEEc--CCCCCcEEEEEECCeEcccC-----------C
Confidence 111122222 47899999999998 78999999999999987432 3
Q ss_pred EEEEcCCCCcccEEEEEEEEcCCeeEEEE--EEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEE
Q psy2166 262 VLEILGTKIEDTGVYTCRATNKWGQAEIS--VNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVE 339 (805)
Q Consensus 262 ~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~--~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~ 339 (805)
.|.|.+++.+|+|.|+|.|.|..|....+ +.|.|...+ .+|.+.. .....+..|+.+.|.|.+. +.| +.+.
T Consensus 249 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~--~~p~i~~--~~~~~~~~g~~v~l~C~~~--~~p-~~v~ 321 (642)
T 1e07_A 249 ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEP--PKPFITS--NNSNPVEDEDAVALTCEPE--IQN-TTYL 321 (642)
T ss_pred ceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccC--CCCEEEc--CCceeEecCCcEEEEEECC--CCC-ccEE
Confidence 59999999999999999999988765443 455554321 2344432 2233366688899999997 555 6999
Q ss_pred EEECCEEccCCCceEEEEeCcEEEEEEcccCcCCceEEEEEEEeCceeeE-EEEEEEEEecccccccCCChhHHHHHHHh
Q psy2166 340 WFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDF-TRATIKCFGKGGVYLDSLQPESLARIREL 418 (805)
Q Consensus 340 W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~ 418 (805)
|+++|+.+....++.+..++. .|.|.++..+|+|.|+|.|.|..|... ..+.|.|...|.
T Consensus 322 W~~~g~~l~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~----------------- 382 (642)
T 1e07_A 322 WWVNNQSLPVSPRLQLSNDNR--TLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPD----------------- 382 (642)
T ss_pred EEECCccCCCcCCEEEeCCCC--EEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCC-----------------
Confidence 999999998777776655443 699999999999999999999998643 346676643221
Q ss_pred hhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCce
Q psy2166 419 ENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKF 498 (805)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~ 498 (805)
.+
T Consensus 383 ------------------------------------------------------------------------------~~ 384 (642)
T 1e07_A 383 ------------------------------------------------------------------------------DP 384 (642)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 11
Q ss_pred EecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCc
Q psy2166 499 ITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG 578 (805)
Q Consensus 499 ~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 578 (805)
...+.. ..+.+|+.++|.|.+. |.|.+.++|+|||..+..+. .|.|.++..+|+|.|+|.|.|..|
T Consensus 385 ~~~~~~-~~~~~g~~~~l~C~~~--g~p~~~i~W~~~g~~~~~~~-----------~L~i~~~~~~d~G~Y~C~a~n~~g 450 (642)
T 1e07_A 385 TISPSY-TYYRPGVNLSLSCHAA--SNPPAQYSWLIDGNIQQHTQ-----------ELFISNITEKNSGLYTCQANNSAS 450 (642)
T ss_pred eecCCc-eEecCCCcEEEEEEcC--ccCCCeEEEEECCEEcCCCc-----------eEEEccCChhhCeEEEEEEEcCCC
Confidence 122222 2378999999999998 78889999999999886432 499999999999999999999998
Q ss_pred ceEEEEE--EEEee---eeee--------------eec----CCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCC
Q psy2166 579 SDVTKAS--LKCVS---KTNL--------------ILE----SQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCY 635 (805)
Q Consensus 579 ~~~~~~~--l~V~~---~~~~--------------~~~----~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~ 635 (805)
....+.. |.|.. ++.+ .+. .+.+.+.|+++|..+..+.++.+..++ ..|.|.++.
T Consensus 451 ~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~--~~L~i~~v~ 528 (642)
T 1e07_A 451 GHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGN--RTLTLFNVT 528 (642)
T ss_pred CCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECCCCCcEEEEEECCEeCCCCCcEEEcCCC--cEEEEeecC
Confidence 8765543 44432 1211 111 356799999999999888888776554 359999999
Q ss_pred CCCcEEEEEEEEeCCcceEE-EEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEE
Q psy2166 636 EENSGVYECRATNKYGSDVT-KASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEA 714 (805)
Q Consensus 636 ~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C 714 (805)
.+|+|.|+|.|.|..|.... .+.|.|.. .|+.+...+.+. .+.+|+.+.|.|
T Consensus 529 ~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~--------------------------~p~~~~~~~~~~-~v~~g~~~~l~C 581 (642)
T 1e07_A 529 RNDARAYVCGIQNSVSANRSDPVTLDVLY--------------------------GPDTPIISPPDS-SYLSGANLNLSC 581 (642)
T ss_pred hhcCceEEEEeEcCCCCccCCCEEEEEEe--------------------------CCCcceecCCce-eEEcCCcEEEEE
Confidence 99999999999999998654 68899885 344555566677 899999999999
Q ss_pred EEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEEe
Q psy2166 715 SLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVW 787 (805)
Q Consensus 715 ~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 787 (805)
.+. |.|.|.|+|+|||..+..+ ..|.|.++..+|+|.|+|.|.|.+|..+.++.|+|.+.
T Consensus 582 ~~~--g~p~p~v~W~~~g~~i~~~-----------~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~s~~l~V~v~ 641 (642)
T 1e07_A 582 HSA--SNPSPQYSWRINGIPQQHT-----------QVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITVS 641 (642)
T ss_pred Eec--cCCCCeEEEEECCEECccC-----------ceEEECcccccCCeEEEEEEEecccCcceeEEEEEEEc
Confidence 998 9999999999999988643 26999999999999999999999999999999999874
|
| >3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-62 Score=553.73 Aligned_cols=500 Identities=22% Similarity=0.408 Sum_probs=416.5
Q ss_pred EEEEEEEecCCc-----eeccccCCCC-----------chhhhhHHhhhhhhcCccccCCCCCCC------------CcC
Q psy2166 13 TSGTLKCLGQKD-----IYLETQHPMG-----------AAGLEKVQEVEHALAGKYQRQPSGPEE------------TFA 64 (805)
Q Consensus 13 ~~~~l~~~~~~~-----~~~~~~~~~~-----------~~g~~~i~~~~~~d~g~y~c~~~~~~~------------~~~ 64 (805)
.+++|.|...+. .|++++.+.. ..+.|.|.+++.+|+|.|+|.+.+... ...
T Consensus 21 ~~v~L~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~v~~~~~ 100 (570)
T 3b43_A 21 EPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKL 100 (570)
T ss_dssp SCEEEEEEEESSSSCEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEECCCCC
T ss_pred CEEEEEEEEccCCCCEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEEEeCCceEEEEEEEEECCCCC
Confidence 357788876542 4666544431 224678999999999999998664321 123
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEE
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAW 144 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 144 (805)
+|.|...+. ++.+.+|+.++|.|.+. |.|.+.|+|+|||..+..+.++.........+|.|.+++.+|+|.|+|.|.
T Consensus 101 ~p~~~~~~~-~~~~~~G~~v~l~C~~~--g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~ 177 (570)
T 3b43_A 101 PPSFARKLK-DVHETLGFPVAFECRIN--GSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSAS 177 (570)
T ss_dssp CCEESSCCC-CEEEETTSCEEEEEEEE--SSSSCEEEEEETTEECCCCSSEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCcccccCC-CeEecCCCeEEEEEEEc--cCCCCEEEEEECCEECcCCCCEEEEEECCEEEEEECcCChHHCEEEEEEEE
Confidence 566655444 67888999999999998 688899999999999998888776666666799999999999999999999
Q ss_pred eCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEE
Q psy2166 145 NLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFE 224 (805)
Q Consensus 145 n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~ 224 (805)
|..|.......+.|.... .||.|...+... .+.+|+.++|.
T Consensus 178 n~~g~~~~~~~l~v~~~~--------------------------------------~pp~~~~~p~~~-~v~~G~~~~l~ 218 (570)
T 3b43_A 178 NPLGTASSSAKLTLSEHE--------------------------------------VPPFFDLKPVSV-DLALGESGTFK 218 (570)
T ss_dssp ETTEEEEEEEEEEEECCC--------------------------------------CCCEEEECCCCB-CCBSBSCEEEE
T ss_pred eCCcEEEEEEEEEEcCCC--------------------------------------CCCccccCCcee-EecCCCeEEEE
Confidence 999998888888875421 456666655554 47899999999
Q ss_pred EEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEeccCCCCCC
Q psy2166 225 ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPP 304 (805)
Q Consensus 225 C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~p 304 (805)
|.+ .|.|.+.++|+|+|..+....++.+....+...|.|.+++.+|+|.|+|.|.|..|..+.++.|.|. .+|
T Consensus 219 C~~--~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~-----~~p 291 (570)
T 3b43_A 219 CHV--TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ-----EPP 291 (570)
T ss_dssp EEE--ESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCB-----CCC
T ss_pred EEE--EECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEee-----cCC
Confidence 998 6888899999999999988888777666677899999999999999999999999999888888876 577
Q ss_pred eEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCcEEEEEEcccCcCCceEEEEEEEeC
Q psy2166 305 KFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNK 384 (805)
Q Consensus 305 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~ 384 (805)
.+...+.....+.+|+.+.|.|.+. |.|.+.+.|+|+|..+....++.+........|.|.++..+|+|.|+|.|.|.
T Consensus 292 ~~~~~~~~~~~v~~g~~~~l~C~~~--g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~ 369 (570)
T 3b43_A 292 RFIKKLEPSRIVKQDEHTRYECKIG--GSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNA 369 (570)
T ss_dssp EEEECCCSBCCEESSCEEEEEEEEE--SSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBT
T ss_pred cccccCCCccEEcCCCcEEEEEEEe--eCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeC
Confidence 7776655544578999999999998 89999999999999998888877766667778999999999999999999999
Q ss_pred ceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEecc
Q psy2166 385 YGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPV 464 (805)
Q Consensus 385 ~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (805)
.|.....+.|.|.
T Consensus 370 ~g~~~~~~~l~V~------------------------------------------------------------------- 382 (570)
T 3b43_A 370 AGSASSSTSLKVK------------------------------------------------------------------- 382 (570)
T ss_dssp TBCCEEEEEECEE-------------------------------------------------------------------
T ss_pred CCEEEEEEEEEec-------------------------------------------------------------------
Confidence 9999888888774
Q ss_pred CCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc
Q psy2166 465 TDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR 544 (805)
Q Consensus 465 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~ 544 (805)
.+|.|...+... .+.+|++++|.|.+. |.|.|.|+|+|||..|..+.+
T Consensus 383 -----------------------------~~P~~~~~~~~~-~~~~G~~v~l~C~~~--g~P~p~v~W~k~g~~l~~~~~ 430 (570)
T 3b43_A 383 -----------------------------EPPVFRKKPHPV-ETLKGADVHLECELQ--GTPPFQVSWHKDKRELRSGKK 430 (570)
T ss_dssp -----------------------------CCCEECSCCCCE-EECTTCCEEEEEEEE--SSSSCCCEEEETTEECCSSSS
T ss_pred -----------------------------CCCeeecCCCce-eecCCCEEEEEEEEe--cCCCCEEEEEECCEECcCCCC
Confidence 344454444443 378999999999999 788899999999999998889
Q ss_pred eEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeeeeeeee--------------------cCCCCeEE
Q psy2166 545 YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLIL--------------------ESQLPEVE 604 (805)
Q Consensus 545 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~--------------------~~~~p~v~ 604 (805)
+.+..++....|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.+.. +.|.|.+.
T Consensus 431 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~ 510 (570)
T 3b43_A 431 YKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVA 510 (570)
T ss_dssp EEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEEEECCCCBCCBTTCCEEEEEEEESCSSCCCE
T ss_pred EEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCcccccCCCceecCCCeEEEEEEEecCCCCEEE
Confidence 9888888888899999999999999999999999999999999988776432 34678999
Q ss_pred EEECCEEc-cCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEe
Q psy2166 605 WFYNGKKL-PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 662 (805)
Q Consensus 605 W~~~g~~l-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 662 (805)
|+|+|..+ ..+.++.+...++...|.|.++..+|+|.|+|.|.|.+|...+++.|.|.
T Consensus 511 W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~L~V~ 569 (570)
T 3b43_A 511 WFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569 (570)
T ss_dssp EEETTEECCCCTTTEEECCCSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEEECCB
T ss_pred EEeCCeEeccCCCeEEEEECCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEEEEEe
Confidence 99998654 45667777767778899999999999999999999999999999999886
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-62 Score=577.57 Aligned_cols=551 Identities=21% Similarity=0.294 Sum_probs=427.4
Q ss_pred chhhhhHHhhhhhhc-CccccCCCCCC---CC---------------cCCCeEEecC-CCCceecCCCcEEEEEEEecCC
Q psy2166 35 AAGLEKVQEVEHALA-GKYQRQPSGPE---ET---------------FAKPVFIVPL-KPEFKLGEAQPLHLEAQVEPKN 94 (805)
Q Consensus 35 ~~g~~~i~~~~~~d~-g~y~c~~~~~~---~~---------------~~~p~~~~~~-~~~~~v~~G~~v~L~C~~~~~~ 94 (805)
..|.|.|.+++.+|. |.|+|.+.... .. ..+|.+.... +....+.+|+.++|.|.+. |
T Consensus 197 ~~g~L~I~~v~~~D~~g~Y~C~~~~~~~~~~~~s~~~~~l~v~~~~~~~~P~i~~~~~~~~~~v~~g~~v~L~C~~~--g 274 (816)
T 3dmk_A 197 PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQ--G 274 (816)
T ss_dssp TTSCEEESSCCGGGSSCEEEEEEEETTTCCEEECSBCEEEEEECCCSCCCCBCCGGGGEEEEEECTTSCEEECCCCB--C
T ss_pred cCceEEEecCChhhccceeEEEEeeeeeeeeeecccccceEEeCCCCCCCCccccccCccceEEeCCCeEEEEEEee--e
Confidence 356789999999998 99999754211 00 1123332211 1235778999999999998 6
Q ss_pred CCCceEEEEECCEe------cCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEEEEEEEEeccccccccc
Q psy2166 95 DPNLKIEWIFNGKP------LELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERT 168 (805)
Q Consensus 95 ~p~~~v~W~k~g~~------i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~ 168 (805)
.|.+.|.|+|++.. +....++... ++ +|.|.+++.+|+|.|+|.|.|..|.......|.|..++
T Consensus 275 ~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~--~~--~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~------ 344 (816)
T 3dmk_A 275 YPVPVFRWYKFIEGTTRKQAVVLNDRVKQV--SG--TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPL------ 344 (816)
T ss_dssp SSCCEEEEEEECTTSSCEEECCCSSSEEEE--TT--EEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEE------
T ss_pred cCCCeEEEEeCCCCCccCcceecCCceEec--cc--eEEECCCCHhHCEEEEEEEEcCCCceEEEEEEEEcCCC------
Confidence 89999999995432 2223343322 22 79999999999999999999999988888888876432
Q ss_pred cCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccC
Q psy2166 169 QHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEA 248 (805)
Q Consensus 169 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~ 248 (805)
.+...+... .+.+|+.+.|.|.+ .+.|.+.+.|+|+|..+..
T Consensus 345 -----------------------------------~~~~~~~~~-~v~~G~~v~l~C~~--~g~p~~~v~W~k~g~~~~~ 386 (816)
T 3dmk_A 345 -----------------------------------SAKIDPPTQ-TVDFGRPAVFTCQY--TGNPIKTVSWMKDGKAIGH 386 (816)
T ss_dssp -----------------------------------EEEEESSEE-ECCTTSCEEEEEEE--EEECCCEEEEEETTEECSC
T ss_pred -----------------------------------ceeeCCCce-EecCCCCEEEEEEE--eccCCCEEEEEECCEECCC
Confidence 222222222 47899999999998 5778899999999998865
Q ss_pred CCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEE
Q psy2166 249 SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTL 328 (805)
Q Consensus 249 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~ 328 (805)
.. ..|.|.+++.+|+|.|+|.+.|..+....++.+.|.... .+|.+...+.... +.+|+.+.|.|.+
T Consensus 387 ~~----------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~--~~p~i~~~~~~~~-v~~G~~v~L~C~~ 453 (816)
T 3dmk_A 387 SE----------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRF--DPPVIRQAFQEET-MEPGPSVFLKCVA 453 (816)
T ss_dssp CS----------SEEEESSCCGGGCEEEEEEEECSSCEEEECCEEECCCSS--CCCEEEEECCCEE-ECSSSCEEEEEEE
T ss_pred CC----------CEEEEcCCCHHHCEEEEEEEECCCCcEEEEEEEEEcccc--CCCceEecCcceE-EcCCCCEEEEEEE
Confidence 43 269999999999999999999999888877777764322 5677766555544 8899999999999
Q ss_pred eecCCCCcEEEEEECCEEccCCCceEEEE-----eCcEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEeccccc
Q psy2166 329 TPVNDPELKVEWFHNGKPIFHKNRVKMVS-----DFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVY 403 (805)
Q Consensus 329 ~~~~~p~~~v~W~~~g~~l~~~~~~~~~~-----~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~ 403 (805)
. +.|.+.++|+++|..+....++.... ......|.|.++..+|+|.|+|.|.|..|.....+.|.|..+
T Consensus 454 ~--g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~---- 527 (816)
T 3dmk_A 454 G--GNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGL---- 527 (816)
T ss_dssp E--CSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSS----
T ss_pred e--cCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecC----
Confidence 7 89999999999999998776665432 123356999999999999999999999999988888887532
Q ss_pred ccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCC
Q psy2166 404 LDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQ 483 (805)
Q Consensus 404 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 483 (805)
T Consensus 528 -------------------------------------------------------------------------------- 527 (816)
T 3dmk_A 528 -------------------------------------------------------------------------------- 527 (816)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCC-
Q psy2166 484 QPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCY- 562 (805)
Q Consensus 484 ~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~- 562 (805)
|.+ ..+... .+.+|+.++|.|.+. +.|.+.++|+|+|..+..+.+..+..++ .|.|.++.
T Consensus 528 ------------p~~-~~~~~~-~v~~G~~v~l~C~~~--g~p~~~i~W~k~~~~l~~~~~~~~~~~~---~l~i~~v~~ 588 (816)
T 3dmk_A 528 ------------PYI-RQMEKK-AIVAGETLIVTCPVA--GYPIDSIVWERDNRALPINRKQKVFPNG---TLIIENVER 588 (816)
T ss_dssp ------------CEE-CCCCCE-EEETTCCEEEECCEE--CSSEEEEEEEETTEESCCSTTEEECTTS---EEEESSCCH
T ss_pred ------------Cee-EccCCe-EEecCCeEEEEEEec--CCCCCEEEEEECCeEcccCCceEEecCC---eEEEEecCc
Confidence 222 122222 378999999999999 7788899999999999877766654443 49999998
Q ss_pred CCCCEEEEEEEEcCCcce-EEEEEEEEeeeeee----------------eecC-----C-CCeEEEEECCEEccCCCceE
Q psy2166 563 EENSGVYECRATNKYGSD-VTKASLKCVSKTNL----------------ILES-----Q-LPEVEWFYNGKKLPHGHRYR 619 (805)
Q Consensus 563 ~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~----------------~~~~-----~-~p~v~W~~~g~~l~~~~~~~ 619 (805)
.+|+|.|+|.|.|..|.. ...+.|.|..++.+ .+.| + .+.+.|+++|..+..+..+.
T Consensus 589 ~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~ 668 (816)
T 3dmk_A 589 NSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGIT 668 (816)
T ss_dssp HHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCE
T ss_pred cccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCee
Confidence 589999999999999854 45667777665532 1222 2 33899999999987665555
Q ss_pred EEe-eCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecC
Q psy2166 620 TFH-DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEF 698 (805)
Q Consensus 620 ~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~ 698 (805)
... .+....|.|.++..+|+|.|+|.|.|..|.....+.|.|.. ||.|...+
T Consensus 669 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~---------------------------~P~~~~~~ 721 (816)
T 3dmk_A 669 TSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYV---------------------------PPRWILEP 721 (816)
T ss_dssp EEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEE---------------------------EEEEEECC
T ss_pred EEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEe---------------------------CCceeeec
Confidence 443 34567899999999999999999999999999999999984 67777777
Q ss_pred CcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEcc-------CCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEc
Q psy2166 699 QHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIE-------ASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 771 (805)
Q Consensus 699 ~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~-------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N 771 (805)
.+. .+.+|+.++|.|.+. |.|.|.|+|+|++..+. .+.++.+ ..+ +|.|.++..+|+|.|+|.|.|
T Consensus 722 ~~~-~v~~G~~v~l~C~~~--g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~--~~~--~L~i~~v~~~d~G~Y~C~a~N 794 (816)
T 3dmk_A 722 TDK-AFAQGSDAKVECKAD--GFPKPQVTWKKAVGDTPGEYKDLKKSDNIRV--EEG--TLHVDNIQKTNEGYYLCEAIN 794 (816)
T ss_dssp CCE-EEETTCCEEEECEEE--EESCCEEECCEECSSSTTCCBCCCCBTTEEE--ETT--EEEECSCCGGGCEEEEEEEEC
T ss_pred ccc-eecCCCcEEEEEEEe--cCCCCeEEEEecCCCCCccccccccCCCEEe--cCC--EEEECcCChhhCeEEEEEEEe
Confidence 777 899999999999999 99999999999875443 2233332 334 699999999999999999999
Q ss_pred CCccEEEEEEEEEEEe
Q psy2166 772 KWGQAEISVNLECVVW 787 (805)
Q Consensus 772 ~~G~~~~~~~l~V~~~ 787 (805)
.+|.+..++.+..+..
T Consensus 795 ~~G~~~~~v~~~~~~~ 810 (816)
T 3dmk_A 795 GIGSGLSAVIMISVQA 810 (816)
T ss_dssp SSSSCEEEEEEEEEEC
T ss_pred CCCCCcEEEEEEEeec
Confidence 9999999998887653
|
| >3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-58 Score=548.31 Aligned_cols=640 Identities=18% Similarity=0.264 Sum_probs=458.7
Q ss_pred CcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEE-CCEecCCCCceEEEecCcEEEEEEcccccCC-----
Q psy2166 62 TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF-NGKPLELGSRFKTTADFGFVTLDLTEVYDRD----- 135 (805)
Q Consensus 62 ~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k-~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D----- 135 (805)
...+|.|...+...+.+.+|+.++|.|.+. |.|.+.|.|+| ||..+....+......++ +|.|.++..+|
T Consensus 35 ~~~~P~~~~~p~~~~~~~~g~~~~l~C~a~--g~p~p~~~W~k~~g~~~~~~~~~~~~~~~g--~l~i~~~~~~~~~~~~ 110 (816)
T 3dmk_A 35 DQKGPVFLKEPTNRIDFSNSTGAEIECKAS--GNPMPEIIWIRSDGTAVGDVPGLRQISSDG--KLVFPPFRAEDYRQEV 110 (816)
T ss_dssp -CEEEEEEECCCSEEEEETTTCEEEECEEE--EESCCEEEEEETTSCBCCCBTTTBEECSTT--EEEECCCCGGGCCHHH
T ss_pred ccCCCcEEeCCCCeEEEECCCCeEEEeeec--CCCCCEEEEEeCCCCCccCCCceEEEeeCC--cEEEcCCChHHccccc
Confidence 345688888877667889999999999998 68999999999 898887554433333333 79999998887
Q ss_pred -CeEEEEEEEeCCeeE-EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccccccc
Q psy2166 136 -QGIYTCRAWNLAGET-FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLS 213 (805)
Q Consensus 136 -~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 213 (805)
+|.|+|.|.|..|.. +..+.|.+... +.+...+...
T Consensus 111 d~G~Y~C~a~n~~G~~~S~~~~v~~~~~-----------------------------------------~~~~~~~~~~- 148 (816)
T 3dmk_A 111 HAQVYACLARNQFGSIISRDVHVRAVVA-----------------------------------------QYYEADVNKE- 148 (816)
T ss_dssp HEEEEEEEEEETTEEEEEEEEEEEEECC-----------------------------------------CCCCCBCCCE-
T ss_pred cceEEEEEEecCcceEEccceEEEEEEc-----------------------------------------cccEEEEecc-
Confidence 899999999999976 33444544321 1122222222
Q ss_pred ccCCCceEEEEEEEeeCCCC--CeEEEEEECCEEcc-----CCCcEEEEEEcCeEEEEEcCCCCccc-EEEEEEEEcCCe
Q psy2166 214 NLSEGEIAHFEASLIPVGDQ--TMTVEFLYNGKPIE-----ASHRIRTVHAFGMVVLEILGTKIEDT-GVYTCRATNKWG 285 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~p--~~~i~W~k~g~~l~-----~~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~~~n~~g 285 (805)
.+.+|+.+.|.|.+.. ..+ .+.+.|++++..+. ...++.+. .++ .|.|.+++.+|+ |.|+|.+.+...
T Consensus 149 ~v~~G~~v~L~C~~~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~r~~~~-~~g--~L~I~~v~~~D~~g~Y~C~~~~~~~ 224 (816)
T 3dmk_A 149 HVIRGNSAVIKCLIPS-FVADFVEVVSWHTDEEENYFPGAEYDGKYLVL-PSG--ELHIREVGPEDGYKSYQCRTKHRLT 224 (816)
T ss_dssp EEETTSCEEECCBCCH-HHHTTEEEEEEEETTSCEECBSSCBTTTEEEC-TTS--CEEESSCCGGGSSCEEEEEEEETTT
T ss_pred eEecCceEEEEECCCc-cccccEEEEEEEecCceEeccccCCCceEEEe-cCc--eEEEecCChhhccceeEEEEeeeee
Confidence 3779999999997631 222 27999999886543 23454432 223 699999999999 999999997543
Q ss_pred e-EE---EEEEEEEeccCCCCCCeEEecCC-CcccccCCCeEEEEEEEeecCCCCcEEEEEECCEE------ccCCCceE
Q psy2166 286 Q-AE---ISVNLECVDKSKGQPPKFTSHIK-SLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKP------IFHKNRVK 354 (805)
Q Consensus 286 ~-~~---~~~~l~v~~~~~~~~p~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~------l~~~~~~~ 354 (805)
. .. ....+.+.......+|.+..... ....+..|+.++|.|.+. +.|.+.+.|+|++.. +....+..
T Consensus 225 ~~~~~s~~~~~l~v~~~~~~~~P~i~~~~~~~~~~v~~g~~v~L~C~~~--g~p~p~v~W~k~~~~~~~~~~~~~~~~~~ 302 (816)
T 3dmk_A 225 GETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQ--GYPVPVFRWYKFIEGTTRKQAVVLNDRVK 302 (816)
T ss_dssp CCEEECSBCEEEEEECCCSCCCCBCCGGGGEEEEEECTTSCEEECCCCB--CSSCCEEEEEEECTTSSCEEECCCSSSEE
T ss_pred eeeeecccccceEEeCCCCCCCCccccccCccceEEeCCCeEEEEEEee--ecCCCeEEEEeCCCCCccCcceecCCceE
Confidence 2 21 12345554433223455433221 123378999999999997 889999999995432 21222322
Q ss_pred EEEeCcEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCccc
Q psy2166 355 MVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVA 434 (805)
Q Consensus 355 ~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (805)
...+ .|.|.++..+|+|.|+|.|.|..|.....+.|.|..++...... . ......+....+.|....
T Consensus 303 --~~~~--~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~---~------~~~v~~G~~v~l~C~~~g 369 (816)
T 3dmk_A 303 --QVSG--TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDP---P------TQTVDFGRPAVFTCQYTG 369 (816)
T ss_dssp --EETT--EEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEES---S------EEECCTTSCEEEEEEEEE
T ss_pred --eccc--eEEECCCCHhHCEEEEEEEEcCCCceEEEEEEEEcCCCceeeCC---C------ceEecCCCCEEEEEEEec
Confidence 2223 69999999999999999999999988888888887654332211 0 122334555666666554
Q ss_pred CCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCC-CCCCCceEecCCCcccccCCCe
Q psy2166 435 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAP-VAEAPKFITQISDVTQLKEGQS 513 (805)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~-~~~~P~~~~~~~~~~~v~~G~~ 513 (805)
.+...+.|+.+...+..+........+...+.+.|.|.+.+....... .....+. ...+|.+...+.... +.+|+.
T Consensus 370 ~p~~~v~W~k~g~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~--~~~l~v~~~~~~p~i~~~~~~~~-v~~G~~ 446 (816)
T 3dmk_A 370 NPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEA--SAELKLGGRFDPPVIRQAFQEET-MEPGPS 446 (816)
T ss_dssp ECCCEEEEEETTEECSCCSSEEEESSCCGGGCEEEEEEEECSSCEEEE--CCEEECCCSSCCCEEEEECCCEE-ECSSSC
T ss_pred cCCCEEEEEECCEECCCCCCEEEEcCCCHHHCEEEEEEEECCCCcEEE--EEEEEEccccCCCceEecCcceE-EcCCCC
Confidence 455567787766666555444334456778889999999876432211 1111121 246777776665554 899999
Q ss_pred EEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEe-----eCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFH-----DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
++|.|.+. |.|.+.++|+++|..+..+.++.... ....+.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 447 v~L~C~~~--g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 524 (816)
T 3dmk_A 447 VFLKCVAG--GNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNV 524 (816)
T ss_dssp EEEEEEEE--CSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEEe--cCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEE
Confidence 99999998 78899999999999998877765422 123457999999999999999999999999999999999
Q ss_pred eeeeee--------------eec-----CCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCC-CCCcEEEEEEEEe
Q psy2166 589 VSKTNL--------------ILE-----SQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCY-EENSGVYECRATN 648 (805)
Q Consensus 589 ~~~~~~--------------~~~-----~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~a~n 648 (805)
...+.+ .+. .|.+.+.|+++|..+..+.+..+..++ .|.|.++. .+|+|.|+|.|.|
T Consensus 525 ~~~p~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~---~l~i~~v~~~~d~G~Y~C~a~n 601 (816)
T 3dmk_A 525 YGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNG---TLIIENVERNSDQATYTCVAKN 601 (816)
T ss_dssp CSSCEECCCCCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEECTTS---EEEESSCCHHHHCEEEEEEEEE
T ss_pred ecCCeeEccCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEecCC---eEEEEecCccccCEEEEEEEEE
Confidence 766532 222 255689999999999877777665443 39999998 5899999999999
Q ss_pred CCcce-EEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeee-cCCcccccCCCCeEEEEEEEeecCCCC-eE
Q psy2166 649 KYGSD-VTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTS-EFQHLSNLSEGEIAHFEASLIPVGDQT-MT 725 (805)
Q Consensus 649 ~~g~~-~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~-~~~~~~~v~~G~~~~l~C~~~~~g~p~-~~ 725 (805)
..|.. ...+.|.|..+ |.+.. .+... .+.+|+.++|.|.+. +.|+ +.
T Consensus 602 ~~g~~~~~~~~v~v~~~---------------------------p~~~~~~~~~~-~~~~G~~v~L~C~~~--~~~~~~~ 651 (816)
T 3dmk_A 602 QEGYSARGSLEVQVMVL---------------------------PRIIPFAFEEG-PAQVGQYLTLHCSVP--GGDLPLN 651 (816)
T ss_dssp SSSCEEEEEEEEEEECC---------------------------CCCBCCCCCSS-CEESSCEEEEEEBCC--CSSSCCE
T ss_pred CCCceeeeeEEEEEecC---------------------------Ccccccccccc-ccCCCCeEEEEEEEe--CCCCCCE
Confidence 99864 34667777643 33322 23344 788999999999997 5554 59
Q ss_pred EEEEECCEEccCCCCeEEEee-CcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEEeC-------------CCc
Q psy2166 726 VEFLYNGKPIEASHRIRTVHA-FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWS-------------PSQ 791 (805)
Q Consensus 726 v~W~~~g~~l~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~-------------~~~ 791 (805)
|+|+++|+.+..+.++.+... .....|.|.++..+|+|.|+|.|.|.+|....++.|.|..+| ...
T Consensus 652 i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~v~~G~~ 731 (816)
T 3dmk_A 652 IDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSD 731 (816)
T ss_dssp EEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEEEEECCCCEEEETTCC
T ss_pred EEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCceeeecccceecCCCc
Confidence 999999999987766655433 456789999999999999999999999999999999998653 134
Q ss_pred ceEEEeecccCCC
Q psy2166 792 TKLVYSLFEVPQP 804 (805)
Q Consensus 792 ~~~~~~~~~~~~~ 804 (805)
..+.|.+.+.|.|
T Consensus 732 v~l~C~~~g~P~p 744 (816)
T 3dmk_A 732 AKVECKADGFPKP 744 (816)
T ss_dssp EEEECEEEEESCC
T ss_pred EEEEEEEecCCCC
Confidence 6788988888887
|
| >1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-57 Score=521.36 Aligned_cols=520 Identities=18% Similarity=0.274 Sum_probs=390.1
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecCC-------------------CCceEEEecCcEEEEEEcccccCC
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL-------------------GSRFKTTADFGFVTLDLTEVYDRD 135 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~-------------------~~~~~~~~~~~~~~L~I~~~~~~D 135 (805)
.+.+.+|+.++|.|... +.+.+.|.|+|+...... .+|+.+..+ .+|.|.+++.+|
T Consensus 8 ~~~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~gr~~~~~~---~sL~I~~v~~~D 82 (642)
T 1e07_A 8 PFNVAEGKEVLLLVHNL--PQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPN---ASLLIQNIIQND 82 (642)
T ss_pred CCcccccccEEEEEccC--CCCceEEEEECCcccCCcceEEEEEccccccccCccccCceeeccC---CcEEECCCCccc
Confidence 57899999999999976 456779999994422111 112222222 279999999999
Q ss_pred CeEEEEEEEeC-CeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccc
Q psy2166 136 QGIYTCRAWNL-AGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSN 214 (805)
Q Consensus 136 ~G~Y~C~a~n~-~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 214 (805)
+|.|+|.+.+. .+.......|.|...+ .+|.+..... ..
T Consensus 83 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~--------------------------------------~~p~i~~~~~--~~ 122 (642)
T 1e07_A 83 TGFYTLHVIKSDLVNEEATGQFRVYPEL--------------------------------------PKPSISSNNS--KP 122 (642)
T ss_pred CcEEEEEEEcCCCeEEEEEEEEEecccC--------------------------------------CCCcEEccCc--ee
Confidence 99999999986 3444566667775422 2344443221 23
Q ss_pred cCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeE-EEEEEE
Q psy2166 215 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA-EISVNL 293 (805)
Q Consensus 215 v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~-~~~~~l 293 (805)
+.+|+.+.|.|.+ .+ |.+.+.|+++|..+....++.+... ...|.|.+++.+|+|.|+|.|.|..+.. +..+.|
T Consensus 123 v~~g~~v~l~C~~--~~-p~~~v~W~~~g~~l~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l 197 (642)
T 1e07_A 123 VEDKDAVAFTCEP--ET-QDATYLWWVNNQSLPVSPRLQLSNG--NRTLTLFNVTRNDTASYKCETQNPVSARRSDSVIL 197 (642)
T ss_pred EecCCcEEEEEEC--CC-CCeeEEEEECCeECCCCCceEEcCC--CCEEEEeCCCcccCeeEEEEEecCCCCcccceEEE
Confidence 6789999999998 55 8899999999999987776654433 3589999999999999999999987754 455677
Q ss_pred EEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCcEEEEEEcccCcCC
Q psy2166 294 ECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHD 373 (805)
Q Consensus 294 ~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d 373 (805)
.|... |+.+...+.... +.+|+.++|.|.+. +.|.+.+.|+++|..+... ..|.|.++..+|
T Consensus 198 ~V~~~----p~~~~~~~~~~~-~~~G~~~~l~C~~~--g~p~~~i~W~~~g~~i~~~-----------~~L~i~~~~~~d 259 (642)
T 1e07_A 198 NVLYG----PDAPTISPLNTS-YRSGENLNLSCHAA--SNPPAQYSWFVNGTFQQST-----------QELFIPNITVNN 259 (642)
T ss_pred EEEeC----CCCcEEecCCcc-cccCCEEEEEEEcC--CCCCcEEEEEECCeEcccC-----------CceEEecccccC
Confidence 77642 222233333333 78999999999996 8999999999999988432 248899999999
Q ss_pred ceEEEEEEEeCceeeEEEE--EEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecC
Q psy2166 374 SGEYVCRAWNKYGEDFTRA--TIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKE 451 (805)
Q Consensus 374 ~G~Y~C~a~n~~g~~~~~~--~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (805)
+|.|+|.|.|..|....+. .|.|..++
T Consensus 260 ~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~--------------------------------------------------- 288 (642)
T 1e07_A 260 SGSYTCQAHNSDTGLNRTTVTTITVYAEP--------------------------------------------------- 288 (642)
T ss_pred CeEEEEEEEeCCCceEEeeeEEEEEEccC---------------------------------------------------
Confidence 9999999999988765543 44443211
Q ss_pred CceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEE
Q psy2166 452 GQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVE 531 (805)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~ 531 (805)
.+|.+. ......+..|+.+.|.|.+. +.| +.++
T Consensus 289 ------------------------------------------~~p~i~--~~~~~~~~~g~~v~l~C~~~--~~p-~~v~ 321 (642)
T 1e07_A 289 ------------------------------------------PKPFIT--SNNSNPVEDEDAVALTCEPE--IQN-TTYL 321 (642)
T ss_pred ------------------------------------------CCCEEE--cCCceeEecCCcEEEEEECC--CCC-ccEE
Confidence 122222 22223366789999999998 555 6999
Q ss_pred EEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcce-EEEEEEEEeeeeee----------------
Q psy2166 532 WFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD-VTKASLKCVSKTNL---------------- 594 (805)
Q Consensus 532 W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~---------------- 594 (805)
|+|||+.+..+.++.+..+++ .|.|.++..+|+|.|+|.|.|..|.. +..+.|.|...|..
T Consensus 322 W~~~g~~l~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~ 399 (642)
T 1e07_A 322 WWVNNQSLPVSPRLQLSNDNR--TLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNL 399 (642)
T ss_pred EEECCccCCCcCCEEEeCCCC--EEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcE
Confidence 999999998877777655443 69999999999999999999999875 45577877754421
Q ss_pred ee-----cCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEE--EEeecccc
Q psy2166 595 IL-----ESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL--KCVSKTNL 667 (805)
Q Consensus 595 ~~-----~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l--~V~~~p~~ 667 (805)
.+ +.|.|.++|+++|..+..+. .|.|.++..+|+|.|+|.|.|..|....+..+ .|...+
T Consensus 400 ~l~C~~~g~p~~~i~W~~~g~~~~~~~-----------~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~-- 466 (642)
T 1e07_A 400 SLSCHAASNPPAQYSWLIDGNIQQHTQ-----------ELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAEL-- 466 (642)
T ss_pred EEEEEcCccCCCeEEEEECCEEcCCCc-----------eEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccC--
Confidence 12 23677999999999886432 39999999999999999999999887766444 444321
Q ss_pred ccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeC
Q psy2166 668 ILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF 747 (805)
Q Consensus 668 ~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~ 747 (805)
.+|.|.. ..+. .+.+|+.++|.|.+. + |.+.++|+|+|..+..+.++.+..++
T Consensus 467 ----------------------~~p~i~~-~~~~-~v~~g~~v~l~C~~~--~-~~~~i~W~~~g~~l~~~~~~~~~~~~ 519 (642)
T 1e07_A 467 ----------------------PKPSISS-NNSK-PVEDKDAVAFTCEPE--A-QNTTYLWWVNGQSLPVSPRLQLSNGN 519 (642)
T ss_pred ----------------------CCceEec-CCce-eecCCCeEEEEEECC--C-CCcEEEEEECCEeCCCCCcEEEcCCC
Confidence 3566554 3345 789999999999997 5 88999999999999988888766554
Q ss_pred cEEEEEEcCCCCCCCEEEEEEEEcCCccEEE-EEEEEEEEeCCC--------------cceEEEeecccCCC
Q psy2166 748 GMVVLEILGTKIEDTGVYTCRATNKWGQAEI-SVNLECVVWSPS--------------QTKLVYSLFEVPQP 804 (805)
Q Consensus 748 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~-~~~l~V~~~~~~--------------~~~~~~~~~~~~~~ 804 (805)
+ .|.|.++..+|+|.|+|.|.|..|.... ++.|.|...|+. ...|.|.+.+.|.|
T Consensus 520 ~--~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p 589 (642)
T 1e07_A 520 R--TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSP 589 (642)
T ss_pred c--EEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEeccCCCC
Confidence 4 7999999999999999999999997654 689999865542 35788888888776
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-59 Score=556.33 Aligned_cols=588 Identities=17% Similarity=0.216 Sum_probs=123.7
Q ss_pred EEEEEEEEecCCce-ec-cc-------cCC-----CCc-hhhhhHHhhhhhhcCccccCCCCCC-------CCc-CCCeE
Q psy2166 12 TTSGTLKCLGQKDI-YL-ET-------QHP-----MGA-AGLEKVQEVEHALAGKYQRQPSGPE-------ETF-AKPVF 68 (805)
Q Consensus 12 ~~~~~l~~~~~~~~-~~-~~-------~~~-----~~~-~g~~~i~~~~~~d~g~y~c~~~~~~-------~~~-~~p~~ 68 (805)
..+++|.|.+...+ |. .. ... .+. .+.+.|.+++.+|+|.|+|.+.... .+. ..+.+
T Consensus 46 G~~vtL~C~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~C~~~~~~~~~~~~v~v~~~~~~~ 125 (772)
T 3v2a_R 46 NTTLQITCRGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPF 125 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCEEEEEeccCCeeeeCCCCCCccCCceeEEEcCCCcEEEEEEECCCcHhhCEeEEEEEcCCCEEEEEEEEECCCCCCc
Confidence 46789999887643 21 11 000 111 3467899999999999999765221 111 11112
Q ss_pred Ee---cCCCCceecCC--CcEEEEEEEecCCCCCceEEEEEC--CEecCCCC-ceEEEecCcEEEEEEcccccCCCeEEE
Q psy2166 69 IV---PLKPEFKLGEA--QPLHLEAQVEPKNDPNLKIEWIFN--GKPLELGS-RFKTTADFGFVTLDLTEVYDRDQGIYT 140 (805)
Q Consensus 69 ~~---~~~~~~~v~~G--~~v~L~C~~~~~~~p~~~v~W~k~--g~~i~~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 140 (805)
+. ..+..+.+.+| +.++|.|.+. .|.+.|+|+|+ +..+.... .+...... .|.|.+++.+|+|.|+
T Consensus 126 ~~~~~~~~~~~~v~~G~~~~v~L~C~~~---~p~~~v~w~~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~Y~ 199 (772)
T 3v2a_R 126 IASVSDQHGVVYITENKNKTVVIPCLGS---ISNLNVSLCARYPEKRFVPDGNRISWDSKK---GFTIPSYMISYAGMVF 199 (772)
T ss_dssp ------CEEEEEEESSCCCEEEECCCCS---CSSCCEEEEEETTTEEECCCSSSCEEETTT---EEEEEGGGTTTCSEEE
T ss_pred eEcCcccceeEEEecCCCCeEEEEccCC---CCCcEEEEEecCCCccccCCCceeecCCCC---CeEecCCChhhCeEEE
Confidence 11 12234678889 8899999997 47789999997 66655443 33332222 6999999999999999
Q ss_pred EEEEeCCeeEEEE-EEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCc
Q psy2166 141 CRAWNLAGETFTS-TTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGE 219 (805)
Q Consensus 141 C~a~n~~g~~~~~-~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~ 219 (805)
|.+.+..+..... ..+.+... .+|.+...+.....+.+|+
T Consensus 200 C~~~~~~~~~~s~~~~~~v~~~---------------------------------------~~~~v~~~~~~~~~v~~G~ 240 (772)
T 3v2a_R 200 CEAKINDESYQSIMYIVVVVGY---------------------------------------RIYDVVLSPSHGIELSVGE 240 (772)
T ss_dssp EEEEETTEEEECCEEEEEEECC---------------------------------------CEEEEEEECCSCEEEETTC
T ss_pred EEEEECCceEEEEEEEEEEecC---------------------------------------ccceeeeCCCCceEEecCC
Confidence 9999875543332 22333211 1233333333323478999
Q ss_pred eEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEE--------EEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEE
Q psy2166 220 IAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT--------VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 291 (805)
Q Consensus 220 ~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~--------~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~ 291 (805)
.++|.|.+.....+.+.+.|++++..+........ ........|.|.+++.+|+|.|+|.+.|..+..+..+
T Consensus 241 ~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~ 320 (772)
T 3v2a_R 241 KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNST 320 (772)
T ss_dssp CEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEE
T ss_pred cEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEE
Confidence 99999999644466789999999987655433221 1112346899999999999999999999988888888
Q ss_pred EEEEeccCCCCCCeEEecC--CCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCcEEEEEEccc
Q psy2166 292 NLECVDKSKGQPPKFTSHI--KSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYV 369 (805)
Q Consensus 292 ~l~v~~~~~~~~p~~~~~~--~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v 369 (805)
.|.|.. +|.+.... .....+.+|+.++|.|.+. +.|.+.+.|+++|..+.....+. ....|.|.++
T Consensus 321 ~l~V~~-----~p~~~~~~~~~~~~~v~~G~~v~l~C~~~--~~p~~~v~W~~~g~~l~~~~~~~-----~~~~L~i~~v 388 (772)
T 3v2a_R 321 FVRVHE-----KPFVAFGSGMESLVEATVGERVRIPAKYL--GYPPPEIKWYKNGIPLESNHTIK-----AGHVLTIMEV 388 (772)
T ss_dssp EEEEEC-----CCC------------------------------------------------------------------
T ss_pred EEEEeC-----CCeeEeccCCCCcEEEcCCCcEEEEEEEe--eeCCCeEEEEECCEeCCCCceEc-----cceeEEEecC
Confidence 888874 34333222 2223478999999999997 78889999999999886533221 2346999999
Q ss_pred CcCCceEEEEEEEeCceeeEEEE--EEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeeccee
Q psy2166 370 QSHDSGEYVCRAWNKYGEDFTRA--TIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVT 447 (805)
Q Consensus 370 ~~~d~G~Y~C~a~n~~g~~~~~~--~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (805)
..+|+|.|+|.|.|..|....+. .|.|.
T Consensus 389 ~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~-------------------------------------------------- 418 (772)
T 3v2a_R 389 SERDTGNYTVILTNPISKEKQSHVVSLVVY-------------------------------------------------- 418 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChhcCceEEEEEEECCcCeEEEEEEEEEEe--------------------------------------------------
Confidence 99999999999999988765443 34332
Q ss_pred eecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEec---CCCcccccCCCeEEEEEEEeeCC
Q psy2166 448 QLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQ---ISDVTQLKEGQSAHFEARLTPVT 524 (805)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~---~~~~~~v~~G~~v~L~C~v~~~g 524 (805)
.+|.+... .+.. .+.+|+.++|.|.+. +
T Consensus 419 ----------------------------------------------~~P~~~~~~~~~~~~-~~~~g~~~~l~C~~~--g 449 (772)
T 3v2a_R 419 ----------------------------------------------VPPQIGEKSLISPVD-SYQYGTTQTLTCTVY--A 449 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------cCCcccccccCCCcc-ccCCCCcEEEEeEec--c
Confidence 33333221 1111 278999999999998 6
Q ss_pred CCCcE-EEEEECCEE--------------------------------ccC-CCceEEEee--CCEEEEEEccCCCCCCEE
Q psy2166 525 DPDLV-VEWFYNGKK--------------------------------LPH-GHRYRTFHD--FGIVILDILYCYEENSGV 568 (805)
Q Consensus 525 ~p~~~-v~W~~~g~~--------------------------------l~~-~~~~~~~~~--~~~~~L~i~~v~~~d~G~ 568 (805)
.|.|. ++|++++.. +.. ..+..+... .....|.|.++ +|+|.
T Consensus 450 ~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~ 527 (772)
T 3v2a_R 450 IPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSAL 527 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeE
Confidence 78886 999997432 111 011111111 12346888765 79999
Q ss_pred EEEEEEcCCcceEEEEEEEEeeeeeeee--------------c-----CCCCeEEEEECCEEccCCCceEE---------
Q psy2166 569 YECRATNKYGSDVTKASLKCVSKTNLIL--------------E-----SQLPEVEWFYNGKKLPHGHRYRT--------- 620 (805)
Q Consensus 569 Y~C~a~n~~g~~~~~~~l~V~~~~~~~~--------------~-----~~~p~v~W~~~g~~l~~~~~~~~--------- 620 (805)
|+|.|.|..|.....+.|.|..++.+.+ . .|.|.+.|+|+|..+........
T Consensus 528 Y~C~a~N~~g~~~~~~~l~V~~~p~i~~~p~~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~ 607 (772)
T 3v2a_R 528 YKCEAVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLD 607 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEccccccceeEEEEEECCceeeccCCcccccCCceEEEEeccCCCCCCcEEEEcCCcccccccCccccccccccc
Confidence 9999999999998888888876554322 2 24579999999876643322111
Q ss_pred -----------EeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEE--EEEEEEeeccccccccccccccCCCCCCCCCC
Q psy2166 621 -----------FHDFGIVILDILYCYEENSGVYECRATNKYGSDVT--KASLKCVSKTNLILESQLPELRRQPAGVPDSE 687 (805)
Q Consensus 621 -----------~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~--~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~ 687 (805)
...++...|.|.++..+|+|.|+|.|.|..|.... ...|.|..
T Consensus 608 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~------------------------ 663 (772)
T 3v2a_R 608 TLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLE------------------------ 663 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccc------------------------
Confidence 11223456999999999999999999997655442 34555532
Q ss_pred CCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEE
Q psy2166 688 DGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTC 767 (805)
Q Consensus 688 ~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 767 (805)
..+|.|...+.+. .+.+|+.++|.|.+. |.|.|.|+|+|||..+..+.++.+..+. .+|.|.++..+|+|.|+|
T Consensus 664 -~~~P~~~~~~~~~-~v~~g~~~~l~C~~~--g~P~p~v~W~k~g~~l~~~~~~~~~~~~--~~L~I~~v~~~D~G~Y~C 737 (772)
T 3v2a_R 664 -RVAPTITGNLENQ-TTSIGESIEVSCTAS--GNPPPQIMWFKDNETLVEDSGIVLKDGN--RNLTIRRVRKEDEGLYTC 737 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -cCCCEeecCCCce-EEeCCCCEEEEEEeC--ccCCCeEEEEECCeECcCCCCeEEcCCC--cEEEECcCCHHHCEEEEE
Confidence 1578888888887 999999999999998 9999999999999999888776654433 489999999999999999
Q ss_pred EEEcCCccEEEEEEEEEEEe
Q psy2166 768 RATNKWGQAEISVNLECVVW 787 (805)
Q Consensus 768 ~a~N~~G~~~~~~~l~V~~~ 787 (805)
.|.|.+|.+..++.|+|...
T Consensus 738 ~a~N~~G~~~~~~~l~V~~~ 757 (772)
T 3v2a_R 738 QACSVLGCAKVEAFFIIEGA 757 (772)
T ss_dssp --------------------
T ss_pred EEEeCCcceeEEEEEEEECC
Confidence 99999999999999999764
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-48 Score=444.00 Aligned_cols=468 Identities=14% Similarity=0.136 Sum_probs=331.4
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCC---ceEEEEECCEecC--------------CCCceEEEe--cCcEEEEEEcccc
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPN---LKIEWIFNGKPLE--------------LGSRFKTTA--DFGFVTLDLTEVY 132 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~---~~v~W~k~g~~i~--------------~~~~~~~~~--~~~~~~L~I~~~~ 132 (805)
.+..+.+.+|+.++|.|.+. +.+. +.|.|+|++..+. ..+|+.+.. +++.++|.|.+++
T Consensus 6 ~P~~v~v~~G~~v~L~C~~~--~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~ 83 (585)
T 2ocw_A 6 GPEEVNSVEGNSVSITCYYP--PTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLS 83 (585)
T ss_pred CcceeEEecCCcEEEEEeCC--CCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCC
Confidence 34467899999999999998 3443 4899999986431 234666654 4567789999999
Q ss_pred cCCCeEEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccc
Q psy2166 133 DRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHL 212 (805)
Q Consensus 133 ~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 212 (805)
.+|+|.|+|.|.|..+.....+.|.|..++ .|...+...
T Consensus 84 ~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p-----------------------------------------~~~~~~~~~ 122 (585)
T 2ocw_A 84 QDDSGRYKCGLGINSRGLSFDVSLEVSQGP-----------------------------------------GLLNDTKVY 122 (585)
T ss_pred cccCEEEEEEcccCCCCceEEEEEEEecCc-----------------------------------------cccCCCccE
Confidence 999999999999988877777788876443 333333333
Q ss_pred cccCCCceEEEEEEEeeCCCCCeEEEEEECCEEcc----C---------CCcEEEEEEc---CeEEEEEcCCCCcccEEE
Q psy2166 213 SNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIE----A---------SHRIRTVHAF---GMVVLEILGTKIEDTGVY 276 (805)
Q Consensus 213 ~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~----~---------~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y 276 (805)
.+.+|+.+.|.|.+. .+.|.+.+.|+|++..+. . ..++.+...+ +...|.|.+++.+|+|.|
T Consensus 123 -~v~~G~~v~l~C~~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 200 (585)
T 2ocw_A 123 -TVDLGRTVTINCPFK-TENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQY 200 (585)
T ss_pred -EEEcCCCEEEEEEec-CCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEE
Confidence 478999999999984 245567899999876421 1 2333333322 245899999999999999
Q ss_pred EEEEEcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCC-cEEEEE-ECCEE---c-c--
Q psy2166 277 TCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE-LKVEWF-HNGKP---I-F-- 348 (805)
Q Consensus 277 ~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~-~~v~W~-~~g~~---l-~-- 348 (805)
+|.|.|..+.....+.|.|.. .+|.. ..+.+|+.+.|.|.+. ...|. +.+.|+ ++|.. + .
T Consensus 201 ~C~a~n~~g~~~~~~~l~V~~----~~p~~-------~~~~~G~~v~l~C~~~-~~~~~~~~~~w~~~~g~~~~~~~~~~ 268 (585)
T 2ocw_A 201 LCQAGDDSNSNKKNADLQVLK----PEPEL-------VYEDLRGSVTFHCALG-PEVANVAKFLCRQSSGENCDVVVNTL 268 (585)
T ss_pred EEEeccCCccccceEEEEEcc----CCCce-------eEEcCCCcEEEEEEcC-CCCCCceEEEEEeCCCCCcceEEeCC
Confidence 999999999888888888864 22222 1267899999999973 23333 789996 88832 1 1
Q ss_pred ------CCCceEEEEe--CcEEEEEEcccCcCCceEEEEEEEeCceeeE----EEEEEEEEecccccccCCChhHHHHHH
Q psy2166 349 ------HKNRVKMVSD--FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDF----TRATIKCFGKGGVYLDSLQPESLARIR 416 (805)
Q Consensus 349 ------~~~~~~~~~~--~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~----~~~~l~V~~~~~~~~~~~~p~~~~~~~ 416 (805)
...++.+... .+.+.|.|.++..+|+|.|+|.|.|..+... ..+.|.|..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~~------------------ 330 (585)
T 2ocw_A 269 GKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNE------------------ 330 (585)
T ss_pred CcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCccccCceeeEEEEEec------------------
Confidence 1234444332 4555799999999999999999999533331 566666643
Q ss_pred HhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCC
Q psy2166 417 ELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAP 496 (805)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P 496 (805)
+|
T Consensus 331 ------------------------------------------------------------------------------~p 332 (585)
T 2ocw_A 331 ------------------------------------------------------------------------------ES 332 (585)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 33
Q ss_pred ceEecCCCcccccCCCeEEEEEEEeeCCCCCcEE----EEEE--CCE--EccCCCceEEEeeCCEEEEEEccCCCCCCEE
Q psy2166 497 KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVV----EWFY--NGK--KLPHGHRYRTFHDFGIVILDILYCYEENSGV 568 (805)
Q Consensus 497 ~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v----~W~~--~g~--~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 568 (805)
.+...+... .+.+|+.++|.|.+. +.|.+.+ +|+| ||. .+...... + .
T Consensus 333 ~~~~~~~~~-~~~~G~~v~l~C~~~--~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~----------~-----~------ 388 (585)
T 2ocw_A 333 TIPRSPTVV-KGVAGSSVAVLCPYN--RKESKSIKYWCLWEGAQNGRCPLLVDSEGW----------V-----K------ 388 (585)
T ss_pred ccccCCcce-EEEeCCcEEEEEecC--CCCCccEEEEEEEEccCCCCCceeeeecce----------e-----e------
Confidence 333333333 378999999999998 6777766 7999 776 33221000 0 0
Q ss_pred EEEEEEcCCcceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEe--eCCEEEEEeccCCCCCcEEEEEEE
Q psy2166 569 YECRATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFH--DFGIVILDILYCYEENSGVYECRA 646 (805)
Q Consensus 569 Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~a 646 (805)
.....++.+.. .++...|.|.++..+|+|.|+|.|
T Consensus 389 -------------------------------------------~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a 425 (585)
T 2ocw_A 389 -------------------------------------------AQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT 425 (585)
T ss_pred -------------------------------------------cccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc
Confidence 00111122211 123445999999999999999999
Q ss_pred EeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeec--CCCCe
Q psy2166 647 TNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPV--GDQTM 724 (805)
Q Consensus 647 ~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~--g~p~~ 724 (805)
|..|.....+.|.|.. .+|.+.. +.+. .+.+|+.+.|.|.+... |.|.+
T Consensus 426 -n~~g~~~~~~~l~V~~--------------------------~~p~~~~-~~~~-~v~~G~~v~L~C~~~~~~~~~p~~ 476 (585)
T 2ocw_A 426 -NGDTLWRTTVEIKIIE--------------------------GEPNLKV-PGNV-TAVLGETLKVPCHFPCKFSSYEKY 476 (585)
T ss_pred -cCCCccceeEEEEEec--------------------------Ccccccc-CCce-eEecCCcEEEEEEecCCCCCCccE
Confidence 9999998999999975 3444443 5566 89999999999999521 67889
Q ss_pred EEEEEECCEEccCCCC------e-EEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEE-EEEEEEEEeC
Q psy2166 725 TVEFLYNGKPIEASHR------I-RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI-SVNLECVVWS 788 (805)
Q Consensus 725 ~v~W~~~g~~l~~~~~------~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~-~~~l~V~~~~ 788 (805)
.|+|+|+|..+..... + .+..++....|.|.++..+|+|.|+|.|.|.+|.... ++.|.|...|
T Consensus 477 ~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p 548 (585)
T 2ocw_A 477 WCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK 548 (585)
T ss_pred EEEEeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence 9999999988765421 2 2222344578999999999999999999999996654 4889998765
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-50 Score=450.72 Aligned_cols=455 Identities=14% Similarity=0.143 Sum_probs=311.5
Q ss_pred CCCcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEE
Q psy2166 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIY 139 (805)
Q Consensus 60 ~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y 139 (805)
..+..+|.+... ++.+.+.+|+.++|.|.+. + .|+|+|++..+. .++...+|.|.+++.+|+|.|
T Consensus 31 l~v~~pP~i~~~-~~~~~v~~G~~v~l~C~~~--~----~v~W~~~~~~~~--------~~~~~~~L~I~~~~~~D~G~Y 95 (524)
T 2ec8_A 31 PGEPSPPSIHPG-KSDLIVRVGDEIRLLCTDP--G----FVKWTFEILDET--------NENKQNEWITEKAEATNTGKY 95 (524)
T ss_dssp --CCCCCEEESC-CSEEECCTTSCEEEEEECT--T----EEEEEEESSSCC--------EEECSSEEEESSCCSTTCEEE
T ss_pred cCCCCCCccCCC-CceEEEeCCCeEEEEEeCC--c----eEEEcCCCcccc--------ccCccceEEEcccchhhCEEE
Confidence 344566766543 3478899999999999987 3 899999998762 112233899999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCc
Q psy2166 140 TCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGE 219 (805)
Q Consensus 140 ~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~ 219 (805)
+|.|.| |. .....|.|..++ .+...+... .+.+|+
T Consensus 96 ~C~a~n--g~-~~~~~l~V~~p~-----------------------------------------~~~~~~~~~-~v~~G~ 130 (524)
T 2ec8_A 96 TCTNKH--GL-SNSIYVFVRDPA-----------------------------------------KLFLVDRSL-YGKEDN 130 (524)
T ss_dssp EEEETT--SC-EEEEEEECCCSS-----------------------------------------CSBCCCCCC-CEETTS
T ss_pred EEeecC--Cc-ceEEEEEECCCC-----------------------------------------cccccccce-EEEcCC
Confidence 999998 43 555666664322 122222222 477999
Q ss_pred eEEEEEEEeeCCCCCeEEEEEE-CCEEccCCCcEEEEEEcCeEEEEEcCCCCcccE-EEEEEEEcCCeeEE-EEEEEEEe
Q psy2166 220 IAHFEASLIPVGDQTMTVEFLY-NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTG-VYTCRATNKWGQAE-ISVNLECV 296 (805)
Q Consensus 220 ~~~l~C~~~~~~~p~~~i~W~k-~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~n~~g~~~-~~~~l~v~ 296 (805)
.+.|.|.+ .+.+.+.+.||+ +|..+....++.... . ..|.|.+++.+|+| .|+|.+.|..+... ..+.|.|.
T Consensus 131 ~v~l~C~~--~~~~~~~v~W~~~~g~~l~~~~~~~~~~-~--~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~ 205 (524)
T 2ec8_A 131 DTLVRCPL--TDPEVTNYSLKGCQGKPLPKDLRFIPDP-K--AGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVR 205 (524)
T ss_dssp CEEECCCB--SCCCCSCEEEECSSSCCCCSSCEEEEET-T--TEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEE
T ss_pred eEEEECcC--CCCccceEEEEccCCcCcCCCCceeECC-C--ccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEE
Confidence 99999988 566678999998 888887666554332 2 26999999999999 99999998766542 35666665
Q ss_pred ccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcE-EEEEECCEEc--cCCCceEEE---EeCcEEEEEEcccC
Q psy2166 297 DKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELK-VEWFHNGKPI--FHKNRVKMV---SDFGFVVMDIAYVQ 370 (805)
Q Consensus 297 ~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~-v~W~~~g~~l--~~~~~~~~~---~~~~~~~l~i~~v~ 370 (805)
... ..+|.+...+.... +.+|+.++|.|.+. +.|.+. +.|++++..+ ....+..+. .......|.|.++.
T Consensus 206 ~~~-~~~p~i~~~~~~~~-v~~G~~v~L~C~~~--g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~ 281 (524)
T 2ec8_A 206 PAF-KAVPVVSVSKASYL-LREGEEFTVTCTIK--DVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSAR 281 (524)
T ss_dssp CCC-CSCCEEECSCSEEE-EETTSCEEEEEEEE--ESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCC
T ss_pred eCC-CCCCcEEecCCcce-EEcCCcEEEEEEEe--cCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCC
Confidence 211 15677776666554 88999999999998 667665 9999999874 322222221 11234579999999
Q ss_pred cCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeec
Q psy2166 371 SHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLK 450 (805)
Q Consensus 371 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (805)
.+|+|.|+|.|.|..|.....+.|.|..
T Consensus 282 ~~D~G~Y~C~a~n~~g~~~~~~~l~V~~---------------------------------------------------- 309 (524)
T 2ec8_A 282 VNDSGVFMCYANNTFGSANVTTTLEVVD---------------------------------------------------- 309 (524)
T ss_dssp TTTCEEEEEEEECSSCEEEEEEEEEEES----------------------------------------------------
T ss_pred HHHCEEEEEEEEecCCceEEEEEEEEec----------------------------------------------------
Confidence 9999999999999999988888888753
Q ss_pred CCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCC--CcccccCCCeEEEEEEEeeCCCCCc
Q psy2166 451 EGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQIS--DVTQLKEGQSAHFEARLTPVTDPDL 528 (805)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~--~~~~v~~G~~v~L~C~v~~~g~p~~ 528 (805)
+|.+...+. ....+.+|+.++|.|.+. |.|.|
T Consensus 310 --------------------------------------------~p~~~~~~~~~~~~~v~~G~~v~l~C~~~--g~P~p 343 (524)
T 2ec8_A 310 --------------------------------------------KGFINIFPMINTTVFVNDGENVDLIVEYE--AFPKP 343 (524)
T ss_dssp --------------------------------------------SCEEEEEESSCSEEEECTTCCEEEEEEEE--EESCC
T ss_pred --------------------------------------------cCceEeecCCCceEEEcCCCcEEEEEEEe--ecCCC
Confidence 333433322 233489999999999998 66777
Q ss_pred E-EEEEECCEEccCCC-ceEEEeeC----CEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeeeeeeeecCCCCe
Q psy2166 529 V-VEWFYNGKKLPHGH-RYRTFHDF----GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPE 602 (805)
Q Consensus 529 ~-v~W~~~g~~l~~~~-~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~ 602 (805)
. ++|+|+|..+.... ++....++ ....|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+|.+
T Consensus 344 ~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~i-------- 415 (524)
T 2ec8_A 344 EHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEI-------- 415 (524)
T ss_dssp CEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEE--------
T ss_pred cEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecCCeE--------
Confidence 8 99999999987654 34333333 3567999999999999999999998888777777777554431
Q ss_pred EEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCC
Q psy2166 603 VEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAG 682 (805)
Q Consensus 603 v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~ 682 (805)
T Consensus 416 -------------------------------------------------------------------------------- 415 (524)
T 2ec8_A 416 -------------------------------------------------------------------------------- 415 (524)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEcc-------C-CCC---eEEEeeCcEEE
Q psy2166 683 VPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIE-------A-SHR---IRTVHAFGMVV 751 (805)
Q Consensus 683 ~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~-------~-~~~---~~~~~~~~~~~ 751 (805)
...+ .+.+| .|.|.+. |+|.|.|+|+|+|..+. . +.+ +....++....
T Consensus 416 ------------~~~~----~~~~g---~l~C~~~--g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 474 (524)
T 2ec8_A 416 ------------LTYD----RLVNG---MLQCVAA--GFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVV 474 (524)
T ss_dssp ------------EEEE----CCSSS---CEEEEEE--EESCCEEECCCC----------CCCCCCCCCCC-CCSSSCEEE
T ss_pred ------------eecc----cCcCc---EEEEEEE--eecCCEEEEEECCCcccccccccCCCCceeeeeccCCCCcceE
Confidence 1100 12235 8999999 99999999999987652 1 111 11122222211
Q ss_pred -EEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEEeCCC
Q psy2166 752 -LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPS 790 (805)
Q Consensus 752 -L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 790 (805)
+.|.....+|+|.|+|.|.|.+|..+.++.|.|+.++..
T Consensus 475 ~s~l~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~e~~~~ 514 (524)
T 2ec8_A 475 QSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKE 514 (524)
T ss_dssp EEEECCCSCCC-----CEEECSSCEEECCCCCCC------
T ss_pred EEEEEEEEccCCEEEEEEEEcCCCceEEEEEEEEecCCHH
Confidence 234444569999999999999999999999999875544
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-47 Score=426.18 Aligned_cols=435 Identities=15% Similarity=0.146 Sum_probs=275.3
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTST 154 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~ 154 (805)
.++|.+|++++|.|.+. +.+...+.|++++..+....++... +.+..+|.|.+++.+|+|.|+|.|.|..+......
T Consensus 57 ~~~v~~g~~~~L~c~~~--~~~~~~~~W~~~~~~l~~~~~~~~~-~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~ 133 (527)
T 3qs9_E 57 AVEVDVSASITLQVLVD--APGNISCLWVFKHSSLNCQPHFDLQ-NRGVVSMVILKMTETQAGEYLLFIQSEATNYTILF 133 (527)
T ss_dssp EEEECSSCCEEEEEECS--CCSSCEEEEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEE
T ss_pred eEEEeccccEEEEEEEe--cCCceeEEEEecCCccCcccccCCC-cceEEEEEECcCChhhCeeEEEEEEeccccEEEEE
Confidence 58999999999999998 5677899999999988766555432 23456799999999999999999999888777666
Q ss_pred EEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCCC
Q psy2166 155 TIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQT 234 (805)
Q Consensus 155 ~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~ 234 (805)
.|.|... .... ...|. ....|+.+.|.|.+ .|.|.
T Consensus 134 ~v~v~~~--~~~~--------------------------------~~~p~---------~~~~~~~~~L~C~a--~G~P~ 168 (527)
T 3qs9_E 134 TVSIRNT--LLYT--------------------------------LRRPY---------FRKMENQDALVCIS--ESVPE 168 (527)
T ss_dssp EEEEC-------C--------------------------------EEEEE---------EEECSSSSCEEEEE--EESSC
T ss_pred EEEECCc--eeec--------------------------------cCCCc---------EEecCCceEEEEEE--ceecC
Confidence 6665411 1000 00111 12346677899988 78999
Q ss_pred eEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEE-EEEEEeccCCCCCCeEEecCCCc
Q psy2166 235 MTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS-VNLECVDKSKGQPPKFTSHIKSL 313 (805)
Q Consensus 235 ~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~-~~l~v~~~~~~~~p~~~~~~~~~ 313 (805)
|.|.|++++..+..... ............+..+|+|.|+|.|.|..|..... +.+.|... |.+ .+. .
T Consensus 169 P~i~W~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~-----p~~--~p~-~ 236 (527)
T 3qs9_E 169 PIVEWVLCDSQGESCKE----ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQT-----PQT--TLP-Q 236 (527)
T ss_dssp CEEEEEEC-----------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSC-----CCC--SCC-E
T ss_pred CeEEEEECCCCCccccc----cCCcEEEEeeeeccccCCEEEEEEEEeCCCcccceEEEEEEecc-----Ccc--CCC-c
Confidence 99999999876542211 11111122233445889999999999998887554 66666532 222 122 2
Q ss_pred ccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEE------eCcEEEEEEcccCcCCceEEEEEEEeCcee
Q psy2166 314 EGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVS------DFGFVVMDIAYVQSHDSGEYVCRAWNKYGE 387 (805)
Q Consensus 314 ~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~------~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~ 387 (805)
..+.+|+.+.|.|.+.+ +.|.+.|+|+++|..+.....+.... ......|.|.++..+|+|.|+|.|.|.
T Consensus 237 ~~v~~G~~v~L~C~~~~-g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~--- 312 (527)
T 3qs9_E 237 LFLKVGEPLWIRCKAVH-VNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH--- 312 (527)
T ss_dssp EEECTTSCEEEEEEEEE-SSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---
T ss_pred eEEeCCCeEEEEEEEcc-CCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---
Confidence 33889999999999953 78999999999999886554332211 112346999999999999999999987
Q ss_pred eEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCC
Q psy2166 388 DFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDP 467 (805)
Q Consensus 388 ~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (805)
....+.|.|..+
T Consensus 313 ~~~~~~L~V~~~-------------------------------------------------------------------- 324 (527)
T 3qs9_E 313 PSQSALVTIVEK-------------------------------------------------------------------- 324 (527)
T ss_dssp EEEEEEEEEC----------------------------------------------------------------------
T ss_pred CCceEEEEEEcc--------------------------------------------------------------------
Confidence 556667776432
Q ss_pred CceEEEeecccCCCCCCcccccCCCCCCCceEecC-CCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceE
Q psy2166 468 DLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQI-SDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR 546 (805)
Q Consensus 468 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~ 546 (805)
|.+...+ .....+.+|+.+.|.|.+. |.|.|.|+|+|||+.|..+.++.
T Consensus 325 ----------------------------p~i~~~~~~~~~~v~~G~~v~L~C~~~--g~P~p~i~W~k~g~~l~~~~~~~ 374 (527)
T 3qs9_E 325 ----------------------------GFINATNSSEDYEIDQYEEFCFSVRFK--AYPQIRCTWTFSRKSFPCEQKGL 374 (527)
T ss_dssp ----------------------------CEEECCCSCCEECCCTTCCCCEEEEEE--EESCCEEEEEETTEEEECBCCBC
T ss_pred ----------------------------CccccccCcccEEEcCCCeEEEEEEEE--ecCCCEEEEEECCEECcCCcccc
Confidence 3222221 1223478999999999999 67888999999999986554321
Q ss_pred EEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCE
Q psy2166 547 TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGI 626 (805)
Q Consensus 547 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~ 626 (805)
. ....|.|.+++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus 375 ~----~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~------------------------------------ 414 (527)
T 3qs9_E 375 D----NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRR------------------------------------ 414 (527)
T ss_dssp S----SSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--C------------------------------------
T ss_pred c----CCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEec------------------------------------
Confidence 1 112355666666666666666666555555544444443
Q ss_pred EEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCC
Q psy2166 627 VILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 706 (805)
Q Consensus 627 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~ 706 (805)
+|.|...+.
T Consensus 415 ----------------------------------------------------------------~P~i~~~~~------- 423 (527)
T 3qs9_E 415 ----------------------------------------------------------------KPQVLAEAS------- 423 (527)
T ss_dssp ----------------------------------------------------------------CCEEEECCC-------
T ss_pred ----------------------------------------------------------------CCeEEEeCC-------
Confidence 333322211
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEccCCCC-e----------EEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR-I----------RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~-~----------~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
| ..|.|.+. |+|.|.|+|++++........ . ..........+.|.-...+|+|.|+|.|.|.+|.
T Consensus 424 ~--~~l~C~a~--g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C~A~N~~G~ 499 (527)
T 3qs9_E 424 A--SQASCFSD--GYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGT 499 (527)
T ss_dssp C--E---EEEE--CSSCCEEEEECCC-----CCCCCCCCEEEC---------CEEEEECCCCCSSCSCEEEEEEECSSCE
T ss_pred C--CEEEEEEE--EEcCCeEEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEEcCCCEEEEEEEEeCCCC
Confidence 1 24799999 999999999998754421110 0 0011111222333333456999999999999999
Q ss_pred EEEEEEEEEEE
Q psy2166 776 AEISVNLECVV 786 (805)
Q Consensus 776 ~~~~~~l~V~~ 786 (805)
.+..+.|.|..
T Consensus 500 ~~~~~~L~V~~ 510 (527)
T 3qs9_E 500 SCETILLNSPG 510 (527)
T ss_dssp EEEEEEC----
T ss_pred ceeEEEEecCC
Confidence 99999997743
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-47 Score=424.47 Aligned_cols=467 Identities=14% Similarity=0.211 Sum_probs=310.3
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEECC--EecC------------CCCceEEEecCcEEEEEEcccccCCCe
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG--KPLE------------LGSRFKTTADFGFVTLDLTEVYDRDQG 137 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g--~~i~------------~~~~~~~~~~~~~~~L~I~~~~~~D~G 137 (805)
.++.+.+.+|+.++|.|.+. +.|.+.|.|+|++ ..+. ...|+....+++..+|.|.+++.+|+|
T Consensus 6 ~p~~~~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 83 (523)
T 2rcj_C 6 QPPSASGTPGQRVTISCTGT--SSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDES 83 (523)
T ss_pred cCCceEEecCCcEEEEEEEe--ccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhCE
Confidence 34467999999999999998 5788899999974 2211 135777666667789999999999999
Q ss_pred EEEEEEEeCCeeE---EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccc
Q psy2166 138 IYTCRAWNLAGET---FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSN 214 (805)
Q Consensus 138 ~Y~C~a~n~~g~~---~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 214 (805)
.|+|.|.|..|.. ...+.|.|...+ ..+|.+...+... .
T Consensus 84 ~Y~C~a~n~~g~~~~~~~~~~l~V~~~~-------------------------------------~~~P~~~~~~~~~-~ 125 (523)
T 2rcj_C 84 DYYCASWNSSDNSYVFGTGTKVTVLGQP-------------------------------------KANPTVTLFPPSS-E 125 (523)
T ss_pred EEEEEEccCCCccccccCceEEEeccCC-------------------------------------CcCCeEEecCCcc-c
Confidence 9999999976532 234556664221 1345555444443 3
Q ss_pred cCCCceEEEEEEEeeCCCCC--eEEEEEECCEEccCCCcEEEE--EEcC----eEEEEEcCCCCcccEEEEEEEEcCCee
Q psy2166 215 LSEGEIAHFEASLIPVGDQT--MTVEFLYNGKPIEASHRIRTV--HAFG----MVVLEILGTKIEDTGVYTCRATNKWGQ 286 (805)
Q Consensus 215 v~~g~~~~l~C~~~~~~~p~--~~i~W~k~g~~l~~~~~~~~~--~~~~----~~~L~i~~~~~~d~G~Y~C~~~n~~g~ 286 (805)
+.+|+.+.|.|.+ .+.|+ +.+.|+|+|..+.....+... ..++ .+.|.|.+++.+|+|.|+|.|.|..+.
T Consensus 126 ~~~g~~v~l~C~~--~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 203 (523)
T 2rcj_C 126 ELQANKATLVCLI--SDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGST 203 (523)
T ss_pred ccCCCceEEEEEe--ccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcc
Confidence 5689999999998 45543 599999999988755332211 1122 246999999999999999999998887
Q ss_pred EEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCc-EEEEEECCEEccCCCceEEEEeCc----E
Q psy2166 287 AEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPEL-KVEWFHNGKPIFHKNRVKMVSDFG----F 361 (805)
Q Consensus 287 ~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~~~~~~~~----~ 361 (805)
....+.+.+... ...+|.+....... .+.+|+.+.|.|.+.+ ..|.+ .|+|+++|..+.......+...++ .
T Consensus 204 ~~~~~~~~~~~~-~~~~P~v~~~~~~~-~~~~G~~~~l~C~~~g-~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~ 280 (523)
T 2rcj_C 204 VEKTVAPTECSA-STKGPSVFPLAPSS-KSTSGGTAALGCLVKD-YFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLS 280 (523)
T ss_pred cccceeeeecCC-CCcCCEEEecCCCc-ccccCCceEEEEEEec-eeCCCeEEEEecCCcccceEeCCcEecCCCcEEEE
Confidence 666555433211 11455555333333 3678999999999973 23766 899999998764321111111112 2
Q ss_pred EEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceee
Q psy2166 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFIT 441 (805)
Q Consensus 362 ~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (805)
..|.|.++..+| |.|+|.|.|..|.......+.|.
T Consensus 281 s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~-------------------------------------------- 315 (523)
T 2rcj_C 281 SVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPL-------------------------------------------- 315 (523)
T ss_pred EEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCC--------------------------------------------
Confidence 469999999999 99999999999987665555432
Q ss_pred eecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcc-cccCCCeEEEEEEE
Q psy2166 442 QISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVT-QLKEGQSAHFEARL 520 (805)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~-~v~~G~~v~L~C~v 520 (805)
..|.+....+... .+.+|+.++|.|.+
T Consensus 316 ----------------------------------------------------~~P~~~~~~p~~~~~v~~g~~~~l~C~~ 343 (523)
T 2rcj_C 316 ----------------------------------------------------SLPSVFLFPPKPKDTLMISRTPEVTCVV 343 (523)
T ss_pred ----------------------------------------------------cCceEEecCCCchhhcccCCceEEEEEE
Confidence 2243333222222 27889999999999
Q ss_pred eeCC--CCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeeeeeeeecC
Q psy2166 521 TPVT--DPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILES 598 (805)
Q Consensus 521 ~~~g--~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~ 598 (805)
.+.. .|.+.|+|+|||..+........ ...+.|.|..
T Consensus 344 ~g~~p~~~~~~v~W~k~g~~l~~~~~~~~--------------~~~~~g~~~~--------------------------- 382 (523)
T 2rcj_C 344 VDVSHEDPQVKFNWYVDGVQVHNAKTKPR--------------EQQYNSTYRV--------------------------- 382 (523)
T ss_pred ecccCCCCceEEEEEECCeEccCCccCCc--------------eecCCCcEEE---------------------------
Confidence 9422 12369999999998754421100 0011121111
Q ss_pred CCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeeccccccccccccccC
Q psy2166 599 QLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRR 678 (805)
Q Consensus 599 ~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~ 678 (805)
...|.|.++..+|+|.|+|.|.|..+.......|.+...
T Consensus 383 ---------------------------~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~-------------- 421 (523)
T 2rcj_C 383 ---------------------------VSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKG-------------- 421 (523)
T ss_pred ---------------------------EEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEcccC--------------
Confidence 112777777888888888888888776655544443100
Q ss_pred CCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCe--EEEEEECCEEccCCCCeEE-EeeCc----EEE
Q psy2166 679 QPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM--TVEFLYNGKPIEASHRIRT-VHAFG----MVV 751 (805)
Q Consensus 679 ~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~--~v~W~~~g~~l~~~~~~~~-~~~~~----~~~ 751 (805)
...+|.+...+.....+..| .++|.|.+. |.|++ .|+|+|||+++........ ...++ ...
T Consensus 422 ---------~~~~P~v~~~~~~~~~~~~~-~~~l~C~~~--g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~~~ 489 (523)
T 2rcj_C 422 ---------QPREPQVYTLPPSREEMTKN-QVSLTCLVK--GFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSK 489 (523)
T ss_pred ---------CCCCCEEEEeCCChHHccCC-ceEEEEEEE--eeECCCCEEEEEECCEECCCeeeccceeCCCCCEEEEEE
Confidence 01567766654443134444 599999999 76655 9999999999875433222 12223 234
Q ss_pred EEEcCCCCCCCEEEEEEEEcCCc
Q psy2166 752 LEILGTKIEDTGVYTCRATNKWG 774 (805)
Q Consensus 752 L~i~~v~~~d~G~Y~C~a~N~~G 774 (805)
|.|.....+|+|.|+|.|.|..-
T Consensus 490 l~v~~~~~~~~g~Y~C~a~n~~l 512 (523)
T 2rcj_C 490 LTVDKSRWQQGNVFSCSVMHEAL 512 (523)
T ss_pred EEEChHHccCCCeEEEEEEcCCc
Confidence 67777777899999999999764
|
| >3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-50 Score=475.80 Aligned_cols=551 Identities=16% Similarity=0.205 Sum_probs=120.3
Q ss_pred CCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEe--c-CcEEEEEEcccccCCCeEEE
Q psy2166 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTA--D-FGFVTLDLTEVYDRDQGIYT 140 (805)
Q Consensus 64 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~--~-~~~~~L~I~~~~~~D~G~Y~ 140 (805)
.+|.+... ++...|.+|++|+|.|... + .+.|++++.......++.+.. + ....+|.|.+++.+|+|.|+
T Consensus 30 ~~p~l~~~-~~~~~v~~G~~vtL~C~~~--~----~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~d~G~Y~ 102 (772)
T 3v2a_R 30 DLPRLSIQ-KDILTIKANTTLQITCRGQ--R----DLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYK 102 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCEECCC-CCeEEEcCCCCEEEEEecc--C----CeeeeCCCCCCccCCceeEEEcCCCcEEEEEEECCCcHhhCEeEE
Confidence 44554333 3367899999999999865 1 589998776555444554433 1 22458999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCC--
Q psy2166 141 CRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEG-- 218 (805)
Q Consensus 141 C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g-- 218 (805)
|.+.+ +.......|.|..+.... .+.+...+.. ..+.+|
T Consensus 103 C~~~~--~~~~~~~~v~v~~~~~~~------------------------------------~~~~~~~~~~-~~v~~G~~ 143 (772)
T 3v2a_R 103 CFYRE--TDLASVIYVYVQDYRSPF------------------------------------IASVSDQHGV-VYITENKN 143 (772)
T ss_dssp -------------------------------------------------------------------CEEE-EEEESSCC
T ss_pred EEEcC--CCEEEEEEEEECCCCCCc------------------------------------eEcCccccee-EEEecCCC
Confidence 99972 223334444443221100 0000111112 236789
Q ss_pred ceEEEEEEEeeCCCCCeEEEEEEC--CEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEE-EEEEE
Q psy2166 219 EIAHFEASLIPVGDQTMTVEFLYN--GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS-VNLEC 295 (805)
Q Consensus 219 ~~~~l~C~~~~~~~p~~~i~W~k~--g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~-~~l~v 295 (805)
+.++|.|.+ .+ |.+.+.|+++ |..+......... .....|.|.+++.+|+|.|+|.+.+........ ..+.+
T Consensus 144 ~~v~L~C~~--~~-p~~~v~w~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~~v 218 (772)
T 3v2a_R 144 KTVVIPCLG--SI-SNLNVSLCARYPEKRFVPDGNRISW--DSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV 218 (772)
T ss_dssp CEEEECCCC--SC-SSCCEEEEEETTTEEECCCSSSCEE--ETTTEEEEEGGGTTTCSEEEEEEEETTEEEECCEEEEEE
T ss_pred CeEEEEccC--CC-CCcEEEEEecCCCccccCCCceeec--CCCCCeEecCCChhhCeEEEEEEEECCceEEEEEEEEEE
Confidence 899999987 33 7789999997 6655433221111 122469999999999999999999865443322 23333
Q ss_pred eccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEE--------EeCcEEEEEEc
Q psy2166 296 VDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV--------SDFGFVVMDIA 367 (805)
Q Consensus 296 ~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~--------~~~~~~~l~i~ 367 (805)
... .++.+...+.....+.+|+.++|.|.+.+...+.+.+.|++++..+......... .......|.|.
T Consensus 219 ~~~---~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 295 (772)
T 3v2a_R 219 VGY---RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 295 (772)
T ss_dssp ECC---CEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEES
T ss_pred ecC---ccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEEC
Confidence 211 2334444444433488999999999998533667899999999876543322110 11234479999
Q ss_pred ccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeeccee
Q psy2166 368 YVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVT 447 (805)
Q Consensus 368 ~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (805)
++..+|+|.|+|.+.|..|.....+.|.|..+|
T Consensus 296 ~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p----------------------------------------------- 328 (772)
T 3v2a_R 296 GVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP----------------------------------------------- 328 (772)
T ss_dssp SCCSTTCSEEEEEEECSSCEEEEEEEEEEECCC-----------------------------------------------
T ss_pred cCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCC-----------------------------------------------
Confidence 999999999999999999988888888876433
Q ss_pred eecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecC--CCcccccCCCeEEEEEEEeeCCC
Q psy2166 448 QLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQI--SDVTQLKEGQSAHFEARLTPVTD 525 (805)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~--~~~~~v~~G~~v~L~C~v~~~g~ 525 (805)
.+.... .....+.+|+.++|.|.+. +.
T Consensus 329 -------------------------------------------------~~~~~~~~~~~~~v~~G~~v~l~C~~~--~~ 357 (772)
T 3v2a_R 329 -------------------------------------------------FVAFGSGMESLVEATVGERVRIPAKYL--GY 357 (772)
T ss_dssp -------------------------------------------------C------------------------------
T ss_pred -------------------------------------------------eeEeccCCCCcEEEcCCCcEEEEEEEe--ee
Confidence 221111 1223378999999999999 67
Q ss_pred CCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceE--EEEEEEEeeeeeee--------
Q psy2166 526 PDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDV--TKASLKCVSKTNLI-------- 595 (805)
Q Consensus 526 p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~--~~~~l~V~~~~~~~-------- 595 (805)
|.+.++|+|+|..+....++. ....|.|.++..+|+|.|+|.|.|..|... ..+.|.|..+|.+.
T Consensus 358 p~~~v~W~~~g~~l~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~ 432 (772)
T 3v2a_R 358 PPPEIKWYKNGIPLESNHTIK-----AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPV 432 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCeEEEEECCEeCCCCceEc-----cceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCc
Confidence 888999999999987643322 234699999999999999999999998764 45566666555431
Q ss_pred ----------ec-----CCCCe-EEEEECCEE--------------------------------ccC-CCceEEEee--C
Q psy2166 596 ----------LE-----SQLPE-VEWFYNGKK--------------------------------LPH-GHRYRTFHD--F 624 (805)
Q Consensus 596 ----------~~-----~~~p~-v~W~~~g~~--------------------------------l~~-~~~~~~~~~--~ 624 (805)
+. .|.|. +.|++++.. +.. ..++.+... .
T Consensus 433 ~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~ 512 (772)
T 3v2a_R 433 DSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNK 512 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcce
Confidence 11 24565 999997432 111 111111111 1
Q ss_pred CEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCccccc
Q psy2166 625 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNL 704 (805)
Q Consensus 625 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v 704 (805)
....|.|.++ +|+|.|+|.|.|..|.....+.|.|.. +|.|...+. . .+
T Consensus 513 ~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~~l~V~~---------------------------~p~i~~~p~-~-~~ 561 (772)
T 3v2a_R 513 TVSTLVIQAA--NVSALYKCEAVNKVGRGERVISFHVTR---------------------------GPEITLQPD-M-QP 561 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEEeec--ccCeEEEEEEEccccccceeEEEEEEC---------------------------CceeeccCC-c-cc
Confidence 1245777776 799999999999999999998888874 455554443 2 57
Q ss_pred CCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEE--------------------EeeCcEEEEEEcCCCCCCCEE
Q psy2166 705 SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT--------------------VHAFGMVVLEILGTKIEDTGV 764 (805)
Q Consensus 705 ~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~--------------------~~~~~~~~L~i~~v~~~d~G~ 764 (805)
.+|+.+.|.|.+. |.|.+.|+|+|+|..+........ ....+...|.|.++..+|+|.
T Consensus 562 ~~G~~v~l~C~~~--~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 639 (772)
T 3v2a_R 562 TEQESVSLWCTAD--RSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGD 639 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCceEEEEecc--CCCCCCcEEEEcCCcccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcE
Confidence 8999999999998 999999999999977654322211 111224569999999999999
Q ss_pred EEEEEEcCCccEE--EEEEEEEEEe-CC--------------CcceEEEeecccCCC
Q psy2166 765 YTCRATNKWGQAE--ISVNLECVVW-SP--------------SQTKLVYSLFEVPQP 804 (805)
Q Consensus 765 Y~C~a~N~~G~~~--~~~~l~V~~~-~~--------------~~~~~~~~~~~~~~~ 804 (805)
|+|.|.|..|... ..+.|.|.+. +| ....|.|.+.+.|.|
T Consensus 640 Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p 696 (772)
T 3v2a_R 640 YVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPP 696 (772)
T ss_dssp ---------------------------------------------------------
T ss_pred EEEEEEeCCCCeEEEEEEeecccccCCCEeecCCCceEEeCCCCEEEEEEeCccCCC
Confidence 9999999776544 3455666432 22 134467777777765
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=406.85 Aligned_cols=402 Identities=14% Similarity=0.106 Sum_probs=280.0
Q ss_pred ccCCCceEEEEEEEeeCCCCCeEE-----EEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEE
Q psy2166 214 NLSEGEIAHFEASLIPVGDQTMTV-----EFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 288 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~p~~~i-----~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~ 288 (805)
.+.+|+.++|.|.+ .+ |.+.+ .|+|++..+... + ...|.|.+++. |+| |+|.+.+..+..+
T Consensus 10 ~v~~G~~v~L~C~~--~g-p~p~~~~~~~~w~k~~~~~~~~-~--------~~~l~i~~v~~-d~g-Y~C~a~~~~~~~~ 75 (450)
T 1z7z_I 10 ILPRGGSVLVTCST--SC-DQPMLLGIETPLPKKELLLPGN-N--------RKVYELSNVQE-DSQ-PMCYSNCPDGQST 75 (450)
T ss_dssp EEETTEEEEEEEEC--CS-SCCCEEEECSSSCEEECCSSTT-T--------EEEEEEEEECS-CBC-CEEEEEETTEEEE
T ss_pred EEecCCcEEEEEEc--cC-CCcccccccceeeecceEecCC-C--------ceEEEEEeccc-CCe-eEEEEeCCCCcce
Confidence 47899999999998 56 77888 999988755432 2 23688999987 999 9999988777778
Q ss_pred EEEEEEEeccCCCCCCeEE-ecCCCcccccCCCeEEEEEEEeecCCCCc---EEEEEECCEEccCCCceEEEEeCcEEEE
Q psy2166 289 ISVNLECVDKSKGQPPKFT-SHIKSLEGLKDGDSAHFECTLTPVNDPEL---KVEWFHNGKPIFHKNRVKMVSDFGFVVM 364 (805)
Q Consensus 289 ~~~~l~v~~~~~~~~p~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~p~~---~v~W~~~g~~l~~~~~~~~~~~~~~~~l 364 (805)
..+.|.|.. +|.+. ..+.+.. +.+|+.+.|.|.+. +.|.+ .|+|+|+|..+....... ......|
T Consensus 76 ~~~~l~V~~-----~P~~~~~~~~~~~-v~~G~~v~L~C~~~--g~~~~~~~~v~W~k~g~~l~~~~~~~---~~~~~~L 144 (450)
T 1z7z_I 76 AKTFLTVYW-----TPERVELAPLPSW-QPVGKNLTLRCQVE--GGAPRANLTVVLLRGEKELKREPAVG---EPAEVTT 144 (450)
T ss_dssp EECEEEEEB-----CCSEEEECCCCSE-ECTTSEEEEEEEEE--CCBCGGGEEEEEEETTEEEEEEECCT---TTEEEEE
T ss_pred eEEEEEEEe-----CCCcceecCCCce-EeeCCeEEEEEEec--CCCCCcCcEEEEeeCCEEeecccccc---cccceEE
Confidence 888888874 44444 4444443 88999999999998 77777 999999999886432111 2234479
Q ss_pred EEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeec
Q psy2166 365 DIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQIS 444 (805)
Q Consensus 365 ~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (805)
.|.++..+|+|.|+|.|.|..|.......+.+.......+
T Consensus 145 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v---------------------------------------- 184 (450)
T 1z7z_I 145 TVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQT---------------------------------------- 184 (450)
T ss_dssp EEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEE----------------------------------------
T ss_pred EEEeeccccCceEEEEEEcccCCCCceEEeeccCccceee----------------------------------------
Confidence 9999999999999999999876433222111110000000
Q ss_pred ceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCC
Q psy2166 445 DVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT 524 (805)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g 524 (805)
......+|.+..+ ..+.+|+.++|.|.+. |
T Consensus 185 --------------------------------------------~~~~~~~p~~~~~----~~v~~G~~v~l~C~~~--g 214 (450)
T 1z7z_I 185 --------------------------------------------FVLPATPPQLVSP----RVLEVDTQGTVVCSLD--G 214 (450)
T ss_dssp --------------------------------------------CCCCSSCCEEECC----SEEETTSEEEEEEEEE--S
T ss_pred --------------------------------------------eccCCCCCEecCc----eeEEeCCcEEEEEEee--C
Confidence 0000234544332 3488999999999999 5
Q ss_pred C-C--CcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCE--EEEEEEEcCCcceEEEEEEEEee--eeeee--
Q psy2166 525 D-P--DLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSG--VYECRATNKYGSDVTKASLKCVS--KTNLI-- 595 (805)
Q Consensus 525 ~-p--~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G--~Y~C~a~n~~g~~~~~~~l~V~~--~~~~~-- 595 (805)
. | .+.++|+++|..+.. ++....+.....+.+ +++.+|+| .|+|.|.|..|.....+.|.|.. ++.+.
T Consensus 215 ~~P~~~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~ 291 (450)
T 1z7z_I 215 LFPVSEAQVHLALGDQRLNP--TVTYGNDSFSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT 291 (450)
T ss_dssp CTTGGGCEEEEEETTEECCC--EEEEETTEEEEEEEE-ECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEES
T ss_pred CCCCCceEEEEeCCCEeCCc--eEEecCCceeEEEEE-EeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecC
Confidence 5 6 789999999999866 232222211112233 67899999 99999999999999899998886 33221
Q ss_pred -----------ec---CCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCc----ceEEEE
Q psy2166 596 -----------LE---SQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG----SDVTKA 657 (805)
Q Consensus 596 -----------~~---~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g----~~~~~~ 657 (805)
+. .|.|.++| +|.++... +....|.|..+..+|+|.|+|.|.|..+ .....+
T Consensus 292 ~~~v~~G~~v~l~C~~~p~p~i~W--~g~~~~~~--------~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~ 361 (450)
T 1z7z_I 292 KPEVSEGTEVTVKCEAHPRAKVTL--NGVPAQPL--------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTR 361 (450)
T ss_dssp CSEEETTCEEEEEEEC--------------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred CeeEeCCCcEEEEEecCCCCEeEE--CCEEcCCC--------CceEEEEEecCcccCCceEEEEEEcCCCCcccccceeE
Confidence 11 16679999 88777221 1122499999999999999999997665 334677
Q ss_pred EEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecC--CcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEc
Q psy2166 658 SLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEF--QHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI 735 (805)
Q Consensus 658 ~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~--~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l 735 (805)
.|.|..+| .|...+ .+. .+.+|+.+.|.|.+. |+|.|.|+|+|+|..+
T Consensus 362 ~l~V~~~P---------------------------~~~~~~~p~~~-~~~~g~~~~l~C~~~--g~P~p~i~W~~~g~~~ 411 (450)
T 1z7z_I 362 ELRVLYGP---------------------------RLDERDCPGNW-TWPENSQQTPMCQAW--GNPLPELKCLKDGTFP 411 (450)
T ss_dssp ECEEEEEE---------------------------ECCSTTSCSEE-EEETTCEECCCCCCE--EESCCEEEEEETTTEE
T ss_pred EEEEecCC---------------------------ceeeccCCCce-eEcCCCeEEEEEecc--cCCCCcEEEEECCccc
Confidence 88887544 333322 455 789999999999998 9999999999999854
Q ss_pred cCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 736 EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 736 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
.+... .| +++.+|+|.|+|.|.|.+|..+.++.|.|+.
T Consensus 412 ~~~g~----------~~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 449 (450)
T 1z7z_I 412 LPIGE----------SV---TVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449 (450)
T ss_dssp CCTTS----------CE---ECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CCCCC----------eE---eEehhhCeEEEEEEEeCCCceeEEEEEEEEc
Confidence 43322 12 5888999999999999999999999999964
|
| >1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-43 Score=386.09 Aligned_cols=395 Identities=16% Similarity=0.156 Sum_probs=276.3
Q ss_pred CCceecCCCcEEEEEEEecCCCCCceE-----EEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCe
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDPNLKI-----EWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAG 148 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p~~~v-----~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g 148 (805)
....+.+|+.++|.|.+. + |.+.+ .|+|++..+.. .+ ...|.|.+++. |+| |+|.|.+..+
T Consensus 7 ~~~~v~~G~~v~L~C~~~--g-p~p~~~~~~~~w~k~~~~~~~-~~--------~~~l~i~~v~~-d~g-Y~C~a~~~~~ 72 (450)
T 1z7z_I 7 SKVILPRGGSVLVTCSTS--C-DQPMLLGIETPLPKKELLLPG-NN--------RKVYELSNVQE-DSQ-PMCYSNCPDG 72 (450)
T ss_dssp SEEEEETTEEEEEEEECC--S-SCCCEEEECSSSCEEECCSST-TT--------EEEEEEEEECS-CBC-CEEEEEETTE
T ss_pred CceEEecCCcEEEEEEcc--C-CCcccccccceeeecceEecC-CC--------ceEEEEEeccc-CCe-eEEEEeCCCC
Confidence 367899999999999998 5 77888 99999875542 22 23799999987 999 9999988777
Q ss_pred eEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEe
Q psy2166 149 ETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLI 228 (805)
Q Consensus 149 ~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~ 228 (805)
.....+.|.|..++.. +...+.+. .+.+|+.+.|.|.+
T Consensus 73 ~~~~~~~l~V~~~P~~----------------------------------------~~~~~~~~-~v~~G~~v~L~C~~- 110 (450)
T 1z7z_I 73 QSTAKTFLTVYWTPER----------------------------------------VELAPLPS-WQPVGKNLTLRCQV- 110 (450)
T ss_dssp EEEEECEEEEEBCCSE----------------------------------------EEECCCCS-EECTTSEEEEEEEE-
T ss_pred cceeEEEEEEEeCCCc----------------------------------------ceecCCCc-eEeeCCeEEEEEEe-
Confidence 7777788888653321 11222222 47899999999998
Q ss_pred eCCCCCe---EEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEE--------EEEEEEEec
Q psy2166 229 PVGDQTM---TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE--------ISVNLECVD 297 (805)
Q Consensus 229 ~~~~p~~---~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~--------~~~~l~v~~ 297 (805)
.+.|.+ .|.|+|+|..+...... .......|.|.++..+|+|.|+|.|.|..|... ....+.|..
T Consensus 111 -~g~~~~~~~~v~W~k~g~~l~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~ 186 (450)
T 1z7z_I 111 -EGGAPRANLTVVLLRGEKELKREPAV---GEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFV 186 (450)
T ss_dssp -ECCBCGGGEEEEEEETTEEEEEEECC---TTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECC
T ss_pred -cCCCCCcCcEEEEeeCCEEeeccccc---ccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeec
Confidence 566666 99999999988643211 122245899999999999999999999865321 223444432
Q ss_pred cCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCC-C--CcEEEEEECCEEccCCCceEEEEeCcEEEEE-EcccCcCC
Q psy2166 298 KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVND-P--ELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD-IAYVQSHD 373 (805)
Q Consensus 298 ~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-p--~~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~-i~~v~~~d 373 (805)
.+ ..+|.+... ..+.+|+.++|.|.+. +. | .+.+.|+++|..+.. ++.. ......+. ..++..+|
T Consensus 187 ~~-~~~p~~~~~----~~v~~G~~v~l~C~~~--g~~P~~~~~~~W~~~~~~~~~--~~~~--~~~~~~~~~~~~v~~~d 255 (450)
T 1z7z_I 187 LP-ATPPQLVSP----RVLEVDTQGTVVCSLD--GLFPVSEAQVHLALGDQRLNP--TVTY--GNDSFSAKASVSVTAED 255 (450)
T ss_dssp CC-SSCCEEECC----SEEETTSEEEEEEEEE--SCTTGGGCEEEEEETTEECCC--EEEE--ETTEEEEEEEEECCGGG
T ss_pred cC-CCCCEecCc----eeEEeCCcEEEEEEee--CCCCCCceEEEEeCCCEeCCc--eEEe--cCCceeEEEEEEeEhhh
Confidence 21 133444321 2388999999999998 55 6 789999999999865 2222 22222221 22678999
Q ss_pred ce--EEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecC
Q psy2166 374 SG--EYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKE 451 (805)
Q Consensus 374 ~G--~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (805)
+| .|+|.|.|..|.....+.|.|...
T Consensus 256 ~G~~~Y~C~a~n~~g~~~~~~~l~V~~~---------------------------------------------------- 283 (450)
T 1z7z_I 256 EGTQRLTCAVILGNQSQETLQTVTIYSF---------------------------------------------------- 283 (450)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEECC----------------------------------------------------
T ss_pred CCcEEEEEEEccCCccEEEEEEEEEecC----------------------------------------------------
Confidence 99 999999999999888888887632
Q ss_pred CceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEE
Q psy2166 452 GQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVE 531 (805)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~ 531 (805)
.+|.+... .. .+.+|+.++|.|.+. |.|.++
T Consensus 284 ------------------------------------------~~p~i~~~--~~-~v~~G~~v~l~C~~~----p~p~i~ 314 (450)
T 1z7z_I 284 ------------------------------------------PAPNVILT--KP-EVSEGTEVTVKCEAH----PRAKVT 314 (450)
T ss_dssp ------------------------------------------CCCEEEES--CS-EEETTCEEEEEEEC-----------
T ss_pred ------------------------------------------CCCeEecC--Ce-eEeCCCcEEEEEecC----CCCEeE
Confidence 12444432 22 488999999999986 777999
Q ss_pred EEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCc----ceEEEEEEEEeeeeeeee-----------
Q psy2166 532 WFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG----SDVTKASLKCVSKTNLIL----------- 596 (805)
Q Consensus 532 W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g----~~~~~~~l~V~~~~~~~~----------- 596 (805)
| +|.++... +....|.|..+..+|+|.|+|.|.|..| .....+.|.|..+|.+..
T Consensus 315 W--~g~~~~~~--------~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~~~~~ 384 (450)
T 1z7z_I 315 L--NGVPAQPL--------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPE 384 (450)
T ss_dssp -------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSEEEEET
T ss_pred E--CCEEcCCC--------CceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceeeccCCCceeEcC
Confidence 9 88877221 1223599999999999999999997665 334678888887765422
Q ss_pred -----------cCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEee
Q psy2166 597 -----------ESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVS 663 (805)
Q Consensus 597 -----------~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 663 (805)
+.|.|.+.|+|+|..+..++.. + .++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus 385 g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~g~~----------~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 449 (450)
T 1z7z_I 385 NSQQTPMCQAWGNPLPELKCLKDGTFPLPIGES----------V---TVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449 (450)
T ss_dssp TCEECCCCCCEEESCCEEEEEETTTEECCTTSC----------E---ECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CCeEEEEEecccCCCCcEEEEECCcccCCCCCe----------E---eEehhhCeEEEEEEEeCCCceeEEEEEEEEc
Confidence 1367799999999744332211 2 5788999999999999999999999999974
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-43 Score=378.99 Aligned_cols=369 Identities=22% Similarity=0.393 Sum_probs=266.6
Q ss_pred CCCeEEecCCCCcee---cCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEccc-ccCCCeEE
Q psy2166 64 AKPVFIVPLKPEFKL---GEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEV-YDRDQGIY 139 (805)
Q Consensus 64 ~~p~~~~~~~~~~~v---~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~-~~~D~G~Y 139 (805)
.+|.|+..+. .+.+ .+|+.++|.|.+. |.|.|.|+|+|||..+..+..+.+...++ +|.|.++ +.+|+|.|
T Consensus 4 ~~P~f~~~P~-~~~~~~~~eg~~v~L~C~~~--g~P~p~i~W~k~g~~l~~~~~~~~~~~~g--~l~i~~~~~~~D~G~Y 78 (384)
T 3kld_A 4 SGPVFVQEPS-HVMFPLDSEEKKVKLSCEVK--GNPKPHIRWKLNGTDVDIGMDFRYSVVDG--SLLINNPNKTQDAGTY 78 (384)
T ss_dssp EEEEEEECCC-CEEEETTCSCSEEEECCEEE--EESCCEEEEEETTEECCC----CEEEETT--EEEEESCCHHHHCEEE
T ss_pred CCCEEEeCCc-ceEeecCCCCCeEEEEeEec--CCCCCEEEEEECCEECcCCCCccEEEECC--EEEEcCCCCcccCEEE
Confidence 3578877765 4444 5899999999998 68999999999999997654333333333 5667665 88999999
Q ss_pred EEEEEeCCeeEEE-EEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCC
Q psy2166 140 TCRAWNLAGETFT-STTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEG 218 (805)
Q Consensus 140 ~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g 218 (805)
+|.|.|..|.... ...+.|...+. +.........+.+|
T Consensus 79 ~C~A~N~~G~~~s~~~~l~v~~~~~-----------------------------------------~~~~~~~~~~v~~G 117 (384)
T 3kld_A 79 QCIATNSFGTIVSREAKLQFAYLEN-----------------------------------------FKTRTRSTVSVRRG 117 (384)
T ss_dssp EEEEEETTEEEECCCEEEEEEEECC-----------------------------------------CSCCCCCCEEEEET
T ss_pred EEEEEcCcccEEecceEEEEecccc-----------------------------------------cccCCCCceeEEcC
Confidence 9999999987543 44555533221 11111122247789
Q ss_pred ceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEE---EEEEE
Q psy2166 219 EIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS---VNLEC 295 (805)
Q Consensus 219 ~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~---~~l~v 295 (805)
+.+.|.|... .+.|.+.+.|++++..+....+...... ...|.|.+++.+|+|.|+|.|.|..+..... ..+.+
T Consensus 118 ~~~~l~C~~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v 194 (384)
T 3kld_A 118 QGMVLLCGPP-PHSGELSYAWIFNEYPSYQDNRRFVSQE--TGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLIL 194 (384)
T ss_dssp CCEEECCCCC-SEESCEEEEEEETTEECCCSSSEEECTT--TCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEE
T ss_pred CCeEEecCCC-CCCCCeEEEEEECCCCCEeeccEEEEcC--CCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEE
Confidence 9999999642 2456789999999998765544333222 2369999999999999999999987654321 11221
Q ss_pred ec--cCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEEC-CEEccCCCceEEEEeCcEEEEEEcccCcC
Q psy2166 296 VD--KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHN-GKPIFHKNRVKMVSDFGFVVMDIAYVQSH 372 (805)
Q Consensus 296 ~~--~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~-g~~l~~~~~~~~~~~~~~~~l~i~~v~~~ 372 (805)
.. .....+|.+.........+.+|+.+.|.|.+. +.|.|.+.|+++ +..+....+ ... ....|.|.++..+
T Consensus 195 ~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~--g~P~p~i~W~k~~~~~~~~~~~--~~~--~~~~L~I~~v~~~ 268 (384)
T 3kld_A 195 RNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFAL--GNPVPTILWRRADGKPIARKAR--RHK--SNGILEIPNFQQE 268 (384)
T ss_dssp EEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEE--EESCCEEEEEETTCCCCCTTCE--ECT--TSCEEEECSCCGG
T ss_pred ccCCcccccCCceeecCCCceEecCCCcEEEEEEEe--ecCCCcEEEEeCCCccccccce--ecC--CCcEEEECCCChh
Confidence 10 00112334443333333478999999999998 889999999995 555543221 111 2236999999999
Q ss_pred CceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCC
Q psy2166 373 DSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEG 452 (805)
Q Consensus 373 d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (805)
|+|.|+|.|.|..|.....+.|.|..
T Consensus 269 D~G~Y~C~a~N~~G~~~~~~~l~v~~------------------------------------------------------ 294 (384)
T 3kld_A 269 DAGSYECVAENSRGKNVAKGQLTFYA------------------------------------------------------ 294 (384)
T ss_dssp GCEEEEEEEEETTEEEEEEEEEEEEE------------------------------------------------------
T ss_pred hCEEEEEEEEcCCCeEEEEEEEEEec------------------------------------------------------
Confidence 99999999999999998888888753
Q ss_pred ceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEE
Q psy2166 453 QSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEW 532 (805)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W 532 (805)
+|.+...+.+.. +.+|+.+.|.|.+. |.|.|.|+|
T Consensus 295 ------------------------------------------~P~~~~~~~~~~-v~~g~~v~l~C~~~--g~P~p~i~W 329 (384)
T 3kld_A 295 ------------------------------------------QPNWVQIINDIH-VAMEESVFWECKAN--GRPKPTYRW 329 (384)
T ss_dssp ------------------------------------------EEEEEECCCCEE-ECTTCCEEEECEEE--EESCCEEEE
T ss_pred ------------------------------------------CCccccCCCceE-ecCCCCEEEEeECC--ccCCCeEEE
Confidence 344544444443 88999999999999 678899999
Q ss_pred EECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEee
Q psy2166 533 FYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVS 590 (805)
Q Consensus 533 ~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 590 (805)
+|||.+|..+.++.+. ++ .|.|.++..+|+|.|+|.|.|..|....++.|.|.+
T Consensus 330 ~k~g~~l~~~~~~~~~--~~--~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~~ 383 (384)
T 3kld_A 330 LKNGDPLLTRDRIQIE--QG--TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIA 383 (384)
T ss_dssp EETTEECCCBTTEEEE--TT--EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred EECCEECCCCccEEEe--CC--EEEEeecChhhCEEEEEEEEeCCceEEeceEEEEec
Confidence 9999999887777643 23 599999999999999999999999999999999864
|
| >3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=380.36 Aligned_cols=372 Identities=25% Similarity=0.387 Sum_probs=267.8
Q ss_pred CCCceecccccccc--cCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCC-CCcccEEEE
Q psy2166 201 RPPQFTSEFQHLSN--LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGT-KIEDTGVYT 277 (805)
Q Consensus 201 ~~p~~~~~~~~~~~--v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~ 277 (805)
.+|.|...|.+... ..+|+.+.|.|.+ .|.|.|+|+|+|+|..+......+....++ .|.|.+. +.+|+|.|+
T Consensus 4 ~~P~f~~~P~~~~~~~~~eg~~v~L~C~~--~g~P~p~i~W~k~g~~l~~~~~~~~~~~~g--~l~i~~~~~~~D~G~Y~ 79 (384)
T 3kld_A 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEV--KGNPKPHIRWKLNGTDVDIGMDFRYSVVDG--SLLINNPNKTQDAGTYQ 79 (384)
T ss_dssp EEEEEEECCCCEEEETTCSCSEEEECCEE--EEESCCEEEEEETTEECCC----CEEEETT--EEEEESCCHHHHCEEEE
T ss_pred CCCEEEeCCcceEeecCCCCCeEEEEeEe--cCCCCCEEEEEECCEECcCCCCccEEEECC--EEEEcCCCCcccCEEEE
Confidence 56788887776642 2589999999998 688999999999999997654443344444 4666665 789999999
Q ss_pred EEEEcCCeeEE-EEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEE
Q psy2166 278 CRATNKWGQAE-ISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV 356 (805)
Q Consensus 278 C~~~n~~g~~~-~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~ 356 (805)
|.|.|..|... ....+.+... +.+.........+.+|+.+.|.|.... +.|.+.+.|++++.++....+..+.
T Consensus 80 C~A~N~~G~~~s~~~~l~v~~~-----~~~~~~~~~~~~v~~G~~~~l~C~~~~-~~~~~~~~W~~~~~~~~~~~~~~~~ 153 (384)
T 3kld_A 80 CIATNSFGTIVSREAKLQFAYL-----ENFKTRTRSTVSVRRGQGMVLLCGPPP-HSGELSYAWIFNEYPSYQDNRRFVS 153 (384)
T ss_dssp EEEEETTEEEECCCEEEEEEEE-----CCCSCCCCCCEEEEETCCEEECCCCCS-EESCEEEEEEETTEECCCSSSEEEC
T ss_pred EEEEcCcccEEecceEEEEecc-----cccccCCCCceeEEcCCCeEEecCCCC-CCCCeEEEEEECCCCCEeeccEEEE
Confidence 99999988753 3444544321 122222223334788999999997642 4567899999999988655544333
Q ss_pred EeCcEEEEEEcccCcCCceEEEEEEEeCceeeEEE---EEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcc
Q psy2166 357 SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTR---ATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPV 433 (805)
Q Consensus 357 ~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~---~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 433 (805)
...+ .|.|.++..+|+|.|+|.|.|..+..... ..+.+...
T Consensus 154 ~~~~--~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~---------------------------------- 197 (384)
T 3kld_A 154 QETG--NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRND---------------------------------- 197 (384)
T ss_dssp TTTC--CEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEE----------------------------------
T ss_pred cCCC--cEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccC----------------------------------
Confidence 2333 58999999999999999999988654321 12222100
Q ss_pred cCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCe
Q psy2166 434 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQS 513 (805)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~ 513 (805)
......+|.+....+....+.+|++
T Consensus 198 -------------------------------------------------------~~~~~~~p~~~~~~~~~~~~~~G~~ 222 (384)
T 3kld_A 198 -------------------------------------------------------GVMGEYEPKIEVQFPETVPAEKGTT 222 (384)
T ss_dssp -------------------------------------------------------EECCCEEEEEEEECCSEEEEETTSC
T ss_pred -------------------------------------------------------CcccccCCceeecCCCceEecCCCc
Confidence 0001234555555454455889999
Q ss_pred EEEEEEEeeCCCCCcEEEEEEC-CEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeeee
Q psy2166 514 AHFEARLTPVTDPDLVVEWFYN-GKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKT 592 (805)
Q Consensus 514 v~L~C~v~~~g~p~~~v~W~~~-g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 592 (805)
++|.|.+. |.|.|.++|+|+ |..+....+. ..
T Consensus 223 v~l~C~~~--g~P~p~i~W~k~~~~~~~~~~~~--~~------------------------------------------- 255 (384)
T 3kld_A 223 VKLECFAL--GNPVPTILWRRADGKPIARKARR--HK------------------------------------------- 255 (384)
T ss_dssp EEEEEEEE--EESCCEEEEEETTCCCCCTTCEE--CT-------------------------------------------
T ss_pred EEEEEEEe--ecCCCcEEEEeCCCcccccccee--cC-------------------------------------------
Confidence 99999999 678889999995 4333221000 00
Q ss_pred eeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeeccccccccc
Q psy2166 593 NLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQ 672 (805)
Q Consensus 593 ~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~ 672 (805)
. + ..|.|.+++.+|+|.|+|.|.|..|.....+.|.|..
T Consensus 256 ---------------------~---------~--~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~--------- 294 (384)
T 3kld_A 256 ---------------------S---------N--GILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA--------- 294 (384)
T ss_dssp ---------------------T---------S--CEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE---------
T ss_pred ---------------------C---------C--cEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEec---------
Confidence 0 0 1277777888888888888888888777777777764
Q ss_pred cccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEE
Q psy2166 673 LPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVL 752 (805)
Q Consensus 673 ~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L 752 (805)
+|.|...+.+. .+.+|+.+.|.|.+. |.|.|.|+|+|||.++..+.++.+. .+ .|
T Consensus 295 ------------------~P~~~~~~~~~-~v~~g~~v~l~C~~~--g~P~p~i~W~k~g~~l~~~~~~~~~--~~--~L 349 (384)
T 3kld_A 295 ------------------QPNWVQIINDI-HVAMEESVFWECKAN--GRPKPTYRWLKNGDPLLTRDRIQIE--QG--TL 349 (384)
T ss_dssp ------------------EEEEEECCCCE-EECTTCCEEEECEEE--EESCCEEEEEETTEECCCBTTEEEE--TT--EE
T ss_pred ------------------CCccccCCCce-EecCCCCEEEEeECC--ccCCCeEEEEECCEECCCCccEEEe--CC--EE
Confidence 46666666677 899999999999999 9999999999999999888887643 34 79
Q ss_pred EEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 753 EILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 753 ~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
.|.++..+|+|.|+|.|.|.+|....+++|.|..
T Consensus 350 ~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~~ 383 (384)
T 3kld_A 350 NITIVNLSDAGMYQCVAENKHGVIFSSAELSVIA 383 (384)
T ss_dssp EESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred EEeecChhhCEEEEEEEEeCCceEEeceEEEEec
Confidence 9999999999999999999999999999999964
|
| >2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-44 Score=403.02 Aligned_cols=423 Identities=13% Similarity=0.127 Sum_probs=297.3
Q ss_pred EEEEEEEecCCce-eccccCCC---CchhhhhHHhhhhhhcCccccCCCCC------CCCcCCCeEEecCCCCceecCCC
Q psy2166 13 TSGTLKCLGQKDI-YLETQHPM---GAAGLEKVQEVEHALAGKYQRQPSGP------EETFAKPVFIVPLKPEFKLGEAQ 82 (805)
Q Consensus 13 ~~~~l~~~~~~~~-~~~~~~~~---~~~g~~~i~~~~~~d~g~y~c~~~~~------~~~~~~p~~~~~~~~~~~v~~G~ 82 (805)
.+++|.|.+.+.+ |+.++.+. +..+.|.|.+++.+|+|.|+|.+.+. ..+..+|.+. ..+....+.+|+
T Consensus 52 ~~v~l~C~~~~~v~W~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ng~~~~~~l~V~~p~~~~-~~~~~~~v~~G~ 130 (524)
T 2ec8_A 52 DEIRLLCTDPGFVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLF-LVDRSLYGKEDN 130 (524)
T ss_dssp SCEEEEEECTTEEEEEEESSSCCEEECSSEEEESSCCSTTCEEEEEEETTSCEEEEEEECCCSSCSB-CCCCCCCEETTS
T ss_pred CeEEEEEeCCceEEEcCCCccccccCccceEEEcccchhhCEEEEEeecCCcceEEEEEECCCCccc-ccccceEEEcCC
Confidence 3567888888753 66555543 34567899999999999999987651 1222334333 334467899999
Q ss_pred cEEEEEEEecCCCCCceEEEEE-CCEecCCCCceEEEecCcEEEEEEcccccCCCe-EEEEEEEeCCeeEEE-EEEEEEe
Q psy2166 83 PLHLEAQVEPKNDPNLKIEWIF-NGKPLELGSRFKTTADFGFVTLDLTEVYDRDQG-IYTCRAWNLAGETFT-STTIYCS 159 (805)
Q Consensus 83 ~v~L~C~~~~~~~p~~~v~W~k-~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~n~~g~~~~-~~~l~V~ 159 (805)
.++|.|.+. +.+.+.|+|+| ||..+..+.++.+..++ .|.|.+++.+|+| .|+|.|.|..+...+ ...|.|.
T Consensus 131 ~v~l~C~~~--~~~~~~v~W~~~~g~~l~~~~~~~~~~~~---~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~ 205 (524)
T 2ec8_A 131 DTLVRCPLT--DPEVTNYSLKGCQGKPLPKDLRFIPDPKA---GIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVR 205 (524)
T ss_dssp CEEECCCBS--CCCCSCEEEECSSSCCCCSSCEEEEETTT---EEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEE
T ss_pred eEEEECcCC--CCccceEEEEccCCcCcCCCCceeECCCc---cEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEE
Confidence 999999998 45568999998 89999888888776655 7999999999999 999999988665433 5566664
Q ss_pred ccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCCCeE-EE
Q psy2166 160 TKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMT-VE 238 (805)
Q Consensus 160 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~-i~ 238 (805)
..+ ..+|.|...+... .+.+|+.++|.|.+. +.|.+. +.
T Consensus 206 ~~~-------------------------------------~~~p~i~~~~~~~-~v~~G~~v~L~C~~~--g~p~p~~i~ 245 (524)
T 2ec8_A 206 PAF-------------------------------------KAVPVVSVSKASY-LLREGEEFTVTCTIK--DVSSSVYST 245 (524)
T ss_dssp CCC-------------------------------------CSCCEEECSCSEE-EEETTSCEEEEEEEE--ESSTTCEEE
T ss_pred eCC-------------------------------------CCCCcEEecCCcc-eEEcCCcEEEEEEEe--cCCCcEEEE
Confidence 211 1457777766665 588999999999994 666655 99
Q ss_pred EEECCEEc--cCCCcEEEE---EEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEeccCCCCCCeEEecCC--
Q psy2166 239 FLYNGKPI--EASHRIRTV---HAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIK-- 311 (805)
Q Consensus 239 W~k~g~~l--~~~~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~-- 311 (805)
|+++|..+ ......... .......|.|.+++.+|+|.|+|.|.|..|.....+.|.|. .+|.+...+.
T Consensus 246 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~-----~~p~~~~~~~~~ 320 (524)
T 2ec8_A 246 WKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVV-----DKGFINIFPMIN 320 (524)
T ss_dssp EEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEE-----SSCEEEEEESSC
T ss_pred EEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEe-----ccCceEeecCCC
Confidence 99999873 322222221 12235789999999999999999999999998888888887 4566654433
Q ss_pred CcccccCCCeEEEEEEEeecCCCCcE-EEEEECCEEccCCC-ceEEEEeC----cEEEEEEcccCcCCceEEEEEEEeCc
Q psy2166 312 SLEGLKDGDSAHFECTLTPVNDPELK-VEWFHNGKPIFHKN-RVKMVSDF----GFVVMDIAYVQSHDSGEYVCRAWNKY 385 (805)
Q Consensus 312 ~~~~~~~g~~~~l~C~~~~~~~p~~~-v~W~~~g~~l~~~~-~~~~~~~~----~~~~l~i~~v~~~d~G~Y~C~a~n~~ 385 (805)
....+.+|+.++|.|.+. +.|.+. +.|+++|..+.... ++....++ ....|.|.++..+|+|.|+|.|.|..
T Consensus 321 ~~~~v~~G~~v~l~C~~~--g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 398 (524)
T 2ec8_A 321 TTVFVNDGENVDLIVEYE--AFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSD 398 (524)
T ss_dssp SEEEECTTCCEEEEEEEE--EESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred ceEEEcCCCcEEEEEEEe--ecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecC
Confidence 233488999999999997 778888 99999999987654 33332222 34679999999999999999999999
Q ss_pred eeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccC
Q psy2166 386 GEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT 465 (805)
Q Consensus 386 g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (805)
|.....+.|.|..
T Consensus 399 g~~~~~~~l~V~~------------------------------------------------------------------- 411 (524)
T 2ec8_A 399 VNAAIAFNVYVNT------------------------------------------------------------------- 411 (524)
T ss_dssp CEEEEEEEEEECE-------------------------------------------------------------------
T ss_pred ceEEEEEEEEEec-------------------------------------------------------------------
Confidence 9988888888753
Q ss_pred CCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccC----
Q psy2166 466 DPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPH---- 541 (805)
Q Consensus 466 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~---- 541 (805)
+|.+..... ..+| +|.|.+. |.|.|.|+|+++|..+..
T Consensus 412 -----------------------------~P~i~~~~~----~~~g---~l~C~~~--g~P~p~i~W~~~~~~~~~~~~~ 453 (524)
T 2ec8_A 412 -----------------------------KPEILTYDR----LVNG---MLQCVAA--GFPEPTIDWYFCPGTEQRCSAS 453 (524)
T ss_dssp -----------------------------EEEEEEEEC----CSSS---CEEEEEE--EESCCEEECCCC----------
T ss_pred -----------------------------CCeEeeccc----CcCc---EEEEEEE--eecCCEEEEEECCCcccccccc
Confidence 344444332 3456 9999999 678889999999876621
Q ss_pred ----CCc---eEEEeeCCEEE-EEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeeeee
Q psy2166 542 ----GHR---YRTFHDFGIVI-LDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTN 593 (805)
Q Consensus 542 ----~~~---~~~~~~~~~~~-L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~ 593 (805)
+.+ +....++.... ..|.....+|+|.|+|.|.|..|.....+.|.|..++.
T Consensus 454 ~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V~e~~~ 513 (524)
T 2ec8_A 454 VLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNK 513 (524)
T ss_dssp CCCCCCCCCCC-CCSSSCEEEEEEECCCSCCC-----CEEECSSCEEECCCCCCC-----
T ss_pred cCCCCceeeeeccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCceEEEEEEEEecCCH
Confidence 111 11122233222 22444446999999999999999999999998887654
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-42 Score=373.24 Aligned_cols=373 Identities=20% Similarity=0.292 Sum_probs=276.9
Q ss_pred CCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCC--CceEEEecCcEEEEEEccc-----ccCCC
Q psy2166 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG--SRFKTTADFGFVTLDLTEV-----YDRDQ 136 (805)
Q Consensus 64 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~--~~~~~~~~~~~~~L~I~~~-----~~~D~ 136 (805)
....|...+ .++.+.+|+.++|.|.+.+ +.|.+.|.|+|||..+... .++....++ +|.|.++ +.+|+
T Consensus 20 ~~~~~~~~P-~~~~v~~G~~v~L~C~~~~-~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~---~l~i~~~~~~~~~~~D~ 94 (403)
T 3laf_A 20 RSLHFVSEP-SDAVTMRGGNVLLNCSAES-DRGVPVIKWKKDGLILALGMDDRKQQLPNG---SLLIQNILHSRHHKPDE 94 (403)
T ss_dssp CSSEEEECC-CCEEECTTCCEEECCEEEC-TTCCCEEEEEETTEECCTTSCTTEEECTTS---CEEECSCCCBTTBCSSC
T ss_pred eeEEEEeCC-CceEEecCCcEEEEEEcCC-CCCCceEEEEECCEECccCCcccEEEecCC---cEEEeeeeccCCCCCcc
Confidence 344555444 4789999999999999984 3678899999999998753 455555554 5777776 78899
Q ss_pred eEEEEEEEeCCeeEE--EEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccc
Q psy2166 137 GIYTCRAWNLAGETF--TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSN 214 (805)
Q Consensus 137 G~Y~C~a~n~~g~~~--~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 214 (805)
|.|+|.|.+..+... ....+.|.. ||.+...+... .
T Consensus 95 G~Y~C~~~~~~~~~~~s~~~~l~v~~-----------------------------------------p~~~~~~~~~~-~ 132 (403)
T 3laf_A 95 GLYQCEASLGDSGSIISRTAKVMVAG-----------------------------------------PLRFLSQTESI-T 132 (403)
T ss_dssp EEEEEEEECGGGCEEECCCEEEEECC-----------------------------------------CCEECSCCCCE-E
T ss_pred eEEEEEEEeCCCccEEEEEEEEEecC-----------------------------------------CCccccCCCcE-E
Confidence 999999997543332 234444432 34444333333 4
Q ss_pred cCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeE-EEEEEE
Q psy2166 215 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA-EISVNL 293 (805)
Q Consensus 215 v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~-~~~~~l 293 (805)
+.+|+.+.|.|.+ .+.|.+.+.|+|+|..+................|.|.+++.+|+|.|+|.+.|..+.. ...+.+
T Consensus 133 ~~~G~~v~l~C~~--~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l 210 (403)
T 3laf_A 133 AFMGDTVLLKCEV--IGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEV 210 (403)
T ss_dssp EETTSCEEECCCE--ECSSCCEEEEEESSSBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEE
T ss_pred EEcCCeEEEEEEE--cccCCCeEEEEECCEeccccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeE
Confidence 7899999999988 5788899999999988853221111112222379999999999999999999987653 345666
Q ss_pred EEeccCCCCCC-eEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCcEEEEEEcccCcC
Q psy2166 294 ECVDKSKGQPP-KFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSH 372 (805)
Q Consensus 294 ~v~~~~~~~~p-~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~ 372 (805)
.|...+....+ .+...+... .+.+|+.++|.|.+. +.|.+.+.|++++..+...........+. .|.|.++..+
T Consensus 211 ~v~~~p~~~~~~~~~~~~~~~-~~~~g~~~~l~C~~~--~~p~~~~~W~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~ 285 (403)
T 3laf_A 211 RILSDPGLHRQLYFLQRPSNV-IAIEGKDAVLECCVS--GYPPPSFTWLRGEEVIQLRSKKYSLLGGS--NLLISNVTDD 285 (403)
T ss_dssp EEECCCCCCEEEEEEECCCCE-EEETTSCEEECCEEE--EESCCEEEEEETTEECCCSSSSEEEETTT--EEEECSCCGG
T ss_pred EEecCCCcccCceEecCCCce-EecCCCcEEEEEEcC--CCCCCeEEEEECCeeccCCCceEEECCcc--EEEEeCCCHH
Confidence 66543321111 233333333 377999999999998 77888999999999987554433333333 6899999999
Q ss_pred CceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCC
Q psy2166 373 DSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEG 452 (805)
Q Consensus 373 d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (805)
|+|.|+|.|.|..|.....+.|.|..
T Consensus 286 d~G~Y~C~a~n~~g~~~~~~~l~V~~------------------------------------------------------ 311 (403)
T 3laf_A 286 DSGTYTCVVTYKNENISASAELTVLV------------------------------------------------------ 311 (403)
T ss_dssp GCEEEEEEEEETTEEEEEEEEEEEEE------------------------------------------------------
T ss_pred HCEEEEEEEEcCCCceEEEEEEEEEC------------------------------------------------------
Confidence 99999999999999988888888753
Q ss_pred ceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEE
Q psy2166 453 QSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEW 532 (805)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W 532 (805)
+|.+...+.... +.+|+.++|.|.+. |.|.+.|+|
T Consensus 312 ------------------------------------------~p~~~~~~~~~~-~~~g~~v~l~C~~~--g~p~p~v~W 346 (403)
T 3laf_A 312 ------------------------------------------PPWFLNHPSNLY-AYESMDIEFECAVS--GKPVPTVNW 346 (403)
T ss_dssp ------------------------------------------EEEEEECCCCEE-CCTTCCEEECCEEE--EESCCEEEE
T ss_pred ------------------------------------------CCcEeecCcceE-EecCCeEEEEEEEe--eccCCEEEE
Confidence 344544444443 88999999999999 678889999
Q ss_pred EECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeeee
Q psy2166 533 FYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKT 592 (805)
Q Consensus 533 ~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 592 (805)
+|+|..+..+.++.+..+. .|.|.++..+|+|.|+|.|.|..|.....+.|.|..++
T Consensus 347 ~~~g~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P~ 403 (403)
T 3laf_A 347 MKNGDVVIPSDYFQIVGGS---NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKPA 403 (403)
T ss_dssp EETTEECCCSSSEEEETTT---EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC-
T ss_pred EECCEECCCCCcEEEecCc---cEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCCC
Confidence 9999999877776654332 59999999999999999999999999999999987653
|
| >2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-41 Score=384.68 Aligned_cols=399 Identities=14% Similarity=0.160 Sum_probs=289.3
Q ss_pred hhhHHhhhhhhcCccccCCCCCC---------CCcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEe
Q psy2166 38 LEKVQEVEHALAGKYQRQPSGPE---------ETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKP 108 (805)
Q Consensus 38 ~~~i~~~~~~d~g~y~c~~~~~~---------~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~ 108 (805)
.|.|.+++.+|+|.|+|.+.+.. .+..+|.|... +..+.+.+|+.++|.|.+.+ +.+.+.|.|+|++..
T Consensus 76 ~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~~~~~-~~~~~v~~G~~v~l~C~~~~-~~~~~~v~W~k~~~~ 153 (585)
T 2ocw_A 76 VVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLND-TKVYTVDLGRTVTINCPFKT-ENAQKRKSLYKQIGL 153 (585)
T ss_pred EEEECCCCcccCEEEEEEcccCCCCceEEEEEEEecCccccCC-CccEEEEcCCCEEEEEEecC-CCCCccEEEEECCCC
Confidence 47899999999999999865432 23456666544 34678999999999999984 245678999999864
Q ss_pred cC-------------CCCceEEEecC---cEEEEEEcccccCCCeEEEEEEEeCCeeEEEEEEEEEeccccccccccCCC
Q psy2166 109 LE-------------LGSRFKTTADF---GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPK 172 (805)
Q Consensus 109 i~-------------~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~ 172 (805)
+. ...|+.+..++ +.++|.|.+++.+|+|.|+|.|.|..|.....+.|.|..++
T Consensus 154 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~---------- 223 (585)
T 2ocw_A 154 YPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPE---------- 223 (585)
T ss_pred CceEEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCC----------
Confidence 32 13466665543 35589999999999999999999998888888888875421
Q ss_pred CcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCCC-eEEEEE-ECCEE----c
Q psy2166 173 GEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQT-MTVEFL-YNGKP----I 246 (805)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~-~~i~W~-k~g~~----l 246 (805)
|.+ ..+.+|+.+.|.|.+. ...|. +.+.|+ ++|.. +
T Consensus 224 ------------------------------p~~-------~~~~~G~~v~l~C~~~-~~~~~~~~~~w~~~~g~~~~~~~ 265 (585)
T 2ocw_A 224 ------------------------------PEL-------VYEDLRGSVTFHCALG-PEVANVAKFLCRQSSGENCDVVV 265 (585)
T ss_pred ------------------------------Cce-------eEEcCCCcEEEEEEcC-CCCCCceEEEEEeCCCCCcceEE
Confidence 211 1367999999999962 22233 789997 88832 1
Q ss_pred c--------CCCcEEEEEE--cCeEEEEEcCCCCcccEEEEEEEEcCCeeE----EEEEEEEEeccCCCCCCeEEecCCC
Q psy2166 247 E--------ASHRIRTVHA--FGMVVLEILGTKIEDTGVYTCRATNKWGQA----EISVNLECVDKSKGQPPKFTSHIKS 312 (805)
Q Consensus 247 ~--------~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~----~~~~~l~v~~~~~~~~p~~~~~~~~ 312 (805)
. ...++.+... ++...|.|.+++.+|+|.|+|.|.|..+.. ...+.|.|. .+|.+...+..
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~-----~~p~~~~~~~~ 340 (585)
T 2ocw_A 266 NTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVN-----EESTIPRSPTV 340 (585)
T ss_pred eCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCccccCceeeEEEEEe-----cccccccCCcc
Confidence 1 1233333222 344589999999999999999999953333 167777776 34555544444
Q ss_pred cccccCCCeEEEEEEEeecCCCCcEE----EEEE--CCE--EccC---------CCceEEEE--eCcEEEEEEcccCcCC
Q psy2166 313 LEGLKDGDSAHFECTLTPVNDPELKV----EWFH--NGK--PIFH---------KNRVKMVS--DFGFVVMDIAYVQSHD 373 (805)
Q Consensus 313 ~~~~~~g~~~~l~C~~~~~~~p~~~v----~W~~--~g~--~l~~---------~~~~~~~~--~~~~~~l~i~~v~~~d 373 (805)
.. +.+|+.+.|.|.+. +.|.+.+ .|++ +|. .+.. ..++.+.. .++.++|.|.++..+|
T Consensus 341 ~~-~~~G~~v~l~C~~~--~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D 417 (585)
T 2ocw_A 341 VK-GVAGSSVAVLCPYN--RKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRD 417 (585)
T ss_pred eE-EEeCCcEEEEEecC--CCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhh
Confidence 33 78999999999997 7888776 7999 887 4432 33454443 2455669999999999
Q ss_pred ceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCc
Q psy2166 374 SGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQ 453 (805)
Q Consensus 374 ~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (805)
+|.|+|.| |..|.....+.|.|...
T Consensus 418 ~G~Y~C~a-n~~g~~~~~~~l~V~~~------------------------------------------------------ 442 (585)
T 2ocw_A 418 AGFYWCLT-NGDTLWRTTVEIKIIEG------------------------------------------------------ 442 (585)
T ss_pred CEEEEEcc-cCCCccceeEEEEEecC------------------------------------------------------
Confidence 99999999 88888888888887532
Q ss_pred eEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeC--CCCCcEEE
Q psy2166 454 SAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPV--TDPDLVVE 531 (805)
Q Consensus 454 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~--g~p~~~v~ 531 (805)
+|.+.. +.. ..+.+|+.++|.|.+.+. +.|.+.|+
T Consensus 443 -----------------------------------------~p~~~~-~~~-~~v~~G~~v~L~C~~~~~~~~~p~~~v~ 479 (585)
T 2ocw_A 443 -----------------------------------------EPNLKV-PGN-VTAVLGETLKVPCHFPCKFSSYEKYWCK 479 (585)
T ss_pred -----------------------------------------cccccc-CCc-eeEecCCcEEEEEEecCCCCCCccEEEE
Confidence 222222 222 348899999999999632 56888999
Q ss_pred EEECCEEccCCCc------eEE-EeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEE-EEEEEeeee
Q psy2166 532 WFYNGKKLPHGHR------YRT-FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK-ASLKCVSKT 592 (805)
Q Consensus 532 W~~~g~~l~~~~~------~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~ 592 (805)
|+|||..+..... +.. ..++....|.|.+++.+|+|.|+|.|.|..|..... +.|.|..++
T Consensus 480 W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p 548 (585)
T 2ocw_A 480 WNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK 548 (585)
T ss_pred EeecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence 9999988753321 222 223445789999999999999999999999976644 889998876
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=368.15 Aligned_cols=359 Identities=14% Similarity=0.172 Sum_probs=235.4
Q ss_pred eecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCC
Q psy2166 205 FTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKW 284 (805)
Q Consensus 205 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 284 (805)
+...+.. .++.+|+.+.|.|.+ .+.|.+.|.|++++..+.....+. ........|.|.+++.+|+|.|+|.|.|..
T Consensus 51 ~~~~~~~-v~V~~G~~v~L~C~v--~g~P~p~i~W~~~~~~l~~~~~~~-~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~ 126 (423)
T 3qs7_E 51 TVYEAAA-VEVDVSASITLQVLV--DAPGNISCLWVFKHSSLNCQPHFD-LQNRGVVSMVILKMTETQAGEYLLFIQSEA 126 (423)
T ss_dssp -----CE-EEECSSCCEEEEEEC--SCCSSCEEEEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--
T ss_pred ceecccc-EEEecCCcEEEEEEE--EcCCCCeEEEEECCCccCccceec-cccceEEEEEEeecCcccCEEEEEEEEcCC
Confidence 3333333 368999999999998 789999999999998876533221 111223579999999999999999999999
Q ss_pred eeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCc---eEEEEeCcE
Q psy2166 285 GQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNR---VKMVSDFGF 361 (805)
Q Consensus 285 g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~---~~~~~~~~~ 361 (805)
|.....+.|.|.. +|.+.. .....+..|+.+.|.|.+. |.|.|.|+|++++..+..... ..+.....
T Consensus 127 g~~~~~~~l~V~~-----~p~~~~--~~p~~~~~~~~~~L~C~a~--G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~- 196 (423)
T 3qs7_E 127 TNYTILFTVSIRN-----TLLYTL--RRPYFRKMENQDALVCISE--SVPEPIVEWVLCDSQGESCKEESPAVVKKEEK- 196 (423)
T ss_dssp CEEEEEEEEEEC----------CE--EEEEEEECSSSSCEEEEEE--ESSCCEEEEEEC-------------CEEECCS-
T ss_pred CcEEEEEEEEEec-----Cccccc--cCCcEeccCCceEEEEEEe--eecCCeEEEEECCCCCccccccccccccccce-
Confidence 9888888888762 333211 1111245688889999998 899999999999876532110 00111111
Q ss_pred EEEEEcccCcCCceEEEEEEEeCceeeEEE-EEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCcee
Q psy2166 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTR-ATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFI 440 (805)
Q Consensus 362 ~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (805)
. +...|+|.|+|.|.|..|..... +.|.|.
T Consensus 197 -~-----l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~------------------------------------------- 227 (423)
T 3qs7_E 197 -V-----LHELFGTDIRCCARNELGRECTRLFTIDLN------------------------------------------- 227 (423)
T ss_dssp -E-----ECCCCSSCEEEEEECSSCEEEEECEEEESS-------------------------------------------
T ss_pred -E-----EecccCeEEEEEEEcCCCCcceeeEEEEEe-------------------------------------------
Confidence 1 15789999999999999876542 444432
Q ss_pred eeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEE
Q psy2166 441 TQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARL 520 (805)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v 520 (805)
.+|.+ .+. ...+.+|+.++|.|.+
T Consensus 228 -----------------------------------------------------~~p~~--~~~-~~~v~~G~~v~L~C~~ 251 (423)
T 3qs7_E 228 -----------------------------------------------------QTPQT--TLP-QLFLKVGEPLWIRCKA 251 (423)
T ss_dssp -----------------------------------------------------SCCCS--STT-EEEEETTSCEEEEEEE
T ss_pred -----------------------------------------------------cCCcc--CCC-ceEEeCCCeEEEEEEE
Confidence 22222 111 2348899999999999
Q ss_pred eeCCCCCcEEEEEECCEEccCCCceEE--Ee----eCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeeeeee
Q psy2166 521 TPVTDPDLVVEWFYNGKKLPHGHRYRT--FH----DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNL 594 (805)
Q Consensus 521 ~~~g~p~~~v~W~~~g~~l~~~~~~~~--~~----~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~ 594 (805)
.+ ..|.|.|+|+|+|..+.....+.. .. ......|.|.+++.+|+|.|+|.|.|. ....+.|.|..++.+
T Consensus 252 ~g-~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p~i 327 (423)
T 3qs7_E 252 VH-VNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFI 327 (423)
T ss_dssp EE-SSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSCEE
T ss_pred Ec-CCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCCcc
Confidence 94 377789999999998865432211 11 112346999999999999999999887 556666666544331
Q ss_pred eecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeeccccccccccc
Q psy2166 595 ILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLP 674 (805)
Q Consensus 595 ~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p 674 (805)
. +..
T Consensus 328 ~-----------------------------------~~~----------------------------------------- 331 (423)
T 3qs7_E 328 N-----------------------------------ATN----------------------------------------- 331 (423)
T ss_dssp E-----------------------------------EC------------------------------------------
T ss_pred e-----------------------------------EcC-----------------------------------------
Confidence 0 000
Q ss_pred cccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEE
Q psy2166 675 ELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEI 754 (805)
Q Consensus 675 ~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i 754 (805)
...+. .+.+|+.+.|.|.+. |+|.|.|+|+|||+.|..+.+.. . .+ ..+.+
T Consensus 332 ----------------------~~~~~-~v~~G~~v~l~C~~~--g~P~p~i~W~k~g~~l~~~~~~~--~-~~-~~~~~ 382 (423)
T 3qs7_E 332 ----------------------SSEDY-EIDQYEEFCFSVRFK--AYPQIRCTWTFSRKSFPCEQKGL--D-NG-YSISK 382 (423)
T ss_dssp ------------------------CEE-CCCTTCCCCEEEEEE--EESCCEEEEEETTEEEECBCCBC--S-SS-SEEEE
T ss_pred ----------------------CCccE-EecCCCeEEEEEEEE--EcCCCeEEEEECCEECCCccccc--c-CC-cEEEE
Confidence 00112 678899999999999 99999999999999997653210 0 01 12223
Q ss_pred cCCCCCCCEEEEEEEEcCCccEEEEEEEEEEEeCCCc
Q psy2166 755 LGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQ 791 (805)
Q Consensus 755 ~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~ 791 (805)
..+..+|+|.|+|.|.|.+|..+.++.|.|...|.++
T Consensus 383 ~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~~~ 419 (423)
T 3qs7_E 383 FCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHH 419 (423)
T ss_dssp ECCCTTCCSCEEEEEEETTEEEEEEEEEC--------
T ss_pred EecccccCEEEEEEEEcCCceEEEEEEEEEecCCccc
Confidence 5567789999999999999999999999998876553
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-42 Score=366.93 Aligned_cols=365 Identities=22% Similarity=0.320 Sum_probs=270.9
Q ss_pred CCCeEEecCCCCcee---cCCCcEEEEEEEecCCCCCceEEEEECCEecCCC--CceEEEecCcEEEEEEccccc-CCCe
Q psy2166 64 AKPVFIVPLKPEFKL---GEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG--SRFKTTADFGFVTLDLTEVYD-RDQG 137 (805)
Q Consensus 64 ~~p~~~~~~~~~~~v---~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~--~~~~~~~~~~~~~L~I~~~~~-~D~G 137 (805)
.+|.|...+. +..+ .+|+.++|.|.+. |.|.+.|.|+|||..+..+ .++.+. ++ +|.|.++.. +|+|
T Consensus 3 ~~P~~~~~p~-~~~~~~~~~g~~v~l~C~~~--g~p~~~v~W~k~g~~~~~~~~~~~~~~--~~--~L~i~~~~~~~D~G 75 (382)
T 1cs6_A 3 YGPVFEEQPA-HTLFPEGSAEEKVTLTCRAR--ANPPATYRWKMNGTELKMGPDSRYRLV--AG--DLVISNPVKAKDAG 75 (382)
T ss_dssp EEEEEEECCC-CEEEETTCSCCEEEECCEEE--EESCCEEEEEETTEECCCSTTSSEEEE--TT--EEEEESCCHHHHCE
T ss_pred CCCEEEECCC-cEEEecCCCCCcEEEEEEec--CCCCCEEEEEECCEECCcCCCccEEee--CC--eEEEecccccccCE
Confidence 3678877776 3444 7899999999998 5788899999999998754 455543 33 799999987 9999
Q ss_pred EEEEEEEeCCeeEEE-EEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccC
Q psy2166 138 IYTCRAWNLAGETFT-STTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLS 216 (805)
Q Consensus 138 ~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~ 216 (805)
.|+|.|.|..|.... ...|.|...+.+ .........+.
T Consensus 76 ~Y~C~a~n~~g~~~s~~~~l~v~~~~~~-----------------------------------------~~~~~~~~~v~ 114 (382)
T 1cs6_A 76 SYQCVATNARGTVVSREASLRFGFLQEF-----------------------------------------SAEERDPVKIT 114 (382)
T ss_dssp EEEEEEEETTEEEECCCEEEEEEEECCC-----------------------------------------CSSCCCCEEEE
T ss_pred EEEEEEEcCCcEEEecceEEEeeccccc-----------------------------------------cccCCCceEEe
Confidence 999999999887643 456666543211 11111122477
Q ss_pred CCceEEEEEEEeeCCCCCeEEEEEECCEEccC--CCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEE-----
Q psy2166 217 EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEA--SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI----- 289 (805)
Q Consensus 217 ~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~----- 289 (805)
+|+.+.|.|.+. .+.|.+.+.|++++..+.. ..+.. .......|.|.+++.+|+|.|+|.+.|..+....
T Consensus 115 ~G~~v~l~C~~~-~~~p~~~i~W~~~~~~~~~~~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~ 191 (382)
T 1cs6_A 115 EGWGVMFTCSPP-PHYPALSYRWLLNEFPNFIPADGRRF--VSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSK 191 (382)
T ss_dssp TTSCEEECCCCC-SEESCCEEEEEESSTTCBCCCCSSEE--ECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECC
T ss_pred cCCcEEEEeCCC-CCCCCcEEEEEECCCccccccCceEE--EecCceEEEEEeeCcccCeeEEEEEEEccccccceeEcc
Confidence 999999999753 3567789999999876532 23322 2222347999999999999999999987643322
Q ss_pred EEEEEEecc-CCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCcEEEEEEcc
Q psy2166 290 SVNLECVDK-SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAY 368 (805)
Q Consensus 290 ~~~l~v~~~-~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~ 368 (805)
.+.+.+... ....+|.+.........+.+|+.++|.|.+. +.|.+.+.|++++..+.... . .....|.|.+
T Consensus 192 ~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~--g~p~~~i~W~~~~~~~~~~~----~--~~~~~L~i~~ 263 (382)
T 1cs6_A 192 FSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAF--GNPVPQIKWRKLDGSQTSKW----L--SSEPLLHIQN 263 (382)
T ss_dssp CEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEE--EESCCEEEEEECCSCCSCCC----S--BSSSEEEECS
T ss_pred ceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEc--cCCCCEEEEEECCcccccEE----e--cCCcEEEEcc
Confidence 233443321 1112455554433344488999999999998 77889999999887764311 1 1223689999
Q ss_pred cCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceee
Q psy2166 369 VQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQ 448 (805)
Q Consensus 369 v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (805)
+..+|+|.|+|.|.|..|.....+.|.|..
T Consensus 264 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-------------------------------------------------- 293 (382)
T 1cs6_A 264 VDFEDEGTYECEAENIKGRDTYQGRIIIHA-------------------------------------------------- 293 (382)
T ss_dssp CCGGGCEEEEEEEEETTEEEEEEEEEEEEE--------------------------------------------------
T ss_pred CChhhCEEEEEEEEcCCCeEEEEEEEEEec--------------------------------------------------
Confidence 999999999999999999988888888753
Q ss_pred ecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCc
Q psy2166 449 LKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDL 528 (805)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~ 528 (805)
+|.+...+... .+.+|+.++|.|.+. |.|.+
T Consensus 294 ----------------------------------------------~p~~~~~~~~~-~~~~g~~~~l~C~~~--g~p~p 324 (382)
T 1cs6_A 294 ----------------------------------------------QPDWLDVITDT-EADIGSDLRWSCVAS--GKPRP 324 (382)
T ss_dssp ----------------------------------------------EEEEEECCCCE-EEETTCCEEEECEEE--EESCC
T ss_pred ----------------------------------------------CCCcccCCCcc-EEcCCCeEEEEEEee--eecCC
Confidence 34444444443 388999999999999 67888
Q ss_pred EEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEee
Q psy2166 529 VVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVS 590 (805)
Q Consensus 529 ~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 590 (805)
.++|+|+|..+..+.++.+. ++ .|.|.++..+|+|.|+|.|.|..|.....+.|.|.+
T Consensus 325 ~v~W~~~g~~~~~~~~~~~~--~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~a 382 (382)
T 1cs6_A 325 AVRWLRDGQPLASQNRIEVS--GG--ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382 (382)
T ss_dssp EEEEEETTEECCCCSSEEEE--TT--EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEEECCEECCCCceEEEE--CC--EEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEeC
Confidence 99999999999887777653 23 599999999999999999999999999999998863
|
| >1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=365.94 Aligned_cols=368 Identities=22% Similarity=0.281 Sum_probs=272.8
Q ss_pred CCCceecccccccc--cCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCC-cccEEEE
Q psy2166 201 RPPQFTSEFQHLSN--LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKI-EDTGVYT 277 (805)
Q Consensus 201 ~~p~~~~~~~~~~~--v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~ 277 (805)
.+|.|...+.+... ..+|+.++|.|.+ .+.|.+.+.|+|+|..+......+....++ .|.|.++.. +|+|.|+
T Consensus 3 ~~P~~~~~p~~~~~~~~~~g~~v~l~C~~--~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~--~L~i~~~~~~~D~G~Y~ 78 (382)
T 1cs6_A 3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRA--RANPPATYRWKMNGTELKMGPDSRYRLVAG--DLVISNPVKAKDAGSYQ 78 (382)
T ss_dssp EEEEEEECCCCEEEETTCSCCEEEECCEE--EEESCCEEEEEETTEECCCSTTSSEEEETT--EEEEESCCHHHHCEEEE
T ss_pred CCCEEEECCCcEEEecCCCCCcEEEEEEe--cCCCCCEEEEEECCEECCcCCCccEEeeCC--eEEEecccccccCEEEE
Confidence 46888888877642 3789999999998 567889999999999987653222223333 699999997 9999999
Q ss_pred EEEEcCCeeEE-EEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEcc--CCCceE
Q psy2166 278 CRATNKWGQAE-ISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIF--HKNRVK 354 (805)
Q Consensus 278 C~~~n~~g~~~-~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~--~~~~~~ 354 (805)
|.+.|..|... ..+.+.|... +.+.........+.+|+.++|.|.+.+ +.|.+.+.|++++..+. ...+..
T Consensus 79 C~a~n~~g~~~s~~~~l~v~~~-----~~~~~~~~~~~~v~~G~~v~l~C~~~~-~~p~~~i~W~~~~~~~~~~~~~~~~ 152 (382)
T 1cs6_A 79 CVATNARGTVVSREASLRFGFL-----QEFSAEERDPVKITEGWGVMFTCSPPP-HYPALSYRWLLNEFPNFIPADGRRF 152 (382)
T ss_dssp EEEEETTEEEECCCEEEEEEEE-----CCCCSSCCCCEEEETTSCEEECCCCCS-EESCCEEEEEESSTTCBCCCCSSEE
T ss_pred EEEEcCCcEEEecceEEEeecc-----ccccccCCCceEEecCCcEEEEeCCCC-CCCCcEEEEEECCCccccccCceEE
Confidence 99999888653 2455555432 222222223334889999999998642 56788999999987653 223332
Q ss_pred EEEeCcEEEEEEcccCcCCceEEEEEEEeCceeeEEE-----EEEEEEecccccccCCChhHHHHHHHhhhccCCCCccc
Q psy2166 355 MVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTR-----ATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQ 429 (805)
Q Consensus 355 ~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~-----~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 429 (805)
+.... ..|.|.++..+|+|.|+|.+.|..|..... +.+.|...
T Consensus 153 ~~~~~--~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~------------------------------ 200 (382)
T 1cs6_A 153 VSQTT--GNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAE------------------------------ 200 (382)
T ss_dssp ECTTT--CCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESC------------------------------
T ss_pred EecCc--eEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchh------------------------------
Confidence 22222 269999999999999999999887433222 23333210
Q ss_pred cCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCccccc
Q psy2166 430 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLK 509 (805)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~ 509 (805)
.....+|.+....+....+.
T Consensus 201 ------------------------------------------------------------~~~~~~P~~~~~~~~~~~~~ 220 (382)
T 1cs6_A 201 ------------------------------------------------------------DARQYAPSIKAKFPADTYAL 220 (382)
T ss_dssp ------------------------------------------------------------CCCCEEEEEEECCCSEEEEE
T ss_pred ------------------------------------------------------------hcccCCCceeccCCCceEEe
Confidence 01134566666555455589
Q ss_pred CCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEe
Q psy2166 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 510 ~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
+|+.++|.|.+. +.|.+.+.|+|++..+... .
T Consensus 221 ~G~~v~l~C~~~--g~p~~~i~W~~~~~~~~~~--------------------~-------------------------- 252 (382)
T 1cs6_A 221 TGQMVTLECFAF--GNPVPQIKWRKLDGSQTSK--------------------W-------------------------- 252 (382)
T ss_dssp TTCCEEEECEEE--EESCCEEEEEECCSCCSCC--------------------C--------------------------
T ss_pred CCCeEEEEEEEc--cCCCCEEEEEECCcccccE--------------------E--------------------------
Confidence 999999999999 6688899999977543210 0
Q ss_pred eeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeecccccc
Q psy2166 590 SKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLIL 669 (805)
Q Consensus 590 ~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~ 669 (805)
.. ....|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus 253 -----------------------~~----------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~------ 293 (382)
T 1cs6_A 253 -----------------------LS----------SEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA------ 293 (382)
T ss_dssp -----------------------SB----------SSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE------
T ss_pred -----------------------ec----------CCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEec------
Confidence 00 001278888888999999999999998888888888874
Q ss_pred ccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcE
Q psy2166 670 ESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGM 749 (805)
Q Consensus 670 ~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~ 749 (805)
+|.|...+.+. .+.+|+.+.|.|.+. |.|.|.|+|+|+|..+..+.++.+. .+
T Consensus 294 ---------------------~p~~~~~~~~~-~~~~g~~~~l~C~~~--g~p~p~v~W~~~g~~~~~~~~~~~~--~~- 346 (382)
T 1cs6_A 294 ---------------------QPDWLDVITDT-EADIGSDLRWSCVAS--GKPRPAVRWLRDGQPLASQNRIEVS--GG- 346 (382)
T ss_dssp ---------------------EEEEEECCCCE-EEETTCCEEEECEEE--EESCCEEEEEETTEECCCCSSEEEE--TT-
T ss_pred ---------------------CCCcccCCCcc-EEcCCCeEEEEEEee--eecCCEEEEEECCEECCCCceEEEE--CC-
Confidence 56666666677 899999999999998 9999999999999999988887653 33
Q ss_pred EEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 750 VVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 750 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
.|.|.++..+|+|.|+|.|.|.+|....++.|.|+
T Consensus 347 -~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 381 (382)
T 1cs6_A 347 -ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381 (382)
T ss_dssp -EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred -EEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence 69999999999999999999999999999999986
|
| >3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-41 Score=364.71 Aligned_cols=369 Identities=24% Similarity=0.336 Sum_probs=270.3
Q ss_pred CCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCC--CcEEEEEEcCeEEEEEcCC-----CCccc
Q psy2166 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTVHAFGMVVLEILGT-----KIEDT 273 (805)
Q Consensus 201 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~--~~~~~~~~~~~~~L~i~~~-----~~~d~ 273 (805)
....+...|.+. .+.+|+.++|.|.+. .+.|.+.+.|+|+|..+... .+.... .++ .|.|.++ +.+|+
T Consensus 20 ~~~~~~~~P~~~-~v~~G~~v~L~C~~~-~~~p~~~v~W~k~g~~~~~~~~~~~~~~-~~~--~l~i~~~~~~~~~~~D~ 94 (403)
T 3laf_A 20 RSLHFVSEPSDA-VTMRGGNVLLNCSAE-SDRGVPVIKWKKDGLILALGMDDRKQQL-PNG--SLLIQNILHSRHHKPDE 94 (403)
T ss_dssp CSSEEEECCCCE-EECTTCCEEECCEEE-CTTCCCEEEEEETTEECCTTSCTTEEEC-TTS--CEEECSCCCBTTBCSSC
T ss_pred eeEEEEeCCCce-EEecCCcEEEEEEcC-CCCCCceEEEEECCEECccCCcccEEEe-cCC--cEEEeeeeccCCCCCcc
Confidence 445666676666 488999999999984 24678899999999998754 233222 222 4777776 67799
Q ss_pred EEEEEEEEcCCeeE--EEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccC--
Q psy2166 274 GVYTCRATNKWGQA--EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFH-- 349 (805)
Q Consensus 274 G~Y~C~~~n~~g~~--~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~-- 349 (805)
|.|+|.+.+..+.. +..+.+.|. .+|.+...+.... +.+|+.+.|.|.+. +.|.+.+.|++++..+..
T Consensus 95 G~Y~C~~~~~~~~~~~s~~~~l~v~-----~p~~~~~~~~~~~-~~~G~~v~l~C~~~--~~p~~~v~W~~~~~~~~~~~ 166 (403)
T 3laf_A 95 GLYQCEASLGDSGSIISRTAKVMVA-----GPLRFLSQTESIT-AFMGDTVLLKCEVI--GDPMPTIHWQKNQQDLNPIP 166 (403)
T ss_dssp EEEEEEEECGGGCEEECCCEEEEEC-----CCCEECSCCCCEE-EETTSCEEECCCEE--CSSCCEEEEEESSSBCCCCT
T ss_pred eEEEEEEEeCCCccEEEEEEEEEec-----CCCccccCCCcEE-EEcCCeEEEEEEEc--ccCCCeEEEEECCEeccccC
Confidence 99999999654333 334555554 4566655544443 88999999999997 888899999999988753
Q ss_pred -CCceEEEEeCcEEEEEEcccCcCCceEEEEEEEeCceeeE-EEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCc
Q psy2166 350 -KNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDF-TRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPV 427 (805)
Q Consensus 350 -~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 427 (805)
..+.... ..+ .|.|.++..+|+|.|+|.|.|..|... ..+.+.|...+..
T Consensus 167 ~~~~~~~~-~~~--~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~------------------------- 218 (403)
T 3laf_A 167 GDSRVVVL-PSG--ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGL------------------------- 218 (403)
T ss_dssp TCCSEEEC-TTS--CEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCC-------------------------
T ss_pred CceEEEEc-CCc--eEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCc-------------------------
Confidence 2222222 222 599999999999999999999887643 4466666533210
Q ss_pred cccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCccc
Q psy2166 428 AQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQ 507 (805)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ 507 (805)
..++.+...+... .
T Consensus 219 -----------------------------------------------------------------~~~~~~~~~~~~~-~ 232 (403)
T 3laf_A 219 -----------------------------------------------------------------HRQLYFLQRPSNV-I 232 (403)
T ss_dssp -----------------------------------------------------------------CEEEEEEECCCCE-E
T ss_pred -----------------------------------------------------------------ccCceEecCCCce-E
Confidence 0112233333333 3
Q ss_pred ccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEE
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 587 (805)
+.+|+.++|.|.+. +.|.+.++|+++|..+...........+
T Consensus 233 ~~~g~~~~l~C~~~--~~p~~~~~W~~~~~~~~~~~~~~~~~~~------------------------------------ 274 (403)
T 3laf_A 233 AIEGKDAVLECCVS--GYPPPSFTWLRGEEVIQLRSKKYSLLGG------------------------------------ 274 (403)
T ss_dssp EETTSCEEECCEEE--EESCCEEEEEETTEECCCSSSSEEEETT------------------------------------
T ss_pred ecCCCcEEEEEEcC--CCCCCeEEEEECCeeccCCCceEEECCc------------------------------------
Confidence 78999999999999 6688899999999877533211110000
Q ss_pred EeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeecccc
Q psy2166 588 CVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNL 667 (805)
Q Consensus 588 V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~ 667 (805)
+ .|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus 275 -------------------------------------~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~---- 311 (403)
T 3laf_A 275 -------------------------------------S--NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV---- 311 (403)
T ss_dssp -------------------------------------T--EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE----
T ss_pred -------------------------------------c--EEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEEC----
Confidence 0 166777777777777777777777777777777763
Q ss_pred ccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeC
Q psy2166 668 ILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF 747 (805)
Q Consensus 668 ~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~ 747 (805)
+|.|...+.+. .+.+|+.++|.|.+. |.|.|.|+|+|+|..+..+.++.+.. +
T Consensus 312 -----------------------~p~~~~~~~~~-~~~~g~~v~l~C~~~--g~p~p~v~W~~~g~~~~~~~~~~~~~-~ 364 (403)
T 3laf_A 312 -----------------------PPWFLNHPSNL-YAYESMDIEFECAVS--GKPVPTVNWMKNGDVVIPSDYFQIVG-G 364 (403)
T ss_dssp -----------------------EEEEEECCCCE-ECCTTCCEEECCEEE--EESCCEEEEEETTEECCCSSSEEEET-T
T ss_pred -----------------------CCcEeecCcce-EEecCCeEEEEEEEe--eccCCEEEEEECCEECCCCCcEEEec-C
Confidence 56666666666 899999999999998 89999999999999998888776543 3
Q ss_pred cEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 748 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 748 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
+ .|.|.++..+|+|.|+|.|.|.+|..+.++.|.|..
T Consensus 365 ~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 401 (403)
T 3laf_A 365 S--NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPK 401 (403)
T ss_dssp T--EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCC
T ss_pred c--cEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeC
Confidence 3 699999999999999999999999999999999864
|
| >3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=360.34 Aligned_cols=351 Identities=16% Similarity=0.179 Sum_probs=235.6
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTST 154 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~ 154 (805)
.++|.+|+.++|.|.+. +.|.+.|.|++++..+....++.. ......+|.|.+++.+|+|.|+|.|.|..|.....+
T Consensus 57 ~v~V~~G~~v~L~C~v~--g~P~p~i~W~~~~~~l~~~~~~~~-~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~~~~~ 133 (423)
T 3qs7_E 57 AVEVDVSASITLQVLVD--APGNISCLWVFKHSSLNCQPHFDL-QNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILF 133 (423)
T ss_dssp EEEECSSCCEEEEEECS--CCSSCEEEEEETTEEECCCCBC------CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEE
T ss_pred cEEEecCCcEEEEEEEE--cCCCCeEEEEECCCccCccceecc-ccceEEEEEEeecCcccCEEEEEEEEcCCCcEEEEE
Confidence 78999999999999998 688999999999988765433221 112345799999999999999999999999888888
Q ss_pred EEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCCC
Q psy2166 155 TIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQT 234 (805)
Q Consensus 155 ~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~ 234 (805)
.|.|..++ .+....+. .+..|+.+.|.|.+ .|.|.
T Consensus 134 ~l~V~~~p-----------------------------------------~~~~~~p~--~~~~~~~~~L~C~a--~G~P~ 168 (423)
T 3qs7_E 134 TVSIRNTL-----------------------------------------LYTLRRPY--FRKMENQDALVCIS--ESVPE 168 (423)
T ss_dssp EEEEC----------------------------------------------CEEEEE--EEECSSSSCEEEEE--EESSC
T ss_pred EEEEecCc-----------------------------------------cccccCCc--EeccCCceEEEEEE--eeecC
Confidence 88876322 11100001 13457778899998 68999
Q ss_pred eEEEEEECCEEccCCCc-EEE-EEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEE-EEEEEEeccCCCCCCeEEecCC
Q psy2166 235 MTVEFLYNGKPIEASHR-IRT-VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI-SVNLECVDKSKGQPPKFTSHIK 311 (805)
Q Consensus 235 ~~i~W~k~g~~l~~~~~-~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~-~~~l~v~~~~~~~~p~~~~~~~ 311 (805)
|.|.|+|++..+..... ... ..... ..| ..+|+|.|+|.|.|..|.... .+.|.|... |.+ .+.
T Consensus 169 P~i~W~k~~~~~~~~~~~~~~~~~~~~-~~l-----~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~-----p~~--~~~ 235 (423)
T 3qs7_E 169 PIVEWVLCDSQGESCKEESPAVVKKEE-KVL-----HELFGTDIRCCARNELGRECTRLFTIDLNQT-----PQT--TLP 235 (423)
T ss_dssp CEEEEEEC-------------CEEECC-SEE-----CCCCSSCEEEEEECSSCEEEEECEEEESSSC-----CCS--STT
T ss_pred CeEEEEECCCCCccccccccccccccc-eEE-----ecccCeEEEEEEEcCCCCcceeeEEEEEecC-----Ccc--CCC
Confidence 99999999876532110 000 01111 111 578999999999999887654 355655432 222 111
Q ss_pred CcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEE------eCcEEEEEEcccCcCCceEEEEEEEeCc
Q psy2166 312 SLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVS------DFGFVVMDIAYVQSHDSGEYVCRAWNKY 385 (805)
Q Consensus 312 ~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~------~~~~~~l~i~~v~~~d~G~Y~C~a~n~~ 385 (805)
...+.+|+.+.|.|.+.+ ..|.+.|.|+|+|..+.....+.... ......|.|.++..+|+|.|+|.|.|.
T Consensus 236 -~~~v~~G~~v~L~C~~~g-~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~- 312 (423)
T 3qs7_E 236 -QLFLKVGEPLWIRCKAVH-VNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH- 312 (423)
T ss_dssp -EEEEETTSCEEEEEEEEE-SSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE-
T ss_pred -ceEEeCCCeEEEEEEEEc-CCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC-
Confidence 233789999999999983 37778999999999886543221111 112236999999999999999999987
Q ss_pred eeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccC
Q psy2166 386 GEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT 465 (805)
Q Consensus 386 g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (805)
....+.|.|..
T Consensus 313 --~~~~~~L~V~~------------------------------------------------------------------- 323 (423)
T 3qs7_E 313 --PSQSALVTIVE------------------------------------------------------------------- 323 (423)
T ss_dssp --EEEEEEEEEES-------------------------------------------------------------------
T ss_pred --CCceEEEEEEe-------------------------------------------------------------------
Confidence 56667777753
Q ss_pred CCCceEEEeecccCCCCCCcccccCCCCCCCceEecC-CCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc
Q psy2166 466 DPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQI-SDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR 544 (805)
Q Consensus 466 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~ 544 (805)
+|.+...+ .....+.+|+++.|.|.+. |.|.|.|+|+|||+.|..+.+
T Consensus 324 -----------------------------~p~i~~~~~~~~~~v~~G~~v~l~C~~~--g~P~p~i~W~k~g~~l~~~~~ 372 (423)
T 3qs7_E 324 -----------------------------KGFINATNSSEDYEIDQYEEFCFSVRFK--AYPQIRCTWTFSRKSFPCEQK 372 (423)
T ss_dssp -----------------------------SCEEEEC---CEECCCTTCCCCEEEEEE--EESCCEEEEEETTEEEECBCC
T ss_pred -----------------------------CCcceEcCCCccEEecCCCeEEEEEEEE--EcCCCeEEEEECCEECCCccc
Confidence 33333322 1233478999999999999 678899999999999965431
Q ss_pred eEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeeeee
Q psy2166 545 YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTN 593 (805)
Q Consensus 545 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~ 593 (805)
.. .+.. .+.+.....+|+|.|+|.|.|..|..+.++.|.|...+.
T Consensus 373 ~~---~~~~-~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~ 417 (423)
T 3qs7_E 373 GL---DNGY-SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTK 417 (423)
T ss_dssp BC---SSSS-EEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC------
T ss_pred cc---cCCc-EEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCCc
Confidence 00 0111 122244567899999999999999999999999988765
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-41 Score=366.27 Aligned_cols=376 Identities=21% Similarity=0.317 Sum_probs=264.3
Q ss_pred CCCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEc----CCCCcccEE
Q psy2166 200 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEIL----GTKIEDTGV 275 (805)
Q Consensus 200 ~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~----~~~~~d~G~ 275 (805)
..||.|...+.....+.+|+.++|.|.+ .|.|.+.+.|+|+|..+................|.|. +++.+|+|.
T Consensus 14 ~~~P~i~~~~~~~~~v~~G~~v~l~C~~--~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~ 91 (404)
T 3p3y_A 14 TQPPTITKQSAKDHIVDPRDNILIECEA--KGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGE 91 (404)
T ss_dssp CCCCCEEEECCTTCEECSSSCCCCCEEE--CCSSCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEE
T ss_pred cCCCcccccCCccEEEcCCCCEEEEEEe--cCCCCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEE
Confidence 3678888655444468999999999998 7889999999999998864322211111122345554 788999999
Q ss_pred EEEEEEcCCeeE-EEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEE-ccCCCce
Q psy2166 276 YTCRATNKWGQA-EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKP-IFHKNRV 353 (805)
Q Consensus 276 Y~C~~~n~~g~~-~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~-l~~~~~~ 353 (805)
|+|.+.|..|.. +..+.|.|.. +|.+.........+.+|+.++|.|.+. .+.|.+.+.|++++.. +....++
T Consensus 92 Y~C~a~n~~g~~~s~~~~l~V~~-----~p~~~~~~~~~~~v~~G~~v~l~C~~~-~~~p~~~v~W~~~~~~~~~~~~~~ 165 (404)
T 3p3y_A 92 YQCFARNKFGTALSNRIRLQVSK-----SPLWPKENLDPVVVQEGAPLTLQCNPP-PGLPSPVIFWMSSSMEPITQDKRV 165 (404)
T ss_dssp EEEEEECSSCEEEEEEEEEEECC-----CCCCCCCCCCCEEEETTSCEEECCCCC-CCSSCCEEEEECTTSCBCCCCSSE
T ss_pred EEEEEEcCCCeEeeeeEEEEEec-----cCccccCCCCCeEEccCCcEEEEeCCC-CCCCCCeEEEeCCCccccCCCCcE
Confidence 999999998876 4667777764 333222222223488999999999983 2888999999998744 3334444
Q ss_pred EEEEeCcEEEEEEcccCcCC-ceEEEEEEEeCceeeEEE---EEEEEEecccccccCCChhHHHHHHHhhhccCCCCccc
Q psy2166 354 KMVSDFGFVVMDIAYVQSHD-SGEYVCRAWNKYGEDFTR---ATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQ 429 (805)
Q Consensus 354 ~~~~~~~~~~l~i~~v~~~d-~G~Y~C~a~n~~g~~~~~---~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 429 (805)
....+ + .|.|.++..+| +|.|+|.|.|..|..... ..+.|...+.
T Consensus 166 ~~~~~-~--~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~---------------------------- 214 (404)
T 3p3y_A 166 SQGHN-G--DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRG---------------------------- 214 (404)
T ss_dssp EECTT-S--CEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSC----------------------------
T ss_pred EEcCC-C--cEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCC----------------------------
Confidence 43222 2 48899999999 599999999988754322 3444432111
Q ss_pred cCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCC--Cccc
Q psy2166 430 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQIS--DVTQ 507 (805)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~--~~~~ 507 (805)
....+|.+..... ....
T Consensus 215 -------------------------------------------------------------~~~~~p~~~~~~~~~~~~~ 233 (404)
T 3p3y_A 215 -------------------------------------------------------------VAERTPSFMYPQGTASSQM 233 (404)
T ss_dssp -------------------------------------------------------------CCCCCCCBSSSCSSEEEEE
T ss_pred -------------------------------------------------------------ccccCCccccccCCCCCce
Confidence 0123344433221 1233
Q ss_pred ccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEE
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 587 (805)
+.+|+.++|.|.+. |.|.+.++|+|+|..+..+.. .....++ .
T Consensus 234 ~~~G~~v~l~C~~~--g~p~~~v~W~~~~~~~~~~~~-~~~~~~~--~-------------------------------- 276 (404)
T 3p3y_A 234 VLRGMDLLLECIAS--GVPTPDIAWYKKGGDLPSDKA-KFENFNK--A-------------------------------- 276 (404)
T ss_dssp EETTSCEEEECCBC--CSSCCEEEEEETTBCCCTTTE-EEEGGGT--E--------------------------------
T ss_pred EecCCCEEEEEEEC--CCCCCcEEEEECCEECCCCcc-cccccCc--e--------------------------------
Confidence 78999999999998 778889999999988755432 1111001 1
Q ss_pred EeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeecccc
Q psy2166 588 CVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNL 667 (805)
Q Consensus 588 V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~ 667 (805)
|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus 277 -----------------------------------------L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~---- 311 (404)
T 3p3y_A 277 -----------------------------------------LRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA---- 311 (404)
T ss_dssp -----------------------------------------EEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEE----
T ss_pred -----------------------------------------EEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeC----
Confidence 55666666666666666666666666666666653
Q ss_pred ccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCC-eEEEee
Q psy2166 668 ILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR-IRTVHA 746 (805)
Q Consensus 668 ~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~-~~~~~~ 746 (805)
+|.|...+.+. .+.+|+.++|.|.+. |+|.|.|+|+|+|..+..... ......
T Consensus 312 -----------------------~p~~~~~~~~~-~v~~g~~~~l~C~~~--g~p~p~v~W~~~g~~~~~~~~~~~~~~~ 365 (404)
T 3p3y_A 312 -----------------------APYWLDEPKNL-ILAPGEDGRLVCRAN--GNPKPTVQWMVNGEPLQSAPPNPNREVA 365 (404)
T ss_dssp -----------------------EEEEEECCCCE-EECTTCCEEEECEEE--EESCCEEEEEETTEEGGGSCCCTTEEEE
T ss_pred -----------------------CCeeeccCCcc-eeecCCcEEEEEEcc--ccCCCceEEEECCEecCCCCCCceEEec
Confidence 45555556666 889999999999999 999999999999999986642 222334
Q ss_pred CcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 747 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 747 ~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
++ .|.|.++..+|+|.|+|.|.|.+|....++.|.|.
T Consensus 366 ~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 402 (404)
T 3p3y_A 366 GD--TIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402 (404)
T ss_dssp TT--EEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC
T ss_pred CC--EEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEE
Confidence 44 79999999999999999999999999999999985
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-41 Score=361.01 Aligned_cols=358 Identities=19% Similarity=0.286 Sum_probs=261.3
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEE-CCEecCCCCceEEEecCcEEEEEEcccccCC------Ce
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF-NGKPLELGSRFKTTADFGFVTLDLTEVYDRD------QG 137 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k-~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D------~G 137 (805)
+|.|+..+...+.+.+|+.++|.|.+. |.|.+.|+|+| ||..+....++.....++ +|.|.+++.+| +|
T Consensus 3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~--g~p~p~v~W~k~~g~~~~~~~~~~~~~~~~--~L~i~~~~~~d~~~~~d~G 78 (388)
T 2v5m_A 3 GPVFLKEPTNRIDFSNSTGAEIECKAS--GNPMPEIIWIRSDGTAVGDVPGLRQISSDG--KLVFPPFRAEDYRQEVHAQ 78 (388)
T ss_dssp EEEEEECCCSEEEEETTTCEEEECEEE--EESCCEEEEEETTSCBCCCBTTTBEECSTT--EEEECCCCGGGCCHHHHEE
T ss_pred CCchhhCCCceEEEEcCccEEEEEECC--CCCCCEEEEEcCCCCccccCCCceEEcCCc--eEEecccChhhccccccCc
Confidence 688888887667888999999999998 68889999999 888887654443333333 79999999997 99
Q ss_pred EEEEEEEeCCeeEE-EEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccC
Q psy2166 138 IYTCRAWNLAGETF-TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLS 216 (805)
Q Consensus 138 ~Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~ 216 (805)
.|+|.|.|..|... ....|.|..+ |.+...+... .+.
T Consensus 79 ~Y~C~a~n~~g~~~s~~~~v~v~~~-----------------------------------------p~~~~~~~~~-~v~ 116 (388)
T 2v5m_A 79 VYACLARNQFGSIISRDVHVRAVVA-----------------------------------------QYYEADVNKE-HVI 116 (388)
T ss_dssp EEEEEEEETTEEEECCCEEEEEECC-----------------------------------------CCCCCBCCCE-EEE
T ss_pred eEEEEEEccCCeEEecceEEEEccc-----------------------------------------cccccCccce-eee
Confidence 99999999988753 3455555432 2222222222 477
Q ss_pred CCceEEEEEEEeeCCC---CCeEEEEEECCEEccC-----CCcEEEEEEcCeEEEEEcCCCCccc-EEEEEEEEcCCee-
Q psy2166 217 EGEIAHFEASLIPVGD---QTMTVEFLYNGKPIEA-----SHRIRTVHAFGMVVLEILGTKIEDT-GVYTCRATNKWGQ- 286 (805)
Q Consensus 217 ~g~~~~l~C~~~~~~~---p~~~i~W~k~g~~l~~-----~~~~~~~~~~~~~~L~i~~~~~~d~-G~Y~C~~~n~~g~- 286 (805)
+|+.++|.|.+ .+. |.+.+.|++++..+.. ..++... .+ ..|.|.+++.+|+ |.|+|.+.|..+.
T Consensus 117 ~G~~v~l~C~~--~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~--~~L~i~~v~~~d~~G~Y~C~~~n~~~~~ 191 (388)
T 2v5m_A 117 RGNSAVIKCLI--PSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL-PS--GELHIREVGPEDGYKSYQCRTKHRLTGE 191 (388)
T ss_dssp TTSCEEECCBC--CTTTTTTEEEEEEEETTCCEECSSSCBTTTEEEC-TT--SCEEESSCCGGGGGCCEEEEEEETTTCC
T ss_pred cCCcEEEEEEC--cCCCCCCcceEEEEeCCCcccccccCCCCcEEEc-cC--CcEEEecCCccccCeeEEEEeccCCCCc
Confidence 99999999987 443 3489999999877632 2233222 12 3699999999999 9999999987533
Q ss_pred EEEE---EEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEc------cCCCceEEEE
Q psy2166 287 AEIS---VNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI------FHKNRVKMVS 357 (805)
Q Consensus 287 ~~~~---~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l------~~~~~~~~~~ 357 (805)
...+ ..+.|........|.+.........+.+|+.++|.|.+. +.|.+.|.|++++..+ ....++. .
T Consensus 192 ~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~--g~p~p~v~W~~~~~~~~~~~~~~~~~~~~--~ 267 (388)
T 2v5m_A 192 TRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQ--GFPAPSFRWYKFIEGTTRKQAVVLNDRVK--Q 267 (388)
T ss_dssp EEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCE--EESCCEEEEEEECTTSSCEEECCCSSSEE--E
T ss_pred eeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECC--CCCCCEEEEEecCCCCcccccccccCcee--c
Confidence 2222 234444321111122211112222377899999999997 7788999999975432 2233332 2
Q ss_pred eCcEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCC
Q psy2166 358 DFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAP 437 (805)
Q Consensus 358 ~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (805)
... .|.|.++..+|+|.|+|.|.|..|.....+.|.|..+
T Consensus 268 ~~~--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~-------------------------------------- 307 (388)
T 2v5m_A 268 VSG--TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAP-------------------------------------- 307 (388)
T ss_dssp ETT--EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEE--------------------------------------
T ss_pred ccC--EEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCC--------------------------------------
Confidence 223 6999999999999999999999999888888887543
Q ss_pred ceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEE
Q psy2166 438 KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE 517 (805)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~ 517 (805)
|.+...+... .+.+|+.++|.
T Consensus 308 ----------------------------------------------------------p~~~~~~~~~-~v~~g~~~~l~ 328 (388)
T 2v5m_A 308 ----------------------------------------------------------LSAKIDPPTQ-TVDFGRPAVFT 328 (388)
T ss_dssp ----------------------------------------------------------EEEEEESSEE-EECTTSCEEEE
T ss_pred ----------------------------------------------------------CccccCCCcE-EecCCCCEEEE
Confidence 3333333333 38899999999
Q ss_pred EEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 518 ARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 518 C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
|.+. |.|.+.|+|+|||..+..+. ..|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 329 C~~~--g~p~p~i~W~~~g~~i~~~~----------~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 387 (388)
T 2v5m_A 329 CQYT--GNPIKTVSWMKDGKAIGHSE----------SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387 (388)
T ss_dssp EEEE--EECCCEEEEEETTEECSCCS----------SEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred EEec--cccCCeEEEEECCEECccCC----------CEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence 9998 67888999999999986542 25999999999999999999999999999999887
|
| >2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-40 Score=370.23 Aligned_cols=399 Identities=14% Similarity=0.148 Sum_probs=266.4
Q ss_pred hhhhHHhhhhhhcCccccCCCCCC------------CC----cCCCeEEecCCCCceecCCCcEEEEEEEecCCCCC--c
Q psy2166 37 GLEKVQEVEHALAGKYQRQPSGPE------------ET----FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPN--L 98 (805)
Q Consensus 37 g~~~i~~~~~~d~g~y~c~~~~~~------------~~----~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~--~ 98 (805)
+.|.|.+++.+|+|.|+|.+.+.. .+ ..+|.+...+. ...+.+|+.++|.|.+. +.|. +
T Consensus 70 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~-~~~~~~g~~v~l~C~~~--g~~p~~~ 146 (523)
T 2rcj_C 70 ASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPP-SSEELQANKATLVCLIS--DFYPGAV 146 (523)
T ss_pred EEEEECCCChhhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCC-cccccCCCceEEEEEec--cccCCce
Confidence 468899999999999999766432 11 23455554443 44667899999999998 4443 4
Q ss_pred eEEEEECCEecCCCCceEEE---ecCc---EEEEEEcccccCCCeEEEEEEEeCCeeEEEEEEEEEeccccccccccCCC
Q psy2166 99 KIEWIFNGKPLELGSRFKTT---ADFG---FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPK 172 (805)
Q Consensus 99 ~v~W~k~g~~i~~~~~~~~~---~~~~---~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~ 172 (805)
.|+|+|||..+..+.++... .++. ...|.|.+++.+|+|.|+|.|.|..|.......+.+...
T Consensus 147 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~----------- 215 (523)
T 2rcj_C 147 TVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSA----------- 215 (523)
T ss_pred EEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCC-----------
Confidence 99999999988765443211 1221 236999999999999999999998776554443322110
Q ss_pred CcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCC-CCe-EEEEEECCEEccCCC
Q psy2166 173 GEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGD-QTM-TVEFLYNGKPIEASH 250 (805)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~-p~~-~i~W~k~g~~l~~~~ 250 (805)
...+|.+....+.. .+.+|+.+.|.|.+ .+. |.+ +|.|+|+|..+....
T Consensus 216 --------------------------~~~~P~v~~~~~~~-~~~~G~~~~l~C~~--~g~~P~p~~v~W~k~g~~~~~~~ 266 (523)
T 2rcj_C 216 --------------------------STKGPSVFPLAPSS-KSTSGGTAALGCLV--KDYFPQPVTVSWNSGALTSGVHT 266 (523)
T ss_pred --------------------------CCcCCEEEecCCCc-ccccCCceEEEEEE--eceeCCCeEEEEecCCcccceEe
Confidence 01345444222222 36799999999998 454 666 899999998764321
Q ss_pred cEEEEEEcC----eEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcc-cccCCCeEEEE
Q psy2166 251 RIRTVHAFG----MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLE-GLKDGDSAHFE 325 (805)
Q Consensus 251 ~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~-~~~~g~~~~l~ 325 (805)
.......++ .+.|.|.+++.+| |.|+|.|.|..|.......+.+. ..|.+........ .+.+|+.+.|.
T Consensus 267 ~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~-----~~P~~~~~~p~~~~~v~~g~~~~l~ 340 (523)
T 2rcj_C 267 FPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPL-----SLPSVFLFPPKPKDTLMISRTPEVT 340 (523)
T ss_pred CCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCC-----cCceEEecCCCchhhcccCCceEEE
Confidence 111111222 3589999999999 99999999999987766666654 2344333222222 26789999999
Q ss_pred EEEeecCCC----CcEEEEEECCEEccCCCceEE-EEeCc----EEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEE
Q psy2166 326 CTLTPVNDP----ELKVEWFHNGKPIFHKNRVKM-VSDFG----FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKC 396 (805)
Q Consensus 326 C~~~~~~~p----~~~v~W~~~g~~l~~~~~~~~-~~~~~----~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 396 (805)
|.+. +.+ .+.|+|+|+|..+........ ...++ ...|.|.++..+|+|.|+|.|.|..+.......+.+
T Consensus 341 C~~~--g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~ 418 (523)
T 2rcj_C 341 CVVV--DVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISK 418 (523)
T ss_pred EEEe--cccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEc
Confidence 9998 433 369999999999875443221 11122 235889999999999999999998776554444432
Q ss_pred EecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeec
Q psy2166 397 FGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSN 476 (805)
Q Consensus 397 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~ 476 (805)
.
T Consensus 419 ~------------------------------------------------------------------------------- 419 (523)
T 2rcj_C 419 A------------------------------------------------------------------------------- 419 (523)
T ss_pred c-------------------------------------------------------------------------------
Confidence 1
Q ss_pred ccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEE--EeeCCE-
Q psy2166 477 FFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT--FHDFGI- 553 (805)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~--~~~~~~- 553 (805)
..+..+|.+....+....+..|+ ++|.|.+.+...|.+.|+|+|||+++........ ..++..
T Consensus 420 -------------~~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~ 485 (523)
T 2rcj_C 420 -------------KGQPREPQVYTLPPSREEMTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFF 485 (523)
T ss_pred -------------cCCCCCCEEEEeCCChHHccCCc-eEEEEEEEeeECCCCEEEEEECCEECCCeeeccceeCCCCCEE
Confidence 01245677666554443344555 9999999953334459999999999975433222 223322
Q ss_pred --EEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 554 --VILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 554 --~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
+.|.|.....+|+|.|+|.|.|....
T Consensus 486 ~~~~l~v~~~~~~~~g~Y~C~a~n~~l~ 513 (523)
T 2rcj_C 486 LYSKLTVDKSRWQQGNVFSCSVMHEALH 513 (523)
T ss_pred EEEEEEEChHHccCCCeEEEEEEcCCcC
Confidence 34666666667899999999997643
|
| >3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-41 Score=363.07 Aligned_cols=375 Identities=18% Similarity=0.273 Sum_probs=272.9
Q ss_pred CCcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCC--CceEEEecCcEEEEEEc----ccccC
Q psy2166 61 ETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG--SRFKTTADFGFVTLDLT----EVYDR 134 (805)
Q Consensus 61 ~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~--~~~~~~~~~~~~~L~I~----~~~~~ 134 (805)
....+|.+....+..+.+.+|+.++|.|.+. |.|.+.|+|+|||..+... .++.+...++ +|.|. +++.+
T Consensus 12 ~~~~~P~i~~~~~~~~~v~~G~~v~l~C~~~--g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~--~l~i~~~~~~~~~~ 87 (404)
T 3p3y_A 12 ELTQPPTITKQSAKDHIVDPRDNILIECEAK--GNPAPSFHWTRNSRFFNIAKDPRVSMRRRSG--TLVIDFRSGGRPEE 87 (404)
T ss_dssp -CCCCCCEEEECCTTCEECSSSCCCCCEEEC--CSSCCEEEEEETTEECCGGGCSSCBCCSSSC--CCBCCCTTTCCTTS
T ss_pred hccCCCcccccCCccEEEcCCCCEEEEEEec--CCCCCeEEEEECCEEeeeecCCcceEecCCc--eEEEEeccCCCCcc
Confidence 4557888888766688999999999999998 6889999999999988643 3444433333 45554 88999
Q ss_pred CCeEEEEEEEeCCeeEE-EEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccccccc
Q psy2166 135 DQGIYTCRAWNLAGETF-TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLS 213 (805)
Q Consensus 135 D~G~Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 213 (805)
|+|.|+|.|.|..|... ....|.|...+.. ........
T Consensus 88 D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~-----------------------------------------~~~~~~~~ 126 (404)
T 3p3y_A 88 YEGEYQCFARNKFGTALSNRIRLQVSKSPLW-----------------------------------------PKENLDPV 126 (404)
T ss_dssp SCEEEEEEEECSSCEEEEEEEEEEECCCCCC-----------------------------------------CCCCCCCE
T ss_pred CCEEEEEEEEcCCCeEeeeeEEEEEeccCcc-----------------------------------------ccCCCCCe
Confidence 99999999999988764 4566777543311 11111112
Q ss_pred ccCCCceEEEEEEEeeCCCCCeEEEEEECCEEc-cCCCcEEEEEEcCeEEEEEcCCCCcc-cEEEEEEEEcCCeeEE---
Q psy2166 214 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI-EASHRIRTVHAFGMVVLEILGTKIED-TGVYTCRATNKWGQAE--- 288 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l-~~~~~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~~~n~~g~~~--- 288 (805)
.+.+|+.++|.|.+. .+.|.+.+.|++++... ....++.. ..+ ..|.|.+++.+| +|.|+|.+.|..+...
T Consensus 127 ~v~~G~~v~l~C~~~-~~~p~~~v~W~~~~~~~~~~~~~~~~-~~~--~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~ 202 (404)
T 3p3y_A 127 VVQEGAPLTLQCNPP-PGLPSPVIFWMSSSMEPITQDKRVSQ-GHN--GDLYFSNVMLQDMQTDYSCNARFHFTHTIQQK 202 (404)
T ss_dssp EEETTSCEEECCCCC-CCSSCCEEEEECTTSCBCCCCSSEEE-CTT--SCEEESSCCSGGGSSCBEEEEECTTTCCEEEC
T ss_pred EEccCCcEEEEeCCC-CCCCCCeEEEeCCCccccCCCCcEEE-cCC--CcEEEEeeeeccCCcceEEEEEeccccceecc
Confidence 478999999999863 47788999999987543 33344332 222 369999999999 5999999999876532
Q ss_pred EEEEEEEeccC--CCCCCeEEecCC--CcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCcEEEE
Q psy2166 289 ISVNLECVDKS--KGQPPKFTSHIK--SLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVM 364 (805)
Q Consensus 289 ~~~~l~v~~~~--~~~~p~~~~~~~--~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~l 364 (805)
..+.+.+.... ...+|.+..... ....+.+|+.+.|.|.+. +.|.+.+.|+++|..+..... .....+. .|
T Consensus 203 ~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~--g~p~~~v~W~~~~~~~~~~~~-~~~~~~~--~L 277 (404)
T 3p3y_A 203 NPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIAS--GVPTPDIAWYKKGGDLPSDKA-KFENFNK--AL 277 (404)
T ss_dssp CCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBC--CSSCCEEEEEETTBCCCTTTE-EEEGGGT--EE
T ss_pred CceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEEC--CCCCCcEEEEECCEECCCCcc-cccccCc--eE
Confidence 22444443221 112333322211 122377899999999987 889999999999998865543 2222222 69
Q ss_pred EEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeec
Q psy2166 365 DIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQIS 444 (805)
Q Consensus 365 ~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (805)
.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus 278 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~---------------------------------------------- 311 (404)
T 3p3y_A 278 RITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA---------------------------------------------- 311 (404)
T ss_dssp EESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEE----------------------------------------------
T ss_pred EEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeC----------------------------------------------
Confidence 9999999999999999999999988888888753
Q ss_pred ceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCC
Q psy2166 445 DVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT 524 (805)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g 524 (805)
+|.+...+.... +.+|+.++|.|.+. |
T Consensus 312 --------------------------------------------------~p~~~~~~~~~~-v~~g~~~~l~C~~~--g 338 (404)
T 3p3y_A 312 --------------------------------------------------APYWLDEPKNLI-LAPGEDGRLVCRAN--G 338 (404)
T ss_dssp --------------------------------------------------EEEEEECCCCEE-ECTTCCEEEECEEE--E
T ss_pred --------------------------------------------------CCeeeccCCcce-eecCCcEEEEEEcc--c
Confidence 344444444433 88999999999999 6
Q ss_pred CCCcEEEEEECCEEccCCCc-eEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEee
Q psy2166 525 DPDLVVEWFYNGKKLPHGHR-YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVS 590 (805)
Q Consensus 525 ~p~~~v~W~~~g~~l~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 590 (805)
.|.+.++|+++|..+..... ......++ .|.|.++..+|+|.|+|.|.|..|.....+.|.|.+
T Consensus 339 ~p~p~v~W~~~g~~~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~d 403 (404)
T 3p3y_A 339 NPKPTVQWMVNGEPLQSAPPNPNREVAGD--TIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403 (404)
T ss_dssp ESCCEEEEEETTEEGGGSCCCTTEEEETT--EEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC-
T ss_pred cCCCceEEEECCEecCCCCCCceEEecCC--EEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence 78889999999999975431 11222333 599999999999999999999999999999998864
|
| >2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-41 Score=363.94 Aligned_cols=365 Identities=21% Similarity=0.323 Sum_probs=267.0
Q ss_pred CCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEE-CCEEccCCCcEEEEEEcCeEEEEEcCCCCcc------c
Q psy2166 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY-NGKPIEASHRIRTVHAFGMVVLEILGTKIED------T 273 (805)
Q Consensus 201 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k-~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d------~ 273 (805)
.+|.|...+.+...+.+|+.++|.|.+ .|.|.++|.|+| +|..+.....+.....++ .|.|.+++.+| +
T Consensus 2 ~~P~f~~~p~~~~~~~~G~~v~l~C~~--~g~p~p~v~W~k~~g~~~~~~~~~~~~~~~~--~L~i~~~~~~d~~~~~d~ 77 (388)
T 2v5m_A 2 KGPVFLKEPTNRIDFSNSTGAEIECKA--SGNPMPEIIWIRSDGTAVGDVPGLRQISSDG--KLVFPPFRAEDYRQEVHA 77 (388)
T ss_dssp EEEEEEECCCSEEEEETTTCEEEECEE--EEESCCEEEEEETTSCBCCCBTTTBEECSTT--EEEECCCCGGGCCHHHHE
T ss_pred CCCchhhCCCceEEEEcCccEEEEEEC--CCCCCCEEEEEcCCCCccccCCCceEEcCCc--eEEecccChhhccccccC
Confidence 358888888776668899999999998 578889999999 888887554433333333 69999999987 9
Q ss_pred EEEEEEEEcCCeeE-EEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCC---CcEEEEEECCEEccC
Q psy2166 274 GVYTCRATNKWGQA-EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDP---ELKVEWFHNGKPIFH 349 (805)
Q Consensus 274 G~Y~C~~~n~~g~~-~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p---~~~v~W~~~g~~l~~ 349 (805)
|.|+|.|.|..|.. +..+.+.+. .+|.+...+.... +.+|+.++|.|.+. +.+ .+.+.|++++..+..
T Consensus 78 G~Y~C~a~n~~g~~~s~~~~v~v~-----~~p~~~~~~~~~~-v~~G~~v~l~C~~~--~~~~~~~~~v~W~~~~~~~~~ 149 (388)
T 2v5m_A 78 QVYACLARNQFGSIISRDVHVRAV-----VAQYYEADVNKEH-VIRGNSAVIKCLIP--SFVADFVEVVSWHTDEEENYF 149 (388)
T ss_dssp EEEEEEEEETTEEEECCCEEEEEE-----CCCCCCCBCCCEE-EETTSCEEECCBCC--TTTTTTEEEEEEEETTCCEEC
T ss_pred ceEEEEEEccCCeEEecceEEEEc-----cccccccCcccee-eecCCcEEEEEECc--CCCCCCcceEEEEeCCCcccc
Confidence 99999999998864 345666655 3444444444433 88999999999997 443 378999999876532
Q ss_pred -----CCceEEEEeCcEEEEEEcccCcCCc-eEEEEEEEeCceeeEE-E---EEEEEEecccccccCCChhHHHHHHHhh
Q psy2166 350 -----KNRVKMVSDFGFVVMDIAYVQSHDS-GEYVCRAWNKYGEDFT-R---ATIKCFGKGGVYLDSLQPESLARIRELE 419 (805)
Q Consensus 350 -----~~~~~~~~~~~~~~l~i~~v~~~d~-G~Y~C~a~n~~g~~~~-~---~~l~V~~~~~~~~~~~~p~~~~~~~~~~ 419 (805)
..++.+..+ + .|.|.++..+|+ |.|+|.+.|..+.... . ..+.|..+..
T Consensus 150 ~~~~~~~~~~~~~~-~--~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~------------------ 208 (388)
T 2v5m_A 150 PGAEYDGKYLVLPS-G--ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPIS------------------ 208 (388)
T ss_dssp SSSCBTTTEEECTT-S--CEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCS------------------
T ss_pred cccCCCCcEEEccC-C--cEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCc------------------
Confidence 234433322 2 599999999999 9999999998643322 1 2344432110
Q ss_pred hccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceE
Q psy2166 420 NAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFI 499 (805)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 499 (805)
..+|.+.
T Consensus 209 -------------------------------------------------------------------------~~~p~~~ 215 (388)
T 2v5m_A 209 -------------------------------------------------------------------------SSAPRTP 215 (388)
T ss_dssp -------------------------------------------------------------------------CEEEECC
T ss_pred -------------------------------------------------------------------------CCCCcCc
Confidence 0111111
Q ss_pred ecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 500 TQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 500 ~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
........+.+|+.++|.|.+. |.|.+.|+|+|++..+.... .+.
T Consensus 216 ~~~~~~~~v~~G~~v~l~C~~~--g~p~p~v~W~~~~~~~~~~~-------------~~~-------------------- 260 (388)
T 2v5m_A 216 ALVQKPLELMVAHTISLLCPAQ--GFPAPSFRWYKFIEGTTRKQ-------------AVV-------------------- 260 (388)
T ss_dssp SSCCCCEEEETTSCEEECCCCE--EESCCEEEEEEECTTSSCEE-------------ECC--------------------
T ss_pred cccCCceEEeeCCcEEEEEECC--CCCCCEEEEEecCCCCcccc-------------ccc--------------------
Confidence 1111122377899999999998 66888999999764221100 000
Q ss_pred eEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEE
Q psy2166 580 DVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659 (805)
Q Consensus 580 ~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 659 (805)
.+.++.. .++ .|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus 261 ----------------------------------~~~~~~~--~~~--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 302 (388)
T 2v5m_A 261 ----------------------------------LNDRVKQ--VSG--TLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 302 (388)
T ss_dssp ----------------------------------CSSSEEE--ETT--EEEESSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred ----------------------------------ccCceec--ccC--EEEECcCCHHHCeEEEEEEecCCCceeEEEEE
Confidence 0000000 011 38999999999999999999999999999999
Q ss_pred EEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCC
Q psy2166 660 KCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH 739 (805)
Q Consensus 660 ~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~ 739 (805)
.|.. ||.+...+.+. .+.+|+.+.|.|.+. |+|.|.|+|+|||..+..+.
T Consensus 303 ~V~~---------------------------~p~~~~~~~~~-~v~~g~~~~l~C~~~--g~p~p~i~W~~~g~~i~~~~ 352 (388)
T 2v5m_A 303 TVTA---------------------------PLSAKIDPPTQ-TVDFGRPAVFTCQYT--GNPIKTVSWMKDGKAIGHSE 352 (388)
T ss_dssp EEEE---------------------------EEEEEEESSEE-EECTTSCEEEEEEEE--EECCCEEEEEETTEECSCCS
T ss_pred EEeC---------------------------CCccccCCCcE-EecCCCCEEEEEEec--cccCCeEEEEECCEECccCC
Confidence 9985 45566666666 899999999999998 99999999999999987543
Q ss_pred CeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 740 RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 740 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
+ .|.|.++..+|+|.|+|.|.|.+|....+++|+|
T Consensus 353 --------~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 387 (388)
T 2v5m_A 353 --------S--VLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387 (388)
T ss_dssp --------S--EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred --------C--EEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence 2 6999999999999999999999999999999987
|
| >3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-41 Score=373.18 Aligned_cols=410 Identities=14% Similarity=0.141 Sum_probs=260.8
Q ss_pred EEEEEEEEecCCc-----eeccccCC-----C--Cc---hhhhhHHhhhhhhcCccccCCCCCCCCc-------CCCeEE
Q psy2166 12 TTSGTLKCLGQKD-----IYLETQHP-----M--GA---AGLEKVQEVEHALAGKYQRQPSGPEETF-------AKPVFI 69 (805)
Q Consensus 12 ~~~~~l~~~~~~~-----~~~~~~~~-----~--~~---~g~~~i~~~~~~d~g~y~c~~~~~~~~~-------~~p~~~ 69 (805)
..+++|.|..... .|+..+.+ . .. .-.|.|.+++.+|+|.|+|.+.+..... ..|.+.
T Consensus 63 g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~v~v~~~~~ 142 (527)
T 3qs9_E 63 SASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLL 142 (527)
T ss_dssp SCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEEEEEEEEEEC----
T ss_pred cccEEEEEEEecCCceeEEEEecCCccCcccccCCCcceEEEEEECcCChhhCeeEEEEEEeccccEEEEEEEEECCcee
Confidence 3568899987542 34432221 1 10 1127799999999999999876543221 112222
Q ss_pred ecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCee
Q psy2166 70 VPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGE 149 (805)
Q Consensus 70 ~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~ 149 (805)
..+........|+.++|.|.+. |.|.|.|+|++++..+..... ............++.+|+|.|+|.|.|..|.
T Consensus 143 ~~~~~p~~~~~~~~~~L~C~a~--G~P~P~i~W~~~~~~~~~~~~----~~~~~~~~~~~~~~~~d~G~Y~C~A~N~~G~ 216 (527)
T 3qs9_E 143 YTLRRPYFRKMENQDALVCISE--SVPEPIVEWVLCDSQGESCKE----ESPAVVKKEEKVLHELFGTDIRCCARNELGR 216 (527)
T ss_dssp -CEEEEEEEECSSSSCEEEEEE--ESSCCEEEEEEC-----------------CEEECCSEECCCCSSCEEEEEECSSCE
T ss_pred eccCCCcEEecCCceEEEEEEc--eecCCeEEEEECCCCCccccc----cCCcEEEEeeeeccccCCEEEEEEEEeCCCc
Confidence 2222223445688889999998 789999999999876542111 1111112334456689999999999999988
Q ss_pred EEEE-EEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEe
Q psy2166 150 TFTS-TTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLI 228 (805)
Q Consensus 150 ~~~~-~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~ 228 (805)
.... ..|.|..++ .+ .+.+ ..+.+|+.+.|.|.+.
T Consensus 217 ~~~~~~~l~V~~~p-----------------------------------------~~--~p~~-~~v~~G~~v~L~C~~~ 252 (527)
T 3qs9_E 217 ECTRLFTIDLNQTP-----------------------------------------QT--TLPQ-LFLKVGEPLWIRCKAV 252 (527)
T ss_dssp EEEECEEEESSSCC-----------------------------------------CC--SCCE-EEECTTSCEEEEEEEE
T ss_pred ccceEEEEEEeccC-----------------------------------------cc--CCCc-eEEeCCCeEEEEEEEc
Confidence 7654 555554322 11 1112 2478999999999984
Q ss_pred eCCCCCeEEEEEECCEEccCCCcEEEEE------EcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEeccCCCC
Q psy2166 229 PVGDQTMTVEFLYNGKPIEASHRIRTVH------AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQ 302 (805)
Q Consensus 229 ~~~~p~~~i~W~k~g~~l~~~~~~~~~~------~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~ 302 (805)
.+.|.+.|+|+|+|..+.....+.... ......|.|.+++.+|+|.|+|.|.|. ....+.|.|. .
T Consensus 253 -~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~-----~ 323 (527)
T 3qs9_E 253 -HVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIV-----E 323 (527)
T ss_dssp -ESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC------
T ss_pred -cCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEE-----c
Confidence 278899999999999876654332211 112357999999999999999999987 5666777776 3
Q ss_pred CCeEEecCC-CcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCcEEEEEEcccCcCCceEEEEEE
Q psy2166 303 PPKFTSHIK-SLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRA 381 (805)
Q Consensus 303 ~p~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a 381 (805)
+|.+...+. ....+.+|+.+.|.|.+. +.|.|.|+|+|+|..+....+... + ...|.|.++..+|+|.|+|.|
T Consensus 324 ~p~i~~~~~~~~~~v~~G~~v~L~C~~~--g~P~p~i~W~k~g~~l~~~~~~~~--~--~~~L~I~~v~~~D~G~YtC~A 397 (527)
T 3qs9_E 324 KGFINATNSSEDYEIDQYEEFCFSVRFK--AYPQIRCTWTFSRKSFPCEQKGLD--N--GYSISKFCNHKHQPGEYIFHA 397 (527)
T ss_dssp -CEEECCCSCCEECCCTTCCCCEEEEEE--EESCCEEEEEETTEEEECBCCBCS--S--SSEEEEECCCTTCCSCEEEEE
T ss_pred cCccccccCcccEEEcCCCeEEEEEEEE--ecCCCEEEEEECCEECcCCccccc--C--CcEEEEecCCcccCEEEEEEE
Confidence 444443332 223478899999999998 788899999999999875544221 2 236889999999999999999
Q ss_pred EeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEE
Q psy2166 382 WNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARL 461 (805)
Q Consensus 382 ~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (805)
.|..|.....+.|.|.
T Consensus 398 ~N~~g~~~~~~~L~V~---------------------------------------------------------------- 413 (527)
T 3qs9_E 398 ENDDAQFTKMFTLNIR---------------------------------------------------------------- 413 (527)
T ss_dssp EETTEEEEEEEEEC------------------------------------------------------------------
T ss_pred EeCCCcEEEEEEEEEe----------------------------------------------------------------
Confidence 9999998888877763
Q ss_pred eccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccC
Q psy2166 462 TPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPH 541 (805)
Q Consensus 462 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~ 541 (805)
.+|.|..... | .+|.|.+. |.|.|.|+|++++.....
T Consensus 414 --------------------------------~~P~i~~~~~-------~--~~l~C~a~--g~P~p~i~W~~~~~~~~~ 450 (527)
T 3qs9_E 414 --------------------------------RKPQVLAEAS-------A--SQASCFSD--GYPLPSWTWKKCSDKSPN 450 (527)
T ss_dssp --------------------------------CCCEEEECCC-------C--E---EEEE--CSSCCEEEEECCC-----
T ss_pred --------------------------------cCCeEEEeCC-------C--CEEEEEEE--EEcCCeEEEEECCCCcCC
Confidence 5566654321 2 35899999 789999999988765421
Q ss_pred CCc------e-----EEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeeeee
Q psy2166 542 GHR------Y-----RTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTN 593 (805)
Q Consensus 542 ~~~------~-----~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~ 593 (805)
... . ..........+.|.-...+|+|.|+|.|.|..|.....+.|.|..+-.
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~C~A~N~~G~~~~~~~L~V~~p~~ 513 (527)
T 3qs9_E 451 CTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPFP 513 (527)
T ss_dssp CCCCCCCCEEEC---------CEEEEECCCCCSSCSCEEEEEEECSSCEEEEEEEC-------
T ss_pred CccccccccceeccccccCCceEEEEEEEEEEcCCCEEEEEEEEeCCCCceeEEEEecCCCce
Confidence 110 0 001111122333433346799999999999999999999997765433
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=360.09 Aligned_cols=369 Identities=22% Similarity=0.245 Sum_probs=269.1
Q ss_pred CcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCC-ceEEEecCcEEEEEEcccccCCCeEEE
Q psy2166 62 TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS-RFKTTADFGFVTLDLTEVYDRDQGIYT 140 (805)
Q Consensus 62 ~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 140 (805)
+..+|.|...+. ++.+.+|+.++|.|.+.+ +.|.+.|+|+|||..+.... ++.....++ +|.|.+++.+|+|.|+
T Consensus 3 v~~~P~~~~~p~-~~~v~~G~~v~l~C~~~~-~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~--~L~i~~~~~~D~G~Y~ 78 (395)
T 1bih_A 3 VDKYPVLKDQPA-EVLFRENNPTVLECIIEG-NDQGVKYSWKKDGKSYNWQEHNAALRKDEG--SLVFLRPQASDEGHYQ 78 (395)
T ss_dssp --CCCEECCCCS-EEEEETTSCEEECCCEES-CCSSCEEEEEESSSBCCTTTTTEEECTTSC--CEEESSCCGGGCEEEE
T ss_pred cCCCCEeecCCC-ceEEeCCCEEEEEEEEec-CCCCceEEEEECCcCcccccceEEEecCCc--eEEEecCCCCCCcEEE
Confidence 456788776654 789999999999999993 37889999999999988765 333333333 7999999999999999
Q ss_pred EEEEeCCeeEEE-EEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCc
Q psy2166 141 CRAWNLAGETFT-STTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGE 219 (805)
Q Consensus 141 C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~ 219 (805)
|.|.|..|.... ...|.|...+ .|.+ .+.. ..+.+|+
T Consensus 79 C~a~n~~g~~~s~~~~l~v~~~~---------------------------------------~p~~--~~~~-~~~~~G~ 116 (395)
T 1bih_A 79 CFAETPAGVASSRVISFRKTYLI---------------------------------------ASPA--KTHE-KTPIEGR 116 (395)
T ss_dssp EEEEETTEEEECCCEEEEEEEEE---------------------------------------CCCC--EEEE-ECCBTTE
T ss_pred EEEEeCCCeEEeEEEEEEEEEee---------------------------------------cCCc--CCcc-eeeeeCC
Confidence 999999887653 3455554321 1112 1112 2477999
Q ss_pred eEEEEEEEeeCCCCCeEEEEEECC---EEccC----CCcEEEEEEcCeEEEEEcCCCCcccE---EEEEEEEcCCeeEEE
Q psy2166 220 IAHFEASLIPVGDQTMTVEFLYNG---KPIEA----SHRIRTVHAFGMVVLEILGTKIEDTG---VYTCRATNKWGQAEI 289 (805)
Q Consensus 220 ~~~l~C~~~~~~~p~~~i~W~k~g---~~l~~----~~~~~~~~~~~~~~L~i~~~~~~d~G---~Y~C~~~n~~g~~~~ 289 (805)
.+.|.|.+. .+.|.+.+.|++++ .+... ..++... .+ ..|.|.+++.+|+| .|+|.+.|..+....
T Consensus 117 ~v~l~C~~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~~--~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~ 192 (395)
T 1bih_A 117 PFQLDCVLP-NAYPKPLITWKKRLSGADPNADVTDFDRRITAG-PD--GNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEV 192 (395)
T ss_dssp EEEECCCCC-EEESCCEEEEEEEETTSCGGGCCCCCCTTEEEC-TT--SCEEEEEECGGGCCSSEEEEEEEECTTCSSCE
T ss_pred cEEEEecCC-CCCCCCeEEEEecCCCcCcccccccccccEEEc-CC--CcEEEEEEeeccCCCceEEEEEEEecccceEE
Confidence 999999852 46788999999986 22211 2333322 22 26999999999999 999999998887544
Q ss_pred EEEEEEecc---CC-----CCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEE--eC
Q psy2166 290 SVNLECVDK---SK-----GQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVS--DF 359 (805)
Q Consensus 290 ~~~l~v~~~---~~-----~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~--~~ 359 (805)
......... .. ..+|.+ .+.. ..+.+|+.+.|.|.+. +.|.+.+.|+++|..+.......+.. ..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~-~~~~~G~~v~l~C~~~--g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~ 267 (395)
T 1bih_A 193 VLVEYEIKGVTKDNSGYKGEPVPQY--VSKD-MMAKAGDVTMIYCMYG--SNPMGYPNYFKNGKDVNGNPEDRITRHNRT 267 (395)
T ss_dssp EEEEEEECCCBCCSSCCCCCCEEEE--ECCS-EEEETTSCEEEEEEEE--CSSCCCCEEEETTEECCCCTTSSEESCSSS
T ss_pred EeeeEEecccccccccccCCcCcee--cCCc-eEEECCCcEEEEEEec--cCCCCeEEEEECCEEcCCCCceeEEEEecC
Confidence 333222111 00 012222 2222 3388999999999997 88999999999999987543222211 11
Q ss_pred cEEEEEEcccCcCCceEEEEEEEeCceeeEE-EEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCc
Q psy2166 360 GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFT-RATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPK 438 (805)
Q Consensus 360 ~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (805)
....|.|.++..+|+|.|+|.|.|..|.... .+.|.|..
T Consensus 268 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~---------------------------------------- 307 (395)
T 1bih_A 268 SGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS---------------------------------------- 307 (395)
T ss_dssp TTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEE----------------------------------------
T ss_pred CCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEc----------------------------------------
Confidence 2236999999999999999999999998665 77887753
Q ss_pred eeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEE
Q psy2166 439 FITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEA 518 (805)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C 518 (805)
+|.+...+.....+.+|+.++|.|
T Consensus 308 --------------------------------------------------------~P~~~~~~~~~~~~~~g~~~~l~C 331 (395)
T 1bih_A 308 --------------------------------------------------------APKYEQKPEKVIVVKQGQDVTIPC 331 (395)
T ss_dssp --------------------------------------------------------EEEEEECCCSEEEECTTSCEEEEC
T ss_pred --------------------------------------------------------CCccccCCCcceEecCCCeEEEEE
Confidence 455555555434489999999999
Q ss_pred EEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 519 RLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 519 ~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
.+. |.|.|.++|+|+|..+..+ ++.+. ++ .|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 332 ~~~--g~p~p~v~W~~~g~~~~~~-~~~~~--~~--~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 394 (395)
T 1bih_A 332 KVT--GLPAPNVVWSHNAKPLSGG-RATVT--DS--GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394 (395)
T ss_dssp EEE--EESCCCCEEEETTEECCSS-SEEEE--TT--EEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEC--cccCCeeEEEECCEECCCC-ceEEE--CC--EEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence 999 6688899999999999765 55443 23 6999999999999999999999999999998887
|
| >1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=360.64 Aligned_cols=377 Identities=20% Similarity=0.245 Sum_probs=271.6
Q ss_pred CCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEE
Q psy2166 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 280 (805)
Q Consensus 201 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 280 (805)
.||.|...+.+. .+.+|+.++|.|.+.. +.|.+.+.|+|+|..+...... .........|.|.+++.+|+|.|+|.+
T Consensus 5 ~~P~~~~~p~~~-~v~~G~~v~l~C~~~~-~~p~~~v~W~k~g~~~~~~~~~-~~~~~~~~~L~i~~~~~~D~G~Y~C~a 81 (395)
T 1bih_A 5 KYPVLKDQPAEV-LFRENNPTVLECIIEG-NDQGVKYSWKKDGKSYNWQEHN-AALRKDEGSLVFLRPQASDEGHYQCFA 81 (395)
T ss_dssp CCCEECCCCSEE-EEETTSCEEECCCEES-CCSSCEEEEEESSSBCCTTTTT-EEECTTSCCEEESSCCGGGCEEEEEEE
T ss_pred CCCEeecCCCce-EEeCCCEEEEEEEEec-CCCCceEEEEECCcCcccccce-EEEecCCceEEEecCCCCCCcEEEEEE
Confidence 678888887765 4889999999999842 3888999999999988766531 122233457999999999999999999
Q ss_pred EcCCeeEE-EEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECC---EEccC----CCc
Q psy2166 281 TNKWGQAE-ISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNG---KPIFH----KNR 352 (805)
Q Consensus 281 ~n~~g~~~-~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g---~~l~~----~~~ 352 (805)
.|..|... ..+.+.+... ..|.+. +... .+.+|+.+.|.|.+.. +.|.+.+.|++++ .+... ..+
T Consensus 82 ~n~~g~~~s~~~~l~v~~~---~~p~~~--~~~~-~~~~G~~v~l~C~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~ 154 (395)
T 1bih_A 82 ETPAGVASSRVISFRKTYL---IASPAK--THEK-TPIEGRPFQLDCVLPN-AYPKPLITWKKRLSGADPNADVTDFDRR 154 (395)
T ss_dssp EETTEEEECCCEEEEEEEE---ECCCCE--EEEE-CCBTTEEEEECCCCCE-EESCCEEEEEEEETTSCGGGCCCCCCTT
T ss_pred EeCCCeEEeEEEEEEEEEe---ecCCcC--Ccce-eeeeCCcEEEEecCCC-CCCCCeEEEEecCCCcCccccccccccc
Confidence 99888764 2344444332 122222 1222 3779999999999621 7888999999986 22211 233
Q ss_pred eEEEEeCcEEEEEEcccCcCCce---EEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccc
Q psy2166 353 VKMVSDFGFVVMDIAYVQSHDSG---EYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQ 429 (805)
Q Consensus 353 ~~~~~~~~~~~l~i~~v~~~d~G---~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 429 (805)
+....+ + .|.|.++..+|+| .|+|.|.|..|................
T Consensus 155 ~~~~~~-~--~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~--------------------------- 204 (395)
T 1bih_A 155 ITAGPD-G--NLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTK--------------------------- 204 (395)
T ss_dssp EEECTT-S--CEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBC---------------------------
T ss_pred EEEcCC-C--cEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEeccccc---------------------------
Confidence 433322 2 5889999999999 999999999887544333221100000
Q ss_pred cCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCccccc
Q psy2166 430 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLK 509 (805)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~ 509 (805)
.........+|.+ . +....+.
T Consensus 205 --------------------------------------------------------~~~~~~~~~~p~~--~-~~~~~~~ 225 (395)
T 1bih_A 205 --------------------------------------------------------DNSGYKGEPVPQY--V-SKDMMAK 225 (395)
T ss_dssp --------------------------------------------------------CSSCCCCCCEEEE--E-CCSEEEE
T ss_pred --------------------------------------------------------ccccccCCcCcee--c-CCceEEE
Confidence 0000001223444 1 2233488
Q ss_pred CCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEe
Q psy2166 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 510 ~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
+|+.++|.|.+. |.|.+.++|+|+|..+.......+ ...
T Consensus 226 ~G~~v~l~C~~~--g~p~~~i~W~~~g~~~~~~~~~~~---------~~~------------------------------ 264 (395)
T 1bih_A 226 AGDVTMIYCMYG--SNPMGYPNYFKNGKDVNGNPEDRI---------TRH------------------------------ 264 (395)
T ss_dssp TTSCEEEEEEEE--CSSCCCCEEEETTEECCCCTTSSE---------ESC------------------------------
T ss_pred CCCcEEEEEEec--cCCCCeEEEEECCEEcCCCCceeE---------EEE------------------------------
Confidence 999999999998 778889999999987754311100 000
Q ss_pred eeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEE-EEEEEEeeccccc
Q psy2166 590 SKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVT-KASLKCVSKTNLI 668 (805)
Q Consensus 590 ~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~p~~~ 668 (805)
. .. ....|.|.++..+|+|.|+|.|.|..|.... .+.|.|..
T Consensus 265 ---~-------------------~~----------~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~----- 307 (395)
T 1bih_A 265 ---N-------------------RT----------SGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS----- 307 (395)
T ss_dssp ---S-------------------SS----------TTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEE-----
T ss_pred ---e-------------------cC----------CCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEc-----
Confidence 0 00 0013889999999999999999999999766 88999984
Q ss_pred cccccccccCCCCCCCCCCCCCCCeeeecCCc-ccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeC
Q psy2166 669 LESQLPELRRQPAGVPDSEDGRPPQFTSEFQH-LSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF 747 (805)
Q Consensus 669 ~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~-~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~ 747 (805)
+|.|...+.+ . .+.+|+.+.|.|.+. |.|.|.|+|+|+|..+..+ ++.+. +
T Consensus 308 ----------------------~P~~~~~~~~~~-~~~~g~~~~l~C~~~--g~p~p~v~W~~~g~~~~~~-~~~~~--~ 359 (395)
T 1bih_A 308 ----------------------APKYEQKPEKVI-VVKQGQDVTIPCKVT--GLPAPNVVWSHNAKPLSGG-RATVT--D 359 (395)
T ss_dssp ----------------------EEEEEECCCSEE-EECTTSCEEEECEEE--EESCCCCEEEETTEECCSS-SEEEE--T
T ss_pred ----------------------CCccccCCCcce-EecCCCeEEEEEEEC--cccCCeeEEEECCEECCCC-ceEEE--C
Confidence 5677776666 5 899999999999999 9999999999999998765 55543 3
Q ss_pred cEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 748 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 748 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
+ .|.|.++..+|+|.|+|.|.|.+|....++.|.|
T Consensus 360 ~--~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 394 (395)
T 1bih_A 360 S--GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394 (395)
T ss_dssp T--EEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred C--EEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence 4 7999999999999999999999999999999988
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=309.46 Aligned_cols=281 Identities=26% Similarity=0.439 Sum_probs=242.5
Q ss_pred cCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEE
Q psy2166 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 63 ~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
+.+|.|...+. .+.+.+|+.++|.|.+. +.|.+.|+|+|+|..+..+.++.+...++..+|.|.+++.+|+|.|+|.
T Consensus 3 ~~pP~~~~~p~-~~~~~~G~~v~l~C~~~--g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 79 (284)
T 2rik_A 3 MAPPFFDLKPV-SVDLALGESGTFKCHVT--GTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCY 79 (284)
T ss_dssp CCCCEEEECCC-CEEEETTCCEEEEEEEE--SSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred cCCCEEEcccc-ceEecCCCcEEEEEEEE--cCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEE
Confidence 46777776655 78899999999999998 6788899999999999988888888777778999999999999999999
Q ss_pred EEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEE
Q psy2166 143 AWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAH 222 (805)
Q Consensus 143 a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~ 222 (805)
|.|..|.......|.|..+ |.+...+.....+.+|+.+.
T Consensus 80 ~~n~~g~~~~~~~l~V~~~-----------------------------------------p~~~~~~~~~~~v~~g~~~~ 118 (284)
T 2rik_A 80 ASNVAGKDSCSAQLGVQEP-----------------------------------------PRFIKKLEPSRIVKQDEHTR 118 (284)
T ss_dssp EEETTEEEEEEEEEEEECC-----------------------------------------CEEEECCCSEEEEETTCCEE
T ss_pred EEECCceEEEEEEEEccCC-----------------------------------------CcccccCCCceEecCCceEE
Confidence 9999998888888888653 33333333333478999999
Q ss_pred EEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEeccCCCC
Q psy2166 223 FEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQ 302 (805)
Q Consensus 223 l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~ 302 (805)
|.|.+ .+.|.+.+.|+++|..+....++......+...|.|.+++.+|+|.|+|.+.|..|.....+.|.|. .
T Consensus 119 l~C~~--~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~-----~ 191 (284)
T 2rik_A 119 YECKI--GGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVK-----E 191 (284)
T ss_dssp EEEEE--ESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEE-----C
T ss_pred EEEEE--eeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEe-----c
Confidence 99998 5788999999999999988887777777778899999999999999999999999998888888887 4
Q ss_pred CCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCcEEEEEEcccCcCCceEEEEEEE
Q psy2166 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAW 382 (805)
Q Consensus 303 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~ 382 (805)
+|.+...+.... +.+|+.++|.|.+. +.|.+.+.|+++|..+....++.+..++....|.|.++..+|+|.|+|.|.
T Consensus 192 ~p~~~~~~~~~~-~~~g~~v~l~C~~~--g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 268 (284)
T 2rik_A 192 PPVFRKKPHPVE-TLKGADVHLECELQ--GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKAS 268 (284)
T ss_dssp CCBCCSCCCCEE-ECTTCCEEEEEECB--SSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred CCcceeCCCcce-ecCCCeEEEEEEEE--ecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEE
Confidence 566655554443 78999999999997 889999999999999998888888888777889999999999999999999
Q ss_pred eCceeeEEEEEEEEE
Q psy2166 383 NKYGEDFTRATIKCF 397 (805)
Q Consensus 383 n~~g~~~~~~~l~V~ 397 (805)
|..|.....+.|.|.
T Consensus 269 N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 269 NDVGSYTCVGSITLK 283 (284)
T ss_dssp ETTEEEEEEEEEEEC
T ss_pred eCCCceeEEEEEEEc
Confidence 999999999988874
|
| >2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-36 Score=308.26 Aligned_cols=280 Identities=24% Similarity=0.469 Sum_probs=242.6
Q ss_pred CCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEE
Q psy2166 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 280 (805)
Q Consensus 201 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 280 (805)
.||.|...+.+. .+.+|+.++|.|.+ .+.|.+.+.|+|+|..+....++......+...|.|.+++.+|+|.|+|.+
T Consensus 4 ~pP~~~~~p~~~-~~~~G~~v~l~C~~--~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~ 80 (284)
T 2rik_A 4 APPFFDLKPVSV-DLALGESGTFKCHV--TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYA 80 (284)
T ss_dssp CCCEEEECCCCE-EEETTCCEEEEEEE--ESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCEEEccccce-EecCCCcEEEEEEE--EcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEE
Confidence 678888887765 48899999999998 577889999999999998888887776777789999999999999999999
Q ss_pred EcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCc
Q psy2166 281 TNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG 360 (805)
Q Consensus 281 ~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~ 360 (805)
.|..|..+..+.|.|. .+|.+...+.....+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+.....
T Consensus 81 ~n~~g~~~~~~~l~V~-----~~p~~~~~~~~~~~v~~g~~~~l~C~~~--g~p~~~v~W~~~~~~~~~~~~~~~~~~~~ 153 (284)
T 2rik_A 81 SNVAGKDSCSAQLGVQ-----EPPRFIKKLEPSRIVKQDEHTRYECKIG--GSPEIKVLWYKDETEIQESSKFRMSFVES 153 (284)
T ss_dssp EETTEEEEEEEEEEEE-----CCCEEEECCCSEEEEETTCCEEEEEEEE--SSSCCEEEEEETTEECCCSSSEEEEEETT
T ss_pred EECCceEEEEEEEEcc-----CCCcccccCCCceEecCCceEEEEEEEe--eeCCCEEEEEECCEECcCCCcEEEEEcCC
Confidence 9999998888888887 5667666555544588999999999998 78999999999999998887777776677
Q ss_pred EEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCcee
Q psy2166 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFI 440 (805)
Q Consensus 361 ~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (805)
...|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus 154 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~------------------------------------------ 191 (284)
T 2rik_A 154 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE------------------------------------------ 191 (284)
T ss_dssp EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC------------------------------------------
T ss_pred EEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEec------------------------------------------
Confidence 78899999999999999999999999888888888753
Q ss_pred eeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEE
Q psy2166 441 TQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARL 520 (805)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v 520 (805)
+|.+...+... .+.+|+.++|.|.+
T Consensus 192 ------------------------------------------------------~p~~~~~~~~~-~~~~g~~v~l~C~~ 216 (284)
T 2rik_A 192 ------------------------------------------------------PPVFRKKPHPV-ETLKGADVHLECEL 216 (284)
T ss_dssp ------------------------------------------------------CCBCCSCCCCE-EECTTCCEEEEEEC
T ss_pred ------------------------------------------------------CCcceeCCCcc-eecCCCeEEEEEEE
Confidence 33343333333 37899999999999
Q ss_pred eeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEe
Q psy2166 521 TPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 521 ~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
. |.|.+.++|+++|..+..+.++.+..++....|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus 217 ~--g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 283 (284)
T 2rik_A 217 Q--GTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK 283 (284)
T ss_dssp B--SSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred E--ecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence 8 778899999999999998888888888888899999999999999999999999999999999885
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-38 Score=335.92 Aligned_cols=318 Identities=11% Similarity=0.151 Sum_probs=239.9
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecC--------------CCCceEEEe---cCcEEEEEEcccccCCCe
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLE--------------LGSRFKTTA---DFGFVTLDLTEVYDRDQG 137 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~--------------~~~~~~~~~---~~~~~~L~I~~~~~~D~G 137 (805)
.+.+.+|+.++|.|.+. +.|.+.|.|+|++..+. ...|+.+.. +++..+|.|.+++.+|+|
T Consensus 3 ~v~~~~G~~v~L~C~~~--~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G 80 (363)
T 1wio_A 3 VVLGKKGDTVELTCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSD 80 (363)
T ss_dssp EEEEETTSCEEECCCCT--TCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCE
T ss_pred eEEEeCCCeEEEEEEec--CCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCE
Confidence 35788999999999988 68899999999986421 123554443 334557999999999999
Q ss_pred EEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCC
Q psy2166 138 IYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 217 (805)
Q Consensus 138 ~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~ 217 (805)
.|+|.|.|..+ ...|.|.... .+|. ..+.+
T Consensus 81 ~Y~C~~~n~~~----~~~l~V~~~~--------------------------------------~~~~--------~~v~~ 110 (363)
T 1wio_A 81 TYICEVEDQKE----EVQLLVFGLT--------------------------------------ANSD--------THLLQ 110 (363)
T ss_dssp EEEEEETTEEE----EEEEEEEEEE--------------------------------------ESSC--------SSEES
T ss_pred EEEEEEEECCC----cEEEEEEeCC--------------------------------------CCCc--------eEEec
Confidence 99999987633 4556554210 0010 13679
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEec
Q psy2166 218 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD 297 (805)
Q Consensus 218 g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~ 297 (805)
|+.++|.|.+ .+.|.+.+.|+++|..+. . ....|.|.+++.+|+|.|+|.|.|..+.....+.+.|..
T Consensus 111 G~~v~l~C~~--~~~p~~~v~W~~~~~~~~--------~--~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~ 178 (363)
T 1wio_A 111 GQSLTLTLES--PPGSSPSVQCRSPRGKNI--------Q--GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA 178 (363)
T ss_dssp BSCEEEEEEC--CTTCCCCEEEECSSSCEE--------E--ESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEEC
T ss_pred CCCEEEEEEc--CCCCCCeEEEEcCCCccc--------c--cceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEec
Confidence 9999999988 678899999999976431 1 224799999999999999999999888777777777763
Q ss_pred cCCCCCCeEEecCCCcccccCCCeEEEEEEEeec--C-CCCcEEEEEECCEEccC--------CCceEEEE---------
Q psy2166 298 KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPV--N-DPELKVEWFHNGKPIFH--------KNRVKMVS--------- 357 (805)
Q Consensus 298 ~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~--~-~p~~~v~W~~~g~~l~~--------~~~~~~~~--------- 357 (805)
. |... ....+.+|+.+.|.|.+.+. + .|.+.+.|+++|..+.. ..++.+..
T Consensus 179 ~-----p~~~----~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (363)
T 1wio_A 179 F-----QKAS----SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQM 249 (363)
T ss_dssp C-----SCSE----EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBC
T ss_pred C-----CCCC----CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhc
Confidence 2 2211 22237789999999988621 1 77899999999988865 44444432
Q ss_pred -eCcEEEEEEcccCcCCceEEEEEEEeC--ceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCccc
Q psy2166 358 -DFGFVVMDIAYVQSHDSGEYVCRAWNK--YGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVA 434 (805)
Q Consensus 358 -~~~~~~l~i~~v~~~d~G~Y~C~a~n~--~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (805)
..+...|.|.++..+|+|.|+|.|.|. .|.....+.|.|..
T Consensus 250 ~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~------------------------------------ 293 (363)
T 1wio_A 250 GKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR------------------------------------ 293 (363)
T ss_dssp CSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEE------------------------------------
T ss_pred ccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEE------------------------------------
Confidence 222447999999999999999999999 99888888887631
Q ss_pred CCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeE
Q psy2166 435 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSA 514 (805)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v 514 (805)
..|+++
T Consensus 294 --------------------------------------------------------------------------v~g~~~ 299 (363)
T 1wio_A 294 --------------------------------------------------------------------------ATQLQK 299 (363)
T ss_dssp --------------------------------------------------------------------------ECCCSS
T ss_pred --------------------------------------------------------------------------ecCCCe
Confidence 128889
Q ss_pred EEEEEEeeCCCCCcE--EEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEe
Q psy2166 515 HFEARLTPVTDPDLV--VEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 515 ~L~C~v~~~g~p~~~--v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
+|.|.+. +.|.|. ++|+|+|+.+..+ ..|.|.++..+|+|.|+|.|.|. |....++.|.|.
T Consensus 300 ~l~C~~~--g~p~p~~~i~W~~~~~~~~~~-----------~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V~ 362 (363)
T 1wio_A 300 NLTCEVW--GPTSPKLMLSLKLENKEAKVS-----------KREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKVL 362 (363)
T ss_dssp SEEEEEE--SSCCTTCCEEEECSSSSCSEE-----------ESSSEEEESSCCSEEEEEEECSS-SSCCEEEEEEEC
T ss_pred eEEEEEc--cccCCCccEEEEeCCCceeee-----------eeeeeeeeccccceeEEEEEecC-CeEEEecceEec
Confidence 9999999 566666 9999999877532 13778889999999999999965 777777777764
|
| >1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-37 Score=336.93 Aligned_cols=369 Identities=13% Similarity=0.104 Sum_probs=252.4
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCC----ceEEEEECC--Eec------------CCCCceEEEecCcEEEEEEccccc
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPN----LKIEWIFNG--KPL------------ELGSRFKTTADFGFVTLDLTEVYD 133 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~----~~v~W~k~g--~~i------------~~~~~~~~~~~~~~~~L~I~~~~~ 133 (805)
.+..+.+.+|+.++|.|.+. +.+. +.|.|+|++ ..+ ....|+.+..+++..+|.|.+++.
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~--~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 84 (438)
T 1qgc_4 7 SPASLAVSLGQRATISCRAS--ESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVEA 84 (438)
T ss_dssp ECSEEEECTTSCEEEEEEES--SCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCCG
T ss_pred cCCeEEeeCCCCEEEEEecC--CCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCcC
Confidence 34478899999999999987 4554 489999963 322 124588887777788999999999
Q ss_pred CCCeEEEEEEEeCCeeE-EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccc
Q psy2166 134 RDQGIYTCRAWNLAGET-FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHL 212 (805)
Q Consensus 134 ~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 212 (805)
+|+|.|+|.|.|..+.. .....|.|.... .+|.+.......
T Consensus 85 ~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~--------------------------------------~~P~v~~~~~~~ 126 (438)
T 1qgc_4 85 DDVATYYCQQSNEVPLTFGAGTKLDLKRAD--------------------------------------AAPTVSIFPPSS 126 (438)
T ss_dssp GGCEEEEEEECSSTTCCBCCCEEEEECCCC--------------------------------------BCCEEEEECCCH
T ss_pred cCCeeEEEEEecCCCccccCceeEEecCCC--------------------------------------CCCEEEecCCCh
Confidence 99999999999986533 234556663211 245555433322
Q ss_pred cccCCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCCCcEEE-EE--EcC----eEEEEEcCCCCcccEEEEEEEEcCC
Q psy2166 213 SNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRIRT-VH--AFG----MVVLEILGTKIEDTGVYTCRATNKW 284 (805)
Q Consensus 213 ~~v~~g~~~~l~C~~~~~~~p~~-~i~W~k~g~~l~~~~~~~~-~~--~~~----~~~L~i~~~~~~d~G~Y~C~~~n~~ 284 (805)
. ..+|+.++|.|.+.. +.|.+ +|.|+|+|..+........ .. .++ ...|.|.+++.+|+|.|+|.|.|..
T Consensus 127 ~-~~~g~~~~l~C~~~g-~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 204 (438)
T 1qgc_4 127 E-QLTSGGASVVCFLNN-FYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKT 204 (438)
T ss_dssp H-HHHTTEEEEEEEEEE-EBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETT
T ss_pred h-hccCCceEEEEEEcc-ccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecc
Confidence 2 346889999999842 35665 9999999998876521111 10 111 3579999999999999999999988
Q ss_pred eeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCC--CcEEEEEEC--CEEcc------------
Q psy2166 285 GQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDP--ELKVEWFHN--GKPIF------------ 348 (805)
Q Consensus 285 g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p--~~~v~W~~~--g~~l~------------ 348 (805)
+.......+... .++.....+... .+.+|+.++|.|.+. +.| .+.+.|+|+ ++.+.
T Consensus 205 ~~~~~~~~~~~~-----~~~~~~~~~~~~-~v~~G~~v~L~C~~~--g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~ 276 (438)
T 1qgc_4 205 STSPIVKSFNRN-----ECEVMLVESGGG-LVKPGGSLKLSCTAS--GFIFNRCAMSWVRQTPEKRLEWVATISSGGTYT 276 (438)
T ss_dssp CSSCEEEEEETT-----C-CCEEEEECCE-EECTTCCEEEEEEEE--SSCGGGSCEEEEEEETTTEEEEEEEECTTSCCE
T ss_pred cCCceecccccc-----cceeEEecCCce-EEecCCcEEEEEEEc--ccccCCcEEEEEECCCCCCcEEEEEEeecCCce
Confidence 775433333321 122222223333 388999999999998 666 679999996 54331
Q ss_pred -----CCCceEEEEe--CcEEEEEEcccCcCCceEEEEEEEeCce-----eeEEEEEEEEEecccccccCCChhHHHHHH
Q psy2166 349 -----HKNRVKMVSD--FGFVVMDIAYVQSHDSGEYVCRAWNKYG-----EDFTRATIKCFGKGGVYLDSLQPESLARIR 416 (805)
Q Consensus 349 -----~~~~~~~~~~--~~~~~l~i~~v~~~d~G~Y~C~a~n~~g-----~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~ 416 (805)
...++.+..+ .....|.|.++..+|+|.|+|.|.|..+ .......+.|...
T Consensus 277 ~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~----------------- 339 (438)
T 1qgc_4 277 YYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAA----------------- 339 (438)
T ss_dssp ECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSS-----------------
T ss_pred ecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecC-----------------
Confidence 1346666554 3466899999999999999999998443 1112345554311
Q ss_pred HhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCC
Q psy2166 417 ELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAP 496 (805)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P 496 (805)
...+|
T Consensus 340 ---------------------------------------------------------------------------~~~~P 344 (438)
T 1qgc_4 340 ---------------------------------------------------------------------------KTTPP 344 (438)
T ss_dssp ---------------------------------------------------------------------------CCBCC
T ss_pred ---------------------------------------------------------------------------CCCCC
Confidence 12456
Q ss_pred ceEecCCCcccccCCCeEEEEEEEeeCCC-CCc-EEEEEECCEEccCCCceEEEeeCC---EEEEEEccCCCCCCEEEEE
Q psy2166 497 KFITQISDVTQLKEGQSAHFEARLTPVTD-PDL-VVEWFYNGKKLPHGHRYRTFHDFG---IVILDILYCYEENSGVYEC 571 (805)
Q Consensus 497 ~~~~~~~~~~~v~~G~~v~L~C~v~~~g~-p~~-~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C 571 (805)
.+....+... +.+|+.++|.|.+. |. |.+ .|+|+++|..+.......+..++. .+.|.|.++..+| |.|+|
T Consensus 345 ~v~~~~~~~~-~~~g~~v~L~C~~~--g~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C 420 (438)
T 1qgc_4 345 SVYPLAPGSA-AAAASMVTLGCLVK--GYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTC 420 (438)
T ss_dssp EEEEECCCGG-GCCSSEEEEEEEEE--SCBSSCCEEEEGGGTCCSSEEECCCEEETTEEEEEEEEEEEEEHHHH-SCCEE
T ss_pred eEEEcCcccc-cccCCcEEEEEEec--cccCCCcEEEEecCCCCCceeecCccccCCcEEEEEEEEEehhhcCC-ceEEE
Confidence 5555444433 77899999999999 54 766 999999998875321111122222 2359999888889 99999
Q ss_pred EEEcCCcceEEEEEE
Q psy2166 572 RATNKYGSDVTKASL 586 (805)
Q Consensus 572 ~a~n~~g~~~~~~~l 586 (805)
.|.|..|.......|
T Consensus 421 ~a~n~~g~~~~~~~i 435 (438)
T 1qgc_4 421 NVAHPASSTKVDKKI 435 (438)
T ss_dssp EEEEGGGTEEEEEEC
T ss_pred EEEeCCCCcceeeec
Confidence 999999987766554
|
| >1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=330.82 Aligned_cols=370 Identities=13% Similarity=0.136 Sum_probs=245.8
Q ss_pred ccCCCceEEEEEEEeeCCCCC----eEEEEEECC--EEc------------cCCCcEEEEEEcCeEEEEEcCCCCcccEE
Q psy2166 214 NLSEGEIAHFEASLIPVGDQT----MTVEFLYNG--KPI------------EASHRIRTVHAFGMVVLEILGTKIEDTGV 275 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~p~----~~i~W~k~g--~~l------------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 275 (805)
.+.+|+.++|.|.+ .+.+. +.+.|||++ ..+ ....++......+...|.|.+++.+|+|.
T Consensus 12 ~v~~G~~v~L~C~~--~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 89 (438)
T 1qgc_4 12 AVSLGQRATISCRA--SESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVEADDVAT 89 (438)
T ss_dssp EECTTSCEEEEEEE--SSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred EeeCCCCEEEEEec--CCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCcCcCCee
Confidence 47899999999997 66665 489999963 322 12346665556667899999999999999
Q ss_pred EEEEEEcCCeeE-EEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCc-EEEEEECCEEccCCCce
Q psy2166 276 YTCRATNKWGQA-EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPEL-KVEWFHNGKPIFHKNRV 353 (805)
Q Consensus 276 Y~C~~~n~~g~~-~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~ 353 (805)
|+|.|.|..+.. ...+.+.|... ..+|.+........ ..+|+.++|.|.+.+ +.|.+ .|.|+|+|..+......
T Consensus 90 Y~C~a~n~~~~~~~~~~~l~V~~~--~~~P~v~~~~~~~~-~~~g~~~~l~C~~~g-~~p~~~~v~W~k~g~~~~~~~~~ 165 (438)
T 1qgc_4 90 YYCQQSNEVPLTFGAGTKLDLKRA--DAAPTVSIFPPSSE-QLTSGGASVVCFLNN-FYPKDINVKWKIDGSERQNGVLN 165 (438)
T ss_dssp EEEEECSSTTCCBCCCEEEEECCC--CBCCEEEEECCCHH-HHHTTEEEEEEEEEE-EBSSCEEEEEEETTEEECTTEEE
T ss_pred EEEEEecCCCccccCceeEEecCC--CCCCEEEecCCChh-hccCCceEEEEEEcc-ccCCCcEEEEEECCEEcCCCcee
Confidence 999999987532 33345555322 13666665444433 446889999999984 36766 99999999988654111
Q ss_pred --EEEE-eCc----EEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCC
Q psy2166 354 --KMVS-DFG----FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQP 426 (805)
Q Consensus 354 --~~~~-~~~----~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 426 (805)
.... .++ ...|.|.++..+|+|.|+|.|.|..+.......+.+
T Consensus 166 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~------------------------------ 215 (438)
T 1qgc_4 166 SWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNR------------------------------ 215 (438)
T ss_dssp EEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEET------------------------------
T ss_pred ccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceeccccc------------------------------
Confidence 1100 011 246999999999999999999998876532222210
Q ss_pred ccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcc
Q psy2166 427 VAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVT 506 (805)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 506 (805)
..++.+...+...
T Consensus 216 ------------------------------------------------------------------~~~~~~~~~~~~~- 228 (438)
T 1qgc_4 216 ------------------------------------------------------------------NECEVMLVESGGG- 228 (438)
T ss_dssp ------------------------------------------------------------------TC-CCEEEEECCE-
T ss_pred ------------------------------------------------------------------ccceeEEecCCce-
Confidence 0111112222232
Q ss_pred cccCCCeEEEEEEEeeCCCC--CcEEEEEEC--CEEcc-----------------CCCceEEEee--CCEEEEEEccCCC
Q psy2166 507 QLKEGQSAHFEARLTPVTDP--DLVVEWFYN--GKKLP-----------------HGHRYRTFHD--FGIVILDILYCYE 563 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~p--~~~v~W~~~--g~~l~-----------------~~~~~~~~~~--~~~~~L~i~~v~~ 563 (805)
.+.+|+.++|.|.+. |.| .+.++|+|+ |+.+. ...++.+..+ .+...|.|.+++.
T Consensus 229 ~v~~G~~v~L~C~~~--g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 306 (438)
T 1qgc_4 229 LVKPGGSLKLSCTAS--GFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRS 306 (438)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred EEecCCcEEEEEEEc--ccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCCh
Confidence 388999999999999 555 679999996 54332 1346665543 3466799999999
Q ss_pred CCCEEEEEEEEcCCcceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEE
Q psy2166 564 ENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYE 643 (805)
Q Consensus 564 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 643 (805)
+|+|.|+|.|.|..|.... .. .
T Consensus 307 ~D~G~Y~C~a~n~~~~~~~---------~~--------------------~----------------------------- 328 (438)
T 1qgc_4 307 ADTAMYYCVRREDGGDEGF---------AY--------------------W----------------------------- 328 (438)
T ss_dssp GGCCEEEEEECCSSSCCCC---------CS--------------------B-----------------------------
T ss_pred hhCEEEEEEEEccCCCccc---------ee--------------------e-----------------------------
Confidence 9999999999885442000 00 0
Q ss_pred EEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCC-C
Q psy2166 644 CRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGD-Q 722 (805)
Q Consensus 644 C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~-p 722 (805)
| ....|.|...+ ..+|.+...+... .+.+|+.++|.|.+. |. |
T Consensus 329 -------~---~~~~l~V~~~~-----------------------~~~P~v~~~~~~~-~~~~g~~v~L~C~~~--g~~P 372 (438)
T 1qgc_4 329 -------G---QGTVVTVSAAK-----------------------TTPPSVYPLAPGS-AAAAASMVTLGCLVK--GYFP 372 (438)
T ss_dssp -------C---CCEEEEECSSC-----------------------CBCCEEEEECCCG-GGCCSSEEEEEEEEE--SCBS
T ss_pred -------C---CCEEEEEecCC-----------------------CCCCeEEEcCccc-ccccCCcEEEEEEec--cccC
Confidence 0 00111221100 0345554444444 678899999999999 87 8
Q ss_pred Ce-EEEEEECCEEccCCCCeEEEeeCc---EEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEE
Q psy2166 723 TM-TVEFLYNGKPIEASHRIRTVHAFG---MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783 (805)
Q Consensus 723 ~~-~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 783 (805)
.| .|+|+|+|..+.......+..++. ...|.|.++..+| |.|+|.|.|.+|......+|.
T Consensus 373 ~~~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i~ 436 (438)
T 1qgc_4 373 EPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV 436 (438)
T ss_dssp SCCEEEEGGGTCCSSEEECCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEECC
T ss_pred CCcEEEEecCCCCCceeecCccccCCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeecC
Confidence 87 999999998876431111222221 1359999999889 999999999999887766554
|
| >1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-36 Score=322.12 Aligned_cols=334 Identities=14% Similarity=0.157 Sum_probs=226.9
Q ss_pred ccCCCceEEEEEEEeeCCCCCeEEEEEECCEEcc--------------CCCcEEEEE---EcCeEEEEEcCCCCcccEEE
Q psy2166 214 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIE--------------ASHRIRTVH---AFGMVVLEILGTKIEDTGVY 276 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~--------------~~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y 276 (805)
.+.+|+.++|.|.+ .+.|.+.+.|+|++..+. ...++.... ..+...|.|.+++.+|+|.|
T Consensus 5 ~~~~G~~v~L~C~~--~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 82 (363)
T 1wio_A 5 LGKKGDTVELTCTA--SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 82 (363)
T ss_dssp EEETTSCEEECCCC--TTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEE
T ss_pred EEeCCCeEEEEEEe--cCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEE
Confidence 47799999999987 688999999999985421 112222211 22456799999999999999
Q ss_pred EEEEEcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEE
Q psy2166 277 TCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV 356 (805)
Q Consensus 277 ~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~ 356 (805)
+|.+.|..+ .+.|.|.. +...+. ..+.+|+.++|.|.+. +.|.+.+.|+++|..+.
T Consensus 83 ~C~~~n~~~----~~~l~V~~--------~~~~~~--~~v~~G~~v~l~C~~~--~~p~~~v~W~~~~~~~~-------- 138 (363)
T 1wio_A 83 ICEVEDQKE----EVQLLVFG--------LTANSD--THLLQGQSLTLTLESP--PGSSPSVQCRSPRGKNI-------- 138 (363)
T ss_dssp EEEETTEEE----EEEEEEEE--------EEESSC--SSEESBSCEEEEEECC--TTCCCCEEEECSSSCEE--------
T ss_pred EEEEEECCC----cEEEEEEe--------CCCCCc--eEEecCCCEEEEEEcC--CCCCCeEEEEcCCCccc--------
Confidence 999988743 45555542 112222 2378999999999997 78899999999875431
Q ss_pred EeCcEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCC
Q psy2166 357 SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEA 436 (805)
Q Consensus 357 ~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (805)
.... .|.|.++..+|+|.|+|.|.|..+.....+.+.|...
T Consensus 139 ~~~~--~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~------------------------------------- 179 (363)
T 1wio_A 139 QGGK--TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAF------------------------------------- 179 (363)
T ss_dssp EESS--EEEECSBCGGGCEECEEEEEETTEEEEECCEECEECC-------------------------------------
T ss_pred ccce--EEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecC-------------------------------------
Confidence 1222 6999999999999999999998777666666665421
Q ss_pred CceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEE
Q psy2166 437 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHF 516 (805)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L 516 (805)
|... ....+.+|+.++|
T Consensus 180 -----------------------------------------------------------p~~~----~~~~~~~G~~v~l 196 (363)
T 1wio_A 180 -----------------------------------------------------------QKAS----SIVYKKEGEQVEF 196 (363)
T ss_dssp -----------------------------------------------------------SCSE----EEEEEETBCCEEE
T ss_pred -----------------------------------------------------------CCCC----CceEEecCCEEEE
Confidence 1111 2223789999999
Q ss_pred EEEEeeC--C-CCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeeeee
Q psy2166 517 EARLTPV--T-DPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTN 593 (805)
Q Consensus 517 ~C~v~~~--g-~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~ 593 (805)
.|.+.+. + .|.|.++|+++|..+... .+.. .+. .+.|......... .+.......
T Consensus 197 ~C~~~~~~~~~~P~p~i~W~~~g~~~~~~-~~~~---------~~~------~~~~~~~~~~~~~------~~~~~~~~~ 254 (363)
T 1wio_A 197 SFPLAFTVEKLTGSGELWWQAERASSSKS-WITF---------DLK------NKEVSVKRVTQDP------KLQMGKKLP 254 (363)
T ss_dssp ECCCCCCCCSSCEEEEEEEEESSCCCCCC-EEEE---------EEC------SSCEEEEEEECSS------CCBCCSSSS
T ss_pred EEEEecccccCCCceeEEEecCCCCccce-EEEE---------Eec------CCeeeccccccch------hhhcccCCc
Confidence 9988731 1 688999999999887652 0000 000 0111111000000 000001010
Q ss_pred eeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeC--CcceEEEEEEEEeecccccccc
Q psy2166 594 LILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNK--YGSDVTKASLKCVSKTNLILES 671 (805)
Q Consensus 594 ~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~--~g~~~~~~~l~V~~~p~~~~~~ 671 (805)
. .|.|.++..+|+|.|+|.|.|. .|.....+.|.|..
T Consensus 255 ~---------------------------------~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~-------- 293 (363)
T 1wio_A 255 L---------------------------------HLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR-------- 293 (363)
T ss_dssp C---------------------------------EEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEE--------
T ss_pred e---------------------------------EEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEE--------
Confidence 0 0566677777777777777777 77766677766652
Q ss_pred ccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeE--EEEEECCEEccCCCCeEEEeeCcE
Q psy2166 672 QLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMT--VEFLYNGKPIEASHRIRTVHAFGM 749 (805)
Q Consensus 672 ~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~--v~W~~~g~~l~~~~~~~~~~~~~~ 749 (805)
+ .|+.+.|.|.+. |.|+|. |+|+|+|+.+..+.
T Consensus 294 --------------------------------v-~g~~~~l~C~~~--g~p~p~~~i~W~~~~~~~~~~~---------- 328 (363)
T 1wio_A 294 --------------------------------A-TQLQKNLTCEVW--GPTSPKLMLSLKLENKEAKVSK---------- 328 (363)
T ss_dssp --------------------------------E-CCCSSSEEEEEE--SSCCTTCCEEEECSSSSCSEEE----------
T ss_pred --------------------------------e-cCCCeeEEEEEc--cccCCCccEEEEeCCCceeeee----------
Confidence 1 177899999999 888888 99999998776421
Q ss_pred EEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 750 VVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 750 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
.|.|.++..+|+|.|+|.|.|. |....++.|.|.
T Consensus 329 -~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V~ 362 (363)
T 1wio_A 329 -REKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKVL 362 (363)
T ss_dssp -SSSEEEESSCCSEEEEEEECSS-SSCCEEEEEEEC
T ss_pred -eeeeeeeccccceeEEEEEecC-CeEEEecceEec
Confidence 4778899999999999999964 677777777773
|
| >1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=314.78 Aligned_cols=372 Identities=15% Similarity=0.122 Sum_probs=239.8
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEecC-----------------CCCceEEEec--CcEEEEEEccc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPLE-----------------LGSRFKTTAD--FGFVTLDLTEV 131 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i~-----------------~~~~~~~~~~--~~~~~L~I~~~ 131 (805)
+..+.+.+|+.++|.|.+.+...+.+.|.|+|+ +..+. ..+|+.+..+ ++..+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (444)
T 1igt_B 7 SGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRL 86 (444)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCC
Confidence 346789999999999999842113578999985 33210 2357777654 35679999999
Q ss_pred ccCCCeEEEEEEEeCCeeE---EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecc
Q psy2166 132 YDRDQGIYTCRAWNLAGET---FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSE 208 (805)
Q Consensus 132 ~~~D~G~Y~C~a~n~~g~~---~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 208 (805)
+.+|+|.|+|.+.|..+.. .....|.|.... ..+|.+...
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~-------------------------------------~~~P~i~~~ 129 (444)
T 1igt_B 87 KSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAK-------------------------------------TTAPSVYPL 129 (444)
T ss_dssp CGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCC-------------------------------------CBCCEEEEE
T ss_pred CHHHCEEEEEEEecCCcccccccCcEEEEecCCC-------------------------------------CCCCceeEe
Confidence 9999999999999875431 223456664311 023443322
Q ss_pred cccccccCCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCC--CcEEEE-EEcCeEEEEEcCCCCcccEEEEEEEEcCC
Q psy2166 209 FQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEAS--HRIRTV-HAFGMVVLEILGTKIEDTGVYTCRATNKW 284 (805)
Q Consensus 209 ~~~~~~v~~g~~~~l~C~~~~~~~p~~-~i~W~k~g~~l~~~--~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 284 (805)
.+.. .+.+|+.++|.|.+.. ..|.+ .|.|++++..+... ...... .......|.|.++..+| |.|+|.|.|..
T Consensus 130 ~~~~-~~~~g~~v~L~C~~~g-~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~ 206 (444)
T 1igt_B 130 APVC-GDTTGSSVTLGCLVKG-YFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPA 206 (444)
T ss_dssp CCCS-SCCCSSCEEEEEEEEE-EBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETT
T ss_pred cccc-cCCCCCcEEEEEEEcc-eeCCCcEEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCC
Confidence 2222 2579999999999842 24665 99999998764211 110000 00012469999999999 99999999998
Q ss_pred eeEEEEEEEEEec-------------cCCCCCCeEEecCCCccc-ccCCCeEEEEEEEeecC--CCCcEEEEEECCEEcc
Q psy2166 285 GQAEISVNLECVD-------------KSKGQPPKFTSHIKSLEG-LKDGDSAHFECTLTPVN--DPELKVEWFHNGKPIF 348 (805)
Q Consensus 285 g~~~~~~~l~v~~-------------~~~~~~p~~~~~~~~~~~-~~~g~~~~l~C~~~~~~--~p~~~v~W~~~g~~l~ 348 (805)
+.......+.+.+ .....+|.+...+..... +.+|+.++|.|.+.+.. .+.+.|.|+|+|..+.
T Consensus 207 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~ 286 (444)
T 1igt_B 207 SSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVH 286 (444)
T ss_dssp TTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECS
T ss_pred CCcceEEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCcccc
Confidence 8765555443310 011124555333333332 57899999999998421 2357999999999886
Q ss_pred CCCce--EEEEeC---cEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccC
Q psy2166 349 HKNRV--KMVSDF---GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQG 423 (805)
Q Consensus 349 ~~~~~--~~~~~~---~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~ 423 (805)
..... ....++ ....|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~--------------------------- 339 (444)
T 1igt_B 287 TAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISK--------------------------- 339 (444)
T ss_dssp STTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEEC---------------------------
T ss_pred CcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEec---------------------------
Confidence 43221 111111 2346999999999999999999999886633333321
Q ss_pred CCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCC
Q psy2166 424 QQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQIS 503 (805)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~ 503 (805)
...+..+|.+....+
T Consensus 340 -----------------------------------------------------------------~~~~~~~P~v~~~~~ 354 (444)
T 1igt_B 340 -----------------------------------------------------------------PKGSVRAPQVYVLPP 354 (444)
T ss_dssp -----------------------------------------------------------------CCCCCBCCEEEEECC
T ss_pred -----------------------------------------------------------------cCCCCCCCEEEEeCC
Confidence 011246777776555
Q ss_pred CcccccCCCeEEEEEEEeeCCCCCc-EEEEEECCEEccCCCce--EEEeeCC---EEEEEEccCCCCCCEEEEEEEEcCC
Q psy2166 504 DVTQLKEGQSAHFEARLTPVTDPDL-VVEWFYNGKKLPHGHRY--RTFHDFG---IVILDILYCYEENSGVYECRATNKY 577 (805)
Q Consensus 504 ~~~~v~~G~~v~L~C~v~~~g~p~~-~v~W~~~g~~l~~~~~~--~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~ 577 (805)
....+..|+ ++|.|.+.+. .|.+ .|+|+|||..+...... ....++. .+.|.|.....+|+|.|+|.|.|..
T Consensus 355 ~~~~~~~~~-~~L~C~~~g~-~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~ 432 (444)
T 1igt_B 355 PEEEMTKKQ-VTLTCMVTDF-MPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG 432 (444)
T ss_dssp CGGGTTSSE-EEEEEEEEEE-BSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred ChHHccCCe-EEEEEEEEee-eCCCCEEEEEECCEEccccccccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCC
Confidence 443355555 9999999952 4544 99999999998432111 1112222 2357777766778999999999975
Q ss_pred c
Q psy2166 578 G 578 (805)
Q Consensus 578 g 578 (805)
-
T Consensus 433 l 433 (444)
T 1igt_B 433 L 433 (444)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-34 Score=300.05 Aligned_cols=279 Identities=16% Similarity=0.215 Sum_probs=218.0
Q ss_pred CCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEE
Q psy2166 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYEC 571 (805)
Q Consensus 492 ~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 571 (805)
...+|.|..+.. ..+.+|+.++|.|.+.+ ..|.+.++|+|+|..+..+.++.+. .+...|.|.+++.+|+|.|+|
T Consensus 4 ~~~~P~~~~~~~--~~v~~G~~v~l~C~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C 78 (317)
T 2y25_A 4 PFTGPHFVEYLS--WEVTGECNVLLKCKVAN-IKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEV 78 (317)
T ss_dssp SSSCCEEEEEEE--EEEETTTEEEEEEEEES-CCTTCEEEEEETTEEECCSCC-------CCEEEEETTCCSTTCSCEEE
T ss_pred ccCCCcEeeeee--EEECCCCeEEEEEEEcC-CCCCCEEEEEECCeEcCCCCcEEEE--CCeEEEEEccCCcccCeEEEE
Confidence 356788886553 45899999999999983 2378899999999999877766554 334679999999999999999
Q ss_pred EEEcCCcceEEEEEEEEeeeee---------------eeec---------------CCCCeEEEEECCEEccCCCceEEE
Q psy2166 572 RATNKYGSDVTKASLKCVSKTN---------------LILE---------------SQLPEVEWFYNGKKLPHGHRYRTF 621 (805)
Q Consensus 572 ~a~n~~g~~~~~~~l~V~~~~~---------------~~~~---------------~~~p~v~W~~~g~~l~~~~~~~~~ 621 (805)
.|.|..|.....+.|.|...+. +.+. .|.|.+.|+++|..+..+.++.+.
T Consensus 79 ~~~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~ 158 (317)
T 2y25_A 79 ILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTG 158 (317)
T ss_dssp EEESSSCEEEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEE
T ss_pred EEECCCCcEEEEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEe
Confidence 9999999887776665543221 1111 367899999999999888888888
Q ss_pred eeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeecccccccccc-ccccCCCCCCCCCCCCCCCeeeec-CC
Q psy2166 622 HDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQL-PELRRQPAGVPDSEDGRPPQFTSE-FQ 699 (805)
Q Consensus 622 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~-p~~~~~~~~~~~~~~~~~P~~~~~-~~ 699 (805)
..++...|.|.++..+|+|.|+|.|.|..|.....+.|.|........+... +.. ......+|.+... +.
T Consensus 159 ~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~--------~~~~~~~p~~~~~~~~ 230 (317)
T 2y25_A 159 VTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQA--------AIAEKNRARVLGGLPD 230 (317)
T ss_dssp ECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHH--------HHHTTTSCEEEEBCCS
T ss_pred ccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCc--------ccCcCCCCcccccCCc
Confidence 8888889999999999999999999999999888888876532111111000 000 0000134555554 44
Q ss_pred cccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEee-CcEEEEEEcCCCCCCCEEEEEEEEcCCccEEE
Q psy2166 700 HLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA-FGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 778 (805)
Q Consensus 700 ~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~ 778 (805)
.. .+.+|+.+.|.|.+. |+|.|.|+|+|+|+.+..+.++.+..+ ++...|.|.++..+|+|.|+|.|.|.+|..+.
T Consensus 231 ~~-~v~~g~~~~l~C~~~--g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~ 307 (317)
T 2y25_A 231 VV-TIQEGKALNLTCNVW--GDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETS 307 (317)
T ss_dssp EE-EEETTSBBCEEEEEE--CSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEE
T ss_pred cE-EEEcCCEEEEEEEEe--cCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEE
Confidence 45 899999999999999 999999999999999998888887666 66789999999999999999999999999999
Q ss_pred EEEEEEEE
Q psy2166 779 SVNLECVV 786 (805)
Q Consensus 779 ~~~l~V~~ 786 (805)
++.|.|.+
T Consensus 308 ~~~l~V~~ 315 (317)
T 2y25_A 308 DFTVSVFI 315 (317)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEEc
Confidence 99999874
|
| >1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-34 Score=313.90 Aligned_cols=370 Identities=15% Similarity=0.162 Sum_probs=234.5
Q ss_pred CCCceecCCCcEEEEEEEecCCCC--CceEEEEEC--CEe---c--------------CCCCceEEEec--CcEEEEEEc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDP--NLKIEWIFN--GKP---L--------------ELGSRFKTTAD--FGFVTLDLT 129 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p--~~~v~W~k~--g~~---i--------------~~~~~~~~~~~--~~~~~L~I~ 129 (805)
++.+.+.+|+.++|.|.+. +.+ .+.|.|+|+ |.. + ....|+.+..+ ++..+|.|.
T Consensus 7 ~~~~~v~~G~~v~L~C~~~--~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (457)
T 1hzh_H 7 SGAEVKKPGASVKVSCQAS--GYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELR 84 (457)
T ss_dssp CCCEEECTTCCEEECEEEE--SSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred CCceEEcCCCCEEEEEEec--CccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEEC
Confidence 3467899999999999998 444 678999984 321 1 12357777654 467799999
Q ss_pred ccccCCCeEEEEEEEeCCe------------eEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCC
Q psy2166 130 EVYDRDQGIYTCRAWNLAG------------ETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDS 197 (805)
Q Consensus 130 ~~~~~D~G~Y~C~a~n~~g------------~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (805)
+++.+|+|.|+|.+.|..| .....+.|.|....
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~----------------------------------- 129 (457)
T 1hzh_H 85 SLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSAS----------------------------------- 129 (457)
T ss_dssp SCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCC-----------------------------------
T ss_pred CCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCC-----------------------------------
Confidence 9999999999999998765 12234556664311
Q ss_pred CCCCCCceecccccccccCCCceEEEEEEEeeCCCCC-eEEEEEECCEEccCCCcEEEEEEcC----eEEEEEcCCCCcc
Q psy2166 198 EDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQT-MTVEFLYNGKPIEASHRIRTVHAFG----MVVLEILGTKIED 272 (805)
Q Consensus 198 ~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~-~~i~W~k~g~~l~~~~~~~~~~~~~----~~~L~i~~~~~~d 272 (805)
..+|.+....+.. .+.+|+.++|.|.+. ...|. +.|.|+|+|..+...........++ .+.|.|.++..+|
T Consensus 130 --~~~P~i~~~~~~~-~~~~g~~v~L~C~~~-g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d 205 (457)
T 1hzh_H 130 --TKGPSVFPLAPSS-KSTSGGTAALGCLVK-DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT 205 (457)
T ss_dssp --CBCCEEEEECCCS-CCCTTCCEEEEEEEE-SBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT
T ss_pred --CCCCeEEecCccc-cccCCCcEEEEEEEe-EEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC
Confidence 1234444333222 367999999999985 23364 8999999997543211111111112 2479999999999
Q ss_pred cEEEEEEEEcCCeeEEEEEEEEEeccC------------CCCCCeEEecCCCcc-cccCCCeEEEEEEEeecCCCC----
Q psy2166 273 TGVYTCRATNKWGQAEISVNLECVDKS------------KGQPPKFTSHIKSLE-GLKDGDSAHFECTLTPVNDPE---- 335 (805)
Q Consensus 273 ~G~Y~C~~~n~~g~~~~~~~l~v~~~~------------~~~~p~~~~~~~~~~-~~~~g~~~~l~C~~~~~~~p~---- 335 (805)
|.|+|.|.|..+.......+.+.... ...+|.+...+.... .+.+|+.++|.|.+. +.+.
T Consensus 206 -G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~--g~~p~p~~ 282 (457)
T 1hzh_H 206 -QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVV--DVSHEDPE 282 (457)
T ss_dssp -SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEE--CCCTTCCC
T ss_pred -ceEEEEEEeCCCCcceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEE--cccCCCCc
Confidence 99999999987776555544432110 012455423232222 257899999999998 5543
Q ss_pred cEEEEEECCEEccCCCceEE-EEeCcEE----EEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChh
Q psy2166 336 LKVEWFHNGKPIFHKNRVKM-VSDFGFV----VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPE 410 (805)
Q Consensus 336 ~~v~W~~~g~~l~~~~~~~~-~~~~~~~----~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~ 410 (805)
+.|.|+|++..+........ ...++.+ .|.|.....+|+|.|+|.|.|..+.......+.+
T Consensus 283 ~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~-------------- 348 (457)
T 1hzh_H 283 VKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISK-------------- 348 (457)
T ss_dssp CEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECC--------------
T ss_pred eEEEEEeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEc--------------
Confidence 39999999988754321111 1112211 1223333334499999999987654432222221
Q ss_pred HHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccC
Q psy2166 411 SLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAA 490 (805)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~ 490 (805)
..
T Consensus 349 ------------------------------------------------------------------------------~~ 350 (457)
T 1hzh_H 349 ------------------------------------------------------------------------------AK 350 (457)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------cc
Confidence 01
Q ss_pred CCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEE--EeeCC---EEEEEEccCCCCC
Q psy2166 491 PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT--FHDFG---IVILDILYCYEEN 565 (805)
Q Consensus 491 ~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~--~~~~~---~~~L~i~~v~~~d 565 (805)
.+..+|.+....+....+..|+ ++|.|.+.+...|.+.|+|+|||.++........ ..++. .+.|.|.....+|
T Consensus 351 ~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~ 429 (457)
T 1hzh_H 351 GQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQ 429 (457)
T ss_dssp CCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHT
T ss_pred CCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChHHccC
Confidence 1246777777655544456666 9999999964334469999999999864322111 12222 2346677666678
Q ss_pred CEEEEEEEEcCCcc
Q psy2166 566 SGVYECRATNKYGS 579 (805)
Q Consensus 566 ~G~Y~C~a~n~~g~ 579 (805)
+|.|+|.|.|....
T Consensus 430 ~g~YtC~a~n~~l~ 443 (457)
T 1hzh_H 430 GNVFSCSVMHEALH 443 (457)
T ss_dssp TCCEEEEEECTTSG
T ss_pred CCeEEEEEEECCCC
Confidence 99999999997654
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-33 Score=286.48 Aligned_cols=285 Identities=23% Similarity=0.326 Sum_probs=209.1
Q ss_pred CcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEE--ecCcEEEEEEccccc-CCCeE
Q psy2166 62 TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTT--ADFGFVTLDLTEVYD-RDQGI 138 (805)
Q Consensus 62 ~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~--~~~~~~~L~I~~~~~-~D~G~ 138 (805)
...+|.|...+. ++.+.+|+.++|.|.+. |.|.+.|+|+|+|..+..+ ++.+. .++....|.|.+++. +|+|.
T Consensus 3 ~~~~P~~~~~p~-~~~v~~G~~v~l~C~~~--g~p~~~i~W~k~g~~i~~~-~~~~~~~~~~~~~~L~i~~~~~~~D~G~ 78 (304)
T 2yd9_A 3 GEEPPRFIKEPK-DQIGVSGGVASFVCQAT--GDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGAVLRIQPLRTPRDENV 78 (304)
T ss_dssp -CCCCEEEECCC-CEEEETTSCEEEEEEEE--CSSCCEEEEC-------CT-TEEEEEETTTTEEEEEECSCCTTTTCSE
T ss_pred CccCCeeeecCC-ceEecCCCeEEEEEEEE--EeCCCeEEEEECCEECCCC-ceEEEEecCCCceEEEEecccccCCCeE
Confidence 345788877665 78899999999999998 6888899999999988644 55443 233457899999998 99999
Q ss_pred EEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCC
Q psy2166 139 YTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEG 218 (805)
Q Consensus 139 Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g 218 (805)
|+|.|.|..|.......|.|..++.. | ...|.+...+... .+.+|
T Consensus 79 Y~C~a~n~~g~~~~~~~l~V~~~~~~------p----------------------------~~~p~i~~~~~~~-~v~~g 123 (304)
T 2yd9_A 79 YECVAQNSVGEITVHAKLTVLREDQL------P----------------------------SGFPNIDMGPQLK-VVERT 123 (304)
T ss_dssp EEEEEECSSCEECCEEEEEEECGGGC------C----------------------------TTCCEEEECCCCE-EEETT
T ss_pred EEEEEECCCCeEEEEEEEEEeccccC------C----------------------------CCCCeeecCCccE-EEeCC
Confidence 99999999998888888888764321 0 0235565555443 47899
Q ss_pred ceEEEEEEEeeCCCCCeEEEEEECCEEccCCC---cEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEE-EEEE
Q psy2166 219 EIAHFEASLIPVGDQTMTVEFLYNGKPIEASH---RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS-VNLE 294 (805)
Q Consensus 219 ~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~---~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~-~~l~ 294 (805)
+.+.|.|.+ .+.|.+.+.|+++|..+.... ++. ......|.|.+++.+|+|.|+|.|.|..|..... ..+.
T Consensus 124 ~~v~l~C~~--~g~p~~~v~W~k~~~~~~~~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~ 198 (304)
T 2yd9_A 124 RTATMLCAA--SGNPDPEITWFKDFLPVDPSASNGRIK---QLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLY 198 (304)
T ss_dssp SCEEECCEE--ECSSCCEEEEEETTEECCGGGGTTSEE---ECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred CeEEEEEEC--ccCCCCeEEEEECCEECcCCCCcceEE---eCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEE
Confidence 999999998 688889999999999887542 222 1122379999999999999999999998876533 4444
Q ss_pred EeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCcEEEEEEcccCcCCc
Q psy2166 295 CVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDS 374 (805)
Q Consensus 295 v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~ 374 (805)
|.... .+|.+...+.... +.+|+.++|.|.+. +.|.+.|.|+++|..+.....+. .+...|.|.++ +|+
T Consensus 199 v~~~~--~~P~~~~~~~~~~-v~~G~~v~l~C~~~--g~p~p~v~W~~~~~~l~~~~~~~----~~~~~L~i~~~--~d~ 267 (304)
T 2yd9_A 199 VRVQN--VAPRFSILPMSHE-IMPGGNVNITCVAV--GSPMPYVKWMQGAEDLTPEDDMP----VGRNVLELTDV--KDS 267 (304)
T ss_dssp EECCC--EEEEEEECCCCBC-CCTTCCEEEEEEEE--EESCCEEEEEETTEECSCSSSCC----BSEEEEEECSC--CSC
T ss_pred EEeec--cCCcEEecCCceE-EcCCCeEEEEEEEe--eeCCCEEEEEECCEECCCccccc----CCcEEEEEccc--ccC
Confidence 43211 4566666655543 88999999999998 78899999999999997654432 24456777765 699
Q ss_pred eEEEEEEEeCceeeEEEEEEEEEeccc
Q psy2166 375 GEYVCRAWNKYGEDFTRATIKCFGKGG 401 (805)
Q Consensus 375 G~Y~C~a~n~~g~~~~~~~l~V~~~~~ 401 (805)
|.|+|.|.|..|.....+.|.|.+++.
T Consensus 268 G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 294 (304)
T 2yd9_A 268 ANYTCVAMSSLGVIEAVAQITVKSLPK 294 (304)
T ss_dssp EEEEEEEEETTEEEEEEEEEC------
T ss_pred EEEEEEEEeCCCcEEEEEEEEEecCcc
Confidence 999999999999999999999876543
|
| >2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=288.43 Aligned_cols=282 Identities=22% Similarity=0.356 Sum_probs=209.4
Q ss_pred CCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEE-Ec-CeEEEEEcCCCC-cccEEEE
Q psy2166 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH-AF-GMVVLEILGTKI-EDTGVYT 277 (805)
Q Consensus 201 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~-~~-~~~~L~i~~~~~-~d~G~Y~ 277 (805)
.||.|...+.+. .+.+|+.++|.|.+ .+.|.+.|.|+|+|..+... ++.... .+ ....|.|.+++. +|+|.|+
T Consensus 5 ~~P~~~~~p~~~-~v~~G~~v~l~C~~--~g~p~~~i~W~k~g~~i~~~-~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~ 80 (304)
T 2yd9_A 5 EPPRFIKEPKDQ-IGVSGGVASFVCQA--TGDPKPRVTWNKKGKKVNSQ-RFETIEFDESAGAVLRIQPLRTPRDENVYE 80 (304)
T ss_dssp CCCEEEECCCCE-EEETTSCEEEEEEE--ECSSCCEEEEC-------CT-TEEEEEETTTTEEEEEECSCCTTTTCSEEE
T ss_pred cCCeeeecCCce-EecCCCeEEEEEEE--EEeCCCeEEEEECCEECCCC-ceEEEEecCCCceEEEEecccccCCCeEEE
Confidence 678898888776 48899999999998 57888999999999988654 343332 22 247899999998 9999999
Q ss_pred EEEEcCCeeEEEEEEEEEeccCCC--CCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCC---c
Q psy2166 278 CRATNKWGQAEISVNLECVDKSKG--QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN---R 352 (805)
Q Consensus 278 C~~~n~~g~~~~~~~l~v~~~~~~--~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~---~ 352 (805)
|.+.|..|.....+.|.|...+.. ..|.+...+.... +.+|+.+.|.|.+. +.|.+.+.|++++..+.... +
T Consensus 81 C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~-v~~g~~v~l~C~~~--g~p~~~v~W~k~~~~~~~~~~~~~ 157 (304)
T 2yd9_A 81 CVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKV-VERTRTATMLCAAS--GNPDPEITWFKDFLPVDPSASNGR 157 (304)
T ss_dssp EEEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEE-EETTSCEEECCEEE--CSSCCEEEEEETTEECCGGGGTTS
T ss_pred EEEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEE-EeCCCeEEEEEECc--cCCCCeEEEEECCEECcCCCCcce
Confidence 999999998888888888754321 2266666555444 88999999999997 88999999999999987532 3
Q ss_pred eEEEEeCcEEEEEEcccCcCCceEEEEEEEeCceeeEEE-EEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccC
Q psy2166 353 VKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTR-ATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAA 431 (805)
Q Consensus 353 ~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 431 (805)
+.... .+ .|.|.++..+|+|.|+|.|.|..|..... +.+.|...
T Consensus 158 ~~~~~-~~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~-------------------------------- 202 (304)
T 2yd9_A 158 IKQLR-SG--ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQ-------------------------------- 202 (304)
T ss_dssp EEECT-TS--CEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECC--------------------------------
T ss_pred EEeCC-Ce--EEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEee--------------------------------
Confidence 32222 22 69999999999999999999999877654 55555311
Q ss_pred cccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCC
Q psy2166 432 PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEG 511 (805)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G 511 (805)
..+|.+...+... .+.+|
T Consensus 203 -------------------------------------------------------------~~~P~~~~~~~~~-~v~~G 220 (304)
T 2yd9_A 203 -------------------------------------------------------------NVAPRFSILPMSH-EIMPG 220 (304)
T ss_dssp -------------------------------------------------------------CEEEEEEECCCCB-CCCTT
T ss_pred -------------------------------------------------------------ccCCcEEecCCce-EEcCC
Confidence 2456666655553 38899
Q ss_pred CeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeee
Q psy2166 512 QSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSK 591 (805)
Q Consensus 512 ~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 591 (805)
+.++|.|.+. |.|.|.|+|+++|..+..+.++. .+...|.|.++ +|+|.|+|.|.|..|.....+.|.|...
T Consensus 221 ~~v~l~C~~~--g~p~p~v~W~~~~~~l~~~~~~~----~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 292 (304)
T 2yd9_A 221 GNVNITCVAV--GSPMPYVKWMQGAEDLTPEDDMP----VGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSL 292 (304)
T ss_dssp CCEEEEEEEE--EESCCEEEEEETTEECSCSSSCC----BSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC----
T ss_pred CeEEEEEEEe--eeCCCEEEEEECCEECCCccccc----CCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecC
Confidence 9999999999 67888999999999997665432 34556888765 6999999999999999999999999887
Q ss_pred eee
Q psy2166 592 TNL 594 (805)
Q Consensus 592 ~~~ 594 (805)
+.+
T Consensus 293 ~~~ 295 (304)
T 2yd9_A 293 PKA 295 (304)
T ss_dssp ---
T ss_pred ccc
Confidence 653
|
| >2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=293.71 Aligned_cols=288 Identities=18% Similarity=0.262 Sum_probs=221.6
Q ss_pred CcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEE
Q psy2166 62 TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTC 141 (805)
Q Consensus 62 ~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 141 (805)
.+.+|.|..++ ++.+.+|+.++|.|.+.+ ..|.+.|.|+|+|..+..+.++.+.. +..+|.|.+++.+|+|.|+|
T Consensus 4 ~~~~P~~~~~~--~~~v~~G~~v~l~C~~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C 78 (317)
T 2y25_A 4 PFTGPHFVEYL--SWEVTGECNVLLKCKVAN-IKKETHIVWYKDEREISVDEKHDFKD--GICTLLITEFSKKDAGIYEV 78 (317)
T ss_dssp SSSCCEEEEEE--EEEEETTTEEEEEEEEES-CCTTCEEEEEETTEEECCSCC-------CCEEEEETTCCSTTCSCEEE
T ss_pred ccCCCcEeeee--eEEECCCCeEEEEEEEcC-CCCCCEEEEEECCeEcCCCCcEEEEC--CeEEEEEccCCcccCeEEEE
Confidence 45678888655 489999999999999983 23788999999999999877776653 34689999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceE
Q psy2166 142 RAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIA 221 (805)
Q Consensus 142 ~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~ 221 (805)
.+.|..|.......|.|...+. +...+... .+.+|+.+
T Consensus 79 ~~~n~~g~~~~~~~l~v~~~~~-----------------------------------------~~~~~~~~-~~~~g~~~ 116 (317)
T 2y25_A 79 ILKDDRGKDKSRLKLVDEAFKE-----------------------------------------LMMEVCKK-IALSATDL 116 (317)
T ss_dssp EEESSSCEEEEEECCSTHHHHH-----------------------------------------HHHHHHHH-HHTCBCCC
T ss_pred EEECCCCcEEEEEEEEEecCcc-----------------------------------------ccccCCce-ecccCCCe
Confidence 9999988776655554432211 11111111 24456666
Q ss_pred EEEEEEee-------C-CCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEE
Q psy2166 222 HFEASLIP-------V-GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293 (805)
Q Consensus 222 ~l~C~~~~-------~-~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l 293 (805)
.|.|.+.. . +.|.+.+.|+++|..+....++......+...|.|.+++.+|+|.|+|.|.|..|....++.+
T Consensus 117 ~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 196 (317)
T 2y25_A 117 KIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDL 196 (317)
T ss_dssp EEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred EEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEE
Confidence 66665411 1 268899999999999988888877777777889999999999999999999999988888877
Q ss_pred EEec---------------cCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEe
Q psy2166 294 ECVD---------------KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD 358 (805)
Q Consensus 294 ~v~~---------------~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~ 358 (805)
.+.. .....+|.+.........+.+|+.+.|.|.+. +.|.+.+.|+++|..+....++.+...
T Consensus 197 ~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~--g~p~p~i~W~~~g~~~~~~~~~~~~~~ 274 (317)
T 2y25_A 197 SGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVW--GDPPPEVSWLKNEKALASDDHCNLKFE 274 (317)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEE--CSSCCEEEEEESSSEECCCSSEEECCB
T ss_pred eeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEEe--cCCCCEEEEEECCEeCCCCCcEEEEEc
Confidence 6531 11113455555444444588999999999998 899999999999999988777777655
Q ss_pred -CcEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEe
Q psy2166 359 -FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFG 398 (805)
Q Consensus 359 -~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 398 (805)
+....|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus 275 ~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 315 (317)
T 2y25_A 275 AGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 315 (317)
T ss_dssp TTTEEEEEEBSCCSTTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CCCEEEEEECCCCHHHCEEEEEEEEeCCCeEEEEEEEEEEc
Confidence 6667899999999999999999999999999999998864
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=281.67 Aligned_cols=258 Identities=23% Similarity=0.390 Sum_probs=201.6
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEE-CCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEE
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFY-NGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECR 572 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 572 (805)
.+|.+...+.+.. +.+|+.++|.|.+. +.|. .+.|++ +|..+..+.++.+..++....|.|.+++.+|+|.|+|.
T Consensus 3 ~~p~v~~~~~~~~-v~~G~~v~l~C~~~--~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 78 (291)
T 2wim_A 3 ALLQVTISLSKVE-LSVGESKFFTCTAI--GEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQ 78 (291)
T ss_dssp CCCEEEESCSEEE-EETTCCEEEEEEEE--SCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred CCceEEEeccceE-ecCCCcEEEEEEEe--CCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEE
Confidence 5688888777665 99999999999999 6665 999999 88888888888888888888999999999999999999
Q ss_pred EEcCCcce-EEEEEEEEeeeeee---------------eec-----CCCCeEEEEECCEEccC--CCceEEEeeCCEEEE
Q psy2166 573 ATNKYGSD-VTKASLKCVSKTNL---------------ILE-----SQLPEVEWFYNGKKLPH--GHRYRTFHDFGIVIL 629 (805)
Q Consensus 573 a~n~~g~~-~~~~~l~V~~~~~~---------------~~~-----~~~p~v~W~~~g~~l~~--~~~~~~~~~~~~~~L 629 (805)
|.|..|.. ...+.|.|..++.+ .+. .|.|.+.|++++..+.. ..++.+..++ .|
T Consensus 79 ~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~L 155 (291)
T 2wim_A 79 ATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN---NL 155 (291)
T ss_dssp EECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTS---CE
T ss_pred EecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCC---CE
Confidence 99998876 45667777655432 222 25679999999988864 4455544443 39
Q ss_pred EeccCCCCCcEEEEEEEEeCCcceE--EEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCC--cccccC
Q psy2166 630 DILYCYEENSGVYECRATNKYGSDV--TKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQ--HLSNLS 705 (805)
Q Consensus 630 ~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~--~~~~v~ 705 (805)
.|.++..+|+|.|+|.|.|..+... ..+.|.|.. +|.+...+. .. .+.
T Consensus 156 ~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~---------------------------~p~~~~~~~~~~~-~~~ 207 (291)
T 2wim_A 156 QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNV---------------------------PPAISMPQKSFNA-TAE 207 (291)
T ss_dssp EETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEB---------------------------CCCCBCSCSEEEC-CSS
T ss_pred EEEecchhhCEEEEEEEEECCCCeeEEeeEEEEecc---------------------------CCccccCcccccc-eec
Confidence 9999999999999999999986544 345555653 444444333 34 789
Q ss_pred CCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 706 EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
+|+.+.|.|.+. |.|.|.|+|+|+|..+..+.++.+....+ .|.|.++..+|+|.|+|.|.|.+|..+.++.|.|.
T Consensus 208 ~g~~~~l~C~~~--g~p~p~v~W~~~g~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~ 283 (291)
T 2wim_A 208 RGEEMTFSCRAS--GSPEPAISWFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 283 (291)
T ss_dssp SCCEEEEECBCC--CBSCCEEEEEETTEECCCTTTEEECSTTC--EEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC-
T ss_pred CCCeEEEEEEee--cCCCCeEEEEECCEECcCCccEEEcCCcc--EEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEE
Confidence 999999999998 99999999999999999888876544444 79999999999999999999999999999999998
Q ss_pred EeCCC
Q psy2166 786 VWSPS 790 (805)
Q Consensus 786 ~~~~~ 790 (805)
.++|.
T Consensus 284 ~~~~~ 288 (291)
T 2wim_A 284 VQHHH 288 (291)
T ss_dssp -----
T ss_pred Eeccc
Confidence 87764
|
| >1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=301.70 Aligned_cols=384 Identities=13% Similarity=0.130 Sum_probs=227.8
Q ss_pred ccCCCceEEEEEEEeeCCCCCeEEEEEEC--CEEcc-----------------CCCcEEEEEE--cCeEEEEEcCCCCcc
Q psy2166 214 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--GKPIE-----------------ASHRIRTVHA--FGMVVLEILGTKIED 272 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~p~~~i~W~k~--g~~l~-----------------~~~~~~~~~~--~~~~~L~i~~~~~~d 272 (805)
.+.+|+.++|.|.+.....+.+.+.|||+ |..+. ...++..... .+...|.|.+++.+|
T Consensus 11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D 90 (444)
T 1igt_B 11 LVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRLKSED 90 (444)
T ss_dssp EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred EEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCCCHHH
Confidence 47899999999998422113578999985 33210 1235554443 346789999999999
Q ss_pred cEEEEEEEEcCCee---EEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCc-EEEEEECCEEcc
Q psy2166 273 TGVYTCRATNKWGQ---AEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPEL-KVEWFHNGKPIF 348 (805)
Q Consensus 273 ~G~Y~C~~~n~~g~---~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~-~v~W~~~g~~l~ 348 (805)
+|.|+|.+.|..+. ....+.|.|..... .+|.+........ +.+|+.++|.|.+.+ ..|.+ .|.|++++..+.
T Consensus 91 ~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~-~~P~i~~~~~~~~-~~~g~~v~L~C~~~g-~~P~p~~v~W~~~~~~~~ 167 (444)
T 1igt_B 91 TAMYYCARHGGYYAMDYWGQGTTVTVSSAKT-TAPSVYPLAPVCG-DTTGSSVTLGCLVKG-YFPEPVTLTWNSGSLSSG 167 (444)
T ss_dssp CEEEEEEEECSSSCEEEEBCCEEEEECSCCC-BCCEEEEECCCSS-CCCSSCEEEEEEEEE-EBSSCCEEEEGGGTBCTT
T ss_pred CEEEEEEEecCCcccccccCcEEEEecCCCC-CCCceeEeccccc-CCCCCcEEEEEEEcc-eeCCCcEEEEecCCCCCC
Confidence 99999999987543 12334666653211 2444443333332 578999999999984 34665 999999987642
Q ss_pred CCCceEEEEeC---cEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCC
Q psy2166 349 HKNRVKMVSDF---GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQ 425 (805)
Q Consensus 349 ~~~~~~~~~~~---~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 425 (805)
..........+ ....|.|.++..+| |.|+|.|.|..|.......+.+..
T Consensus 168 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~--------------------------- 219 (444)
T 1igt_B 168 VHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRG--------------------------- 219 (444)
T ss_dssp EEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCC---------------------------
T ss_pred eEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCC---------------------------
Confidence 11000000111 12358899999889 999999999998765444332210
Q ss_pred CccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCc
Q psy2166 426 PVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDV 505 (805)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~ 505 (805)
...+.|... .........+|.+...++..
T Consensus 220 ----------------------------------------~~~~~~~~~-----------~~~~~~~~~~p~v~~~~p~~ 248 (444)
T 1igt_B 220 ----------------------------------------PTIKPCPPC-----------KCPAPNLLGGPSVFIFPPKI 248 (444)
T ss_dssp ----------------------------------------CSCCCCCCC-----------SCCCSCCCCCCEEEEECCCH
T ss_pred ----------------------------------------CCcccCCcc-----------ccCCcccCCCceEEecCCch
Confidence 011111100 00001123466664444443
Q ss_pred cc-ccCCCeEEEEEEEeeCC--CCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEE
Q psy2166 506 TQ-LKEGQSAHFEARLTPVT--DPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVT 582 (805)
Q Consensus 506 ~~-v~~G~~v~L~C~v~~~g--~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 582 (805)
.. +.+|++++|.|.+.+.+ .|.+.|+|+|+|..+.......... ...|.|.-.
T Consensus 249 ~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~--------------~~~~~~~~~---------- 304 (444)
T 1igt_B 249 KDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHRE--------------DYNSTLRVV---------- 304 (444)
T ss_dssp HHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEE--------------ECSSSEEEE----------
T ss_pred hheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCccccccee--------------CCCCcEEEE----------
Confidence 33 58999999999999532 2457999999999886432110000 001111100
Q ss_pred EEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEe
Q psy2166 583 KASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 662 (805)
Q Consensus 583 ~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 662 (805)
. .|.|.++..+|+|.|+|.|.|..|.......+.+.
T Consensus 305 ---------~-----------------------------------~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~ 340 (444)
T 1igt_B 305 ---------S-----------------------------------ALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKP 340 (444)
T ss_dssp ---------E-----------------------------------EEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred ---------E-----------------------------------EEEEcHHHhccCCcEEEEEEcCCCCCceEEEEecc
Confidence 0 05556666666666666666666655322222210
Q ss_pred eccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecC-CCCe-EEEEEECCEEccCCCC
Q psy2166 663 SKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG-DQTM-TVEFLYNGKPIEASHR 740 (805)
Q Consensus 663 ~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g-~p~~-~v~W~~~g~~l~~~~~ 740 (805)
. ....+|.+...+.....+..| .++|.|.+. | +|.+ .|+|+|||..+.....
T Consensus 341 ~-----------------------~~~~~P~v~~~~~~~~~~~~~-~~~L~C~~~--g~~P~~~~v~W~k~g~~l~~~~~ 394 (444)
T 1igt_B 341 K-----------------------GSVRAPQVYVLPPPEEEMTKK-QVTLTCMVT--DFMPEDIYVEWTNNGKTELNYKN 394 (444)
T ss_dssp C-----------------------CCCBCCEEEEECCCGGGTTSS-EEEEEEEEE--EEBSSCCEEEEEETTEECSSEEE
T ss_pred C-----------------------CCCCCCEEEEeCCChHHccCC-eEEEEEEEE--eeeCCCCEEEEEECCEEcccccc
Confidence 0 001466666544433134445 599999998 6 5655 9999999998854221
Q ss_pred eEE-EeeCc----EEEEEEcCCCCCCCEEEEEEEEcCC
Q psy2166 741 IRT-VHAFG----MVVLEILGTKIEDTGVYTCRATNKW 773 (805)
Q Consensus 741 ~~~-~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~ 773 (805)
... ...++ ...|.|.....+|+|.|+|.|.|..
T Consensus 395 ~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~ 432 (444)
T 1igt_B 395 TEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG 432 (444)
T ss_dssp CCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred ccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCC
Confidence 111 12233 2357777777788999999999975
|
| >1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-31 Score=295.23 Aligned_cols=370 Identities=14% Similarity=0.130 Sum_probs=234.8
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec-----------------CCCCceEEEec--CcEEEEEEcc
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL-----------------ELGSRFKTTAD--FGFVTLDLTE 130 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i-----------------~~~~~~~~~~~--~~~~~L~I~~ 130 (805)
.+..+.+.+|+.++|.|.+.+...+.+.|.|+|+ |..+ ...+|+.+..+ ++..+|.|.+
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 86 (475)
T 1iga_A 7 QSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSS 86 (475)
T ss_pred cCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECC
Confidence 3446789999999999999842123678999995 3211 01357776654 3567899999
Q ss_pred cccCCCeEEEEEEEeCCee------EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCc
Q psy2166 131 VYDRDQGIYTCRAWNLAGE------TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQ 204 (805)
Q Consensus 131 ~~~~D~G~Y~C~a~n~~g~------~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 204 (805)
++.+|+|.|+|.+.+..|. ....+.|.|.... ..+|.
T Consensus 87 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~-------------------------------------~~~P~ 129 (475)
T 1iga_A 87 LRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSAS-------------------------------------PTSPK 129 (475)
T ss_pred CChhhCEEEEEEEeccCCCccceeeecCceEEEeccCC-------------------------------------CcCCe
Confidence 9999999999999987652 2234456664311 02344
Q ss_pred eecccccccccCCCceEEEEEEEeeCCC-CC--eEEEEEECCEEccCCCcEEEE-EEcC----eEEEEEcCCCCcccEEE
Q psy2166 205 FTSEFQHLSNLSEGEIAHFEASLIPVGD-QT--MTVEFLYNGKPIEASHRIRTV-HAFG----MVVLEILGTKIEDTGVY 276 (805)
Q Consensus 205 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~-p~--~~i~W~k~g~~l~~~~~~~~~-~~~~----~~~L~i~~~~~~d~G~Y 276 (805)
+...... .+.+|+.++|.|.+. +. |. +.|.|++++............ ..++ ...|.|..+..+|+|.|
T Consensus 130 i~~~~~~--~~~~g~~v~L~C~~~--g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y 205 (475)
T 1iga_A 130 VFPLSLC--STQPDGNVVIACLVQ--GFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSV 205 (475)
T ss_pred EEecCcc--ccCCCCeEEEEEEEe--eecCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceE
Confidence 3332221 236899999999984 43 55 499999988532211000000 1111 24688989999999999
Q ss_pred EEEEEcCCeeE-EEEEEEEEecc-------------CCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCC---cEEE
Q psy2166 277 TCRATNKWGQA-EISVNLECVDK-------------SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE---LKVE 339 (805)
Q Consensus 277 ~C~~~n~~g~~-~~~~~l~v~~~-------------~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~---~~v~ 339 (805)
+|.|.|..+.. ...+.+.|... ....+|.+...+.....+.+|+.++|.|.+. +.++ +.|.
T Consensus 206 ~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~--g~~p~~~~~i~ 283 (475)
T 1iga_A 206 TCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLT--GLRDASGVTFT 283 (475)
T ss_pred EEEEEECCCCceeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEE--cccCCCceEEE
Confidence 99999987632 23333222100 0002444433333222258999999999998 4433 6999
Q ss_pred EEECCEEccCCCc-eEEEE-eC---cEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHH
Q psy2166 340 WFHNGKPIFHKNR-VKMVS-DF---GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLAR 414 (805)
Q Consensus 340 W~~~g~~l~~~~~-~~~~~-~~---~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~ 414 (805)
| ++..+..... ..... ++ ....|.|.++..+|+|.|+|.|.|..|.......|.+.
T Consensus 284 W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~----------------- 344 (475)
T 1iga_A 284 W--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKS----------------- 344 (475)
T ss_pred E--CCCCcCCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecC-----------------
Confidence 9 4444332111 10000 11 23369999999999999999999998875444444221
Q ss_pred HHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCC
Q psy2166 415 IRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAE 494 (805)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~ 494 (805)
.+..
T Consensus 345 ----------------------------------------------------------------------------~~~~ 348 (475)
T 1iga_A 345 ----------------------------------------------------------------------------GNTF 348 (475)
T ss_pred ----------------------------------------------------------------------------CCCC
Confidence 1145
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCce----EEE---eeCC---EEEEEEccCCCC
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY----RTF---HDFG---IVILDILYCYEE 564 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~----~~~---~~~~---~~~L~i~~v~~~ 564 (805)
+|.+....+....+.+|+.++|.|.+.++.++.+.|+|+|||+.|..+... ... .++. .+.|.|.....+
T Consensus 349 ~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~ 428 (475)
T 1iga_A 349 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWK 428 (475)
T ss_pred CCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhc
Confidence 677766555443478999999999999532345699999999999765311 111 1222 245888887778
Q ss_pred CCEEEEEEEEcCCcc
Q psy2166 565 NSGVYECRATNKYGS 579 (805)
Q Consensus 565 d~G~Y~C~a~n~~g~ 579 (805)
|.|.|+|.|.|....
T Consensus 429 ~~g~YtC~a~n~~l~ 443 (475)
T 1iga_A 429 KGDTFSCMVGHEALP 443 (475)
T ss_pred CCCEEEEEEEcCCCC
Confidence 999999999997643
|
| >2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=276.12 Aligned_cols=277 Identities=23% Similarity=0.368 Sum_probs=209.8
Q ss_pred CCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEE-CCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEE
Q psy2166 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF-NGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 64 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k-~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
.+|.+...+. ++.+.+|+.++|.|.+. +.|. .|.|+| +|..+..+.++.+..++...+|.|.+++.+|+|.|+|.
T Consensus 3 ~~p~v~~~~~-~~~v~~G~~v~l~C~~~--~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 78 (291)
T 2wim_A 3 ALLQVTISLS-KVELSVGESKFFTCTAI--GEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQ 78 (291)
T ss_dssp CCCEEEESCS-EEEEETTCCEEEEEEEE--SCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred CCceEEEecc-ceEecCCCcEEEEEEEe--CCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEE
Confidence 4677777665 68999999999999998 4554 899999 78888888899888888888999999999999999999
Q ss_pred EEeCCeeEE-EEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceE
Q psy2166 143 AWNLAGETF-TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIA 221 (805)
Q Consensus 143 a~n~~g~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~ 221 (805)
+.|..|... ....|.|..++ .+...+... .+.+|+.+
T Consensus 79 ~~n~~g~~~~~~~~l~v~~~~-----------------------------------------~~~~~~~~~-~v~~G~~v 116 (291)
T 2wim_A 79 ATDAKGQTQEATVVLEIYQKL-----------------------------------------TFREVVSPQ-EFKQGEDA 116 (291)
T ss_dssp EECSSSCEEEEEEEEEEECCC-----------------------------------------BCCSCCCSE-EEETTSCE
T ss_pred EecccCceEEEEEEEEecCCc-----------------------------------------ceEeCCCCh-hhcCCCCE
Confidence 999887653 45556664332 222222222 37799999
Q ss_pred EEEEEEeeCCCCCeEEEEEECCEEccCC--CcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeE--EEEEEEEEec
Q psy2166 222 HFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA--EISVNLECVD 297 (805)
Q Consensus 222 ~l~C~~~~~~~p~~~i~W~k~g~~l~~~--~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~--~~~~~l~v~~ 297 (805)
.|.|.+ .+.|.+.+.|++++..+... .++... .+ ..|.|.+++.+|+|.|+|.+.|..+.. ...+.+.+.
T Consensus 117 ~l~C~~--~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~--~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~- 190 (291)
T 2wim_A 117 EVVCRV--SSSPAPAVSWLYHNEEVTTISDNRFAML-AN--NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVN- 190 (291)
T ss_dssp EECCCC--BCSSCCEEEEECC----CBCCCSSEEEC-TT--SCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEE-
T ss_pred EEEEEE--ccCCCCEEEEEECCccccccCCceEEEc-cC--CCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEec-
Confidence 999988 68888999999999887642 333322 12 369999999999999999999876443 344555555
Q ss_pred cCCCCCCeEEecCCC-cccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCcEEEEEEcccCcCCceE
Q psy2166 298 KSKGQPPKFTSHIKS-LEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGE 376 (805)
Q Consensus 298 ~~~~~~p~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~ 376 (805)
.+|.+...... ...+.+|+.+.|.|.+. +.|.+.+.|+++|..+....++.+...+ ..|.|.++..+|+|.
T Consensus 191 ----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~--g~p~p~v~W~~~g~~~~~~~~~~~~~~~--~~L~i~~~~~~d~G~ 262 (291)
T 2wim_A 191 ----VPPAISMPQKSFNATAERGEEMTFSCRAS--GSPEPAISWFRNGKLIEENEKYILKGSN--TELTVRNIINSDGGP 262 (291)
T ss_dssp ----BCCCCBCSCSEEECCSSSCCEEEEECBCC--CBSCCEEEEEETTEECCCTTTEEECSTT--CEEEEESCCSTTCEE
T ss_pred ----cCCccccCcccccceecCCCeEEEEEEee--cCCCCeEEEEECCEECcCCccEEEcCCc--cEEEEeeCCcccCEE
Confidence 34444433321 22378899999999997 8899999999999999877776554333 369999999999999
Q ss_pred EEEEEEeCceeeEEEEEEEEEecc
Q psy2166 377 YVCRAWNKYGEDFTRATIKCFGKG 400 (805)
Q Consensus 377 Y~C~a~n~~g~~~~~~~l~V~~~~ 400 (805)
|+|.|.|..|....++.|.|..++
T Consensus 263 Y~C~a~N~~G~~~~~~~l~v~~~~ 286 (291)
T 2wim_A 263 YVCRATNKAGEDEKQAFLQVFVQH 286 (291)
T ss_dssp EEEEEEETTEEEEEEEEEEC----
T ss_pred EEEEEEECCCceeeeEEEEEEEec
Confidence 999999999999999999987654
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-31 Score=275.35 Aligned_cols=275 Identities=22% Similarity=0.331 Sum_probs=209.4
Q ss_pred CCceecccccccccCCCceEEEEEEEeeCCCC-CeEEEEEE-CCEEccCC-CcEEEEE-EcCeEEEEEcCCCCcccEEEE
Q psy2166 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ-TMTVEFLY-NGKPIEAS-HRIRTVH-AFGMVVLEILGTKIEDTGVYT 277 (805)
Q Consensus 202 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p-~~~i~W~k-~g~~l~~~-~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~ 277 (805)
|+.+...+.+. .+.+|+.++|.|.+ .+.| .+.+.|++ +|..+... .++.... ......|.|.+++.+|+|.|+
T Consensus 2 ~~~v~~~p~~~-~v~~G~~v~l~C~~--~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 78 (291)
T 1qz1_A 2 VLQVDIVPSQG-EISVGESKFFLCQV--AGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYK 78 (291)
T ss_dssp CCCEEEESSSE-EEETTCCEEEEEEE--SSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred CcceEecCCCc-eEeCCCeEEEEEEe--CCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEE
Confidence 46677776665 48899999999998 5655 68999999 88877643 4444433 345689999999999999999
Q ss_pred EEEEcCCee-EEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCC--ceE
Q psy2166 278 CRATNKWGQ-AEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN--RVK 354 (805)
Q Consensus 278 C~~~n~~g~-~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~--~~~ 354 (805)
|.+.|..|. .+..+.|.|. .+|.+...+.... +.+|+.+.|.|.+. +.|.+.+.|++++..+.... ++.
T Consensus 79 C~~~n~~g~~~~~~~~l~v~-----~~~~~~~~~~~~~-~~~g~~v~l~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~ 150 (291)
T 1qz1_A 79 CVVTAEDGTQSEATVNVKIF-----QKLMFKNAPTPQE-FKEGEDAVIVCDVV--SSLPPTIIWKHKGRDVILKKDVRFI 150 (291)
T ss_dssp EEEECTTSCEEEEEEEEEEE-----CCSEEEECCSSEE-EETTSCEEECCEEE--CSSCCEEEEEETTSCSSTTCCTTEE
T ss_pred EEEEcCCCCeeEEEEEEEee-----ccccccCCCCccc-ccCCCeEEEEEEec--cCCCCEEEEEECCEEcccCCCceEE
Confidence 999998853 4666777776 4666666665554 88999999999998 78889999999998876432 333
Q ss_pred EEEeCcEEEEEEcccCcCCceEEEEEEEeCceeeE--EEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCc
Q psy2166 355 MVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDF--TRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAP 432 (805)
Q Consensus 355 ~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~--~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 432 (805)
...+ + .|.|.++..+|+|.|+|.|.|..+... ..+.+.|..
T Consensus 151 ~~~~-~--~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~---------------------------------- 193 (291)
T 1qz1_A 151 VLSN-N--YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNV---------------------------------- 193 (291)
T ss_dssp ECTT-S--CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEE----------------------------------
T ss_pred EccC-C--cEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEec----------------------------------
Confidence 2222 2 599999999999999999999765433 334454432
Q ss_pred ccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCC-CcccccCC
Q psy2166 433 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQIS-DVTQLKEG 511 (805)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~~~~v~~G 511 (805)
+|.+..... ....+.+|
T Consensus 194 --------------------------------------------------------------~p~~~~~~~~~~~~~~~g 211 (291)
T 1qz1_A 194 --------------------------------------------------------------PPTVQARQSIVNATANLG 211 (291)
T ss_dssp --------------------------------------------------------------EEEEEESCSEEEEETTSC
T ss_pred --------------------------------------------------------------CCcccccccccccccccC
Confidence 233333221 12247899
Q ss_pred CeEEEEEEEeeCCCCCcEEEEEECCEEccCCC----ceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEE
Q psy2166 512 QSAHFEARLTPVTDPDLVVEWFYNGKKLPHGH----RYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587 (805)
Q Consensus 512 ~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 587 (805)
+.++|.|.+. |.|.|.+.|+++|..+..+. ++... .....|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 212 ~~v~l~C~~~--g~p~p~i~W~~~g~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 287 (291)
T 1qz1_A 212 QSVTLVCDAD--GFPEPTMSWTKDGEPIENEEEDDEKHIFS--DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 287 (291)
T ss_dssp CCEEEEEEEE--EESCCEEEEEETTEECCCC--CCSSEEEC--TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred ceEEEEEEEE--EeCCCcEEEEECCEECcCCCCCCcceEEc--CCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEEE
Confidence 9999999999 67888999999999997654 44333 2334799999999999999999999999999999999
Q ss_pred Eee
Q psy2166 588 CVS 590 (805)
Q Consensus 588 V~~ 590 (805)
|..
T Consensus 288 V~~ 290 (291)
T 1qz1_A 288 VFA 290 (291)
T ss_dssp EEC
T ss_pred EEc
Confidence 875
|
| >1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-31 Score=271.87 Aligned_cols=277 Identities=22% Similarity=0.285 Sum_probs=206.0
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCC-CceEEEEE-CCEecCCC-CceEEEe-cCcEEEEEEcccccCCCeEEE
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDP-NLKIEWIF-NGKPLELG-SRFKTTA-DFGFVTLDLTEVYDRDQGIYT 140 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p-~~~v~W~k-~g~~i~~~-~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~ 140 (805)
+|.+...+. +..+.+|+.++|.|.+. +.+ .+.|.|+| ||..+... .++.+.. ++...+|.|.+++.+|+|.|+
T Consensus 2 ~~~v~~~p~-~~~v~~G~~v~l~C~~~--~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 78 (291)
T 1qz1_A 2 VLQVDIVPS-QGEISVGESKFFLCQVA--GDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYK 78 (291)
T ss_dssp CCCEEEESS-SEEEETTCCEEEEEEES--SCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred CcceEecCC-CceEeCCCeEEEEEEeC--CCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEE
Confidence 355555554 67899999999999998 454 68999999 88877643 4565543 446679999999999999999
Q ss_pred EEEEeCCee-EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCc
Q psy2166 141 CRAWNLAGE-TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGE 219 (805)
Q Consensus 141 C~a~n~~g~-~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~ 219 (805)
|.+.|..|. ......|.|..+ |.+...+... .+.+|+
T Consensus 79 C~~~n~~g~~~~~~~~l~v~~~-----------------------------------------~~~~~~~~~~-~~~~g~ 116 (291)
T 1qz1_A 79 CVVTAEDGTQSEATVNVKIFQK-----------------------------------------LMFKNAPTPQ-EFKEGE 116 (291)
T ss_dssp EEEECTTSCEEEEEEEEEEECC-----------------------------------------SEEEECCSSE-EEETTS
T ss_pred EEEEcCCCCeeEEEEEEEeecc-----------------------------------------ccccCCCCcc-cccCCC
Confidence 999998754 345566666532 3333333333 478999
Q ss_pred eEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCee--EEEEEEEEEec
Q psy2166 220 IAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ--AEISVNLECVD 297 (805)
Q Consensus 220 ~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~--~~~~~~l~v~~ 297 (805)
.+.|.|.+ .+.|.+.+.|+++|..+........... ....|.|.+++.+|+|.|+|.+.|..+. ....+.+.|.
T Consensus 117 ~v~l~C~~--~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~- 192 (291)
T 1qz1_A 117 DAVIVCDV--VSSLPPTIIWKHKGRDVILKKDVRFIVL-SNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVN- 192 (291)
T ss_dssp CEEECCEE--ECSSCCEEEEEETTSCSSTTCCTTEEEC-TTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEE-
T ss_pred eEEEEEEe--ccCCCCEEEEEECCEEcccCCCceEEEc-cCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEe-
Confidence 99999998 5778899999999988764322111111 1236999999999999999999986533 2345556555
Q ss_pred cCCCCCCeEEecCCC-cccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCC----ceEEEEeCcEEEEEEcccCcC
Q psy2166 298 KSKGQPPKFTSHIKS-LEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN----RVKMVSDFGFVVMDIAYVQSH 372 (805)
Q Consensus 298 ~~~~~~p~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~----~~~~~~~~~~~~l~i~~v~~~ 372 (805)
.+|.+...... ...+.+|+.++|.|.+. +.|.+.+.|+++|..+.... ++.+. .....|.|.++..+
T Consensus 193 ----~~p~~~~~~~~~~~~~~~g~~v~l~C~~~--g~p~p~i~W~~~g~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~ 264 (291)
T 1qz1_A 193 ----VPPTVQARQSIVNATANLGQSVTLVCDAD--GFPEPTMSWTKDGEPIENEEEDDEKHIFS--DDSSELTIRNVDKN 264 (291)
T ss_dssp ----EEEEEEESCSEEEEETTSCCCEEEEEEEE--EESCCEEEEEETTEECCCC--CCSSEEEC--TTSCEEEECSCCGG
T ss_pred ----cCCcccccccccccccccCceEEEEEEEE--EeCCCcEEEEECCEECcCCCCCCcceEEc--CCCcEEEEEecChh
Confidence 34555543322 22378899999999998 78889999999999987654 33332 22347999999999
Q ss_pred CceEEEEEEEeCceeeEEEEEEEEEe
Q psy2166 373 DSGEYVCRAWNKYGEDFTRATIKCFG 398 (805)
Q Consensus 373 d~G~Y~C~a~n~~g~~~~~~~l~V~~ 398 (805)
|+|.|+|.|.|..|.....+.|.|.+
T Consensus 265 d~G~Y~C~a~N~~G~~~~~~~l~V~~ 290 (291)
T 1qz1_A 265 DEAEYVCIAENKAGEQDASIHLKVFA 290 (291)
T ss_dssp GCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred cCEEEEEEEEeCCCceEEEEEEEEEc
Confidence 99999999999999999999998864
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=277.17 Aligned_cols=283 Identities=16% Similarity=0.209 Sum_probs=212.3
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTST 154 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~ 154 (805)
.+.|.+|+.++|.|.+. .+.|.+.|+|+|||..+..+.++.+..+++..+|.|.+++.+|+|.|+|.|.|..|... +.
T Consensus 10 ~~~v~eg~~v~l~~~~~-~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~ 87 (312)
T 2y23_A 10 VVNVDDDGVISLNFECD-KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SY 87 (312)
T ss_dssp EEEECTTCCEEEEEECS-SCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EE
T ss_pred eEEEecCCeEEEEEEEe-CCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EE
Confidence 46788999999999997 46899999999999999999999999888888999999999999999999999887544 44
Q ss_pred EEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeC-CCC
Q psy2166 155 TIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPV-GDQ 233 (805)
Q Consensus 155 ~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~-~~p 233 (805)
.+.|..... +..+... ..+|.+...+.....+.+|+.+.|.|.+ . +.|
T Consensus 88 ~l~v~~~~~----------------~~~~~~~-------------~~~p~~~~~~~~~~~v~~G~~v~l~C~~--~~~~p 136 (312)
T 2y23_A 88 LIDEEELKR----------------LLALSHE-------------HKFPTVPVKSELAVEILEKGQVRFWMQA--EKLSG 136 (312)
T ss_dssp EECHHHHHH----------------HHHHHHH-------------HHSCBCCEEEEEEEEECSSSCEEEEEEE--SCCCS
T ss_pred EEEEeeeee----------------eeccccc-------------CCCCccccccCCceEEeeCCCEEEEEEE--EeCCC
Confidence 454432110 0000000 0134333333323358899999999998 5 788
Q ss_pred CeEEEEEECCEEccCCCcEEEEEE--cCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEec--------------
Q psy2166 234 TMTVEFLYNGKPIEASHRIRTVHA--FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD-------------- 297 (805)
Q Consensus 234 ~~~i~W~k~g~~l~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~-------------- 297 (805)
.+.+.|+++|..+....++.+... .+...|.|.+++.+|+|.|+|.+.+..........+....
T Consensus 137 ~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (312)
T 2y23_A 137 NAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQE 216 (312)
T ss_dssp SCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccc
Confidence 999999999999988877766554 4567899999999999999999987655544444331000
Q ss_pred cCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCc-EEEEEECCEEccCCCceEEEEeCcEEEEEEcccCcCCceE
Q psy2166 298 KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPEL-KVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGE 376 (805)
Q Consensus 298 ~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~ 376 (805)
.....+|.+..... ..+.+|+.+.|.|.+. +.|.+ .+.|+++|..+....++.+. .+...|.|.++..+|+|.
T Consensus 217 ~~~~~~p~~~~~~~--~~v~~G~~~~l~C~~~--~~p~~~~v~W~~~g~~~~~~~~~~~~--~~~~~L~I~~v~~~d~G~ 290 (312)
T 2y23_A 217 WIRKQGPHFVEYLS--WEVTGECNVLLKCKVA--NIKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGI 290 (312)
T ss_dssp HHHHHSSEEEEEEE--EEEETTTEEEEEEEEE--SCCSSCEEEEEETTEEEEEECCC------CEEEEEECSCSGGGCEE
T ss_pred hhhccCCceeecce--EEEeCCCEEEEEEEEc--CCCCCCEEEEeeCCEECCCCCcEEEE--CCEEEEEECcCCHHHCEE
Confidence 00002355443332 2378999999999998 78877 99999999999866666554 345689999999999999
Q ss_pred EEEEEEeCceeeEEEEEEEE
Q psy2166 377 YVCRAWNKYGEDFTRATIKC 396 (805)
Q Consensus 377 Y~C~a~n~~g~~~~~~~l~V 396 (805)
|+|.|.|..|.....+.|.+
T Consensus 291 Y~C~a~N~~G~~~~~~~l~i 310 (312)
T 2y23_A 291 YEVILKDDRGKDKSRLKLVD 310 (312)
T ss_dssp EEEEEESTTCCEEEEEEECS
T ss_pred EEEEEEcCCCceeeeeEEEe
Confidence 99999999999999888765
|
| >2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-31 Score=278.19 Aligned_cols=290 Identities=16% Similarity=0.220 Sum_probs=211.8
Q ss_pred ccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEE
Q psy2166 214 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l 293 (805)
.+.+|+.+.|.|.+. .+.|.+.+.|+|+|..+....++.+...++...|.|.+++.+|+|.|+|.+.|..|... +..+
T Consensus 12 ~v~eg~~v~l~~~~~-~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~l 89 (312)
T 2y23_A 12 NVDDDGVISLNFECD-KMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYLI 89 (312)
T ss_dssp EECTTCCEEEEEECS-SCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEEE
T ss_pred EEecCCeEEEEEEEe-CCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEEE
Confidence 478999999999986 67899999999999999988888888777788999999999999999999999887544 4555
Q ss_pred EEeccCC-------CCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEe--CcEEEE
Q psy2166 294 ECVDKSK-------GQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD--FGFVVM 364 (805)
Q Consensus 294 ~v~~~~~-------~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~--~~~~~l 364 (805)
.|..... ..+|.+.........+.+|+.+.|.|.+.+ +.|.+.+.|++++..+....++.+..+ .+...|
T Consensus 90 ~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L 168 (312)
T 2y23_A 90 DEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEK-LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEM 168 (312)
T ss_dssp CHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESC-CCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEE
T ss_pred EEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEe-CCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEE
Confidence 5432000 003333332221334889999999999962 678999999999999988777777654 566789
Q ss_pred EEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeec
Q psy2166 365 DIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQIS 444 (805)
Q Consensus 365 ~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (805)
.|.++..+|+|.|+|.|.+..+.. ...+.+.... +...+ ....+...
T Consensus 169 ~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~~~~~~--~~~~~------~~~~~~~~----------------------- 215 (312)
T 2y23_A 169 FMEKLQDEDEGTYTFQLQDGKATN--HSTVVLVGDV--FKKLQ------KEAEFQRQ----------------------- 215 (312)
T ss_dssp EESCCCGGGCEEEEEEEESSSCEE--EEEEEECTHH--HHHHH------HHHHHHHH-----------------------
T ss_pred EEccCCcccCEeEEEEEEeCCceE--EEEEEEcchh--hhhhc------cccccccc-----------------------
Confidence 999999999999999998654433 3333332110 00000 00000000
Q ss_pred ceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCC
Q psy2166 445 DVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT 524 (805)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g 524 (805)
......+|.|...+. ..+.+|+.++|.|.+. +
T Consensus 216 --------------------------------------------~~~~~~~p~~~~~~~--~~v~~G~~~~l~C~~~--~ 247 (312)
T 2y23_A 216 --------------------------------------------EWIRKQGPHFVEYLS--WEVTGECNVLLKCKVA--N 247 (312)
T ss_dssp --------------------------------------------HHHHHHSSEEEEEEE--EEEETTTEEEEEEEEE--S
T ss_pred --------------------------------------------chhhccCCceeecce--EEEeCCCEEEEEEEEc--C
Confidence 000123466654444 3488999999999999 6
Q ss_pred CCCc-EEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEe
Q psy2166 525 DPDL-VVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 525 ~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
.|.+ .++|+|+|..+..+.++.+. ++...|.|.+++.+|+|.|+|.|.|..|....++.|+|.
T Consensus 248 ~p~~~~v~W~~~g~~~~~~~~~~~~--~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~i~ 311 (312)
T 2y23_A 248 IKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 311 (312)
T ss_dssp CCSSCEEEEEETTEEEEEECCC------CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEEECSC
T ss_pred CCCCCEEEEeeCCEECCCCCcEEEE--CCEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeEEEec
Confidence 6777 99999999999866666554 445689999999999999999999999999999988764
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-35 Score=317.38 Aligned_cols=372 Identities=12% Similarity=0.088 Sum_probs=235.0
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEECC--Eec-----------------CCCCceEEEec--CcEEEEEEccc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG--KPL-----------------ELGSRFKTTAD--FGFVTLDLTEV 131 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g--~~i-----------------~~~~~~~~~~~--~~~~~L~I~~~ 131 (805)
+..+.+.+|+.++|.|.+.+...+.+.|.|+|++ ..+ ...+|+.+..+ ++..+|.|.++
T Consensus 6 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (434)
T 1igy_B 6 SGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSL 85 (434)
T ss_dssp CCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSB
T ss_pred CCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCC
Confidence 3467899999999999998421236789999963 221 01347776554 34568999999
Q ss_pred ccCCCeEEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccccc
Q psy2166 132 YDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQH 211 (805)
Q Consensus 132 ~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 211 (805)
+.+|+|.|+|.+.|..+.......|.|.... ..+|.+......
T Consensus 86 ~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~-------------------------------------~~~P~i~~~~~~ 128 (434)
T 1igy_B 86 TSDDSAVYYCVREGEVPYWGQGTTVTVSSAK-------------------------------------TTPPSVYPLAPG 128 (434)
T ss_dssp CGGGCSEECCCCSSSSCCCCCCEECEECCSC-------------------------------------CBCCCEEEECCC
T ss_pred ChHHCEEEEEEEEccccccCCceEEEEccCC-------------------------------------CCCCeEEEcCCc
Confidence 9999999999998864433344566664311 023433322222
Q ss_pred ccccCCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCCCcEEEEEEc---CeEEEEEcCCCCcccEEEEEEEEcCCeeE
Q psy2166 212 LSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRIRTVHAF---GMVVLEILGTKIEDTGVYTCRATNKWGQA 287 (805)
Q Consensus 212 ~~~v~~g~~~~l~C~~~~~~~p~~-~i~W~k~g~~l~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~ 287 (805)
. .+.+|+.++|.|.+.. ..|.+ .|.|+|+|..+...........+ ....|.|.+++.+| |.|+|.|.|..+..
T Consensus 129 ~-~~~~G~~v~L~C~~~g-~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~ 205 (434)
T 1igy_B 129 S-AAQTNSMVTLGCLVKG-YFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASST 205 (434)
T ss_dssp C-CCCCTTEEEEEEEEEE-EBSSCCEEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTC
T ss_pred c-ccCCCCcEEEEEEEee-ecCCCeEEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCc
Confidence 2 2579999999999852 23665 99999998753210000000001 12469999999889 99999999998875
Q ss_pred EEEEEEEEecc-------CCCCCCeEEecCCCcc-cccCCCeEEEEEEEeecCCC----CcEEEEEECCEEccCCCceEE
Q psy2166 288 EISVNLECVDK-------SKGQPPKFTSHIKSLE-GLKDGDSAHFECTLTPVNDP----ELKVEWFHNGKPIFHKNRVKM 355 (805)
Q Consensus 288 ~~~~~l~v~~~-------~~~~~p~~~~~~~~~~-~~~~g~~~~l~C~~~~~~~p----~~~v~W~~~g~~l~~~~~~~~ 355 (805)
.....+.+... .....|.+...+.... .+.+|+.++|.|.+. +.+ .+.|.|+|++..+........
T Consensus 206 ~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~--g~~p~P~~~~i~W~k~~~~~~~~~~~~~ 283 (434)
T 1igy_B 206 KVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVV--DISKDDPEVQFSWFVDNVEVHTAQTQPR 283 (434)
T ss_dssp CEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEEC--CCCSSCCCCCBCBBSSSCCBCCCSCCCC
T ss_pred cceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEe--ccccCCCCeEEEEEeCCcccCCcccCcc
Confidence 44444432110 0001133333332222 278899999999998 442 468999999987653211110
Q ss_pred --EEeC---cEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCcccc
Q psy2166 356 --VSDF---GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQA 430 (805)
Q Consensus 356 --~~~~---~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 430 (805)
..++ ....|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus 284 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~---------------------------------- 329 (434)
T 1igy_B 284 EEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISK---------------------------------- 329 (434)
T ss_dssp CCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCC----------------------------------
T ss_pred eeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEec----------------------------------
Confidence 0111 1235889999999999999999998875422111110
Q ss_pred CcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccC
Q psy2166 431 APVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKE 510 (805)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~ 510 (805)
...+..+|.+...+.... ..+
T Consensus 330 ----------------------------------------------------------~~~~~~~P~v~~~~~~~~-~~~ 350 (434)
T 1igy_B 330 ----------------------------------------------------------TKGKPRAPQVYTIPPPKE-QMA 350 (434)
T ss_dssp ----------------------------------------------------------CCSCCBCCCCEEECCCSS-SSS
T ss_pred ----------------------------------------------------------cCCCCcCCEEEEECCCHH-Hhc
Confidence 112346777766554433 446
Q ss_pred CCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEE--EeeCC---EEEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 511 GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT--FHDFG---IVILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 511 G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~--~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
|+.++|.|.+.+..++.+.|+|+|||+++........ ..++. .+.|.|.....+|+|.|+|.|.|....
T Consensus 351 ~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 424 (434)
T 1igy_B 351 KDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 424 (434)
T ss_dssp SSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred CCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCCC
Confidence 7789999999963233569999999998854321111 11222 235788877778899999999998654
|
| >1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.4e-31 Score=292.72 Aligned_cols=381 Identities=14% Similarity=0.209 Sum_probs=227.7
Q ss_pred ccCCCceEEEEEEEeeCCCC--CeEEEEEEC--CEE---c--------------cCCCcEEEEEE--cCeEEEEEcCCCC
Q psy2166 214 NLSEGEIAHFEASLIPVGDQ--TMTVEFLYN--GKP---I--------------EASHRIRTVHA--FGMVVLEILGTKI 270 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~p--~~~i~W~k~--g~~---l--------------~~~~~~~~~~~--~~~~~L~i~~~~~ 270 (805)
.+.+|+.++|.|.+. +.+ .+.+.|||+ |.. + ....++..... .+...|.|.+++.
T Consensus 11 ~v~~G~~v~L~C~~~--~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 88 (457)
T 1hzh_H 11 VKKPGASVKVSCQAS--GYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRS 88 (457)
T ss_dssp EECTTCCEEECEEEE--SSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred EEcCCCCEEEEEEec--CccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCCCc
Confidence 478999999999984 444 678999984 321 1 01245554443 3567899999999
Q ss_pred cccEEEEEEEEcCCe------------eEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCC-cE
Q psy2166 271 EDTGVYTCRATNKWG------------QAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE-LK 337 (805)
Q Consensus 271 ~d~G~Y~C~~~n~~g------------~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~-~~ 337 (805)
+|+|.|+|.+.|..+ .....+.|.|..... .+|.+........ +.+|+.++|.|.+.+ ..|. +.
T Consensus 89 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~-~~P~i~~~~~~~~-~~~g~~v~L~C~~~g-~~P~~~~ 165 (457)
T 1hzh_H 89 ADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSAST-KGPSVFPLAPSSK-STSGGTAALGCLVKD-YFPEPVT 165 (457)
T ss_dssp GGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCC-BCCEEEEECCCSC-CCTTCCEEEEEEEES-BBSCCCE
T ss_pred ccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCC-CCCeEEecCcccc-ccCCCcEEEEEEEeE-EeCCCeE
Confidence 999999999998764 122345566654211 2455544333333 678999999999983 3364 89
Q ss_pred EEEEECCEEccCCCceEEEEeCc----EEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHH
Q psy2166 338 VEWFHNGKPIFHKNRVKMVSDFG----FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLA 413 (805)
Q Consensus 338 v~W~~~g~~l~~~~~~~~~~~~~----~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~ 413 (805)
|.|++++..+...........++ ...|.|.++..+| |.|+|.|.|..+.......+.+...+..
T Consensus 166 v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~----------- 233 (457)
T 1hzh_H 166 VSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKT----------- 233 (457)
T ss_dssp EEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSS-----------
T ss_pred EEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCcc-----------
Confidence 99999997543111001111111 2368999999999 9999999998876554444433211100
Q ss_pred HHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCC
Q psy2166 414 RIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVA 493 (805)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~ 493 (805)
|.|.+ .....+.
T Consensus 234 -------------------------------------------------------~~~~~-------------~~~~~~~ 245 (457)
T 1hzh_H 234 -------------------------------------------------------HTCPP-------------CPAPELL 245 (457)
T ss_dssp -------------------------------------------------------CSCCS-------------CCCCCCS
T ss_pred -------------------------------------------------------cccCC-------------CCCcccc
Confidence 00000 0001123
Q ss_pred CCCceEecCCCcc-cccCCCeEEEEEEEeeCCCCC----cEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEE
Q psy2166 494 EAPKFITQISDVT-QLKEGQSAHFEARLTPVTDPD----LVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 568 (805)
Q Consensus 494 ~~P~~~~~~~~~~-~v~~G~~v~L~C~v~~~g~p~----~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 568 (805)
.+|.+....+... .+.+|++++|.|.+. |.|+ +.|+|+|+|..+....... .. ..+.|.
T Consensus 246 ~~p~v~~~~p~~~~~~~~G~~v~L~C~~~--g~~p~p~~~~i~W~k~~~~~~~~~~~~----------~~----~~~~g~ 309 (457)
T 1hzh_H 246 GGPSVFLFPPKPKDTLMISRTPEVTCVVV--DVSHEDPEVKFNWYVDGVEVHNAKTKP----------RE----EQYNST 309 (457)
T ss_dssp SSCEEEEECCCHHHHHCTTSCCCEEEEEE--CCCTTCCCCEEEEEETTEEECCCEEEE----------EE----ECTTSC
T ss_pred CCceEEeECcCchhhcccCCceEEEEEEE--cccCCCCceEEEEEeCCcccccccccc----------ce----ecCCCc
Confidence 4566533333332 267899999999999 4433 3999999999875431110 00 012232
Q ss_pred EEEEEEcCCcceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEe
Q psy2166 569 YECRATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATN 648 (805)
Q Consensus 569 Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 648 (805)
|.... . |.|.....+|+|.|+|.|.|
T Consensus 310 ~~~~~-----------~-------------------------------------------l~i~~~d~~d~G~Y~C~a~n 335 (457)
T 1hzh_H 310 YRVVS-----------V-------------------------------------------LTVLHQDWLNGKEYKCKVSN 335 (457)
T ss_dssp EEEEE-----------E-------------------------------------------ECCCHHHHHHTCCEEEEEEC
T ss_pred EEEEE-----------E-------------------------------------------EEECHHHccCCCcEEEEEeC
Confidence 32211 0 22222233457777777777
Q ss_pred CCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCC--eEE
Q psy2166 649 KYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQT--MTV 726 (805)
Q Consensus 649 ~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~--~~v 726 (805)
..+.......+.+.. ....+|.+...+.....+..|+ +.|.|.+. |.|+ +.|
T Consensus 336 ~~~~~~~~~~v~~~~-----------------------~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~--g~~p~~~~v 389 (457)
T 1hzh_H 336 KALPAPIEKTISKAK-----------------------GQPREPQVYTLPPSRDELTKNQ-VSLTCLVK--GFYPSDIAV 389 (457)
T ss_dssp TTSSSCEEEEECCCC-----------------------CCCBCCEEEEECCCGGGGGSSE-EEEEEEEE--EEBSSCCEE
T ss_pred CCCCCcceEEEEccc-----------------------CCCCCCeEEEECCCccccCCCc-EEEEEEEE--eEECCCCEE
Confidence 655443333332200 0014677666554431455555 99999998 6543 499
Q ss_pred EEEECCEEccCCCCeEE-EeeCc----EEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 727 EFLYNGKPIEASHRIRT-VHAFG----MVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 727 ~W~~~g~~l~~~~~~~~-~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
+|+|||+.+........ ...++ ...|.|.....+|+|.|+|.|.|..-.
T Consensus 390 ~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 443 (457)
T 1hzh_H 390 EWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 443 (457)
T ss_dssp EEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred EEEECCEECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCCC
Confidence 99999999864422111 12222 135777777678999999999998643
|
| >1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=277.60 Aligned_cols=384 Identities=13% Similarity=0.128 Sum_probs=230.7
Q ss_pred ccCCCceEEEEEEEeeCCCCCeEEEEEEC--CEEcc-----------------CCCcEEEEEE--cCeEEEEEcCCCCcc
Q psy2166 214 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--GKPIE-----------------ASHRIRTVHA--FGMVVLEILGTKIED 272 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~p~~~i~W~k~--g~~l~-----------------~~~~~~~~~~--~~~~~L~i~~~~~~d 272 (805)
.+.+|+.++|.|.+.....+.+.+.|||+ |..+. ...++..... .+...|.|.+++.+|
T Consensus 12 ~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D 91 (475)
T 1iga_A 12 VKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPED 91 (475)
T ss_pred EEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECCCChhh
Confidence 47899999999998421123578999985 22110 1234443332 345789999999999
Q ss_pred cEEEEEEEEcCCee------EEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCC-c-EEEEEECC
Q psy2166 273 TGVYTCRATNKWGQ------AEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE-L-KVEWFHNG 344 (805)
Q Consensus 273 ~G~Y~C~~~n~~g~------~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~-~-~v~W~~~g 344 (805)
+|.|.|.+.+..+. ....+.|.|..... .+|.+....... +.+|+.++|.|.+.| ..|. + .|.|++++
T Consensus 92 ~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~-~~P~i~~~~~~~--~~~g~~v~L~C~~~g-~~P~~p~~v~W~~~~ 167 (475)
T 1iga_A 92 TAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASP-TSPKVFPLSLCS--TQPDGNVVIACLVQG-FFPQEPLSVTWSESG 167 (475)
T ss_pred CEEEEEEEeccCCCccceeeecCceEEEeccCCC-cCCeEEecCccc--cCCCCeEEEEEEEee-ecCCCceEEEEcCCC
Confidence 99999999987651 22345666653211 244444333222 468999999999983 3355 4 99999988
Q ss_pred EEccCCCceEEE-EeCc----EEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhh
Q psy2166 345 KPIFHKNRVKMV-SDFG----FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELE 419 (805)
Q Consensus 345 ~~l~~~~~~~~~-~~~~----~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~ 419 (805)
............ ..++ ...|.|..+..+|+|.|+|.|.|..+. .....+.+..+.. +
T Consensus 168 ~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~-~~~~~v~l~V~~~-------~---------- 229 (475)
T 1iga_A 168 QGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP-SQDVTVPCPVPST-------P---------- 229 (475)
T ss_pred cccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCC-ceeeeEecccccC-------c----------
Confidence 543211000011 0111 125888888889999999999998863 2223332211000 0
Q ss_pred hccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceE
Q psy2166 420 NAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFI 499 (805)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~ 499 (805)
....+.|... .... ..+|.+.
T Consensus 230 ---------------------------------------------~~~~~~~~~~-------------~~~~-~~~p~v~ 250 (475)
T 1iga_A 230 ---------------------------------------------PTPSPSTPPT-------------PSPS-CCHPRLS 250 (475)
T ss_pred ---------------------------------------------cccccccccc-------------CCCC-CCCcEEE
Confidence 0000111000 0000 1345554
Q ss_pred ecCCCcccccCCCeEEEEEEEeeCCCC--CcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCC
Q psy2166 500 TQISDVTQLKEGQSAHFEARLTPVTDP--DLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKY 577 (805)
Q Consensus 500 ~~~~~~~~v~~G~~v~L~C~v~~~g~p--~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 577 (805)
...+....+.+|+.++|.|.+.+. .| .+.|+| ++..+...... . ....+.|
T Consensus 251 ~~~p~~~~~~~G~~v~L~C~~~g~-~p~~~~~i~W--~~~~~~~~~~~-------------~-~~~~~~g---------- 303 (475)
T 1iga_A 251 LHRPALEDLLLGSEANLTCTLTGL-RDASGVTFTW--TPSSGKSAVQG-------------P-PERDLCG---------- 303 (475)
T ss_pred EcCCChHHhccCCceEEEEEEEcc-cCCCceEEEE--CCCCcCCcccc-------------C-ceECCCC----------
Confidence 433333336899999999999942 23 279999 44333211000 0 0000011
Q ss_pred cceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEE
Q psy2166 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 657 (805)
Q Consensus 578 g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 657 (805)
.+. ....|.|.++..+|+|.|+|.|.|..|......
T Consensus 304 ---------------------------------------~~~-----~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~ 339 (475)
T 1iga_A 304 ---------------------------------------CYS-----VSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTA 339 (475)
T ss_pred ---------------------------------------CEE-----EEEEEEEchHHhccCCcEEEEEEcCCCCCceEE
Confidence 111 112388899999999999999999988765555
Q ss_pred EEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCC-C-CeEEEEEECCEEc
Q psy2166 658 SLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGD-Q-TMTVEFLYNGKPI 735 (805)
Q Consensus 658 ~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~-p-~~~v~W~~~g~~l 735 (805)
.|.+.. ...+|.+...+.....+.+|+.+.|.|.+. |. | .+.|+|+|||+.+
T Consensus 340 ~v~~~~------------------------~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~--g~~P~~~~v~W~k~g~~l 393 (475)
T 1iga_A 340 TLSKSG------------------------NTFRPEVHLLPPPSEELALNELVTLTCLAR--GFSPKDVLVRWLQGSQEL 393 (475)
T ss_pred EeecCC------------------------CCCCCeEEEECCChHHhccCCceEEEEEEe--eeECCCCEEEEEECCEEC
Confidence 553311 015677766544431578999999999998 65 3 3599999999998
Q ss_pred cCCCCeE---EEe---eCc----EEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 736 EASHRIR---TVH---AFG----MVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 736 ~~~~~~~---~~~---~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
..+.... ... .++ ...|.|.....+|+|.|+|.|.|....
T Consensus 394 ~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~ 443 (475)
T 1iga_A 394 PREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP 443 (475)
T ss_pred CCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence 7663111 111 222 246888888889999999999998754
|
| >1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-29 Score=274.82 Aligned_cols=377 Identities=14% Similarity=0.117 Sum_probs=231.0
Q ss_pred CCCceecCCCcEEEEEEEecCCCCC--ceEEEEEC--CEec---C-------------CCCceEEEec--CcEEEEEEcc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPN--LKIEWIFN--GKPL---E-------------LGSRFKTTAD--FGFVTLDLTE 130 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~--~~v~W~k~--g~~i---~-------------~~~~~~~~~~--~~~~~L~I~~ 130 (805)
+..+.+.+|+.++|.|.+.+..... ..|.|||. |..+ . ..+|+.+..+ ++.++|.|.+
T Consensus 7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 86 (512)
T 1zvo_C 7 SGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRS 86 (512)
T ss_pred CCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEECc
Confidence 4478899999999999998321112 68999985 3211 0 1357777654 3467999999
Q ss_pred cccCCCeEEEEEEEeCCe-----------e--EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCC
Q psy2166 131 VYDRDQGIYTCRAWNLAG-----------E--TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDS 197 (805)
Q Consensus 131 ~~~~D~G~Y~C~a~n~~g-----------~--~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (805)
++.+|+|.|+|.+.+..+ . ....+.|.|...+
T Consensus 87 v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~----------------------------------- 131 (512)
T 1zvo_C 87 MSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAP----------------------------------- 131 (512)
T ss_pred CCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccC-----------------------------------
Confidence 999999999999987642 1 1123456664311
Q ss_pred CCCCCCceecccccccccCCCceEEEEEEEeeCCCCC-eEEEEEECCEEccCCCcEEEEEEcC----eEEEEEcCCCCcc
Q psy2166 198 EDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQT-MTVEFLYNGKPIEASHRIRTVHAFG----MVVLEILGTKIED 272 (805)
Q Consensus 198 ~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~-~~i~W~k~g~~l~~~~~~~~~~~~~----~~~L~i~~~~~~d 272 (805)
..+|.+...........+|+.++|.|.+. ...|. +.|.|++++..............++ .+.|.|.....+
T Consensus 132 --~~~P~i~~~~~~~~~~~~~~~v~L~C~~~-g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~- 207 (512)
T 1zvo_C 132 --TKAPDVFPIISGCRHPKDNSPVVLACLIT-GYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR- 207 (512)
T ss_pred --CcCCeEEeccCCcccccCCCeEEEEEEEE-eeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-
Confidence 02344332111100012468999999985 23365 4999999764321000000111112 246889887777
Q ss_pred cEEEEEEEEcCCeeEEEEE-----------EEEEeccC------------------------------------------
Q psy2166 273 TGVYTCRATNKWGQAEISV-----------NLECVDKS------------------------------------------ 299 (805)
Q Consensus 273 ~G~Y~C~~~n~~g~~~~~~-----------~l~v~~~~------------------------------------------ 299 (805)
.|.|+|.|.|..+...... .+.+...+
T Consensus 208 ~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~ 287 (512)
T 1zvo_C 208 QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKT 287 (512)
T ss_pred CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCccc
Confidence 9999999999887665443 23332111
Q ss_pred -----CCCCCeEEecCCCcccccCCCeEEEEEEEeecCCC-CcEEEEEECCEEccCCCc--eEEEEeCc----EEEEEEc
Q psy2166 300 -----KGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDP-ELKVEWFHNGKPIFHKNR--VKMVSDFG----FVVMDIA 367 (805)
Q Consensus 300 -----~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p-~~~v~W~~~g~~l~~~~~--~~~~~~~~----~~~l~i~ 367 (805)
...+|.+...+.....+.+|+.++|.|.+.+. .| ...|+|+++|..+..... ......++ ...|.|.
T Consensus 288 ~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v~g~-~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~ 366 (512)
T 1zvo_C 288 PECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGS-DLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLP 366 (512)
T ss_pred ccCCCCCCCCEEEEECCChHHhccCCceEEEEEEece-ECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEc
Confidence 01234443333332236689999999999842 34 459999999998652111 01111122 2358999
Q ss_pred ccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeeccee
Q psy2166 368 YVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVT 447 (805)
Q Consensus 368 ~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (805)
.+..+|.|.|+|.|.|..+... ...+....
T Consensus 367 ~~~~~d~g~y~C~a~n~~~~~~-~~~~~~~~------------------------------------------------- 396 (512)
T 1zvo_C 367 RSLWNAGTSVTCTLNHPSLPPQ-RLMALREP------------------------------------------------- 396 (512)
T ss_pred hHHhcCCCeEEEEEEeCCCCCC-ceeEEeec-------------------------------------------------
Confidence 9999999999999999877543 22222100
Q ss_pred eecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEE-EEEEEeeCCCC
Q psy2166 448 QLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAH-FEARLTPVTDP 526 (805)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~-L~C~v~~~g~p 526 (805)
......+|.+....+.. .|+.+. |.|.+.++.++
T Consensus 397 -----------------------------------------~~~~~~~p~v~~~~~~~----~~~~~~~L~C~~~g~~P~ 431 (512)
T 1zvo_C 397 -----------------------------------------AAQAPVKLSLNLLASSD----PPEAASWLLCEVSGFSPP 431 (512)
T ss_pred -----------------------------------------CCCCCCCCEEEEEccCc----CCCCceEEEEEEeeeCCC
Confidence 00002456655543332 789999 99999964344
Q ss_pred CcEEEEEECCEEccCCCce--E-EEeeCC-----EEEEEEccCCCCCCEEEEEEEEcCCcceEEEE
Q psy2166 527 DLVVEWFYNGKKLPHGHRY--R-TFHDFG-----IVILDILYCYEENSGVYECRATNKYGSDVTKA 584 (805)
Q Consensus 527 ~~~v~W~~~g~~l~~~~~~--~-~~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 584 (805)
...++|+|||+++..+... . ....++ .+.|.|.....+|.|.|+|.|.|........+
T Consensus 432 ~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~ 497 (512)
T 1zvo_C 432 NILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNA 497 (512)
T ss_pred CcEEEEEECCeECcCccccccceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCCceEE
Confidence 5689999999999754211 1 122222 24577877777789999999999876644333
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=267.96 Aligned_cols=250 Identities=16% Similarity=0.172 Sum_probs=190.7
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEE
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECR 572 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 572 (805)
..+|.|...+... .+.+|++++|.|.+. + .++|+|+|..+ ......+ ..|.|.+++.+|+|.|+|.
T Consensus 10 ~~~P~i~~~~~~~-~v~~G~~v~l~C~~~--~----~i~W~~~~~~~-----~~~~~~~--~~L~i~~~~~~d~G~Y~C~ 75 (290)
T 2o26_X 10 PSPPSIHPAQSEL-IVEAGDTLSLTCIDP--D----FVRWTFKTYFN-----EMVENKK--NEWIQEKAEATRTGTYTCS 75 (290)
T ss_dssp --CCEESSCSSEE-EEETTSCEEEEEECT--T----EEEEEEECSSS-----CEEEECS--SEEEETTCCGGGCEEEEEE
T ss_pred CCCCEEeCCCCeE-EEcCCCcEEEEECCC--C----cEEEecCCcce-----eeecCCC--ceEEEeccCHHhCeEEEEE
Confidence 4677777544444 489999999999997 5 89999999877 1112222 5799999999999999999
Q ss_pred EEcCCcceEEEEEEEEeeeeee---------------eecC----CC-CeEEE-EECCEEccCCCceEEEeeCCEEEEEe
Q psy2166 573 ATNKYGSDVTKASLKCVSKTNL---------------ILES----QL-PEVEW-FYNGKKLPHGHRYRTFHDFGIVILDI 631 (805)
Q Consensus 573 a~n~~g~~~~~~~l~V~~~~~~---------------~~~~----~~-p~v~W-~~~g~~l~~~~~~~~~~~~~~~~L~i 631 (805)
|.| |. ...+.|.|..++.+ .+.| |. |.+.| ++||..+..+.++....++ .|.|
T Consensus 76 ~~n--g~-~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~p~~~~v~W~~~~g~~l~~~~~~~~~~~~---~L~i 149 (290)
T 2o26_X 76 NSN--GL-TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKA---GITI 149 (290)
T ss_dssp ESS--SC-EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSCCSCEEEEEEETTSCCCCTTCEEEEETTT---EEEE
T ss_pred eeC--Cc-cEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCCCCCceEEEEeCCCcCCCCCCceeeCCCC---CEEE
Confidence 999 54 77788888765432 2222 45 78999 5789988777666655443 3999
Q ss_pred ccCCCCCcE-EEEEEEEeCCcceEE-EEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCe
Q psy2166 632 LYCYEENSG-VYECRATNKYGSDVT-KASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEI 709 (805)
Q Consensus 632 ~~~~~~d~G-~Y~C~a~n~~g~~~~-~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~ 709 (805)
.++..+|+| .|+|.|.|..|.... .+.|.|...+ ..+|.|...+.+. .+.+|+.
T Consensus 150 ~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~-----------------------~~~P~i~~~~~~~-~v~~G~~ 205 (290)
T 2o26_X 150 KNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAI-----------------------KAIPVVSVPETSH-LLKKGDT 205 (290)
T ss_dssp ESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCC-----------------------CSCCEEECSCSBC-CCCTTCC
T ss_pred ecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCC-----------------------CCCCccccCCCcc-eEecCCc
Confidence 999999999 999999998665443 5778776321 1688998888888 9999999
Q ss_pred EEEEEEEeecCCCCeE-EEEEECCEEc----cCCCCeEEE---eeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 710 AHFEASLIPVGDQTMT-VEFLYNGKPI----EASHRIRTV---HAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 710 ~~l~C~~~~~g~p~~~-v~W~~~g~~l----~~~~~~~~~---~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
+.|.|.+. |.|.|. |+|+|+|..+ ......... .......|.|.++..+|+|.|+|.|.|.+|..+.++.
T Consensus 206 v~l~C~~~--g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~ 283 (290)
T 2o26_X 206 FTVVCTIK--DVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTT 283 (290)
T ss_dssp EEEEEEEE--ESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEE
T ss_pred EEEEEEEe--cCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEE
Confidence 99999999 889986 9999999773 433333222 1233458999999999999999999999999999999
Q ss_pred EEEEEeC
Q psy2166 782 LECVVWS 788 (805)
Q Consensus 782 l~V~~~~ 788 (805)
|.|...|
T Consensus 284 l~V~~~P 290 (290)
T 2o26_X 284 LKVVEKG 290 (290)
T ss_dssp ECC----
T ss_pred EEEEeCC
Confidence 9997543
|
| >4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=269.46 Aligned_cols=249 Identities=13% Similarity=0.106 Sum_probs=181.4
Q ss_pred cccccCCCeEEEEEEEeeCCCCCc-----EEEEEECCEEc-------------cCCCceEEEee-----CCEEEEEEccC
Q psy2166 505 VTQLKEGQSAHFEARLTPVTDPDL-----VVEWFYNGKKL-------------PHGHRYRTFHD-----FGIVILDILYC 561 (805)
Q Consensus 505 ~~~v~~G~~v~L~C~v~~~g~p~~-----~v~W~~~g~~l-------------~~~~~~~~~~~-----~~~~~L~i~~v 561 (805)
...+..|++++|.|.+. +.+.+ .++|+|+|... ....++..... .+...|.|.++
T Consensus 9 ~v~~~~G~~v~L~C~v~--~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v 86 (313)
T 4fqp_A 9 QVPGFLGDSVTLPCYLQ--VPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGL 86 (313)
T ss_dssp EECCBTTSCEEECCEEE--CCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEECSC
T ss_pred EEEEecCCCEEEEEEEE--CCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEECcC
Confidence 33478999999999998 44443 59999987532 22233332211 12345999999
Q ss_pred CCCCCEEEEEEEE-cCCcceEEEEEEEEeeeeeee---------------------ecCCCCeEEEEECCEEccCCCceE
Q psy2166 562 YEENSGVYECRAT-NKYGSDVTKASLKCVSKTNLI---------------------LESQLPEVEWFYNGKKLPHGHRYR 619 (805)
Q Consensus 562 ~~~d~G~Y~C~a~-n~~g~~~~~~~l~V~~~~~~~---------------------~~~~~p~v~W~~~g~~l~~~~~~~ 619 (805)
+.+|+|.|+|.|. +..|.....+.|.+...|.+. -..|.|.+.|++++..+....+..
T Consensus 87 ~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~ 166 (313)
T 4fqp_A 87 RVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVP 166 (313)
T ss_dssp CGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEE
T ss_pred ChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccccceee
Confidence 9999999999886 556677777777776655421 124678999999987775433322
Q ss_pred EEeeCC---EEEEEeccCCCCCcEEEEEEEEeCCcceEEEE--EEEEeeccccccccccccccCCCCCCCCCCCCCCCee
Q psy2166 620 TFHDFG---IVILDILYCYEENSGVYECRATNKYGSDVTKA--SLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQF 694 (805)
Q Consensus 620 ~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~--~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~ 694 (805)
...++. ...|.|.....+|+|.|+|.|.|..+...... .|.|. .+|.|
T Consensus 167 ~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~---------------------------~~P~v 219 (313)
T 4fqp_A 167 GFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVY---------------------------YPPEV 219 (313)
T ss_dssp CSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBC---------------------------EEEEE
T ss_pred eecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccc---------------------------cCCcc
Confidence 222222 23589999999999999999999887665544 44444 35666
Q ss_pred eecCCcccccCCCCeEEEEEEEeecCCCCe-EEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy2166 695 TSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKW 773 (805)
Q Consensus 695 ~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 773 (805)
...+.+...+.+|+.++|.|.+. |+|.| .|+|+|+|..+.... ...++ .|.|.+++.+|+|.|+|.|.|.+
T Consensus 220 ~~~~~~~~~~~~g~~v~l~C~~~--g~P~p~~v~W~~~~~~l~~~~----~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~ 291 (313)
T 4fqp_A 220 SISGYDNNWYLGQNEATLTCDAR--SNPEPTGYNWSTTMGPLPPFA----VAQGA--QLLIRPVDKPINTTLICNVTNAL 291 (313)
T ss_dssp EEECCCSCEETTCCCEEEEEEEE--EESCCCEEEEEETTBSCCTTE----EEETT--EEEECCCSSCCEEEEEEEEECSS
T ss_pred ccccccceeecCCCeEEEEEEec--CCCCCcEEEEEECCEECCCce----EEeCC--EEEECcCChhhCEEEEEEEEeCC
Confidence 55443332678899999999999 99998 699999999886542 22344 69999999999999999999999
Q ss_pred ccEEEEEEEEEEEeCCC
Q psy2166 774 GQAEISVNLECVVWSPS 790 (805)
Q Consensus 774 G~~~~~~~l~V~~~~~~ 790 (805)
|..+.+++|.|...||-
T Consensus 292 G~~~~~~~l~V~~~PP~ 308 (313)
T 4fqp_A 292 GARQAELTVQVKEGPPH 308 (313)
T ss_dssp CEEEEEEEEEEECCC--
T ss_pred CcEEEEEEEEEEeCCCC
Confidence 99999999999877664
|
| >1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-28 Score=267.10 Aligned_cols=429 Identities=13% Similarity=0.097 Sum_probs=236.3
Q ss_pred ccCCCceEEEEEEEeeCCCC--C--eEEEEEEC--CEEcc----------------CCCcEEEEEE--cCeEEEEEcCCC
Q psy2166 214 NLSEGEIAHFEASLIPVGDQ--T--MTVEFLYN--GKPIE----------------ASHRIRTVHA--FGMVVLEILGTK 269 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~p--~--~~i~W~k~--g~~l~----------------~~~~~~~~~~--~~~~~L~i~~~~ 269 (805)
.+.+|+.++|.|.+. +.+ . ..+.|||. |..+. ...++....+ .+...|.|.+++
T Consensus 11 ~v~~G~~v~L~C~~~--~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 88 (512)
T 1zvo_C 11 LVKPSETLSLTCIVS--GGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRSMS 88 (512)
T ss_pred EEcCCCCEEEEEEEc--ccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEECcCC
Confidence 478999999999984 332 2 78999985 32110 0234444332 235899999999
Q ss_pred CcccEEEEEEEEcCCe----------e---EEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCc
Q psy2166 270 IEDTGVYTCRATNKWG----------Q---AEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPEL 336 (805)
Q Consensus 270 ~~d~G~Y~C~~~n~~g----------~---~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~ 336 (805)
.+|+|.|.|.+.+..+ . ......|.|..... .+|.+............|+.++|.|.+.+ ..|.+
T Consensus 89 ~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~-~~P~i~~~~~~~~~~~~~~~v~L~C~~~g-~~P~p 166 (512)
T 1zvo_C 89 AADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPT-KAPDVFPIISGCRHPKDNSPVVLACLITG-YHPTS 166 (512)
T ss_pred HHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCC-cCCeEEeccCCcccccCCCeEEEEEEEEe-eecCc
Confidence 9999999999998642 1 12334566653221 24444422211110124689999999984 44654
Q ss_pred -EEEEEECCEEccCCCceEEEE-eC---cEEEEEEcccCcCCceEEEEEEEeCceeeEEEE-----------EEEEEecc
Q psy2166 337 -KVEWFHNGKPIFHKNRVKMVS-DF---GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRA-----------TIKCFGKG 400 (805)
Q Consensus 337 -~v~W~~~g~~l~~~~~~~~~~-~~---~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~-----------~l~V~~~~ 400 (805)
.|+|++++............. ++ ....|.|.....+ .|.|+|.|.|..+...... .+.+..+|
T Consensus 167 ~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~pp 245 (512)
T 1zvo_C 167 VTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQP 245 (512)
T ss_pred eEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeCCC
Confidence 899999764321000000111 11 1235888877777 9999999999988765544 12222111
Q ss_pred cccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCC
Q psy2166 401 GVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPS 480 (805)
Q Consensus 401 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~ 480 (805)
. ....+.. ..+ .|.- +++| .+.-. .......+ ..+ ...+.
T Consensus 246 ~---------~~~~~~~---~~~------------~~~~---------~~~g-~~~~~-~~~~~~~~-~~h----~~~~~ 285 (512)
T 1zvo_C 246 Q---------AEGSLAK---ATT------------APAT---------TRNT-GRGGE-EKKKEKEK-EEQ----EERET 285 (512)
T ss_pred c---------hhccccc---ccc------------Cchh---------hccC-ccccc-ceeccCCc-ccc----cccCc
Confidence 1 0000000 000 0000 0011 00000 00000000 000 00000
Q ss_pred CCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEcc
Q psy2166 481 QGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILY 560 (805)
Q Consensus 481 ~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~ 560 (805)
. ...-.....+|.+.+..+....+.+|+.++|.|.+.++.++...|+|+|||+.+.... . ...
T Consensus 286 ~----~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~--~-----------~~~ 348 (512)
T 1zvo_C 286 K----TPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGV--E-----------EGL 348 (512)
T ss_pred c----cccCCCCCCCCEEEEECCChHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCce--e-----------ccc
Confidence 0 0000112356777665544444778999999999995422346999999998764210 0 000
Q ss_pred CCCCCCEEEEEEEEcCCcceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcE
Q psy2166 561 CYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSG 640 (805)
Q Consensus 561 v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G 640 (805)
......|.|.. .+.|.|.....+|.|
T Consensus 349 ~~~~~~gt~~~------------------------------------------------------~s~L~i~~~~~~d~g 374 (512)
T 1zvo_C 349 LERHSNGSQSQ------------------------------------------------------HSRLTLPRSLWNAGT 374 (512)
T ss_pred eecCCCCeEEE------------------------------------------------------EEEEEEchHHhcCCC
Confidence 01112233321 112777777888889
Q ss_pred EEEEEEEeCCcceEEEEEEEEe-eccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEE-EEEEEee
Q psy2166 641 VYECRATNKYGSDVTKASLKCV-SKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAH-FEASLIP 718 (805)
Q Consensus 641 ~Y~C~a~n~~g~~~~~~~l~V~-~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~-l~C~~~~ 718 (805)
.|+|.|.|..+... ...+... ... ...+|.+...+.. . +|+.+. |.|.+.
T Consensus 375 ~y~C~a~n~~~~~~-~~~~~~~~~~~----------------------~~~~p~v~~~~~~--~--~~~~~~~L~C~~~- 426 (512)
T 1zvo_C 375 SVTCTLNHPSLPPQ-RLMALREPAAQ----------------------APVKLSLNLLASS--D--PPEAASWLLCEVS- 426 (512)
T ss_pred eEEEEEEeCCCCCC-ceeEEeecCCC----------------------CCCCCEEEEEccC--c--CCCCceEEEEEEe-
Confidence 99999988877654 3333221 000 0135665544332 1 799999 999999
Q ss_pred cCC-CC-eEEEEEECCEEccCCCCeE--E-EeeCcE-----EEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEEe
Q psy2166 719 VGD-QT-MTVEFLYNGKPIEASHRIR--T-VHAFGM-----VVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVW 787 (805)
Q Consensus 719 ~g~-p~-~~v~W~~~g~~l~~~~~~~--~-~~~~~~-----~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 787 (805)
|. |+ ..|+|+|||+++....... . ...++. ..|.|.....+|+|.|+|+|.|........+...|.+.
T Consensus 427 -g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~~~~v~ 504 (512)
T 1zvo_C 427 -GFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRSLEVS 504 (512)
T ss_pred -eeCCCCcEEEEEECCeECcCccccccceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCCceEEEEEEEec
Confidence 64 33 4789999999987653211 1 222331 46888888888999999999999876555555555443
|
| >2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=7.7e-30 Score=262.59 Aligned_cols=268 Identities=20% Similarity=0.188 Sum_probs=197.2
Q ss_pred CCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEE
Q psy2166 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 280 (805)
Q Consensus 201 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 280 (805)
.||.|...+... .+.+|+.++|.|.+ .+ .+.|+|+|..+ . . ....+ ..|.|.+++.+|+|.|+|.+
T Consensus 11 ~~P~i~~~~~~~-~v~~G~~v~l~C~~--~~----~i~W~~~~~~~----~-~-~~~~~-~~L~i~~~~~~d~G~Y~C~~ 76 (290)
T 2o26_X 11 SPPSIHPAQSEL-IVEAGDTLSLTCID--PD----FVRWTFKTYFN----E-M-VENKK-NEWIQEKAEATRTGTYTCSN 76 (290)
T ss_dssp -CCEESSCSSEE-EEETTSCEEEEEEC--TT----EEEEEEECSSS----C-E-EEECS-SEEEETTCCGGGCEEEEEEE
T ss_pred CCCEEeCCCCeE-EEcCCCcEEEEECC--CC----cEEEecCCcce----e-e-ecCCC-ceEEEeccCHHhCeEEEEEe
Confidence 578888665555 48899999999987 44 89999999876 1 1 11222 68999999999999999999
Q ss_pred EcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCC-cEEEE-EECCEEccCCCceEEEEe
Q psy2166 281 TNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE-LKVEW-FHNGKPIFHKNRVKMVSD 358 (805)
Q Consensus 281 ~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~-~~v~W-~~~g~~l~~~~~~~~~~~ 358 (805)
.| |. ...+.|.|.. +|.+....... .+.+|+.+.|.|.+. + |. +.+.| +++|..+....++....+
T Consensus 77 ~n--g~-~~~~~l~V~~-----~~~~~~~~~~~-~~~~g~~v~l~C~~~--~-p~~~~v~W~~~~g~~l~~~~~~~~~~~ 144 (290)
T 2o26_X 77 SN--GL-TSSIYVFVRD-----PAKLFLVGLPL-FGKEDSDALVRCPLT--D-PQVSQYSLIECDGKSLPTDLTFVPNPK 144 (290)
T ss_dssp SS--SC-EEEEEEEEEC-----SSCCBCCCCCE-EEETTSCEEECCCBS--C-CSCEEEEEEETTSCCCCTTCEEEEETT
T ss_pred eC--Cc-cEEEEEEEeC-----CCcccccccce-EEecCCeEEEeCcCC--C-CCCceEEEEeCCCcCCCCCCceeeCCC
Confidence 99 43 6667777764 33333333333 377999999999996 4 66 99999 568888876655544333
Q ss_pred CcEEEEEEcccCcCCce-EEEEEEEeCceeeEE-EEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCC
Q psy2166 359 FGFVVMDIAYVQSHDSG-EYVCRAWNKYGEDFT-RATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEA 436 (805)
Q Consensus 359 ~~~~~l~i~~v~~~d~G-~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (805)
. .|.|.++..+|+| .|+|.|.|..+.... .+.|.|...
T Consensus 145 -~--~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~------------------------------------- 184 (290)
T 2o26_X 145 -A--GITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREA------------------------------------- 184 (290)
T ss_dssp -T--EEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECC-------------------------------------
T ss_pred -C--CEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeC-------------------------------------
Confidence 2 5899999999999 999999998665443 466666421
Q ss_pred CceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEE
Q psy2166 437 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHF 516 (805)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L 516 (805)
...+|.+...+... .+.+|+.++|
T Consensus 185 -------------------------------------------------------~~~~P~i~~~~~~~-~v~~G~~v~l 208 (290)
T 2o26_X 185 -------------------------------------------------------IKAIPVVSVPETSH-LLKKGDTFTV 208 (290)
T ss_dssp -------------------------------------------------------CCSCCEEECSCSBC-CCCTTCCEEE
T ss_pred -------------------------------------------------------CCCCCccccCCCcc-eEecCCcEEE
Confidence 13667776665555 4899999999
Q ss_pred EEEEeeCCCCCcE-EEEEECCEEc----cCCCceEEE---eeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 517 EARLTPVTDPDLV-VEWFYNGKKL----PHGHRYRTF---HDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 517 ~C~v~~~g~p~~~-v~W~~~g~~l----~~~~~~~~~---~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
.|.+. |.|.|. |+|+|+|..+ ......... .......|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 209 ~C~~~--g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V 286 (290)
T 2o26_X 209 VCTIK--DVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286 (290)
T ss_dssp EEEEE--ESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC
T ss_pred EEEEe--cCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEE
Confidence 99999 667775 9999999873 322222222 1123457999999999999999999999999999999988
Q ss_pred eeee
Q psy2166 589 VSKT 592 (805)
Q Consensus 589 ~~~~ 592 (805)
..+|
T Consensus 287 ~~~P 290 (290)
T 2o26_X 287 VEKG 290 (290)
T ss_dssp ----
T ss_pred EeCC
Confidence 7654
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=282.27 Aligned_cols=299 Identities=20% Similarity=0.342 Sum_probs=143.1
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFT 152 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~ 152 (805)
+..+.+.+|+.++|.|.+.+ ..|.+.|.|+|||..+..+.++.+.. .+|.|.+++.+|+|.|+|.|.|. |....
T Consensus 15 ~~~~~v~~G~~v~l~C~~~~-~~p~~~v~W~k~g~~~~~~~~~~~~~----~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~ 88 (334)
T 1ry7_B 15 QEQLVFGSGDAVELSCPPPG-GGPMGPTVWVKDGTGLVPSERVLVGP----QRLQVLNASHEDSGAYSCRQRLT-QRVLC 88 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcEEEecCCcEEEEeeCCC-CCCCcceEEEECCeeCCCcccEEecc----ceEEEeecccccCEEEEEEEEeC-CeEEE
Confidence 55789999999999999983 23678999999999998777776532 38999999999999999999998 77777
Q ss_pred EEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccc---cccccCCCceEEEEEEEee
Q psy2166 153 STTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQ---HLSNLSEGEIAHFEASLIP 229 (805)
Q Consensus 153 ~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~v~~g~~~~l~C~~~~ 229 (805)
...|.|...+............ .. ......+|.|..... ....+.+|+.+.|.|.+
T Consensus 89 ~~~l~V~~~~~~~~~~~~~~~~------~~-------------~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~-- 147 (334)
T 1ry7_B 89 HFSVRVTDAPSSGDDEDGEDEA------ED-------------TGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPA-- 147 (334)
T ss_dssp -------------------------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCC--
T ss_pred EEEEEEeccCcccccccccccc------cc-------------ccccCCCCEEeccccccceeEEecCCCcEEEEEEc--
Confidence 7777776543211000000000 00 000012344432211 12246789999999987
Q ss_pred CCCCCeEEEEEECCEEccCCCcEE-EEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEeccCCCCCCeEEe
Q psy2166 230 VGDQTMTVEFLYNGKPIEASHRIR-TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTS 308 (805)
Q Consensus 230 ~~~p~~~i~W~k~g~~l~~~~~~~-~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~ 308 (805)
.+.|.+.+.|+|+|..+....++. .....+...|.|.+++.+|+|.|+|.+.|..|.....+.|.|...+. .+|.+..
T Consensus 148 ~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~-~~p~~~~ 226 (334)
T 1ry7_B 148 AGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP-HRPILQA 226 (334)
T ss_dssp CCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCC-SSCBCCT
T ss_pred cCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCC-CCCceEe
Confidence 688889999999999887654321 11223345899999999999999999999999988888888875322 1333333
Q ss_pred cCCCcccccCCCeEEEEEEEeecCCCCcEEEEEE----CCEEccCCCc--eEEEEe-------CcEEEEEEcccCcCCce
Q psy2166 309 HIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH----NGKPIFHKNR--VKMVSD-------FGFVVMDIAYVQSHDSG 375 (805)
Q Consensus 309 ~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~----~g~~l~~~~~--~~~~~~-------~~~~~l~i~~v~~~d~G 375 (805)
.......+.+|+.++|.|.+. +.|.+.+.|++ +|..+..... +.+... .....|.|.++..+|+|
T Consensus 227 ~~~~~~~~~~G~~v~l~C~~~--g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G 304 (334)
T 1ry7_B 227 GLPANQTAVLGSDVEFHCKVY--SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAG 304 (334)
T ss_dssp TCSCCEEEESSCCEEECCCCB--CSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCS
T ss_pred cCCCceEEeCCCCEEEEEEEe--cCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCE
Confidence 222333488999999999997 89999999999 7777654322 111111 11236999999999999
Q ss_pred EEEEEEEeCceeeEEEEEEEEEeccc
Q psy2166 376 EYVCRAWNKYGEDFTRATIKCFGKGG 401 (805)
Q Consensus 376 ~Y~C~a~n~~g~~~~~~~l~V~~~~~ 401 (805)
.|+|.|.|..|....++.|.|...+.
T Consensus 305 ~Y~C~a~N~~G~~~~~~~l~V~~~~~ 330 (334)
T 1ry7_B 305 EYTCLAGNSIGFSHHSAWLVVLPAEE 330 (334)
T ss_dssp EEEEEEEESSCCEEEEEEEEEECSCC
T ss_pred EEEEEEeCCCCeEEEEEEEEEEECCC
Confidence 99999999999999999999986654
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=273.65 Aligned_cols=265 Identities=18% Similarity=0.229 Sum_probs=162.8
Q ss_pred eEecCCCcccccCCCeEEEEEEEeeCCCC-----------CcEEEEEECCE------Ecc-CCCceEEEeeCCEEEEEEc
Q psy2166 498 FITQISDVTQLKEGQSAHFEARLTPVTDP-----------DLVVEWFYNGK------KLP-HGHRYRTFHDFGIVILDIL 559 (805)
Q Consensus 498 ~~~~~~~~~~v~~G~~v~L~C~v~~~g~p-----------~~~v~W~~~g~------~l~-~~~~~~~~~~~~~~~L~i~ 559 (805)
+...+.....+.+|+.+.|.|.+. +.| .+.++|+|+|. .+. ......+...++ .|.|.
T Consensus 9 ~~~~~~~~v~v~~G~~v~L~C~~~--~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~--~L~i~ 84 (349)
T 4dep_C 9 WGLDTMRQIQVFEDEPARIKCPLF--EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKD--VLWFR 84 (349)
T ss_dssp EEECCCCCCEEETTSCEEEECTCC--CCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETT--EEEES
T ss_pred cccceeeeEEEecCCeEEEEcccc--ccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCC--EEEEc
Confidence 334434444589999999999998 545 48999999883 222 011222333344 59999
Q ss_pred cCCCCCCEEEEEEEEcCCcceEEEEEEEEeeeee-------------------eeecC----------CCCeEEEEECCE
Q psy2166 560 YCYEENSGVYECRATNKYGSDVTKASLKCVSKTN-------------------LILES----------QLPEVEWFYNGK 610 (805)
Q Consensus 560 ~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~-------------------~~~~~----------~~p~v~W~~~g~ 610 (805)
+++.+|+|.|+|.|.|..|.....+.|.|..++. +.+.| |.|.+.|+|+|.
T Consensus 85 ~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~ 164 (349)
T 4dep_C 85 PTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCY 164 (349)
T ss_dssp SCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTE
T ss_pred cCChhhCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCE
Confidence 9999999999999999999999889998875332 23344 467999999999
Q ss_pred EccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCC-cce---EEEEEEEEeeccccccccccccccCCCCCCCCC
Q psy2166 611 KLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKY-GSD---VTKASLKCVSKTNLILESQLPELRRQPAGVPDS 686 (805)
Q Consensus 611 ~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~-g~~---~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~ 686 (805)
.+....++ ..++. .|.|.++..+|+|.|+|.|.|.. |.. ...+.|.|..++..
T Consensus 165 ~l~~~~~~--~~~~~--~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~------------------- 221 (349)
T 4dep_C 165 KIQNFNNV--IPEGM--NLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKN------------------- 221 (349)
T ss_dssp ECCSCSSE--EEETT--EEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGG-------------------
T ss_pred ECCCccce--eecCC--EEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCC-------------------
Confidence 99655443 33333 49999999999999999999987 554 56667777653211
Q ss_pred CCCCCCeeeecCCccc-ccCCCCeEEEEEEEeec--CCCCeEEEEEECCEEccC-CCCeEEEe-------eC--cEEEEE
Q psy2166 687 EDGRPPQFTSEFQHLS-NLSEGEIAHFEASLIPV--GDQTMTVEFLYNGKPIEA-SHRIRTVH-------AF--GMVVLE 753 (805)
Q Consensus 687 ~~~~~P~~~~~~~~~~-~v~~G~~~~l~C~~~~~--g~p~~~v~W~~~g~~l~~-~~~~~~~~-------~~--~~~~L~ 753 (805)
..+|.|...+.+.+ .+.+|+.++|.|.+.+. |.|.|.|.|+++|..+.. ..++.+.. ++ ...+|.
T Consensus 222 --~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 299 (349)
T 4dep_C 222 --AVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILS 299 (349)
T ss_dssp --CCSCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-
T ss_pred --CCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEE
Confidence 13677777665432 68899999999999843 568999999999998876 33332211 11 134599
Q ss_pred EcCCCCCCC-EEEEEEEEcCCccEEEEEEEEEEEeCCCc
Q psy2166 754 ILGTKIEDT-GVYTCRATNKWGQAEISVNLECVVWSPSQ 791 (805)
Q Consensus 754 i~~v~~~d~-G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~ 791 (805)
|.++..+|+ |.|+|.|.|.+|....++.|.|.+.+|.+
T Consensus 300 i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~~~p~~ 338 (349)
T 4dep_C 300 IKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPAPRY 338 (349)
T ss_dssp ------------CEEEEECSSCEEEEECC----------
T ss_pred EeeccHHHcCCcEEEEEEcCCCcEEEEEEEeeecCCCCC
Confidence 999999999 99999999999999999999997755543
|
| >1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-32 Score=297.33 Aligned_cols=378 Identities=12% Similarity=0.140 Sum_probs=221.7
Q ss_pred ccCCCceEEEEEEEeeCCC--CCeEEEEEECC--EEcc-----------------CCCcEEEEEE--cCeEEEEEcCCCC
Q psy2166 214 NLSEGEIAHFEASLIPVGD--QTMTVEFLYNG--KPIE-----------------ASHRIRTVHA--FGMVVLEILGTKI 270 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~--p~~~i~W~k~g--~~l~-----------------~~~~~~~~~~--~~~~~L~i~~~~~ 270 (805)
.+.+|+.++|.|.+ .+. +.+.+.|||++ ..+. ...++.+..+ .+...|.|.+++.
T Consensus 10 ~v~~G~~v~L~C~~--~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 87 (434)
T 1igy_B 10 LARPGASVKMSCKA--SGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSLTS 87 (434)
T ss_dssp EECTBCCEEECCEE--CSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSBCG
T ss_pred EecCCCCEEEEEEc--cCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCCCh
Confidence 47899999999998 444 36789999863 2210 1234443332 2346899999999
Q ss_pred cccEEEEEEEEcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCc-EEEEEECCEEccC
Q psy2166 271 EDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPEL-KVEWFHNGKPIFH 349 (805)
Q Consensus 271 ~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~-~v~W~~~g~~l~~ 349 (805)
+|+|.|+|.+.|..+.....+.|.|..... .+|.+........ +.+|+.++|.|.+.+ ..|.+ .|.|++++..+..
T Consensus 88 ~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~-~~P~i~~~~~~~~-~~~G~~v~L~C~~~g-~~P~p~~v~W~k~~~~~~~ 164 (434)
T 1igy_B 88 DDSAVYYCVREGEVPYWGQGTTVTVSSAKT-TPPSVYPLAPGSA-AQTNSMVTLGCLVKG-YFPEPVTVTWNSGSLSSGV 164 (434)
T ss_dssp GGCSEECCCCSSSSCCCCCCEECEECCSCC-BCCCEEEECCCCC-CCCTTEEEEEEEEEE-EBSSCCEEEETTTTBCSSE
T ss_pred HHCEEEEEEEEccccccCCceEEEEccCCC-CCCeEEEcCCccc-cCCCCcEEEEEEEee-ecCCCeEEEEeeCCcCCCe
Confidence 999999999998644444445666653211 2344443332232 678999999999984 34665 9999999875321
Q ss_pred CCceEEEEeC---cEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCC
Q psy2166 350 KNRVKMVSDF---GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQP 426 (805)
Q Consensus 350 ~~~~~~~~~~---~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 426 (805)
.........+ ....|.|.++..+| |.|+|.|.|..|.......+.+...
T Consensus 165 ~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~--------------------------- 216 (434)
T 1igy_B 165 HTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDC--------------------------- 216 (434)
T ss_dssp EECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCC---------------------------
T ss_pred EecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCC---------------------------
Confidence 0000000001 11358899999889 9999999999887544433322100
Q ss_pred ccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcc
Q psy2166 427 VAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVT 506 (805)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 506 (805)
.|... .......|.+...++...
T Consensus 217 -------------------------------------------~~~v~--------------~~~~~~~p~v~~~~p~~~ 239 (434)
T 1igy_B 217 -------------------------------------------GCKPC--------------ICTVPEVSSVFIFPPKPK 239 (434)
T ss_dssp -------------------------------------------CCCCC--------------CCCCSSSCCEEEECCCHH
T ss_pred -------------------------------------------CCccc--------------cCCCCcCcEEEEeCCChH
Confidence 00000 000001144444333322
Q ss_pred c-ccCCCeEEEEEEEeeCCC--CCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEE
Q psy2166 507 Q-LKEGQSAHFEARLTPVTD--PDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 583 (805)
Q Consensus 507 ~-v~~G~~v~L~C~v~~~g~--p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~ 583 (805)
. +.+|+.++|.|.+.+... +.+.|+|+|+|..+........ ...+.|.|.-.
T Consensus 240 ~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~--------------~~~~~~~~~~~----------- 294 (434)
T 1igy_B 240 DTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPR--------------EEQFNSTFRVV----------- 294 (434)
T ss_dssp HHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCC--------------CCCCSSSCCCC-----------
T ss_pred HhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcc--------------eeCCCCcEEEE-----------
Confidence 2 789999999999994311 2568999999987753321100 00111212100
Q ss_pred EEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEee
Q psy2166 584 ASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVS 663 (805)
Q Consensus 584 ~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 663 (805)
.. |.|.++..+|+|.|+|.|.|..|.......+.+.
T Consensus 295 --------~~-----------------------------------L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~- 330 (434)
T 1igy_B 295 --------SA-----------------------------------LPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKT- 330 (434)
T ss_dssp --------CC-----------------------------------EECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCC-
T ss_pred --------EE-----------------------------------EEECHHHccCCCcEEEEEECCCCCCceeEEEecc-
Confidence 00 4455555556666666666655543221111110
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCC-CC-eEEEEEECCEEccCCCCe
Q psy2166 664 KTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGD-QT-MTVEFLYNGKPIEASHRI 741 (805)
Q Consensus 664 ~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~-p~-~~v~W~~~g~~l~~~~~~ 741 (805)
.....+|.|...+... ...+|+.++|.|.+. |. |+ +.|+|+|||+.+......
T Consensus 331 ----------------------~~~~~~P~v~~~~~~~-~~~~~~~~~L~C~~~--g~~P~~~~v~W~k~g~~l~~~~~~ 385 (434)
T 1igy_B 331 ----------------------KGKPRAPQVYTIPPPK-EQMAKDKVSLTCMIT--DFFPEDITVEWQSDGQAPENYKNT 385 (434)
T ss_dssp ----------------------CSCCBCCCCEEECCCS-SSSSSSEEEEEEEEE--EEBCSCEEEEEEETTSCCSCCEEC
T ss_pred ----------------------CCCCcCCEEEEECCCH-HHhcCCcEEEEEEEE--eeECCCeEEEEEECCEecCCceec
Confidence 0011466666555444 345688899999998 63 43 599999999988543211
Q ss_pred EE-EeeCc----EEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 742 RT-VHAFG----MVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 742 ~~-~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
.. ...++ ...|.|.....+|+|.|+|.|.|....
T Consensus 386 ~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 424 (434)
T 1igy_B 386 QPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 424 (434)
T ss_dssp CCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred cceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCCC
Confidence 11 12222 235888888888999999999998653
|
| >4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=261.60 Aligned_cols=276 Identities=16% Similarity=0.164 Sum_probs=196.3
Q ss_pred ecCCCCceecCCCcEEEEEEEecCCCCC---ceEEEEECCEec-------------CCCCceEEEec-----CcEEEEEE
Q psy2166 70 VPLKPEFKLGEAQPLHLEAQVEPKNDPN---LKIEWIFNGKPL-------------ELGSRFKTTAD-----FGFVTLDL 128 (805)
Q Consensus 70 ~~~~~~~~v~~G~~v~L~C~~~~~~~p~---~~v~W~k~g~~i-------------~~~~~~~~~~~-----~~~~~L~I 128 (805)
+..|..+.+..|++++|.|.+.+...+. ..|.|+|+|... ....|+.+... .+..+|.|
T Consensus 4 v~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I 83 (313)
T 4fqp_A 4 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRM 83 (313)
T ss_dssp EECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEE
T ss_pred EcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEE
Confidence 4445578889999999999998432221 148999987532 23345544322 13457999
Q ss_pred cccccCCCeEEEEEEEe-CCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceec
Q psy2166 129 TEVYDRDQGIYTCRAWN-LAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTS 207 (805)
Q Consensus 129 ~~~~~~D~G~Y~C~a~n-~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 207 (805)
.+++.+|+|.|+|.+.+ ..+.....+.|.|..+ |.+..
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~-----------------------------------------P~~~~ 122 (313)
T 4fqp_A 84 FGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAK-----------------------------------------PQNTA 122 (313)
T ss_dssp CSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBC-----------------------------------------CEEEE
T ss_pred CcCChhhCEEEEEEEeeccCcceeeeeeeeeccC-----------------------------------------Cccee
Confidence 99999999999999864 3555666666655433 33333
Q ss_pred ccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcC---eEEEEEcCCCCcccEEEEEEEEcCC
Q psy2166 208 EFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG---MVVLEILGTKIEDTGVYTCRATNKW 284 (805)
Q Consensus 208 ~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~~~n~~ 284 (805)
.+... .+..|+.+.+.|.+. .+.|.+.+.|++++..+...........+. .+.|.|.....+|+|.|+|.|.|..
T Consensus 123 ~~~~~-~~~~~~~~~~~C~~~-~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~ 200 (313)
T 4fqp_A 123 EVQKV-QLTGEPVPMARCVST-GGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHES 200 (313)
T ss_dssp EECCB-CCCSSCEEEEEEEEE-EEBSCCEEEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTT
T ss_pred cccce-EeecCceEEEEEEcc-CccCCcEEEeecCCccccccceeeeecccccccceeeeecccccccCeeEEEEEEccC
Confidence 33332 366788899999764 478889999999998775433222111111 2469999999999999999999976
Q ss_pred eeE--EEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCc-EEEEEECCEEccCCCceEEEEeCcE
Q psy2166 285 GQA--EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPEL-KVEWFHNGKPIFHKNRVKMVSDFGF 361 (805)
Q Consensus 285 g~~--~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~ 361 (805)
+.. ...+.|.|. .+|.+...+.....+.+|+.++|.|.+. |.|.| .|+|+|+|..+.... ...+.
T Consensus 201 ~~~~~~~~~~l~V~-----~~P~v~~~~~~~~~~~~g~~v~l~C~~~--g~P~p~~v~W~~~~~~l~~~~----~~~~~- 268 (313)
T 4fqp_A 201 FEKPQLLTVNLTVY-----YPPEVSISGYDNNWYLGQNEATLTCDAR--SNPEPTGYNWSTTMGPLPPFA----VAQGA- 268 (313)
T ss_dssp SSSCEEEEEECCBC-----EEEEEEEECCCSCEETTCCCEEEEEEEE--EESCCCEEEEEETTBSCCTTE----EEETT-
T ss_pred cCccceeeeecccc-----cCCccccccccceeecCCCeEEEEEEec--CCCCCcEEEEEECCEECCCce----EEeCC-
Confidence 654 344444443 4566665555554477899999999998 78877 699999999886432 12233
Q ss_pred EEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEeccc
Q psy2166 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGG 401 (805)
Q Consensus 362 ~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~ 401 (805)
+|.|.++..+|+|.|+|.|.|..|....++.|.|..+|+
T Consensus 269 -~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~PP 307 (313)
T 4fqp_A 269 -QLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGPP 307 (313)
T ss_dssp -EEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC-
T ss_pred -EEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCCC
Confidence 599999999999999999999999999999999986654
|
| >1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-31 Score=279.72 Aligned_cols=278 Identities=19% Similarity=0.347 Sum_probs=142.3
Q ss_pred ccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEE
Q psy2166 214 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l 293 (805)
.+.+|+.+.|.|.+. .+.|.+.+.|+|+|..+....++.. ....|.|.+++.+|+|.|+|.+.|. +.....+.|
T Consensus 19 ~v~~G~~v~l~C~~~-~~~p~~~v~W~k~g~~~~~~~~~~~----~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~~~~~~l 92 (334)
T 1ry7_B 19 VFGSGDAVELSCPPP-GGGPMGPTVWVKDGTGLVPSERVLV----GPQRLQVLNASHEDSGAYSCRQRLT-QRVLCHFSV 92 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEecCCcEEEEeeCC-CCCCCcceEEEECCeeCCCcccEEe----ccceEEEeecccccCEEEEEEEEeC-CeEEEEEEE
Confidence 588999999999984 2336789999999998876655443 2357999999999999999999998 777777777
Q ss_pred EEeccCCC-----------------CCCeEEecC---CCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCce
Q psy2166 294 ECVDKSKG-----------------QPPKFTSHI---KSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRV 353 (805)
Q Consensus 294 ~v~~~~~~-----------------~~p~~~~~~---~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~ 353 (805)
.|...+.. .+|.+.... .....+.+|+.++|.|.+. +.|.+.+.|++++..+....++
T Consensus 93 ~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~--g~p~~~v~W~~~~~~~~~~~~~ 170 (334)
T 1ry7_B 93 RVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAA--GNPTPSISWLKNGREFRGEHRI 170 (334)
T ss_dssp --------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCC--CSSCCEEECCBTTBCCCTTSST
T ss_pred EEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEcc--CCCCCeEEEEECCEECcccccc
Confidence 77643211 123332111 1112367899999999997 7899999999999988754432
Q ss_pred E-EEEeCcEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCc
Q psy2166 354 K-MVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAP 432 (805)
Q Consensus 354 ~-~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 432 (805)
. .........|.|.++..+|+|.|+|.|.|..|.....+.|.|...+.
T Consensus 171 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~------------------------------- 219 (334)
T 1ry7_B 171 GGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP------------------------------- 219 (334)
T ss_dssp TCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCC-------------------------------
T ss_pred cceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCC-------------------------------
Confidence 1 11112334699999999999999999999999988888888864321
Q ss_pred ccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCC
Q psy2166 433 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQ 512 (805)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~ 512 (805)
.+|.+....+....+.+|+
T Consensus 220 -------------------------------------------------------------~~p~~~~~~~~~~~~~~G~ 238 (334)
T 1ry7_B 220 -------------------------------------------------------------HRPILQAGLPANQTAVLGS 238 (334)
T ss_dssp -------------------------------------------------------------SSCBCCTTCSCCEEEESSC
T ss_pred -------------------------------------------------------------CCCceEecCCCceEEeCCC
Confidence 2333333333333488999
Q ss_pred eEEEEEEEeeCCCCCcEEEEEE----CCEEccCCCce--EEEee-------CCEEEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 513 SAHFEARLTPVTDPDLVVEWFY----NGKKLPHGHRY--RTFHD-------FGIVILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 513 ~v~L~C~v~~~g~p~~~v~W~~----~g~~l~~~~~~--~~~~~-------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
.++|.|.+. |.|.+.++|+| ||..+..+.+. .+... .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 239 ~v~l~C~~~--g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 316 (334)
T 1ry7_B 239 DVEFHCKVY--SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGF 316 (334)
T ss_dssp CEEECCCCB--CSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCC
T ss_pred CEEEEEEEe--cCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCe
Confidence 999999998 78999999999 78777644331 11111 12236999999999999999999999999
Q ss_pred eEEEEEEEEeeeee
Q psy2166 580 DVTKASLKCVSKTN 593 (805)
Q Consensus 580 ~~~~~~l~V~~~~~ 593 (805)
...++.|.|...+.
T Consensus 317 ~~~~~~l~V~~~~~ 330 (334)
T 1ry7_B 317 SHHSAWLVVLPAEE 330 (334)
T ss_dssp EEEEEEEEEECSCC
T ss_pred EEEEEEEEEEECCC
Confidence 99999999987654
|
| >4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=268.27 Aligned_cols=287 Identities=19% Similarity=0.210 Sum_probs=176.3
Q ss_pred CeEEecCCCCceecCCCcEEEEEEEecCCCC-----------CceEEEEECCE------ecC-CCCceEEEecCcEEEEE
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDP-----------NLKIEWIFNGK------PLE-LGSRFKTTADFGFVTLD 127 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p-----------~~~v~W~k~g~------~i~-~~~~~~~~~~~~~~~L~ 127 (805)
+.+.+....++.|.+|+.++|.|.+. +.| .+.|.|+|++. .+. ......+...++ +|.
T Consensus 7 ~~~~~~~~~~v~v~~G~~v~L~C~~~--~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~--~L~ 82 (349)
T 4dep_C 7 DDWGLDTMRQIQVFEDEPARIKCPLF--EHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKD--VLW 82 (349)
T ss_dssp EEEEECCCCCCEEETTSCEEEECTCC--CCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETT--EEE
T ss_pred cccccceeeeEEEecCCeEEEEcccc--ccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCC--EEE
Confidence 44555656678999999999999998 444 48999999884 222 011222222233 799
Q ss_pred EcccccCCCeEEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceec
Q psy2166 128 LTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTS 207 (805)
Q Consensus 128 I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 207 (805)
|.+++.+|+|.|+|.|.|..+.......|.|..++... ++.+ .
T Consensus 83 i~~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~------------------------------------~~~~-~ 125 (349)
T 4dep_C 83 FRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCF------------------------------------NSPM-K 125 (349)
T ss_dssp ESSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTS------------------------------------CCSC-C
T ss_pred EccCChhhCEEEEEEEecCCceEEEEEEEEEecCCccc------------------------------------Cccc-c
Confidence 99999999999999999998888888888887643211 0111 1
Q ss_pred ccccccccCCCceEEEEEEEe---eCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCC
Q psy2166 208 EFQHLSNLSEGEIAHFEASLI---PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKW 284 (805)
Q Consensus 208 ~~~~~~~v~~g~~~~l~C~~~---~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 284 (805)
.+.. ..+.+|+.+.|.|.+. ..+.|.+.+.|+|+|..+....++. ..+ ..|.|.+++.+|+|.|+|.|.|..
T Consensus 126 ~~~~-~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~~--~~~--~~L~i~~v~~~d~G~Y~C~a~n~~ 200 (349)
T 4dep_C 126 LPVH-KLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVI--PEG--MNLSFLIALISNNGNYTCVVTYPE 200 (349)
T ss_dssp CCEE-EEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSEE--EET--TEEEEESCCGGGCEEEEEEEEEEE
T ss_pred cCcc-eeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCcccee--ecC--CEEEEeeeeecCCcEEEEEEEEee
Confidence 1111 1367999999999631 1367889999999999987654432 222 479999999999999999999975
Q ss_pred -eeE---EEEEEEEEeccCC-CCCCeEEecCCCcc-cccCCCeEEEEEEEeec--CCCCcEEEEEECCEEccC-CCceEE
Q psy2166 285 -GQA---EISVNLECVDKSK-GQPPKFTSHIKSLE-GLKDGDSAHFECTLTPV--NDPELKVEWFHNGKPIFH-KNRVKM 355 (805)
Q Consensus 285 -g~~---~~~~~l~v~~~~~-~~~p~~~~~~~~~~-~~~~g~~~~l~C~~~~~--~~p~~~v~W~~~g~~l~~-~~~~~~ 355 (805)
|.. +..+.|.|...+. ..+|.+........ .+.+|+.++|.|.+.+. +.|.+.+.|+++|..+.. ..++.+
T Consensus 201 ~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~ 280 (349)
T 4dep_C 201 NGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTI 280 (349)
T ss_dssp TTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCC
T ss_pred CCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCcccc
Confidence 443 5666666654211 11566554443321 47899999999999853 468899999999988865 222222
Q ss_pred EE-------e--CcEEEEEEcccCcCCc-eEEEEEEEeCceeeEEEEEEEEEe
Q psy2166 356 VS-------D--FGFVVMDIAYVQSHDS-GEYVCRAWNKYGEDFTRATIKCFG 398 (805)
Q Consensus 356 ~~-------~--~~~~~l~i~~v~~~d~-G~Y~C~a~n~~g~~~~~~~l~V~~ 398 (805)
.. + ....+|.|.++..+|. |.|+|.|.|..|.....+.|.|..
T Consensus 281 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~ 333 (349)
T 4dep_C 281 NESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKV 333 (349)
T ss_dssp CEEEECCTTCCEEEEECC-------------CEEEEECSSCEEEEECC-----
T ss_pred ccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeeec
Confidence 11 1 1233599999999999 999999999999999998888864
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=253.30 Aligned_cols=276 Identities=17% Similarity=0.190 Sum_probs=198.9
Q ss_pred CCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEE
Q psy2166 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 281 (805)
Q Consensus 202 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 281 (805)
+|.+...+... .+.+|+.++|.|.+ .+ .+.|++++... ...........|.|.+++.+|+|.|+|.+.
T Consensus 4 ~p~i~~~~~~~-~v~~G~~v~L~C~~--~~----~v~W~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 71 (289)
T 3ejj_X 4 APVIEPSGPEL-VVEPGETVTLRCVS--NG----SVEWDGPISPY-----WTLDPESPGSTLTTRNATFKNTGTYRCTEL 71 (289)
T ss_dssp CCEEESCSSEE-EECTTCCEEEEEEC--SS----CCEEECSCSSS-----SEECCCSSCCEEEESSCCGGGCEEEEEECC
T ss_pred CcEecCCCceE-EECCCCCEEEEEEe--CC----cEEEccCCCce-----EEEeccCCccEEEEeeeccccCEEEEEEEe
Confidence 45666555554 48899999999987 44 49999876432 122223344689999999999999999999
Q ss_pred cCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcE-EEEEE-CCEEccCCCceEEEEeC
Q psy2166 282 NKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELK-VEWFH-NGKPIFHKNRVKMVSDF 359 (805)
Q Consensus 282 n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~-v~W~~-~g~~l~~~~~~~~~~~~ 359 (805)
|..+.....+.|.|... +..+...+. ...+.+|+.+.|.|.+. +.+.+. +.|++ ++..+....++.+..+
T Consensus 72 ~~~~~~~~~~~l~V~~~----~~~~~~~~~-~~~v~~g~~v~L~C~~~--~~~~~~~v~W~~~~~~~~~~~~~~~~~~~- 143 (289)
T 3ejj_X 72 EDPMAGSTTIHLYVKDP----AHSWNLLAQ-EVTVVEGQEAVLPCLIT--DPALKDSVSLMREGGRQVLRKTVYFFSPW- 143 (289)
T ss_dssp C-----CEEEEEEECCS----SCSEEESCS-EEEEETTSCEEECEEES--CGGGGGSEEEEEGGGEECCTTCCEEEETT-
T ss_pred ccCCcceeEEEEEEeCC----Ccceecccc-eEEEecCCceEeEEEcc--CCCcceEEEEEecCCeecCCCccEEECCC-
Confidence 98887788888888742 222444443 33488999999999997 555554 99986 7788876666655433
Q ss_pred cEEEEEEcccCcCCceEEEEEEE-eCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCc
Q psy2166 360 GFVVMDIAYVQSHDSGEYVCRAW-NKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPK 438 (805)
Q Consensus 360 ~~~~l~i~~v~~~d~G~Y~C~a~-n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (805)
+ .|.|.++..+|+|.|+|.|. +..+.....+.|.|...
T Consensus 144 ~--~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~--------------------------------------- 182 (289)
T 3ejj_X 144 R--GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRV--------------------------------------- 182 (289)
T ss_dssp T--EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESS---------------------------------------
T ss_pred C--CEEEeecccccCEEEEEEEEeCCCccccccEEEEEEEC---------------------------------------
Confidence 3 48899999999999999999 44455556677776421
Q ss_pred eeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEE
Q psy2166 439 FITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEA 518 (805)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C 518 (805)
...+|.+...+.... +.+|+.++|.|
T Consensus 183 -----------------------------------------------------~~~~p~i~~~~~~~~-~~~g~~~~l~C 208 (289)
T 3ejj_X 183 -----------------------------------------------------HPEPPQIKLEPSKLV-RIRGEAAQIVC 208 (289)
T ss_dssp -----------------------------------------------------CCCCCEEEEESSSEE-CCSSSCEEEEE
T ss_pred -----------------------------------------------------CCCCCeEEecCCceE-EEeCCcEEEEE
Confidence 125677777666554 68999999999
Q ss_pred EEeeCCCCCcEEEEEECCEEccCCCceEEEe--eCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeeeee
Q psy2166 519 RLTPVTDPDLVVEWFYNGKKLPHGHRYRTFH--DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTN 593 (805)
Q Consensus 519 ~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~ 593 (805)
.+.+ +.|.+.+.|+++|..+.......... ......|.|.+++.+|+|.|+|.|.|..|....++.|.+...+.
T Consensus 209 ~~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~~ 284 (289)
T 3ejj_X 209 SATN-AEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHH 284 (289)
T ss_dssp EEEE-SSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC----
T ss_pred EeCC-CCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEeccc
Confidence 9995 37899999999999987543222111 11245799999999999999999999999999999998876654
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-29 Score=264.17 Aligned_cols=272 Identities=15% Similarity=0.157 Sum_probs=200.0
Q ss_pred CceecCCCcEEEEEEEecCCCC-CceEEEEECCEecC----CCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCee
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDP-NLKIEWIFNGKPLE----LGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGE 149 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p-~~~v~W~k~g~~i~----~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~ 149 (805)
.+.+.+|+.++|.|.+. +.+ .+.|.|+|+|..+. ...++.... + +|.|.+++.+|+|.|+|.|.|..|.
T Consensus 14 ~~~v~~G~~v~L~C~~~--~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~--~--~L~i~~v~~~D~G~Y~C~a~n~~g~ 87 (315)
T 1itb_B 14 ILVSSANEIDVRPCPLN--PNEHKGTITWYKDDSKTPVSTEQASRIHQHK--E--KLWFVPAKVEDSGHYYCVVRNSSYC 87 (315)
T ss_dssp CCEEETTSCCCCBCCCC--SCCCSSCCCEECTTSCSCSCCCTTSSSEECS--S--BEECTTCCGGGCSCCEECCCSSSCC
T ss_pred EEEEcCCCcEEEEeecc--CcCCCceEEEEeCCCcCccccccCCcEeccC--C--eEEECCCChhhCEEEEEEEeCCceE
Confidence 67899999999999998 454 78999999986543 234554442 2 7999999999999999999998877
Q ss_pred EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccc--cccccCCCceEEEEEEE
Q psy2166 150 TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQ--HLSNLSEGEIAHFEASL 227 (805)
Q Consensus 150 ~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~v~~g~~~~l~C~~ 227 (805)
......+.|... +|.+...+. ....+.+|+.+.|.|.+
T Consensus 88 ~~~~~~v~v~~~----------------------------------------~p~~~~~~~~~~~~~~~~g~~v~l~C~~ 127 (315)
T 1itb_B 88 LRIKISAKFVEN----------------------------------------EPNLCYNAQAIFKQKLPVAGDGGLVCPY 127 (315)
T ss_dssp CCEECCCEEECC----------------------------------------CTTSSSCGGGEEEEEEETTSCEEEECSS
T ss_pred EEEEEEEEEeCC----------------------------------------CCCcccccccccceEEecCCCeEEEEec
Confidence 665555554321 222221111 11236789999999975
Q ss_pred e----eCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEE-cCCeeE---EEEEEEEEeccC
Q psy2166 228 I----PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT-NKWGQA---EISVNLECVDKS 299 (805)
Q Consensus 228 ~----~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~-n~~g~~---~~~~~l~v~~~~ 299 (805)
. ..+.|.+.+.|+|+|..+...... .....+ .|.|.+++.+|+|.|+|.|. |..|.. ...+.+.+....
T Consensus 128 ~~~~~~~g~p~~~i~W~k~~~~l~~~~~~-~~~~~~--~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~ 204 (315)
T 1itb_B 128 MEFFKNENNELPKLQWYKDCKPLLLDNIH-FSGVKD--RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEEN 204 (315)
T ss_dssp CTTTCTTTTCCCCCEEEETTEECCCCSSS-EEEETT--EEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCC
T ss_pred ccccccCCCCCCEEEEEECCEECCCccce-EeecCc--eEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCC
Confidence 2 247888999999999998654322 122233 79999999999999999999 777765 344455454433
Q ss_pred CCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEE-----Ee-------CcEEEEEEc
Q psy2166 300 KGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV-----SD-------FGFVVMDIA 367 (805)
Q Consensus 300 ~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~-----~~-------~~~~~l~i~ 367 (805)
...+|.+...+.....+.+|+.++|.|.+. +.|.+.+.|+++|..+......... .. .....|.|.
T Consensus 205 ~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~--g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 282 (315)
T 1itb_B 205 KPTRPVIVSPANETMEVDLGSQIQLICNVT--GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNIS 282 (315)
T ss_dssp CCCCCEECSCCSEEEECCSSSCEEEEEEEE--ECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEES
T ss_pred CCCCCEEecCCCCcEEEeCCCcEEEEEEEe--cCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEe
Confidence 346677765554433488999999999998 7888999999999999865432211 11 123479999
Q ss_pred ccCcCC-ceEEEEEEEeCceeeEEEEEEEEE
Q psy2166 368 YVQSHD-SGEYVCRAWNKYGEDFTRATIKCF 397 (805)
Q Consensus 368 ~v~~~d-~G~Y~C~a~n~~g~~~~~~~l~V~ 397 (805)
++..+| +|.|+|.|.|..|.....+.|.|.
T Consensus 283 ~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~ 313 (315)
T 1itb_B 283 EIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 313 (315)
T ss_dssp SCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred ecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence 999999 999999999999999999888764
|
| >1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-30 Score=270.84 Aligned_cols=269 Identities=17% Similarity=0.263 Sum_probs=198.0
Q ss_pred ccCCCceEEEEEEEeeCCCC-CeEEEEEECCEEccC----CCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEE
Q psy2166 214 NLSEGEIAHFEASLIPVGDQ-TMTVEFLYNGKPIEA----SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 288 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~p-~~~i~W~k~g~~l~~----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~ 288 (805)
.+.+|+.+.|.|.+ .+.| .+.+.|+|+|..+.. ..++.. .+ ..|.|.+++.+|+|.|+|.+.|..+...
T Consensus 16 ~v~~G~~v~L~C~~--~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~--~~--~~L~i~~v~~~D~G~Y~C~a~n~~g~~~ 89 (315)
T 1itb_B 16 VSSANEIDVRPCPL--NPNEHKGTITWYKDDSKTPVSTEQASRIHQ--HK--EKLWFVPAKVEDSGHYYCVVRNSSYCLR 89 (315)
T ss_dssp EEETTSCCCCBCCC--CSCCCSSCCCEECTTSCSCSCCCTTSSSEE--CS--SBEECTTCCGGGCSCCEECCCSSSCCCC
T ss_pred EEcCCCcEEEEeec--cCcCCCceEEEEeCCCcCccccccCCcEec--cC--CeEEECCCChhhCEEEEEEEeCCceEEE
Confidence 47899999999988 5555 789999999875432 223222 22 2799999999999999999999988777
Q ss_pred EEEEEEEeccCCCCCCeEEecCC--CcccccCCCeEEEEEEE------eecCCCCcEEEEEECCEEccCCCceEEEEeCc
Q psy2166 289 ISVNLECVDKSKGQPPKFTSHIK--SLEGLKDGDSAHFECTL------TPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG 360 (805)
Q Consensus 289 ~~~~l~v~~~~~~~~p~~~~~~~--~~~~~~~g~~~~l~C~~------~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~ 360 (805)
..+.+.+.. .+|.+...+. ....+..|+.+.|.|.+ . +.|.+.+.|++++..+...... +...+.
T Consensus 90 ~~~~v~v~~----~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~--g~p~~~i~W~k~~~~l~~~~~~-~~~~~~ 162 (315)
T 1itb_B 90 IKISAKFVE----NEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNE--NNELPKLQWYKDCKPLLLDNIH-FSGVKD 162 (315)
T ss_dssp EECCCEEEC----CCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTT--TTCCCCCEEEETTEECCCCSSS-EEEETT
T ss_pred EEEEEEEeC----CCCCcccccccccceEEecCCCeEEEEecccccccC--CCCCCEEEEEECCEECCCccce-EeecCc
Confidence 766666554 2333321111 11237789999999997 5 8899999999999998654322 223333
Q ss_pred EEEEEEcccCcCCceEEEEEEE-eCceeeEE---EEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCC
Q psy2166 361 FVVMDIAYVQSHDSGEYVCRAW-NKYGEDFT---RATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEA 436 (805)
Q Consensus 361 ~~~l~i~~v~~~d~G~Y~C~a~-n~~g~~~~---~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (805)
.|.|.++..+|+|.|+|.|. |..|.... .+.+.+...
T Consensus 163 --~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~------------------------------------- 203 (315)
T 1itb_B 163 --RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEE------------------------------------- 203 (315)
T ss_dssp --EEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECC-------------------------------------
T ss_pred --eEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecC-------------------------------------
Confidence 69999999999999999999 77776632 233322211
Q ss_pred CceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEE
Q psy2166 437 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHF 516 (805)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L 516 (805)
....+|.+...+.....+.+|+.++|
T Consensus 204 ------------------------------------------------------~~~~~P~~~~~~~~~~~~~~g~~v~l 229 (315)
T 1itb_B 204 ------------------------------------------------------NKPTRPVIVSPANETMEVDLGSQIQL 229 (315)
T ss_dssp ------------------------------------------------------CCCCCCEECSCCSEEEECCSSSCEEE
T ss_pred ------------------------------------------------------CCCCCCEEecCCCCcEEEeCCCcEEE
Confidence 01356777655554445899999999
Q ss_pred EEEEeeCCCCCcEEEEEECCEEccCCCceEE-----Eee-------CCEEEEEEccCCCCC-CEEEEEEEEcCCcceEEE
Q psy2166 517 EARLTPVTDPDLVVEWFYNGKKLPHGHRYRT-----FHD-------FGIVILDILYCYEEN-SGVYECRATNKYGSDVTK 583 (805)
Q Consensus 517 ~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~-----~~~-------~~~~~L~i~~v~~~d-~G~Y~C~a~n~~g~~~~~ 583 (805)
.|.+. |.|.|.++|++||..+....+... ... .....|.|.+++.+| +|.|+|.|.|..|.....
T Consensus 230 ~C~~~--g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~ 307 (315)
T 1itb_B 230 ICNVT--GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAY 307 (315)
T ss_dssp EEEEE--ECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEE
T ss_pred EEEEe--cCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEE
Confidence 99999 678889999999999987653222 111 124479999999999 999999999999999999
Q ss_pred EEEEEee
Q psy2166 584 ASLKCVS 590 (805)
Q Consensus 584 ~~l~V~~ 590 (805)
+.|.|.+
T Consensus 308 ~~l~v~~ 314 (315)
T 1itb_B 308 IQLIYPV 314 (315)
T ss_dssp EEEECCC
T ss_pred EEEEecC
Confidence 9998753
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-30 Score=271.38 Aligned_cols=285 Identities=19% Similarity=0.209 Sum_probs=210.9
Q ss_pred CCCeEEecCCCCceecCCCcEEEEEEEecC-----CCCCceEEEEECCEec--CCCCceEEEecCcEEEEEEcccccCCC
Q psy2166 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPK-----NDPNLKIEWIFNGKPL--ELGSRFKTTADFGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 64 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~-----~~p~~~v~W~k~g~~i--~~~~~~~~~~~~~~~~L~I~~~~~~D~ 136 (805)
..|.|...+. .+.+.+|+.++|.|.+.+. +.|.+.|.|+|+|..+ ....+..+...++ +|.|.+++.+|+
T Consensus 17 ~~p~~~~~~~-~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~ 93 (339)
T 3o4o_C 17 SCRFRGRHYK-REFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDG--ALWLLPALQEDS 93 (339)
T ss_dssp -CEEEEECSC-CEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETT--EEEESSBCTTCC
T ss_pred hhHhhCcCce-EEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCC--eEEECCCCcccC
Confidence 4577776665 7899999999999998621 5788899999999874 3332333333333 799999999999
Q ss_pred eEEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccC
Q psy2166 137 GIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLS 216 (805)
Q Consensus 137 G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~ 216 (805)
|.|+|.+.|..|.......|.|..++.... + +...+ ..+.
T Consensus 94 G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~------------------------------------~-~~~~~---~~~~ 133 (339)
T 3o4o_C 94 GTYVCTTRNASYCDKMSIELRVFENTDAFL------------------------------------P-FISYP---QILT 133 (339)
T ss_dssp EEEECCEEETTEEEEEEEEEEEECSCGGGH------------------------------------H-HHCEE---EEEE
T ss_pred EEEEEEEECCcceEEEEEEEEEEcCCCccc------------------------------------c-ccccc---eEEE
Confidence 999999999999888888888876542110 0 00000 1367
Q ss_pred CCceEEEEEEEe---eCCCCCeEEEEEECCEEccCC-CcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCe----eEE
Q psy2166 217 EGEIAHFEASLI---PVGDQTMTVEFLYNGKPIEAS-HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG----QAE 288 (805)
Q Consensus 217 ~g~~~~l~C~~~---~~~~p~~~i~W~k~g~~l~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g----~~~ 288 (805)
+|+.+.|.|.+. ..+.|.+.+.|+|+|..+... .++... .+...|.|.+++.+|+|.|+|.|.|..+ ...
T Consensus 134 ~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 211 (339)
T 3o4o_C 134 LSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSV--RGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNIT 211 (339)
T ss_dssp TTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEEC--TTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEE
T ss_pred CCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEc--CCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEE
Confidence 999999999821 167888999999999998765 344322 2224799999999999999999999776 457
Q ss_pred EEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEE---eecCCC-CcEEEEEECCEEccCC---------CceEE
Q psy2166 289 ISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTL---TPVNDP-ELKVEWFHNGKPIFHK---------NRVKM 355 (805)
Q Consensus 289 ~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~---~~~~~p-~~~v~W~~~g~~l~~~---------~~~~~ 355 (805)
..+.|.|.......+|.+...+... .+.+|+.+.|.|.+ . +.| .+.+.|+++|..+... .++.+
T Consensus 212 ~~~~l~V~~~~~~~~P~i~~~~~~~-~v~~G~~v~L~C~~~~~~--g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~ 288 (339)
T 3o4o_C 212 RSIELRIKKKKEETIPVIISPLKTI-SASLGSRLTIPCKVFLGT--GTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEY 288 (339)
T ss_dssp EEEEEEEECCCCCCCCEECCCSCCC-CCCCCSCCCCCCCEEESS--SCCSSCEEEEESSSSCSSSSSCSSSCEECCCEEC
T ss_pred EEEEEEEEcCCCCCCCEEecCCcee-EeccCCCEEEEEEEECCC--CCCCCceEEEEECCeecccccccccceecceEEe
Confidence 7788888765444566766554433 48899999999999 6 778 8899999999876422 22222
Q ss_pred EEeCc---EEEEEEcccCcCCc-eEEEEEEEeCceeeEEEEEEEE
Q psy2166 356 VSDFG---FVVMDIAYVQSHDS-GEYVCRAWNKYGEDFTRATIKC 396 (805)
Q Consensus 356 ~~~~~---~~~l~i~~v~~~d~-G~Y~C~a~n~~g~~~~~~~l~V 396 (805)
..++. ...|.|.++..+|. |.|+|.|.|..|.....+.+.+
T Consensus 289 ~~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~ 333 (339)
T 3o4o_C 289 SENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKE 333 (339)
T ss_dssp CCSSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCCC
T ss_pred cccCceEEEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhhH
Confidence 22222 22699999999997 9999999999999988776654
|
| >4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-30 Score=264.77 Aligned_cols=272 Identities=14% Similarity=0.126 Sum_probs=193.5
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecC-----------------CCCceEEEe-cCcEEEEEEcccccCCC
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLE-----------------LGSRFKTTA-DFGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~-----------------~~~~~~~~~-~~~~~~L~I~~~~~~D~ 136 (805)
++.+.+|++++|.|.+.+ +.+.+.|+|+|++.... ...|+.+.. ..+..+|.|.+++.+|+
T Consensus 8 ~vtv~~G~~v~L~C~v~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~ 86 (308)
T 4fom_A 8 HVTAVWGKNVSLKCLIEV-NETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDS 86 (308)
T ss_dssp SCEEETTSCEEECCBCCC-SSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGC
T ss_pred EeEEEcCCcEEEEEEecC-CCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHC
Confidence 678999999999999873 35666899999653221 112333321 12345799999999999
Q ss_pred eEEEEEEEeC-CeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccccccccc
Q psy2166 137 GIYTCRAWNL-AGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNL 215 (805)
Q Consensus 137 G~Y~C~a~n~-~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v 215 (805)
|.|+|.|.|. .|.......+.+...+... +...+.. ...
T Consensus 87 G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~---------------------------------------~~~~~~~-~~~ 126 (308)
T 4fom_A 87 GKYICKAVTFPLGNAQSSTTVTVLVEPTVS---------------------------------------LIKGPDS-LID 126 (308)
T ss_dssp EEEEEEEEETTTEEEEEEEEEEEEBCCEEE---------------------------------------EEECSSC-CCT
T ss_pred EEEEEEEeeCCCcceeeeeEEEeeeccccc---------------------------------------cccccce-eEE
Confidence 9999999886 5666777777776543221 1111112 235
Q ss_pred CCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEE-EEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEE--EEEE
Q psy2166 216 SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT-VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE--ISVN 292 (805)
Q Consensus 216 ~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~--~~~~ 292 (805)
..|+.+.|.|.+. .+.|.+.+.|++++..+........ ........|.|..+..+|+|.|+|.|.|..+... .++.
T Consensus 127 ~~~~~~~l~C~~~-~g~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~ 205 (308)
T 4fom_A 127 GGNETVAAICIAA-TGKPVAHIDWEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFI 205 (308)
T ss_dssp TCSCEEEEEEEEE-EEBSCCEEEECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEE
T ss_pred cCCceEEEEEEec-CCcCCceEEEEECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEE
Confidence 6789999999764 5788999999999987754321100 0011135799999999999999999999876544 4444
Q ss_pred EEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCc-EEEEEECCEEccCCCceEEEEeCcEEEEEEcccCc
Q psy2166 293 LECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPEL-KVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQS 371 (805)
Q Consensus 293 l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~ 371 (805)
|.|. .+|.+...+.+...+..|+.++|.|.+. +.|.| .+.|+|++..+...... . ....|.|.++..
T Consensus 206 l~V~-----~~P~~~~~~~~~~~~~~g~~v~l~C~~~--g~P~p~~v~W~k~~~~~~~~~~~----~-~~~~l~i~~v~~ 273 (308)
T 4fom_A 206 LDIQ-----YAPEVSVTGYDGNWFVGRKGVNLKCNAD--ANPPPFKSVWSRLDGQWPDGLLA----S-DNTLHFVHPLTF 273 (308)
T ss_dssp CCCC-----EEEEECCBCCCSCEETTCCSCEEECCEE--EESCEEEEECCBSSSCCCSSCBC----S-TTEEECCSCCCS
T ss_pred EEEe-----cCCeeEEcccceeeeeccccEEEEEEEe--cCCCCcEEEEEECCeECCCcEEE----c-CCeEEEECCCCh
Confidence 4443 4556655555554577899999999998 77877 69999999887644221 1 223467889999
Q ss_pred CCceEEEEEEEeCceeeEEEEEEEEEecc
Q psy2166 372 HDSGEYVCRAWNKYGEDFTRATIKCFGKG 400 (805)
Q Consensus 372 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 400 (805)
+|+|.|+|.|.|..|....++.|.|.++|
T Consensus 274 ~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P 302 (308)
T 4fom_A 274 NYSGVYICKVTNSLGQRSDQKVIYISDPP 302 (308)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCEECCC
T ss_pred hhCEEEEEEEEeCCCcEEEEEEEEEEcCC
Confidence 99999999999999999999999998765
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=255.81 Aligned_cols=265 Identities=15% Similarity=0.145 Sum_probs=191.5
Q ss_pred CceecCCCcEEEEEEEecCC-------CCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCe-EEEEEEEeC
Q psy2166 75 EFKLGEAQPLHLEAQVEPKN-------DPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQG-IYTCRAWNL 146 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~-------~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G-~Y~C~a~n~ 146 (805)
.+.+.+|+.++|.|.+.+.. +|.+.|+|+|++..+....+. . .++ +|.|.+++.+|+| .|+|.|.|.
T Consensus 38 ~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~-~-~~~---~L~i~~v~~~D~Gs~Y~C~a~n~ 112 (329)
T 3oq3_B 38 NDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR-V-KNG---DLWIANYTSNDSHRRYLCTVTTK 112 (329)
T ss_dssp EEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT-E-ETT---EEEESSCCGGGGGCCEEEEEECT
T ss_pred eEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce-e-ecc---eEEEcCCChHhCCCcEEEEEEeC
Confidence 56799999999999998532 377899999999877655444 2 222 7999999999999 999999998
Q ss_pred CeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEE
Q psy2166 147 AGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEAS 226 (805)
Q Consensus 147 ~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~ 226 (805)
.|.......+.|.. .||.+...... ..+.+|+.+.|.|.
T Consensus 113 ~g~~~~~~~~~v~~----------------------------------------~~p~~~~~~~~-~~~~~G~~v~L~C~ 151 (329)
T 3oq3_B 113 NGDCVQGIVRSHIR----------------------------------------KPPSCIPETYE-LGTHDKYGIDLYCG 151 (329)
T ss_dssp TSCEEEEEEEEEEC----------------------------------------CCCSCEEEEEE-TTSSTTTCEEEECC
T ss_pred CCceeeEEEEEEEc----------------------------------------CCCcEeccccc-eEEeCCCcEEEEec
Confidence 87654443333332 12332222222 23678999999998
Q ss_pred EeeCCCC-CeEEEEEECCEEccCC-CcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcC--CeeE----EEEEEEEEecc
Q psy2166 227 LIPVGDQ-TMTVEFLYNGKPIEAS-HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNK--WGQA----EISVNLECVDK 298 (805)
Q Consensus 227 ~~~~~~p-~~~i~W~k~g~~l~~~-~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~--~g~~----~~~~~l~v~~~ 298 (805)
+ .+.| .+.+.|+|+|..+... .++... + ..|.|.+++.+|+|.|+|.|.|. .|.. +..+.|.|...
T Consensus 152 ~--~g~p~~~~i~W~k~~~~l~~~~~~~~~~--~--~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~ 225 (329)
T 3oq3_B 152 I--LYAKHYNNITWYKNNQELIIDGTKYSQS--G--QNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPS 225 (329)
T ss_dssp C--CSCCCCCEEEEEETTEECCCSSSSEEEE--T--TEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECC
T ss_pred c--CCCCCCceEEEEECCccCCCCCceEecC--C--CEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECC
Confidence 7 6888 8999999999998633 343322 2 47999999999999999999986 4433 33366777643
Q ss_pred CCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCC---Cc-EEEEEECCEEc-cCCCceEEE--EeC--cEEEEEEccc
Q psy2166 299 SKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDP---EL-KVEWFHNGKPI-FHKNRVKMV--SDF--GFVVMDIAYV 369 (805)
Q Consensus 299 ~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p---~~-~v~W~~~g~~l-~~~~~~~~~--~~~--~~~~l~i~~v 369 (805)
+....|.+ .+.. ..+.+|+.++|.|.+. +.| .+ .+.|+++|..+ ....+.... ..+ ....|.|.++
T Consensus 226 ~~~~~~~~--~~~~-~~v~~G~~~~l~C~~~--g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v 300 (329)
T 3oq3_B 226 QDHRFKLI--LDPK-INVTIGEPANITCTAV--STSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENV 300 (329)
T ss_dssp CCCCEEEE--CCSE-EEECTTSCEEEEEEEE--ETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSC
T ss_pred CCCCCcee--cCCe-eEEecCCCEEEEEEEE--ECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEec
Confidence 21111222 3333 3488999999999998 555 66 89999999885 333332221 122 3457999999
Q ss_pred CcCCce-EEEEEEEeCceeeEEEEEEEE
Q psy2166 370 QSHDSG-EYVCRAWNKYGEDFTRATIKC 396 (805)
Q Consensus 370 ~~~d~G-~Y~C~a~n~~g~~~~~~~l~V 396 (805)
..+|+| .|+|.|.|..|.....+.|.|
T Consensus 301 ~~~D~G~~Y~C~a~N~~G~~~~~~~l~v 328 (329)
T 3oq3_B 301 TEEYIGNTYTCRGHNYYFDKTLTTTVVL 328 (329)
T ss_dssp CGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred cHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence 999999 999999999999998888775
|
| >3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=251.40 Aligned_cols=274 Identities=16% Similarity=0.218 Sum_probs=197.2
Q ss_pred CeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEe
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWN 145 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 145 (805)
|.++...+..+.+.+|+.++|.|.+. + .|.|++++... ..........+|.|.+++.+|+|.|+|.+.|
T Consensus 4 ~p~i~~~~~~~~v~~G~~v~L~C~~~--~----~v~W~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 72 (289)
T 3ejj_X 4 APVIEPSGPELVVEPGETVTLRCVSN--G----SVEWDGPISPY-----WTLDPESPGSTLTTRNATFKNTGTYRCTELE 72 (289)
T ss_dssp CCEEESCSSEEEECTTCCEEEEEECS--S----CCEEECSCSSS-----SEECCCSSCCEEEESSCCGGGCEEEEEECCC
T ss_pred CcEecCCCceEEECCCCCEEEEEEeC--C----cEEEccCCCce-----EEEeccCCccEEEEeeeccccCEEEEEEEec
Confidence 34444555578899999999999987 3 49999876432 2233333445899999999999999999999
Q ss_pred CCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEE
Q psy2166 146 LAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEA 225 (805)
Q Consensus 146 ~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C 225 (805)
..+.......|.|..++.. +...+.. ..+.+|+.+.|.|
T Consensus 73 ~~~~~~~~~~l~V~~~~~~----------------------------------------~~~~~~~-~~v~~g~~v~L~C 111 (289)
T 3ejj_X 73 DPMAGSTTIHLYVKDPAHS----------------------------------------WNLLAQE-VTVVEGQEAVLPC 111 (289)
T ss_dssp -----CEEEEEEECCSSCS----------------------------------------EEESCSE-EEEETTSCEEECE
T ss_pred cCCcceeEEEEEEeCCCcc----------------------------------------eecccce-EEEecCCceEeEE
Confidence 8887777778887653311 2222222 2478999999999
Q ss_pred EEeeCCCCCeE-EEEEE-CCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEE-cCCeeEEEEEEEEEeccCCCC
Q psy2166 226 SLIPVGDQTMT-VEFLY-NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT-NKWGQAEISVNLECVDKSKGQ 302 (805)
Q Consensus 226 ~~~~~~~p~~~-i~W~k-~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~-n~~g~~~~~~~l~v~~~~~~~ 302 (805)
.+ .+.+.+. +.|++ ++..+....++.... + ..|.|.+++.+|+|.|+|.+. +..+..+..+.|.|.... ..
T Consensus 112 ~~--~~~~~~~~v~W~~~~~~~~~~~~~~~~~~-~--~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~-~~ 185 (289)
T 3ejj_X 112 LI--TDPALKDSVSLMREGGRQVLRKTVYFFSP-W--RGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVH-PE 185 (289)
T ss_dssp EE--SCGGGGGSEEEEEGGGEECCTTCCEEEET-T--TEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSC-CC
T ss_pred Ec--cCCCcceEEEEEecCCeecCCCccEEECC-C--CCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECC-CC
Confidence 98 5555554 99986 777777666654422 2 359999999999999999999 555556667777776432 14
Q ss_pred CCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEe--CcEEEEEEcccCcCCceEEEEE
Q psy2166 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD--FGFVVMDIAYVQSHDSGEYVCR 380 (805)
Q Consensus 303 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~--~~~~~l~i~~v~~~d~G~Y~C~ 380 (805)
+|.+...+.... +.+|+.++|.|.+.+ +.|.+.+.|++++..+........... .....|.|.++..+|+|.|+|.
T Consensus 186 ~p~i~~~~~~~~-~~~g~~~~l~C~~~~-~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 263 (289)
T 3ejj_X 186 PPQIKLEPSKLV-RIRGEAAQIVCSATN-AEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCV 263 (289)
T ss_dssp CCEEEEESSSEE-CCSSSCEEEEEEEEE-SSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEE
T ss_pred CCeEEecCCceE-EEeCCcEEEEEEeCC-CCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEE
Confidence 667766666554 678999999999983 478999999999998865422211000 1234799999999999999999
Q ss_pred EEeCceeeEEEEEEEEEec
Q psy2166 381 AWNKYGEDFTRATIKCFGK 399 (805)
Q Consensus 381 a~n~~g~~~~~~~l~V~~~ 399 (805)
|.|..|....++.|.+..+
T Consensus 264 a~N~~G~~~~s~~L~~~~~ 282 (289)
T 3ejj_X 264 ASNDVGTRTATMNFQVVES 282 (289)
T ss_dssp EECSSCEEEEEEEEECC--
T ss_pred EEcCCCCccccEEEEEEec
Confidence 9999999999999987544
|
| >3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-30 Score=274.41 Aligned_cols=284 Identities=16% Similarity=0.208 Sum_probs=208.3
Q ss_pred CCCceecccccccccCCCceEEEEEEEeeC-----CCCCeEEEEEECCEEc--cCCCcEEEEEEcCeEEEEEcCCCCccc
Q psy2166 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPV-----GDQTMTVEFLYNGKPI--EASHRIRTVHAFGMVVLEILGTKIEDT 273 (805)
Q Consensus 201 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~-----~~p~~~i~W~k~g~~l--~~~~~~~~~~~~~~~~L~i~~~~~~d~ 273 (805)
..|.|...+.+. .+.+|+.+.|.|.+... +.|.+.+.|+|+|..+ ......++...++ .|.|.+++.+|+
T Consensus 17 ~~p~~~~~~~~~-~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~ 93 (339)
T 3o4o_C 17 SCRFRGRHYKRE-FRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDG--ALWLLPALQEDS 93 (339)
T ss_dssp -CEEEEECSCCE-EEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETT--EEEESSBCTTCC
T ss_pred hhHhhCcCceEE-EEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCC--eEEECCCCcccC
Confidence 467788877766 48899999999987211 7888999999999874 3332333333444 799999999999
Q ss_pred EEEEEEEEcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEE-----EeecCCCCcEEEEEECCEEcc
Q psy2166 274 GVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECT-----LTPVNDPELKVEWFHNGKPIF 348 (805)
Q Consensus 274 G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~-----~~~~~~p~~~v~W~~~g~~l~ 348 (805)
|.|+|.+.|..+.....+.|.|...+. ...........+.+|+.+.|.|. +. +.|.+.+.|+++|..+.
T Consensus 94 G~Y~C~~~n~~g~~~~~~~l~V~~~~~----~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~--g~p~~~v~W~k~g~~~~ 167 (339)
T 3o4o_C 94 GTYVCTTRNASYCDKMSIELRVFENTD----AFLPFISYPQILTLSTSGVLVCPDLSEFTR--DKTDVKIQWYKDSLLLD 167 (339)
T ss_dssp EEEECCEEETTEEEEEEEEEEEECSCG----GGHHHHCEEEEEETTSCEEEECCSCTTTCC--SSSCCCBCCEESSCBCC
T ss_pred EEEEEEEECCcceEEEEEEEEEEcCCC----ccccccccceEEECCCCEEEEecCCccccc--CCCCceEEEecCCeeCC
Confidence 999999999999888888888875321 11001111123789999999999 55 78899999999999987
Q ss_pred CC-CceEEEEeCcEEEEEEcccCcCCceEEEEEEEeCce----eeEEEEEEEEEecccccccCCChhHHHHHHHhhhccC
Q psy2166 349 HK-NRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYG----EDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQG 423 (805)
Q Consensus 349 ~~-~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g----~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~ 423 (805)
.. .++.+..+. ..|.|.++..+|+|.|+|.|.|..| .....+.|.|...+.
T Consensus 168 ~~~~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~---------------------- 223 (339)
T 3o4o_C 168 KDNEKFLSVRGT--THLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKE---------------------- 223 (339)
T ss_dssp TTCSSEEECTTS--SEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCC----------------------
T ss_pred CCCceeEEcCCc--ceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCC----------------------
Confidence 55 344433322 2699999999999999999999887 455567777653221
Q ss_pred CCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCC
Q psy2166 424 QQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQIS 503 (805)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~ 503 (805)
..+|.+...+.
T Consensus 224 ---------------------------------------------------------------------~~~P~i~~~~~ 234 (339)
T 3o4o_C 224 ---------------------------------------------------------------------ETIPVIISPLK 234 (339)
T ss_dssp ---------------------------------------------------------------------CCCCEECCCSC
T ss_pred ---------------------------------------------------------------------CCCCEEecCCc
Confidence 23566655533
Q ss_pred CcccccCCCeEEEEEEE---eeCCCC-CcEEEEEECCEEccC---------CCceEEEeeCC---EEEEEEccCCCCCC-
Q psy2166 504 DVTQLKEGQSAHFEARL---TPVTDP-DLVVEWFYNGKKLPH---------GHRYRTFHDFG---IVILDILYCYEENS- 566 (805)
Q Consensus 504 ~~~~v~~G~~v~L~C~v---~~~g~p-~~~v~W~~~g~~l~~---------~~~~~~~~~~~---~~~L~i~~v~~~d~- 566 (805)
. ..+.+|+.++|.|.+ . |.| .+.+.|+++|..+.. +.++....++. .+.|.|.+++.+|+
T Consensus 235 ~-~~v~~G~~v~L~C~~~~~~--g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~v~~~d~~ 311 (339)
T 3o4o_C 235 T-ISASLGSRLTIPCKVFLGT--GTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLH 311 (339)
T ss_dssp C-CCCCCCSCCCCCCCEEESS--SCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECSSCCCSCC
T ss_pred e-eEeccCCCEEEEEEEECCC--CCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEEechhhcC
Confidence 3 348999999999999 6 667 889999999987642 22222222332 22699999999998
Q ss_pred EEEEEEEEcCCcceEEEEEEEEe
Q psy2166 567 GVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 567 G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
|.|+|.|.|..|..+..+.|.+.
T Consensus 312 G~Y~C~a~N~~G~~~~~~~~~~~ 334 (339)
T 3o4o_C 312 MDFKCVVHNTLSFQTLRTTVKEH 334 (339)
T ss_dssp CCCEEEEEETTEEECCBCCCCC-
T ss_pred ccEEEEEEeccCceEEEEEhhHh
Confidence 99999999999999887766543
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=240.89 Aligned_cols=243 Identities=17% Similarity=0.241 Sum_probs=185.3
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCCc-eEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEE
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNL-KIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRA 143 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 143 (805)
+|.|...+. .+.+.+|+.++|.|.+. +.|.+ .|+|+|+|..+..... +|.|.+++.+|+|.|+|.+
T Consensus 1 kP~i~~~p~-~~~v~~G~~v~l~C~~~--~~~~~~~~~W~~~g~~~~~~~~----------~l~i~~~~~~d~G~Y~C~~ 67 (262)
T 3rjd_A 1 KAVITLQPP-WVSVFQEETVTLHCEVL--HLPGSSSTQWFLNGTATQTSTP----------SYRITSASVNDSGEYRCQR 67 (262)
T ss_dssp CCEEEESSC-CSEEETTCCEEEEEECS--SCCCTTCEEEEETTEECSCCSS----------EEEESSCCGGGCEEEEEEE
T ss_pred CCeEecCCC-cEEeeCCCeEEEEEECC--CCCCCceEEEEECCEEeeccCC----------eEEEecCCcccCeEEEEEE
Confidence 477777665 57899999999999998 56666 9999999999875422 6999999999999999999
Q ss_pred EeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEE
Q psy2166 144 WNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF 223 (805)
Q Consensus 144 ~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l 223 (805)
.|..+.. ...|.|..++ +...+... .+.+|+.+.|
T Consensus 68 ~~~~~s~--~~~l~v~~~~------------------------------------------~~~~~~~~-~~~~g~~v~l 102 (262)
T 3rjd_A 68 GLSGRSD--PIQLEIHRGW------------------------------------------LLLQVSSR-VFTEGEPLAL 102 (262)
T ss_dssp SSSCCCC--CEEEEEECSS------------------------------------------EEEEESCS-EEETTSCEEE
T ss_pred ecCCccc--cEEEEEeccc------------------------------------------eEecCCCe-EEecCCeEEE
Confidence 8865543 3455554321 11111222 3678999999
Q ss_pred EEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEeccCCCCC
Q psy2166 224 EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQP 303 (805)
Q Consensus 224 ~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~ 303 (805)
.|.+. .+.|.+.+.|+++|..+... .....|.|.+++.+|+|.|+|.+.|..+..+..+.|.|.... .+
T Consensus 103 ~C~~~-~~~p~~~v~W~~~g~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~--~~ 171 (262)
T 3rjd_A 103 RCHAW-KDKLVYNVLYYRNGKAFKFF--------HWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELF--PA 171 (262)
T ss_dssp EEEEG-GGCCCEEEEEEETTEEEEEE--------EECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSS--CC
T ss_pred EEEcc-CCCCCceEEEEECCcccccc--------CCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCC--CC
Confidence 99874 46788999999999887422 112469999999999999999999999888888888887532 35
Q ss_pred CeEEecCCCcccccCCCeEEEEEEEeecCCCC-c----EEEEEECCEEccCCCceEEEEeCcEEEEEEcccCcCCceEEE
Q psy2166 304 PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE-L----KVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378 (805)
Q Consensus 304 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~-~----~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~ 378 (805)
|.+...+ .. .+.+|+.+.|.|.+. +.|. + .+.|++++..+... .....|.|.++..+|+|.|+
T Consensus 172 p~~~~~~-~~-~~~~g~~~~l~C~~~--~~p~~p~~~~~~~w~~~~~~~~~~--------~~~~~L~i~~v~~~d~G~Y~ 239 (262)
T 3rjd_A 172 PVLNASV-TS-PLLEGNLVTLSCETK--LLLQRPGLQLYFSFYMGSKTLRGR--------NTSSEYQILTARREDSGLYW 239 (262)
T ss_dssp CEEEESS-CS-SEETTCCEEEEEECC--CCCC-----EEEEEEETTEEEEEE--------ESCCEEEESSCCGGGCEEEE
T ss_pred CeEeecC-ce-eecCCCeEEEEeEcc--cCCCCCCccEEEEEEeCCcEeccc--------CCCceEEEEEechhhCeEEE
Confidence 5555544 22 378999999999997 6554 3 37899999877421 12336999999999999999
Q ss_pred EEEEeCceee
Q psy2166 379 CRAWNKYGED 388 (805)
Q Consensus 379 C~a~n~~g~~ 388 (805)
|.|.|..|..
T Consensus 240 C~a~n~~G~~ 249 (262)
T 3rjd_A 240 CEAATEDGNV 249 (262)
T ss_dssp EEEEETTSSC
T ss_pred EEEEcccCce
Confidence 9999999965
|
| >4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-29 Score=262.34 Aligned_cols=273 Identities=12% Similarity=0.106 Sum_probs=191.0
Q ss_pred ccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccC-----------------CCcEEEEE-EcCeEEEEEcCCCCcccEE
Q psy2166 214 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEA-----------------SHRIRTVH-AFGMVVLEILGTKIEDTGV 275 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~-----------------~~~~~~~~-~~~~~~L~i~~~~~~d~G~ 275 (805)
.+.+|++++|.|.+. .+.+.+.+.|+|++..... ..+..... ..+..+|.|.+++.+|+|.
T Consensus 10 tv~~G~~v~L~C~v~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~ 88 (308)
T 4fom_A 10 TAVWGKNVSLKCLIE-VNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSGK 88 (308)
T ss_dssp EEETTSCEEECCBCC-CSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCEE
T ss_pred EEEcCCcEEEEEEec-CCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCEE
Confidence 367899999999873 2456678999996532210 11111111 1134579999999999999
Q ss_pred EEEEEEcC-CeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceE
Q psy2166 276 YTCRATNK-WGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVK 354 (805)
Q Consensus 276 Y~C~~~n~-~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~ 354 (805)
|+|.|.|. .+..+..+.+.+... ++..............|+.+.|.|.+.+ +.|.+.|.|++++..+.......
T Consensus 89 Y~C~a~n~~~~~~~~~~~~~v~~~----~~~~~~~~~~~~~~~~~~~~~l~C~~~~-g~P~~~i~W~~~~~~~~~~~~~~ 163 (308)
T 4fom_A 89 YICKAVTFPLGNAQSSTTVTVLVE----PTVSLIKGPDSLIDGGNETVAAICIAAT-GKPVAHIDWEGDLGEMESTTTSF 163 (308)
T ss_dssp EEEEEEETTTEEEEEEEEEEEEBC----CEEEEEECSSCCCTTCSCEEEEEEEEEE-EBSCCEEEECCCSSBCCEEEEEC
T ss_pred EEEEEeeCCCcceeeeeEEEeeec----cccccccccceeEEcCCceEEEEEEecC-CcCCceEEEEECCccccccccee
Confidence 99999885 566677777776642 2222222223333667899999998753 88999999999998875321100
Q ss_pred EE-EeCcEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcc
Q psy2166 355 MV-SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPV 433 (805)
Q Consensus 355 ~~-~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 433 (805)
.. .......|.|..+..+|+|.|+|.|.|..|.......+.+.
T Consensus 164 ~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~------------------------------------ 207 (308)
T 4fom_A 164 PNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILD------------------------------------ 207 (308)
T ss_dssp TTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC------------------------------------
T ss_pred eeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEE------------------------------------
Confidence 00 00112358999999999999999999988765544443321
Q ss_pred cCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCe
Q psy2166 434 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQS 513 (805)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~ 513 (805)
+..+|.+.........+.+|+.
T Consensus 208 ----------------------------------------------------------V~~~P~~~~~~~~~~~~~~g~~ 229 (308)
T 4fom_A 208 ----------------------------------------------------------IQYAPEVSVTGYDGNWFVGRKG 229 (308)
T ss_dssp ----------------------------------------------------------CCEEEEECCBCCCSCEETTCCS
T ss_pred ----------------------------------------------------------EecCCeeEEcccceeeeecccc
Confidence 2345555555444444788999
Q ss_pred EEEEEEEeeCCCCCc-EEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeeee
Q psy2166 514 AHFEARLTPVTDPDL-VVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKT 592 (805)
Q Consensus 514 v~L~C~v~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 592 (805)
++|.|.+. |.|.| .++|+|+|..+..+... . +...|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..+|
T Consensus 230 v~l~C~~~--g~P~p~~v~W~k~~~~~~~~~~~----~-~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P 302 (308)
T 4fom_A 230 VNLKCNAD--ANPPPFKSVWSRLDGQWPDGLLA----S-DNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPP 302 (308)
T ss_dssp CEEECCEE--EESCEEEEECCBSSSCCCSSCBC----S-TTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC
T ss_pred EEEEEEEe--cCCCCcEEEEEECCeECCCcEEE----c-CCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCC
Confidence 99999999 56777 79999999888654221 1 23457889999999999999999999999999999998877
Q ss_pred e
Q psy2166 593 N 593 (805)
Q Consensus 593 ~ 593 (805)
.
T Consensus 303 ~ 303 (308)
T 4fom_A 303 H 303 (308)
T ss_dssp -
T ss_pred C
Confidence 5
|
| >3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=254.67 Aligned_cols=264 Identities=17% Similarity=0.188 Sum_probs=190.2
Q ss_pred ccCCCceEEEEEEEeeCC-------CCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccE-EEEEEEEcCCe
Q psy2166 214 NLSEGEIAHFEASLIPVG-------DQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTG-VYTCRATNKWG 285 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~-------~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~~n~~g 285 (805)
.+.+|+.+.|.|.+.... .|.+.+.|+|+|..+....+. ..+ ..|.|.+++.+|+| .|+|.|.|..|
T Consensus 40 ~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~---~~~--~~L~i~~v~~~D~Gs~Y~C~a~n~~g 114 (329)
T 3oq3_B 40 MAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR---VKN--GDLWIANYTSNDSHRRYLCTVTTKNG 114 (329)
T ss_dssp EECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT---EET--TEEEESSCCGGGGGCCEEEEEECTTS
T ss_pred EEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce---eec--ceEEEcCCChHhCCCcEEEEEEeCCC
Confidence 488999999999874322 367899999999877654432 222 37999999999999 99999999887
Q ss_pred eEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCC-CcEEEEEECCEEccC-CCceEEEEeCcEEE
Q psy2166 286 QAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDP-ELKVEWFHNGKPIFH-KNRVKMVSDFGFVV 363 (805)
Q Consensus 286 ~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p-~~~v~W~~~g~~l~~-~~~~~~~~~~~~~~ 363 (805)
.........+.. .+|.+....... .+.+|+.+.|.|.+. +.| .+.+.|+|++..+.. ..++... +. .
T Consensus 115 ~~~~~~~~~v~~----~~p~~~~~~~~~-~~~~G~~v~L~C~~~--g~p~~~~i~W~k~~~~l~~~~~~~~~~--~~--~ 183 (329)
T 3oq3_B 115 DCVQGIVRSHIR----KPPSCIPETYEL-GTHDKYGIDLYCGIL--YAKHYNNITWYKNNQELIIDGTKYSQS--GQ--N 183 (329)
T ss_dssp CEEEEEEEEEEC----CCCSCEEEEEET-TSSTTTCEEEECCCC--SCCCCCEEEEEETTEECCCSSSSEEEE--TT--E
T ss_pred ceeeEEEEEEEc----CCCcEeccccce-EEeCCCcEEEEeccC--CCCCCceEEEEECCccCCCCCceEecC--CC--E
Confidence 655444434443 234433333222 267899999999987 788 899999999999863 3344333 33 6
Q ss_pred EEEcccCcCCceEEEEEEEeC--ceeeEEE----EEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCC
Q psy2166 364 MDIAYVQSHDSGEYVCRAWNK--YGEDFTR----ATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAP 437 (805)
Q Consensus 364 l~i~~v~~~d~G~Y~C~a~n~--~g~~~~~----~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (805)
|.|.++..+|+|.|+|.|.|. .|..... +.|.|..++..
T Consensus 184 L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~----------------------------------- 228 (329)
T 3oq3_B 184 LIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDH----------------------------------- 228 (329)
T ss_dssp EEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCC-----------------------------------
T ss_pred EEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCC-----------------------------------
Confidence 999999999999999999987 5443333 55665432210
Q ss_pred ceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEE
Q psy2166 438 KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE 517 (805)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~ 517 (805)
.. .++ .+....+.+|+.++|.
T Consensus 229 --------------------------------------------------------~~-~~~--~~~~~~v~~G~~~~l~ 249 (329)
T 3oq3_B 229 --------------------------------------------------------RF-KLI--LDPKINVTIGEPANIT 249 (329)
T ss_dssp --------------------------------------------------------CE-EEE--CCSEEEECTTSCEEEE
T ss_pred --------------------------------------------------------CC-cee--cCCeeEEecCCCEEEE
Confidence 00 111 2222448899999999
Q ss_pred EEEeeCCCC---Cc-EEEEEECCEEc-cCCCceEEE--eeC--CEEEEEEccCCCCCCE-EEEEEEEcCCcceEEEEEEE
Q psy2166 518 ARLTPVTDP---DL-VVEWFYNGKKL-PHGHRYRTF--HDF--GIVILDILYCYEENSG-VYECRATNKYGSDVTKASLK 587 (805)
Q Consensus 518 C~v~~~g~p---~~-~v~W~~~g~~l-~~~~~~~~~--~~~--~~~~L~i~~v~~~d~G-~Y~C~a~n~~g~~~~~~~l~ 587 (805)
|.+.+ .| .+ .+.|+++|..+ ..+.+.... ..+ ....|.|.+++.+|+| .|+|.|.|..|.....+.|.
T Consensus 250 C~~~g--~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~ 327 (329)
T 3oq3_B 250 CTAVS--TSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVV 327 (329)
T ss_dssp EEEEE--TTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEE
T ss_pred EEEEE--CCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEE
Confidence 99995 44 66 99999999985 333332222 122 3567999999999999 99999999999999998887
Q ss_pred Ee
Q psy2166 588 CV 589 (805)
Q Consensus 588 V~ 589 (805)
|.
T Consensus 328 v~ 329 (329)
T 3oq3_B 328 LE 329 (329)
T ss_dssp EC
T ss_pred eC
Confidence 73
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=254.95 Aligned_cols=271 Identities=13% Similarity=0.200 Sum_probs=178.1
Q ss_pred ecCCCCceecCCCcEEEEEEEecCCC-CCceEEEEECCEecC---------CCCceEEEec-----CcEEEEEEcccccC
Q psy2166 70 VPLKPEFKLGEAQPLHLEAQVEPKND-PNLKIEWIFNGKPLE---------LGSRFKTTAD-----FGFVTLDLTEVYDR 134 (805)
Q Consensus 70 ~~~~~~~~v~~G~~v~L~C~~~~~~~-p~~~v~W~k~g~~i~---------~~~~~~~~~~-----~~~~~L~I~~~~~~ 134 (805)
...+..+.+.+|+.++|.|.+. +. |.+.|+|+|++..+. ...|+....+ ....+|.|.+++.+
T Consensus 7 ~~~p~~~~v~~G~~v~L~C~~~--~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~ 84 (327)
T 2wng_A 7 IQPDKSVSVAAGESAILHCTVT--SLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPA 84 (327)
T ss_dssp ECCCSEEEEETTSCEEECCEES--CCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGG
T ss_pred EcCCCceEEecCCcEEEEEEcc--CcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccc
Confidence 3445578999999999999998 44 788999999985432 1125554322 34457999999999
Q ss_pred CCeEEEEEEEeCCeeE-----EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccc
Q psy2166 135 DQGIYTCRAWNLAGET-----FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEF 209 (805)
Q Consensus 135 D~G~Y~C~a~n~~g~~-----~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 209 (805)
|+|.|+|.|.|..+.. .....|.|..++ .+|.+. .+
T Consensus 85 D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p--------------------------------------~~p~i~-~~ 125 (327)
T 2wng_A 85 DAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKP--------------------------------------SAPVVS-GP 125 (327)
T ss_dssp GCEEEEEEEEESSTTCEEEEECCCEEEEEEBCC--------------------------------------CCCEEE-CC
T ss_pred cCeEEEEEeecCCCcceeEeecCcEEEEEEecC--------------------------------------CCceee-cc
Confidence 9999999999986531 123567776543 234443 11
Q ss_pred ccccccCCCceEEEEEEEeeCCCCC--eEEEEEECCEEccCCCcEEEEE-EcC----eEEEEEcCCCCcccEEEEEEEEc
Q psy2166 210 QHLSNLSEGEIAHFEASLIPVGDQT--MTVEFLYNGKPIEASHRIRTVH-AFG----MVVLEILGTKIEDTGVYTCRATN 282 (805)
Q Consensus 210 ~~~~~v~~g~~~~l~C~~~~~~~p~--~~i~W~k~g~~l~~~~~~~~~~-~~~----~~~L~i~~~~~~d~G~Y~C~~~n 282 (805)
. ..+.+|+.+.|.|.+. +.|+ ..+.|+|+|..+.......... .++ ...|.|.....+|+|.|+|.|.|
T Consensus 126 -~-~~~~~g~~~~l~C~~~--g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n 201 (327)
T 2wng_A 126 -A-ARATPQHTVSFTCESH--GFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAH 201 (327)
T ss_dssp -S-SCBCTTCEEEEEEEEE--EEBSSCCEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEEC
T ss_pred -c-cccCCCCEEEEEEEEe--CccCCCcEEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEec
Confidence 2 2478999999999985 4443 3999999999987543221111 111 24688888888889999999999
Q ss_pred CCeeE---EEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCc-EEEEEECCEEccCCCceEEEEe
Q psy2166 283 KWGQA---EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPEL-KVEWFHNGKPIFHKNRVKMVSD 358 (805)
Q Consensus 283 ~~g~~---~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~-~v~W~~~g~~l~~~~~~~~~~~ 358 (805)
..+.. ..+..+.+.. ..+|.+...+.. +.+|+.++|.|.+.+ ..|.+ .|.|++||+.+.......+...
T Consensus 202 ~~~~~~~~~~~~~~~~~v---~~~P~i~~~~~~---~~~G~~v~l~C~~~g-~~p~~~~v~W~k~g~~l~~~~~~~~~~~ 274 (327)
T 2wng_A 202 VTLQGDPLRGTANLSETI---RVPPTLEVTQQP---VRAENQVNVTCQVRK-FYPQRLQLTWLENGNVSRTETASTVTEN 274 (327)
T ss_dssp TTSCSCCEEEEEEGGGTB---CBCCEEEEEEEC---CSSTTCCEEEEEEEE-EBSSCEEEEEEETTEEEEEEECCSCEEC
T ss_pred cccCCCcccceEEecccc---CCCCEEEEecCC---cCCCCcEEEEEEEcc-ccCCCcEEEEEECCeEccCcccCceEEC
Confidence 87652 3333332221 156766655443 678999999999983 23443 8999999998864321111111
Q ss_pred -Cc----EEEEEEcccCcCCceEEEEEEEeCceeeEEEE
Q psy2166 359 -FG----FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRA 392 (805)
Q Consensus 359 -~~----~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 392 (805)
++ ...|.|..+..+|+|.|+|.|.|..|......
T Consensus 275 ~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~ 313 (327)
T 2wng_A 275 KDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKS 313 (327)
T ss_dssp TTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEEE
T ss_pred CCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhh
Confidence 12 13588999999999999999999998765443
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=255.23 Aligned_cols=282 Identities=12% Similarity=0.131 Sum_probs=196.3
Q ss_pred CCCeEEecCCCCceecCCCcEEEEEEEecC--CCCCceEEEEECC--E-------------ec--CCCCceEEE-ecCcE
Q psy2166 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPK--NDPNLKIEWIFNG--K-------------PL--ELGSRFKTT-ADFGF 123 (805)
Q Consensus 64 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~--~~p~~~v~W~k~g--~-------------~i--~~~~~~~~~-~~~~~ 123 (805)
.+|.+.+..+..+.+.+|+.++|.|.+.+. +.+.+.|.|+|++ . .+ ....|+.+. .....
T Consensus 12 ~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 91 (331)
T 3u83_A 12 RDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTD 91 (331)
T ss_dssp ---------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSB
T ss_pred CCCcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCC
Confidence 345556666667899999999999998832 1256689999954 1 11 233566554 12234
Q ss_pred EEEEEcccccCCCeEEEEE-EEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCC
Q psy2166 124 VTLDLTEVYDRDQGIYTCR-AWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRP 202 (805)
Q Consensus 124 ~~L~I~~~~~~D~G~Y~C~-a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (805)
.+|.|.+++.+|+|.|+|. +.+..|.......|.|..++.+...
T Consensus 92 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~----------------------------------- 136 (331)
T 3u83_A 92 GTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIE----------------------------------- 136 (331)
T ss_dssp CCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEE-----------------------------------
T ss_pred ceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceee-----------------------------------
Confidence 4799999999999999998 5566788888888888765432111
Q ss_pred CceecccccccccCCC---ceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcC----eEEEEEcCCCCcccEE
Q psy2166 203 PQFTSEFQHLSNLSEG---EIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG----MVVLEILGTKIEDTGV 275 (805)
Q Consensus 203 p~~~~~~~~~~~v~~g---~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~ 275 (805)
... ....+.+| +.+.|.|.+. .+.|.+.+.|++++....... .....++ ...|.|.++..+|+|.
T Consensus 137 ----~~~-~~~~~~~g~~~~~~~l~C~~~-~~~p~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G~ 208 (331)
T 3u83_A 137 ----GTQ-AVLRAKKGQDDKVLVATCTSA-NGKPPSVVSWETRLKGEAEYQ--EIRNPNGTVTVISRYRLVPSREAHQQS 208 (331)
T ss_dssp ----ECS-SCEEECTTCCCCEEEEEEEEE-EEBSCCEEEEEESSCCEEEEE--EEECTTSCEEEEEEEEECCCGGGTTCE
T ss_pred ----cCC-CceeecCCCccceEEEEEEec-CCcCCceEEEEcCCCCccccc--eeECCCCcEEEEEEEEEEeccccCCCE
Confidence 111 11236677 8899999732 578889999999632211100 0011111 2469999999999999
Q ss_pred EEEEEEcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcE-EEEEECCEEccCCCceE
Q psy2166 276 YTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELK-VEWFHNGKPIFHKNRVK 354 (805)
Q Consensus 276 Y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~-v~W~~~g~~l~~~~~~~ 354 (805)
|+|.|.|..+..+.++.|.|. .+|.+...+.....+.+|+.++|.|.+. +.|.+. +.|++++..+.....
T Consensus 209 Y~C~a~n~~~~~~~~~~l~V~-----~~P~~~~~~~~~~~~~~g~~~~l~C~~~--g~p~p~~i~W~~~~~~~~~~~~-- 279 (331)
T 3u83_A 209 LACIVNYHMDRFKESLTLNVQ-----YEPEVTIEGFDGNWYLQRMDVKLTCKAD--ANPPATEYHWTTLNGSLPKGVE-- 279 (331)
T ss_dssp EEEEEEETTEEEEEEEECCEE-----EEEEEEEECCCSCCBTTCCCEEEEEEEE--EESCCCEEEEEETTBSCCTTEE--
T ss_pred EEEEEecCCCcceeeEEEEEe-----cCCeEEEecCCCceEeCCCeEEEEEeCc--CCCCCCEEEEEECCCcccccce--
Confidence 999999999988888888876 3555554444444488999999999998 778887 999999988864421
Q ss_pred EEEeCcEEEEEEc-ccCcCCceEEEEEEEeCceeeEEEEEEEEEeccc
Q psy2166 355 MVSDFGFVVMDIA-YVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGG 401 (805)
Q Consensus 355 ~~~~~~~~~l~i~-~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~ 401 (805)
. .+. +|.|. ++..+|+|.|+|.|.|..|.....+.|.|...+.
T Consensus 280 ~--~~~--~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 323 (331)
T 3u83_A 280 A--QNR--TLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAAA 323 (331)
T ss_dssp E--ETT--EEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC---
T ss_pred e--cCc--EEEEeCCCccccCeEEEEEEEeccccceEEEEEEEeccch
Confidence 1 223 58899 8999999999999999999999999998876543
|
| >3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-27 Score=239.61 Aligned_cols=242 Identities=17% Similarity=0.220 Sum_probs=183.4
Q ss_pred CceecccccccccCCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEE
Q psy2166 203 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 281 (805)
Q Consensus 203 p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~-~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 281 (805)
|.|...+... .+.+|+.+.|.|.+ .+.|.+ .+.|+|+|..+.... ..|.|.+++.+|+|.|+|.+.
T Consensus 2 P~i~~~p~~~-~v~~G~~v~l~C~~--~~~~~~~~~~W~~~g~~~~~~~----------~~l~i~~~~~~d~G~Y~C~~~ 68 (262)
T 3rjd_A 2 AVITLQPPWV-SVFQEETVTLHCEV--LHLPGSSSTQWFLNGTATQTST----------PSYRITSASVNDSGEYRCQRG 68 (262)
T ss_dssp CEEEESSCCS-EEETTCCEEEEEEC--SSCCCTTCEEEEETTEECSCCS----------SEEEESSCCGGGCEEEEEEES
T ss_pred CeEecCCCcE-EeeCCCeEEEEEEC--CCCCCCceEEEEECCEEeeccC----------CeEEEecCCcccCeEEEEEEe
Confidence 5666666664 47899999999988 667766 999999999886542 269999999999999999999
Q ss_pred cCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCcE
Q psy2166 282 NKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361 (805)
Q Consensus 282 n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~ 361 (805)
|..+.. .+.+.|. .++. ...+.... +.+|+.+.|.|.+.. +.|.+.+.|+++|..+... .. .
T Consensus 69 ~~~~s~--~~~l~v~-----~~~~-~~~~~~~~-~~~g~~v~l~C~~~~-~~p~~~v~W~~~g~~~~~~------~~--~ 130 (262)
T 3rjd_A 69 LSGRSD--PIQLEIH-----RGWL-LLQVSSRV-FTEGEPLALRCHAWK-DKLVYNVLYYRNGKAFKFF------HW--N 130 (262)
T ss_dssp SSCCCC--CEEEEEE-----CSSE-EEEESCSE-EETTSCEEEEEEEGG-GCCCEEEEEEETTEEEEEE------EE--C
T ss_pred cCCccc--cEEEEEe-----ccce-EecCCCeE-EecCCeEEEEEEccC-CCCCceEEEEECCcccccc------CC--C
Confidence 876554 3455554 2333 22333333 779999999999942 7888999999999887421 11 2
Q ss_pred EEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceee
Q psy2166 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFIT 441 (805)
Q Consensus 362 ~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (805)
..|.|.++..+|+|.|+|.|.|..+.....+.|.|...
T Consensus 131 ~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~------------------------------------------ 168 (262)
T 3rjd_A 131 SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKEL------------------------------------------ 168 (262)
T ss_dssp CCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECS------------------------------------------
T ss_pred CeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccC------------------------------------------
Confidence 25899999999999999999999988877788877532
Q ss_pred eecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEe
Q psy2166 442 QISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLT 521 (805)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~ 521 (805)
..+|.+.... . ..+.+|+.++|.|.+.
T Consensus 169 ---------------------------------------------------~~~p~~~~~~-~-~~~~~g~~~~l~C~~~ 195 (262)
T 3rjd_A 169 ---------------------------------------------------FPAPVLNASV-T-SPLLEGNLVTLSCETK 195 (262)
T ss_dssp ---------------------------------------------------SCCCEEEESS-C-SSEETTCCEEEEEECC
T ss_pred ---------------------------------------------------CCCCeEeecC-c-eeecCCCeEEEEeEcc
Confidence 1234444443 2 2378999999999999
Q ss_pred eCCCCC-c----EEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcce
Q psy2166 522 PVTDPD-L----VVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD 580 (805)
Q Consensus 522 ~~g~p~-~----~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 580 (805)
+.|. + .+.|+++|..+... .....|.|.+++.+|+|.|+|.|.|..|..
T Consensus 196 --~~p~~p~~~~~~~w~~~~~~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~ 249 (262)
T 3rjd_A 196 --LLLQRPGLQLYFSFYMGSKTLRGR--------NTSSEYQILTARREDSGLYWCEAATEDGNV 249 (262)
T ss_dssp --CCCC-----EEEEEEETTEEEEEE--------ESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred --cCCCCCCccEEEEEEeCCcEeccc--------CCCceEEEEEechhhCeEEEEEEEcccCce
Confidence 4443 3 47899999977422 233469999999999999999999999975
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-26 Score=247.17 Aligned_cols=339 Identities=16% Similarity=0.187 Sum_probs=227.6
Q ss_pred CeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEEC--CEEccC-----CCceEEEEeCcEEEEEEcccCcCCceE
Q psy2166 304 PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHN--GKPIFH-----KNRVKMVSDFGFVVMDIAYVQSHDSGE 376 (805)
Q Consensus 304 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--g~~l~~-----~~~~~~~~~~~~~~l~i~~v~~~d~G~ 376 (805)
|.+.. +.+.. +.+|+.++|.|.+. +.|.+.|.|+|+ |..+.. ..++.+..+.....|.|.++..+|+|.
T Consensus 2 P~i~~-~~~~~-~~~G~~v~l~C~~~--g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~ 77 (389)
T 2jll_A 2 PHIIQ-LKNET-TYENGQVTLVCDAE--GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR 77 (389)
T ss_dssp CEEEE-CCCEE-EETTSEEEEEEEEE--CSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEE
T ss_pred CeEEe-cCceE-EeCCCeEEEEEEee--cccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEE
Confidence 44444 33333 77899999999998 899999999999 888864 456777666677789999999999999
Q ss_pred EEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEE
Q psy2166 377 YVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAH 456 (805)
Q Consensus 377 Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (805)
|+|.|.|..|.....+.|.|..+|
T Consensus 78 Y~C~a~n~~g~~~~~~~l~V~~~P-------------------------------------------------------- 101 (389)
T 2jll_A 78 YDCEAASRIGGHQKSMYLDIEYAP-------------------------------------------------------- 101 (389)
T ss_dssp EEEEEECSSCEEEEEEEEEEEEEE--------------------------------------------------------
T ss_pred EEEEEEeCCCCcceEEEEEEEeCC--------------------------------------------------------
Confidence 999999999998888888886433
Q ss_pred EEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECC
Q psy2166 457 FEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNG 536 (805)
Q Consensus 457 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g 536 (805)
.+.... ....+.+|+.++|.|.+. |.|.+.++|+|+|
T Consensus 102 ----------------------------------------~~~~~~-~~~~~~~g~~~~l~C~~~--g~p~~~i~W~~~g 138 (389)
T 2jll_A 102 ----------------------------------------KFISNQ-TIYYSWEGNPINISCDVK--SNPPASIHWRRDK 138 (389)
T ss_dssp ----------------------------------------EECCSC-CEEEECTTCCEEEEECEE--EESCCEEEEEETT
T ss_pred ----------------------------------------EEecCc-ceEEeccCCEEEEEEEEE--ecCCCeEEEEECC
Confidence 222221 122378999999999999 6688999999999
Q ss_pred EEccCCC--ceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeeeeee--------------eecC--
Q psy2166 537 KKLPHGH--RYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNL--------------ILES-- 598 (805)
Q Consensus 537 ~~l~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~--------------~~~~-- 598 (805)
..+.... ++.+..++....|.|.++..+|+|.|+|.|.|..|.....+.|.+...+.. .+.+
T Consensus 139 ~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~ 218 (389)
T 2jll_A 139 LVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNK 218 (389)
T ss_dssp EESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEEEEEECSSCEEEEEEC
T ss_pred ccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceEEeeccCCEEEEEEeC
Confidence 9997653 677776777788999999999999999999999999988888877544321 1111
Q ss_pred C-----CC----eEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeecccccc
Q psy2166 599 Q-----LP----EVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLIL 669 (805)
Q Consensus 599 ~-----~p----~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~ 669 (805)
| .| .+.|.+++.. ....+...+....|.|.++...+.|.|+|.|.|..|....+..+.+...+.
T Consensus 219 p~~~~g~pi~~y~v~~~~~~~~----~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~--- 291 (389)
T 2jll_A 219 PDSHGGVPIHHYQVDVKEVASE----IWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPV--- 291 (389)
T ss_dssp CSCCTTSCEEEEEEEEEETTCS----CCEEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCCC---
T ss_pred CCCCCCcceEEEEEEEEECCCc----ccEEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecCC---
Confidence 0 01 2344443321 111222223334699999999999999999999999876555554443110
Q ss_pred ccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecC-CCCe--EEEEEECCEEccCCCCeEEEee
Q psy2166 670 ESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG-DQTM--TVEFLYNGKPIEASHRIRTVHA 746 (805)
Q Consensus 670 ~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g-~p~~--~v~W~~~g~~l~~~~~~~~~~~ 746 (805)
. |+ .+|.+.. ....+..+.|....-..+ .|.. .|.|...+.. .........
T Consensus 292 --~-~p--------------~~p~~~~------~~~~~~~v~l~W~~p~~~~~~i~~Y~v~~~~~~~~---~~~~~~~~~ 345 (389)
T 2jll_A 292 --R-EP--------------SPPSIHG------QPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKE---DQWLEKKVQ 345 (389)
T ss_dssp --C-CC--------------CCCCEEE------EEETTTEEEEEECCCCCCSSCCCEEEEEEEC--------CCBCCEEC
T ss_pred --C-CC--------------CCCcccc------ccCcCCEEEEEEECCCCCCCcccEEEEEEEeCCCC---cceeEeecc
Confidence 0 00 3444322 122456677777642111 1222 2333332211 000001112
Q ss_pred CcEEEEEEcCCCCCCCEEEEEEEEcCCccEEE
Q psy2166 747 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 778 (805)
Q Consensus 747 ~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~ 778 (805)
.....+.|.++.....-.+++.|.|..|....
T Consensus 346 ~~~~~~~i~~L~~~t~Y~~~V~A~n~~G~s~~ 377 (389)
T 2jll_A 346 GNKDHIILEHLQWTMGYEVQITAANRLGYSEP 377 (389)
T ss_dssp TTCCEEEECSCCTTCEEEEEEEEEC-CCBCCC
T ss_pred CCcceEEeCCcCCCCEEEEEEEEEcCCcCCCc
Confidence 22335788999998889999999999996433
|
| >2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=250.68 Aligned_cols=274 Identities=13% Similarity=0.171 Sum_probs=175.6
Q ss_pred ceecccccccccCCCceEEEEEEEeeCCC-CCeEEEEEECCEEcc---------CCCcEEEEEE-----cCeEEEEEcCC
Q psy2166 204 QFTSEFQHLSNLSEGEIAHFEASLIPVGD-QTMTVEFLYNGKPIE---------ASHRIRTVHA-----FGMVVLEILGT 268 (805)
Q Consensus 204 ~~~~~~~~~~~v~~g~~~~l~C~~~~~~~-p~~~i~W~k~g~~l~---------~~~~~~~~~~-----~~~~~L~i~~~ 268 (805)
.|...+... .+.+|+.+.|.|.+ .+. |.+.|.|+|++..+. ...++..... .+...|.|.++
T Consensus 5 ~v~~~p~~~-~v~~G~~v~L~C~~--~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v 81 (327)
T 2wng_A 5 QVIQPDKSV-SVAAGESAILHCTV--TSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNI 81 (327)
T ss_dssp CEECCCSEE-EEETTSCEEECCEE--SCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSC
T ss_pred EEEcCCCce-EEecCCcEEEEEEc--cCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccC
Confidence 344444443 48899999999998 565 778999999975421 0113332211 33457999999
Q ss_pred CCcccEEEEEEEEcCCeeE-----EEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCc--EEEEE
Q psy2166 269 KIEDTGVYTCRATNKWGQA-----EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPEL--KVEWF 341 (805)
Q Consensus 269 ~~~d~G~Y~C~~~n~~g~~-----~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~--~v~W~ 341 (805)
+.+|+|.|+|.+.|..+.. ...+.|.|...+ .+|.+. .+ . ..+.+|+.+.|.|.+. +.|.+ .+.|+
T Consensus 82 ~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p--~~p~i~-~~-~-~~~~~g~~~~l~C~~~--g~p~~~~~v~W~ 154 (327)
T 2wng_A 82 TPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKP--SAPVVS-GP-A-ARATPQHTVSFTCESH--GFSPRDITLKWF 154 (327)
T ss_dssp CGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCC--CCCEEE-CC-S-SCBCTTCEEEEEEEEE--EEBSSCCEEEEE
T ss_pred ccccCeEEEEEeecCCCcceeEeecCcEEEEEEecC--CCceee-cc-c-cccCCCCEEEEEEEEe--CccCCCcEEEEE
Confidence 9999999999999976531 134566666532 344444 22 2 3378999999999998 44443 99999
Q ss_pred ECCEEccCCCceEEEE-eCc----EEEEEEcccCcCCceEEEEEEEeCceee-EEEEEEEEEecccccccCCChhHHHHH
Q psy2166 342 HNGKPIFHKNRVKMVS-DFG----FVVMDIAYVQSHDSGEYVCRAWNKYGED-FTRATIKCFGKGGVYLDSLQPESLARI 415 (805)
Q Consensus 342 ~~g~~l~~~~~~~~~~-~~~----~~~l~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~p~~~~~~ 415 (805)
++|+.+.......... .++ ...|.|.....+|.|.|+|.|.|..+.. .......+
T Consensus 155 k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~------------------- 215 (327)
T 2wng_A 155 KNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANL------------------- 215 (327)
T ss_dssp ETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEG-------------------
T ss_pred ECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEe-------------------
Confidence 9999987443211100 111 1247777777777899999999987752 11111111
Q ss_pred HHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCC
Q psy2166 416 RELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEA 495 (805)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~ 495 (805)
.+.+..+
T Consensus 216 -------------------------------------------------------------------------~~~v~~~ 222 (327)
T 2wng_A 216 -------------------------------------------------------------------------SETIRVP 222 (327)
T ss_dssp -------------------------------------------------------------------------GGTBCBC
T ss_pred -------------------------------------------------------------------------ccccCCC
Confidence 1123567
Q ss_pred CceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCC--ceEEEeeCC---EEEEEEccCCCCCCEEEE
Q psy2166 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGH--RYRTFHDFG---IVILDILYCYEENSGVYE 570 (805)
Q Consensus 496 P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~--~~~~~~~~~---~~~L~i~~v~~~d~G~Y~ 570 (805)
|.+...... +.+|+.++|.|.+.+...|...|+|+|||+.+..+. ++....++. .+.|.|..+..+|+|.|+
T Consensus 223 P~i~~~~~~---~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~ 299 (327)
T 2wng_A 223 PTLEVTQQP---VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLT 299 (327)
T ss_dssp CEEEEEEEC---CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------CCEEE
T ss_pred CEEEEecCC---cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCCCEEE
Confidence 777765444 789999999999995322333899999999986432 121111221 246899999999999999
Q ss_pred EEEEcCCcceEE
Q psy2166 571 CRATNKYGSDVT 582 (805)
Q Consensus 571 C~a~n~~g~~~~ 582 (805)
|.|.|..|....
T Consensus 300 C~a~N~~~~~~s 311 (327)
T 2wng_A 300 CQVEHDGQPAVS 311 (327)
T ss_dssp EEEEETTCCCEE
T ss_pred EEEEeCCCCCch
Confidence 999999987643
|
| >3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-28 Score=253.96 Aligned_cols=274 Identities=16% Similarity=0.197 Sum_probs=190.9
Q ss_pred CCceecccccccccCCCceEEEEEEEeeCCC----CCeEEEEEECC--EE-------------c--cCCCcEEEE-EEcC
Q psy2166 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGD----QTMTVEFLYNG--KP-------------I--EASHRIRTV-HAFG 259 (805)
Q Consensus 202 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~----p~~~i~W~k~g--~~-------------l--~~~~~~~~~-~~~~ 259 (805)
+|.+....+....+.+|+.++|.|.+ .+. +.+.+.|+|++ .. + ....++... ...+
T Consensus 13 ~~~~~~~~~~~~~v~~G~~v~L~C~~--~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~ 90 (331)
T 3u83_A 13 DPSQVVQVNDSMYGFIGTDVVLHCSF--ANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFT 90 (331)
T ss_dssp --------CEEEEEETTCCEEECCBC--SSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSS
T ss_pred CCcceEEcCCcEEEEecCCEEEeeec--CCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCC
Confidence 34444333334468899999999987 444 55789999954 11 1 122343332 1223
Q ss_pred eEEEEEcCCCCcccEEEEEE-EEcCCeeEEEEEEEEEeccCCCCCCeEEec-CCCcccccCC---CeEEEEEE-EeecCC
Q psy2166 260 MVVLEILGTKIEDTGVYTCR-ATNKWGQAEISVNLECVDKSKGQPPKFTSH-IKSLEGLKDG---DSAHFECT-LTPVND 333 (805)
Q Consensus 260 ~~~L~i~~~~~~d~G~Y~C~-~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~-~~~~~~~~~g---~~~~l~C~-~~~~~~ 333 (805)
...|.|.+++.+|+|.|+|. +.+..+.....+.|.|.. +|.+... ......+.+| +.+.|.|. .. +.
T Consensus 91 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~-----~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~--~~ 163 (331)
T 3u83_A 91 DGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMA-----KPTNWIEGTQAVLRAKKGQDDKVLVATCTSAN--GK 163 (331)
T ss_dssp BCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEB-----CCEEEEEECSSCEEECTTCCCCEEEEEEEEEE--EB
T ss_pred CceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEec-----CCcceeecCCCceeecCCCccceEEEEEEecC--Cc
Confidence 45799999999999999998 556677788888888874 4444322 2233336777 78999998 55 78
Q ss_pred CCcEEEEEECC--EEcc-----CCCceEEEEeCcEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccC
Q psy2166 334 PELKVEWFHNG--KPIF-----HKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDS 406 (805)
Q Consensus 334 p~~~v~W~~~g--~~l~-----~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~ 406 (805)
|.+.+.|++++ .... ....+.+ ...|.|..+..+|+|.|+|.|.|..|.....+.|.|..
T Consensus 164 p~~~i~W~~~~~~~~~~~~~~~~~~~~~~-----~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~-------- 230 (331)
T 3u83_A 164 PPSVVSWETRLKGEAEYQEIRNPNGTVTV-----ISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQY-------- 230 (331)
T ss_dssp SCCEEEEEESSCCEEEEEEEECTTSCEEE-----EEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEE--------
T ss_pred CCceEEEEcCCCCccccceeECCCCcEEE-----EEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEec--------
Confidence 89999999953 2211 1111111 13588999999999999999999999887777777643
Q ss_pred CChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcc
Q psy2166 407 LQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPV 486 (805)
Q Consensus 407 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ 486 (805)
T Consensus 231 -------------------------------------------------------------------------------- 230 (331)
T 3u83_A 231 -------------------------------------------------------------------------------- 230 (331)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcE-EEEEECCEEccCCCceEEEeeCCEEEEEEc-cCCCC
Q psy2166 487 AQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLV-VEWFYNGKKLPHGHRYRTFHDFGIVILDIL-YCYEE 564 (805)
Q Consensus 487 ~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~-v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~-~v~~~ 564 (805)
+|.+.........+.+|+.++|.|.+. +.|.|. ++|+++|..+..... ..++ .|.|. ++..+
T Consensus 231 --------~P~~~~~~~~~~~~~~g~~~~l~C~~~--g~p~p~~i~W~~~~~~~~~~~~----~~~~--~L~i~~~v~~~ 294 (331)
T 3u83_A 231 --------EPEVTIEGFDGNWYLQRMDVKLTCKAD--ANPPATEYHWTTLNGSLPKGVE----AQNR--TLFFKGPINYS 294 (331)
T ss_dssp --------EEEEEEECCCSCCBTTCCCEEEEEEEE--EESCCCEEEEEETTBSCCTTEE----EETT--EEEECSCCCGG
T ss_pred --------CCeEEEecCCCceEeCCCeEEEEEeCc--CCCCCCEEEEEECCCcccccce----ecCc--EEEEeCCCccc
Confidence 344444333333488999999999998 567777 999999998865421 1223 59999 89999
Q ss_pred CCEEEEEEEEcCCcceEEEEEEEEeeeee
Q psy2166 565 NSGVYECRATNKYGSDVTKASLKCVSKTN 593 (805)
Q Consensus 565 d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~ 593 (805)
|+|.|+|.|.|..|.....+.|.|...+.
T Consensus 295 d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 323 (331)
T 3u83_A 295 LAGTYICEATNPIGTRSGQVEVNITEAAA 323 (331)
T ss_dssp GCEEEEEEEEETTEEEEEEEEECCBC---
T ss_pred cCeEEEEEEEeccccceEEEEEEEeccch
Confidence 99999999999999999999999887654
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-28 Score=249.38 Aligned_cols=275 Identities=17% Similarity=0.215 Sum_probs=195.6
Q ss_pred CCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEE
Q psy2166 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRA 143 (805)
Q Consensus 64 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 143 (805)
.+|.+...+ ..+.+.+|+.++|.|.+. +. |.|++++. .++.+..++...+|.|.+++.+|+|.|+|.+
T Consensus 3 ~~P~i~~~~-~~~~v~~G~~v~L~C~~~--~~----v~W~~~~~-----~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 70 (292)
T 4dkd_C 3 SIPVIEPSV-PELVVKPGATVTLRCVGN--GS----VEWDGPPS-----PHWTLYSDGSSSILSTNNATFQNTGTYRCTE 70 (292)
T ss_dssp -CCEEESCC-SSCEECTTCCEEEEEECS--SC----CCBCCCCC-----SSCEECCBTTEEEEEESSCCGGGCSCEEECC
T ss_pred CCceecCCC-CeEEEcCCCcEEEEEcCC--Cc----eEEccCCC-----CceEEeccCceEEEEEcccccccCEEEEEEE
Confidence 356665544 477999999999999987 32 99997653 2445555666779999999999999999999
Q ss_pred EeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEE
Q psy2166 144 WNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF 223 (805)
Q Consensus 144 ~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l 223 (805)
.|..|.......|.|..++. .+...+.. ..+.+|+.+.|
T Consensus 71 ~n~~~~~~~~~~l~V~~~~~----------------------------------------~~~~~~~~-~~v~~g~~v~l 109 (292)
T 4dkd_C 71 PGDPLGGSAAIHLYVKDPAR----------------------------------------PWNVLAQE-VVVFEDQDALL 109 (292)
T ss_dssp CC----CCEEECCEECCSSC----------------------------------------CEEESCSE-EEEETTSCEEC
T ss_pred ccCCCCcceEEEEEEcCccc----------------------------------------cccccCCe-EEEcCCCcEEE
Confidence 99887777777777764321 11222222 24779999999
Q ss_pred EEEEeeCCCCC--eEEEEEEC-CEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeE-EEEEEEEEeccC
Q psy2166 224 EASLIPVGDQT--MTVEFLYN-GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA-EISVNLECVDKS 299 (805)
Q Consensus 224 ~C~~~~~~~p~--~~i~W~k~-g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~-~~~~~l~v~~~~ 299 (805)
.|.+ .+ |. +.+.|+++ +..+....++...... .|.|.+++.+|+|.|+|.+.|..+.. +..+.|.|....
T Consensus 110 ~C~~--~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~ 183 (292)
T 4dkd_C 110 PCLL--TD-PVLEAGVSLVRVRGRPLMRHTNYSFSPWH---GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVI 183 (292)
T ss_dssp CEEE--SS-GGGGSSEEEEEGGGCCCCSSCCEECCSSS---CCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCC
T ss_pred eeeC--CC-CCcceeEEEEecCCCccccCCcccccCCc---eEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCC
Confidence 9998 44 43 78999997 6666555554332222 39999999999999999999887755 336777776422
Q ss_pred CCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEe--CcEEEEEEcccCcCCceEE
Q psy2166 300 KGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD--FGFVVMDIAYVQSHDSGEY 377 (805)
Q Consensus 300 ~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~--~~~~~l~i~~v~~~d~G~Y 377 (805)
. .+|.+...+.... +.+|+.+.|.|.+.+ ..+.+.+.|++++..+........... .....|.|.++..+|+|.|
T Consensus 184 ~-~~p~i~~~~~~~~-~~~g~~v~l~C~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 260 (292)
T 4dkd_C 184 P-GPPALTLVPAELV-RIRGEAAQIVCSASS-VDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNY 260 (292)
T ss_dssp C-SSCEEEEESSCBC-CCSSSCEEEEEEEEE-SSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEE
T ss_pred C-CCCeEEccCCcee-EecCCCEEEEEEecC-CCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEE
Confidence 1 2677777666554 679999999999984 345578999999887754333222111 1234799999999999999
Q ss_pred EEEEEeCceeeEEEEEEEEEecc
Q psy2166 378 VCRAWNKYGEDFTRATIKCFGKG 400 (805)
Q Consensus 378 ~C~a~n~~g~~~~~~~l~V~~~~ 400 (805)
+|.|.|..|.....+.|.|....
T Consensus 261 ~C~a~N~~g~~~~~~~l~V~~~~ 283 (292)
T 4dkd_C 261 SCVASNVQGKHSTSMFFRVVESA 283 (292)
T ss_dssp EEEEECSSCEEEEEEEECC----
T ss_pred EEEEecCCCCceeEEEEEEeeCC
Confidence 99999999999999999887543
|
| >4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-28 Score=249.38 Aligned_cols=276 Identities=17% Similarity=0.226 Sum_probs=198.1
Q ss_pred CCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEE
Q psy2166 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 280 (805)
Q Consensus 201 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 280 (805)
.+|.|...+... .+.+|+.++|.|.+ .+. +.|++++.. ............|.|.+++.+|+|.|+|.+
T Consensus 3 ~~P~i~~~~~~~-~v~~G~~v~L~C~~--~~~----v~W~~~~~~-----~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 70 (292)
T 4dkd_C 3 SIPVIEPSVPEL-VVKPGATVTLRCVG--NGS----VEWDGPPSP-----HWTLYSDGSSSILSTNNATFQNTGTYRCTE 70 (292)
T ss_dssp -CCEEESCCSSC-EECTTCCEEEEEEC--SSC----CCBCCCCCS-----SCEECCBTTEEEEEESSCCGGGCSCEEECC
T ss_pred CCceecCCCCeE-EEcCCCcEEEEEcC--CCc----eEEccCCCC-----ceEEeccCceEEEEEcccccccCEEEEEEE
Confidence 568888777665 58999999999987 442 999976532 223333445678999999999999999999
Q ss_pred EcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCC--cEEEEEEC-CEEccCCCceEEEE
Q psy2166 281 TNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE--LKVEWFHN-GKPIFHKNRVKMVS 357 (805)
Q Consensus 281 ~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~--~~v~W~~~-g~~l~~~~~~~~~~ 357 (805)
.|..+..+..+.|.|... +..+...+.. ..+.+|+.+.|.|.+. + |. +.+.|+++ +..+....++....
T Consensus 71 ~n~~~~~~~~~~l~V~~~----~~~~~~~~~~-~~v~~g~~v~l~C~~~--~-~~~~~~v~W~~~~~~~~~~~~~~~~~~ 142 (292)
T 4dkd_C 71 PGDPLGGSAAIHLYVKDP----ARPWNVLAQE-VVVFEDQDALLPCLLT--D-PVLEAGVSLVRVRGRPLMRHTNYSFSP 142 (292)
T ss_dssp CC----CCEEECCEECCS----SCCEEESCSE-EEEETTSCEECCEEES--S-GGGGSSEEEEEGGGCCCCSSCCEECCS
T ss_pred ccCCCCcceEEEEEEcCc----cccccccCCe-EEEcCCCcEEEeeeCC--C-CCcceeEEEEecCCCccccCCcccccC
Confidence 998877777888887642 2223333333 3488999999999997 4 43 78999997 66665555554433
Q ss_pred eCcEEEEEEcccCcCCceEEEEEEEeCceeeEE-EEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCC
Q psy2166 358 DFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFT-RATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEA 436 (805)
Q Consensus 358 ~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (805)
+.. |.|.++..+|+|.|+|.|.|..+.... .+.|.|...
T Consensus 143 ~~~---L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~------------------------------------- 182 (292)
T 4dkd_C 143 WHG---FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKV------------------------------------- 182 (292)
T ss_dssp SSC---CEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECC-------------------------------------
T ss_pred Cce---EEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCC-------------------------------------
Confidence 333 889999999999999999988775544 667776421
Q ss_pred CceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEE
Q psy2166 437 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHF 516 (805)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L 516 (805)
...+|.+...+.... +.+|+.++|
T Consensus 183 -------------------------------------------------------~~~~p~i~~~~~~~~-~~~g~~v~l 206 (292)
T 4dkd_C 183 -------------------------------------------------------IPGPPALTLVPAELV-RIRGEAAQI 206 (292)
T ss_dssp -------------------------------------------------------CCSSCEEEEESSCBC-CCSSSCEEE
T ss_pred -------------------------------------------------------CCCCCeEEccCCcee-EecCCCEEE
Confidence 124677776665544 679999999
Q ss_pred EEEEeeCCCCCcEEEEEECCEEccCCCceEEEee--CCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeeeee
Q psy2166 517 EARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD--FGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTN 593 (805)
Q Consensus 517 ~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~ 593 (805)
.|.+.+ ..+.+.+.|++++..+........... .....|.|.+++.+|+|.|+|.|.|..|..+..+.|.|.....
T Consensus 207 ~C~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~ 284 (292)
T 4dkd_C 207 VCSASS-VDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAG 284 (292)
T ss_dssp EEEEEE-SSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC-----
T ss_pred EEEecC-CCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeCCC
Confidence 999996 356678999999987754433222111 1234799999999999999999999999999999998876543
|
| >2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-25 Score=239.10 Aligned_cols=270 Identities=19% Similarity=0.184 Sum_probs=201.3
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEecCC-----CCceEEEecCcEEEEEEcccccCCCe
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPLEL-----GSRFKTTADFGFVTLDLTEVYDRDQG 137 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i~~-----~~~~~~~~~~~~~~L~I~~~~~~D~G 137 (805)
+|.++. ++ +..+.+|+.++|.|.+. |.|.+.|+|+|+ |..+.. +.++.+..+.+..+|.|.+++.+|+|
T Consensus 1 ~P~i~~-~~-~~~~~~G~~v~l~C~~~--g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G 76 (389)
T 2jll_A 1 QPHIIQ-LK-NETTYENGQVTLVCDAE--GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSG 76 (389)
T ss_dssp CCEEEE-CC-CEEEETTSEEEEEEEEE--CSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCE
T ss_pred CCeEEe-cC-ceEEeCCCeEEEEEEee--cccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCE
Confidence 366665 33 56888999999999999 788999999999 888865 46788877777789999999999999
Q ss_pred EEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCC
Q psy2166 138 IYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 217 (805)
Q Consensus 138 ~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~ 217 (805)
.|+|.|.|..|.....+.|.|..++. |...+.. ..+.+
T Consensus 77 ~Y~C~a~n~~g~~~~~~~l~V~~~P~-----------------------------------------~~~~~~~-~~~~~ 114 (389)
T 2jll_A 77 RYDCEAASRIGGHQKSMYLDIEYAPK-----------------------------------------FISNQTI-YYSWE 114 (389)
T ss_dssp EEEEEEECSSCEEEEEEEEEEEEEEE-----------------------------------------ECCSCCE-EEECT
T ss_pred EEEEEEEeCCCCcceEEEEEEEeCCE-----------------------------------------EecCcce-EEecc
Confidence 99999999999988888898875543 2222111 23679
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCC--cEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEE
Q psy2166 218 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH--RIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 295 (805)
Q Consensus 218 g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~--~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v 295 (805)
|+.+.|.|.+ .+.|.+.+.|+|+|..+.... ++.+........|.|.++..+|+|.|+|.|.|..|.....+.+.+
T Consensus 115 g~~~~l~C~~--~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v 192 (389)
T 2jll_A 115 GNPINISCDV--KSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILAL 192 (389)
T ss_dssp TCCEEEEECE--EEESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCEEEEEEEE--EecCCCeEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence 9999999988 577889999999999997654 566555556789999999999999999999999999888888777
Q ss_pred eccCCCCCCe-EEecCCCcccccCCCeEEEEEEEee--cCCCCc--EEEEEECCEEccCCCceEEEEeCcEEEEEEcccC
Q psy2166 296 VDKSKGQPPK-FTSHIKSLEGLKDGDSAHFECTLTP--VNDPEL--KVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQ 370 (805)
Q Consensus 296 ~~~~~~~~p~-~~~~~~~~~~~~~g~~~~l~C~~~~--~~~p~~--~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~ 370 (805)
...+ .+|. +... ...+..+.|.|.... .+.|.. .+.|.+++.... ..+........+.|.++.
T Consensus 193 ~~~P--~~P~~~~~~------~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~~----~~~~~~~~~~~~~i~~l~ 260 (389)
T 2jll_A 193 ADVP--SSPYGVKII------ELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIW----KIVRSHGVQTMVVLNNLE 260 (389)
T ss_dssp CCCC--CCCEEEEEE------EECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSCC----EEEECSTTCSEEEECSCC
T ss_pred cCCC--CCCcceEEe------eccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCccc----EEeeccCCcceEEECCcc
Confidence 5433 2332 1111 223567889887421 122332 577887764211 112222233468899999
Q ss_pred cCCceEEEEEEEeCceeeEEEEEE
Q psy2166 371 SHDSGEYVCRAWNKYGEDFTRATI 394 (805)
Q Consensus 371 ~~d~G~Y~C~a~n~~g~~~~~~~l 394 (805)
..+.|.|+|.|.|..|....+..+
T Consensus 261 ~~~~y~~~v~A~N~~G~~~~s~~~ 284 (389)
T 2jll_A 261 PNTTYEIRVAAVNGKGQGDYSKIE 284 (389)
T ss_dssp TTCEEEEEEEEEESSCBCCCCCCE
T ss_pred CCCEEEEEEEEEcCCccCCCCcce
Confidence 999999999999999876544333
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-27 Score=249.78 Aligned_cols=280 Identities=11% Similarity=0.073 Sum_probs=180.1
Q ss_pred CCCCcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeE
Q psy2166 59 PEETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 59 ~~~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 138 (805)
....+.+|.|...+. ..|.+|++++|.|.+. +. .+.+.|+|+|..+...... ......|.|.+++.+|+|.
T Consensus 18 ~~~~~~~P~i~~~p~--~~v~~G~~v~L~C~~~--~~-~~~~~W~k~g~~~~~~~~~----~~~~~~L~I~~v~~~D~G~ 88 (316)
T 3vh8_G 18 HMGGQDKPFLSAWPS--AVVPRGGHVTLRCHYR--HR-FNNFMLYKEDRIHIPIFHG----RIFQESFNMSPVTTAHAGN 88 (316)
T ss_dssp ------CCEEEEESC--SEEETTSCEEEEEEBT--TB-CCSEEEEESSCSSSCHHHH----CCBSSCEEECSCCGGGCEE
T ss_pred ccCCCCCCEeeccCC--CccCCCCCEEEEEEcc--CC-CceEEEEeCCCccceeecC----CcceEEEEECCCCcccCeE
Confidence 344567888887765 4788999999999998 34 6789999999876532110 1112279999999999999
Q ss_pred EEEEEEeCC-----eeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccccccc
Q psy2166 139 YTCRAWNLA-----GETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLS 213 (805)
Q Consensus 139 Y~C~a~n~~-----g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 213 (805)
|+|.|.|.. +.......|.|.... .+|.+...+...
T Consensus 89 Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~--------------------------------------~~p~~~~~~~~~- 129 (316)
T 3vh8_G 89 YTCRGSHPHSPTGWSAPSNPVVIMVTGNH--------------------------------------RKPSLLAHPGPL- 129 (316)
T ss_dssp EEEEEBCSSSSSSBCCCCCCEEEEEECSS--------------------------------------CCCEEEEESCSE-
T ss_pred EEEEEEcCCCCcceecCCCcEEEEEecCC--------------------------------------CCCeEEecCCCc-
Confidence 999998642 223344556664321 235555444332
Q ss_pred ccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEE-EEcCeEEEEEcCCCCcccEEEEEEEEcCCee-----E
Q psy2166 214 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTV-HAFGMVVLEILGTKIEDTGVYTCRATNKWGQ-----A 287 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~-----~ 287 (805)
+.+|+.++|.|.+ . .+.+.+.|+|+|..+......... .......|.|.+++.+|+|.|+|.|.|..+. .
T Consensus 130 -v~~G~~v~L~C~~--~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~ 205 (316)
T 3vh8_G 130 -VKSGERVILQCWS--D-IMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAP 205 (316)
T ss_dssp -EETTCCEEEEEEE--S-SCCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCC
T ss_pred -cCCCCeEEEEEcC--C-CCCcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCC
Confidence 7799999999987 3 345689999999877533211111 1123468999999999999999999998763 1
Q ss_pred EEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEE-EeCcEEEEEE
Q psy2166 288 EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV-SDFGFVVMDI 366 (805)
Q Consensus 288 ~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~-~~~~~~~l~i 366 (805)
+..+.|.|.... .+|.+...+.. .+.+|+.++|.|.+. .+.+.+.|+|+|..+......... .......|.|
T Consensus 206 s~~~~l~V~~~~--~~p~i~~~~~~--~v~~G~~v~L~C~~~---~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i 278 (316)
T 3vh8_G 206 SDPLDIVVTGPY--EKPSLSAQPGP--KVQAGESVTLSCSSR---SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPL 278 (316)
T ss_dssp CCCEEEEEECSS--CCCEEEEESCS--CCCTTSCCEEEEEES---SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEEC
T ss_pred CCCEEEEecCCC--CCCeEEeCCCC--eecCCCcEEEEEECC---CCCcEEEEEECCCcCCCceeceeccCCceeEEEEc
Confidence 344555554322 45666655443 378999999999994 477899999999876532111111 1112357999
Q ss_pred cccCcCCceEEEEEEEeCcee-----eEEEEEEEEEec
Q psy2166 367 AYVQSHDSGEYVCRAWNKYGE-----DFTRATIKCFGK 399 (805)
Q Consensus 367 ~~v~~~d~G~Y~C~a~n~~g~-----~~~~~~l~V~~~ 399 (805)
.++. |+|.|+|.|.|..+. .+..+.|.|.++
T Consensus 279 ~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~ 314 (316)
T 3vh8_G 279 GPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVSVTGN 314 (316)
T ss_dssp C-------CEEEEEEEBTTBTTEECCCCCCEEC-----
T ss_pred CCcC--CCEEEEEEeecCCCchhccCCCCcEEEEEeCC
Confidence 9998 999999999997663 233456666543
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.6e-26 Score=236.24 Aligned_cols=277 Identities=17% Similarity=0.243 Sum_probs=197.6
Q ss_pred CCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCC-CceEEEe-cCcEEEEEEcccccCCCeEEEE
Q psy2166 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG-SRFKTTA-DFGFVTLDLTEVYDRDQGIYTC 141 (805)
Q Consensus 64 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~-~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C 141 (805)
.+|.|+..+. ++.+.+|+.++|.|.+. +.|.+.|.|+|+|..+... .++.+.. +++..+|.|.+++.+|+|.|+|
T Consensus 3 ~~P~~~~~p~-~~~v~~G~~v~l~C~~~--g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 79 (305)
T 2nzi_A 3 MAPHFKEELR-NLNVRYQSNATLVCKVT--GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQV 79 (305)
T ss_dssp CCCEEEECCC-CEEECTTCCEEEEEEEE--CSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEE
T ss_pred CCCeeeeccc-ceEEeCCCcEEEEEEEe--CCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEE
Confidence 4688877665 78999999999999998 6888999999999998764 4666543 5667799999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceE
Q psy2166 142 RAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIA 221 (805)
Q Consensus 142 ~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~ 221 (805)
.|.|..|.......|.|..++.+. .|.+...+... .+.+|+.+
T Consensus 80 ~a~n~~g~~~~~~~l~V~~~p~~~------------------------------------~~~~~~~~~~~-~~~~g~~~ 122 (305)
T 2nzi_A 80 RATNQGGSVSGTASLEVEVPAKIH------------------------------------LPKTLEGMGAV-HALRGEVV 122 (305)
T ss_dssp EEEETTEEEEEEEEEEECEEEEEC------------------------------------CCHHHHSSCCE-EEETTCCE
T ss_pred EEEcCCCCccceEEEEEecCCccC------------------------------------CCccccccccE-EecCCCEE
Confidence 999999988888888887654321 12222222222 36789999
Q ss_pred EEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcC-CCCcccEEEEEEEEcCCeeEEEEEEEEEeccCC
Q psy2166 222 HFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILG-TKIEDTGVYTCRATNKWGQAEISVNLECVDKSK 300 (805)
Q Consensus 222 ~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~-~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~ 300 (805)
.|.|.+ .+.|.+.+.|++++..+....++..........|.|.+ +..+|+|.|+|.|.|..|.....+.|.|...+
T Consensus 123 ~l~C~~--~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P- 199 (305)
T 2nzi_A 123 SIKIPF--SGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVP- 199 (305)
T ss_dssp EEEEEE--EEESCCEEEEEESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCC-
T ss_pred EEEEEE--CCCCCCEEEEEECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCC-
Confidence 999998 57888999999999999887777776666678999999 99999999999999999999999999887644
Q ss_pred CCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEE-CCEEccCCCceEEEEeCcEEEEEEcccCcCCceEEEE
Q psy2166 301 GQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH-NGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVC 379 (805)
Q Consensus 301 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~-~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C 379 (805)
.+|...... ...+..+.|.|......... .+.++. ...+.. ...+..........|.|.++...+.|.|+|
T Consensus 200 -~~p~~~~~~-----~~~~~~v~l~w~~p~~~g~~-~i~~y~v~~~~~~-~~~w~~~~~~~~~~~~i~~l~~~~~y~~~~ 271 (305)
T 2nzi_A 200 -DPPRGVKVS-----DVSRDSVNLTWTEPASDGGS-KITNYIVEKCATT-AERWLRVGQARETRYTVINLFGKTSYQFRV 271 (305)
T ss_dssp -CCCEEEEEE-----SCCSSCEEEEEECCSCCSBS-CEEEEEEEEEETT-SCCEEEEEEESSSEEEECSCCSSCEEEEEE
T ss_pred -CCCCCceee-----eccCCEEEEEEcCCccCCCC-ceeEEEEEEecCC-CCccEECccccCceEEecCCCCCCeEEEEE
Confidence 233321110 12355566666542000001 111111 111111 111111111112258899999999999999
Q ss_pred EEEeCceeeEEE
Q psy2166 380 RAWNKYGEDFTR 391 (805)
Q Consensus 380 ~a~n~~g~~~~~ 391 (805)
.|.|..|....+
T Consensus 272 ~A~N~~G~~~~S 283 (305)
T 2nzi_A 272 IAENKFGLSKPS 283 (305)
T ss_dssp EEEETTEECCCC
T ss_pred EEEeCCcccCCc
Confidence 999999976544
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-27 Score=238.22 Aligned_cols=238 Identities=14% Similarity=0.153 Sum_probs=175.1
Q ss_pred ccCCCceEEEEEEEeeCC-CCCe--EEEEEECCEEccCCCcEEEEEEcCeEEEEEcCC---CCcccEE--EEEEEEcCCe
Q psy2166 214 NLSEGEIAHFEASLIPVG-DQTM--TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGT---KIEDTGV--YTCRATNKWG 285 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~-~p~~--~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~---~~~d~G~--Y~C~~~n~~g 285 (805)
.+.+|+.++|.|.+ .+ .|.+ ++.|+|+|..+.. .....++ .|.+... +.+|+|. |+|.+.|..+
T Consensus 14 ~v~~G~~v~l~C~~--~g~~p~p~~~v~W~k~~~~l~~----~~~~~~~--~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~ 85 (265)
T 2oz4_A 14 VLEVDTQGTVVCSL--DGLFPVSEAQVHLALGDQRLNP----TVTYGND--SFSAKASVSVTAEDEGTQRLTCAVILGNQ 85 (265)
T ss_dssp EEETTEEEEEEEEE--ESCSCGGGCEEEEEETTEECCC----EEEECSS--EEEEEEEEEECGGGCEEEEEEEEEEETTE
T ss_pred eEecCCCEEEEEEc--cCCCCCcceEEEEEeCCEECCc----eEeeCCC--eEEEEeecccccccCCcceEEEEEecCCC
Confidence 37899999999998 45 6666 9999999998865 2222222 3444433 7788884 9999999999
Q ss_pred eEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCcEEEEE
Q psy2166 286 QAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD 365 (805)
Q Consensus 286 ~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~ 365 (805)
..+..+.|.|... .+|.+.. .... +.+|+.++|.|.+ . |.+.++| +|..+.... ....|.
T Consensus 86 ~~~~~~~l~V~~~---p~p~~~~--~~~~-v~~G~~v~l~C~~---~-p~~~i~W--~g~~~~~~~--------~~~~l~ 145 (265)
T 2oz4_A 86 SQETLQTVTIYSF---PAPNVIL--TKPE-VSEGTEVTVKCEA---H-PRAKVTL--NGVPAQPLG--------PRAQLL 145 (265)
T ss_dssp EEEEEEEEEEECC---CCCEEEE--SCSE-EETTCEEEEEEEC---C-TTSEEEE--SSCSSSCCS--------SEECCE
T ss_pred CcEEEEEEEEeCC---CCceeec--CCce-ecCCCcEEEEEEc---c-CCCEEEE--CCEEccCCC--------CcEEEE
Confidence 9888888988753 2344443 2333 7789999999998 3 8899999 888774322 234588
Q ss_pred EcccCcCCceEEEEEEEeCc-eeeE---EEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceee
Q psy2166 366 IAYVQSHDSGEYVCRAWNKY-GEDF---TRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFIT 441 (805)
Q Consensus 366 i~~v~~~d~G~Y~C~a~n~~-g~~~---~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (805)
|..+..+|+|.|+|.|.|.. |... ..+.|.|..+|
T Consensus 146 i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p----------------------------------------- 184 (265)
T 2oz4_A 146 LKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGP----------------------------------------- 184 (265)
T ss_dssp EECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEE-----------------------------------------
T ss_pred EccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCC-----------------------------------------
Confidence 89999999999999998644 6554 55667765433
Q ss_pred eecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecC-CCcccccCCCeEEEEEEE
Q psy2166 442 QISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQI-SDVTQLKEGQSAHFEARL 520 (805)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~~~v~~G~~v~L~C~v 520 (805)
.+.... +....+.+|+.++|.|.+
T Consensus 185 -------------------------------------------------------~~~~~~~p~~~~v~~g~~~~l~C~~ 209 (265)
T 2oz4_A 185 -------------------------------------------------------RLDERDCPGNWTWPENSQQTPMCQA 209 (265)
T ss_dssp -------------------------------------------------------ECCGGGSCSEEEEETTCEECCCCCC
T ss_pred -------------------------------------------------------ccccccCCCccEEcCCCeEEEEeEC
Confidence 222111 222347899999999999
Q ss_pred eeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEee
Q psy2166 521 TPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVS 590 (805)
Q Consensus 521 ~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 590 (805)
. |.|.|.++|+|+|..+.... . | ..++.+|+|.|+|.|.|..|..+..+.|.|..
T Consensus 210 ~--g~P~p~i~W~~~~~~~~~~g--------~---~--~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 264 (265)
T 2oz4_A 210 W--GNPLPELKCLKDGTFPLPIG--------E---S--VTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264 (265)
T ss_dssp E--EESCCEEEEEETTTEECCTT--------S---C--EECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred c--cCCCCeEEEEECCcccCCCC--------c---E--EEeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence 8 67889999999997332221 1 1 23678999999999999999999999999875
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-26 Score=237.72 Aligned_cols=259 Identities=15% Similarity=0.129 Sum_probs=173.5
Q ss_pred ccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcC-eEEEEEcCCCCcccEEEEEEEEcCCee---EEE
Q psy2166 214 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG-MVVLEILGTKIEDTGVYTCRATNKWGQ---AEI 289 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~-~~~L~i~~~~~~d~G~Y~C~~~n~~g~---~~~ 289 (805)
.+.+|+.++|.|.+ .+. +.|+|++..+.. +......+. ...|.|.+++.+|+|.|+|.|.|..|. ...
T Consensus 11 ~v~~G~~v~L~C~~--~~~----v~W~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 82 (289)
T 3mjg_X 11 VLNVSSTFVLTCSG--SAP----VVWERMSQEPPQ--EMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERK 82 (289)
T ss_dssp ECCTTCCEEEEEEE--SSC----CEEEBTTBCCSE--EEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CCCE
T ss_pred EEeCCCcEEEEEec--cce----EEEECCCCCccc--ceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcEE
Confidence 48899999999988 443 999999988731 221111111 468999999999999999999998765 234
Q ss_pred EEEEEEeccCCCCCCeEEecCCC-cccccCCCeEEEEEEEeecCCCCcEEEEEECC--EEccCCCceEEEEeCcEEEEEE
Q psy2166 290 SVNLECVDKSKGQPPKFTSHIKS-LEGLKDGDSAHFECTLTPVNDPELKVEWFHNG--KPIFHKNRVKMVSDFGFVVMDI 366 (805)
Q Consensus 290 ~~~l~v~~~~~~~~p~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g--~~l~~~~~~~~~~~~~~~~l~i 366 (805)
++.+.|... ..+.+...... ...+.+|+.+.|.|.+. .|.+.++|++++ ..+. ..+ ..... +.
T Consensus 83 ~~~v~v~~p---~~~~~~~~~~~~~~~v~~G~~v~l~C~~~---~p~~~v~w~~~~~~~~~~--~~~---~~~~~--~~- 148 (289)
T 3mjg_X 83 RLYIFVPDP---TVGFLPNDAEELFIFLTEITEITIPCRVT---DPQLVVTLHEKKGDVALP--VPY---DHQRG--FS- 148 (289)
T ss_dssp EEEEECCCT---TCCBCCCCHHHHEEEESSCCCEEECCCBS---CTTSCEEEEESSCCSCCC--CCE---ETTTE--EE-
T ss_pred eEEEEEECC---CcCcccCCCCcceEEeecCCeEEEEeEcC---CCCceEEEEeCCCCCccc--eee---cCCcC--ee-
Confidence 444444321 11111111110 12378999999999984 566788888864 3332 111 11111 11
Q ss_pred cccCcCCceEEEEEEEeCceeeEEE-EEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecc
Q psy2166 367 AYVQSHDSGEYVCRAWNKYGEDFTR-ATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISD 445 (805)
Q Consensus 367 ~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (805)
...|+|.|+|.|.|..+..... ..+.|..
T Consensus 149 ---~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~----------------------------------------------- 178 (289)
T 3mjg_X 149 ---GIFEDRSYICKTTIGDREVDSDAYYVYRLQ----------------------------------------------- 178 (289)
T ss_dssp ---ECCCSSEEEEEEEETTEEEECCCEEEEECC-----------------------------------------------
T ss_pred ---eeccCcEEEEEEEeCCceeeeeeEEEEecC-----------------------------------------------
Confidence 3679999999999887665443 4444421
Q ss_pred eeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCC
Q psy2166 446 VTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTD 525 (805)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~ 525 (805)
..+|.+...+.... +.+|++++|.|.+. |.
T Consensus 179 -----------------------------------------------~~~p~i~~~~~~~~-v~~G~~v~L~C~~~--g~ 208 (289)
T 3mjg_X 179 -----------------------------------------------VSSINVSVNAVQTV-VRQGENITLMCIVI--GN 208 (289)
T ss_dssp -----------------------------------------------CCCCCCEEEESCSE-EETTSCEEEEEEEE--SC
T ss_pred -----------------------------------------------CCCCCcEEeCCcce-eEcCCCEEEEEEEC--CC
Confidence 13566666555543 89999999999999 78
Q ss_pred CCcEEEEEECCEEccCCCceEE-Ee----eCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeeeeee
Q psy2166 526 PDLVVEWFYNGKKLPHGHRYRT-FH----DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNL 594 (805)
Q Consensus 526 p~~~v~W~~~g~~l~~~~~~~~-~~----~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~ 594 (805)
|.+.|+|+++++.+........ .. ......|.|.+++.+|+|.|+|.|.|..|....++.|.|...+..
T Consensus 209 p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~ 282 (289)
T 3mjg_X 209 EVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESG 282 (289)
T ss_dssp SSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC--
T ss_pred CCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEecC
Confidence 9999999998876543222211 11 123567999999999999999999999999999999999887763
|
| >3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-27 Score=245.98 Aligned_cols=276 Identities=11% Similarity=0.073 Sum_probs=180.6
Q ss_pred CCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEE
Q psy2166 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 280 (805)
Q Consensus 201 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 280 (805)
.+|.|...+.. .+.+|+.++|.|.+ .+. .+.+.|+|+|..+..... .......|.|.+++.+|+|.|+|.|
T Consensus 23 ~~P~i~~~p~~--~v~~G~~v~L~C~~--~~~-~~~~~W~k~g~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~a 93 (316)
T 3vh8_G 23 DKPFLSAWPSA--VVPRGGHVTLRCHY--RHR-FNNFMLYKEDRIHIPIFH----GRIFQESFNMSPVTTAHAGNYTCRG 93 (316)
T ss_dssp -CCEEEEESCS--EEETTSCEEEEEEB--TTB-CCSEEEEESSCSSSCHHH----HCCBSSCEEECSCCGGGCEEEEEEE
T ss_pred CCCEeeccCCC--ccCCCCCEEEEEEc--cCC-CceEEEEeCCCccceeec----CCcceEEEEECCCCcccCeEEEEEE
Confidence 56888877763 47899999999998 454 578999999987643211 0112346999999999999999999
Q ss_pred EcCC-----eeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEE
Q psy2166 281 TNKW-----GQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKM 355 (805)
Q Consensus 281 ~n~~-----g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~ 355 (805)
.|.. +..+..+.|.|.... .+|.+...+... +.+|+.++|.|.+. .+.+.+.|+++|..+........
T Consensus 94 ~~~~~~~~~~~~s~~~~l~V~~~~--~~p~~~~~~~~~--v~~G~~v~L~C~~~---~~~~~~~w~k~g~~~~~~~~~~~ 166 (316)
T 3vh8_G 94 SHPHSPTGWSAPSNPVVIMVTGNH--RKPSLLAHPGPL--VKSGERVILQCWSD---IMFEHFFLHKEGISKDPSRLVGQ 166 (316)
T ss_dssp BCSSSSSSBCCCCCCEEEEEECSS--CCCEEEEESCSE--EETTCCEEEEEEES---SCCSEEEEEETTCCSCCEEEECE
T ss_pred EcCCCCcceecCCCcEEEEEecCC--CCCeEEecCCCc--cCCCCeEEEEEcCC---CCCcEEEEEECCCccccceeeee
Confidence 8632 223445566665422 356665544433 78999999999983 45678999999987753221111
Q ss_pred EE-eCcEEEEEEcccCcCCceEEEEEEEeCceee-----EEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccc
Q psy2166 356 VS-DFGFVVMDIAYVQSHDSGEYVCRAWNKYGED-----FTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQ 429 (805)
Q Consensus 356 ~~-~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~-----~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 429 (805)
.. ......|.|.++..+|+|.|+|.|.|..|.. .....|.|...
T Consensus 167 ~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~------------------------------ 216 (316)
T 3vh8_G 167 IHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGP------------------------------ 216 (316)
T ss_dssp EETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECS------------------------------
T ss_pred ecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCC------------------------------
Confidence 11 1233469999999999999999999987742 33345555321
Q ss_pred cCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCccccc
Q psy2166 430 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLK 509 (805)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~ 509 (805)
..+|.+...+.. .+.
T Consensus 217 ---------------------------------------------------------------~~~p~i~~~~~~--~v~ 231 (316)
T 3vh8_G 217 ---------------------------------------------------------------YEKPSLSAQPGP--KVQ 231 (316)
T ss_dssp ---------------------------------------------------------------SCCCEEEEESCS--CCC
T ss_pred ---------------------------------------------------------------CCCCeEEeCCCC--eec
Confidence 244555554433 378
Q ss_pred CCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEee-CCEEEEEEccCCCCCCEEEEEEEEcCCcc-----eEEE
Q psy2166 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD-FGIVILDILYCYEENSGVYECRATNKYGS-----DVTK 583 (805)
Q Consensus 510 ~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~-----~~~~ 583 (805)
+|++++|.|.+. .|.+.|.|+|+|..+........... .....|.|.+++ |+|.|+|.|.|..+. .+..
T Consensus 232 ~G~~v~L~C~~~---~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~ 306 (316)
T 3vh8_G 232 AGESVTLSCSSR---SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDP 306 (316)
T ss_dssp TTSCCEEEEEES---SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCC
T ss_pred CCCcEEEEEECC---CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCc
Confidence 999999999996 36689999999987753221111111 223579999998 999999999997764 3445
Q ss_pred EEEEEeeee
Q psy2166 584 ASLKCVSKT 592 (805)
Q Consensus 584 ~~l~V~~~~ 592 (805)
+.|.|..+|
T Consensus 307 ~~l~V~g~p 315 (316)
T 3vh8_G 307 LLVSVTGNP 315 (316)
T ss_dssp EEC------
T ss_pred EEEEEeCCC
Confidence 666665443
|
| >3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-26 Score=236.37 Aligned_cols=267 Identities=13% Similarity=0.128 Sum_probs=176.8
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCc-EEEEEEcccccCCCeEEEEEEEeCCeeE
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG-FVTLDLTEVYDRDQGIYTCRAWNLAGET 150 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~a~n~~g~~ 150 (805)
..+.+.|.+|+.++|.|.+. +. |+|+|++..+. .++....++. ..+|.|.+++.+|+|.|+|.|.|..|..
T Consensus 6 ~~~~~~v~~G~~v~L~C~~~--~~----v~W~~~~~~~~--~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~ 77 (289)
T 3mjg_X 6 PGPELVLNVSSTFVLTCSGS--AP----VVWERMSQEPP--QEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLE 77 (289)
T ss_dssp SCSEEECCTTCCEEEEEEES--SC----CEEEBTTBCCS--EEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC-----
T ss_pred CCCeEEEeCCCcEEEEEecc--ce----EEEECCCCCcc--cceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCC
Confidence 33467899999999999998 33 99999998874 2333333332 4689999999999999999999987662
Q ss_pred -EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccc-cccccCCCceEEEEEEEe
Q psy2166 151 -FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQ-HLSNLSEGEIAHFEASLI 228 (805)
Q Consensus 151 -~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~v~~g~~~~l~C~~~ 228 (805)
.....+.|.++.. ..|.+...+. ....+.+|+.+.|.|.+
T Consensus 78 ~~~~~~~~v~v~~p-------------------------------------~~~~~~~~~~~~~~~v~~G~~v~l~C~~- 119 (289)
T 3mjg_X 78 TDERKRLYIFVPDP-------------------------------------TVGFLPNDAEELFIFLTEITEITIPCRV- 119 (289)
T ss_dssp -CCCEEEEEECCCT-------------------------------------TCCBCCCCHHHHEEEESSCCCEEECCCB-
T ss_pred cCcEEeEEEEEECC-------------------------------------CcCcccCCCCcceEEeecCCeEEEEeEc-
Confidence 2233444433210 0011111100 01247899999999988
Q ss_pred eCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEE-EEEEEEEeccCCCCCCeEE
Q psy2166 229 PVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE-ISVNLECVDKSKGQPPKFT 307 (805)
Q Consensus 229 ~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~-~~~~l~v~~~~~~~~p~~~ 307 (805)
. .|.+.+.|++++........+ ......+ ..+|+|.|+|.|.|..+... ....+.+... .+|.+.
T Consensus 120 -~-~p~~~v~w~~~~~~~~~~~~~----~~~~~~~-----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~---~~p~i~ 185 (289)
T 3mjg_X 120 -T-DPQLVVTLHEKKGDVALPVPY----DHQRGFS-----GIFEDRSYICKTTIGDREVDSDAYYVYRLQV---SSINVS 185 (289)
T ss_dssp -S-CTTSCEEEEESSCCSCCCCCE----ETTTEEE-----ECCCSSEEEEEEEETTEEEECCCEEEEECCC---CCCCCE
T ss_pred -C-CCCceEEEEeCCCCCccceee----cCCcCee-----eeccCcEEEEEEEeCCceeeeeeEEEEecCC---CCCCcE
Confidence 3 566788888865322221111 1111111 35799999999998766543 3345555432 355565
Q ss_pred ecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEE-----eCcEEEEEEcccCcCCceEEEEEEE
Q psy2166 308 SHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVS-----DFGFVVMDIAYVQSHDSGEYVCRAW 382 (805)
Q Consensus 308 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~-----~~~~~~l~i~~v~~~d~G~Y~C~a~ 382 (805)
..+.... +.+|+.++|.|.+. +.|.+.+.|+++++............ ......|.|.++..+|+|.|+|.|.
T Consensus 186 ~~~~~~~-v~~G~~v~L~C~~~--g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 262 (289)
T 3mjg_X 186 VNAVQTV-VRQGENITLMCIVI--GNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVT 262 (289)
T ss_dssp EEESCSE-EETTSCEEEEEEEE--SCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEE
T ss_pred EeCCcce-eEcCCCEEEEEEEC--CCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEee
Confidence 5555544 88999999999998 89999999998876554322211111 1234579999999999999999999
Q ss_pred eCceeeEEEEEEEEEeccc
Q psy2166 383 NKYGEDFTRATIKCFGKGG 401 (805)
Q Consensus 383 n~~g~~~~~~~l~V~~~~~ 401 (805)
|..|....++.|.|...+.
T Consensus 263 N~~G~~~~~~~l~v~~~~~ 281 (289)
T 3mjg_X 263 ESVNDHQDEKAINITVVES 281 (289)
T ss_dssp ETTTTEEEEEEEEEEEEC-
T ss_pred cCCCCceeEEEEEEEEEec
Confidence 9999999999999987654
|
| >2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-26 Score=231.99 Aligned_cols=239 Identities=16% Similarity=0.178 Sum_probs=176.3
Q ss_pred eecCCCcEEEEEEEecCCCCCc--eEEEEECCEecCCCCceEEEecCcEEEEEEccc---ccCCCeE--EEEEEEeCCee
Q psy2166 77 KLGEAQPLHLEAQVEPKNDPNL--KIEWIFNGKPLELGSRFKTTADFGFVTLDLTEV---YDRDQGI--YTCRAWNLAGE 149 (805)
Q Consensus 77 ~v~~G~~v~L~C~~~~~~~p~~--~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~---~~~D~G~--Y~C~a~n~~g~ 149 (805)
.+.+|+.++|.|.+.+ ..|.+ .|+|+|||..+.. .+..++. .|.|..+ +.+|+|. |+|.+.|..|.
T Consensus 14 ~v~~G~~v~l~C~~~g-~~p~p~~~v~W~k~~~~l~~----~~~~~~~--~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~ 86 (265)
T 2oz4_A 14 VLEVDTQGTVVCSLDG-LFPVSEAQVHLALGDQRLNP----TVTYGND--SFSAKASVSVTAEDEGTQRLTCAVILGNQS 86 (265)
T ss_dssp EEETTEEEEEEEEEES-CSCGGGCEEEEEETTEECCC----EEEECSS--EEEEEEEEEECGGGCEEEEEEEEEEETTEE
T ss_pred eEecCCCEEEEEEccC-CCCCcceEEEEEeCCEECCc----eEeeCCC--eEEEEeecccccccCCcceEEEEEecCCCC
Confidence 7899999999999983 16665 9999999998875 2333333 3444444 7788885 99999999998
Q ss_pred EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEee
Q psy2166 150 TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIP 229 (805)
Q Consensus 150 ~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~ 229 (805)
......|.|...+ +|.+.. ... .+.+|+.++|.|.+
T Consensus 87 ~~~~~~l~V~~~p---------------------------------------~p~~~~--~~~-~v~~G~~v~l~C~~-- 122 (265)
T 2oz4_A 87 QETLQTVTIYSFP---------------------------------------APNVIL--TKP-EVSEGTEVTVKCEA-- 122 (265)
T ss_dssp EEEEEEEEEECCC---------------------------------------CCEEEE--SCS-EEETTCEEEEEEEC--
T ss_pred cEEEEEEEEeCCC---------------------------------------Cceeec--CCc-eecCCCcEEEEEEc--
Confidence 8888888886532 133332 222 36789999999987
Q ss_pred CCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCC-eeEE---EEEEEEEeccCCCCCCe
Q psy2166 230 VGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKW-GQAE---ISVNLECVDKSKGQPPK 305 (805)
Q Consensus 230 ~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~-g~~~---~~~~l~v~~~~~~~~p~ 305 (805)
. |.+.+.| +|..+.... ....|.|..+..+|+|.|+|.|.|.. |... ..+.|.|.. +|.
T Consensus 123 ~--p~~~i~W--~g~~~~~~~--------~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~-----~p~ 185 (265)
T 2oz4_A 123 H--PRAKVTL--NGVPAQPLG--------PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLY-----GPR 185 (265)
T ss_dssp C--TTSEEEE--SSCSSSCCS--------SEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEE-----EEE
T ss_pred c--CCCEEEE--CCEEccCCC--------CcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEe-----CCc
Confidence 3 7899999 888774322 23468899999999999999998543 5544 666777763 344
Q ss_pred EEecC-CCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCcEEEEEEcccCcCCceEEEEEEEeC
Q psy2166 306 FTSHI-KSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNK 384 (805)
Q Consensus 306 ~~~~~-~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~ 384 (805)
+.... .....+.+|+.++|.|.+. |.|.+.+.|+|+|..+.... . + ..+..+|+|.|+|.|.|.
T Consensus 186 ~~~~~~p~~~~v~~g~~~~l~C~~~--g~P~p~i~W~~~~~~~~~~g--------~---~--~~v~~~d~G~Y~C~a~N~ 250 (265)
T 2oz4_A 186 LDERDCPGNWTWPENSQQTPMCQAW--GNPLPELKCLKDGTFPLPIG--------E---S--VTVTRDLEGTYLCRARST 250 (265)
T ss_dssp CCGGGSCSEEEEETTCEECCCCCCE--EESCCEEEEEETTTEECCTT--------S---C--EECCGGGCEEEEEEEEET
T ss_pred cccccCCCccEEcCCCeEEEEeECc--cCCCCeEEEEECCcccCCCC--------c---E--EEeehhhCeEEEEEEECC
Confidence 43322 1222478899999999997 88999999999987332221 1 1 237789999999999999
Q ss_pred ceeeEEEEEEEEEe
Q psy2166 385 YGEDFTRATIKCFG 398 (805)
Q Consensus 385 ~g~~~~~~~l~V~~ 398 (805)
.|.....+.|.|..
T Consensus 251 ~G~~~~~~~l~V~~ 264 (265)
T 2oz4_A 251 QGEVTREVTVNVLS 264 (265)
T ss_dssp TEEEEEEEEEEEEC
T ss_pred CCcEEEEEEEEEec
Confidence 99999999998863
|
| >2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=233.64 Aligned_cols=194 Identities=22% Similarity=0.305 Sum_probs=156.5
Q ss_pred CCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCC-CcEEEEE-EcCeEEEEEcCCCCcccEEEEE
Q psy2166 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTVH-AFGMVVLEILGTKIEDTGVYTC 278 (805)
Q Consensus 201 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~-~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C 278 (805)
.||.|...+.+. .+.+|+.++|.|.+ .+.|.+.+.|+|+|..+... .++.... .++...|.|.+++.+|+|.|+|
T Consensus 3 ~~P~~~~~p~~~-~v~~G~~v~l~C~~--~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 79 (305)
T 2nzi_A 3 MAPHFKEELRNL-NVRYQSNATLVCKV--TGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQV 79 (305)
T ss_dssp CCCEEEECCCCE-EECTTCCEEEEEEE--ECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEE
T ss_pred CCCeeeecccce-EEeCCCcEEEEEEE--eCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEE
Confidence 578888888765 58999999999998 68888999999999998754 3454433 3456799999999999999999
Q ss_pred EEEcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEe
Q psy2166 279 RATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD 358 (805)
Q Consensus 279 ~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~ 358 (805)
.|.|..|.....+.|.|...+....|.....+... .+.+|+.+.|.|.+. +.|.+.+.|++++..+....++.+...
T Consensus 80 ~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~-~~~~g~~~~l~C~~~--g~p~p~i~W~~~~~~~~~~~~~~~~~~ 156 (305)
T 2nzi_A 80 RATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAV-HALRGEVVSIKIPFS--GKPDPVITWQKGQDLIDNNGHYQVIVT 156 (305)
T ss_dssp EEEETTEEEEEEEEEEECEEEEECCCHHHHSSCCE-EEETTCCEEEEEEEE--EESCCEEEEEESSSBCCSSSSCEEEEC
T ss_pred EEEcCCCCccceEEEEEecCCccCCCccccccccE-EecCCCEEEEEEEEC--CCCCCEEEEEECCEECCCCCcEEEEEc
Confidence 99999998888888888643211112111111222 377899999999998 788899999999999988778877776
Q ss_pred CcEEEEEEcc-cCcCCceEEEEEEEeCceeeEEEEEEEEEecc
Q psy2166 359 FGFVVMDIAY-VQSHDSGEYVCRAWNKYGEDFTRATIKCFGKG 400 (805)
Q Consensus 359 ~~~~~l~i~~-v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 400 (805)
.....|.|.+ +..+|.|.|+|.|.|..|.....+.|.|...|
T Consensus 157 ~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P 199 (305)
T 2nzi_A 157 RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVP 199 (305)
T ss_dssp SSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCC
T ss_pred CCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCC
Confidence 6777899999 99999999999999999999998888886543
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=215.49 Aligned_cols=190 Identities=28% Similarity=0.415 Sum_probs=149.3
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCC--ceEEEeeCCEEEEEEccCCCCCCEEEE
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGH--RYRTFHDFGIVILDILYCYEENSGVYE 570 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 570 (805)
..+|.|...+.... +.+|++++|.|.+. +.|.+.++|+|+|..+.... ++.+...++...|.|.+++.+|+|.|+
T Consensus 3 ~~~P~~~~~~~~~~-v~~G~~v~l~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 79 (194)
T 2a38_A 3 TQAPTFTQPLQSVV-VLEGSTATFEAHIS--GFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYS 79 (194)
T ss_dssp CEEEEEEECCCCEE-EETTSCEEEEEEEE--EESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred CCCCeEEccCCceE-EECCCEEEEEEEEE--ecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEE
Confidence 35678887766654 89999999999998 66888999999999886553 455555555566777777777777777
Q ss_pred EEEEcCCcceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCC
Q psy2166 571 CRATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKY 650 (805)
Q Consensus 571 C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 650 (805)
|.|.|..|.....+.|.|...
T Consensus 80 C~~~n~~~~~~~~~~l~v~~~----------------------------------------------------------- 100 (194)
T 2a38_A 80 LKATNGSGQATSTAELLVKAE----------------------------------------------------------- 100 (194)
T ss_dssp EEEEETTEEEEEEEEEEEECC-----------------------------------------------------------
T ss_pred EEEEcCCceEeEEEEEEEccC-----------------------------------------------------------
Confidence 777666665554444444321
Q ss_pred cceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEE
Q psy2166 651 GSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY 730 (805)
Q Consensus 651 g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~ 730 (805)
+ .+|.+...+... .+.+|+.+.|.|.+. |.|.|.++|+|
T Consensus 101 --------------~------------------------~~p~~~~~~~~~-~~~~g~~~~l~C~~~--g~p~~~v~W~~ 139 (194)
T 2a38_A 101 --------------T------------------------APPNFVQRLQSM-TVRQGSQVRLQVRVT--GIPTPVVKFYR 139 (194)
T ss_dssp --------------C------------------------EEEEEEECCCCE-EECTTEEEEEEEEEE--EESCCEEEEEE
T ss_pred --------------C------------------------CCCEEEeCCccE-EEcCCCEEEEEEEEE--EecCCeEEEEE
Confidence 0 234444445555 789999999999998 89999999999
Q ss_pred CCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 731 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 731 ~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
+|..+..+.++.+..++....|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 194 (194)
T 2a38_A 140 DGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194 (194)
T ss_dssp TTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence 9999999989988888888899999999999999999999999999999999884
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-25 Score=234.13 Aligned_cols=282 Identities=15% Similarity=0.123 Sum_probs=178.9
Q ss_pred CCCceecccccccccCC-CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcE-EEEEEcC----eEEEEEcCCCCcccE
Q psy2166 201 RPPQFTSEFQHLSNLSE-GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI-RTVHAFG----MVVLEILGTKIEDTG 274 (805)
Q Consensus 201 ~~p~~~~~~~~~~~v~~-g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~-~~~~~~~----~~~L~i~~~~~~d~G 274 (805)
.+|.+...++....+.. |+.+.|.|.+.....+.+.|.|+|+|..+...... .....++ .+.|.|.+...+|+|
T Consensus 6 ~~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g 85 (323)
T 2wqr_A 6 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDR 85 (323)
T ss_dssp CCCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTC
T ss_pred CCCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCC
Confidence 45666655444332333 26999999985322235899999999998754322 1122233 246888888888999
Q ss_pred EEEEEEEcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCc---EEEEEECC-EEccCC
Q psy2166 275 VYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPEL---KVEWFHNG-KPIFHK 350 (805)
Q Consensus 275 ~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~---~v~W~~~g-~~l~~~ 350 (805)
.|+|.|.|..+.....+.+.+.. ....|.+...+.....+.+|+.++|.|.+.+ ..|.+ .|.|++++ ..+...
T Consensus 86 ~Y~C~a~n~~~~~~~~~~~~~~~--~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g-~~P~p~~~~i~W~k~~g~~~~~~ 162 (323)
T 2wqr_A 86 TYTCQVTYQGHTFEDSTKKCADS--NPRGVSAYLSRPSPFDLFIRKSPTITCLVVD-LAPSKGTVQLTWSRASGKPVNHS 162 (323)
T ss_dssp CEEEEEEETTEEEEEEECCCCCS--SGGGCEEEECCCCHHHHHTSSCCEEEEEEEE-ECCCSSCCEEEEEETTCCCCCCC
T ss_pred cEEEEEEeCCCCcceeeecCCCC--CCCCCEEEEcCCCHHHhccCCeEEEEEEEec-cCCCCCceEEEEEECCCcccccc
Confidence 99999999887655443321110 1123334333333333788999999999984 34555 99999964 554332
Q ss_pred CceEEEEeC----cEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCC
Q psy2166 351 NRVKMVSDF----GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQP 426 (805)
Q Consensus 351 ~~~~~~~~~----~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 426 (805)
......... ....|.|.++..+|+|.|+|.|.|..+... ..+.|...
T Consensus 163 ~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~--~~~~v~~~--------------------------- 213 (323)
T 2wqr_A 163 TRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRA--LMRSTTKT--------------------------- 213 (323)
T ss_dssp CCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC--EEEEECCC---------------------------
T ss_pred cCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCC--eeeEEEcc---------------------------
Confidence 221111111 233699999999999999999999864322 22333100
Q ss_pred ccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcc
Q psy2166 427 VAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVT 506 (805)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~ 506 (805)
.....+|.+........
T Consensus 214 ---------------------------------------------------------------~~~~~~P~v~~~~~~~~ 230 (323)
T 2wqr_A 214 ---------------------------------------------------------------SGPRAAPEVYAFATPEW 230 (323)
T ss_dssp ---------------------------------------------------------------CSCCBCCEEEEEECCCC
T ss_pred ---------------------------------------------------------------CCCCCCCEEEEeCCChH
Confidence 00135676665443322
Q ss_pred cccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEE----EeeCC----EEEEEEccCCCCCCEEEEEEEEcCCc
Q psy2166 507 QLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT----FHDFG----IVILDILYCYEENSGVYECRATNKYG 578 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~----~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g 578 (805)
...|+.++|.|.+.+...+.+.|+|+|||+.|..+. +.. ...++ .+.|.|..+..+|+|.|+|.|.|..+
T Consensus 231 -~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~-~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~ 308 (323)
T 2wqr_A 231 -PGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDAR-HSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAA 308 (323)
T ss_dssp -TTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGG-EEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTS
T ss_pred -HhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCc-eeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCC
Confidence 234999999999995323345999999999986542 211 11121 34699999999999999999999887
Q ss_pred c
Q psy2166 579 S 579 (805)
Q Consensus 579 ~ 579 (805)
.
T Consensus 309 ~ 309 (323)
T 2wqr_A 309 S 309 (323)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=236.58 Aligned_cols=274 Identities=13% Similarity=0.174 Sum_probs=177.2
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec-----------------CCCCceEEEec--CcEEEEEEccc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL-----------------ELGSRFKTTAD--FGFVTLDLTEV 131 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i-----------------~~~~~~~~~~~--~~~~~L~I~~~ 131 (805)
++.+.+.+|+.++|.|.+.+...+.+.|.|+|+ |..+ ....|+.+..+ ++..+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (344)
T 1za6_B 7 SGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSL 86 (344)
T ss_dssp CCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCC
Confidence 346789999999999999843224678999996 4322 12457777654 45679999999
Q ss_pred ccCCCeEEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccccc
Q psy2166 132 YDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQH 211 (805)
Q Consensus 132 ~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 211 (805)
+.+|+|.|+|.|.|..+.......|.|...+ ..+|.+....+.
T Consensus 87 ~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~-------------------------------------~~~P~i~~~~~~ 129 (344)
T 1za6_B 87 RSEDTAVYFCTRSLNMAYWGQGTLVTVSSAS-------------------------------------TKGPSVFPLAPS 129 (344)
T ss_dssp CGGGCEEEEEEETTTTCEECCCEEEEECSSC-------------------------------------CBCCEEEEECCS
T ss_pred CcccCEEEEEEEecCcceecCcEEEEEecCC-------------------------------------CCCCeEEEcccc
Confidence 9999999999999865444445667775311 023444433222
Q ss_pred ccccCCCceEEEEEEEeeCCCCC-eEEEEEECCEEccCCCcEEEEEEcC----eEEEEEcCCCCcccEEEEEEEEcCCee
Q psy2166 212 LSNLSEGEIAHFEASLIPVGDQT-MTVEFLYNGKPIEASHRIRTVHAFG----MVVLEILGTKIEDTGVYTCRATNKWGQ 286 (805)
Q Consensus 212 ~~~v~~g~~~~l~C~~~~~~~p~-~~i~W~k~g~~l~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~n~~g~ 286 (805)
. .+.+|+.++|.|.+.. ..|. +.|.|+|+|..+...........++ ...|.|.+++.+| |.|+|.|.|..+.
T Consensus 130 ~-~~~~g~~v~L~C~~~g-~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~ 206 (344)
T 1za6_B 130 S-KSTSGGTAALGCLVKD-YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN 206 (344)
T ss_dssp C-TTTSSSEEEEEEEEEE-EBSSCCCEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGT
T ss_pred c-cccCCCcEEEEEEEee-EECCCeEEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCC
Confidence 2 3679999999999852 2354 7999999997642110000001111 2479999998888 9999999998876
Q ss_pred EEEEEEEEEec-------------------cCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEc
Q psy2166 287 AEISVNLECVD-------------------KSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI 347 (805)
Q Consensus 287 ~~~~~~l~v~~-------------------~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l 347 (805)
......+.+.. .....+|.+........ ...|..++|.|.+.|...+.+.|+|+|||..+
T Consensus 207 ~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v~~~~~~~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~ 285 (344)
T 1za6_B 207 TKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTLPPSRD-ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPE 285 (344)
T ss_dssp EEEEEEECCCCC--------------------CCBCCEEEEECCCGG-GGGSSSEEEEEEEEEEBSSCCEEEEESSSSCC
T ss_pred ccceEeecccccccccccCCCCCCccccccCCCCcCCEEEEeCCChH-hccCCcEEEEEEEeeEECCCeEEEEEECCeEC
Confidence 54333332110 01124566655444333 23466699999998422235799999999887
Q ss_pred cCCCceEE--EEeCc---EEEEEEcccCcCCceEEEEEEEeCcee
Q psy2166 348 FHKNRVKM--VSDFG---FVVMDIAYVQSHDSGEYVCRAWNKYGE 387 (805)
Q Consensus 348 ~~~~~~~~--~~~~~---~~~l~i~~v~~~d~G~Y~C~a~n~~g~ 387 (805)
........ ..++. ...|.|.....+|.|.|+|.|.|....
T Consensus 286 ~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l~ 330 (344)
T 1za6_B 286 NNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 330 (344)
T ss_dssp CSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEEEEECTTST
T ss_pred CCcEecceEECCCCcEEEEEEEEEChHHccCCCeEEEEEEcCCCC
Confidence 64322111 11111 134677777777899999999997643
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=209.65 Aligned_cols=191 Identities=21% Similarity=0.356 Sum_probs=155.0
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCC-CceEEEe-eCCEEEEEEccCCCCCCEEEEE
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG-HRYRTFH-DFGIVILDILYCYEENSGVYEC 571 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C 571 (805)
.+|.|...+.... +.+|+.++|.|.+. +.|.+.++|+|+|..+... .++.+.. .++...|.|.+++.+|+|.|+|
T Consensus 3 ~~P~~~~~~~~~~-v~~G~~v~l~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 79 (197)
T 2j8h_A 3 MAPHFKEELRNLN-VRYQSNATLVCKVT--GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQV 79 (197)
T ss_dssp CCCEEEECCCCEE-EETTSCEEEEEEEE--CSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEE
T ss_pred CCCEEEEcCCccE-EcCCCEEEEEEEEe--ecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEE
Confidence 6788888776654 89999999999999 7788999999999998754 4555543 4556679999999999999999
Q ss_pred EEEcCCcceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCc
Q psy2166 572 RATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG 651 (805)
Q Consensus 572 ~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 651 (805)
.|.|..|.....+.|.|..++.+.
T Consensus 80 ~~~n~~g~~~~~~~l~V~~~p~~~-------------------------------------------------------- 103 (197)
T 2j8h_A 80 RATNQGGSVSGTASLEVEVPAKIH-------------------------------------------------------- 103 (197)
T ss_dssp EEEETTEEEEEEEEEEEEEEEEEC--------------------------------------------------------
T ss_pred EEEECCCceeEEEEEEEcCCCcCC--------------------------------------------------------
Confidence 999888887777777776544321
Q ss_pred ceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEEC
Q psy2166 652 SDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 731 (805)
Q Consensus 652 ~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~ 731 (805)
.|.+...+... .+.+|+.+.|.|.+. |.|.|.|.|+|+
T Consensus 104 ---------------------------------------~~~~~~~~~~~-~~~~g~~~~l~C~~~--g~p~p~i~W~~~ 141 (197)
T 2j8h_A 104 ---------------------------------------LPKTLEGMGAV-HALRGEVVSIKIPFS--GKPDPVITWQKG 141 (197)
T ss_dssp ---------------------------------------CSSCBTTBEEE-EEETTCCCEEEEEEE--EESCCEEEEEES
T ss_pred ---------------------------------------CCccccccCeE-EEeCCCEEEEEEEEE--ecCCCcEEEEEC
Confidence 01111111222 678899999999999 999999999999
Q ss_pred CEEccCCCCeEEEeeCcEEEEEEcC-CCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 732 GKPIEASHRIRTVHAFGMVVLEILG-TKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 732 g~~l~~~~~~~~~~~~~~~~L~i~~-v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
|..+..+.++.+........|.|.+ +..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 196 (197)
T 2j8h_A 142 QDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196 (197)
T ss_dssp SCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence 9999988888887777778999999 99999999999999999999999999986
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-25 Score=213.94 Aligned_cols=201 Identities=14% Similarity=0.215 Sum_probs=145.3
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeC--CEEEEEEccCCCCCCEEEEEE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF--GIVILDILYCYEENSGVYECR 572 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~ 572 (805)
.|.|...+. ..+.+|+.+.|.|.+.+ +.|.|.|+|+|||++|..+.++.+..+. +...|.|.+++.+|+|.|+|.
T Consensus 3 ~p~~~~~~~--~~v~eg~~v~l~c~~~~-~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~ 79 (207)
T 3rbs_A 3 DPFTKSELA--VEILEKGQVRFWMQAEK-LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQ 79 (207)
T ss_dssp ---CCEEEE--EEECGGGCEEEEEECSC-CCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEE
T ss_pred CCeeecCCc--eEEEeCCeEEEEEEEec-CCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEE
Confidence 456655543 34899999999999974 5799999999999999888888776554 667899999999999999999
Q ss_pred EEcCCcceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcc
Q psy2166 573 ATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652 (805)
Q Consensus 573 a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 652 (805)
|.| |.....+.+.+....... + +....+
T Consensus 80 a~N--g~a~~~~~~~~~~~~~~~----------------~----------------~~~~~~------------------ 107 (207)
T 3rbs_A 80 LQD--GKATNHSTVVLVGDVFKK----------------L----------------QKEAEF------------------ 107 (207)
T ss_dssp EEE--TTEEEEEEEEECTHHHHH----------------H----------------HHHHHH------------------
T ss_pred EEC--CCeEEEEEEEEEccchhh----------------h----------------cccccc------------------
Confidence 998 555444433221110000 0 000000
Q ss_pred eEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCC-CCeEEEEEEC
Q psy2166 653 DVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGD-QTMTVEFLYN 731 (805)
Q Consensus 653 ~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~-p~~~v~W~~~ 731 (805)
.+.. ... ..+|.|...+ +. .+.+|+.+.|.|.+. |. |.|.|+|+||
T Consensus 108 -------~~~~--------~~~--------------~~~P~~~~~~-~~-~v~~g~~v~l~C~v~--g~~P~p~i~W~k~ 154 (207)
T 3rbs_A 108 -------QRQE--------WIR--------------KQGPHFVEYL-SW-EVTGECNVLLKCKVA--NIKKETHIVWYKD 154 (207)
T ss_dssp -------HHHH--------HHH--------------HTSSEEEEEE-EE-EEETTTEEEEEEEEE--SCCTTCEEEEEET
T ss_pred -------cccc--------ccc--------------CCCCceEecC-Cc-EEcCCCcEEEEEEEe--CCCCCCEEEEEEC
Confidence 0000 000 0356666655 34 788999999999999 98 9999999999
Q ss_pred CEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 732 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 732 g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
|+++..+.++. ...+..+|.|.++..+|+|.|+|.|.|.+|.++.++.|+++
T Consensus 155 g~~l~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~~ 206 (207)
T 3rbs_A 155 EREISVDEKHD--FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206 (207)
T ss_dssp TEEECCCCCCC--CSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred CEECCCCCceE--cCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEecC
Confidence 99998876653 33455689999999999999999999999999999999763
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-24 Score=206.19 Aligned_cols=192 Identities=21% Similarity=0.302 Sum_probs=161.3
Q ss_pred CCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEE
Q psy2166 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYEC 571 (805)
Q Consensus 492 ~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 571 (805)
+..+|.|...+.... +.+|+.++|.|.+. +.|.+.+.|+|+|..+..+.++.+..++....|.|.+++.+|+|.|+|
T Consensus 4 ~~~~P~~~~~~~~~~-v~~G~~v~l~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 80 (197)
T 3lcy_A 4 SGEAPGIRKEMKDVT-TKLGEAAQLSCQIV--GRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTC 80 (197)
T ss_dssp CCEEEEEEECCCCEE-EETTSEEEEEEEEE--EESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEE
T ss_pred cCCCCcccccCCceE-EeCCCcEEEEEEEe--cCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEE
Confidence 356788888777664 89999999999998 568889999999999998888888888888899999999999999999
Q ss_pred EEEcCCcceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCc
Q psy2166 572 RATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG 651 (805)
Q Consensus 572 ~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 651 (805)
.|.|..|.....+.|.|...+.+....+
T Consensus 81 ~~~n~~~~~~~~~~l~v~~~p~~~~~~~---------------------------------------------------- 108 (197)
T 3lcy_A 81 IATNEVGEVETSSKLLLQATPQFHPGYP---------------------------------------------------- 108 (197)
T ss_dssp EEECSSCEEEEEEEEEEEEEEEECTTSC----------------------------------------------------
T ss_pred EEECCCCceeEEEEEEEEcCCCCCCCcc----------------------------------------------------
Confidence 9999998888777777765443110000
Q ss_pred ceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEEC
Q psy2166 652 SDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 731 (805)
Q Consensus 652 ~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~ 731 (805)
.+... .+.+|+.+.|.|.+. |.|.|.+.|+++
T Consensus 109 ---------------------------------------------~~~~~-~~~~g~~~~l~C~~~--~~p~p~v~W~~~ 140 (197)
T 3lcy_A 109 ---------------------------------------------LKEKY-YGAVGSTLRLHVMYI--GRPVPAMTWFHG 140 (197)
T ss_dssp ---------------------------------------------CCSEE-EEETTSCEEEEEEEE--EESCCEEEEEET
T ss_pred ---------------------------------------------CCcce-eecCCCeEEEEEEEe--eeeCCeeEEeEC
Confidence 00111 566799999999999 899999999999
Q ss_pred CEEccCCCCeEEEeeCcEEEEEEcCCCC-CCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 732 GKPIEASHRIRTVHAFGMVVLEILGTKI-EDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 732 g~~l~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
|..+..+.++.+...+....|.|.++.. +|+|.|+|.|.|.+|..+.++.|.|..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 196 (197)
T 3lcy_A 141 QKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196 (197)
T ss_dssp TEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred CEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence 9999999898888777778999999995 899999999999999999999999864
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-24 Score=208.90 Aligned_cols=196 Identities=23% Similarity=0.283 Sum_probs=148.3
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEE-eeCCEEEEEEccC-CCCCCEEEE
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTF-HDFGIVILDILYC-YEENSGVYE 570 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~-~~~~~~~L~i~~v-~~~d~G~Y~ 570 (805)
..+|.|...+.+.. +.+|+.+.|.|.+. |.|.+.++|+|+|..+..+...... .++....|.|.++ +.+|+|.|+
T Consensus 4 ~~~P~~~~~p~~~~-v~~G~~v~L~C~~~--g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~ 80 (212)
T 2yd6_A 4 ETPPRFTRTPVDQT-GVSGGVASFICQAT--GDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYE 80 (212)
T ss_dssp CEEEEEEECCCCEE-EETTSCEEEEEEEE--EESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEE
T ss_pred CCCCeEEeCcceeE-EecCCeEEEEEEEe--eCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEE
Confidence 56788888877765 89999999999999 6688899999999999765433322 2334566888888 478888888
Q ss_pred EEEEcCCcceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCC
Q psy2166 571 CRATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKY 650 (805)
Q Consensus 571 C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 650 (805)
|.|.|..|.....+.|.|...+.+
T Consensus 81 C~a~n~~g~~~~~~~l~V~~~~~~-------------------------------------------------------- 104 (212)
T 2yd6_A 81 CVASNNVGEISVSTRLTVLREDQI-------------------------------------------------------- 104 (212)
T ss_dssp EEEEETTEEEEEEEEEEEECGGGC--------------------------------------------------------
T ss_pred EEEEcCCCcEEEEEEEEEeccCcc--------------------------------------------------------
Confidence 888887777666666666543220
Q ss_pred cceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEE
Q psy2166 651 GSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY 730 (805)
Q Consensus 651 g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~ 730 (805)
| ...|.|...+... .+.+|+.+.|.|.+. |.|.|.|+|+|
T Consensus 105 -----------------------~--------------~~~p~~~~~~~~~-~~~~g~~v~l~C~~~--g~p~p~v~W~~ 144 (212)
T 2yd6_A 105 -----------------------P--------------RGFPTIDMGPQLK-VVERTRTATMLCAAS--GNPDPEITWFK 144 (212)
T ss_dssp -----------------------C--------------TTCCEEEECCCCE-EEETTSCEEEEEEEE--CSSCCEEEEEE
T ss_pred -----------------------C--------------CCcceeecCCcce-eEecCCCEEEEEEec--CCCCCeEEEEE
Confidence 0 0235555555555 788999999999998 99999999999
Q ss_pred CCEEccCC---CCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEE-EEEEEEEEEe
Q psy2166 731 NGKPIEAS---HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE-ISVNLECVVW 787 (805)
Q Consensus 731 ~g~~l~~~---~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~-~~~~l~V~~~ 787 (805)
+|..+... .++..........|.|.++..+|+|.|+|.|.|.+|... ..+.|.|++.
T Consensus 145 ~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~ 205 (212)
T 2yd6_A 145 DFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGT 205 (212)
T ss_dssp TTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred CCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEec
Confidence 99998865 566666666778999999999999999999999999764 5567777653
|
| >2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-24 Score=204.89 Aligned_cols=188 Identities=22% Similarity=0.384 Sum_probs=157.8
Q ss_pred CCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCC--ceEEEecCcEEEEEEcccccCCCeEEEE
Q psy2166 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS--RFKTTADFGFVTLDLTEVYDRDQGIYTC 141 (805)
Q Consensus 64 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~--~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 141 (805)
.+|.|...+. .+.+.+|+.++|.|.+. +.|.+.|.|+|+|..+.... ++.+...++..+|.|.+++.+|+|.|+|
T Consensus 4 ~~P~~~~~~~-~~~v~~G~~v~l~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 80 (194)
T 2a38_A 4 QAPTFTQPLQ-SVVVLEGSTATFEAHIS--GFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSL 80 (194)
T ss_dssp EEEEEEECCC-CEEEETTSCEEEEEEEE--EESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred CCCeEEccCC-ceEEECCCEEEEEEEEE--ecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEE
Confidence 3567766554 68999999999999998 57888999999999887664 6777777778899999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceE
Q psy2166 142 RAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIA 221 (805)
Q Consensus 142 ~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~ 221 (805)
.+.|..|.......|.|.... .+|.+...+... .+.+|+.+
T Consensus 81 ~~~n~~~~~~~~~~l~v~~~~--------------------------------------~~p~~~~~~~~~-~~~~g~~~ 121 (194)
T 2a38_A 81 KATNGSGQATSTAELLVKAET--------------------------------------APPNFVQRLQSM-TVRQGSQV 121 (194)
T ss_dssp EEEETTEEEEEEEEEEEECCC--------------------------------------EEEEEEECCCCE-EECTTEEE
T ss_pred EEEcCCceEeEEEEEEEccCC--------------------------------------CCCEEEeCCccE-EEcCCCEE
Confidence 999999988888888886421 234455444433 47899999
Q ss_pred EEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEE
Q psy2166 222 HFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 295 (805)
Q Consensus 222 ~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v 295 (805)
.|.|.+ .+.|.+.+.|+++|..+....++.....+....|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 122 ~l~C~~--~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 193 (194)
T 2a38_A 122 RLQVRV--TGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193 (194)
T ss_dssp EEEEEE--EEESCCEEEEEETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEE--EEecCCeEEEEECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence 999998 577888999999999999888888777777789999999999999999999999999888888776
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A | Back alignment and structure |
|---|
Probab=99.92 E-value=9.3e-24 Score=205.81 Aligned_cols=193 Identities=27% Similarity=0.378 Sum_probs=151.6
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEcc-CCCceEEEe-eCCEEEEEEccCCC-CCCEEE
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLP-HGHRYRTFH-DFGIVILDILYCYE-ENSGVY 569 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~-~~~~~~~~~-~~~~~~L~i~~v~~-~d~G~Y 569 (805)
..+|.|...+.+.. +.+|+.++|.|.+. |.|.+.++|+++|..+. ...++.+.. .++...|.|.+++. +|+|.|
T Consensus 4 ~~pP~~~~~p~~~~-v~~G~~v~l~C~~~--g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y 80 (212)
T 2yd1_A 4 AHPPEIIRKPQNQG-VRVGGVASFYCAAR--GDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPY 80 (212)
T ss_dssp -CCCEEEECCCCEE-EETTSCEEEEEEEE--CSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEE
T ss_pred CCCCEEEcCCCceE-EecCCEEEEEEEEc--cCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceE
Confidence 47899988877765 89999999999999 77888999999999997 556666544 35557899999998 899999
Q ss_pred EEEEEcCCcc-eEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEe
Q psy2166 570 ECRATNKYGS-DVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATN 648 (805)
Q Consensus 570 ~C~a~n~~g~-~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 648 (805)
+|.|.|..|. ....+.|.|...+.. +
T Consensus 81 ~C~~~n~~g~~~~~~~~l~V~~~~~~------~----------------------------------------------- 107 (212)
T 2yd1_A 81 ECVAENGVGDAVSADATLTIYEGDKT------P----------------------------------------------- 107 (212)
T ss_dssp EEEEECSSSCEEEEEEEEEEECTTCS------C-----------------------------------------------
T ss_pred EEEEEeCCCCeEEeeEEEEEecccCC------C-----------------------------------------------
Confidence 9999888877 556666666543220 0
Q ss_pred CCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEE
Q psy2166 649 KYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEF 728 (805)
Q Consensus 649 ~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W 728 (805)
..+|.|...+... .+.+|+.+.|.|.+. |.|.|.|+|
T Consensus 108 ----------------------------------------~~~p~~~~~~~~~-~~~~g~~v~l~C~~~--g~p~p~i~W 144 (212)
T 2yd1_A 108 ----------------------------------------AGFPVITQGPGTR-VIEVGHTVLMTCKAI--GNPTPNIYW 144 (212)
T ss_dssp ----------------------------------------TTCCEEEECCCCE-EEETTCCEEECCEEE--CSSCCEEEE
T ss_pred ----------------------------------------CCCCeeEeCCCce-EeecCCeEEEEEEec--cCCCCeEEE
Confidence 0235566556566 788999999999998 999999999
Q ss_pred EECCEEccCC-CCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEE-EEEEEEEeC
Q psy2166 729 LYNGKPIEAS-HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS-VNLECVVWS 788 (805)
Q Consensus 729 ~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~-~~l~V~~~~ 788 (805)
+++|..+... .++. . ..+ .|.|.++..+|+|.|+|.|.|.+|..... +.|.|....
T Consensus 145 ~~~~~~~~~~~~~~~-~-~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~ 202 (212)
T 2yd1_A 145 IKNQTKVDMSNPRYS-L-KDG--FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRR 202 (212)
T ss_dssp EETTEECCTTSTTEE-E-ETT--EEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred EECCeEcccCCCeEE-c-cCC--eEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEecc
Confidence 9999998864 3443 2 234 79999999999999999999999998765 889987653
|
| >2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.5e-25 Score=228.76 Aligned_cols=263 Identities=15% Similarity=0.180 Sum_probs=166.2
Q ss_pred CcEEEEEEEecCCCC-CceEEEEECCEecCCCCce--EEEecCc---EEEEEEcccccCCCeEEEEEEEeCCeeEEEEEE
Q psy2166 82 QPLHLEAQVEPKNDP-NLKIEWIFNGKPLELGSRF--KTTADFG---FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTT 155 (805)
Q Consensus 82 ~~v~L~C~~~~~~~p-~~~v~W~k~g~~i~~~~~~--~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 155 (805)
+.++|.|.+.+. .| .+.|+|+|||..+..+... ....++. .+.|.|.+++.+|+|.|+|.|.|..+.......
T Consensus 25 ~~v~L~C~~~g~-~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~ 103 (323)
T 2wqr_A 25 PTIQLLCLVSGY-TPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTK 103 (323)
T ss_dssp SEEEEEEEEEEE-CCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEEC
T ss_pred CcEEEEEEEeCe-ECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeee
Confidence 699999999852 33 5799999999998755322 1112221 236889999889999999999998765443322
Q ss_pred EEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCCCe
Q psy2166 156 IYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM 235 (805)
Q Consensus 156 l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~ 235 (805)
+.+... ..+|.+...++....+.+|+.++|.|.+.. ..|.+
T Consensus 104 ~~~~~~--------------------------------------~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g-~~P~p 144 (323)
T 2wqr_A 104 KCADSN--------------------------------------PRGVSAYLSRPSPFDLFIRKSPTITCLVVD-LAPSK 144 (323)
T ss_dssp CCCCSS--------------------------------------GGGCEEEECCCCHHHHHTSSCCEEEEEEEE-ECCCS
T ss_pred cCCCCC--------------------------------------CCCCEEEEcCCCHHHhccCCeEEEEEEEec-cCCCC
Confidence 100000 012222222222224778999999999842 24444
Q ss_pred ---EEEEEECC-EEccCCCcEEEEEEc----CeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEeccCCCCCCeEE
Q psy2166 236 ---TVEFLYNG-KPIEASHRIRTVHAF----GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFT 307 (805)
Q Consensus 236 ---~i~W~k~g-~~l~~~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~ 307 (805)
.|.|||++ ..+...........+ ....|.|.+++.+|+|.|+|.|.|..+.......+.+. .....+|.+.
T Consensus 145 ~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~-~~~~~~P~v~ 223 (323)
T 2wqr_A 145 GTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKT-SGPRAAPEVY 223 (323)
T ss_dssp SCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCC-CSCCBCCEEE
T ss_pred CceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEcc-CCCCCCCEEE
Confidence 99999964 554332222111111 23579999999999999999999986433222222211 0111456655
Q ss_pred ecCCCcccccCCCeEEEEEEEeecCCCC-cEEEEEECCEEccCCCceE---EEE-eC---cEEEEEEcccCcCCceEEEE
Q psy2166 308 SHIKSLEGLKDGDSAHFECTLTPVNDPE-LKVEWFHNGKPIFHKNRVK---MVS-DF---GFVVMDIAYVQSHDSGEYVC 379 (805)
Q Consensus 308 ~~~~~~~~~~~g~~~~l~C~~~~~~~p~-~~v~W~~~g~~l~~~~~~~---~~~-~~---~~~~l~i~~v~~~d~G~Y~C 379 (805)
..+.... ...|+.++|.|.+.+ ..|. ..|.|+|||..+....... ... ++ ....|.|..+..+|+|.|+|
T Consensus 224 ~~~~~~~-~~~g~~~~l~C~~~g-~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C 301 (323)
T 2wqr_A 224 AFATPEW-PGSRDKRTLACLIQN-FMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFIC 301 (323)
T ss_dssp EEECCCC-TTCTTEEEEEEEEEE-EBSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEE
T ss_pred EeCCChH-HhcCCcEEEEEEeee-eeCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEE
Confidence 4443332 234999999999984 2443 4899999999986532110 001 11 12368999999999999999
Q ss_pred EEEeCcee
Q psy2166 380 RAWNKYGE 387 (805)
Q Consensus 380 ~a~n~~g~ 387 (805)
.|.|..+.
T Consensus 302 ~a~n~~~~ 309 (323)
T 2wqr_A 302 RAVHEAAS 309 (323)
T ss_dssp EEECTTST
T ss_pred EEEeCCCC
Confidence 99998875
|
| >1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=227.64 Aligned_cols=289 Identities=13% Similarity=0.134 Sum_probs=176.1
Q ss_pred ccCCCceEEEEEEEeeCCCCCeEEEEEEC--CEEcc-----------------CCCcEEEEEE--cCeEEEEEcCCCCcc
Q psy2166 214 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--GKPIE-----------------ASHRIRTVHA--FGMVVLEILGTKIED 272 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~p~~~i~W~k~--g~~l~-----------------~~~~~~~~~~--~~~~~L~i~~~~~~d 272 (805)
.+.+|+.++|.|.+.....+.+.+.|||+ |..+. ...++.+..+ .+...|.|.+++.+|
T Consensus 11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D 90 (344)
T 1za6_B 11 VVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLRSED 90 (344)
T ss_dssp EECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred EEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCCccc
Confidence 47899999999998532224688999996 43221 1245555443 346789999999999
Q ss_pred cEEEEEEEEcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCC-cEEEEEECCEEccCCC
Q psy2166 273 TGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE-LKVEWFHNGKPIFHKN 351 (805)
Q Consensus 273 ~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~-~~v~W~~~g~~l~~~~ 351 (805)
+|.|+|.+.|..+.......|.|..... .+|.+........ +.+|+.++|.|.+.| ..|. +.|.|+++|..+....
T Consensus 91 ~G~Y~C~~~n~~~~~~~~~~l~V~~~~~-~~P~i~~~~~~~~-~~~g~~v~L~C~~~g-~~P~~~~v~W~k~g~~~~~~~ 167 (344)
T 1za6_B 91 TAVYFCTRSLNMAYWGQGTLVTVSSAST-KGPSVFPLAPSSK-STSGGTAALGCLVKD-YFPEPVTVSWNSGALTSGVHT 167 (344)
T ss_dssp CEEEEEEETTTTCEECCCEEEEECSSCC-BCCEEEEECCSCT-TTSSSEEEEEEEEEE-EBSSCCCEEETTTTBCTTEEE
T ss_pred CEEEEEEEecCcceecCcEEEEEecCCC-CCCeEEEcccccc-ccCCCcEEEEEEEee-EECCCeEEEEecCCccCceeE
Confidence 9999999999655544556677653221 3455544333333 679999999999984 3354 7999999997642110
Q ss_pred ceEEEEeC----cEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCc
Q psy2166 352 RVKMVSDF----GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPV 427 (805)
Q Consensus 352 ~~~~~~~~----~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 427 (805)
.......+ ....|.|..+..+| |.|+|.|.|..+.......+.+... ++.....+
T Consensus 168 ~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~--~~~~~~~~------------------ 226 (344)
T 1za6_B 168 FPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSC--DKTHTCPP------------------ 226 (344)
T ss_dssp CCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC----------------------------
T ss_pred CCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeeccccc--ccccccCC------------------
Confidence 00000111 12368898888878 9999999999886544433321100 00000000
Q ss_pred cccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCccc
Q psy2166 428 AQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQ 507 (805)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~ 507 (805)
|.+. ...........+|.+....+....
T Consensus 227 -------------------------------------------~~~~---------~~l~~~~~~~~~P~v~~~~~~~~~ 254 (344)
T 1za6_B 227 -------------------------------------------CGGG---------SSGGGSGGQPREPQVYTLPPSRDE 254 (344)
T ss_dssp ----------------------------------------------------------------CCBCCEEEEECCCGGG
T ss_pred -------------------------------------------CCCC---------ccccccCCCCcCCEEEEeCCChHh
Confidence 0000 000000122467777765544432
Q ss_pred ccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEE--EeeCC---EEEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT--FHDFG---IVILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~--~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
+ +|..++|.|.+.++.+|.+.++|+|||..+........ ..++. .+.|.|.....+|+|.|+|.|.|....
T Consensus 255 ~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~~~~l~ 330 (344)
T 1za6_B 255 L-TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 330 (344)
T ss_dssp G-GSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEEEEEEECTTST
T ss_pred c-cCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEEEEEChHHccCCCeEEEEEEcCCCC
Confidence 3 46669999999964334679999999998864322111 22222 234677766667899999999997654
|
| >2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=201.35 Aligned_cols=191 Identities=17% Similarity=0.311 Sum_probs=156.7
Q ss_pred CCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCC-CceEEEe-cCcEEEEEEcccccCCCeEEEE
Q psy2166 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG-SRFKTTA-DFGFVTLDLTEVYDRDQGIYTC 141 (805)
Q Consensus 64 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~-~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C 141 (805)
.+|.|...+. .+.+.+|+.++|.|.+. +.|.+.|.|+|+|..+... .++.+.. +++.++|.|.+++.+|+|.|+|
T Consensus 3 ~~P~~~~~~~-~~~v~~G~~v~l~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 79 (197)
T 2j8h_A 3 MAPHFKEELR-NLNVRYQSNATLVCKVT--GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQV 79 (197)
T ss_dssp CCCEEEECCC-CEEEETTSCEEEEEEEE--CSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEE
T ss_pred CCCEEEEcCC-ccEEcCCCEEEEEEEEe--ecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEE
Confidence 4677776654 78999999999999998 6888999999999998764 4666553 5667799999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceE
Q psy2166 142 RAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIA 221 (805)
Q Consensus 142 ~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~ 221 (805)
.+.|..|.......|.|..++.+. .|.+...+... .+.+|+.+
T Consensus 80 ~~~n~~g~~~~~~~l~V~~~p~~~------------------------------------~~~~~~~~~~~-~~~~g~~~ 122 (197)
T 2j8h_A 80 RATNQGGSVSGTASLEVEVPAKIH------------------------------------LPKTLEGMGAV-HALRGEVV 122 (197)
T ss_dssp EEEETTEEEEEEEEEEEEEEEEEC------------------------------------CSSCBTTBEEE-EEETTCCC
T ss_pred EEEECCCceeEEEEEEEcCCCcCC------------------------------------CCccccccCeE-EEeCCCEE
Confidence 999999988888888887654321 12222222222 36789999
Q ss_pred EEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcC-CCCcccEEEEEEEEcCCeeEEEEEEEEEe
Q psy2166 222 HFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILG-TKIEDTGVYTCRATNKWGQAEISVNLECV 296 (805)
Q Consensus 222 ~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~-~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~ 296 (805)
.|.|.+ .+.|.+.+.|+++|..+....++.+........|.|.+ ++.+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 123 ~l~C~~--~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 196 (197)
T 2j8h_A 123 SIKIPF--SGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196 (197)
T ss_dssp EEEEEE--EEESCCEEEEEESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EEEEEE--EecCCCcEEEEECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence 999998 57888999999999999888787776666778999999 99999999999999999999888888875
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-23 Score=199.21 Aligned_cols=182 Identities=24% Similarity=0.304 Sum_probs=136.8
Q ss_pred CCCceEecCCCcccccC-CCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEE
Q psy2166 494 EAPKFITQISDVTQLKE-GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECR 572 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~-G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 572 (805)
.+|.+.... ... +.+ |+.++|.|.+.+.+.|.+.++|+|+|..+..+.... ....
T Consensus 2 ~~P~i~~~~-~~~-v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~----------------- 57 (190)
T 2wv3_A 2 NEPRIVTSE-EVI-IRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA-----SNME----------------- 57 (190)
T ss_dssp -CCEEEECC-CEE-CCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC-----SEEE-----------------
T ss_pred CCCcccccc-eEE-EccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe-----ccEE-----------------
Confidence 467776643 333 556 999999999995333338999999999876542111 1122
Q ss_pred EEcCCcceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcc
Q psy2166 573 ATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652 (805)
Q Consensus 573 a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 652 (805)
|.|.+++.+|+|.|+|.|.|. |.
T Consensus 58 --------------------------------------------------------L~i~~~~~~d~G~Y~C~~~n~-~~ 80 (190)
T 2wv3_A 58 --------------------------------------------------------YRINKPRAEDSGEYHCVYHFV-SA 80 (190)
T ss_dssp --------------------------------------------------------EEESSCCGGGCEEEEEEEEET-TE
T ss_pred --------------------------------------------------------EEEecCCcccCEEEEEEEEeC-Cc
Confidence 556666666666666666666 55
Q ss_pred eEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEE--
Q psy2166 653 DVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY-- 730 (805)
Q Consensus 653 ~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~-- 730 (805)
....+.|.|. .+|.|...+.+. .+.+|+.+.|.|.+. |+|.|.+.|++
T Consensus 81 ~~~~~~l~V~---------------------------~~p~~~~~~~~~-~~~~g~~v~l~C~~~--g~p~p~i~W~~~~ 130 (190)
T 2wv3_A 81 PKANATIEVK---------------------------AAPDITGHKRSE-NKNEGQDAMMYCKSV--GYPHPEWMWRKKE 130 (190)
T ss_dssp EEEEEEEEEE---------------------------CCCEEEEECSEE-EEETTSCEEEEEEEE--CSSCCEEEEEEEE
T ss_pred ccccEEEEEe---------------------------cCCcccccCCcc-eeeCCCcEEEEEEeC--ccCCCceEEEEcC
Confidence 5556666665 356666666666 788999999999998 99999999999
Q ss_pred CCEEcc---CCCCeEEEeeCcEEEEEEcCCC-CCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 731 NGKPIE---ASHRIRTVHAFGMVVLEILGTK-IEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 731 ~g~~l~---~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
+|..+. .+.++.+..+++...|.|.++. .+|+|.|+|.|.|.+|....++.|.|.+
T Consensus 131 ~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~V 190 (190)
T 2wv3_A 131 NGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVRV 190 (190)
T ss_dssp TTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred CCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEEC
Confidence 888775 5677777777777899999999 7999999999999999999999999864
|
| >3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.8e-24 Score=204.70 Aligned_cols=200 Identities=17% Similarity=0.231 Sum_probs=145.4
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecC--cEEEEEEcccccCCCeEEEEE
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADF--GFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
.|.|...+ ++.|.+|+.+.|.|.+.. +.|.+.|+|+|||.+|..+.++.+..++ +.++|.|.+++.+|+|.|+|.
T Consensus 3 ~p~~~~~~--~~~v~eg~~v~l~c~~~~-~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~ 79 (207)
T 3rbs_A 3 DPFTKSEL--AVEILEKGQVRFWMQAEK-LSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQ 79 (207)
T ss_dssp ---CCEEE--EEEECGGGCEEEEEECSC-CCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEE
T ss_pred CCeeecCC--ceEEEeCCeEEEEEEEec-CCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEE
Confidence 46666655 578999999999999973 4799999999999999998888887665 778899999999999999999
Q ss_pred EEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEE
Q psy2166 143 AWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAH 222 (805)
Q Consensus 143 a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~ 222 (805)
|.| |.......+.+....... .....+...... ....+|.|...+. ..+.+|+.+.
T Consensus 80 a~N--g~a~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-------~~~~~P~~~~~~~--~~v~~g~~v~ 135 (207)
T 3rbs_A 80 LQD--GKATNHSTVVLVGDVFKK-------------LQKEAEFQRQEW-------IRKQGPHFVEYLS--WEVTGECNVL 135 (207)
T ss_dssp EEE--TTEEEEEEEEECTHHHHH-------------HHHHHHHHHHHH-------HHHTSSEEEEEEE--EEEETTTEEE
T ss_pred EEC--CCeEEEEEEEEEccchhh-------------hccccccccccc-------ccCCCCceEecCC--cEEcCCCcEE
Confidence 999 444444444322110000 000000000000 0003577776653 3578999999
Q ss_pred EEEEEeeCCC-CCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEE
Q psy2166 223 FEASLIPVGD-QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 295 (805)
Q Consensus 223 l~C~~~~~~~-p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v 295 (805)
|.|.+ .+. |.|.|+|+|+|.+|....++ ....+...|.|.+++.+|+|.|+|.|.|..|....++.|..
T Consensus 136 l~C~v--~g~~P~p~i~W~k~g~~l~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~ 205 (207)
T 3rbs_A 136 LKCKV--ANIKKETHIVWYKDEREISVDEKH--DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205 (207)
T ss_dssp EEEEE--ESCCTTCEEEEEETTEEECCCCCC--CCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEE--eCCCCCCEEEEEECCEECCCCCce--EcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEec
Confidence 99998 577 89999999999999776553 22344568999999999999999999999999998888764
|
| >3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-23 Score=199.31 Aligned_cols=190 Identities=19% Similarity=0.272 Sum_probs=158.9
Q ss_pred CCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEE
Q psy2166 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRA 143 (805)
Q Consensus 64 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 143 (805)
.+|.|...+. .+.+.+|+.++|.|.+. +.|.+.+.|+|++..+....++.+..++...+|.|.+++.+|+|.|+|.+
T Consensus 6 ~~P~~~~~~~-~~~v~~G~~v~l~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 82 (197)
T 3lcy_A 6 EAPGIRKEMK-DVTTKLGEAAQLSCQIV--GRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIA 82 (197)
T ss_dssp EEEEEEECCC-CEEEETTSEEEEEEEEE--EESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEE
T ss_pred CCCcccccCC-ceEEeCCCcEEEEEEEe--cCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEE
Confidence 4566766554 78999999999999998 57888999999999999889999998888889999999999999999999
Q ss_pred EeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEE
Q psy2166 144 WNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHF 223 (805)
Q Consensus 144 ~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l 223 (805)
.|..|.......|.|..++...... .......+.+|+.+.|
T Consensus 83 ~n~~~~~~~~~~l~v~~~p~~~~~~---------------------------------------~~~~~~~~~~g~~~~l 123 (197)
T 3lcy_A 83 TNEVGEVETSSKLLLQATPQFHPGY---------------------------------------PLKEKYYGAVGSTLRL 123 (197)
T ss_dssp ECSSCEEEEEEEEEEEEEEEECTTS---------------------------------------CCCSEEEEETTSCEEE
T ss_pred ECCCCceeEEEEEEEEcCCCCCCCc---------------------------------------cCCcceeecCCCeEEE
Confidence 9999888888888887654321100 0011123678999999
Q ss_pred EEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCC-cccEEEEEEEEcCCeeEEEEEEEEEec
Q psy2166 224 EASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKI-EDTGVYTCRATNKWGQAEISVNLECVD 297 (805)
Q Consensus 224 ~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~n~~g~~~~~~~l~v~~ 297 (805)
.|.+ .+.|.+.+.|+++|..+....++..........|.|.++.. +|+|.|+|.|.|..|..+..+.|.|.+
T Consensus 124 ~C~~--~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 196 (197)
T 3lcy_A 124 HVMY--IGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD 196 (197)
T ss_dssp EEEE--EEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred EEEE--eeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence 9998 57888999999999999988888777666678999999995 899999999999999999998888764
|
| >2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-22 Score=194.86 Aligned_cols=197 Identities=23% Similarity=0.317 Sum_probs=151.8
Q ss_pred CCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEE-eCcEEEEEEccc-CcCCceEEEE
Q psy2166 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVS-DFGFVVMDIAYV-QSHDSGEYVC 379 (805)
Q Consensus 302 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~-~~~~~~l~i~~v-~~~d~G~Y~C 379 (805)
.+|.+...+.+.. +.+|+.+.|.|.+. +.|.+.|.|+++|..+.......... +.....|.|.++ ..+|+|.|+|
T Consensus 5 ~~P~~~~~p~~~~-v~~G~~v~L~C~~~--g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C 81 (212)
T 2yd6_A 5 TPPRFTRTPVDQT-GVSGGVASFICQAT--GDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYEC 81 (212)
T ss_dssp EEEEEEECCCCEE-EETTSCEEEEEEEE--EESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEE
T ss_pred CCCeEEeCcceeE-EecCCeEEEEEEEe--eCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEE
Confidence 4667776666654 88999999999998 77889999999999987654333322 234567999999 4999999999
Q ss_pred EEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEE
Q psy2166 380 RAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEA 459 (805)
Q Consensus 380 ~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (805)
.|.|..|.....+.|.|...+..
T Consensus 82 ~a~n~~g~~~~~~~l~V~~~~~~--------------------------------------------------------- 104 (212)
T 2yd6_A 82 VASNNVGEISVSTRLTVLREDQI--------------------------------------------------------- 104 (212)
T ss_dssp EEEETTEEEEEEEEEEEECGGGC---------------------------------------------------------
T ss_pred EEEcCCCcEEEEEEEEEeccCcc---------------------------------------------------------
Confidence 99999999888888888643210
Q ss_pred EEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEc
Q psy2166 460 RLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL 539 (805)
Q Consensus 460 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l 539 (805)
....|.+...+.... +.+|+.++|.|.+. |.|.+.++|+++|..+
T Consensus 105 --------------------------------~~~~p~~~~~~~~~~-~~~g~~v~l~C~~~--g~p~p~v~W~~~g~~l 149 (212)
T 2yd6_A 105 --------------------------------PRGFPTIDMGPQLKV-VERTRTATMLCAAS--GNPDPEITWFKDFLPV 149 (212)
T ss_dssp --------------------------------CTTCCEEEECCCCEE-EETTSCEEEEEEEE--CSSCCEEEEEETTEEC
T ss_pred --------------------------------CCCcceeecCCccee-EecCCCEEEEEEec--CCCCCeEEEEECCccc
Confidence 023456665554443 78999999999998 7789999999999999
Q ss_pred cCC---CceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceE-EEEEEEEeeeee
Q psy2166 540 PHG---HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDV-TKASLKCVSKTN 593 (805)
Q Consensus 540 ~~~---~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~~~ 593 (805)
... .++.....+....|.|.++..+|+|.|+|.|.|..|... ..+.|.|...+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~~ 207 (212)
T 2yd6_A 150 DTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKH 207 (212)
T ss_dssp ------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred cCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEeccc
Confidence 753 566666666778899999999999999999999999875 457777776543
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-22 Score=196.09 Aligned_cols=172 Identities=17% Similarity=0.189 Sum_probs=140.9
Q ss_pred CCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeecccccccc-------
Q psy2166 599 QLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILES------- 671 (805)
Q Consensus 599 ~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~------- 671 (805)
|.|.+.|+|+|..+..+.++.+...++...|.|.++..+|+|.|+|.|.|..|.....+.|.|...+......
T Consensus 31 p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~ 110 (212)
T 2r15_A 31 EDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAA 110 (212)
T ss_dssp SSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEeeccchhhhccccCccc
Confidence 5789999999999999899998888888899999999999999999999999888877777664311100000
Q ss_pred ccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEee-CcEE
Q psy2166 672 QLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA-FGMV 750 (805)
Q Consensus 672 ~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-~~~~ 750 (805)
..+. ..|+.+...+... .+.+|+.+.|.|.+. |.|.|.|.|+|+|..+..+.++.+... ++..
T Consensus 111 ~~~~-------------~~p~~~~~~~~~~-~v~~g~~~~l~C~~~--g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~ 174 (212)
T 2r15_A 111 IAEK-------------NRARVLGGLPDVV-TIQEGKALNLTCNVW--GDPPPEVSWLKNEKALAQTDHCNLKFEAGRTA 174 (212)
T ss_dssp HHHH-------------HSCEEEEBCCSEE-EEETTCCEEEEEEEE--CSSCCEEEEEETTEEECCCSSEEEEEETTTEE
T ss_pred cccc-------------CCCcccccCCCcE-EEccCCeEEEEEEEc--CCCCceEEEEECCeECccCCCEEEEEcCCCEE
Confidence 0000 0234444445556 899999999999999 999999999999999999888887666 6678
Q ss_pred EEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 751 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 751 ~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
.|.|.++..+|+|.|+|.|.|.+|..+.++.|.|.+
T Consensus 175 ~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 210 (212)
T 2r15_A 175 YFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 210 (212)
T ss_dssp EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEc
Confidence 999999999999999999999999999999998864
|
| >2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-22 Score=194.00 Aligned_cols=193 Identities=24% Similarity=0.419 Sum_probs=152.7
Q ss_pred CCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEcc-CCCceEEEEe-CcEEEEEEcccCc-CCceEEE
Q psy2166 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIF-HKNRVKMVSD-FGFVVMDIAYVQS-HDSGEYV 378 (805)
Q Consensus 302 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~-~~~~~~~~~~-~~~~~l~i~~v~~-~d~G~Y~ 378 (805)
.+|.+...+.... +.+|+.++|.|.+. +.|.+.+.|+++|..+. ...++.+... ++...|.|.++.. +|+|.|+
T Consensus 5 ~pP~~~~~p~~~~-v~~G~~v~l~C~~~--g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~ 81 (212)
T 2yd1_A 5 HPPEIIRKPQNQG-VRVGGVASFYCAAR--GDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYE 81 (212)
T ss_dssp CCCEEEECCCCEE-EETTSCEEEEEEEE--CSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEE
T ss_pred CCCEEEcCCCceE-EecCCEEEEEEEEc--cCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEE
Confidence 6788888777765 89999999999998 88889999999999987 4556665543 5557899999999 9999999
Q ss_pred EEEEeCcee-eEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEE
Q psy2166 379 CRAWNKYGE-DFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHF 457 (805)
Q Consensus 379 C~a~n~~g~-~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (805)
|.|.|..|. ....+.|.|...+..
T Consensus 82 C~~~n~~g~~~~~~~~l~V~~~~~~------------------------------------------------------- 106 (212)
T 2yd1_A 82 CVAENGVGDAVSADATLTIYEGDKT------------------------------------------------------- 106 (212)
T ss_dssp EEEECSSSCEEEEEEEEEEECTTCS-------------------------------------------------------
T ss_pred EEEEeCCCCeEEeeEEEEEecccCC-------------------------------------------------------
Confidence 999999988 677788887643210
Q ss_pred EEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCE
Q psy2166 458 EARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGK 537 (805)
Q Consensus 458 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~ 537 (805)
...+|.+...+.... +.+|+.++|.|.+. |.|.+.|+|+++|.
T Consensus 107 ----------------------------------~~~~p~~~~~~~~~~-~~~g~~v~l~C~~~--g~p~p~i~W~~~~~ 149 (212)
T 2yd1_A 107 ----------------------------------PAGFPVITQGPGTRV-IEVGHTVLMTCKAI--GNPTPNIYWIKNQT 149 (212)
T ss_dssp ----------------------------------CTTCCEEEECCCCEE-EETTCCEEECCEEE--CSSCCEEEEEETTE
T ss_pred ----------------------------------CCCCCeeEeCCCceE-eecCCeEEEEEEec--cCCCCeEEEEECCe
Confidence 023466666554443 88999999999998 77889999999999
Q ss_pred EccCC-CceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEE-EEEEEeeeee
Q psy2166 538 KLPHG-HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK-ASLKCVSKTN 593 (805)
Q Consensus 538 ~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~ 593 (805)
.+... .++.+ . ++ .|.|.++..+|+|.|+|.|.|..|..... +.|.|.....
T Consensus 150 ~~~~~~~~~~~-~-~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~~ 203 (212)
T 2yd1_A 150 KVDMSNPRYSL-K-DG--FLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRV 203 (212)
T ss_dssp ECCTTSTTEEE-E-TT--EEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred EcccCCCeEEc-c-CC--eEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEeccc
Confidence 99763 34432 2 23 69999999999999999999999998765 7898887543
|
| >2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-22 Score=189.09 Aligned_cols=179 Identities=23% Similarity=0.317 Sum_probs=144.9
Q ss_pred CCeEEecCCCcccccC-CCeEEEEEEEeecCCCC--cEEEEEECCEEccCCCceEEEEeCcEEEEEEcccCcCCceEEEE
Q psy2166 303 PPKFTSHIKSLEGLKD-GDSAHFECTLTPVNDPE--LKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVC 379 (805)
Q Consensus 303 ~p~~~~~~~~~~~~~~-g~~~~l~C~~~~~~~p~--~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C 379 (805)
+|.+.... ... +.+ |+.++|.|.+. +.|. +.+.|+++|..+....... ....|.|.++..+|+|.|+|
T Consensus 3 ~P~i~~~~-~~~-v~~~G~~v~l~C~~~--~~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C 73 (190)
T 2wv3_A 3 EPRIVTSE-EVI-IRDSLLPVTLQCNLT--SSSHTLMYSYWTKNGVELTATRKNA-----SNMEYRINKPRAEDSGEYHC 73 (190)
T ss_dssp CCEEEECC-CEE-CCCSSSCEEEEEEEE--ECSSCEEEEEEEETTEECTTCCBCC-----SEEEEEESSCCGGGCEEEEE
T ss_pred CCcccccc-eEE-EccCCceEEEEEEec--cCCCCceEEEEEECCEECcccceEe-----ccEEEEEecCCcccCEEEEE
Confidence 56666533 222 556 99999999998 5554 8999999999987654332 34579999999999999999
Q ss_pred EEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEE
Q psy2166 380 RAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEA 459 (805)
Q Consensus 380 ~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (805)
.+.|. |.....+.|.|.
T Consensus 74 ~~~n~-~~~~~~~~l~V~-------------------------------------------------------------- 90 (190)
T 2wv3_A 74 VYHFV-SAPKANATIEVK-------------------------------------------------------------- 90 (190)
T ss_dssp EEEET-TEEEEEEEEEEE--------------------------------------------------------------
T ss_pred EEEeC-CcccccEEEEEe--------------------------------------------------------------
Confidence 99999 877777888774
Q ss_pred EEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEE--CCE
Q psy2166 460 RLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFY--NGK 537 (805)
Q Consensus 460 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~--~g~ 537 (805)
.+|.+...+.... +.+|+.++|.|.+. |.|.+.++|++ +|.
T Consensus 91 ----------------------------------~~p~~~~~~~~~~-~~~g~~v~l~C~~~--g~p~p~i~W~~~~~g~ 133 (190)
T 2wv3_A 91 ----------------------------------AAPDITGHKRSEN-KNEGQDAMMYCKSV--GYPHPEWMWRKKENGV 133 (190)
T ss_dssp ----------------------------------CCCEEEEECSEEE-EETTSCEEEEEEEE--CSSCCEEEEEEEETTE
T ss_pred ----------------------------------cCCcccccCCcce-eeCCCcEEEEEEeC--ccCCCceEEEEcCCCc
Confidence 3455555544433 88999999999998 78889999999 888
Q ss_pred Ecc---CCCceEEEeeCCEEEEEEccCC-CCCCEEEEEEEEcCCcceEEEEEEEEee
Q psy2166 538 KLP---HGHRYRTFHDFGIVILDILYCY-EENSGVYECRATNKYGSDVTKASLKCVS 590 (805)
Q Consensus 538 ~l~---~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 590 (805)
.+. .+.++.+..++....|.|.++. .+|+|.|+|.|.|..|.....+.|.|.+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~V 190 (190)
T 2wv3_A 134 FEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVRV 190 (190)
T ss_dssp EEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred eeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEEC
Confidence 875 5667877777777889999999 6999999999999999999999998863
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=199.05 Aligned_cols=184 Identities=24% Similarity=0.364 Sum_probs=141.0
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCC-CceEEEeeCCEEEEEEccCCCCCCEEEEE
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG-HRYRTFHDFGIVILDILYCYEENSGVYEC 571 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 571 (805)
..+|.|...+... .+.+|++++|.|.+. +.|.+.+.|+++|..+... .++.
T Consensus 5 ~~~P~i~~~~~~~-~~~~G~~v~l~C~~~--~~p~~~i~W~~~~~~~~~~~~~~~------------------------- 56 (192)
T 2iep_A 5 PKAPVITTPLETV-DALVEEVATFMCAVE--SYPQPEISWTRNKILIKLFDTRYS------------------------- 56 (192)
T ss_dssp CEEEEESSCCCEE-EEETTSCEEEECCEE--EESCCEEEEEETTEECCTTCTTEE-------------------------
T ss_pred CCCceeecCccce-eeeCCCcEEEEeeCC--CCCCCeEEEEECCEEccccCccEE-------------------------
Confidence 4567666555543 489999999999998 5678899999999876421 1111
Q ss_pred EEEcCCcceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCc
Q psy2166 572 RATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG 651 (805)
Q Consensus 572 ~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 651 (805)
+..++. .|.|.+++.+|+|.|+|.+.|..|
T Consensus 57 ------------------------------------------------~~~~~~--~L~i~~~~~~d~G~Y~C~~~~~~~ 86 (192)
T 2iep_A 57 ------------------------------------------------IRENGQ--LLTILSVEDSDDGIYCCTANNGVG 86 (192)
T ss_dssp ------------------------------------------------EEGGGT--EEEESSCCGGGCEEEEEEEECSSS
T ss_pred ------------------------------------------------EcCCcc--EEEEcCCCcccCeEEEEEEEcCCC
Confidence 111111 277888888888888888888877
Q ss_pred c-eEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEE
Q psy2166 652 S-DVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY 730 (805)
Q Consensus 652 ~-~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~ 730 (805)
. ....+.|.|.. +|.+...+... .+.+|+.+.|.|.+. |.|.+.++|++
T Consensus 87 ~~~~~~~~l~v~~---------------------------~p~~~~~~~~~-~~~~g~~~~l~C~~~--g~p~~~v~W~~ 136 (192)
T 2iep_A 87 GAVESCGALQVKM---------------------------KPKITRPPINV-KIIEGLKAVLPCTTM--GNPKPSVSWIK 136 (192)
T ss_dssp CCEEEEEEEEEEE---------------------------EEEEEECCCCE-EEETTSCEEECCEEE--EESCCEEEEEE
T ss_pred ceeEeEEEEEEEe---------------------------CCccccCCcce-EEeCCCcEEEEEEEe--ccCCceEEEEe
Confidence 7 44566777774 45666666666 899999999999998 89999999999
Q ss_pred CCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccE-EEEEEEEEEEe
Q psy2166 731 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA-EISVNLECVVW 787 (805)
Q Consensus 731 ~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~~ 787 (805)
+|..+....++.+..++ .|.|.++..+|+|.|+|.|.|..|.. +.++.|.|.+.
T Consensus 137 ~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~p 191 (192)
T 2iep_A 137 GDSALRENSRIAVLESG---SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVF 191 (192)
T ss_dssp TTEECCCCSSEEECTTS---CEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred CCEEccCCCcEEEecCC---cEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeC
Confidence 99999888877654433 59999999999999999999999987 45688888654
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-22 Score=192.92 Aligned_cols=186 Identities=16% Similarity=0.214 Sum_probs=136.9
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc--eEEEeeCCEEEEEEccCCCCCCEEEEE
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR--YRTFHDFGIVILDILYCYEENSGVYEC 571 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C 571 (805)
++|.|...+.+.. +.+|++++|.|.+.. +.|.+.++|+|||..+..... +.+... ....+.|..
T Consensus 1 e~~~~~~~p~~~~-v~~G~~v~l~C~~~~-~~p~~~v~W~~~g~~l~~~~~~~~~~~~~------------~~~~~~~~~ 66 (195)
T 2c5d_C 1 EESPFVGNPGNIT-GARGLTGTLRCQLQV-QGEPPEVHWLRDGQILELADSTQTQVPLG------------EDEQDDWIV 66 (195)
T ss_dssp -CCSEEECCCCEE-ECTTCCEEEEEEEEE-ESSCCCCEEEETTEECCSCEEEEEEEECS------------SSTTSEEEE
T ss_pred CCCeeccChhheE-EecCCcEEEeccccc-CCCCcEEEEEECCEEcccCCCCceEEEEc------------cccccceee
Confidence 3688888777765 999999999999983 357779999999999876521 211110 111122221
Q ss_pred EEEcCCcceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCc
Q psy2166 572 RATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG 651 (805)
Q Consensus 572 ~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 651 (805)
. ..|.|.+++.+|+|.|+|.|.|..|
T Consensus 67 ~------------------------------------------------------~~L~i~~~~~~d~G~Y~C~~~~~~~ 92 (195)
T 2c5d_C 67 V------------------------------------------------------SQLRITSLQLSDTGQYQCLVFLGHQ 92 (195)
T ss_dssp E------------------------------------------------------EEEEESSCCSTTCEEEEEEEEETTE
T ss_pred c------------------------------------------------------cEEEEEeccccCCcEEEEEEEeCCC
Confidence 0 0166677777777777777777666
Q ss_pred ceEEE-EEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCe-EEEEE
Q psy2166 652 SDVTK-ASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFL 729 (805)
Q Consensus 652 ~~~~~-~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~-~v~W~ 729 (805)
..... +.|.|. .+|.|...+.+. .+.+|+.+.|.|.+. |.|.| .|.|+
T Consensus 93 ~~~~~~~~l~V~---------------------------~~p~~~~~~~~~-~~~~g~~~~l~C~~~--g~p~p~~v~W~ 142 (195)
T 2c5d_C 93 TFVSQPGYVGLE---------------------------GLPYFLEEPEDR-TVAANTPFNLSCQAQ--GPPEPVDLLWL 142 (195)
T ss_dssp EEECCCEEEEEC---------------------------CSCEEEECCCCE-EECTTCCEEEEEEEE--CSSCCCEEEEE
T ss_pred ceecccEEEEEe---------------------------cCCeEEcCCCcE-EEcCCCEEEEEeECC--CCCCCCEEEEE
Confidence 54433 566665 467777777777 899999999999998 99999 99999
Q ss_pred ECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEE-EEEEEEE
Q psy2166 730 YNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE-ISVNLEC 784 (805)
Q Consensus 730 ~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~-~~~~l~V 784 (805)
|+|..+...... .....|.|.++. |+|.|+|.|.|.+|... .++.|.|
T Consensus 143 ~~~~~~~~~~~~-----~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 143 QDAVPLATAPGH-----GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp ESSCBSSSSTTS-----SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred ECCEeccCCCCc-----CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 999998876543 233479999998 89999999999999886 7888888
|
| >2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-22 Score=194.24 Aligned_cols=197 Identities=21% Similarity=0.300 Sum_probs=152.7
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCcEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEE
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 395 (805)
...++.+.|.|.+.+ ..|.+.+.|+++|..+....++.+...+....|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 14 ~c~~~~~~l~C~~~~-~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~ 92 (212)
T 2r15_A 14 QSTAEGIQLYSFVTY-YVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLS 92 (212)
T ss_dssp EECSSEEEEEEEBSS-CCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEC
T ss_pred EEcCceEEEEEEEec-cCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEE
Confidence 346788899999872 2568999999999999988888888888888899999999999999999999888877766665
Q ss_pred EEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEee
Q psy2166 396 CFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFS 475 (805)
Q Consensus 396 V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 475 (805)
|......+ .....+...
T Consensus 93 v~~~~~~~---------~~~~~~~~~------------------------------------------------------ 109 (212)
T 2r15_A 93 GQAYDEAY---------AEFQRLKQA------------------------------------------------------ 109 (212)
T ss_dssp HHHHHHHH---------HHHHHHHHH------------------------------------------------------
T ss_pred Eeeccchh---------hhccccCcc------------------------------------------------------
Confidence 43211000 000000000
Q ss_pred cccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEee-CCEE
Q psy2166 476 NFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD-FGIV 554 (805)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-~~~~ 554 (805)
......+|.+....+....+.+|+.++|.|.+. |.|.|.+.|+|+|..+..+.++.+... ++..
T Consensus 110 -------------~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~--g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~ 174 (212)
T 2r15_A 110 -------------AIAEKNRARVLGGLPDVVTIQEGKALNLTCNVW--GDPPPEVSWLKNEKALAQTDHCNLKFEAGRTA 174 (212)
T ss_dssp -------------HHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEE--CSSCCEEEEEETTEEECCCSSEEEEEETTTEE
T ss_pred -------------cccccCCCcccccCCCcEEEccCCeEEEEEEEc--CCCCceEEEEECCeECccCCCEEEEEcCCCEE
Confidence 000022455555555555689999999999999 789999999999999998888887666 6678
Q ss_pred EEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeee
Q psy2166 555 ILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSK 591 (805)
Q Consensus 555 ~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 591 (805)
.|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+
T Consensus 175 ~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P 211 (212)
T 2r15_A 175 YFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211 (212)
T ss_dssp EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred EEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEcc
Confidence 8999999999999999999999999999999988754
|
| >4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-23 Score=199.10 Aligned_cols=151 Identities=15% Similarity=0.096 Sum_probs=121.4
Q ss_pred CCCeEEEEECCEEcc-----------------CCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEE
Q psy2166 599 QLPEVEWFYNGKKLP-----------------HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 661 (805)
Q Consensus 599 ~~p~v~W~~~g~~l~-----------------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 661 (805)
|.|.++|+|+|..+. ...++.+..+++...|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 24 p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V 103 (203)
T 4fa8_A 24 PEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSV 103 (203)
T ss_dssp TTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred CCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCeEEEEEEEcCCCcEEEEEEEEe
Confidence 778999999873221 123456666777889999999999999999999999999999999999
Q ss_pred eeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEc----cC
Q psy2166 662 VSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPI----EA 737 (805)
Q Consensus 662 ~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l----~~ 737 (805)
. .||.+...+.+. .+.+|+.++|.|.+. |.|.|.|+|++++..+ ..
T Consensus 104 ~---------------------------~p~~~~~~~~~~-~v~~g~~~~l~C~~~--G~P~P~v~W~~~~~~~~~~~~~ 153 (203)
T 4fa8_A 104 V---------------------------KPLTLSVHSERS-QFPDFSVLTVTCTVN--AFPHPHVQWLMPEGVEPAPTAA 153 (203)
T ss_dssp E---------------------------EEEEEEEEEEEC-CSSCSCCEEEEEEEE--EESCCEEEECCC----------
T ss_pred c---------------------------CCceeeecceeE-EEcCCCEEEEEEEcC--CCCCCEEEEEECCeeecCcccc
Confidence 7 367777777777 899999999999999 9999999999876433 23
Q ss_pred CCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEE
Q psy2166 738 SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 779 (805)
Q Consensus 738 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~ 779 (805)
+.++.+..++....|.|.+++.+|+|.|+|.|+|.+|+++..
T Consensus 154 ~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v 195 (203)
T 4fa8_A 154 NGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV 195 (203)
T ss_dssp --CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred cceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence 456666666666678889999999999999999999988753
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-22 Score=191.81 Aligned_cols=183 Identities=23% Similarity=0.394 Sum_probs=130.7
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccC--CCceEEEeeCCEEEEEEccCCCCCCEEEEEE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPH--GHRYRTFHDFGIVILDILYCYEENSGVYECR 572 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~--~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 572 (805)
+|.|...+.+.. +.+|++++|.|.+. +.|.+.+.|+++|..+.. ..++....++ .|.|.+++.+|+|.|+|.
T Consensus 2 ~~~~~~~~~~~~-v~~G~~v~l~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~ 75 (189)
T 2v5t_A 2 MLTFREVVSPQE-FKQGEDAEVVCRVS--SSPAPAVSWLYHNEEVTTISDNRFAMLANN---NLQILNINKSDEGIYRCE 75 (189)
T ss_dssp CCEEEECCSSEE-EETTSCEEECCEEE--CSSCCEEEEEC-----CBCCCTTEEECTTS---CEEETTCCGGGCEEEEEE
T ss_pred CceeeccCCCEE-EeCCCcEEEEEEEc--CCCCCEEEEEECCccceeccCCeEEEecCC---CEEEeeCCHhHCcEEEEE
Confidence 577777777665 89999999999998 678889999999988753 3344433222 377777777777777777
Q ss_pred EEcCCcceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcc
Q psy2166 573 ATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652 (805)
Q Consensus 573 a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 652 (805)
+.|..+.......
T Consensus 76 ~~~~~~~~~~~~~------------------------------------------------------------------- 88 (189)
T 2v5t_A 76 GRVEARGEIDFRD------------------------------------------------------------------- 88 (189)
T ss_dssp EEETTTTEEEEEE-------------------------------------------------------------------
T ss_pred EEEcCCCceEEEE-------------------------------------------------------------------
Confidence 7766543322111
Q ss_pred eEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCC--cccccCCCCeEEEEEEEeecCCCCeEEEEEE
Q psy2166 653 DVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQ--HLSNLSEGEIAHFEASLIPVGDQTMTVEFLY 730 (805)
Q Consensus 653 ~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~--~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~ 730 (805)
+.|.|.. +|.+...+. .. .+.+|+.+.|.|.+. |.|.|.|.|++
T Consensus 89 ----~~l~v~~---------------------------~p~~~~~~~~~~~-~~~~g~~v~l~C~~~--g~p~~~v~W~~ 134 (189)
T 2v5t_A 89 ----IIVIVNV---------------------------PPAISMPQKSFNA-TAERGEEMTFSCRAS--GSPEPAISWFR 134 (189)
T ss_dssp ----EEEEEEE---------------------------EEEEECSCCEEEE-ETTSCCCEEEECEEE--EESCCEEEEEE
T ss_pred ----EEEEecC---------------------------CCCcccccccccc-cccCCCcEEEEEEEc--cCCCCeEEEEE
Confidence 1122221 111111111 22 678899999999998 88999999999
Q ss_pred CCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 731 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 731 ~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
+|..+....++.+..+.+ .|.|.++..+|+|.|+|.|.|..|....++.|.|.+
T Consensus 135 ~g~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~v 188 (189)
T 2v5t_A 135 NGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188 (189)
T ss_dssp TTEECCCSSSEEEETTTT--EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CCEECcCCCcEEEecCCC--EEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence 999999888877655454 799999999999999999999999999999999975
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-22 Score=190.35 Aligned_cols=183 Identities=20% Similarity=0.297 Sum_probs=140.1
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCC-CcEEEEEE-CCEEccCC-CceEEEeeCCEEEEEEccCCCCCCEEEEE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDP-DLVVEWFY-NGKKLPHG-HRYRTFHDFGIVILDILYCYEENSGVYEC 571 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p-~~~v~W~~-~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 571 (805)
++.|...+.+.. +.+|++++|.|.+. +.| .+.++|++ +|..+... .++.+
T Consensus 2 p~~v~~~p~~~~-v~~G~~v~l~C~~~--~~~~~~~v~W~~~~g~~~~~~~~~~~~------------------------ 54 (191)
T 1epf_A 2 VLQVDIVPSQGE-ISVGESKFFLCQVA--GDAKDKDISWFSPNGEKLSPNQQRISV------------------------ 54 (191)
T ss_dssp -CCEEEESSSEE-EETTCCEEEEEEEC--CCSCCCEEEEECTTSCEECCBSSSEEE------------------------
T ss_pred ceEEEecCCCcE-EcCCCCEEEEEECC--CCCCCceEEEEeCCCccccCCCCeEEE------------------------
Confidence 456666666654 89999999999998 444 88999999 77655321 11100
Q ss_pred EEEcCCcceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCC-
Q psy2166 572 RATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKY- 650 (805)
Q Consensus 572 ~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~- 650 (805)
...++....|.|.++..+|+|.|+|.|.|..
T Consensus 55 ------------------------------------------------~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 86 (191)
T 1epf_A 55 ------------------------------------------------VWNDDDSSTLTIYNANIDDAGIYKCVVTAEDG 86 (191)
T ss_dssp ------------------------------------------------EEEETTEEEEEECSCCGGGCEEEEEEEEETTT
T ss_pred ------------------------------------------------EECCCCceEEEEccCCcccCEEEEEEEEcCCC
Confidence 0001233458899999999999999999988
Q ss_pred cceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEE
Q psy2166 651 GSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY 730 (805)
Q Consensus 651 g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~ 730 (805)
+.....+.|.|. .+|.+...+... .+.+|+.+.|.|.+. |.|.|.|.|+|
T Consensus 87 ~~~~~~~~l~v~---------------------------~~p~~~~~~~~~-~~~~g~~~~l~C~~~--g~p~~~v~W~~ 136 (191)
T 1epf_A 87 TQSEATVNVKIF---------------------------QKLMFKNAPTPQ-EFKEGEDAVIVCDVV--SSLPPTIIWKH 136 (191)
T ss_dssp EEEEEEEEEEEE---------------------------CCSEEEECCSSE-ECCTTSCEEECCEEE--CSSCCEEEEEE
T ss_pred cceEEEEEEEee---------------------------cCceEecCCCcE-eecCCCeEEEEEEEC--CCCCCEEEEEE
Confidence 555667777776 467777777777 899999999999999 99999999999
Q ss_pred CCEEccCC--CCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 731 NGKPIEAS--HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 731 ~g~~l~~~--~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
+|..+... .++.+.. .+ .|.|.++..+|+|.|+|.|.|..|.......+.|.
T Consensus 137 ~~~~~~~~~~~~~~~~~-~~--~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v~ 190 (191)
T 1epf_A 137 KGRDVILKKDVRFIVLS-NN--YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190 (191)
T ss_dssp TTEEGGGGCCTTEEECT-TS--CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred CCEEeeccCCceEEEec-CC--eEEECCCChhhCEEEEEEEEEecceeEEEEEEEEe
Confidence 99998754 3444333 33 69999999999999999999999877777777765
|
| >4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-23 Score=197.24 Aligned_cols=171 Identities=13% Similarity=0.055 Sum_probs=128.4
Q ss_pred CceecCCCcEEEEEEEecC-CCCCceEEEEECCEecC-----------------CCCceEEEecCcEEEEEEcccccCCC
Q psy2166 75 EFKLGEAQPLHLEAQVEPK-NDPNLKIEWIFNGKPLE-----------------LGSRFKTTADFGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~-~~p~~~v~W~k~g~~i~-----------------~~~~~~~~~~~~~~~L~I~~~~~~D~ 136 (805)
.+.+..|+.++|+|..... +.|.+.|+|+|+|..+. ...++.+..+++.++|.|.+++.+|+
T Consensus 2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 81 (203)
T 4fa8_A 2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 81 (203)
T ss_dssp CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence 4688999999999965321 67899999999874321 12356667777888999999999999
Q ss_pred eEEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccC
Q psy2166 137 GIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLS 216 (805)
Q Consensus 137 G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~ 216 (805)
|.|+|.|.|..|.......|.|..+ |.+...+... .+.
T Consensus 82 G~Y~C~a~n~~g~~~~~~~l~V~~p-----------------------------------------~~~~~~~~~~-~v~ 119 (203)
T 4fa8_A 82 GNYLCRMKLGETEVTKQEHLSVVKP-----------------------------------------LTLSVHSERS-QFP 119 (203)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEEE-----------------------------------------EEEEEEEEEC-CSS
T ss_pred eEEEEEEEcCCCcEEEEEEEEecCC-----------------------------------------ceeeecceeE-EEc
Confidence 9999999999999988888888643 3444444333 478
Q ss_pred CCceEEEEEEEeeCCCCCeEEEEEECCEEccC----CCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEE
Q psy2166 217 EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEA----SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 289 (805)
Q Consensus 217 ~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~ 289 (805)
+|+.++|.|.+ .|.|.|.|+|++++..+.. ..++....++....|.|.+++.+|+|.|+|.|.|..|.++.
T Consensus 120 ~g~~~~l~C~~--~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~ 194 (203)
T 4fa8_A 120 DFSVLTVTCTV--NAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHG 194 (203)
T ss_dssp CSCCEEEEEEE--EEESCCEEEECCC------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEE
T ss_pred CCCEEEEEEEc--CCCCCCEEEEEECCeeecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEE
Confidence 99999999998 6889999999987654432 23333333333456677899999999999999999998864
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-22 Score=199.39 Aligned_cols=199 Identities=20% Similarity=0.270 Sum_probs=129.9
Q ss_pred CCCCceEecC---CCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceE-EEeeCCEEEEEEccCCCCCCEE
Q psy2166 493 AEAPKFITQI---SDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR-TFHDFGIVILDILYCYEENSGV 568 (805)
Q Consensus 493 ~~~P~~~~~~---~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~-~~~~~~~~~L~i~~v~~~d~G~ 568 (805)
..+|.|..+. +....+.+|++++|.|.+. +.|.+.++|+|+|..+....+.. .........|.|.+++.+|+|.
T Consensus 9 ~~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 86 (241)
T 3grw_A 9 TGAPYWTRPERMDKKLLAVPAANTVRFRCPAA--GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGN 86 (241)
T ss_dssp --CCEESSGGGGSCCEEEEETTSEEEEECCEE--CSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEE
T ss_pred CCCceeEcCCCCCCcceEEcCCCeEEEEEEec--CCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEE
Confidence 3566666543 3344588999999999999 67888999999999986543221 0111111235566665566666
Q ss_pred EEEEEEcCCcceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEe
Q psy2166 569 YECRATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATN 648 (805)
Q Consensus 569 Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 648 (805)
|+|.|.|..|.....+.|.|
T Consensus 87 Y~C~~~~~~~~~~~~~~l~V------------------------------------------------------------ 106 (241)
T 3grw_A 87 YTCVVENKFGSIRQTYTLDV------------------------------------------------------------ 106 (241)
T ss_dssp EEEEEEETTEEEEEEEEEEE------------------------------------------------------------
T ss_pred EEEEEeecCCceEEEEEEEE------------------------------------------------------------
Confidence 66666555554444444443
Q ss_pred CCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeee-cCCcccccCCCCeEEEEEEEeecCCCCeEEE
Q psy2166 649 KYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTS-EFQHLSNLSEGEIAHFEASLIPVGDQTMTVE 727 (805)
Q Consensus 649 ~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~-~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~ 727 (805)
...+. .+|.+.. .+... .+.+|+.+.|.|.+. |.|.+.+.
T Consensus 107 -------------~~~~~-----------------------~~~~~~~~~~~~~-~~~~g~~v~L~C~~~--~~p~p~v~ 147 (241)
T 3grw_A 107 -------------LERSP-----------------------HRPILQAGLPANQ-TAVLGSDVEFHCKVY--SDAQPHIQ 147 (241)
T ss_dssp -------------ECCCC-----------------------CCCEEEECTTCSE-ECCTTCCEEEEEEEE--CSSCCEEE
T ss_pred -------------eccCC-----------------------CCceeecCCCccc-eecCCCEEEEEEEEe--cCCCCEEE
Confidence 32110 1222222 23444 788999999999998 99999999
Q ss_pred EEE----CCEEccCCCCeEEEe--------eCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEEeCCCcc
Q psy2166 728 FLY----NGKPIEASHRIRTVH--------AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQT 792 (805)
Q Consensus 728 W~~----~g~~l~~~~~~~~~~--------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~ 792 (805)
|++ +|..+..+....... ......|.|.+++.+|+|.|+|.|.|..|..+.++.|.|...|+.+.
T Consensus 148 W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~ 224 (241)
T 3grw_A 148 WLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEE 224 (241)
T ss_dssp EEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC--------
T ss_pred EEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCCCCc
Confidence 999 888887664432211 11345799999999999999999999999999999999987665543
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-22 Score=188.22 Aligned_cols=176 Identities=16% Similarity=0.239 Sum_probs=127.2
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCC--EEEEEEccCCCCCCEEEEEE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG--IVILDILYCYEENSGVYECR 572 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~ 572 (805)
+|.|...+.+.. +.+|++++|.|.+. +.|.+.+.|+|+|..+....+..+..++. ...
T Consensus 2 ~~~~~~~p~~~~-v~~G~~v~l~C~~~--~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~----------------- 61 (182)
T 1rhf_A 2 GLKLMGAPVKLT-VSQGQPVKLNCSVE--GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGF----------------- 61 (182)
T ss_dssp -----CCCEEEE-EETTCCEEEEEEEE--SCSSCCEEEEETTEECCSSEEEEEEEETTEEEEE-----------------
T ss_pred CCEEEeCCcceE-EeCCCcEEEEEEEe--CCCCCeEEEEECCeecCCCCceEEEecCCCceEE-----------------
Confidence 355555555543 89999999999999 67888999999999886654333222211 112
Q ss_pred EEcCCcceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcc
Q psy2166 573 ATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652 (805)
Q Consensus 573 a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 652 (805)
|.|.+++.+|+|.|+|.|.|..|.
T Consensus 62 --------------------------------------------------------L~i~~~~~~d~G~Y~C~~~~~~~~ 85 (182)
T 1rhf_A 62 --------------------------------------------------------LSLKSVERSDAGRYWCQVEDGGET 85 (182)
T ss_dssp --------------------------------------------------------EEESSCCGGGCEEEEEEESSCTTC
T ss_pred --------------------------------------------------------EEEeecCcccCeEEEEEEEcCCCc
Confidence 566666666666666666666554
Q ss_pred e-EEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCe-EEEEEE
Q psy2166 653 D-VTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLY 730 (805)
Q Consensus 653 ~-~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~-~v~W~~ 730 (805)
. +..+.|.|. .+|.|...+... .+.+|+.+.|.|.+. |.|.| .++|++
T Consensus 86 ~~~~~~~l~V~---------------------------~~p~~~~~~~~~-~~~~g~~~~l~C~~~--g~p~p~~v~W~~ 135 (182)
T 1rhf_A 86 EISQPVWLTVE---------------------------GVPFFTVEPKDL-AVPPNAPFQLSCEAV--GPPEPVTIVWWR 135 (182)
T ss_dssp EECCCEEEEEE---------------------------CSCEEEECCCCE-EECTTCCEEEEEEEE--CSSSCCEEEEEE
T ss_pred EEEEEEEEEEe---------------------------cCCeEEecCcce-EecCCCEEEEEeEec--CCCCCCEEEEEc
Confidence 2 245566665 467777777777 899999999999998 99999 999999
Q ss_pred CCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEE-EEEEEEE
Q psy2166 731 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI-SVNLECV 785 (805)
Q Consensus 731 ~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~-~~~l~V~ 785 (805)
+|..+..... ....|.|.++ +|+|.|+|.|.|.+|.... ++.|.|+
T Consensus 136 ~~~~~~~~~~-------~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~Vk 182 (182)
T 1rhf_A 136 GTTKIGGPAP-------SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHLQ 182 (182)
T ss_dssp TTEECSCSEE-------SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred CCeECCCCCC-------CceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEeC
Confidence 9998865421 3347999998 5899999999999998864 8888773
|
| >2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-21 Score=186.10 Aligned_cols=178 Identities=15% Similarity=0.214 Sum_probs=140.3
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCC--CceEEEecCc-------EEEEEEcccccCC
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG--SRFKTTADFG-------FVTLDLTEVYDRD 135 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~--~~~~~~~~~~-------~~~L~I~~~~~~D 135 (805)
+|.|+..+. +..+.+|+.++|.|.+.. +.|.+.|.|+|||..+... .++.+..... ..+|.|.+++.+|
T Consensus 2 ~~~~~~~p~-~~~v~~G~~v~l~C~~~~-~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d 79 (195)
T 2c5d_C 2 ESPFVGNPG-NITGARGLTGTLRCQLQV-QGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSD 79 (195)
T ss_dssp CCSEEECCC-CEEECTTCCEEEEEEEEE-ESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTT
T ss_pred CCeeccChh-heEEecCCcEEEeccccc-CCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccC
Confidence 577776655 789999999999999982 3677899999999999877 3455544332 4689999999999
Q ss_pred CeEEEEEEEeCCeeEEEE-EEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccc
Q psy2166 136 QGIYTCRAWNLAGETFTS-TTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSN 214 (805)
Q Consensus 136 ~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 214 (805)
+|.|+|.+.|..|..... ..|.|.. +|.+...+... .
T Consensus 80 ~G~Y~C~~~~~~~~~~~~~~~l~V~~-----------------------------------------~p~~~~~~~~~-~ 117 (195)
T 2c5d_C 80 TGQYQCLVFLGHQTFVSQPGYVGLEG-----------------------------------------LPYFLEEPEDR-T 117 (195)
T ss_dssp CEEEEEEEEETTEEEECCCEEEEECC-----------------------------------------SCEEEECCCCE-E
T ss_pred CcEEEEEEEeCCCceecccEEEEEec-----------------------------------------CCeEEcCCCcE-E
Confidence 999999999988765444 6677753 34555444443 4
Q ss_pred cCCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEE-EEEE
Q psy2166 215 LSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE-ISVN 292 (805)
Q Consensus 215 v~~g~~~~l~C~~~~~~~p~~-~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~-~~~~ 292 (805)
+.+|+.+.|.|.+ .+.|.+ .+.|+++|..+...... .....|.|.+++ |+|.|+|.|.|..|... ..+.
T Consensus 118 ~~~g~~~~l~C~~--~g~p~p~~v~W~~~~~~~~~~~~~-----~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~ 188 (195)
T 2c5d_C 118 VAANTPFNLSCQA--QGPPEPVDLLWLQDAVPLATAPGH-----GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTAT 188 (195)
T ss_dssp ECTTCCEEEEEEE--ECSSCCCEEEEEESSCBSSSSTTS-----SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEE
T ss_pred EcCCCEEEEEeEC--CCCCCCCEEEEEECCEeccCCCCc-----CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEE
Confidence 7889999999998 678888 99999999988765442 334679999887 89999999999999885 6777
Q ss_pred EEE
Q psy2166 293 LEC 295 (805)
Q Consensus 293 l~v 295 (805)
|.|
T Consensus 189 l~V 191 (195)
T 2c5d_C 189 ITV 191 (195)
T ss_dssp EEE
T ss_pred EEE
Confidence 776
|
| >2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=186.82 Aligned_cols=181 Identities=20% Similarity=0.337 Sum_probs=136.3
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCC--CCceEEEecCcEEEEEEcccccCCCeEEEEE
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL--GSRFKTTADFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
+|.|...+. ...+.+|+.++|.|.+. +.|.+.+.|+|++..+.. ..++.+..++ +|.|.+++.+|+|.|+|.
T Consensus 2 ~~~~~~~~~-~~~v~~G~~v~l~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~ 75 (189)
T 2v5t_A 2 MLTFREVVS-PQEFKQGEDAEVVCRVS--SSPAPAVSWLYHNEEVTTISDNRFAMLANN---NLQILNINKSDEGIYRCE 75 (189)
T ss_dssp CCEEEECCS-SEEEETTSCEEECCEEE--CSSCCEEEEEC-----CBCCCTTEEECTTS---CEEETTCCGGGCEEEEEE
T ss_pred CceeeccCC-CEEEeCCCcEEEEEEEc--CCCCCEEEEEECCccceeccCCeEEEecCC---CEEEeeCCHhHCcEEEEE
Confidence 567766655 67999999999999998 678889999999988764 4566665554 699999999999999999
Q ss_pred EEeCCeeEE--EEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccccc-ccccCCCc
Q psy2166 143 AWNLAGETF--TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQH-LSNLSEGE 219 (805)
Q Consensus 143 a~n~~g~~~--~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~~v~~g~ 219 (805)
+.+..+... ....+.|..++. +...... ...+.+|+
T Consensus 76 ~~~~~~~~~~~~~~~l~v~~~p~-----------------------------------------~~~~~~~~~~~~~~g~ 114 (189)
T 2v5t_A 76 GRVEARGEIDFRDIIVIVNVPPA-----------------------------------------ISMPQKSFNATAERGE 114 (189)
T ss_dssp EEETTTTEEEEEEEEEEEEEEEE-----------------------------------------EECSCCEEEEETTSCC
T ss_pred EEEcCCCceEEEEEEEEecCCCC-----------------------------------------cccccccccccccCCC
Confidence 999864433 344455544332 2211111 12477899
Q ss_pred eEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEe
Q psy2166 220 IAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 296 (805)
Q Consensus 220 ~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~ 296 (805)
.+.|.|.+ .+.|.+.+.|+++|..+....++.... ....|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 115 ~v~l~C~~--~g~p~~~v~W~~~g~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 187 (189)
T 2v5t_A 115 EMTFSCRA--SGSPEPAISWFRNGKLIEENEKYILKG--SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187 (189)
T ss_dssp CEEEECEE--EEESCCEEEEEETTEECCCSSSEEEET--TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred cEEEEEEE--ccCCCCeEEEEECCEECcCCCcEEEec--CCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence 99999998 567888999999999998777665433 23479999999999999999999999999888888875
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-22 Score=197.71 Aligned_cols=197 Identities=19% Similarity=0.276 Sum_probs=133.3
Q ss_pred CCCCceEecCC---CcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEE-EeeCCEEEEEEccCCCCCCEE
Q psy2166 493 AEAPKFITQIS---DVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT-FHDFGIVILDILYCYEENSGV 568 (805)
Q Consensus 493 ~~~P~~~~~~~---~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~ 568 (805)
..+|.|...+. ....+.+|++++|.|.+. +.|.+.++|+|+|..+....++.. ....+...|.|.+++.+|+|.
T Consensus 13 ~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 90 (231)
T 3ojm_B 13 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 90 (231)
T ss_dssp CEEEEESCGGGGCCSCEEEETTSCEEEECCEE--EESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEE
T ss_pred ccCCccccccccCceeEEEccCCCEEEEEecc--cCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEE
Confidence 45677765541 334489999999999999 568889999999999865433210 111112246666666666666
Q ss_pred EEEEEEcCCcceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEe
Q psy2166 569 YECRATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATN 648 (805)
Q Consensus 569 Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 648 (805)
|+|.|.|..|.....+.|.|...+.
T Consensus 91 Y~C~~~n~~~~~~~~~~l~V~~~~~------------------------------------------------------- 115 (231)
T 3ojm_B 91 YTCVVENEYGSINHTYHLDVVERSR------------------------------------------------------- 115 (231)
T ss_dssp EEEEEEETTEEEEEEEEEEEECCCC-------------------------------------------------------
T ss_pred EEEEEecccCcccccEEEEEEcCCC-------------------------------------------------------
Confidence 6666666655554444444432111
Q ss_pred CCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeee-cCCcccccCCCCeEEEEEEEeecCCCCeEEE
Q psy2166 649 KYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTS-EFQHLSNLSEGEIAHFEASLIPVGDQTMTVE 727 (805)
Q Consensus 649 ~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~-~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~ 727 (805)
.+|.+.. .+... .+.+|+.+.|.|.+. |.|.+.+.
T Consensus 116 -----------------------------------------~~p~~~~~~~~~~-~~~~g~~~~l~C~~~--~~p~p~v~ 151 (231)
T 3ojm_B 116 -----------------------------------------HRPILQAGLPANA-STVVGGDVEFVCKVY--SDAQPHIQ 151 (231)
T ss_dssp -----------------------------------------CCCEECTTCSCCE-EEETTCCEEEECCEE--CSSCCEEE
T ss_pred -----------------------------------------CCCceeeccCCce-EEEeCCcEEEEEEEe--cCCCCEEE
Confidence 1222222 23334 788999999999999 99999999
Q ss_pred EEE----CCEEccCCCCeEE--EeeC-----cEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEEeCCC
Q psy2166 728 FLY----NGKPIEASHRIRT--VHAF-----GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPS 790 (805)
Q Consensus 728 W~~----~g~~l~~~~~~~~--~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 790 (805)
|++ +|..+..+..... .... ....|.|.++..+|+|.|+|.|.|..|..+.++.|.|...|.+
T Consensus 152 W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~ 225 (231)
T 3ojm_B 152 WIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQA 225 (231)
T ss_dssp EEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC--
T ss_pred EEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCCC
Confidence 999 8887765543221 1111 1236999999999999999999999999999999999765443
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.5e-22 Score=194.66 Aligned_cols=188 Identities=27% Similarity=0.402 Sum_probs=137.5
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc--eEEEeeCCEEEEEEccCCCCCCEEEE
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR--YRTFHDFGIVILDILYCYEENSGVYE 570 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~ 570 (805)
..+|.|...+.... +.+|+.++|.|.+. +.|.+.|.|+|+|..+..... ..+...++
T Consensus 7 ~~~P~i~~~p~~~~-v~~G~~v~L~C~~~--g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~------------------ 65 (217)
T 2vr9_A 7 YQSPRIIEHPTDLV-VKKNEPATLNCKVE--GKPEPTIEWFKDGEPVSTNEKKSHRVQFKDG------------------ 65 (217)
T ss_dssp CCCCEEEECCCCEE-ECTTSCEEECCEEE--CSSCCEEEEEETTEECCCSSSSSSEEECTTS------------------
T ss_pred cCCCEEecCCCceE-EeCCCcEEEEEEcC--CCCCCeEEEEECCcCccCCCccceeEEecCC------------------
Confidence 57888888876654 89999999999998 778889999999988754311 00000000
Q ss_pred EEEEcCCcceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCC
Q psy2166 571 CRATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKY 650 (805)
Q Consensus 571 C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 650 (805)
.. ...|.|.+++.+|+|.|+|.|.|..
T Consensus 66 ----------------------------------------------~~-------~~~l~i~~v~~~d~G~Y~C~~~n~~ 92 (217)
T 2vr9_A 66 ----------------------------------------------AL-------FFYRTMQGKKEQDGGEYWCVAKNRV 92 (217)
T ss_dssp ----------------------------------------------CE-------EESSCCBSSSCBCCEEEEEEEEETT
T ss_pred ----------------------------------------------ce-------EEEEEeccCCcccCceEEEEEecCC
Confidence 00 0114566777888888888888877
Q ss_pred cceE-EEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEE-eecCCCCeEEEE
Q psy2166 651 GSDV-TKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASL-IPVGDQTMTVEF 728 (805)
Q Consensus 651 g~~~-~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~-~~~g~p~~~v~W 728 (805)
|... ..+.|.|.. .+|.+...+... .+.+|+.+.|.|.+ . |.|.|.|+|
T Consensus 93 g~~~~~~~~l~v~~--------------------------~~~~~~~~~~~~-~~~~g~~v~l~C~~~~--g~p~~~v~W 143 (217)
T 2vr9_A 93 GQAVSRHASLQIAV--------------------------LRDDFRVEPKDT-RVAKGETALLECGPPK--GIPEPTLIW 143 (217)
T ss_dssp EEEECCCEEEEECE--------------------------ECCSCSBCCCCE-EECTTSCEEECCBCCC--EESCCEEEE
T ss_pred CccccccceEEEEE--------------------------eCCCcEECCCcc-EEcCCCeEEEEEECCC--CCCCCeEEE
Confidence 7653 355666654 234455555566 88999999999998 6 889999999
Q ss_pred EECCEEccC--------CCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 729 LYNGKPIEA--------SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 729 ~~~g~~l~~--------~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
+|+|..+.. ..++.+. ..+ .|.|.+++.+|+|.|+|.|.|.+|....++.+.|..
T Consensus 144 ~~~g~~~~~~~~~~~~~~~~~~~~-~~~--~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~ 206 (217)
T 2vr9_A 144 IKDGVPLDDLKAMSFGASSRVRIV-DGG--NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206 (217)
T ss_dssp EETTEEECCCCCC---CCCSEEEE-TTT--EEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred EECCcCCCcccccccccCCcEEec-CCC--cEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEE
Confidence 999999873 3344332 233 699999999999999999999999988887776654
|
| >2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-22 Score=190.09 Aligned_cols=183 Identities=22% Similarity=0.335 Sum_probs=141.3
Q ss_pred CCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccC-CCceEEEEeCcEEEEEEcccCcCCceEEEEEE
Q psy2166 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFH-KNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRA 381 (805)
Q Consensus 303 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~-~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a 381 (805)
+|.+...+... .+.+|+.++|.|.+. +.|.+.+.|++++..+.. ..++.+..++. .|.|.++..+|+|.|+|.+
T Consensus 7 ~P~i~~~~~~~-~~~~G~~v~l~C~~~--~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~~ 81 (192)
T 2iep_A 7 APVITTPLETV-DALVEEVATFMCAVE--SYPQPEISWTRNKILIKLFDTRYSIRENGQ--LLTILSVEDSDDGIYCCTA 81 (192)
T ss_dssp EEEESSCCCEE-EEETTSCEEEECCEE--EESCCEEEEEETTEECCTTCTTEEEEGGGT--EEEESSCCGGGCEEEEEEE
T ss_pred CceeecCccce-eeeCCCcEEEEeeCC--CCCCCeEEEEECCEEccccCccEEEcCCcc--EEEEcCCCcccCeEEEEEE
Confidence 45554444433 388999999999997 678889999999999875 44555554444 6999999999999999999
Q ss_pred EeCcee-eEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEE
Q psy2166 382 WNKYGE-DFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEAR 460 (805)
Q Consensus 382 ~n~~g~-~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (805)
.|..|. ......+.|..
T Consensus 82 ~~~~~~~~~~~~~l~v~~-------------------------------------------------------------- 99 (192)
T 2iep_A 82 NNGVGGAVESCGALQVKM-------------------------------------------------------------- 99 (192)
T ss_dssp ECSSSCCEEEEEEEEEEE--------------------------------------------------------------
T ss_pred EcCCCceeEeEEEEEEEe--------------------------------------------------------------
Confidence 998877 34556666643
Q ss_pred EeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEcc
Q psy2166 461 LTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLP 540 (805)
Q Consensus 461 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~ 540 (805)
+|.+...+... .+.+|+.++|.|.+. |.|.+.++|+++|..+.
T Consensus 100 ----------------------------------~p~~~~~~~~~-~~~~g~~~~l~C~~~--g~p~~~v~W~~~~~~~~ 142 (192)
T 2iep_A 100 ----------------------------------KPKITRPPINV-KIIEGLKAVLPCTTM--GNPKPSVSWIKGDSALR 142 (192)
T ss_dssp ----------------------------------EEEEEECCCCE-EEETTSCEEECCEEE--EESCCEEEEEETTEECC
T ss_pred ----------------------------------CCccccCCcce-EEeCCCcEEEEEEEe--ccCCceEEEEeCCEEcc
Confidence 23344333333 378999999999998 66888999999999998
Q ss_pred CCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcce-EEEEEEEEeeee
Q psy2166 541 HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD-VTKASLKCVSKT 592 (805)
Q Consensus 541 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~ 592 (805)
.+.++.+..++ .|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..+|
T Consensus 143 ~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp 192 (192)
T 2iep_A 143 ENSRIAVLESG---SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA 192 (192)
T ss_dssp CCSSEEECTTS---CEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred CCCcEEEecCC---cEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence 87777655444 49999999999999999999999988 456888887654
|
| >1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A | Back alignment and structure |
|---|
Probab=99.87 E-value=9.4e-21 Score=181.10 Aligned_cols=181 Identities=18% Similarity=0.322 Sum_probs=139.0
Q ss_pred CeEEecCCCcccccCCCeEEEEEEEeecCCC-CcEEEEEE-CCEEcc-CCCceEEEEe-CcEEEEEEcccCcCCceEEEE
Q psy2166 304 PKFTSHIKSLEGLKDGDSAHFECTLTPVNDP-ELKVEWFH-NGKPIF-HKNRVKMVSD-FGFVVMDIAYVQSHDSGEYVC 379 (805)
Q Consensus 304 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p-~~~v~W~~-~g~~l~-~~~~~~~~~~-~~~~~l~i~~v~~~d~G~Y~C 379 (805)
+.+...+.+.. +.+|+.++|.|.+. +.+ .+.+.|++ +|..+. ...++.+... .....|.|.++..+|+|.|+|
T Consensus 3 ~~v~~~p~~~~-v~~G~~v~l~C~~~--~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 79 (191)
T 1epf_A 3 LQVDIVPSQGE-ISVGESKFFLCQVA--GDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKC 79 (191)
T ss_dssp CCEEEESSSEE-EETTCCEEEEEEEC--CCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred eEEEecCCCcE-EcCCCCEEEEEECC--CCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEE
Confidence 34444455544 88999999999997 555 78999999 888876 4456655443 566789999999999999999
Q ss_pred EEEeCc-eeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEE
Q psy2166 380 RAWNKY-GEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE 458 (805)
Q Consensus 380 ~a~n~~-g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (805)
.+.|.. +.....+.|.|.
T Consensus 80 ~~~~~~~~~~~~~~~l~v~------------------------------------------------------------- 98 (191)
T 1epf_A 80 VVTAEDGTQSEATVNVKIF------------------------------------------------------------- 98 (191)
T ss_dssp EEEETTTEEEEEEEEEEEE-------------------------------------------------------------
T ss_pred EEEcCCCcceEEEEEEEee-------------------------------------------------------------
Confidence 999998 555555666653
Q ss_pred EEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEE
Q psy2166 459 ARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKK 538 (805)
Q Consensus 459 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~ 538 (805)
.+|.+...+.... +.+|+.++|.|.+. |.|.+.++|+++|..
T Consensus 99 -----------------------------------~~p~~~~~~~~~~-~~~g~~~~l~C~~~--g~p~~~v~W~~~~~~ 140 (191)
T 1epf_A 99 -----------------------------------QKLMFKNAPTPQE-FKEGEDAVIVCDVV--SSLPPTIIWKHKGRD 140 (191)
T ss_dssp -----------------------------------CCSEEEECCSSEE-CCTTSCEEECCEEE--CSSCCEEEEEETTEE
T ss_pred -----------------------------------cCceEecCCCcEe-ecCCCeEEEEEEEC--CCCCCEEEEEECCEE
Confidence 3455555444443 88999999999999 788999999999999
Q ss_pred ccC--CCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEe
Q psy2166 539 LPH--GHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 539 l~~--~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
+.. +.++....++ .|.|.++..+|+|.|+|.|.|..|.......+.|.
T Consensus 141 ~~~~~~~~~~~~~~~---~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v~ 190 (191)
T 1epf_A 141 VILKKDVRFIVLSNN---YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190 (191)
T ss_dssp GGGGCCTTEEECTTS---CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEE
T ss_pred eeccCCceEEEecCC---eEEECCCChhhCEEEEEEEEEecceeEEEEEEEEe
Confidence 863 3355444333 49999999999999999999999877766666654
|
| >3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-21 Score=192.77 Aligned_cols=192 Identities=22% Similarity=0.303 Sum_probs=145.0
Q ss_pred CCCeEEecC---CCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCce---EEEecCcEEEEEEcccccCCCe
Q psy2166 64 AKPVFIVPL---KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRF---KTTADFGFVTLDLTEVYDRDQG 137 (805)
Q Consensus 64 ~~p~~~~~~---~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~---~~~~~~~~~~L~I~~~~~~D~G 137 (805)
.+|.|+.+. +..+.+.+|+.++|.|.+. +.|.+.|.|+|+|..+....++ .... ...+|.|.+++.+|+|
T Consensus 10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~L~i~~v~~~d~G 85 (241)
T 3grw_A 10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAA--GNPTPSISWLKNGREFRGEHRIGGIKLRH--QQWSLVMESVVPSDRG 85 (241)
T ss_dssp -CCEESSGGGGSCCEEEEETTSEEEEECCEE--CSSCCEEEEEETTEECCGGGSTTCCEEEG--GGTEEEECSCCGGGCE
T ss_pred CCceeEcCCCCCCcceEEcCCCeEEEEEEec--CCCCceeEEEECCcccCCCCcccceeeec--cceEEEEEeCCcccCE
Confidence 467776553 3457899999999999998 6788899999999998765432 2322 2337999999999999
Q ss_pred EEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCC
Q psy2166 138 IYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 217 (805)
Q Consensus 138 ~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~ 217 (805)
.|+|.+.|..|.......|.|..... .+|.+.........+.+
T Consensus 86 ~Y~C~~~~~~~~~~~~~~l~V~~~~~-------------------------------------~~~~~~~~~~~~~~~~~ 128 (241)
T 3grw_A 86 NYTCVVENKFGSIRQTYTLDVLERSP-------------------------------------HRPILQAGLPANQTAVL 128 (241)
T ss_dssp EEEEEEEETTEEEEEEEEEEEECCCC-------------------------------------CCCEEEECTTCSEECCT
T ss_pred EEEEEEeecCCceEEEEEEEEeccCC-------------------------------------CCceeecCCCccceecC
Confidence 99999999999888888888865321 22444433333335789
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEE----CCEEccCCCcEEE-EE-------EcCeEEEEEcCCCCcccEEEEEEEEcCCe
Q psy2166 218 GEIAHFEASLIPVGDQTMTVEFLY----NGKPIEASHRIRT-VH-------AFGMVVLEILGTKIEDTGVYTCRATNKWG 285 (805)
Q Consensus 218 g~~~~l~C~~~~~~~p~~~i~W~k----~g~~l~~~~~~~~-~~-------~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 285 (805)
|+.+.|.|.+ .+.|.+.+.|++ +|..+........ .. ......|.|.+++.+|+|.|+|.|.|..|
T Consensus 129 g~~v~L~C~~--~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g 206 (241)
T 3grw_A 129 GSDVEFHCKV--YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIG 206 (241)
T ss_dssp TCCEEEEEEE--ECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred CCEEEEEEEE--ecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcc
Confidence 9999999998 678889999999 8887765432211 11 11356899999999999999999999999
Q ss_pred eEEEEEEEEEecc
Q psy2166 286 QAEISVNLECVDK 298 (805)
Q Consensus 286 ~~~~~~~l~v~~~ 298 (805)
..+.++.|.|...
T Consensus 207 ~~~~~~~l~V~~~ 219 (241)
T 3grw_A 207 VAEKAFWLSVHGP 219 (241)
T ss_dssp EEEEEEEEEC---
T ss_pred eEEEEEEEEecCC
Confidence 9999999988753
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.2e-22 Score=192.43 Aligned_cols=193 Identities=22% Similarity=0.323 Sum_probs=137.9
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEE
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECR 572 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 572 (805)
..+|.|...+.+.. +.+|++++|.|.+. +.|.+.++|+++|..+...... .....
T Consensus 7 ~~pp~i~~~p~~~~-v~~G~~v~l~C~~~--~~p~~~v~W~~~~~~~~~~~~~--------------------~~~~~-- 61 (212)
T 2v9r_A 7 DFPPRIVEHPSDLI-VSKGEPATLNCKAE--GRPTPTIEWYKGGERVETDKDD--------------------PRSHR-- 61 (212)
T ss_dssp CEEEEEEECCCCEE-ECTTCCEEECCEEE--EESCCEEEEEETTEECCCTTTC--------------------TTCSE--
T ss_pred cCCcceecCCCceE-EeCCCcEEEEEEcC--CCCCCEEEEEECCEEeeccccc--------------------cccce--
Confidence 46788887776654 89999999999998 6688899999999877543200 00000
Q ss_pred EEcCCcceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcc
Q psy2166 573 ATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652 (805)
Q Consensus 573 a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 652 (805)
....+....+ ..|.|.++..+|+|.|+|.|.|..|.
T Consensus 62 --------------------------------------~~~~~~~~~~------~~l~i~~~~~~d~G~Y~C~~~n~~g~ 97 (212)
T 2v9r_A 62 --------------------------------------MLLPSGSLFF------LRIVHGRKSRPDEGVYVCVARNYLGE 97 (212)
T ss_dssp --------------------------------------EECTTSCEEE------SSCCCCSSCCCSCEEEEEEEEETTEE
T ss_pred --------------------------------------EEecCCcEEE------EEEEecCCCcccCeEEEEEEECCCCc
Confidence 0000000000 01556677888888888888888776
Q ss_pred e-EEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEE-eecCCCCeEEEEEE
Q psy2166 653 D-VTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASL-IPVGDQTMTVEFLY 730 (805)
Q Consensus 653 ~-~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~-~~~g~p~~~v~W~~ 730 (805)
. ...+.|.|.. .+|.+...+.+. .+.+|+.+.|.|.+ . |.|.+.++|+|
T Consensus 98 ~~~~~~~l~V~~--------------------------~~~~~~~~~~~~-~~~~g~~~~l~C~~~~--~~p~~~v~W~~ 148 (212)
T 2v9r_A 98 AVSHDASLEVAI--------------------------LRDDFRQNPSDV-MVAVGEPAVMECQPPR--GHPEPTISWKK 148 (212)
T ss_dssp EECCCEEEEECE--------------------------ECSSCSBCCCCE-EEETTSCEEEECBCCC--EESCCEEEEEE
T ss_pred eeecceEEEEEe--------------------------ccccceeCCCce-EecCCCcEEEEEecCC--CCCCCEEEEEE
Confidence 5 3456677664 234444555566 88999999999998 6 88999999999
Q ss_pred CCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEE-EEEEEEE
Q psy2166 731 NGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS-VNLECVV 786 (805)
Q Consensus 731 ~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~-~~l~V~~ 786 (805)
+|..+......... .++ .|.|.++..+|+|.|+|.|.|.+|..... +.|.|..
T Consensus 149 ~~~~l~~~~~~~~~-~~~--~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~ 202 (212)
T 2v9r_A 149 DGSPLDDKDERITI-RGG--KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLE 202 (212)
T ss_dssp TTEEECTTSTTEEE-ETT--EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred CCccCCCCcceEEc-cCC--eEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEe
Confidence 99998876543323 334 69999999999999999999999987654 7888864
|
| >1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.87 E-value=5.9e-21 Score=180.93 Aligned_cols=175 Identities=18% Similarity=0.253 Sum_probs=134.2
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCc--EEEEEEcccccCCCeEEEEE
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG--FVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~ 142 (805)
+|.|...+. ++.+.+|+.++|.|.+. +.|.+.|.|+|++..+....++.+..++. ..+|.|.+++.+|+|.|+|.
T Consensus 2 ~~~~~~~p~-~~~v~~G~~v~l~C~~~--~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 78 (182)
T 1rhf_A 2 GLKLMGAPV-KLTVSQGQPVKLNCSVE--GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQ 78 (182)
T ss_dssp -----CCCE-EEEEETTCCEEEEEEEE--SCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEE
T ss_pred CCEEEeCCc-ceEEeCCCcEEEEEEEe--CCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEE
Confidence 345554443 68899999999999999 68888999999999998877666555432 46899999999999999999
Q ss_pred EEeCCeeE-EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceE
Q psy2166 143 AWNLAGET-FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIA 221 (805)
Q Consensus 143 a~n~~g~~-~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~ 221 (805)
+.|..|.. .....|.|.. +|.+...+... .+.+|+.+
T Consensus 79 ~~~~~~~~~~~~~~l~V~~-----------------------------------------~p~~~~~~~~~-~~~~g~~~ 116 (182)
T 1rhf_A 79 VEDGGETEISQPVWLTVEG-----------------------------------------VPFFTVEPKDL-AVPPNAPF 116 (182)
T ss_dssp ESSCTTCEECCCEEEEEEC-----------------------------------------SCEEEECCCCE-EECTTCCE
T ss_pred EEcCCCcEEEEEEEEEEec-----------------------------------------CCeEEecCcce-EecCCCEE
Confidence 99986643 3466777753 34444444443 47899999
Q ss_pred EEEEEEeeCCCCCe-EEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEE-EEEEEEE
Q psy2166 222 HFEASLIPVGDQTM-TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE-ISVNLEC 295 (805)
Q Consensus 222 ~l~C~~~~~~~p~~-~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~-~~~~l~v 295 (805)
.|.|.+ .+.|.+ .+.|+++|..+..... ....|.|.++ +|+|.|+|.|.|..|... ..+.|.|
T Consensus 117 ~l~C~~--~g~p~p~~v~W~~~~~~~~~~~~-------~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V 181 (182)
T 1rhf_A 117 QLSCEA--VGPPEPVTIVWWRGTTKIGGPAP-------SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL 181 (182)
T ss_dssp EEEEEE--ECSSSCCEEEEEETTEECSCSEE-------SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred EEEeEe--cCCCCCCEEEEEcCCeECCCCCC-------CceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence 999998 688888 9999999998865422 3468999988 589999999999999875 3666654
|
| >2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=196.24 Aligned_cols=208 Identities=17% Similarity=0.229 Sum_probs=125.8
Q ss_pred CCCcccEEEEEEEEcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCC-----CcEEEEEE
Q psy2166 268 TKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDP-----ELKVEWFH 342 (805)
Q Consensus 268 ~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p-----~~~v~W~~ 342 (805)
++.+|+|.|+|.|. |.......+.+. .++.+...+... .+.+|+.++|.|.+. +.+ .+.|.|+|
T Consensus 11 v~~~dsg~Y~C~a~---g~~~~~~~~~~~-----~~~~~~~~p~~~-~v~~G~~v~L~C~~~--~~~~~~~~~~~v~W~k 79 (254)
T 2c1o_A 11 VRPGTSVKLSCKAS---GYSFTNYWMNWL-----RELVMTQSPLTL-SVTIGQPASISCKSS--QSLLYSNGKTYLNWLL 79 (254)
T ss_dssp -----------------------------------CCCEEEECSEE-EECTTSCEEEEEEES--SCCBCSSSCBCEEEEE
T ss_pred ecCCccEEEEEcCc---hhhhhhhhhhee-----eceeEEeCCceE-EecCCCcEEEEeecc--CcccccCCCCceEEEE
Confidence 68899999999998 333333333332 245555444444 388999999999997 666 48999998
Q ss_pred C--CEEc------------cCCCceEEEEeCcEEEEEEcccCcCCceEEEEEEEeCceeeEE-EEEEEEEecccccccCC
Q psy2166 343 N--GKPI------------FHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFT-RATIKCFGKGGVYLDSL 407 (805)
Q Consensus 343 ~--g~~l------------~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~ 407 (805)
+ |..+ ....++.+...+....|.|.+++.+|+|.|+|.|.|..+.... ...+.|..
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~--------- 150 (254)
T 2c1o_A 80 QRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKR--------- 150 (254)
T ss_dssp ECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECC---------
T ss_pred eCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECC---------
Confidence 4 3322 1135677766777788999999999999999999987654322 23454421
Q ss_pred ChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCccc
Q psy2166 408 QPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVA 487 (805)
Q Consensus 408 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 487 (805)
T Consensus 151 -------------------------------------------------------------------------------- 150 (254)
T 2c1o_A 151 -------------------------------------------------------------------------------- 150 (254)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCC--ceEEEe--eC---CEEEEEEcc
Q psy2166 488 QAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGH--RYRTFH--DF---GIVILDILY 560 (805)
Q Consensus 488 ~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~--~~~~~~--~~---~~~~L~i~~ 560 (805)
...+|.+....+... ...|+.++|.|.+.+...+.+.|+|+|||.++..+. +..... ++ ..+.|.|.+
T Consensus 151 ----~~~~P~v~~~~~~~~-~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~ 225 (254)
T 2c1o_A 151 ----ADAAPTVSIFPPSSE-QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTK 225 (254)
T ss_dssp ----CCBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEH
T ss_pred ----CCCCCeeEeecCChh-hccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEecc
Confidence 124566766554443 346789999999985333346899999999886651 111111 11 135799999
Q ss_pred CCCCCCEEEEEEEEcCCcce
Q psy2166 561 CYEENSGVYECRATNKYGSD 580 (805)
Q Consensus 561 v~~~d~G~Y~C~a~n~~g~~ 580 (805)
+..+|+|.|+|.|.|.....
T Consensus 226 ~~~~d~G~Y~C~a~n~~~~~ 245 (254)
T 2c1o_A 226 DEYERHNSYTCEATHKTSTS 245 (254)
T ss_dssp HHHHTCCEEEEEEECTTCSS
T ss_pred ccccCCCeEEEEEEcCCCCC
Confidence 99999999999999987664
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=189.16 Aligned_cols=131 Identities=17% Similarity=0.148 Sum_probs=99.5
Q ss_pred EEEeccCCCCCcEEEEEEEEeCCc--ceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccC
Q psy2166 628 ILDILYCYEENSGVYECRATNKYG--SDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLS 705 (805)
Q Consensus 628 ~L~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~ 705 (805)
.|.|.+++.+|+|.|+|.|.|..| .....+.|.|..+ |.+...+... .+.
T Consensus 66 ~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~---------------------------p~~~~~~~~~-~~~ 117 (212)
T 1f97_A 66 GITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVP---------------------------PSKPTISVPS-SVT 117 (212)
T ss_dssp EEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEEBC---------------------------CCCCEEECCS-EEE
T ss_pred eEEEcccCcccCeEEEEEEEccCCCcccEEEEEEEEEcC---------------------------CCCcccCCcc-ccC
Confidence 499999999999999999999987 5566778888753 3333334445 789
Q ss_pred CCCeEEEEEE-EeecCCCCeEEEEEECCE-EccCCCCe-------EEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccE
Q psy2166 706 EGEIAHFEAS-LIPVGDQTMTVEFLYNGK-PIEASHRI-------RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 776 (805)
Q Consensus 706 ~G~~~~l~C~-~~~~g~p~~~v~W~~~g~-~l~~~~~~-------~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 776 (805)
+|+.+.|.|. +. |.|.|.+.|+|+|. .+...... ..........|.|.++..+|+|.|+|.|.|.+|..
T Consensus 118 ~g~~~~l~C~~~~--~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 195 (212)
T 1f97_A 118 IGNRAVLTCSEHD--GSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTA 195 (212)
T ss_dssp TTSCEEEEEECSC--CBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCC
T ss_pred CCCeEEEEEEccc--CcCCCEEEEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCc
Confidence 9999999999 56 99999999999999 88765431 11222223479999999999999999999999998
Q ss_pred EEEEEEEEEEeC
Q psy2166 777 EISVNLECVVWS 788 (805)
Q Consensus 777 ~~~~~l~V~~~~ 788 (805)
..+..+.|.+.+
T Consensus 196 ~~s~~~~l~V~~ 207 (212)
T 1f97_A 196 MRSEAAHMDAVE 207 (212)
T ss_dssp EECCCEEEEEES
T ss_pred cccceEEEEEEE
Confidence 666666655543
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=178.62 Aligned_cols=119 Identities=18% Similarity=0.261 Sum_probs=93.6
Q ss_pred CCCCcEEEEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEE
Q psy2166 635 YEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEA 714 (805)
Q Consensus 635 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C 714 (805)
..+|+|.|+|.|.|. ....+.|.|. .+|.+...+... .+.+|+.+.|.|
T Consensus 57 ~~~d~G~Y~C~~~n~---~~~~~~l~V~---------------------------~~P~~~~~~~~~-~~~~g~~~~l~C 105 (184)
T 3b5h_A 57 SDDQWGEYSCVFLPE---PMGTANIQLH---------------------------GPPRVKAVKSSE-HINEGETAMLVC 105 (184)
T ss_dssp GGGCCEEEEEEEEST---TSCEEEEEEC---------------------------CSCCCEESCSEE-EECTTSCEEEEE
T ss_pred chhhCeEEEEEEECC---cCcEEEEEEe---------------------------cCCceeecCCCc-EEcCCCcEEEEE
Confidence 466777777777762 2245566665 356666666666 789999999999
Q ss_pred EEeecCCC-CeEEEEEE---CC-EEccC--CCCeEEEeeCcEEEEEEcCCC-CCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 715 SLIPVGDQ-TMTVEFLY---NG-KPIEA--SHRIRTVHAFGMVVLEILGTK-IEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 715 ~~~~~g~p-~~~v~W~~---~g-~~l~~--~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
.+. |.| .+.|.|+| ++ ..+.. ..++.+..+++...|.|.+++ .+|+|.|+|.|.|.+|....++.|.|..
T Consensus 106 ~~~--g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 183 (184)
T 3b5h_A 106 KSE--SVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183 (184)
T ss_dssp ECC--CSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred EEC--CCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEec
Confidence 998 999 79999999 44 44543 267888888888899999999 9999999999999999999999998864
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.4e-21 Score=185.55 Aligned_cols=185 Identities=17% Similarity=0.263 Sum_probs=141.5
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEE
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECR 572 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 572 (805)
...++|...+.... +.+|++++|.|.+. +.|.+.+.|+|+|..+..+.. ..|.|.+++.+|+|.|+|.
T Consensus 16 ~~~~~i~~~p~~~~-v~~G~~v~L~C~~~--~~p~~~v~W~~~~~~~~~~~~---------~~L~i~~v~~~d~G~Y~C~ 83 (218)
T 3k0w_A 16 PRGSKITVNPESKA-VLAGQFVKLCCRAT--GHPFVQYQWFKMNKEIPNGNT---------SELIFNAVHVKDAGFYVCR 83 (218)
T ss_dssp ---CCEEECCCCEE-EETTSBEEEECEET--TTTSSEEEEEETTEECTTCCS---------SEEEETTCCGGGCEEEEEE
T ss_pred CCCCEEEECCCCeE-EeCCCcEEEEeeec--CCCCCEEEEEECCEECCCCCC---------CEEEEccCChhhCeEeEEE
Confidence 46788888777765 89999999999998 788899999999999866531 2599999999999999999
Q ss_pred EEcCCcce-EEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCc
Q psy2166 573 ATNKYGSD-VTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG 651 (805)
Q Consensus 573 a~n~~g~~-~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g 651 (805)
|.|..|.. +..+.|.|...+..... .-. +
T Consensus 84 ~~n~~~~~~s~~~~l~V~~~~~~~~~---------------------------------------~~~-----------~ 113 (218)
T 3k0w_A 84 VNNNFTFEFSQWSQLDVCDIPESFQR---------------------------------------SVD-----------G 113 (218)
T ss_dssp EECTTCCEECCCEEEEEECCCGGGCT---------------------------------------TCC-----------S
T ss_pred EEcCCCCceeeEEEEEEEccCccccc---------------------------------------ccc-----------c
Confidence 99987754 34455555543320000 000 0
Q ss_pred ceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEEC
Q psy2166 652 SDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN 731 (805)
Q Consensus 652 ~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~ 731 (805)
+ ...+|.+...+... .+.+|+.+.|.|.+. |.|.+.++|+++
T Consensus 114 ---------~--------------------------~~~~p~~~~~~~~~-~v~~G~~v~L~C~~~--g~p~~~v~W~~~ 155 (218)
T 3k0w_A 114 ---------V--------------------------SESKLQICVEPTSQ-KLMPGSTLVLQCVAV--GSPIPHYQWFKN 155 (218)
T ss_dssp ---------B--------------------------CCSSCEEEECCCCE-EECTTCCEEEECEEE--BSSCCEEEEEET
T ss_pred ---------c--------------------------cCCCceEEECCCce-eecCCCcEEEEEEec--ccCCCeEEEEEC
Confidence 0 01356777777777 899999999999998 999999999999
Q ss_pred CEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCcc-EEEEEEEEEEE
Q psy2166 732 GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ-AEISVNLECVV 786 (805)
Q Consensus 732 g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~-~~~~~~l~V~~ 786 (805)
|..+....+ ..|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..
T Consensus 156 ~~~~~~~~~---------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~ 202 (218)
T 3k0w_A 156 ELPLTHETK---------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 202 (218)
T ss_dssp TEECTTCCS---------SEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC
T ss_pred CEECCCCCC---------CEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeC
Confidence 999876543 16999999999999999999999996 66666777754
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.4e-21 Score=184.20 Aligned_cols=183 Identities=15% Similarity=0.139 Sum_probs=114.4
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcE-EEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEE
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLV-VEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECR 572 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~-v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 572 (805)
.+|.+...+.... +.+|++++|.|.+. +.|.+. ++|+|||..+.... ..|.|.+++.+|+|.|+|.
T Consensus 6 p~p~i~~~p~~~~-v~~G~~v~L~C~~~--~~p~~~~v~W~k~g~~l~~~~----------~~L~i~~v~~~D~G~Y~C~ 72 (204)
T 3sgj_C 6 PKAVVFLEPQWYR-VLEKDSVTLKCQGA--YSPEDQSTQWFHNESLISSQA----------SSYFIDAATVDDSGEYRCQ 72 (204)
T ss_dssp CBCEEEEESCCSE-EETTCCEEEEEECC--SSSSCCCEEEEETTEEESCCS----------SEEEESSCCGGGCEEEEEE
T ss_pred CCCeEEEcCCCeE-EECCCCEEEEEcCC--CCCCCcEEEEEECCEEcccCc----------cEEEEecccccCCEEEEEE
Confidence 4566666666543 89999999999998 556554 99999998775432 1355555555555555555
Q ss_pred EEcCCcceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcc
Q psy2166 573 ATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652 (805)
Q Consensus 573 a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 652 (805)
| .|. .
T Consensus 73 a-------------------------------------------------------------------------~n~--~ 77 (204)
T 3sgj_C 73 T-------------------------------------------------------------------------QLS--T 77 (204)
T ss_dssp E-------------------------------------------------------------------------TTS--B
T ss_pred e-------------------------------------------------------------------------CCC--c
Confidence 5 331 1
Q ss_pred eEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECC
Q psy2166 653 DVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG 732 (805)
Q Consensus 653 ~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g 732 (805)
.+..+.|.|.. +|.+...+. . .+.+|+.++|.|.+. .+.|.+.|.|+|||
T Consensus 78 ~s~~~~l~V~~---------------------------~p~~~~~~~-~-~v~~G~~v~L~C~~~-~~~p~~~v~W~k~g 127 (204)
T 3sgj_C 78 LSDPVQLEVHI---------------------------GWLLLQAPR-W-VFKEEDPIHLRCHSW-KNTALHKVTYLQNG 127 (204)
T ss_dssp CCCCEEEEEEC---------------------------SSEEEECSC-S-EEETTCCEEEEEEEG-GGCCCEEEEEEETT
T ss_pred ccccEEEEEec---------------------------CceEecCCc-e-eEeCCCcEEEEEEec-CCCCCceEEEEECC
Confidence 22233444442 233322222 3 688999999999996 14467899999999
Q ss_pred EEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEc-CCccEEEEEEEEEEEeCCCc--ceEEEeecccC
Q psy2166 733 KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN-KWGQAEISVNLECVVWSPSQ--TKLVYSLFEVP 802 (805)
Q Consensus 733 ~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N-~~G~~~~~~~l~V~~~~~~~--~~~~~~~~~~~ 802 (805)
..+... ...+ .|.|.+++.+|+|.|+|.|.| ..|..+..+.|.|...++.+ ..+...|++++
T Consensus 128 ~~~~~~------~~~~--~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~P~i~~~~~~w~~i~ 192 (204)
T 3sgj_C 128 KGRKYF------HHNS--DFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVSTISSFFPPGYQGK 192 (204)
T ss_dssp EEEEEE------EECC--CEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC------------------
T ss_pred cEeecc------cCCc--eEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcCCCCcccccCCCccccc
Confidence 986431 1222 699999999999999999999 55566777778886544332 22233455543
|
| >3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C | Back alignment and structure |
|---|
Probab=99.86 E-value=8.5e-21 Score=187.55 Aligned_cols=192 Identities=20% Similarity=0.303 Sum_probs=146.0
Q ss_pred CCCeEEecC---CCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCce---EEEecCcEEEEEEcccccCCCe
Q psy2166 64 AKPVFIVPL---KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRF---KTTADFGFVTLDLTEVYDRDQG 137 (805)
Q Consensus 64 ~~p~~~~~~---~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~---~~~~~~~~~~L~I~~~~~~D~G 137 (805)
.+|.|+..+ +....+.+|+.++|.|.+. +.|.+.|.|+|+|..+....++ ..... ..+|.|.+++.+|+|
T Consensus 14 ~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G 89 (231)
T 3ojm_B 14 RAPYWTNTEKMEKRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ--HWSLIMESVVPSDKG 89 (231)
T ss_dssp EEEEESCGGGGCCSCEEEETTSCEEEECCEE--EESCCEEEEEETTEECCGGGSTTCCEEEGG--GTEEEECSCCGGGCE
T ss_pred cCCccccccccCceeEEEccCCCEEEEEecc--cCCCCeEEEEECCccccccccccceeeecC--cceEEEecCCcccCE
Confidence 456666554 2467899999999999998 5788899999999998765543 33322 237999999999999
Q ss_pred EEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCC
Q psy2166 138 IYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 217 (805)
Q Consensus 138 ~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~ 217 (805)
.|+|.+.|..|.......|.|...+. .+|.+.........+.+
T Consensus 90 ~Y~C~~~n~~~~~~~~~~l~V~~~~~-------------------------------------~~p~~~~~~~~~~~~~~ 132 (231)
T 3ojm_B 90 NYTCVVENEYGSINHTYHLDVVERSR-------------------------------------HRPILQAGLPANASTVV 132 (231)
T ss_dssp EEEEEEEETTEEEEEEEEEEEECCCC-------------------------------------CCCEECTTCSCCEEEET
T ss_pred EEEEEEecccCcccccEEEEEEcCCC-------------------------------------CCCceeeccCCceEEEe
Confidence 99999999999888888888865431 22333333323335789
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEE----CCEEccCCCcE--EEEEE-----cCeEEEEEcCCCCcccEEEEEEEEcCCee
Q psy2166 218 GEIAHFEASLIPVGDQTMTVEFLY----NGKPIEASHRI--RTVHA-----FGMVVLEILGTKIEDTGVYTCRATNKWGQ 286 (805)
Q Consensus 218 g~~~~l~C~~~~~~~p~~~i~W~k----~g~~l~~~~~~--~~~~~-----~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~ 286 (805)
|+.+.|.|.+ .+.|.+.+.|++ +|..+...... ..... .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 133 g~~~~l~C~~--~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 210 (231)
T 3ojm_B 133 GGDVEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQ 210 (231)
T ss_dssp TCCEEEECCE--ECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred CCcEEEEEEE--ecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccce
Confidence 9999999988 678889999999 88877544321 11111 11247999999999999999999999999
Q ss_pred EEEEEEEEEecc
Q psy2166 287 AEISVNLECVDK 298 (805)
Q Consensus 287 ~~~~~~l~v~~~ 298 (805)
.+.++.|.|...
T Consensus 211 ~~~~~~l~V~~~ 222 (231)
T 3ojm_B 211 ANQSAWLTVLPK 222 (231)
T ss_dssp EEEEEEEEEECC
T ss_pred EeeEEEEEEecC
Confidence 999999988754
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X | Back alignment and structure |
|---|
Probab=99.86 E-value=1.2e-21 Score=191.08 Aligned_cols=125 Identities=18% Similarity=0.261 Sum_probs=101.9
Q ss_pred EEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCC
Q psy2166 627 VILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 706 (805)
Q Consensus 627 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~ 706 (805)
..|.|.+++.+|+|.|+|.|.|..|.....+.|.|..+ |.+...+.+. .+.+
T Consensus 84 ~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~---------------------------p~~~~~~~~~-~~~~ 135 (214)
T 3jz7_A 84 ASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVK---------------------------PSGTRCFVDG-SEEI 135 (214)
T ss_dssp CCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC---------------------------CBSCEEEEES-CCBT
T ss_pred ccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcC---------------------------CCCceeeeec-ceec
Confidence 44999999999999999999999999999999999853 4443334444 6889
Q ss_pred CCeEEEEEEE-eecCCCCeEEEEEEC--CEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEE
Q psy2166 707 GEIAHFEASL-IPVGDQTMTVEFLYN--GKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783 (805)
Q Consensus 707 G~~~~l~C~~-~~~g~p~~~v~W~~~--g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 783 (805)
|+.++|.|.+ . |.|.|.|+|+|+ +..+...... ....+ .|.|.++..+|+|.|+|.|.|.+|..+.++.|.
T Consensus 136 g~~v~l~C~~~~--g~p~~~v~W~~~~~~~~~~~~~~~--~~~~~--~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~ 209 (214)
T 3jz7_A 136 GNDFKLKCEPKE--GSLPLQFEWQKLSDSQTMPTPWLA--EMTSP--VISVKNASSEYSGTYSCTVQNRVGSDQCMLRLD 209 (214)
T ss_dssp TCCEEEEEECSB--CCSSCEEEEEECSTTCCCCGGGGG--GTTSS--EEEECSCCGGGCEEEEEEEECSSCEEEEEEEEC
T ss_pred CCcEEEEecCCC--CCCCCEEEEEECCCCCccCcccee--ccCCC--EEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEE
Confidence 9999999999 6 999999999995 4444433221 11223 799999999999999999999999999999998
Q ss_pred EE
Q psy2166 784 CV 785 (805)
Q Consensus 784 V~ 785 (805)
|.
T Consensus 210 V~ 211 (214)
T 3jz7_A 210 VV 211 (214)
T ss_dssp CB
T ss_pred Ee
Confidence 86
|
| >2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-21 Score=187.66 Aligned_cols=186 Identities=24% Similarity=0.417 Sum_probs=136.9
Q ss_pred CCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCC--ceEEEEeCcE--EEEEEcccCcCCceEE
Q psy2166 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN--RVKMVSDFGF--VVMDIAYVQSHDSGEY 377 (805)
Q Consensus 302 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~--~~~~~~~~~~--~~l~i~~v~~~d~G~Y 377 (805)
.+|.+...+.... +.+|+.++|.|.+. +.|.+.|.|+++|..+.... ...+...++. ..|.|.++..+|+|.|
T Consensus 8 ~~P~i~~~p~~~~-v~~G~~v~L~C~~~--g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y 84 (217)
T 2vr9_A 8 QSPRIIEHPTDLV-VKKNEPATLNCKVE--GKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEY 84 (217)
T ss_dssp CCCEEEECCCCEE-ECTTSCEEECCEEE--CSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEE
T ss_pred CCCEEecCCCceE-EeCCCcEEEEEEcC--CCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceE
Confidence 6788887776655 88999999999997 78889999999999987542 2222222222 2246888999999999
Q ss_pred EEEEEeCceeeEE-EEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEE
Q psy2166 378 VCRAWNKYGEDFT-RATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAH 456 (805)
Q Consensus 378 ~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (805)
+|.+.|..|.... .+.+.|...
T Consensus 85 ~C~~~n~~g~~~~~~~~l~v~~~--------------------------------------------------------- 107 (217)
T 2vr9_A 85 WCVAKNRVGQAVSRHASLQIAVL--------------------------------------------------------- 107 (217)
T ss_dssp EEEEEETTEEEECCCEEEEECEE---------------------------------------------------------
T ss_pred EEEEecCCCccccccceEEEEEe---------------------------------------------------------
Confidence 9999999887643 456655421
Q ss_pred EEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEE-eeCCCCCcEEEEEEC
Q psy2166 457 FEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARL-TPVTDPDLVVEWFYN 535 (805)
Q Consensus 457 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v-~~~g~p~~~v~W~~~ 535 (805)
+|.+...+... .+.+|+.++|.|.+ . +.|.+.++|+++
T Consensus 108 --------------------------------------~~~~~~~~~~~-~~~~g~~v~l~C~~~~--g~p~~~v~W~~~ 146 (217)
T 2vr9_A 108 --------------------------------------RDDFRVEPKDT-RVAKGETALLECGPPK--GIPEPTLIWIKD 146 (217)
T ss_dssp --------------------------------------CCSCSBCCCCE-EECTTSCEEECCBCCC--EESCCEEEEEET
T ss_pred --------------------------------------CCCcEECCCcc-EEcCCCeEEEEEECCC--CCCCCeEEEEEC
Confidence 22222222332 37899999999998 6 678889999999
Q ss_pred CEEccC--------CCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeee
Q psy2166 536 GKKLPH--------GHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSK 591 (805)
Q Consensus 536 g~~l~~--------~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 591 (805)
|..+.. ..++....+ + .|.|.+++.+|+|.|+|.|.|..|....+..+.+...
T Consensus 147 g~~~~~~~~~~~~~~~~~~~~~~-~--~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~~ 207 (217)
T 2vr9_A 147 GVPLDDLKAMSFGASSRVRIVDG-G--NLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQV 207 (217)
T ss_dssp TEEECCCCCC---CCCSEEEETT-T--EEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC-
T ss_pred CcCCCcccccccccCCcEEecCC-C--cEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEEe
Confidence 999973 333333222 2 5999999999999999999999999887766655543
|
| >2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.4e-21 Score=191.98 Aligned_cols=202 Identities=17% Similarity=0.162 Sum_probs=124.4
Q ss_pred hhhhhcCccccCCCCCCC------CcCCCeEEecCCCCceecCCCcEEEEEEEecCCCC-----CceEEEEEC--CEec-
Q psy2166 44 VEHALAGKYQRQPSGPEE------TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDP-----NLKIEWIFN--GKPL- 109 (805)
Q Consensus 44 ~~~~d~g~y~c~~~~~~~------~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p-----~~~v~W~k~--g~~i- 109 (805)
++.+|+|.|+|.+..... ...+|.+.. .+..+.+.+|+.++|.|.+. +.| .+.|.|+|+ |..+
T Consensus 11 v~~~dsg~Y~C~a~g~~~~~~~~~~~~~~~~~~-~p~~~~v~~G~~v~L~C~~~--~~~~~~~~~~~v~W~k~~~g~~~~ 87 (254)
T 2c1o_A 11 VRPGTSVKLSCKASGYSFTNYWMNWLRELVMTQ-SPLTLSVTIGQPASISCKSS--QSLLYSNGKTYLNWLLQRPGQSPK 87 (254)
T ss_dssp ---------------------------CCCEEE-ECSEEEECTTSCEEEEEEES--SCCBCSSSCBCEEEEEECTTSCCE
T ss_pred ecCCccEEEEEcCchhhhhhhhhheeeceeEEe-CCceEEecCCCcEEEEeecc--CcccccCCCCceEEEEeCCCCCce
Confidence 788999999998873211 122344443 34478999999999999998 455 489999984 3322
Q ss_pred -----------CCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEE-EEEEEEeccccccccccCCCCcchh
Q psy2166 110 -----------ELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFT-STTIYCSTKESLIERTQHPKGEEGL 177 (805)
Q Consensus 110 -----------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~p~~~~~~ 177 (805)
....|+.+..+++..+|.|.+++.+|+|.|+|.|.|..+.... ...+.|....
T Consensus 88 ~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~--------------- 152 (254)
T 2c1o_A 88 RLIYLVSKLDSGDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRAD--------------- 152 (254)
T ss_dssp EEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCC---------------
T ss_pred EEEEeccccCCCccceEEEecCCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCC---------------
Confidence 1236888877778889999999999999999999987553322 2345554211
Q ss_pred hhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcE--EEE
Q psy2166 178 EKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI--RTV 255 (805)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~--~~~ 255 (805)
.+|.+........ ..+|+.++|.|.+.....+.+.+.|+|+|..+...... ...
T Consensus 153 -----------------------~~P~v~~~~~~~~-~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~ 208 (254)
T 2c1o_A 153 -----------------------AAPTVSIFPPSSE-QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQ 208 (254)
T ss_dssp -----------------------BCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCC
T ss_pred -----------------------CCCeeEeecCChh-hccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccc
Confidence 2455554433322 33677999999985322233689999999988655111 100
Q ss_pred E-Ec----CeEEEEEcCCCCcccEEEEEEEEcCCeeE
Q psy2166 256 H-AF----GMVVLEILGTKIEDTGVYTCRATNKWGQA 287 (805)
Q Consensus 256 ~-~~----~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~ 287 (805)
. .+ ....|.|.++..+|+|.|+|.|.|.....
T Consensus 209 ~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~ 245 (254)
T 2c1o_A 209 DSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 245 (254)
T ss_dssp CTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred cCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence 0 01 13589999999999999999999987654
|
| >3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-20 Score=180.69 Aligned_cols=184 Identities=16% Similarity=0.199 Sum_probs=139.2
Q ss_pred CCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEE
Q psy2166 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRA 143 (805)
Q Consensus 64 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 143 (805)
..+.|+..+. .+.+.+|+.++|.|.+. +.|.+.|.|+|++..+..+.. .+|.|.+++.+|+|.|+|.+
T Consensus 17 ~~~~i~~~p~-~~~v~~G~~v~L~C~~~--~~p~~~v~W~~~~~~~~~~~~---------~~L~i~~v~~~d~G~Y~C~~ 84 (218)
T 3k0w_A 17 RGSKITVNPE-SKAVLAGQFVKLCCRAT--GHPFVQYQWFKMNKEIPNGNT---------SELIFNAVHVKDAGFYVCRV 84 (218)
T ss_dssp --CCEEECCC-CEEEETTSBEEEECEET--TTTSSEEEEEETTEECTTCCS---------SEEEETTCCGGGCEEEEEEE
T ss_pred CCCEEEECCC-CeEEeCCCcEEEEeeec--CCCCCEEEEEECCEECCCCCC---------CEEEEccCChhhCeEeEEEE
Confidence 4566666555 78999999999999998 688899999999999876532 27999999999999999999
Q ss_pred EeCCeeE-EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEE
Q psy2166 144 WNLAGET-FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAH 222 (805)
Q Consensus 144 ~n~~g~~-~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~ 222 (805)
.|..|.. .....|.|...+........ .....+|.+...+... .+.+|+.+.
T Consensus 85 ~n~~~~~~s~~~~l~V~~~~~~~~~~~~--------------------------~~~~~~p~~~~~~~~~-~v~~G~~v~ 137 (218)
T 3k0w_A 85 NNNFTFEFSQWSQLDVCDIPESFQRSVD--------------------------GVSESKLQICVEPTSQ-KLMPGSTLV 137 (218)
T ss_dssp ECTTCCEECCCEEEEEECCCGGGCTTCC--------------------------SBCCSSCEEEECCCCE-EECTTCCEE
T ss_pred EcCCCCceeeEEEEEEEccCcccccccc--------------------------cccCCCceEEECCCce-eecCCCcEE
Confidence 9987754 44567777654322110000 0111346666665554 478999999
Q ss_pred EEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCee-EEEEEEEEEec
Q psy2166 223 FEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ-AEISVNLECVD 297 (805)
Q Consensus 223 l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~-~~~~~~l~v~~ 297 (805)
|.|.+ .+.|.+.+.|+++|..+..... ..|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|..
T Consensus 138 L~C~~--~g~p~~~v~W~~~~~~~~~~~~---------~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~ 202 (218)
T 3k0w_A 138 LQCVA--VGSPIPHYQWFKNELPLTHETK---------KLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 202 (218)
T ss_dssp EECEE--EBSSCCEEEEEETTEECTTCCS---------SEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC
T ss_pred EEEEe--cccCCCeEEEEECCEECCCCCC---------CEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeC
Confidence 99998 6788899999999999876543 36999999999999999999998776 45666776653
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.1e-21 Score=185.25 Aligned_cols=88 Identities=19% Similarity=0.377 Sum_probs=73.9
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 770 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 770 (805)
+|.+...+... .+.+|+.+.|.|.+. |.|.|.|.|++++..+....+ +...++ .|.|.++..+|+|.|+|.|.
T Consensus 113 ~p~~~~~~~~~-~~~~g~~~~l~C~~~--g~p~p~v~W~~~~~~~~~~~~--~~~~~~--~L~i~~v~~~d~G~Y~C~a~ 185 (201)
T 3s97_C 113 PADIVVQFKDV-YALMGQNVTLECFAL--GNPVPDIRWRKVLEPMPSTAE--ISTSGA--VLKIFNIQLEDEGIYECEAE 185 (201)
T ss_dssp EEEEEEECCCE-EEETTCCEEEEEEEE--EESCCEEEEEETTBCCCTTCE--EETTTT--EEEECSCCGGGCEEEEEEEE
T ss_pred CCceEecCCce-EEecCCcEEEEEEcc--CCCCCceEEEeCCCcCCCcee--ecCCCC--EEEEccCChhhCEEEEEEEE
Confidence 45555555555 889999999999998 899999999999998775532 333344 79999999999999999999
Q ss_pred cCCccEEEEEEEEEE
Q psy2166 771 NKWGQAEISVNLECV 785 (805)
Q Consensus 771 N~~G~~~~~~~l~V~ 785 (805)
|..|..+.++.|.|+
T Consensus 186 n~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 186 NIRGKDKHQARIYVQ 200 (201)
T ss_dssp ETTEEEEEEEEEEEE
T ss_pred ecCCceeeeEEEEEe
Confidence 999999999999985
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.9e-20 Score=180.73 Aligned_cols=129 Identities=14% Similarity=0.104 Sum_probs=92.5
Q ss_pred CEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCccccc
Q psy2166 625 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNL 704 (805)
Q Consensus 625 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v 704 (805)
+...|.|.+++.+|+|.|+|.|.|..|.....+.+.+..++ ...+... .+
T Consensus 81 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~-----------------------------~~~~~~~-~~ 130 (226)
T 4f80_A 81 GKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALG-----------------------------SDLHVDV-KG 130 (226)
T ss_dssp TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCC-----------------------------CCCEEEE-EE
T ss_pred CeEEEEEeeCchHHCeeEEEEEECCCcEEEEEEEEeeccce-----------------------------eccccee-ee
Confidence 45679999999999999999999988877766555554211 1112223 67
Q ss_pred CCCCeEEEEEEEeecC-CCCeEEEEEECC-EEccCCCCeEEEeeCc-EEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 705 SEGEIAHFEASLIPVG-DQTMTVEFLYNG-KPIEASHRIRTVHAFG-MVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 705 ~~G~~~~l~C~~~~~g-~p~~~v~W~~~g-~~l~~~~~~~~~~~~~-~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
.+|+.+.|.|.+. | .|.|.|+|+|++ ..+............+ ...+.+.+++.+|+|.|+|.|.|.+|....++.
T Consensus 131 ~~g~~v~l~c~~~--g~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~ 208 (226)
T 4f80_A 131 YKDGGIHLECRST--GWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTAS 208 (226)
T ss_dssp EETTEEEEEEEEE--EEBSCCEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEE
T ss_pred ccCCceeeEEEec--cCCCCCEEEEEECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEE
Confidence 8899999999998 6 699999999965 5554443333333333 344556677889999999999999999999999
Q ss_pred EEEE
Q psy2166 782 LECV 785 (805)
Q Consensus 782 l~V~ 785 (805)
|.|.
T Consensus 209 v~v~ 212 (226)
T 4f80_A 209 ISIA 212 (226)
T ss_dssp ECCC
T ss_pred EEEC
Confidence 8884
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=181.94 Aligned_cols=179 Identities=15% Similarity=0.096 Sum_probs=126.9
Q ss_pred CCceecCC--CcEEEEEEEecCCCCCceEEEEE---CCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCe
Q psy2166 74 PEFKLGEA--QPLHLEAQVEPKNDPNLKIEWIF---NGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAG 148 (805)
Q Consensus 74 ~~~~v~~G--~~v~L~C~~~~~~~p~~~v~W~k---~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g 148 (805)
..+.+.+| +.++|.|.+. .|.+.|+|++ ||..+..+.++.....+ .|.|.+++.+|+|.|+|.|.|..+
T Consensus 15 ~~v~v~eG~~~~v~L~C~~~---~p~~~v~w~~~~~~g~~~~~~~~~~~~~~~---~l~I~~v~~~D~G~Y~C~a~n~~~ 88 (213)
T 2x1w_L 15 GVVYITENKNKTVVIPCLGS---ISNLNVSLCARYPEKRFVPDGNRISWDSKK---GFTIPSYMISYAGMVFCEAKINDE 88 (213)
T ss_dssp EEEEECCSTTCEEEECCCBS---STTCCEEEEEETTTEEECCCSSSCEEETTT---EEEEEGGGTTTCSEEEEEEC----
T ss_pred eEEEEecCCCccEEEeeccC---CCCcEEEEEhhcCCCccccCCCcccccCCc---cEEEccCChhcCceEEEEEEECCe
Confidence 46789999 9999999997 3668999988 47777766566554443 699999999999999999998544
Q ss_pred eEEEE-EEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEE
Q psy2166 149 ETFTS-TTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASL 227 (805)
Q Consensus 149 ~~~~~-~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~ 227 (805)
...+. ..|.|... .+|.+...+.....+.+|+.++|.|.+
T Consensus 89 ~~~s~~~~l~v~~~---------------------------------------~~p~~~~~~~~~~~v~~G~~v~L~C~~ 129 (213)
T 2x1w_L 89 SYQSIMYIVVVVGY---------------------------------------RIYDVVLSPSHGIELSVGEKLVLNCTA 129 (213)
T ss_dssp CEECCCEEEEECBC---------------------------------------CEEEEEEESCSCEEEETTCCEEEEEEE
T ss_pred eEEEEEEEEEEeCC---------------------------------------cccceEEcCCCCeEEcCCCCEEEEEEE
Confidence 33322 45555321 223344444333357899999999999
Q ss_pred eeCCCCCeEEEEEECCEEccCCCc-EEEEE-------EcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEec
Q psy2166 228 IPVGDQTMTVEFLYNGKPIEASHR-IRTVH-------AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD 297 (805)
Q Consensus 228 ~~~~~p~~~i~W~k~g~~l~~~~~-~~~~~-------~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~ 297 (805)
.....+.+.+.|+++|..+..... ..... ......|.|.+++.+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 130 ~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~ 207 (213)
T 2x1w_L 130 RTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 207 (213)
T ss_dssp EECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred ECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEec
Confidence 533344568999999886543211 10100 12245799999999999999999999999999999999874
|
| >2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A | Back alignment and structure |
|---|
Probab=99.84 E-value=8.9e-21 Score=184.66 Aligned_cols=191 Identities=24% Similarity=0.414 Sum_probs=135.5
Q ss_pred CCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCC-----ceEEEEeCcEE--EEEEcccCcCCc
Q psy2166 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN-----RVKMVSDFGFV--VMDIAYVQSHDS 374 (805)
Q Consensus 302 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~-----~~~~~~~~~~~--~l~i~~v~~~d~ 374 (805)
.+|.+...+.... +.+|+.++|.|.+. +.|.+.+.|++++..+.... ......++... .|.|.++..+|+
T Consensus 8 ~pp~i~~~p~~~~-v~~G~~v~l~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 84 (212)
T 2v9r_A 8 FPPRIVEHPSDLI-VSKGEPATLNCKAE--GRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDE 84 (212)
T ss_dssp EEEEEEECCCCEE-ECTTCCEEECCEEE--EESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSC
T ss_pred CCcceecCCCceE-EeCCCcEEEEEEcC--CCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccC
Confidence 4667776666554 88999999999997 77888999999999886432 11122222222 244567789999
Q ss_pred eEEEEEEEeCceeeE-EEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCc
Q psy2166 375 GEYVCRAWNKYGEDF-TRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQ 453 (805)
Q Consensus 375 G~Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (805)
|.|+|.+.|..|... ..+.|.|...+
T Consensus 85 G~Y~C~~~n~~g~~~~~~~~l~V~~~~----------------------------------------------------- 111 (212)
T 2v9r_A 85 GVYVCVARNYLGEAVSHDASLEVAILR----------------------------------------------------- 111 (212)
T ss_dssp EEEEEEEEETTEEEECCCEEEEECEEC-----------------------------------------------------
T ss_pred eEEEEEEECCCCceeecceEEEEEecc-----------------------------------------------------
Confidence 999999999988663 45666664321
Q ss_pred eEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEE-eeCCCCCcEEEE
Q psy2166 454 SAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARL-TPVTDPDLVVEW 532 (805)
Q Consensus 454 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v-~~~g~p~~~v~W 532 (805)
|.+...+... .+.+|+.++|.|.+ . +.|.+.++|
T Consensus 112 ------------------------------------------~~~~~~~~~~-~~~~g~~~~l~C~~~~--~~p~~~v~W 146 (212)
T 2v9r_A 112 ------------------------------------------DDFRQNPSDV-MVAVGEPAVMECQPPR--GHPEPTISW 146 (212)
T ss_dssp ------------------------------------------SSCSBCCCCE-EEETTSCEEEECBCCC--EESCCEEEE
T ss_pred ------------------------------------------ccceeCCCce-EecCCCcEEEEEecCC--CCCCCEEEE
Confidence 2222222222 37899999999998 6 678889999
Q ss_pred EECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEE-EEEEEeeeeeeee
Q psy2166 533 FYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK-ASLKCVSKTNLIL 596 (805)
Q Consensus 533 ~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~ 596 (805)
+++|..+.......... ++ .|.|.++..+|+|.|+|.|.|..|..... +.|.|..+|.+..
T Consensus 147 ~~~~~~l~~~~~~~~~~-~~--~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~~~~ 208 (212)
T 2v9r_A 147 KKDGSPLDDKDERITIR-GG--KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFVK 208 (212)
T ss_dssp EETTEEECTTSTTEEEE-TT--EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC------
T ss_pred EECCccCCCCcceEEcc-CC--eEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCchHhh
Confidence 99999997654333333 23 59999999999999999999999987654 8999998887643
|
| >1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-20 Score=181.33 Aligned_cols=178 Identities=18% Similarity=0.228 Sum_probs=129.9
Q ss_pred ecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEec------------CCCCceEEEecCcEEEEEEcccccCCCe
Q psy2166 70 VPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQG 137 (805)
Q Consensus 70 ~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G 137 (805)
...+..+.+.+|+.++|.|.+. +.|.+.|.|+|++..+ ....++.+.. .+|.|.+++.+|+|
T Consensus 5 ~~~~~~~~v~~G~~v~L~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~v~~~D~G 78 (212)
T 1f97_A 5 YTAQSDVQVPENESIKLTCTYS--GFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS----SGITFSSVTRKDNG 78 (212)
T ss_dssp ECSCSEEEEETTCCEEEECEEE--SCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET----TEEEESCCCGGGCE
T ss_pred EecCCCeEEEcCCCEEEEeEeC--CCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec----eeEEEcccCcccCe
Confidence 3445578899999999999998 6789999999987652 2345665554 38999999999999
Q ss_pred EEEEEEEeCCe--eEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccccccccc
Q psy2166 138 IYTCRAWNLAG--ETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNL 215 (805)
Q Consensus 138 ~Y~C~a~n~~g--~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v 215 (805)
.|+|.+.+..| .......|.|..++.+ ...+.. ..+
T Consensus 79 ~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~-----------------------------------------~~~~~~-~~~ 116 (212)
T 1f97_A 79 EYTCMVSEEGGQNYGEVSIHLTVLVPPSK-----------------------------------------PTISVP-SSV 116 (212)
T ss_dssp EEEEEEEETTSSSEEEEEEEEEEEBCCCC-----------------------------------------CEEECC-SEE
T ss_pred EEEEEEEccCCCcccEEEEEEEEEcCCCC-----------------------------------------cccCCc-ccc
Confidence 99999999866 4556667777654321 111111 136
Q ss_pred CCCceEEEEEEEeeCCCCCeEEEEEECCE-EccCCCcE-------EEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeE
Q psy2166 216 SEGEIAHFEASLIPVGDQTMTVEFLYNGK-PIEASHRI-------RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 287 (805)
Q Consensus 216 ~~g~~~~l~C~~~~~~~p~~~i~W~k~g~-~l~~~~~~-------~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~ 287 (805)
.+|+.++|.|.+. .+.|.+.+.|++++. .+...... ..........|.|.+++.+|+|.|+|.|.|..|..
T Consensus 117 ~~g~~~~l~C~~~-~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 195 (212)
T 1f97_A 117 TIGNRAVLTCSEH-DGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTA 195 (212)
T ss_dssp ETTSCEEEEEECS-CCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCC
T ss_pred CCCCeEEEEEEcc-cCcCCCEEEEEeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCc
Confidence 7899999999831 688899999999999 87654331 11122234579999999999999999999999887
Q ss_pred --EEEEEEEEe
Q psy2166 288 --EISVNLECV 296 (805)
Q Consensus 288 --~~~~~l~v~ 296 (805)
+..+.|.|.
T Consensus 196 ~~s~~~~l~V~ 206 (212)
T 1f97_A 196 MRSEAAHMDAV 206 (212)
T ss_dssp EECCCEEEEEE
T ss_pred cccceEEEEEE
Confidence 445555554
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-20 Score=177.19 Aligned_cols=174 Identities=8% Similarity=0.024 Sum_probs=126.4
Q ss_pred cCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEE
Q psy2166 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 63 ~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
+++|.+...+. . .|.+|++++|.|.+. + +.+.+.|+|+|..+....+. .........|.|.+++.+|+|.|+|.
T Consensus 3 ~~~P~i~~~p~-~-~v~~G~~v~L~C~~~--~-~~~~~~w~k~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~ 76 (196)
T 3p2t_A 3 LPKPTLWAEPG-S-VISWGNSVTIWCQGT--L-EAREYRLDKEESPAPWDRQN-PLEPKNKARFSIPSMTEDYAGRYRCY 76 (196)
T ss_dssp BCCCEEEEESC-S-EEETTCCEEEEEECC--T-TCCEEEEEETTSCSCSEEEC-CCSSSSEEEEEESSCCGGGCEEEEEE
T ss_pred CCCCEEEccCC-C-cCCCCCcEEEEeeCC--C-CCCEEEEEECCCCCcccccc-cccCCceEEEEeccCCcccCceEEEE
Confidence 46788777665 3 889999999999988 3 66899999999887642211 11123455899999999999999999
Q ss_pred EEeCCee--EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCce
Q psy2166 143 AWNLAGE--TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEI 220 (805)
Q Consensus 143 a~n~~g~--~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~ 220 (805)
|.|..|. ......|.|.... .+|.+...+.. .+.+|+.
T Consensus 77 a~n~~g~~~~s~~~~l~V~~~~--------------------------------------~~p~~~~~~~~--~v~~G~~ 116 (196)
T 3p2t_A 77 YRSPVGWSQPSDPLELVMTGAY--------------------------------------SKPTLSALPSP--LVTSGKS 116 (196)
T ss_dssp EEETTEEBCCCCCEEEEEECSS--------------------------------------CCCEEEEESCS--EECTTCC
T ss_pred EeCCCcccCCCccEEEEecCCC--------------------------------------CCCEEEeCCcc--eecCCCe
Confidence 9999873 2344556664321 23555544433 3789999
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcE-EEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCe
Q psy2166 221 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRI-RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 285 (805)
Q Consensus 221 ~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 285 (805)
++|.|.+. + +.+.+.|+|+|..+...... ..........|.|.+++.+|+|.|+|.|.|..+
T Consensus 117 v~L~C~~~--~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~ 179 (196)
T 3p2t_A 117 VTLLCQSR--S-PMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFS 179 (196)
T ss_dssp EEEEEEEE--E-EEEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred EEEEEecC--C-CCCEEEEEeCCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence 99999884 3 34689999999877544322 112223456899999999999999999999765
|
| >3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.8e-20 Score=177.58 Aligned_cols=169 Identities=15% Similarity=0.184 Sum_probs=124.7
Q ss_pred cCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCce-EEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEE
Q psy2166 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLK-IEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTC 141 (805)
Q Consensus 63 ~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~-v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 141 (805)
.++|.+...+. ...+.+|+.++|.|.+. +.|.+. |.|+|||..+.... .+|.|.+++.+|+|.|+|
T Consensus 5 ~p~p~i~~~p~-~~~v~~G~~v~L~C~~~--~~p~~~~v~W~k~g~~l~~~~----------~~L~i~~v~~~D~G~Y~C 71 (204)
T 3sgj_C 5 LPKAVVFLEPQ-WYRVLEKDSVTLKCQGA--YSPEDQSTQWFHNESLISSQA----------SSYFIDAATVDDSGEYRC 71 (204)
T ss_dssp -CBCEEEEESC-CSEEETTCCEEEEEECC--SSSSCCCEEEEETTEEESCCS----------SEEEESSCCGGGCEEEEE
T ss_pred CCCCeEEEcCC-CeEEECCCCEEEEEcCC--CCCCCcEEEEEECCEEcccCc----------cEEEEecccccCCEEEEE
Confidence 45677666665 47899999999999998 566555 99999999887653 279999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceE
Q psy2166 142 RAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIA 221 (805)
Q Consensus 142 ~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~ 221 (805)
.+.|. .......|.|...+ .+...+. ..+.+|+.+
T Consensus 72 ~a~n~--~~s~~~~l~V~~~p-----------------------------------------~~~~~~~--~~v~~G~~v 106 (204)
T 3sgj_C 72 QTQLS--TLSDPVQLEVHIGW-----------------------------------------LLLQAPR--WVFKEEDPI 106 (204)
T ss_dssp EETTS--BCCCCEEEEEECSS-----------------------------------------EEEECSC--SEEETTCCE
T ss_pred EeCCC--cccccEEEEEecCc-----------------------------------------eEecCCc--eeEeCCCcE
Confidence 99874 33345566665332 2222222 237789999
Q ss_pred EEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcC-CeeEEEEEEEEEecc
Q psy2166 222 HFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNK-WGQAEISVNLECVDK 298 (805)
Q Consensus 222 ~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~-~g~~~~~~~l~v~~~ 298 (805)
+|.|.+. .+.|.+.+.|+|+|..+... .....|.|.+++.+|+|.|+|.|.|. .+..+..+.|.|...
T Consensus 107 ~L~C~~~-~~~p~~~v~W~k~g~~~~~~--------~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~ 175 (204)
T 3sgj_C 107 HLRCHSW-KNTALHKVTYLQNGKGRKYF--------HHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQG 175 (204)
T ss_dssp EEEEEEG-GGCCCEEEEEEETTEEEEEE--------EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred EEEEEec-CCCCCceEEEEECCcEeecc--------cCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCc
Confidence 9999883 24567999999999876321 11247999999999999999999994 444566677777653
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.6e-21 Score=201.95 Aligned_cols=201 Identities=15% Similarity=0.168 Sum_probs=137.8
Q ss_pred CCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCce
Q psy2166 466 DPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY 545 (805)
Q Consensus 466 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~ 545 (805)
.+.|.|.+.... .......-.+|.|...+.... +.+|++++|.|.+. |.|.+.+.|++++..+......
T Consensus 137 ~~~~~C~~~~~l--------~~l~~~~c~~P~i~~~~~~~~-v~~G~~v~L~C~~~--g~p~p~i~W~~~~~~~~~~~~~ 205 (347)
T 2ifg_A 137 EQKLQCHGQGPL--------AHMPNASCGVPTLKVQVPNAS-VDVGDDVLLRCQVE--GRGLEQAGWILTELEQSATVMK 205 (347)
T ss_dssp GGCCCCSSSSCS--------SCCCCTTCCCCEEEEECCSSC-CBTTCCEEEEEEEE--CSSCCCCCEEESCCCSSEEECC
T ss_pred ccCCCCCCChHH--------hcCCcccCCCCceeccCCceE-EeCCCcEEEEEEEe--cCCCCEEEEEcCCceeeccccc
Confidence 456777765411 111223446888888776654 89999999999998 7788999999998654221000
Q ss_pred EEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCC
Q psy2166 546 RTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFG 625 (805)
Q Consensus 546 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~ 625 (805)
........
T Consensus 206 --~~~~~~~~---------------------------------------------------------------------- 213 (347)
T 2ifg_A 206 --SGGLPSLG---------------------------------------------------------------------- 213 (347)
T ss_dssp --CCCSSEEE----------------------------------------------------------------------
T ss_pred --ceecccce----------------------------------------------------------------------
Confidence 00111223
Q ss_pred EEEEEeccCCCCCcE-EEEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCccccc
Q psy2166 626 IVILDILYCYEENSG-VYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNL 704 (805)
Q Consensus 626 ~~~L~i~~~~~~d~G-~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v 704 (805)
|.|.+++.+|+| .|+|.|.|..|.....+.|.|.. +|.+ ... .+
T Consensus 214 ---L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~---------------------------~P~i----~~~-~~ 258 (347)
T 2ifg_A 214 ---LTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSF---------------------------PASV----QLH-TA 258 (347)
T ss_dssp ---EEEESCCSTTTTCCEEECCEETTEECCEEECCCCBE---------------------------EEEE----EEC-CC
T ss_pred ---EEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcC---------------------------CCee----eec-cC
Confidence 455555555555 55555555555555555555543 2332 011 44
Q ss_pred CCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEee-------CcEEEEEEcCCCCCCCEEEEEEEEcCCccEE
Q psy2166 705 SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA-------FGMVVLEILGTKIEDTGVYTCRATNKWGQAE 777 (805)
Q Consensus 705 ~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~ 777 (805)
.+|+.++|.|.+. |.|.|.|+|+|+|..+..+........ ....+|.|.+++.+|+|.|+|.|.|.+|.++
T Consensus 259 ~~g~~v~l~C~~~--g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~ 336 (347)
T 2ifg_A 259 VEMHHWCIPFSVD--GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQAS 336 (347)
T ss_dssp EESSSEEEEEEEE--EESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred ccCceEEEEEEee--ecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCcee
Confidence 5689999999999 899999999999999987666543221 1245799999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy2166 778 ISVNLECVV 786 (805)
Q Consensus 778 ~~~~l~V~~ 786 (805)
.++.|.|..
T Consensus 337 ~~~~l~V~~ 345 (347)
T 2ifg_A 337 ASIMAAFMD 345 (347)
T ss_dssp EEEEECSCC
T ss_pred eEEEEEecC
Confidence 999998864
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-20 Score=196.66 Aligned_cols=197 Identities=21% Similarity=0.201 Sum_probs=150.5
Q ss_pred hcCccccCCCCCCC-----CcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCc
Q psy2166 48 LAGKYQRQPSGPEE-----TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122 (805)
Q Consensus 48 d~g~y~c~~~~~~~-----~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~ 122 (805)
+.|.|+|....... .-.+|.+...+. ...+.+|+.++|.|.+. +.|.+.|.|++++..+....... ....
T Consensus 136 ~~~~~~C~~~~~l~~l~~~~c~~P~i~~~~~-~~~v~~G~~v~L~C~~~--g~p~p~i~W~~~~~~~~~~~~~~--~~~~ 210 (347)
T 2ifg_A 136 PEQKLQCHGQGPLAHMPNASCGVPTLKVQVP-NASVDVGDDVLLRCQVE--GRGLEQAGWILTELEQSATVMKS--GGLP 210 (347)
T ss_dssp GGGCCCCSSSSCSSCCCCTTCCCCEEEEECC-SSCCBTTCCEEEEEEEE--CSSCCCCCEEESCCCSSEEECCC--CCSS
T ss_pred cccCCCCCCChHHhcCCcccCCCCceeccCC-ceEEeCCCcEEEEEEEe--cCCCCEEEEEcCCceeecccccc--eecc
Confidence 56899997654322 234788776654 67899999999999998 68889999999987654321111 2234
Q ss_pred EEEEEEcccccCCCe-EEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCC
Q psy2166 123 FVTLDLTEVYDRDQG-IYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGR 201 (805)
Q Consensus 123 ~~~L~I~~~~~~D~G-~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (805)
..+|.|.+++.+|+| .|+|.|.|..|.......|.|..+
T Consensus 211 ~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~---------------------------------------- 250 (347)
T 2ifg_A 211 SLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFP---------------------------------------- 250 (347)
T ss_dssp EEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEE----------------------------------------
T ss_pred cceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCC----------------------------------------
Confidence 558999999999999 999999999988877766666443
Q ss_pred CCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEc-------CeEEEEEcCCCCcccE
Q psy2166 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF-------GMVVLEILGTKIEDTG 274 (805)
Q Consensus 202 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~-------~~~~L~i~~~~~~d~G 274 (805)
|.+ ....+.+|+.++|.|.+ .|.|.|.|.|+|+|..+............ ....|.|.+++.+|+|
T Consensus 251 -P~i-----~~~~~~~g~~v~l~C~~--~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G 322 (347)
T 2ifg_A 251 -ASV-----QLHTAVEMHHWCIPFSV--DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG 322 (347)
T ss_dssp -EEE-----EECCCEESSSEEEEEEE--EEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCE
T ss_pred -Cee-----eeccCccCceEEEEEEe--eecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCc
Confidence 332 01124578999999998 57789999999999999866554332211 2567999999999999
Q ss_pred EEEEEEEcCCeeEEEEEEEEEec
Q psy2166 275 VYTCRATNKWGQAEISVNLECVD 297 (805)
Q Consensus 275 ~Y~C~~~n~~g~~~~~~~l~v~~ 297 (805)
.|+|.|.|..|..+.++.|.|..
T Consensus 323 ~Y~C~a~N~~G~~~~~~~l~V~~ 345 (347)
T 2ifg_A 323 NYTLLAANPFGQASASIMAAFMD 345 (347)
T ss_dssp EEEEEEEETTEEEEEEEEECSCC
T ss_pred eEEEEEecCCCceeeEEEEEecC
Confidence 99999999999999988888763
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=8.9e-20 Score=176.94 Aligned_cols=125 Identities=17% Similarity=0.248 Sum_probs=102.6
Q ss_pred EEeccCCCCCcEEEEEEEEeCC-cceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCC
Q psy2166 629 LDILYCYEENSGVYECRATNKY-GSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEG 707 (805)
Q Consensus 629 L~i~~~~~~d~G~Y~C~a~n~~-g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G 707 (805)
|.|.+++.+|+|.|+|.+.|.. +.....+.|.|..++ ..|.+..... .+.+|
T Consensus 73 L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~------------------------~~p~i~~~~~---~~~~g 125 (208)
T 3r4d_A 73 LLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPV------------------------TQPFLQVTNT---TVKEL 125 (208)
T ss_dssp EEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCC------------------------CCCEEEESCS---SCCTT
T ss_pred EEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCC------------------------CCCEEecCCc---eEeeC
Confidence 9999999999999999999985 666677788887532 3466655444 38999
Q ss_pred CeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEE-EEEEEEEE
Q psy2166 708 EIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE-ISVNLECV 785 (805)
Q Consensus 708 ~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~-~~~~l~V~ 785 (805)
+.+.|.|.+. +.| |.|.|+++|..+..+.++.+..+++ +|.|.++..+|+|.|+|.|.|.+|... ..++|.|.
T Consensus 126 ~~v~l~C~~~--~~p-p~i~W~~~g~~l~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~ 199 (208)
T 3r4d_A 126 DSVTLTCLSN--DIG-ANIQWLFNSQSLQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII 199 (208)
T ss_dssp CCEEEEEECS--CTT-CEEEEEETTEECCCCSSEEEETTTT--EEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC
T ss_pred CCEEEEEECC--CCC-CceEEEECCEeCCCCCCeEEcCCCC--EEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEE
Confidence 9999999998 766 7999999999999888887666555 799999999999999999999999654 34455553
|
| >2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-20 Score=180.75 Aligned_cols=180 Identities=14% Similarity=0.129 Sum_probs=125.2
Q ss_pred cccCC--CeEEEEEEEeecCCCCcEEEEEE---CCEEccCCCceEEEEeCcEEEEEEcccCcCCceEEEEEEEeCceeeE
Q psy2166 315 GLKDG--DSAHFECTLTPVNDPELKVEWFH---NGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDF 389 (805)
Q Consensus 315 ~~~~g--~~~~l~C~~~~~~~p~~~v~W~~---~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~ 389 (805)
.+.+| +.++|.|.+. + |.+.+.|++ +|..+....++.... .. .|.|.++..+|+|.|+|.|.|..+...
T Consensus 18 ~v~eG~~~~v~L~C~~~--~-p~~~v~w~~~~~~g~~~~~~~~~~~~~-~~--~l~I~~v~~~D~G~Y~C~a~n~~~~~~ 91 (213)
T 2x1w_L 18 YITENKNKTVVIPCLGS--I-SNLNVSLCARYPEKRFVPDGNRISWDS-KK--GFTIPSYMISYAGMVFCEAKINDESYQ 91 (213)
T ss_dssp EECCSTTCEEEECCCBS--S-TTCCEEEEEETTTEEECCCSSSCEEET-TT--EEEEEGGGTTTCSEEEEEEC----CEE
T ss_pred EEecCCCccEEEeeccC--C-CCcEEEEEhhcCCCccccCCCcccccC-Cc--cEEEccCChhcCceEEEEEEECCeeEE
Confidence 37899 9999999985 4 668999988 477776554443322 22 488999999999999999998544333
Q ss_pred EE-EEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCC
Q psy2166 390 TR-ATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPD 468 (805)
Q Consensus 390 ~~-~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (805)
+. +.|.|..
T Consensus 92 s~~~~l~v~~---------------------------------------------------------------------- 101 (213)
T 2x1w_L 92 SIMYIVVVVG---------------------------------------------------------------------- 101 (213)
T ss_dssp CCCEEEEECB----------------------------------------------------------------------
T ss_pred EEEEEEEEeC----------------------------------------------------------------------
Confidence 22 4454421
Q ss_pred ceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc-eEE
Q psy2166 469 LVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR-YRT 547 (805)
Q Consensus 469 ~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~-~~~ 547 (805)
..+|.+...+.....+.+|++++|.|.+.+.+.+.+.++|+++|..+..... ...
T Consensus 102 ------------------------~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~ 157 (213)
T 2x1w_L 102 ------------------------YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRD 157 (213)
T ss_dssp ------------------------CCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEE
T ss_pred ------------------------CcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccc
Confidence 1234455555544358999999999999954455678999999986543211 101
Q ss_pred Ee-------eCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEeeeeee
Q psy2166 548 FH-------DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNL 594 (805)
Q Consensus 548 ~~-------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~ 594 (805)
.. ......|.|.+++.+|+|.|+|.|.|..|..+..+.|.|..+|.+
T Consensus 158 ~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~i 211 (213)
T 2x1w_L 158 LKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIE 211 (213)
T ss_dssp ECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC----
T ss_pred cccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEeccccc
Confidence 00 122457999999999999999999999999999999999887754
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-20 Score=176.74 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=59.8
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCc-cEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG-QAEISVN 781 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G-~~~~~~~ 781 (805)
.+.+|+.+.|.|.+. .+.|.+.+.|+|+|..+..... .+ .|.|.+++.+|+|.|+|.|.|..| ..+..+.
T Consensus 96 ~~~~g~~~~l~C~~~-~~~p~~~~~W~~~g~~~~~~~~------~~--~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~ 166 (176)
T 1f2q_A 96 VVMEGQPLFLRCHGW-RNWDVYKVIYYKDGEALKYWYE------NH--NISITNATVEDSGTYYCTGKVWQLDYESEPLN 166 (176)
T ss_dssp EEETTSCEEEEEEEG-GGCCEEEEEEEETTEECCSCCC------SS--EEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred eeeCCCCEEEEEEec-CCCCceEEEEEECCEEEeeecC------CC--eEEECCCCcccCEEEEEEEEeCCcceEecCEE
Confidence 678999999999994 2678889999999998854321 22 799999999999999999999755 4445567
Q ss_pred EEEEE
Q psy2166 782 LECVV 786 (805)
Q Consensus 782 l~V~~ 786 (805)
|.|..
T Consensus 167 l~V~~ 171 (176)
T 1f2q_A 167 ITVIK 171 (176)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 77754
|
| >3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-19 Score=169.90 Aligned_cols=164 Identities=21% Similarity=0.315 Sum_probs=126.7
Q ss_pred ccCCCeEEEEEEEeecCCCCc--EEEEEECCEEccCCCceEEEEeCcEEEEEEcccCcCCceEEEEEEEeCceeeEEEEE
Q psy2166 316 LKDGDSAHFECTLTPVNDPEL--KVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRAT 393 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~--~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 393 (805)
+.+|+.++|.|.+. +.|.+ .+.|+++|..+....... ....|.|. ..+|+|.|+|.|.|.. ...+.
T Consensus 10 v~~G~~v~l~C~~~--~~~~p~~~~~W~k~~~~l~~~~~~~-----~~~~l~i~--~~~d~G~Y~C~~~n~~---~~~~~ 77 (184)
T 3b5h_A 10 EDLGSKILLTCSLN--DSATEVTGHRWLKGGVVLKEDALPG-----QKTEFKVD--SDDQWGEYSCVFLPEP---MGTAN 77 (184)
T ss_dssp EEETTEEEEEEEEE--SCSSCCCEEEEESSSEEEECTTCCC-----SEEEEEEC--GGGCCEEEEEEEESTT---SCEEE
T ss_pred EecCCCEEEEEECC--CCCCCceEEEEEeCCEEeecccccC-----CcEEEEEe--chhhCeEEEEEEECCc---CcEEE
Confidence 67899999999998 55555 999999999887554321 23356666 6899999999999832 24455
Q ss_pred EEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEE
Q psy2166 394 IKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCEL 473 (805)
Q Consensus 394 l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 473 (805)
|.|.
T Consensus 78 l~V~---------------------------------------------------------------------------- 81 (184)
T 3b5h_A 78 IQLH---------------------------------------------------------------------------- 81 (184)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred EEEe----------------------------------------------------------------------------
Confidence 5552
Q ss_pred eecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCC-CcEEEEEE---CC-EEccC--CCceE
Q psy2166 474 FSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDP-DLVVEWFY---NG-KKLPH--GHRYR 546 (805)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p-~~~v~W~~---~g-~~l~~--~~~~~ 546 (805)
.+|.+...+... .+.+|+.++|.|.+. +.| .+.+.|++ +| ..+.. ..++.
T Consensus 82 --------------------~~P~~~~~~~~~-~~~~g~~~~l~C~~~--g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~ 138 (184)
T 3b5h_A 82 --------------------GPPRVKAVKSSE-HINEGETAMLVCKSE--SVPPVTDWAWYKITDSEDKALMNGSESRFF 138 (184)
T ss_dssp --------------------CSCCCEESCSEE-EECTTSCEEEEEECC--CSSCCCEEEEEECCSSSCEECCTTGGGTEE
T ss_pred --------------------cCCceeecCCCc-EEcCCCcEEEEEEEC--CCCCCCeEEEEEcCCCCCEEeecCCCCEEE
Confidence 455555554333 388999999999998 667 79999999 44 44433 26788
Q ss_pred EEeeCCEEEEEEccCC-CCCCEEEEEEEEcCCcceEEEEEEEEee
Q psy2166 547 TFHDFGIVILDILYCY-EENSGVYECRATNKYGSDVTKASLKCVS 590 (805)
Q Consensus 547 ~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 590 (805)
+..++....|.|.+++ .+|+|.|+|.|.|..|.....+.|.|..
T Consensus 139 ~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 183 (184)
T 3b5h_A 139 VSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183 (184)
T ss_dssp EEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred EEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEec
Confidence 8878888899999999 8999999999999999999999988864
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.7e-20 Score=176.29 Aligned_cols=174 Identities=8% Similarity=0.063 Sum_probs=115.0
Q ss_pred cCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEE
Q psy2166 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 63 ~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
+.+|.|...+. ..|.+|++++|.|.+. +.|. .|.|+|+|..+....+. .........|.|.+++.+|+|.|+|.
T Consensus 3 ~~~P~i~~~p~--~~v~~G~~v~L~C~~~--~~~~-~~~W~k~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~ 76 (196)
T 2d3v_A 3 LSKATLWAEPG--SVISRGNSVTIRCQGT--LEAQ-EYRLVKEGSPEPWDTQN-PLEPKNKARFSIPSMTEHHAGRYRCY 76 (196)
T ss_dssp CCBCEEEEESC--SEEETTCCEEEEEECC--TTCC-EEEEEETTCSSCSEEEC-CCSSTTEEEEEESSCCGGGCEEEEEE
T ss_pred CCCCEEEeCCC--CcccCCCeEEEEEeCC--CCCc-EEEEEECCCCCCccccc-ccCCccccEEEeccCChhHCeEEEEE
Confidence 46788877665 3889999999999988 4554 99999999877532110 11123455899999999999999999
Q ss_pred EEeCCeeEE--EEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCce
Q psy2166 143 AWNLAGETF--TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEI 220 (805)
Q Consensus 143 a~n~~g~~~--~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~ 220 (805)
|.|..|... ....|.|.... .+|.+...+. ..+.+|+.
T Consensus 77 a~n~~g~~~~s~~~~l~V~~~~--------------------------------------~~p~i~~~~~--~~v~~G~~ 116 (196)
T 2d3v_A 77 YYSPAGWSEPSDPLELVVTGFY--------------------------------------NKPTLSALPS--PVVTSGEN 116 (196)
T ss_dssp EEETTEECBCCCCEEEEEECSS--------------------------------------CCCEEEC-------------
T ss_pred EeCCCCcCCcCccEEEEecCCC--------------------------------------CCCeEEccCC--ccccCCCc
Confidence 999876433 34556665321 2355544332 24789999
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEE--EcCeEEEEEcCCCCcccEEEEEEEEcCCe
Q psy2166 221 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH--AFGMVVLEILGTKIEDTGVYTCRATNKWG 285 (805)
Q Consensus 221 ~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 285 (805)
++|.|.+ .+.| +.+.|+|+|..+.......... ......|.|.+++.+|+|.|+|.|.|..+
T Consensus 117 v~L~C~~--~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 117 VTLQCGS--RLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI 180 (196)
T ss_dssp CEEEEEE--SSCC-SEEEEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred EEEEEEc--CCCC-CEEEEEccCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence 9999998 6777 8999999998775322111111 11246899999999999999999999765
|
| >3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.4e-20 Score=179.92 Aligned_cols=186 Identities=19% Similarity=0.316 Sum_probs=136.6
Q ss_pred CeEEecCCCCceecCCCcEEEEEE-EecCCCCC-ceEEEEECCEecC--CCCceEEEecCcEEEEEEcccccCCCeEEEE
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQ-VEPKNDPN-LKIEWIFNGKPLE--LGSRFKTTADFGFVTLDLTEVYDRDQGIYTC 141 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~-~~~~~~p~-~~v~W~k~g~~i~--~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 141 (805)
|.|....+..+.+.+|+.++|.|. +. +.|. +.|.|+|++..+. ...+..+...++ +|.|.+++.+|+|.|+|
T Consensus 8 ~~~~~~~~~~~~v~~G~~v~L~C~~~~--~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C 83 (201)
T 3s97_C 8 DPFPPEERPEVRVKEGKGMVLLCDPPY--HFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG--NLYIANVEASDKGNYSC 83 (201)
T ss_dssp CCCCSSCCCCEEEETTCCEEECCCCCS--EESSCCEEEEEESSTTCBCCCSSSEEECTTTC--CEEESSCCGGGCEEEEE
T ss_pred CccCcCCCceEEEECCCCEEEeccccc--cCCCceEEEEEECCceeeeeeCCCeEEEcCCC--eEEECcCCcccCeEEEE
Confidence 555556666789999999999999 66 5677 8999999998775 233333333333 79999999999999999
Q ss_pred EEEeCCeeEEE---EEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCC
Q psy2166 142 RAWNLAGETFT---STTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEG 218 (805)
Q Consensus 142 ~a~n~~g~~~~---~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g 218 (805)
.+.+..+.... ...+.+..... ....+|.+...+.. ..+.+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~p~~~~~~~~-~~~~~g 128 (201)
T 3s97_C 84 FVSSPSITKSVFSKFIPLIPIPERT----------------------------------TKPYPADIVVQFKD-VYALMG 128 (201)
T ss_dssp EEEEGGGTEEEECCCEEEEEECCSS----------------------------------CCCEEEEEEEECCC-EEEETT
T ss_pred EEEecCCCcchhhcccceeeccccc----------------------------------cCCCCCceEecCCc-eEEecC
Confidence 99997654433 22233321110 01134556655543 357899
Q ss_pred ceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEe
Q psy2166 219 EIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 296 (805)
Q Consensus 219 ~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~ 296 (805)
+.++|.|.+ .+.|.+.+.|++++..+.....+ .. ....|.|.+++.+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 129 ~~~~l~C~~--~g~p~p~v~W~~~~~~~~~~~~~--~~--~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 129 QNVTLECFA--LGNPVPDIRWRKVLEPMPSTAEI--ST--SGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200 (201)
T ss_dssp CCEEEEEEE--EEESCCEEEEEETTBCCCTTCEE--ET--TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CcEEEEEEc--cCCCCCceEEEeCCCcCCCceee--cC--CCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence 999999998 57788999999999987755322 11 23479999999999999999999999999888888774
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-19 Score=168.66 Aligned_cols=167 Identities=16% Similarity=0.199 Sum_probs=121.8
Q ss_pred CcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCce-EEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEE
Q psy2166 62 TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLK-IEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYT 140 (805)
Q Consensus 62 ~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~-v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 140 (805)
..++|.+...+. ...+.+|+.++|.|.+. +.|.+. +.|+|+|..+.... .+|.|.+++.+|+|.|+
T Consensus 4 ~~~~p~i~~~p~-~~~v~~G~~v~L~C~~~--~~p~~~~~~W~~~~~~~~~~~----------~~L~i~~~~~~d~G~Y~ 70 (175)
T 1fnl_A 4 DLPKAVVFLEPQ-WYSVLEKDSVTLKCQGA--YSPEDNSTQWFHNESLISSQA----------SSYFIDAATVNDSGEYR 70 (175)
T ss_dssp CCCCCEEEEESC-CSEEETTCCEEEEEECC--CBTTBCCCEEEETTEEEESSC----------SEEEESSCCGGGCEEEE
T ss_pred CCCCCEEEEcCC-ceeeeCCCcEEEEeeCC--CCCCCcceEEEECCEEccCCc----------eEEEEeCCCcccCEEEE
Confidence 345677776665 56899999999999998 556555 88999998876432 27999999999999999
Q ss_pred EEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCce
Q psy2166 141 CRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEI 220 (805)
Q Consensus 141 C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~ 220 (805)
|.+.|..+ .....|.|..++ .+... .. ..+.+|+.
T Consensus 71 C~~~n~~~--s~~~~l~V~~~~-----------------------------------------~~~~~-~~-~~~~~g~~ 105 (175)
T 1fnl_A 71 CQTNLSTL--SDPVQLEVHIGW-----------------------------------------LLLQA-PR-WVFKEEDP 105 (175)
T ss_dssp EECSSSCC--CCCEEEEEECSS-----------------------------------------EEEEC-SC-SEEETTCC
T ss_pred EEeeCCcc--cccEEEEEeCCC-----------------------------------------ceeeC-CC-ceecCCCC
Confidence 99988544 334556664221 11111 11 23679999
Q ss_pred EEEEEEEeeCCC-CCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCee-EEEEEEEEEe
Q psy2166 221 AHFEASLIPVGD-QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ-AEISVNLECV 296 (805)
Q Consensus 221 ~~l~C~~~~~~~-p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~-~~~~~~l~v~ 296 (805)
++|.|.+ .+. |.+.+.|+|+|..+... .....|.|.+++.+|+|.|+|.|.|..+. .+..+.|.|.
T Consensus 106 ~~l~C~~--~~~~~~~~~~W~k~g~~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~ 173 (175)
T 1fnl_A 106 IHLRCHS--WKNTALHKVTYLQNGKDRKYF--------HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT 173 (175)
T ss_dssp EEEEEEE--CTTCCCEEEEEEETTEEEEEE--------EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred EEEEEEc--CCCCCceEEEEEECCeEccCC--------CCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEe
Confidence 9999988 444 45699999999987321 12247999999999999999999997654 3455666654
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.2e-20 Score=185.04 Aligned_cols=184 Identities=16% Similarity=0.157 Sum_probs=127.9
Q ss_pred ecCCCCceecCCCcEEEEEEEecC-CCCCceEEEEECCEecC------------------------------CCCceEEE
Q psy2166 70 VPLKPEFKLGEAQPLHLEAQVEPK-NDPNLKIEWIFNGKPLE------------------------------LGSRFKTT 118 (805)
Q Consensus 70 ~~~~~~~~v~~G~~v~L~C~~~~~-~~p~~~v~W~k~g~~i~------------------------------~~~~~~~~ 118 (805)
..++..+.+.+|+.++|.|.+.+. ..|.+.|.|+|++.... ...|+.+.
T Consensus 6 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 85 (250)
T 2fbo_J 6 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVA 85 (250)
T ss_dssp ECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECS
T ss_pred EcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEec
Confidence 344447899999999999999842 27788999999875431 12233333
Q ss_pred ecCcEEEEEEcccccCCCeEEEEEEEeCCee-----EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCC
Q psy2166 119 ADFGFVTLDLTEVYDRDQGIYTCRAWNLAGE-----TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAG 193 (805)
Q Consensus 119 ~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~-----~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 193 (805)
.+ +..+|.|.+++.+|+|.|+|.+.+..+. ......|.|..++
T Consensus 86 ~~-~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~------------------------------- 133 (250)
T 2fbo_J 86 NL-AAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHT------------------------------- 133 (250)
T ss_dssp CT-TSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTS-------------------------------
T ss_pred cC-CcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccC-------------------------------
Confidence 32 2347999999999999999999997654 2456677775431
Q ss_pred CCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcE--EEE----------------
Q psy2166 194 VPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI--RTV---------------- 255 (805)
Q Consensus 194 ~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~--~~~---------------- 255 (805)
.+|.+.........+.+|+.+.|.|.+ .+.|.|.+.|+|++..+...... ...
T Consensus 134 -------~~~~~~~~~~~~~~v~~g~~v~L~C~~--~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (250)
T 2fbo_J 134 -------PSNNVHVSTAEVVQVDEGNDITMTCPC--TDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIA 204 (250)
T ss_dssp -------CCSCCEECCCSEEECCTTCCEEECCCE--ESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTT
T ss_pred -------CCCeEEEecCceEEecCCCcEEEEEEe--cCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEe
Confidence 233333333333357789999999998 67788899999999887653211 000
Q ss_pred ---EEcCeEEEEEcCCCCcccEEEEEEEEcCC---eeEEEEEEEE
Q psy2166 256 ---HAFGMVVLEILGTKIEDTGVYTCRATNKW---GQAEISVNLE 294 (805)
Q Consensus 256 ---~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~---g~~~~~~~l~ 294 (805)
...+...|.|.+++.+|+|.|+|.|.|.. +....++.|.
T Consensus 205 ~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l~ 249 (250)
T 2fbo_J 205 GRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILK 249 (250)
T ss_dssp TSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEEEE
T ss_pred cccccCCccEEEEecCCcccCEEEEEEecCCccccCccceeEEEe
Confidence 01122589999999999999999999944 4555555543
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G | Back alignment and structure |
|---|
Probab=99.82 E-value=7.9e-21 Score=184.54 Aligned_cols=129 Identities=19% Similarity=0.209 Sum_probs=97.7
Q ss_pred EEEeccCCCCCcEEEEEEEEeCCcce--EEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccC
Q psy2166 628 ILDILYCYEENSGVYECRATNKYGSD--VTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLS 705 (805)
Q Consensus 628 ~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~ 705 (805)
.|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|..+ |.+...+... .+.
T Consensus 69 ~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~---------------------------p~~~~~~~~~-~~~ 120 (209)
T 1nbq_A 69 GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVP---------------------------PSKPTVNIPS-SAT 120 (209)
T ss_dssp EEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBC---------------------------CCCCCCCCBS-EEE
T ss_pred EEEEeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecC---------------------------CcCCCccccc-cee
Confidence 39999999999999999999997643 44667777653 3333333344 688
Q ss_pred CCCeEEEEEEE-eecCCCCeEEEEEECCEEccCCCCe-------EEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEE
Q psy2166 706 EGEIAHFEASL-IPVGDQTMTVEFLYNGKPIEASHRI-------RTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 777 (805)
Q Consensus 706 ~G~~~~l~C~~-~~~g~p~~~v~W~~~g~~l~~~~~~-------~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~ 777 (805)
+|+.+.|.|.+ . |.|.|.|.|+|+|..+....+. ..........|.|.++..+|+|.|+|.|.|..|...
T Consensus 121 ~g~~~~l~C~~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 198 (209)
T 1nbq_A 121 IGNRAVLTCSEQD--GSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPM 198 (209)
T ss_dssp TTSCEEECCCCCS--CBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCE
T ss_pred cCCEEEEEEeCCC--CCCCceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCccc
Confidence 99999999997 6 9999999999999988765432 011111223799999999999999999999999986
Q ss_pred EEEEEEEEE
Q psy2166 778 ISVNLECVV 786 (805)
Q Consensus 778 ~~~~l~V~~ 786 (805)
.+..+.|.+
T Consensus 199 ~s~~v~l~V 207 (209)
T 1nbq_A 199 TSNAVRMEA 207 (209)
T ss_dssp ECCCBCCEE
T ss_pred ccccEEEEE
Confidence 555555443
|
| >3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.3e-19 Score=171.44 Aligned_cols=171 Identities=15% Similarity=0.166 Sum_probs=128.4
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecC-------------------CCCceEEEecCcEEEEEEcccccCC
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLE-------------------LGSRFKTTADFGFVTLDLTEVYDRD 135 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~-------------------~~~~~~~~~~~~~~~L~I~~~~~~D 135 (805)
...+.+|+.++|.|... +.+.+.|.|+|++.... ...|+.+..++ +|.|.+++.+|
T Consensus 8 ~~~v~~G~~v~L~C~~~--~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~---~L~i~~v~~~D 82 (208)
T 3r4d_A 8 PPQVAEDNNVLLLVHNL--PLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG---SLLFQMITMKD 82 (208)
T ss_dssp SSEEETTCCEEEEEECC--CSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTS---CEEECSCCGGG
T ss_pred cceeecCCcEEEEEeCC--CCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCC---eEEEccccccC
Confidence 35789999999999966 67888999999754222 12344444333 69999999999
Q ss_pred CeEEEEEEEeCC-eeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccc
Q psy2166 136 QGIYTCRAWNLA-GETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSN 214 (805)
Q Consensus 136 ~G~Y~C~a~n~~-g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 214 (805)
+|.|+|.+.+.. +.......|.|..++ ..|.+......
T Consensus 83 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~--------------------------------------~~p~i~~~~~~--- 121 (208)
T 3r4d_A 83 MGVYTLDMTDENYRRTQATVRFHVHQPV--------------------------------------TQPFLQVTNTT--- 121 (208)
T ss_dssp CEEEEEEEECSSCEEEEEEEEEEEECCC--------------------------------------CCCEEEESCSS---
T ss_pred CeEEEEEEEcccCceeEEEEEEEeccCC--------------------------------------CCCEEecCCce---
Confidence 999999999984 556666777776432 22444433322
Q ss_pred cCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEE-EEEEE
Q psy2166 215 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE-ISVNL 293 (805)
Q Consensus 215 v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~-~~~~l 293 (805)
+.+|+.+.|.|.+ .+.| +.+.|+++|..+....++.....+ ..|.|.+++.+|+|.|+|.|.|..|... ..++|
T Consensus 122 ~~~g~~v~l~C~~--~~~p-p~i~W~~~g~~l~~~~~~~~~~~~--~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l 196 (208)
T 3r4d_A 122 VKELDSVTLTCLS--NDIG-ANIQWLFNSQSLQLTERMTLSQNN--SILRIDPIKREDAGEYQCEISNPVSVRRSNSIKL 196 (208)
T ss_dssp CCTTCCEEEEEEC--SCTT-CEEEEEETTEECCCCSSEEEETTT--TEEEESSCCGGGCEEEEEEEECTTCCEECCCEEE
T ss_pred EeeCCCEEEEEEC--CCCC-CceEEEECCEeCCCCCCeEEcCCC--CEEEEeccCHHhCeEEEEEEecCCCcccCCceee
Confidence 7899999999998 5655 799999999999877776544333 4799999999999999999999998764 34555
Q ss_pred EEe
Q psy2166 294 ECV 296 (805)
Q Consensus 294 ~v~ 296 (805)
.|.
T Consensus 197 ~v~ 199 (208)
T 3r4d_A 197 DII 199 (208)
T ss_dssp CCC
T ss_pred eEE
Confidence 554
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A | Back alignment and structure |
|---|
Probab=99.82 E-value=5e-19 Score=170.13 Aligned_cols=174 Identities=13% Similarity=0.143 Sum_probs=124.1
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEECC-EEccCCCceEEEEeCcEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEE
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFHNG-KPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~g-~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 394 (805)
+.+|+.++|.|.+. |.|.+.|.|+++. ..+. .. ....+....|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus 13 ~~~G~~v~L~C~~~--g~P~p~i~W~~~~~~~~~--~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l 86 (202)
T 1vca_A 13 AQIGDSVSLTCSTT--GCESPFFSWRTQIDSPLN--GK--VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV 86 (202)
T ss_dssp EETTSCEEEEEEEE--SCSSCEEEEEETTCCCCS--SE--EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred EcCCCcEEEEEeec--CCCCCeEEEECCCCCCcc--ce--EEEcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEE
Confidence 55899999999998 7899999999842 2221 11 2223345579999999999999999999999888777888
Q ss_pred EEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEe
Q psy2166 395 KCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELF 474 (805)
Q Consensus 395 ~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 474 (805)
.|..+|.
T Consensus 87 ~V~~~p~------------------------------------------------------------------------- 93 (202)
T 1vca_A 87 EIYSFPK------------------------------------------------------------------------- 93 (202)
T ss_dssp EEEBCCS-------------------------------------------------------------------------
T ss_pred EEEeCCC-------------------------------------------------------------------------
Confidence 8764321
Q ss_pred ecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCC--cEEEEEECCEEccCCCceEE----E
Q psy2166 475 SNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPD--LVVEWFYNGKKLPHGHRYRT----F 548 (805)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~--~~v~W~~~g~~l~~~~~~~~----~ 548 (805)
.+..... ..+.+|+.++|.|.+.+ +.|. +.|+|+|+|..|........ .
T Consensus 94 ----------------------~~~~~~~--~~~~~G~~~~L~C~~~~-~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~ 148 (202)
T 1vca_A 94 ----------------------DPEIHLS--GPLEAGKPITVKCSVAD-VYPFDRLEIDLLKGDHLMKSQEFLEDADRKS 148 (202)
T ss_dssp ----------------------CCEEEES--SCEETTSCEEEEEEEEE-EBSGGGEEEEEEETTEEEEEEECCSCCSSCC
T ss_pred ----------------------CCEeCCc--eEEcCCCCEEEEEEECC-cCCCCCeEEEEEeCCeECcccccccccCcCc
Confidence 1111222 23889999999999995 3343 58999999998853210000 0
Q ss_pred eeCCEEEEEEccCCCCCCEEEEEEEEcCCcc-------eEEEEEEEEeeeee
Q psy2166 549 HDFGIVILDILYCYEENSGVYECRATNKYGS-------DVTKASLKCVSKTN 593 (805)
Q Consensus 549 ~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~-------~~~~~~l~V~~~~~ 593 (805)
.......|.|.....+|.|.|+|.|.|..|. ...+..|.|..+|.
T Consensus 149 ~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~ 200 (202)
T 1vca_A 149 LETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK 200 (202)
T ss_dssp CEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred ceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence 0112445788888888999999999998876 35677888887764
|
| >3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=175.00 Aligned_cols=178 Identities=13% Similarity=0.193 Sum_probs=129.6
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec------------CCCCceEEEecCcEEEEEEcccccCCCeEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQGIYT 140 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 140 (805)
.+.+.+|+.++|.|.+. +.+.+.|.|+|. +... ....|+.+...++..+|.|.+++.+|+|.|+
T Consensus 9 ~~~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 86 (213)
T 3mj8_L 9 LVSVALGQKATITCSGD--KLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYY 86 (213)
T ss_dssp EEEEETTSCEEEEEECS--STTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred cEEEeCCCCEEEEEEcC--CCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEE
Confidence 67899999999999998 688899999992 2211 1345788777777889999999999999999
Q ss_pred EEEEeCCe---eEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCC
Q psy2166 141 CRAWNLAG---ETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 217 (805)
Q Consensus 141 C~a~n~~g---~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~ 217 (805)
|.|.+..+ .......|.|...+ ..+|.+...+.... +.+
T Consensus 87 C~~~~~~~~~~~~~~~~~l~V~~~~-------------------------------------~~~P~i~~~~~~~~-~~~ 128 (213)
T 3mj8_L 87 CQSWDGTNSAWVFGSGTKVTVLGQP-------------------------------------NAAPSVTLFPPSSE-ELK 128 (213)
T ss_dssp EEEEETTTTEEEEBCCEEEEEECSC-------------------------------------CBCCEEEEECCCHH-HHT
T ss_pred EEeccCCcceeEEcCceEEEEeCCC-------------------------------------CCCCeEEccCCCcc-ccc
Confidence 99999876 33445667775321 13466665554443 448
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEE-EEEcC----eEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEE
Q psy2166 218 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT-VHAFG----MVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 292 (805)
Q Consensus 218 g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~-~~~~~----~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~ 292 (805)
|+.++|.|.+.....+.+.+.|+|+|..+........ ...++ ...|.|.++..+|+|.|+|.|.|..+....++.
T Consensus 129 g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~ 208 (213)
T 3mj8_L 129 TNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLS 208 (213)
T ss_dssp TTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEEC
T ss_pred CCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeec
Confidence 9999999998532233359999999999865321100 01222 246999999999999999999999876665543
|
| >1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=170.09 Aligned_cols=168 Identities=14% Similarity=0.169 Sum_probs=121.9
Q ss_pred cCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCc-eEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEE
Q psy2166 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNL-KIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTC 141 (805)
Q Consensus 63 ~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 141 (805)
.++|.+...+. .+.+.+|+.++|.|.+. +.+.+ .+.|+|++..+.... .+|.|.+++.+|+|.|+|
T Consensus 2 ~~~P~i~~~p~-~~~v~~G~~v~L~C~~~--~~~~~~~i~W~~~~~~~~~~~----------~~L~i~~v~~~d~G~Y~C 68 (176)
T 1f2q_A 2 PQKPKVSLNPP-WNRIFKGENVTLTCNGN--NFFEVSSTKWFHNGSLSEETN----------SSLNIVNAKFEDSGEYKC 68 (176)
T ss_dssp --CCCCEEESS-CSEEETTCCEEEECCTT--CC----CCEEEETTEECSCCS----------SEEEECSCCGGGCEEEEE
T ss_pred CCCCEEEcCCC-CcceecCCcEEEEEeCC--CCCCcceEEEEECCeECCCCc----------eEEEEeccceecCEEEEE
Confidence 35677776665 57899999999999998 45553 699999999887532 279999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceE
Q psy2166 142 RAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIA 221 (805)
Q Consensus 142 ~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~ 221 (805)
.+.|..+.. ...|.|... +.+...+ . ..+.+|+.+
T Consensus 69 ~~~~~~~s~--~~~l~V~~~-----------------------------------------~~~~~~~-~-~~~~~g~~~ 103 (176)
T 1f2q_A 69 QHQQVNESE--PVYLEVFSD-----------------------------------------WLLLQAS-A-EVVMEGQPL 103 (176)
T ss_dssp ECTTSSCCC--CEEEEEECS-----------------------------------------SEEEEES-C-SEEETTSCE
T ss_pred EcCCccccc--cEEEEEeCc-----------------------------------------ceeecCC-c-ceeeCCCCE
Confidence 998865433 445555421 1111111 1 136799999
Q ss_pred EEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCee-EEEEEEEEEec
Q psy2166 222 HFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ-AEISVNLECVD 297 (805)
Q Consensus 222 ~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~-~~~~~~l~v~~ 297 (805)
.|.|.+. .+.|.+.+.|+|+|..+.... ....|.|.+++.+|+|.|+|.|.|..+. .+..+.|.|..
T Consensus 104 ~l~C~~~-~~~p~~~~~W~~~g~~~~~~~--------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 171 (176)
T 1f2q_A 104 FLRCHGW-RNWDVYKVIYYKDGEALKYWY--------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIK 171 (176)
T ss_dssp EEEEEEG-GGCCEEEEEEEETTEECCSCC--------CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred EEEEEec-CCCCceEEEEEECCEEEeeec--------CCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEec
Confidence 9999883 356778999999999885332 1247999999999999999999996443 34557777764
|
| >2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=181.76 Aligned_cols=79 Identities=18% Similarity=0.139 Sum_probs=61.7
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCe----------------------EEEeeCcEEEEEEcCCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI----------------------RTVHAFGMVVLEILGTKIE 760 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~----------------------~~~~~~~~~~L~i~~v~~~ 760 (805)
.+.+|+.+.|.|.+. |.|.|.|+|+|++..+...... ...... ...|.|.+++.+
T Consensus 147 ~v~~g~~v~L~C~~~--g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~i~~v~~~ 223 (250)
T 2fbo_J 147 QVDEGNDITMTCPCT--DCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSG-ARNLVIRAAKIT 223 (250)
T ss_dssp ECCTTCCEEECCCEE--SCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEET-TTEEEECSCCGG
T ss_pred EecCCCcEEEEEEec--CCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCC-ccEEEEecCCcc
Confidence 788999999999999 9899999999999987653211 111111 137999999999
Q ss_pred CCEEEEEEEEc---CCccEEEEEEEEE
Q psy2166 761 DTGVYTCRATN---KWGQAEISVNLEC 784 (805)
Q Consensus 761 d~G~Y~C~a~N---~~G~~~~~~~l~V 784 (805)
|+|.|+|.|.| .+|....++.|.|
T Consensus 224 D~G~Y~C~a~N~~g~~g~~~~~~~l~V 250 (250)
T 2fbo_J 224 DAGRVWCELATGQGELDADRSSTILKV 250 (250)
T ss_dssp GCEEEEEEEESSSSGGGEEEEEEEEEC
T ss_pred cCEEEEEEecCCccccCccceeEEEeC
Confidence 99999999999 5666777666654
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-19 Score=170.94 Aligned_cols=173 Identities=10% Similarity=0.081 Sum_probs=117.1
Q ss_pred cCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCce-EEEecCcEEEEEEcccccCCCeEEEE
Q psy2166 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRF-KTTADFGFVTLDLTEVYDRDQGIYTC 141 (805)
Q Consensus 63 ~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~-~~~~~~~~~~L~I~~~~~~D~G~Y~C 141 (805)
+++|.|...+. ..+.+|++++|.|.+. +.|. .|.|+|+|..+....+. ..... ...|.|.+++.+|+|.|+|
T Consensus 3 ~~~P~i~~~p~--~~v~~G~~v~L~C~~~--~~~~-~~~W~k~g~~~~~~~~~~~~~~~--~~~L~i~~v~~~D~G~Y~C 75 (198)
T 1ugn_A 3 LPKPTLWAEPG--SVITQGSPVTLRCQGG--QETQ-EYRLYREKKTAPWITRIPQELVK--KGQFPIPSITWEHTGRYRC 75 (198)
T ss_dssp CCCCEEEEESC--SEEETTCCEEEEEECC--TTCC-CEEEEESSSCCHHHHTSCHHHHT--TTEEEESSCCGGGCEEEEE
T ss_pred CCCCeEeccCC--CcccCCCcEEEEEEec--CCCc-EEEEEECCccccccccccccCCc--ccEEEECCCCHHHCeEEEE
Confidence 56788876654 4889999999999998 4554 69999999877421110 00111 2279999999999999999
Q ss_pred EEEeCC-ee--EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCC
Q psy2166 142 RAWNLA-GE--TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEG 218 (805)
Q Consensus 142 ~a~n~~-g~--~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g 218 (805)
.|.|.. |. ......|.|...+ .+|.+...+. ..+.+|
T Consensus 76 ~a~n~~~g~~~~s~~~~l~V~~~~--------------------------------------~~p~i~~~~~--~~v~~G 115 (198)
T 1ugn_A 76 YYGSDTAGRSESSDPLELVVTGAY--------------------------------------IKPTLSAQPS--PVVNSG 115 (198)
T ss_dssp EEEETTTEECCCCCCEEEEEECSS--------------------------------------CCCEEEEESC--SEEETT
T ss_pred EEECCCCCcccCCccEEEEEcccc--------------------------------------cCCccccCCc--cccCCC
Confidence 999987 53 2345666665421 2344443322 247799
Q ss_pred ceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcE-EEEE-EcCeEEEEEcCCCCcccEEEEEEEEcCCe
Q psy2166 219 EIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI-RTVH-AFGMVVLEILGTKIEDTGVYTCRATNKWG 285 (805)
Q Consensus 219 ~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~-~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 285 (805)
+.++|.|.+ .+. .+.+.|+|+|..+...... .... ......|.|.+++.+|+|.|+|.|.|..+
T Consensus 116 ~~v~L~C~~--~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~ 181 (198)
T 1ugn_A 116 GNVTLQCDS--QVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNS 181 (198)
T ss_dssp CCEEEEEEC--SSC-CSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred CcEEEEEec--CCC-CcEEEEEECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCC
Confidence 999999988 555 6799999999887543221 1111 12357899999999999999999999764
|
| >3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=177.27 Aligned_cols=174 Identities=18% Similarity=0.275 Sum_probs=129.5
Q ss_pred CCceecCCCcEEEEEEEecCCCC----CceEEEEE----------------CCEecCC-----CCceEEEe---cCcEEE
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDP----NLKIEWIF----------------NGKPLEL-----GSRFKTTA---DFGFVT 125 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p----~~~v~W~k----------------~g~~i~~-----~~~~~~~~---~~~~~~ 125 (805)
..+.+.+|+.++|.|.+.+ .+ .+.|.|+| ++..+.. ..|+.+.. ..+..+
T Consensus 8 ~~v~v~~G~~v~L~C~~~~--~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 85 (214)
T 3jz7_A 8 QRIEKAKGETAYLPCKFTL--SPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDAS 85 (214)
T ss_dssp EEEEEETTSCEEECCBCCC--CTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCC
T ss_pred ceEEEecCCCEEEEEEEec--CCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCccc
Confidence 3578999999999999984 44 57999998 5554432 44665543 223457
Q ss_pred EEEcccccCCCeEEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCce
Q psy2166 126 LDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQF 205 (805)
Q Consensus 126 L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 205 (805)
|.|.+++.+|+|.|+|.+.|..|.......|.|..++.+
T Consensus 86 L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~----------------------------------------- 124 (214)
T 3jz7_A 86 INVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSG----------------------------------------- 124 (214)
T ss_dssp EEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBS-----------------------------------------
T ss_pred EEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCC-----------------------------------------
Confidence 999999999999999999999988888888888754322
Q ss_pred ecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECC--EEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcC
Q psy2166 206 TSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG--KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNK 283 (805)
Q Consensus 206 ~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g--~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~ 283 (805)
...+... .+.+|+.++|.|.+. .+.|.+.+.|++++ ..+...... ......|.|.+++.+|+|.|+|.|.|.
T Consensus 125 ~~~~~~~-~~~~g~~v~l~C~~~-~g~p~~~v~W~~~~~~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y~C~a~N~ 198 (214)
T 3jz7_A 125 TRCFVDG-SEEIGNDFKLKCEPK-EGSLPLQFEWQKLSDSQTMPTPWLA----EMTSPVISVKNASSEYSGTYSCTVQNR 198 (214)
T ss_dssp CEEEEES-CCBTTCCEEEEEECS-BCCSSCEEEEEECSTTCCCCGGGGG----GTTSSEEEECSCCGGGCEEEEEEEECS
T ss_pred ceeeeec-ceecCCcEEEEecCC-CCCCCCEEEEEECCCCCccCcccee----ccCCCEEEEecCCHHHCEEEEEEEEcC
Confidence 1111111 267899999999874 48888999999954 333322111 111237999999999999999999999
Q ss_pred CeeEEEEEEEEEe
Q psy2166 284 WGQAEISVNLECV 296 (805)
Q Consensus 284 ~g~~~~~~~l~v~ 296 (805)
.|..+..+.|.|.
T Consensus 199 ~g~~~~~~~l~V~ 211 (214)
T 3jz7_A 199 VGSDQCMLRLDVV 211 (214)
T ss_dssp SCEEEEEEEECCB
T ss_pred CCcEEEEEEEEEe
Confidence 9999888888775
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=176.82 Aligned_cols=171 Identities=9% Similarity=0.026 Sum_probs=121.6
Q ss_pred CcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEE--EEEEcccccCCCeEE
Q psy2166 62 TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV--TLDLTEVYDRDQGIY 139 (805)
Q Consensus 62 ~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y 139 (805)
...+|.+...+. ..+.+|++++|.|.+. + +.+.|.|+|||..+....+ ......... .|.|.+++.+|+|.|
T Consensus 6 ~~~~P~i~~~p~--~~v~~G~~vtL~C~~~--~-~~~~~~W~k~g~~~~~~~~-~~~~~~~~~~~~L~I~~v~~~D~G~Y 79 (218)
T 1uct_A 6 DFPMPFISAKSS--PVIPLDGSVKIQCQAI--R-EAYLTQLMIIKNSTYREIG-RRLKFWNETDPEFVIDHMDANKAGRY 79 (218)
T ss_dssp GSCCCCEEESSC--SEEETTCCEEEEECCC--T-TCSEEEEEEEETTEEEECS-EECC----CCCEEEECSCCGGGCEEE
T ss_pred CCCCCEEEecCC--CccCCCCCEEEEEEcC--C-CCCEEEEEECCCccccccc-ccCCCCcceeeEEEEcccccccCEEE
Confidence 456788877664 4789999999999987 3 5789999999876543222 111111223 799999999999999
Q ss_pred EEEEEeCCeeEE--EEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCC
Q psy2166 140 TCRAWNLAGETF--TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 217 (805)
Q Consensus 140 ~C~a~n~~g~~~--~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~ 217 (805)
+|.+.|..|... ....|.|.... .+|.+...+.. .+.+
T Consensus 80 ~C~a~n~~~~~~~s~~~~l~V~~~~--------------------------------------~~P~i~~~p~~--~v~~ 119 (218)
T 1uct_A 80 QCQYRIGHYRFRYSDTLELVVTGLY--------------------------------------GKPFLSADRGL--VLMP 119 (218)
T ss_dssp EEEEEETTTEEEECCCEEEEEECSS--------------------------------------CCCEEEESSCS--EECT
T ss_pred EEEEEcCCCceeecCCEEEEEcCcc--------------------------------------cCCEEEeCCCC--ccCC
Confidence 999999765333 23455554311 23555544422 4789
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCC
Q psy2166 218 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKW 284 (805)
Q Consensus 218 g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 284 (805)
|+.++|.|.. .+.|.+.+.|+|+|..+... . ........|.|.+++.+|+|.|+|.|.|..
T Consensus 120 G~~v~L~C~~--~~~~~~~~~W~k~g~~~~~~--~--~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 180 (218)
T 1uct_A 120 GENISLTCSS--AHIPFDRFSLAKEGELSLPQ--H--QSGEHPANFSLGPVDLNVSGIYRCYGWYNR 180 (218)
T ss_dssp TCCCEEEEEC--SSSCCSEEEEEETTCSSCCS--E--EECSSSEEEECCSCCGGGCEEEEEEEECTT
T ss_pred CCCEEEEEeC--CCCCCCEEEEEECCCccccc--c--cCCCccCEEEEccCCcccCEEEEEEEEcCC
Confidence 9999999965 46677899999999877542 1 122345689999999999999999999853
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=169.69 Aligned_cols=137 Identities=13% Similarity=0.228 Sum_probs=108.1
Q ss_pred CCCeEEEEECCEEcc----------CCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcce--EEEEEEEEeeccc
Q psy2166 599 QLPEVEWFYNGKKLP----------HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD--VTKASLKCVSKTN 666 (805)
Q Consensus 599 ~~p~v~W~~~g~~l~----------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~p~ 666 (805)
+.|.|.|+|++..+. ...++.+..++. |.|.+++.+|+|.|+|.|.|..|.. ...+.|.|..++
T Consensus 26 ~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gs---L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~- 101 (176)
T 1hng_A 26 DIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD---LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMV- 101 (176)
T ss_dssp TEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSC---EEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCC-
T ss_pred ccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCc---EEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCC-
Confidence 356899999997652 345666644443 9999999999999999999999987 667788887532
Q ss_pred cccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEee
Q psy2166 667 LILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA 746 (805)
Q Consensus 667 ~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~ 746 (805)
.+|.+.. .+..+.|.|.+. |.|.|.|+|+|+|+.+..+.+
T Consensus 102 -----------------------~~p~i~~---------~~~~v~L~C~~~--g~p~p~i~W~~~g~~l~~~~~------ 141 (176)
T 1hng_A 102 -----------------------SKPMIYW---------ECSNATLTCEVL--EGTDVELKLYQGKEHLRSLRQ------ 141 (176)
T ss_dssp -----------------------CCCEEEE---------ETTTTEEEEECS--SCSSCEEEEEETTEEEEEESS------
T ss_pred -----------------------CCCEEEe---------cCCcEEEEEEec--CCCCcEEEEEECCEECCCCCc------
Confidence 3455442 234589999998 999999999999998876544
Q ss_pred CcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 747 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 747 ~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
+.|.++..+|+|.|+|.|.|.+|..+..+.|.|
T Consensus 142 -----~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~ 174 (176)
T 1hng_A 142 -----KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174 (176)
T ss_dssp -----SEEEEECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred -----EEEEEEEccCCeEEEEEEEecCCCceecccccC
Confidence 334467799999999999999999999887765
|
| >1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 | Back alignment and structure |
|---|
Probab=99.81 E-value=8.2e-20 Score=171.30 Aligned_cols=158 Identities=11% Similarity=0.149 Sum_probs=118.1
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecC----------CCCceEEEecCcEEEEEEcccccCCCeEEEEEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLE----------LGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAW 144 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~----------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 144 (805)
.+.+.+|+.++|.|.......+.+.|.|+|++..+. ...|+.+..++ +|.|.+++.+|+|.|+|.|.
T Consensus 5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~g---sL~I~~v~~~D~G~Y~C~~~ 81 (176)
T 1hng_A 5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG---DLKIKNLTRDDSGTYNVTVY 81 (176)
T ss_dssp EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTS---CEEESSCCGGGCEEEEEEEE
T ss_pred EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCC---cEEEcccccccCEEEEEEEE
Confidence 356789999999995432236677999999997552 45677775544 59999999999999999999
Q ss_pred eCCeeE--EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEE
Q psy2166 145 NLAGET--FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAH 222 (805)
Q Consensus 145 n~~g~~--~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~ 222 (805)
|..|.. .....|.|..+. ..|.+.. .+..++
T Consensus 82 n~~g~~~~~~~~~l~V~~~~--------------------------------------~~p~i~~---------~~~~v~ 114 (176)
T 1hng_A 82 STNGTRILNKALDLRILEMV--------------------------------------SKPMIYW---------ECSNAT 114 (176)
T ss_dssp ETTCCEEEEEEEEEEEECCC--------------------------------------CCCEEEE---------ETTTTE
T ss_pred eCCCCEEEEEEEEEEEeCCC--------------------------------------CCCEEEe---------cCCcEE
Confidence 998886 555666665421 2233322 234589
Q ss_pred EEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEE
Q psy2166 223 FEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 295 (805)
Q Consensus 223 l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v 295 (805)
|.|.+ .+.|.|.|.|+|+|..+....+ +.|.+++.+|+|.|+|.|.|..|.......|.+
T Consensus 115 L~C~~--~g~p~p~i~W~~~g~~l~~~~~-----------~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~ 174 (176)
T 1hng_A 115 LTCEV--LEGTDVELKLYQGKEHLRSLRQ-----------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174 (176)
T ss_dssp EEEEC--SSCSSCEEEEEETTEEEEEESS-----------SEEEEECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred EEEEe--cCCCCcEEEEEECCEECCCCCc-----------EEEEEEEccCCeEEEEEEEecCCCceecccccC
Confidence 99988 7888899999999998765443 334466799999999999999998887766543
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-19 Score=171.36 Aligned_cols=169 Identities=13% Similarity=0.132 Sum_probs=119.8
Q ss_pred cCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEE
Q psy2166 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 63 ~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
+++|.+...+.. .+.+|++|+|.|.+. + +.+.+.|+|+|..+..... ..........|.|.+++.+|+|.|+|.
T Consensus 2 l~~P~i~~~p~~--~v~~G~~v~L~C~~~--~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 75 (188)
T 1oll_A 2 LPKPFIWAEPHF--MVPKEKQVTICCQGN--Y-GAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSCI 75 (188)
T ss_dssp CCCCEEEEESCS--EEETTCCEEEEEECC--T-TCCEEEEEETTEEEEEECC-SSCTTCCEEEEEESSCCGGGCEEEEEE
T ss_pred CCCCEEEeecCC--cCCCCCCEEEEEecC--C-CCCEEEEEECCCccccccc-ccCCCcceeEEEeCcCCcccCeEEEEE
Confidence 356777776653 799999999999987 3 4568999999987642110 001122345899999999999999999
Q ss_pred EEeCCeeE--EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCce
Q psy2166 143 AWNLAGET--FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEI 220 (805)
Q Consensus 143 a~n~~g~~--~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~ 220 (805)
+.|..+.. .....|.|.... .+|.+...+. . .+.+|+.
T Consensus 76 ~~~~~~~~~~s~~~~l~V~~~~--------------------------------------~~p~i~~~p~-~-~v~~G~~ 115 (188)
T 1oll_A 76 YRVGELWSEPSNLLDLVVTEMY--------------------------------------DTPTLSVHPG-P-EVISGEK 115 (188)
T ss_dssp EEETTEECCCCCCEEEEEESCS--------------------------------------CCCEEEEESC-S-EEETTCE
T ss_pred ecCCCCCCCCCCceEEEecccC--------------------------------------CCCeEEECCC-C-ccccCCE
Confidence 98875533 234556554311 2355554432 2 3789999
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCC
Q psy2166 221 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKW 284 (805)
Q Consensus 221 ~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 284 (805)
++|.|.+ .+ +.+.+.|+|+|..+.. ..........|.|.+++.+|+|.|+|.|.|..
T Consensus 116 v~L~C~~--~~-~~~~~~w~k~g~~~~~----~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 172 (188)
T 1oll_A 116 VTFYCRL--DT-ATSMFLLLKEGRSSHV----QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN 172 (188)
T ss_dssp EEEEEEC--SS-SCSEEEEEEESSSCEE----EEEECSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred EEEEEEc--CC-CCCEEEEEECCccccc----cccCCCceeEEEECCCCcCCCcEEEEEEEcCC
Confidence 9999986 44 4468999999976643 11223445789999999999999999998864
|
| >4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.1e-20 Score=178.94 Aligned_cols=131 Identities=13% Similarity=0.105 Sum_probs=99.3
Q ss_pred EEEeccCCCCCcEEEEEEEEeCCcceEEEE-EEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCC
Q psy2166 628 ILDILYCYEENSGVYECRATNKYGSDVTKA-SLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 706 (805)
Q Consensus 628 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~-~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~ 706 (805)
.|.|.+++.+|+|.|.|.+.|..+...... .+.+.. .++.+....... .+..
T Consensus 80 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~-~~~~ 132 (218)
T 4frw_A 80 SVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLV--------------------------PPLPSLNPGPAL-EEGQ 132 (218)
T ss_dssp CEEESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEB--------------------------CCCCEEEECSCE-ETTC
T ss_pred EEEEeeccHHHCCceeEEEEeccCceeeeEEEEEEee--------------------------eccceeeeeeee-eeee
Confidence 499999999999999999998776555443 344432 223333344445 7889
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEe-eCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH-AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
|+.+.|.|.+. |.|+|.|+|+|+|..+.......... ......|.|.++..+|+|.|+|.|.|.+|.....++|+|.
T Consensus 133 ~~~~~~~c~~~--g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~ 210 (218)
T 4frw_A 133 GLTLAASCTAE--GSPAPSVTWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH 210 (218)
T ss_dssp CSEEEEEEEEE--EBSCCEEEEEESSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred ccccceeeecc--CCcCceEEEEECCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence 99999999998 99999999999998776543322110 0113479999999999999999999999998888888887
Q ss_pred Ee
Q psy2166 786 VW 787 (805)
Q Consensus 786 ~~ 787 (805)
+.
T Consensus 211 V~ 212 (218)
T 4frw_A 211 VS 212 (218)
T ss_dssp EE
T ss_pred EC
Confidence 64
|
| >1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-18 Score=166.25 Aligned_cols=179 Identities=12% Similarity=0.110 Sum_probs=124.3
Q ss_pred EecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECC-EecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCC
Q psy2166 69 IVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG-KPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLA 147 (805)
Q Consensus 69 ~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g-~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 147 (805)
.+.++..+.+.+|+.++|.|.+. |.|.+.|.|+++. ..+. .+ ....+....|.|.+++.+|+|.|+|.|.|..
T Consensus 4 ~i~p~~~~~~~~G~~v~L~C~~~--g~P~p~i~W~~~~~~~~~--~~--~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 77 (202)
T 1vca_A 4 ETTPESRYLAQIGDSVSLTCSTT--GCESPFFSWRTQIDSPLN--GK--VTNEGTTSTLTMNPVSFGNEHSYLCTATCES 77 (202)
T ss_dssp EEESSSEEEEETTSCEEEEEEEE--SCSSCEEEEEETTCCCCS--SE--EEEETTEEEEEESSCCGGGCSEEEEEEEETT
T ss_pred EECCCCcEEEcCCCcEEEEEeec--CCCCCeEEEECCCCCCcc--ce--EEEcCCccEEEECcCCHHHCEEEEEEEEECC
Confidence 34444444556999999999998 6888899999943 2221 12 2223345579999999999999999999998
Q ss_pred eeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEE
Q psy2166 148 GETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASL 227 (805)
Q Consensus 148 g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~ 227 (805)
|.....+.|.|..++.. +.+. +. ..+.+|+.++|.|.+
T Consensus 78 ~~~~~~~~l~V~~~p~~--------------------------------------~~~~--~~--~~~~~G~~~~L~C~~ 115 (202)
T 1vca_A 78 RKLEKGIQVEIYSFPKD--------------------------------------PEIH--LS--GPLEAGKPITVKCSV 115 (202)
T ss_dssp EEEEEEEEEEEEBCCSC--------------------------------------CEEE--ES--SCEETTSCEEEEEEE
T ss_pred ceEeeEEEEEEEeCCCC--------------------------------------CEeC--Cc--eEEcCCCCEEEEEEE
Confidence 88877888888754321 1121 11 247899999999998
Q ss_pred eeCCCCC--eEEEEEECCEEccCCCcEEE----EEEcCeEEEEEcCCCCcccEEEEEEEEcCCee-------EEEEEEEE
Q psy2166 228 IPVGDQT--MTVEFLYNGKPIEASHRIRT----VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ-------AEISVNLE 294 (805)
Q Consensus 228 ~~~~~p~--~~i~W~k~g~~l~~~~~~~~----~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~-------~~~~~~l~ 294 (805)
.. +.|. ++|.|+|+|..|........ ........|.|.....+|+|.|+|.|.|..+. .+.++.|.
T Consensus 116 ~~-~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~ 194 (202)
T 1vca_A 116 AD-VYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQ 194 (202)
T ss_dssp EE-EBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECC
T ss_pred CC-cCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEE
Confidence 53 2343 68999999998753211000 00112356788888889999999999997664 34566676
Q ss_pred Ee
Q psy2166 295 CV 296 (805)
Q Consensus 295 v~ 296 (805)
|.
T Consensus 195 V~ 196 (202)
T 1vca_A 195 VY 196 (202)
T ss_dssp EE
T ss_pred Ee
Confidence 66
|
| >3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-19 Score=153.36 Aligned_cols=97 Identities=24% Similarity=0.323 Sum_probs=90.8
Q ss_pred CCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEE
Q psy2166 688 DGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTC 767 (805)
Q Consensus 688 ~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 767 (805)
...||.|...+.++ .+.+|+.+.|.|.+. |.|.|.|+|+|||+.|..+.++.+..+++..+|.|.++..+|+|.|+|
T Consensus 10 ~~~pP~f~~~p~~~-~v~~G~~~~l~C~~~--G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 86 (107)
T 3knb_B 10 QGSPPCFLRFPRPV-RVVSGAEAELKCVVL--GEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVC 86 (107)
T ss_dssp CCEEEEEEECCCCE-EEETTSCEEEEEEEE--EESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEE
T ss_pred CCCCCEEEeCCCcE-EEeCCCcEEEEEEEE--EecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEE
Confidence 34689999999999 999999999999999 999999999999999999999998888888999999999999999999
Q ss_pred EEEcCCccEEEEEEEEEEEe
Q psy2166 768 RATNKWGQAEISVNLECVVW 787 (805)
Q Consensus 768 ~a~N~~G~~~~~~~l~V~~~ 787 (805)
+|.|.+|..+.++.|+|+..
T Consensus 87 ~a~N~~G~~~~~~~l~V~~p 106 (107)
T 3knb_B 87 RARNAAGEAYAAAAVTVLEP 106 (107)
T ss_dssp EEEETTEEEEEEEEEEEEC-
T ss_pred EEEECCCEEEEEEEEEEEcC
Confidence 99999999999999999753
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A | Back alignment and structure |
|---|
Probab=99.80 E-value=9.6e-19 Score=163.51 Aligned_cols=165 Identities=18% Similarity=0.231 Sum_probs=120.1
Q ss_pred CCCeEEecCCCCceecCCCcEEEEEEEecCCCC-CceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEE
Q psy2166 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDP-NLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 64 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p-~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
++|.+...+. ...+.+|+.++|.|.+. +.| .+.+.|+|+|..+..+.+ .|.|.+++.+|+|.|+|.
T Consensus 3 p~p~i~~~p~-~~~v~~G~~v~l~C~~~--~~p~~~~~~W~~~g~~~~~~~~----------~~~~~~~~~~d~G~Y~C~ 69 (170)
T 3ry4_A 3 PKAVLKLEPP-WINVLQEDSVTLTCQGA--RSPESDSIQWFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQ 69 (170)
T ss_dssp CBCEEEEESC-CSEEETTCEEEEEEESC--CCSSSSCEEEEETTEECTTCCS----------SEEEEECCGGGCEEEEEE
T ss_pred CCCEEEeCCC-CeEEECCCcEEEEEEec--CCCCcceEEEEECCeEcccCcc----------ceEEEecccccCeEEEEE
Confidence 3455555544 56899999999999998 454 679999999999886533 366779999999999999
Q ss_pred EEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEE
Q psy2166 143 AWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAH 222 (805)
Q Consensus 143 a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~ 222 (805)
+.+..+. ....|.|...+ .+...+ . ..+.+|+.+.
T Consensus 70 ~~~~~~s--~~~~l~v~~~~-----------------------------------------~~~~~~-~-~~~~~g~~~~ 104 (170)
T 3ry4_A 70 TGQTSLS--DPVHLTVLFEW-----------------------------------------LVLQTP-H-LEFQEGETIM 104 (170)
T ss_dssp ETTSBCC--CCEEEEEECCS-----------------------------------------EEEECS-C-SEECTTCCEE
T ss_pred EeCCCce--EeEEEEEECCc-----------------------------------------eEecCC-C-ceeecCCeEE
Confidence 9875433 34556665322 111111 1 1367899999
Q ss_pred EEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCee-EEEEEEEEE
Q psy2166 223 FEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ-AEISVNLEC 295 (805)
Q Consensus 223 l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~-~~~~~~l~v 295 (805)
|.|.+. .+.|.+.+.|+++|..+... .....|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 105 l~C~~~-~~~p~~~~~W~~~g~~~~~~--------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 105 LRCHSW-KDKPLVKVTFFQNGKSQKFS--------HLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp EEEEEG-GGCCEEEEEEEETTEEEEEE--------SSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred EEEECC-CCCCCceEEEEECCeEcccc--------CCCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence 999884 35677999999999876422 12347999999999999999999999886 334444443
|
| >3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=4.2e-19 Score=170.22 Aligned_cols=173 Identities=12% Similarity=0.084 Sum_probs=125.9
Q ss_pred CCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEE
Q psy2166 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 280 (805)
Q Consensus 201 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 280 (805)
.+|.|...+.. .+.+|+.++|.|.+ .+ +.+.+.|+|+|..+..... ..........|.|.+++.+|+|.|+|.+
T Consensus 4 ~~P~i~~~p~~--~v~~G~~v~L~C~~--~~-~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 77 (196)
T 3p2t_A 4 PKPTLWAEPGS--VISWGNSVTIWCQG--TL-EAREYRLDKEESPAPWDRQ-NPLEPKNKARFSIPSMTEDYAGRYRCYY 77 (196)
T ss_dssp CCCEEEEESCS--EEETTCCEEEEEEC--CT-TCCEEEEEETTSCSCSEEE-CCCSSSSEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCEEEccCCC--cCCCCCcEEEEeeC--CC-CCCEEEEEECCCCCccccc-ccccCCceEEEEeccCCcccCceEEEEE
Confidence 35777777665 48899999999987 45 6689999999987754211 1111134578999999999999999999
Q ss_pred EcCCee--EEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCce-EEEE
Q psy2166 281 TNKWGQ--AEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRV-KMVS 357 (805)
Q Consensus 281 ~n~~g~--~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~-~~~~ 357 (805)
.|..+. .+..+.|.|.... .+|.+...+.. .+.+|+.++|.|.+. + +.+.+.|+|+|..+...... ....
T Consensus 78 ~n~~g~~~~s~~~~l~V~~~~--~~p~~~~~~~~--~v~~G~~v~L~C~~~--~-~~~~~~w~k~g~~~~~~~~~~~~~~ 150 (196)
T 3p2t_A 78 RSPVGWSQPSDPLELVMTGAY--SKPTLSALPSP--LVTSGKSVTLLCQSR--S-PMDTFLLCKERAAHPLLCLRSEHGA 150 (196)
T ss_dssp EETTEEBCCCCCEEEEEECSS--CCCEEEEESCS--EECTTCCEEEEEEEE--E-EEEEEEEEETTCCCGGGSEEEEEEE
T ss_pred eCCCcccCCCccEEEEecCCC--CCCEEEeCCcc--eecCCCeEEEEEecC--C-CCCEEEEEeCCCcccceeecccccc
Confidence 998873 3445666665422 35666655443 378999999999997 4 34689999999877543322 1112
Q ss_pred eCcEEEEEEcccCcCCceEEEEEEEeCce
Q psy2166 358 DFGFVVMDIAYVQSHDSGEYVCRAWNKYG 386 (805)
Q Consensus 358 ~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g 386 (805)
......|.|.++..+|+|.|+|.|.|..+
T Consensus 151 ~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~ 179 (196)
T 3p2t_A 151 QQHQAEFPMSPVTSVHGGTYRCFSSHGFS 179 (196)
T ss_dssp EEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred cCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence 22345799999999999999999999876
|
| >3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L* | Back alignment and structure |
|---|
Probab=99.80 E-value=6.5e-19 Score=171.54 Aligned_cols=175 Identities=14% Similarity=0.248 Sum_probs=128.2
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEEC--CEEcc------------CCCceEEEEeCcEEEEEEcccCcCCceEEEEEE
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFHN--GKPIF------------HKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRA 381 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~--g~~l~------------~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a 381 (805)
+.+|+.++|.|.+. +.+.+.+.|+|. +.... ...++.+........|.|.+++.+|+|.|+|.|
T Consensus 12 v~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 89 (213)
T 3mj8_L 12 VALGQKATITCSGD--KLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQS 89 (213)
T ss_dssp EETTSCEEEEEECS--STTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred EeCCCCEEEEEEcC--CCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEEe
Confidence 88999999999997 788999999982 22111 234666666777788999999999999999999
Q ss_pred EeCce---eeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEE
Q psy2166 382 WNKYG---EDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE 458 (805)
Q Consensus 382 ~n~~g---~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (805)
.|..+ .....+.|.|...+
T Consensus 90 ~~~~~~~~~~~~~~~l~V~~~~---------------------------------------------------------- 111 (213)
T 3mj8_L 90 WDGTNSAWVFGSGTKVTVLGQP---------------------------------------------------------- 111 (213)
T ss_dssp EETTTTEEEEBCCEEEEEECSC----------------------------------------------------------
T ss_pred ccCCcceeEEcCceEEEEeCCC----------------------------------------------------------
Confidence 99887 33444666664211
Q ss_pred EEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEE
Q psy2166 459 ARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKK 538 (805)
Q Consensus 459 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~ 538 (805)
..+|.+...+.... +.+|+.++|.|.+.+...|++.|+|+|||..
T Consensus 112 ----------------------------------~~~P~i~~~~~~~~-~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~ 156 (213)
T 3mj8_L 112 ----------------------------------NAAPSVTLFPPSSE-ELKTNQATLVCMINGFYPADVAVTWEADGTP 156 (213)
T ss_dssp ----------------------------------CBCCEEEEECCCHH-HHTTTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred ----------------------------------CCCCeEEccCCCcc-cccCCcEEEEEEeeceeCCCeEEEEEcCCcc
Confidence 25677776665554 5599999999999953234469999999999
Q ss_pred ccCCCceEE-EeeCC----EEEEEEccCCCCCCEEEEEEEEcCCcceEEEEE
Q psy2166 539 LPHGHRYRT-FHDFG----IVILDILYCYEENSGVYECRATNKYGSDVTKAS 585 (805)
Q Consensus 539 l~~~~~~~~-~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 585 (805)
+..+..... ...++ ...|.|.++..+|+|.|+|.|.|..+....++.
T Consensus 157 l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~ 208 (213)
T 3mj8_L 157 ITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLS 208 (213)
T ss_dssp ECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEEC
T ss_pred cCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeec
Confidence 965311100 00222 235999999999999999999999877665543
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-19 Score=169.51 Aligned_cols=163 Identities=12% Similarity=0.087 Sum_probs=119.8
Q ss_pred CCcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEE
Q psy2166 61 ETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYT 140 (805)
Q Consensus 61 ~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 140 (805)
....+|.+...+. ..+.+|++++|.|.+. + +.+.+.|+|+|... ...+ ..|.|.+++.+|+|.|+
T Consensus 4 ~~~~~P~i~~~p~--~~v~~G~~v~L~C~~~--~-~~~~~~W~k~g~~~--------~~~~--~~L~i~~v~~~D~G~Y~ 68 (184)
T 2gi7_A 4 GPLPKPSLQALPS--SLVPLEKPVTLRCQGP--P-GVDLYRLEKLSSSR--------YQDQ--AVLFIPAMKRSLAGRYR 68 (184)
T ss_dssp CCBCCCEEEEESC--SEEETTCCEEEEEECS--T-TCSEEEEEETTTCC--------EESS--SEEEESSCCGGGCEEEE
T ss_pred CCCCCCeEEeCCC--ccccCCCcEEEEEeCC--C-CCCEEEEEECCccc--------cCcc--cEEEECcCChhhCceEE
Confidence 3456788777665 3899999999999987 4 67899999998751 1111 27999999999999999
Q ss_pred EEEEeCCeeEE--EEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCC
Q psy2166 141 CRAWNLAGETF--TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEG 218 (805)
Q Consensus 141 C~a~n~~g~~~--~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g 218 (805)
|.+.|..|... ....|.|.... .+|.+...+. . .+.+|
T Consensus 69 C~a~n~~g~~~~s~~~~l~V~~~~--------------------------------------~~p~i~~~p~-~-~v~~G 108 (184)
T 2gi7_A 69 CSYQNGSLWSLPSDQLELVATGVF--------------------------------------AKPSLSAQPG-P-AVSSG 108 (184)
T ss_dssp EEEEETTEEBCCCCCEEEEEESSS--------------------------------------CCCEEEEECC-C-SSCCT
T ss_pred EEEEcCCCccCCCCCEEEEecCcC--------------------------------------CCCEEEeCCC-c-eecCC
Confidence 99999876432 34556554311 2455555442 2 47899
Q ss_pred ceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCe
Q psy2166 219 EIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG 285 (805)
Q Consensus 219 ~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 285 (805)
+.++|.|.+ .+.+ +.+.|+|+|..+..... .......|.|.+++.+|+|.|+|.|.|..+
T Consensus 109 ~~v~l~C~~--~~~~-~~~~w~k~g~~~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~ 168 (184)
T 2gi7_A 109 GDVTLQCQT--RYGF-DQFALYKEGDPAPYKNP----ERWYRASFPIITVTAAHSGTYRCYSFSSRD 168 (184)
T ss_dssp TCEEEEEEC--SSCC-CEEEEEECCCCTTSCCC----CEEEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred CcEEEEEEc--CCCC-cEEEEEECCCcCcceec----CCCceEEEEEccCCccCCeEEEEEEEeCCC
Confidence 999999986 4444 69999999988765322 112235699999999999999999999753
|
| >1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G | Back alignment and structure |
|---|
Probab=99.80 E-value=6e-20 Score=178.28 Aligned_cols=176 Identities=19% Similarity=0.253 Sum_probs=127.4
Q ss_pred CeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEec------------CCCCceEEEecCcEEEEEEccccc
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPL------------ELGSRFKTTADFGFVTLDLTEVYD 133 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~ 133 (805)
+..+...+..+.+.+|+.++|.|.+. +.|.+.|.|+|++..+ ....|+.+.. .+|.|.+++.
T Consensus 4 ~~~i~~~~~~~~v~~G~~v~L~C~~~--~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~L~i~~~~~ 77 (209)
T 1nbq_A 4 SVTVHSSEPEVRIPENNPVKLSCAYS--GFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP----TGITFKSVTR 77 (209)
T ss_dssp CCEEECSCSBCCEETTCCCEEECEEE--SCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET----TEEECSCCCT
T ss_pred eEEEEcCCCceEEEcCCCEEEEEEEe--CCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec----cEEEEeeCCH
Confidence 34444555578899999999999998 6789999999987552 2234555543 3899999999
Q ss_pred CCCeEEEEEEEeCCee--EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccccc
Q psy2166 134 RDQGIYTCRAWNLAGE--TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQH 211 (805)
Q Consensus 134 ~D~G~Y~C~a~n~~g~--~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 211 (805)
+|+|.|+|.+.+..|. ......|.|..++.. ......
T Consensus 78 ~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~-----------------------------------------~~~~~~ 116 (209)
T 1nbq_A 78 EDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSK-----------------------------------------PTVNIP 116 (209)
T ss_dssp TSCSEEEEEEEETTSSCEECCEEECCEEBCCCC-----------------------------------------CCCCCB
T ss_pred HHCcEEEEEEecCCCCccceEEEEEEEecCCcC-----------------------------------------CCcccc
Confidence 9999999999998653 344555666544321 111111
Q ss_pred ccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcE-------EEEEEcCeEEEEEcCCCCcccEEEEEEEEcCC
Q psy2166 212 LSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI-------RTVHAFGMVVLEILGTKIEDTGVYTCRATNKW 284 (805)
Q Consensus 212 ~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~-------~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 284 (805)
. .+.+|+.+.|.|.+. .+.|.+.+.|+++|..+...... ..........|.|.+++.+|+|.|+|.|.|..
T Consensus 117 ~-~~~~g~~~~l~C~~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 194 (209)
T 1nbq_A 117 S-SATIGNRAVLTCSEQ-DGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGY 194 (209)
T ss_dssp S-EEETTSCEEECCCCC-SCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSS
T ss_pred c-ceecCCEEEEEEeCC-CCCCCceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCc
Confidence 1 367899999999853 58888999999999988764321 00111233579999999999999999999999
Q ss_pred eeEEEE
Q psy2166 285 GQAEIS 290 (805)
Q Consensus 285 g~~~~~ 290 (805)
|....+
T Consensus 195 g~~~~s 200 (209)
T 1nbq_A 195 GTPMTS 200 (209)
T ss_dssp SCCEEC
T ss_pred Cccccc
Confidence 887443
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-19 Score=178.26 Aligned_cols=224 Identities=10% Similarity=0.058 Sum_probs=122.7
Q ss_pred cCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCce-EEEecCcEEEEEEcccccCCCeEEEE
Q psy2166 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRF-KTTADFGFVTLDLTEVYDRDQGIYTC 141 (805)
Q Consensus 63 ~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~-~~~~~~~~~~L~I~~~~~~D~G~Y~C 141 (805)
+.+|.+...+. ..|.+|++|+|.|.+. .+.+.|.|+|||..+...... ..........|.|.+++.+|+|.|+|
T Consensus 5 ~~kP~i~~~P~--~~V~~G~~VtL~C~~~---~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 79 (257)
T 1b6u_A 5 HRKPSLLAHPG--PLVKSEETVILQCWSD---VRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRC 79 (257)
T ss_dssp CCCCEECCBSC--SEEESSCCEEEEEEES---SCCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEE
T ss_pred CCCCEEEEcCC--CEecCCCCEEEEEecC---CCCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEE
Confidence 45677765443 5789999999999987 346789999998755321100 00111234589999999999999999
Q ss_pred EEEeCCe-----eEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccC
Q psy2166 142 RAWNLAG-----ETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLS 216 (805)
Q Consensus 142 ~a~n~~g-----~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~ 216 (805)
.+.+..+ .......|.|.... .+|.+...+.. .+.
T Consensus 80 ~a~~~~~~~~~s~~S~~~~L~V~~~~--------------------------------------~~P~l~~~p~~--~V~ 119 (257)
T 1b6u_A 80 YGSVTHSPYQLSAPSDPLDIVITGLY--------------------------------------EKPSLSAQPGP--TVL 119 (257)
T ss_dssp EEECSSCTTSCCCCCCCEEEEEECSS--------------------------------------CCCEEECSSCT--TCB
T ss_pred eEeccCCCccccccCCCEEEecccCC--------------------------------------CCcceEccCCC--ccC
Confidence 9986431 22334556665321 23555554432 478
Q ss_pred CCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEE-EcCeEEEEEcCCCCcccEEEEEEEEcCCe-----eEEEE
Q psy2166 217 EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH-AFGMVVLEILGTKIEDTGVYTCRATNKWG-----QAEIS 290 (805)
Q Consensus 217 ~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g-----~~~~~ 290 (805)
+|++++|.|.+ .+.+ +.+.|+|+|..+.......... ......|.|.+++ |+|.|+|.+.+... ..+..
T Consensus 120 ~G~~vtL~C~~--~~~~-~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~p 194 (257)
T 1b6u_A 120 AGESVTLSCSS--RSSY-DMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDP 194 (257)
T ss_dssp TTCEEEEEEEC--SSCC-SEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCC
T ss_pred CCCEEEEEEeC--CCCC-cEEEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCC
Confidence 99999999987 4443 6899999998765432211111 1124689999998 99999999997532 22344
Q ss_pred EEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECC
Q psy2166 291 VNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNG 344 (805)
Q Consensus 291 ~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g 344 (805)
+.|.|.. +|.+............|..+.|.|.+ |.+.+.+.|..-+
T Consensus 195 l~L~V~g-----~p~~~~p~~~~~~~~~g~~~~l~~~~---~~~~~~~~~~~~~ 240 (257)
T 1b6u_A 195 LLVSVTG-----NPSNSWPSPTEPSSETGNPRHLHAAA---EQKLISEEDLNLD 240 (257)
T ss_dssp EEECCBC-----CC----------------------------------------
T ss_pred EEEEEec-----cCCCCCCCCcccCccCCCeEEEEEEE---cchHHHHHHhhhh
Confidence 5666653 33333111111125569999999998 7888889997543
|
| >1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-18 Score=161.92 Aligned_cols=166 Identities=18% Similarity=0.163 Sum_probs=122.8
Q ss_pred CCCceecccccccccCCCceEEEEEEEeeCCCCCeE-EEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEE
Q psy2166 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMT-VEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 279 (805)
Q Consensus 201 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~-i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 279 (805)
.+|.+...+... .+.+|+.++|.|.+ .+.|.+. +.|+|+|..+... ...|.|.+++.+|+|.|+|.
T Consensus 6 ~~p~i~~~p~~~-~v~~G~~v~L~C~~--~~~p~~~~~~W~~~~~~~~~~----------~~~L~i~~~~~~d~G~Y~C~ 72 (175)
T 1fnl_A 6 PKAVVFLEPQWY-SVLEKDSVTLKCQG--AYSPEDNSTQWFHNESLISSQ----------ASSYFIDAATVNDSGEYRCQ 72 (175)
T ss_dssp CCCEEEEESCCS-EEETTCCEEEEEEC--CCBTTBCCCEEEETTEEEESS----------CSEEEESSCCGGGCEEEEEE
T ss_pred CCCEEEEcCCce-eeeCCCcEEEEeeC--CCCCCCcceEEEECCEEccCC----------ceEEEEeCCCcccCEEEEEE
Confidence 457777777654 48899999999988 5666555 8999999887642 23799999999999999999
Q ss_pred EEcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCC-CcEEEEEECCEEccCCCceEEEEe
Q psy2166 280 ATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDP-ELKVEWFHNGKPIFHKNRVKMVSD 358 (805)
Q Consensus 280 ~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p-~~~v~W~~~g~~l~~~~~~~~~~~ 358 (805)
+.|..+. ..+.+.|. .++..... ... .+.+|+.++|.|.+. +.+ .+.+.|+|+|..+... ..
T Consensus 73 ~~n~~~s--~~~~l~V~-----~~~~~~~~-~~~-~~~~g~~~~l~C~~~--~~~~~~~~~W~k~g~~~~~~------~~ 135 (175)
T 1fnl_A 73 TNLSTLS--DPVQLEVH-----IGWLLLQA-PRW-VFKEEDPIHLRCHSW--KNTALHKVTYLQNGKDRKYF------HH 135 (175)
T ss_dssp CSSSCCC--CCEEEEEE-----CSSEEEEC-SCS-EEETTCCEEEEEEEC--TTCCCEEEEEEETTEEEEEE------EE
T ss_pred eeCCccc--ccEEEEEe-----CCCceeeC-CCc-eecCCCCEEEEEEcC--CCCCceEEEEEECCeEccCC------CC
Confidence 9986553 34555554 23333332 223 378999999999997 554 4699999999887321 11
Q ss_pred CcEEEEEEcccCcCCceEEEEEEEeCcee-eEEEEEEEEEe
Q psy2166 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGE-DFTRATIKCFG 398 (805)
Q Consensus 359 ~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~ 398 (805)
...|.|.++..+|+|.|+|.|.|..+. ....+.|.|.+
T Consensus 136 --~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 174 (175)
T 1fnl_A 136 --NSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ 174 (175)
T ss_dssp --CCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred --CCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence 225999999999999999999997664 34456777653
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-18 Score=169.23 Aligned_cols=132 Identities=11% Similarity=0.074 Sum_probs=96.2
Q ss_pred EEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccC
Q psy2166 626 IVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLS 705 (805)
Q Consensus 626 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~ 705 (805)
...|.|.+++.+|+|.|+|.|.| .|.....+.|.|..++ ..|.+.. .. .+.
T Consensus 79 ~~~L~I~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~------------------------~~~~~~~---~~-~~~ 129 (222)
T 3sbw_C 79 NAALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNAPY------------------------NKINQRI---LV-VDP 129 (222)
T ss_dssp EEEEEESSCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCC------------------------CCCEEEE---EE-EET
T ss_pred EEEEEEcCcccccCeEEEEEEEe-CCCceeEEEEEEECCC------------------------CCCCcee---ee-eec
Confidence 45699999999999999999999 6777778888888543 1222211 12 567
Q ss_pred CCCeEEEEEEEeecCCCCeEEEEEEC-CEEccCCCCeEEE--eeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEE
Q psy2166 706 EGEIAHFEASLIPVGDQTMTVEFLYN-GKPIEASHRIRTV--HAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p~~~v~W~~~-g~~l~~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 782 (805)
+|+.++|.|.+. |.|.|.|+|+++ |..+......... .++....+.+..+..+|+|.|+|.|.|.+|....++.|
T Consensus 130 ~g~~v~L~C~~~--g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l 207 (222)
T 3sbw_C 130 VTSEHELTCQAE--GYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAEL 207 (222)
T ss_dssp TTTEEEEEEEEE--EBSCCEEEEEETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEE
T ss_pred CCCcEEEEEEec--CCCCCeEEEEECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEE
Confidence 899999999998 899999999998 6666544332221 11222223333455789999999999999999999999
Q ss_pred EEEEeC
Q psy2166 783 ECVVWS 788 (805)
Q Consensus 783 ~V~~~~ 788 (805)
.|...|
T Consensus 208 ~v~~~p 213 (222)
T 3sbw_C 208 VIPELP 213 (222)
T ss_dssp ECCCC-
T ss_pred EecCCc
Confidence 987544
|
| >3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ... | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-19 Score=172.52 Aligned_cols=177 Identities=17% Similarity=0.150 Sum_probs=125.9
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEECC--Eec------------CCCCceEEEecCcEEEEEEcccccCCCeE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG--KPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g--~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 138 (805)
+..+.+.+|+.++|.|.+. +.|.+.|.|+|++ ..+ ....|+.+..+++..+|.|.+++.+|+|.
T Consensus 8 p~~~~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 85 (213)
T 3d9a_L 8 PATLSVTPGNSVSLSCRAS--QSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGM 85 (213)
T ss_dssp CSEEEECTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred CccEEEeCCCcEEEEEECC--CCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEE
Confidence 4467899999999999998 5777889999853 221 12358888777778899999999999999
Q ss_pred EEEEEEeCCeeEEE-EEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCC
Q psy2166 139 YTCRAWNLAGETFT-STTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 217 (805)
Q Consensus 139 Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~ 217 (805)
|+|.|.|..+.... ...|.|.... .+|.+........ +.+
T Consensus 86 Y~C~~~~~~~~~~~~~~~l~V~~~~--------------------------------------~~p~v~~~~~~~~-~~~ 126 (213)
T 3d9a_L 86 YFCQQSNSWPYTFGGGTKLEIKRAD--------------------------------------AAPTVSIFPPSSE-QLT 126 (213)
T ss_dssp EEEEECSSSSCEECCCEEEEECCCC--------------------------------------BCCEEEEECCCHH-HHH
T ss_pred EEEeeecCCcceeCCCEEEEEecCC--------------------------------------CCceeEeECCChh-hcC
Confidence 99999998765433 3456664321 2455554333322 347
Q ss_pred CceEEEEEEEeeCCCCCe-EEEEEECCEEccCCCcEEE-EE--EcC----eEEEEEcCCCCcccEEEEEEEEcCCeeEEE
Q psy2166 218 GEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRIRT-VH--AFG----MVVLEILGTKIEDTGVYTCRATNKWGQAEI 289 (805)
Q Consensus 218 g~~~~l~C~~~~~~~p~~-~i~W~k~g~~l~~~~~~~~-~~--~~~----~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~ 289 (805)
|+.++|.|.+.. ..|.+ .+.|+|+|..+........ .. .++ .+.|.|.++..+|+|.|+|.|.|.......
T Consensus 127 g~~~~l~C~~~g-~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~ 205 (213)
T 3d9a_L 127 SGGASVVCFLNN-FYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPI 205 (213)
T ss_dssp TTEEEEEEEEEE-EBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCE
T ss_pred CCcEEEEEEEee-ecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCce
Confidence 889999999852 24554 8999999998876511110 00 111 248999999999999999999998765433
Q ss_pred EE
Q psy2166 290 SV 291 (805)
Q Consensus 290 ~~ 291 (805)
..
T Consensus 206 ~~ 207 (213)
T 3d9a_L 206 VK 207 (213)
T ss_dssp EE
T ss_pred EE
Confidence 33
|
| >2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-19 Score=171.58 Aligned_cols=174 Identities=10% Similarity=0.061 Sum_probs=115.0
Q ss_pred CCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEE
Q psy2166 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 280 (805)
Q Consensus 201 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 280 (805)
.+|.|...+.. .+.+|+.++|.|.+ .+.|. .+.|+|+|..+...... .........|.|.+++.+|+|.|+|.+
T Consensus 4 ~~P~i~~~p~~--~v~~G~~v~L~C~~--~~~~~-~~~W~k~g~~~~~~~~~-~~~~~~~~~L~i~~v~~~D~G~Y~C~a 77 (196)
T 2d3v_A 4 SKATLWAEPGS--VISRGNSVTIRCQG--TLEAQ-EYRLVKEGSPEPWDTQN-PLEPKNKARFSIPSMTEHHAGRYRCYY 77 (196)
T ss_dssp CBCEEEEESCS--EEETTCCEEEEEEC--CTTCC-EEEEEETTCSSCSEEEC-CCSSTTEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCEEEeCCCC--cccCCCeEEEEEeC--CCCCc-EEEEEECCCCCCccccc-ccCCccccEEEeccCChhHCeEEEEEE
Confidence 45777776653 48899999999987 56665 99999999876532110 011234578999999999999999999
Q ss_pred EcCCeeE--EEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCce-EEEE
Q psy2166 281 TNKWGQA--EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRV-KMVS 357 (805)
Q Consensus 281 ~n~~g~~--~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~-~~~~ 357 (805)
.|..+.. +..+.|.|.... .+|.+...+. . .+.+|+.++|.|.+. +.| +.+.|+|+|..+...... ....
T Consensus 78 ~n~~g~~~~s~~~~l~V~~~~--~~p~i~~~~~-~-~v~~G~~v~L~C~~~--~~p-~~~~W~k~g~~~~~~~~~~~~~~ 150 (196)
T 2d3v_A 78 YSPAGWSEPSDPLELVVTGFY--NKPTLSALPS-P-VVTSGENVTLQCGSR--LRF-DRFILTEEGDHKLSWTLDSQLTP 150 (196)
T ss_dssp EETTEECBCCCCEEEEEECSS--CCCEEEC-------------CEEEEEES--SCC-SEEEEEEC---CCEEEEECEECT
T ss_pred eCCCCcCCcCccEEEEecCCC--CCCeEEccCC-c-cccCCCcEEEEEEcC--CCC-CEEEEEccCCccccccccccccc
Confidence 9987643 344666665421 3566654432 2 388999999999997 677 899999999887432111 0110
Q ss_pred -eCcEEEEEEcccCcCCceEEEEEEEeCcee
Q psy2166 358 -DFGFVVMDIAYVQSHDSGEYVCRAWNKYGE 387 (805)
Q Consensus 358 -~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~ 387 (805)
......|.|.++..+|+|.|+|.|.|..+.
T Consensus 151 ~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~ 181 (196)
T 2d3v_A 151 SGQFQALFPVGPVTPSHRWMLRCYGSRRHIL 181 (196)
T ss_dssp TSCEEEEEECCCCBTTBCEEEEEEEEETTEE
T ss_pred CCCceeEEEeeecCcccCeeEEEEEEccCCC
Confidence 112357999999999999999999998754
|
| >1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.3e-19 Score=171.14 Aligned_cols=173 Identities=15% Similarity=0.181 Sum_probs=123.3
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec------------CCCCceEEEecCcEEEEEEcccccCCCeE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 138 (805)
+..+.+.+|+.++|.|.+. +.|.+.|.|+|+ |..+ ....|+.+...++..+|.|.+++.+|+|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~--~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 84 (210)
T 1lk3_L 7 PPALTVSPGEKLTISCKAS--ESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAI 84 (210)
T ss_dssp CSEEEECTTSCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred CCcEEEcCCCCEEEEeeCC--CccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeE
Confidence 4578899999999999998 567788999994 3222 12358887777778899999999999999
Q ss_pred EEEEEEeCCeeEEE-EEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCC
Q psy2166 139 YTCRAWNLAGETFT-STTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 217 (805)
Q Consensus 139 Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~ 217 (805)
|.|.|.|..+.... ...|.|.... .+|.+...+.... +.+
T Consensus 85 Y~C~~~~~~~~~~~~~~~l~V~~~~--------------------------------------~~P~v~~~~~~~~-~~~ 125 (210)
T 1lk3_L 85 YFCQQSWNGPLTFGAGTKLELKRAD--------------------------------------AAPTVSIFPPSTE-QLA 125 (210)
T ss_dssp EEEEECSSSSCEECCCEEEEECCCC--------------------------------------BCCEEEEECCCHH-HHT
T ss_pred EEEEEEcCCCceeCCCEEEEEcCCC--------------------------------------cCCeEEEECCchh-hcc
Confidence 99999987654332 3456664321 2455554433332 347
Q ss_pred CceEEEEEEEeeCCCCC-eEEEEEECCEEccCCCcEE--EEE-EcC----eEEEEEcCCCCcccEEEEEEEEcCCeeE
Q psy2166 218 GEIAHFEASLIPVGDQT-MTVEFLYNGKPIEASHRIR--TVH-AFG----MVVLEILGTKIEDTGVYTCRATNKWGQA 287 (805)
Q Consensus 218 g~~~~l~C~~~~~~~p~-~~i~W~k~g~~l~~~~~~~--~~~-~~~----~~~L~i~~~~~~d~G~Y~C~~~n~~g~~ 287 (805)
|+.++|.|.+.. ..|. +.|.|+|+|..+....... ... .++ .+.|.|.++..+|+|.|+|.|.|.....
T Consensus 126 g~~v~l~C~~~g-~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 202 (210)
T 1lk3_L 126 TGGASVVCLMNN-FYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSS 202 (210)
T ss_dssp TTEEEEEEEEEE-EBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred CCcEEEEEEEEe-EeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCC
Confidence 999999999852 2444 4999999999886551111 011 111 2479999999999999999999976543
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-18 Score=170.67 Aligned_cols=129 Identities=16% Similarity=0.198 Sum_probs=104.7
Q ss_pred EEeccCCCCCcEEEEEEEEeCC-cceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCC
Q psy2166 629 LDILYCYEENSGVYECRATNKY-GSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEG 707 (805)
Q Consensus 629 L~i~~~~~~d~G~Y~C~a~n~~-g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G 707 (805)
|.|.+++.+|+|.|+|.|.|.. |.....+.|.|..+| ..|.+...+... .+.+|
T Consensus 79 L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p------------------------~~~~~~~~~~~~-~~~~g 133 (231)
T 2pet_A 79 LVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKP------------------------EATEVSPNKGTL-SVMED 133 (231)
T ss_dssp EEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCC------------------------CCCEEEECCSSC-CTTCC
T ss_pred EEEcccCcccCceEEEEEEecCCCceEEEEEEEEEecC------------------------CCcEEecCCcce-eecCC
Confidence 9999999999999999999997 888888999998755 457787777777 88999
Q ss_pred CeE-EEEEEE-eecCCCCeEEEEEECCEEccCCC----CeEEEeeC-----c----EEEEEEcCCCCCCCEEEEEEEEc-
Q psy2166 708 EIA-HFEASL-IPVGDQTMTVEFLYNGKPIEASH----RIRTVHAF-----G----MVVLEILGTKIEDTGVYTCRATN- 771 (805)
Q Consensus 708 ~~~-~l~C~~-~~~g~p~~~v~W~~~g~~l~~~~----~~~~~~~~-----~----~~~L~i~~v~~~d~G~Y~C~a~N- 771 (805)
+.+ .|.|.+ . |.|.|.|+|+|+|..+.... ++.+.... + ...|.|.....+|+|.|+|.|.|
T Consensus 134 ~~~~~l~C~~~~--~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~ 211 (231)
T 2pet_A 134 SAQEIATCNSRN--GNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS 211 (231)
T ss_dssp SEEEEEEEEEEE--EBSCCEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred CceEEEEEEeEC--cccCCEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence 998 999999 6 89999999999999988776 55443221 1 15688986677779999999999
Q ss_pred ----CCcc-EEEEEEEEE
Q psy2166 772 ----KWGQ-AEISVNLEC 784 (805)
Q Consensus 772 ----~~G~-~~~~~~l~V 784 (805)
..|. .+.++.|+|
T Consensus 212 ~~~~~~~~~~s~~~~l~V 229 (231)
T 2pet_A 212 LPEGRHGRLDSPTFHLTL 229 (231)
T ss_dssp CGGGCEEEEECCCEECCC
T ss_pred CcccccccccccceEEEE
Confidence 5665 556666655
|
| >1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=167.16 Aligned_cols=183 Identities=11% Similarity=0.089 Sum_probs=120.0
Q ss_pred CCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCcEEEEEEcccCcCCceEEEEEE
Q psy2166 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRA 381 (805)
Q Consensus 302 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a 381 (805)
.+|.+...+.. .+.+|+.++|.|.+. +.|. .+.|+|+|..+........ .......|.|.++..+|+|.|+|.|
T Consensus 4 ~~P~i~~~p~~--~v~~G~~v~L~C~~~--~~~~-~~~W~k~g~~~~~~~~~~~-~~~~~~~L~i~~v~~~D~G~Y~C~a 77 (198)
T 1ugn_A 4 PKPTLWAEPGS--VITQGSPVTLRCQGG--QETQ-EYRLYREKKTAPWITRIPQ-ELVKKGQFPIPSITWEHTGRYRCYY 77 (198)
T ss_dssp CCCEEEEESCS--EEETTCCEEEEEECC--TTCC-CEEEEESSSCCHHHHTSCH-HHHTTTEEEESSCCGGGCEEEEEEE
T ss_pred CCCeEeccCCC--cccCCCcEEEEEEec--CCCc-EEEEEECCccccccccccc-cCCcccEEEECCCCHHHCeEEEEEE
Confidence 56777766553 388999999999986 5555 6999999987742111000 0011226889999999999999999
Q ss_pred EeCc-ee--eEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEE
Q psy2166 382 WNKY-GE--DFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE 458 (805)
Q Consensus 382 ~n~~-g~--~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (805)
.|.. |. ....+.|.|...
T Consensus 78 ~n~~~g~~~~s~~~~l~V~~~----------------------------------------------------------- 98 (198)
T 1ugn_A 78 GSDTAGRSESSDPLELVVTGA----------------------------------------------------------- 98 (198)
T ss_dssp EETTTEECCCCCCEEEEEECS-----------------------------------------------------------
T ss_pred ECCCCCcccCCccEEEEEccc-----------------------------------------------------------
Confidence 9987 63 234466666421
Q ss_pred EEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEE
Q psy2166 459 ARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKK 538 (805)
Q Consensus 459 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~ 538 (805)
..+|.+...+ .. .+.+|++++|.|.+. +. .+.|+|+|+|..
T Consensus 99 ----------------------------------~~~p~i~~~~-~~-~v~~G~~v~L~C~~~--~~-~~~v~W~k~g~~ 139 (198)
T 1ugn_A 99 ----------------------------------YIKPTLSAQP-SP-VVNSGGNVTLQCDSQ--VA-FDGFILCKEGED 139 (198)
T ss_dssp ----------------------------------SCCCEEEEES-CS-EEETTCCEEEEEECS--SC-CSEEEEEEC---
T ss_pred ----------------------------------ccCCccccCC-cc-ccCCCCcEEEEEecC--CC-CcEEEEEECCCc
Confidence 1234444332 22 388999999999998 55 679999999998
Q ss_pred ccCCCc-eEEE-eeCCEEEEEEccCCCCCCEEEEEEEEcCCcce-----EEEEEEEE
Q psy2166 539 LPHGHR-YRTF-HDFGIVILDILYCYEENSGVYECRATNKYGSD-----VTKASLKC 588 (805)
Q Consensus 539 l~~~~~-~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-----~~~~~l~V 588 (805)
+..... +... ..+....|.|.+++.+|+|.|+|.|.|..+.. +..+.|.|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V 196 (198)
T 1ugn_A 140 EHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLV 196 (198)
T ss_dssp ---CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEE
T ss_pred cCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEe
Confidence 754321 1111 12235679999999999999999999987632 33455555
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... | Back alignment and structure |
|---|
Probab=99.79 E-value=4.8e-19 Score=167.96 Aligned_cols=160 Identities=13% Similarity=0.188 Sum_probs=121.3
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecCC--------------CCceEEEe---cCcEEEEEEcccccCCCe
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL--------------GSRFKTTA---DFGFVTLDLTEVYDRDQG 137 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~--------------~~~~~~~~---~~~~~~L~I~~~~~~D~G 137 (805)
.+.+.+|+.++|.|.+. +.|.+.|.|+|++..+.. ..|+.... .++..+|.|.+++.+|+|
T Consensus 4 ~v~~~~G~~v~L~C~~~--~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G 81 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSD 81 (184)
T ss_dssp EEEEETTSCEEECCBCS--SSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCE
T ss_pred cEEEeCCCCEEEEEEEc--CCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCE
Confidence 46789999999999988 688889999999863211 22444432 234557999999999999
Q ss_pred EEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCC
Q psy2166 138 IYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 217 (805)
Q Consensus 138 ~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~ 217 (805)
.|+|.+.|..+ ...|.|.... .++ . ..+.+
T Consensus 82 ~Y~C~~~~~~~----~~~l~V~~~~--------------------------------------~~~-------~-~~v~~ 111 (184)
T 2ny1_B 82 TYICEVEDQKE----EVQLLVFGLT--------------------------------------ANS-------D-THLLQ 111 (184)
T ss_dssp EEEEEETTEEE----EEEEEEEEEE--------------------------------------ESS-------C-SEEET
T ss_pred EEEEEEEcCCC----cEEEEEEEec--------------------------------------CCC-------C-ceeec
Confidence 99999987644 3445554210 000 1 13679
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEec
Q psy2166 218 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD 297 (805)
Q Consensus 218 g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~ 297 (805)
|+.++|.|.+ .+.|.+.+.|+++|..+. . ....|.|.+++.+|+|.|+|.|.|..+..+..+.|.|..
T Consensus 112 g~~~~l~C~~--~~~p~~~v~W~~~~~~~~--------~--~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~ 179 (184)
T 2ny1_B 112 GQSLTLTLES--PPGSSPSVQCRSPRGKNI--------Q--GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLA 179 (184)
T ss_dssp TCCEEEEEEC--CTTCCCEEEEECTTSCEE--------E--ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CCCEEEEEEc--CCCCCCEEEEEeCCCccc--------c--CceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEe
Confidence 9999999988 577899999999986541 1 123799999999999999999999999999999998875
Q ss_pred c
Q psy2166 298 K 298 (805)
Q Consensus 298 ~ 298 (805)
.
T Consensus 180 ~ 180 (184)
T 2ny1_B 180 F 180 (184)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-18 Score=168.44 Aligned_cols=180 Identities=12% Similarity=0.068 Sum_probs=116.8
Q ss_pred CCCCceecCCCcEEEEEEEecCCC-CCceEEEEECCEe-----------cCC------CCceEEEec---CcEEEEEEcc
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKND-PNLKIEWIFNGKP-----------LEL------GSRFKTTAD---FGFVTLDLTE 130 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~-p~~~v~W~k~g~~-----------i~~------~~~~~~~~~---~~~~~L~I~~ 130 (805)
+...+.+.+|++|+|.|.+.+... ....|+|+|++.. +.. ..|...... .+..+|.|.+
T Consensus 10 P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~ 89 (226)
T 4f80_A 10 PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHN 89 (226)
T ss_dssp CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESS
T ss_pred CCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEee
Confidence 344578899999999999984322 2237999987532 211 123333322 3567899999
Q ss_pred cccCCCeEEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccc
Q psy2166 131 VYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQ 210 (805)
Q Consensus 131 ~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 210 (805)
++.+|+|.|+|.|.|..|.......+.+..... .+..
T Consensus 90 v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~--------------------------------------~~~~----- 126 (226)
T 4f80_A 90 VTASDSGKYLCYFQDGDFYEKALVELKVAALGS--------------------------------------DLHV----- 126 (226)
T ss_dssp CCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCC--------------------------------------CCEE-----
T ss_pred CchHHCeeEEEEEECCCcEEEEEEEEeecccee--------------------------------------cccc-----
Confidence 999999999999999888776655544432110 0100
Q ss_pred cccccCCCceEEEEEEEeeCCCCCeEEEEEECC-EEccCCCcEEEEEEcC-eEEEEEcCCCCcccEEEEEEEEcCCeeEE
Q psy2166 211 HLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG-KPIEASHRIRTVHAFG-MVVLEILGTKIEDTGVYTCRATNKWGQAE 288 (805)
Q Consensus 211 ~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g-~~l~~~~~~~~~~~~~-~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~ 288 (805)
...+.+|+.+.|.|.+. .+.|.|+|.|+|++ ..+...........++ ...+.+.+++.+|+|.|+|.|.|..|..+
T Consensus 127 -~~~~~~g~~v~l~c~~~-g~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~ 204 (226)
T 4f80_A 127 -DVKGYKDGGIHLECRST-GWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLE 204 (226)
T ss_dssp -EEEEEETTEEEEEEEEE-EEBSCCEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEE
T ss_pred -eeeeccCCceeeEEEec-cCCCCCEEEEEECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeE
Confidence 11366899999999984 24688999999965 4443332222222223 23344556788999999999999999999
Q ss_pred EEEEEEEe
Q psy2166 289 ISVNLECV 296 (805)
Q Consensus 289 ~~~~l~v~ 296 (805)
.++.|.|.
T Consensus 205 ~~~~v~v~ 212 (226)
T 4f80_A 205 KTASISIA 212 (226)
T ss_dssp EEEEECCC
T ss_pred EEEEEEEC
Confidence 88888774
|
| >3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ... | Back alignment and structure |
|---|
Probab=99.78 E-value=9.5e-19 Score=170.05 Aligned_cols=176 Identities=15% Similarity=0.158 Sum_probs=127.4
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEEC--CEecC------------CCCceEEEecCcEEEEEEcccccCCCeEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPLE------------LGSRFKTTADFGFVTLDLTEVYDRDQGIYT 140 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i~------------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 140 (805)
.+.+.+|+.++|.|.+. +.+.|.|+|+ +..+. ...|+.+...++..+|.|.+++.+|+|.|+
T Consensus 9 ~~~v~~G~~v~L~C~~~----~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 84 (211)
T 3tv3_L 9 SASGSPGQSITISCTGT----SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYY 84 (211)
T ss_dssp EEEECTTCEEEEEEECC----CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEE
T ss_pred eEEEcCCCCEEEEEEEC----CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEE
Confidence 67899999999999986 6779999994 32221 345788777777889999999999999999
Q ss_pred EEEEeCCe--eEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCC
Q psy2166 141 CRAWNLAG--ETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEG 218 (805)
Q Consensus 141 C~a~n~~g--~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g 218 (805)
|.+.|..+ .......|.|...+ ..+|.+...+.... +.+|
T Consensus 85 C~~~~~~~~~~~~~~~~l~V~~~~-------------------------------------~~~P~v~~~~~~~~-~~~g 126 (211)
T 3tv3_L 85 CGSLVGNWDVIFGGGTKLTVLGQP-------------------------------------KAAPSVTLFPPSSE-ELQA 126 (211)
T ss_dssp EEEEETTTEEEECCCEEEEECCSC-------------------------------------CBCCEEEEECCCHH-HHHT
T ss_pred EEEecCCCceeECCCceEEEeCCC-------------------------------------CcCCeeEecCCchh-hhcC
Confidence 99999876 33445566665211 13566665554443 3479
Q ss_pred ceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEE--EEEcC----eEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEE
Q psy2166 219 EIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT--VHAFG----MVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 292 (805)
Q Consensus 219 ~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~--~~~~~----~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~ 292 (805)
+.++|.|.+.....|.+.+.|+|+|..+........ ...++ ...|.|.++..+|+|.|+|.|.|..+..+.++.
T Consensus 127 ~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~~ 206 (211)
T 3tv3_L 127 NKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVA 206 (211)
T ss_dssp TCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEEC
T ss_pred CCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeecc
Confidence 999999998532235689999999998865311110 11111 257999999999999999999999876665543
|
| >1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* | Back alignment and structure |
|---|
Probab=99.78 E-value=7e-19 Score=171.16 Aligned_cols=183 Identities=11% Similarity=0.116 Sum_probs=126.3
Q ss_pred CCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeE--EEEEcCCCCcccEEEEE
Q psy2166 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV--VLEILGTKIEDTGVYTC 278 (805)
Q Consensus 201 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C 278 (805)
.+|.|...+.. .+.+|+.++|.|.+ .+ +.+.+.|+|+|..+...... ........ .|.|.+++.+|+|.|+|
T Consensus 8 ~~P~i~~~p~~--~v~~G~~vtL~C~~--~~-~~~~~~W~k~g~~~~~~~~~-~~~~~~~~~~~L~I~~v~~~D~G~Y~C 81 (218)
T 1uct_A 8 PMPFISAKSSP--VIPLDGSVKIQCQA--IR-EAYLTQLMIIKNSTYREIGR-RLKFWNETDPEFVIDHMDANKAGRYQC 81 (218)
T ss_dssp CCCCEEESSCS--EEETTCCEEEEECC--CT-TCSEEEEEEEETTEEEECSE-ECC----CCCEEEECSCCGGGCEEEEE
T ss_pred CCCEEEecCCC--ccCCCCCEEEEEEc--CC-CCCEEEEEECCCcccccccc-cCCCCcceeeEEEEcccccccCEEEEE
Confidence 56778777663 48899999999987 44 57899999998765432211 11111223 79999999999999999
Q ss_pred EEEcCCeeEE--EEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEE
Q psy2166 279 RATNKWGQAE--ISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV 356 (805)
Q Consensus 279 ~~~n~~g~~~--~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~ 356 (805)
.+.|..+... ..+.|.|.... .+|.+...+. . .+.+|+.++|.|... +.+.+.+.|+|+|..+... ..
T Consensus 82 ~a~n~~~~~~~s~~~~l~V~~~~--~~P~i~~~p~-~-~v~~G~~v~L~C~~~--~~~~~~~~W~k~g~~~~~~--~~-- 151 (218)
T 1uct_A 82 QYRIGHYRFRYSDTLELVVTGLY--GKPFLSADRG-L-VLMPGENISLTCSSA--HIPFDRFSLAKEGELSLPQ--HQ-- 151 (218)
T ss_dssp EEEETTTEEEECCCEEEEEECSS--CCCEEEESSC-S-EECTTCCCEEEEECS--SSCCSEEEEEETTCSSCCS--EE--
T ss_pred EEEcCCCceeecCCEEEEEcCcc--cCCEEEeCCC-C-ccCCCCCEEEEEeCC--CCCCCEEEEEECCCccccc--cc--
Confidence 9999765433 34556655321 3566655442 2 378999999999664 6777899999999877542 11
Q ss_pred EeCcEEEEEEcccCcCCceEEEEEEEeCce-----eeEEEEEEEEEec
Q psy2166 357 SDFGFVVMDIAYVQSHDSGEYVCRAWNKYG-----EDFTRATIKCFGK 399 (805)
Q Consensus 357 ~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g-----~~~~~~~l~V~~~ 399 (805)
.......|.|.++..+|+|.|+|.|.|... .....+.|.|.+.
T Consensus 152 ~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~ 199 (218)
T 1uct_A 152 SGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDS 199 (218)
T ss_dssp ECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC--
T ss_pred CCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecC
Confidence 222334799999999999999999998642 2223466777643
|
| >4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=170.65 Aligned_cols=180 Identities=11% Similarity=0.062 Sum_probs=122.0
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCc---eEEEEECCEecCCC------------------CceEEEe---cCcEEEEE
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNL---KIEWIFNGKPLELG------------------SRFKTTA---DFGFVTLD 127 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~---~v~W~k~g~~i~~~------------------~~~~~~~---~~~~~~L~ 127 (805)
.++.+.|.+|++++|.|.+.+ .|.+ .|+|+|++..+... .|+.+.. .....+|.
T Consensus 5 ~p~~vtv~~G~~v~L~C~v~~--~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~ 82 (218)
T 4frw_A 5 TSDVVTVVLGQDAKLPCFYRG--DSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVL 82 (218)
T ss_dssp CCSEEEEETTSCEEECCEECC--CTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEE
T ss_pred CCCeEEEEcCCCEEEEEEEEc--CCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEE
Confidence 445688999999999999984 4443 58999987554321 1222211 12345799
Q ss_pred EcccccCCCeEEEEEEEeCCeeEEE-EEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCcee
Q psy2166 128 LTEVYDRDQGIYTCRAWNLAGETFT-STTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFT 206 (805)
Q Consensus 128 I~~~~~~D~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 206 (805)
|.+++.+|+|.|.|.+.+..+.... ...+.+...+ +.+.
T Consensus 83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~ 122 (218)
T 4frw_A 83 LRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPP----------------------------------------LPSL 122 (218)
T ss_dssp ESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCC----------------------------------------CCEE
T ss_pred EeeccHHHCCceeEEEEeccCceeeeEEEEEEeeec----------------------------------------ccee
Confidence 9999999999999999886544333 3333333211 1111
Q ss_pred cccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEE-EcCeEEEEEcCCCCcccEEEEEEEEcCCe
Q psy2166 207 SEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH-AFGMVVLEILGTKIEDTGVYTCRATNKWG 285 (805)
Q Consensus 207 ~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 285 (805)
.. .....+.+|+.+.|.|.+ .+.|.|.|.|++++..+.......... ....+.|.|.++..+|+|.|+|.|.|..|
T Consensus 123 ~~-~~~~~~~~~~~~~~~c~~--~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g 199 (218)
T 4frw_A 123 NP-GPALEEGQGLTLAASCTA--EGSPAPSVTWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGL 199 (218)
T ss_dssp EE-CSCEETTCCSEEEEEEEE--EEBSCCEEEEEESSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTC
T ss_pred ee-eeeeeeeeccccceeeec--cCCcCceEEEEECCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCC
Confidence 11 122246789999999988 688889999999998775443221110 11245799999999999999999999998
Q ss_pred eEEEEEEEEEe
Q psy2166 286 QAEISVNLECV 296 (805)
Q Consensus 286 ~~~~~~~l~v~ 296 (805)
..+..+.+.|.
T Consensus 200 ~~~~~~t~~v~ 210 (218)
T 4frw_A 200 LQDQRITHILH 210 (218)
T ss_dssp SSCEEEEEECC
T ss_pred CeEEEEEEEEE
Confidence 87766666654
|
| >1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-18 Score=166.80 Aligned_cols=178 Identities=15% Similarity=0.219 Sum_probs=124.5
Q ss_pred CCCceecCCCcEEEEEEEecCCCC---CceEEEEECC--Eec------------CCCCceEEEecCcEEEEEEcccccCC
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDP---NLKIEWIFNG--KPL------------ELGSRFKTTADFGFVTLDLTEVYDRD 135 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p---~~~v~W~k~g--~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D 135 (805)
+..+.+.+|+.++|.|.+. +.| .+.|.|+|++ ..+ ....|+.+...++..+|.|.+++.+|
T Consensus 7 p~~~~v~~G~~v~L~C~~~--~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 84 (212)
T 1q0x_L 7 ESALTTSPGETVTLTCRSS--TGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTED 84 (212)
T ss_dssp CSEEEECTTCCEEEEEEES--SSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred CCeEeecCCCCEEEEEEec--ccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccC
Confidence 4467899999999999998 444 4789999963 222 22467877777778899999999999
Q ss_pred CeEEEEEEEeCCeeEE-EEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccc
Q psy2166 136 QGIYTCRAWNLAGETF-TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSN 214 (805)
Q Consensus 136 ~G~Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 214 (805)
+|.|.|.+.|..+... ....|.|.... ..+|.+........
T Consensus 85 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~-------------------------------------~~~P~v~~~~~~~~- 126 (212)
T 1q0x_L 85 EAIYFCALWSNNKLVFGGGTKLTVLGQP-------------------------------------KSSPTVTLFPPSSE- 126 (212)
T ss_dssp CEEEEEEEECSSCEEECCCEEEEECCSC-------------------------------------CBCCEEEEECCCHH-
T ss_pred CEEEEEEEecCchhhcCCCeEEEEecCC-------------------------------------CCCCeeEEeCCCHH-
Confidence 9999999999765432 23445553211 13466655443332
Q ss_pred cCCCceEEEEEEEeeCCCCC-eEEEEEECCEEccCCCcEE--EEEEcC----eEEEEEcCCCCcccEEEEEEEEcCCeeE
Q psy2166 215 LSEGEIAHFEASLIPVGDQT-MTVEFLYNGKPIEASHRIR--TVHAFG----MVVLEILGTKIEDTGVYTCRATNKWGQA 287 (805)
Q Consensus 215 v~~g~~~~l~C~~~~~~~p~-~~i~W~k~g~~l~~~~~~~--~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~n~~g~~ 287 (805)
+.+|+.++|.|.+.. ..|. ..|.|+|+|..+....... ....++ .+.|.|.++..+|+|.|+|.|.|.....
T Consensus 127 ~~~g~~v~L~C~~~g-~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 205 (212)
T 1q0x_L 127 ELSTAKATLVCTITD-FYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSS 205 (212)
T ss_dssp HHTTTEEEEEEEEEE-EBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEE
T ss_pred HccCCcEEEEEEEEE-EeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcce
Confidence 447899999999853 2343 4999999999987542211 111111 2478999999999999999999987665
Q ss_pred EEEE
Q psy2166 288 EISV 291 (805)
Q Consensus 288 ~~~~ 291 (805)
..++
T Consensus 206 ~~~v 209 (212)
T 1q0x_L 206 NKTL 209 (212)
T ss_dssp EEEE
T ss_pred eeee
Confidence 4443
|
| >2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=165.41 Aligned_cols=160 Identities=14% Similarity=0.133 Sum_probs=118.8
Q ss_pred CCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEE
Q psy2166 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 280 (805)
Q Consensus 201 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 280 (805)
.+|.|...+.. .+.+|++++|.|.+ .+ +.+.+.|+|+|... ......|.|.+++.+|+|.|+|.+
T Consensus 7 ~~P~i~~~p~~--~v~~G~~v~L~C~~--~~-~~~~~~W~k~g~~~----------~~~~~~L~i~~v~~~D~G~Y~C~a 71 (184)
T 2gi7_A 7 PKPSLQALPSS--LVPLEKPVTLRCQG--PP-GVDLYRLEKLSSSR----------YQDQAVLFIPAMKRSLAGRYRCSY 71 (184)
T ss_dssp CCCEEEEESCS--EEETTCCEEEEEEC--ST-TCSEEEEEETTTCC----------EESSSEEEESSCCGGGCEEEEEEE
T ss_pred CCCeEEeCCCc--cccCCCcEEEEEeC--CC-CCCEEEEEECCccc----------cCcccEEEECcCChhhCceEEEEE
Confidence 56777776654 48899999999987 45 67899999998751 112347999999999999999999
Q ss_pred EcCCeeE--EEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEe
Q psy2166 281 TNKWGQA--EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD 358 (805)
Q Consensus 281 ~n~~g~~--~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~ 358 (805)
.|..+.. +..+.|.|.... .+|.+...+ .. .+.+|+.++|.|.+. +. .+.+.|+|+|..+.......
T Consensus 72 ~n~~g~~~~s~~~~l~V~~~~--~~p~i~~~p-~~-~v~~G~~v~l~C~~~--~~-~~~~~w~k~g~~~~~~~~~~---- 140 (184)
T 2gi7_A 72 QNGSLWSLPSDQLELVATGVF--AKPSLSAQP-GP-AVSSGGDVTLQCQTR--YG-FDQFALYKEGDPAPYKNPER---- 140 (184)
T ss_dssp EETTEEBCCCCCEEEEEESSS--CCCEEEEEC-CC-SSCCTTCEEEEEECS--SC-CCEEEEEECCCCTTSCCCCE----
T ss_pred EcCCCccCCCCCEEEEecCcC--CCCEEEeCC-Cc-eecCCCcEEEEEEcC--CC-CcEEEEEECCCcCcceecCC----
Confidence 9987643 344566664321 456666554 32 378999999999975 44 46999999998876532211
Q ss_pred CcEEEEEEcccCcCCceEEEEEEEeCce
Q psy2166 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYG 386 (805)
Q Consensus 359 ~~~~~l~i~~v~~~d~G~Y~C~a~n~~g 386 (805)
.....|.|.++..+|+|.|+|.|.|..+
T Consensus 141 ~~~~~L~i~~v~~~D~G~Y~C~a~n~~~ 168 (184)
T 2gi7_A 141 WYRASFPIITVTAAHSGTYRCYSFSSRD 168 (184)
T ss_dssp EEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred CceEEEEEccCCccCCeEEEEEEEeCCC
Confidence 1223588999999999999999999764
|
| >2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-18 Score=171.66 Aligned_cols=168 Identities=14% Similarity=0.189 Sum_probs=121.6
Q ss_pred cCCCCceecCCCcEEEEEEEecCCCCC-ceEEEEECCEecC---------C----CCceE----------EEecCcEEEE
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPKNDPN-LKIEWIFNGKPLE---------L----GSRFK----------TTADFGFVTL 126 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~k~g~~i~---------~----~~~~~----------~~~~~~~~~L 126 (805)
..+..+.+.+|+.++|.|.+. +.+. +.|.|+|++.... . ..++. +..++ .|
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~--~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~---~L 79 (231)
T 2pet_A 5 SVPPLVEVMRGKSVILDCTPT--GTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQG---RL 79 (231)
T ss_dssp CCCSEEEEETTCCEEECCCCB--SCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTC---CE
T ss_pred cCCCcEEEEcCCCEEEecccC--CCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCc---eE
Confidence 345578899999999999998 5664 8999998654321 1 11222 33333 49
Q ss_pred EEcccccCCCeEEEEEEEeCC-eeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCce
Q psy2166 127 DLTEVYDRDQGIYTCRAWNLA-GETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQF 205 (805)
Q Consensus 127 ~I~~~~~~D~G~Y~C~a~n~~-g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 205 (805)
.|.+++.+|+|.|+|.+.+.. +.......|.|..++ ..|.+
T Consensus 80 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p--------------------------------------~~~~~ 121 (231)
T 2pet_A 80 VLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKP--------------------------------------EATEV 121 (231)
T ss_dssp EESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCC--------------------------------------CCCEE
T ss_pred EEcccCcccCceEEEEEEecCCCceEEEEEEEEEecC--------------------------------------CCcEE
Confidence 999999999999999999986 777778888887654 22444
Q ss_pred ecccccccccCCCceE-EEEEEEeeCCCCCeEEEEEECCEEccCCC----cEEEEEEc-----C----eEEEEEcCCCCc
Q psy2166 206 TSEFQHLSNLSEGEIA-HFEASLIPVGDQTMTVEFLYNGKPIEASH----RIRTVHAF-----G----MVVLEILGTKIE 271 (805)
Q Consensus 206 ~~~~~~~~~v~~g~~~-~l~C~~~~~~~p~~~i~W~k~g~~l~~~~----~~~~~~~~-----~----~~~L~i~~~~~~ 271 (805)
...+... .+.+|+.+ +|.|.+. .+.|.+.+.|+|+|..+.... ++.+.... + ...|.|.....+
T Consensus 122 ~~~~~~~-~~~~g~~~~~l~C~~~-~~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~d 199 (231)
T 2pet_A 122 SPNKGTL-SVMEDSAQEIATCNSR-NGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDD 199 (231)
T ss_dssp EECCSSC-CTTCCSEEEEEEEEEE-EEBSCCEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGG
T ss_pred ecCCcce-eecCCCceEEEEEEeE-CcccCCEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhh
Confidence 4444333 36788887 9999874 367889999999999987665 44433211 1 256888866667
Q ss_pred ccEEEEEEEEcC
Q psy2166 272 DTGVYTCRATNK 283 (805)
Q Consensus 272 d~G~Y~C~~~n~ 283 (805)
|+|.|+|.|.|.
T Consensus 200 d~g~Y~C~a~n~ 211 (231)
T 2pet_A 200 RDASFHCAAHYS 211 (231)
T ss_dssp GGCEEEEEEEEE
T ss_pred CCceEEEEEEcC
Confidence 799999999994
|
| >2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-18 Score=171.32 Aligned_cols=189 Identities=20% Similarity=0.249 Sum_probs=128.2
Q ss_pred cccCCCeEEEEEEEeeCCCC--CcEEEEEECC--EEc-----------------cCCCceEEEee--CCEEEEEEccCCC
Q psy2166 507 QLKEGQSAHFEARLTPVTDP--DLVVEWFYNG--KKL-----------------PHGHRYRTFHD--FGIVILDILYCYE 563 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~p--~~~v~W~~~g--~~l-----------------~~~~~~~~~~~--~~~~~L~i~~v~~ 563 (805)
.+.+|++++|.|.+. +.| .+.+.|+|++ ..+ ....|+.+..+ .+...|.|.+++.
T Consensus 13 ~v~~G~~v~L~C~~~--g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 90 (247)
T 2ghw_B 13 VVQPGKSLRLSCAAS--GFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA 90 (247)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred EEecCCcEEEEEEec--cccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCH
Confidence 489999999999999 555 6789999842 111 12357766553 4567899999999
Q ss_pred CCCEEEEEEEEcCCcceE--EEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEE
Q psy2166 564 ENSGVYECRATNKYGSDV--TKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 641 (805)
Q Consensus 564 ~d~G~Y~C~a~n~~g~~~--~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 641 (805)
+|+|.|+|.|.|..+... ..+.|.|...+.. .+
T Consensus 91 ~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~--------------------------------------------~~- 125 (247)
T 2ghw_B 91 EDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGG--------------------------------------------SG- 125 (247)
T ss_dssp GGCEEEEEEEEETTEEEEECCCEEEEECSCC-------------------------------------------------
T ss_pred HHCEEEEEeeeccCCccccCCceEEEEeccccc--------------------------------------------cc-
Confidence 999999999998732211 1223333322110 00
Q ss_pred EEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCC
Q psy2166 642 YECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGD 721 (805)
Q Consensus 642 Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~ 721 (805)
. + .+.-. ..+|.+...+... .+.+|++++|.|.+. |.
T Consensus 126 -------~-~------~~~~~--------------------------~~~~~~~~~~~~~-~v~~G~~v~L~C~~~--~~ 162 (247)
T 2ghw_B 126 -------G-G------GSGGG--------------------------GSETTLTQSPATL-SLSPGERATLSCRAS--QS 162 (247)
T ss_dssp ------------------------------------------------CCCCEEEECSEE-EECTTSCEEEEEEES--SC
T ss_pred -------c-c------ccCCC--------------------------CcceEEEccCCEE-EecCCCcEEEEEEeC--CC
Confidence 0 0 00000 0355666666666 899999999999998 88
Q ss_pred CCeEEEEEE--CCEEc------------cCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccE-EEEEEEEEE
Q psy2166 722 QTMTVEFLY--NGKPI------------EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA-EISVNLECV 785 (805)
Q Consensus 722 p~~~v~W~~--~g~~l------------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~ 785 (805)
|.+.|.|+| +|..+ ....++.+..+....+|+|.+++.+|+|.|+|.|.|..+.. ...++|.|.
T Consensus 163 ~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~~t~l~V~ 241 (247)
T 2ghw_B 163 VRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQGTKVEVK 241 (247)
T ss_dssp CTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred ccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcCCEEEEEC
Confidence 989999999 66543 12456666556667789999999999999999999965433 234466665
|
| >1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=9.2e-19 Score=175.75 Aligned_cols=192 Identities=16% Similarity=0.159 Sum_probs=126.1
Q ss_pred cccCCCeEEEEEEEeeCCCCCcEEEEEEC--CEE---cc-------------CCCceEEEee--CCEEEEEEccCCCCCC
Q psy2166 507 QLKEGQSAHFEARLTPVTDPDLVVEWFYN--GKK---LP-------------HGHRYRTFHD--FGIVILDILYCYEENS 566 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~p~~~v~W~~~--g~~---l~-------------~~~~~~~~~~--~~~~~L~i~~v~~~d~ 566 (805)
.+.+|++++|.|.+.+.+.+.+.+.|+|+ |.. +. ...|+.+..+ ++...|.|.+++.+|+
T Consensus 11 ~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~Ds 90 (257)
T 1f3r_B 11 LVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDT 90 (257)
T ss_dssp EECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTTCC
T ss_pred cccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCcccC
Confidence 38999999999999942223789999985 221 10 1356766553 4567899999999999
Q ss_pred EEEEEEEEcCCcce------E---EEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCC
Q psy2166 567 GVYECRATNKYGSD------V---TKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 637 (805)
Q Consensus 567 G~Y~C~a~n~~g~~------~---~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~ 637 (805)
|.|+|.|.|..|.. . ..+.|.|...+.. .|
T Consensus 91 G~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~-----~~------------------------------------ 129 (257)
T 1f3r_B 91 GTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGG-----SG------------------------------------ 129 (257)
T ss_dssp EEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCS-----SC------------------------------------
T ss_pred EEEEEEEcccccCccccccccccCCceEEEEEeCCcc-----cc------------------------------------
Confidence 99999999976520 0 1112222221100 00
Q ss_pred CcEEEEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEe
Q psy2166 638 NSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLI 717 (805)
Q Consensus 638 d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~ 717 (805)
.+ ..+. ...+|.+...+... .+.+|++++|.|.+.
T Consensus 130 -~~--------~~~~-----------------------------------~~~~~~~~~~p~~~-~v~~G~~v~L~C~~~ 164 (257)
T 1f3r_B 130 -GG--------GSGG-----------------------------------GGSDIKLTQSPSLL-SASVGDRVTLSCKGS 164 (257)
T ss_dssp -CS--------SSCC-----------------------------------CCCEECSCEETSEE-CCCTTCCEEEEEECS
T ss_pred -cc--------ccCC-----------------------------------CccceEEEccCCEE-EEcCCCCEEEEEEEC
Confidence 00 0000 00123333344555 789999999999998
Q ss_pred ecCCCCeEEEEEE--CCEEcc------------CCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEE
Q psy2166 718 PVGDQTMTVEFLY--NGKPIE------------ASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783 (805)
Q Consensus 718 ~~g~p~~~v~W~~--~g~~l~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 783 (805)
+.|.+.|.|+| +|..+. ...++.+..+++...|+|.+++.+|+|.|+|.|.|........+.|+
T Consensus 165 --~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g~gt~l~ 242 (257)
T 1f3r_B 165 --QNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFGAGTKLE 242 (257)
T ss_dssp --SCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEECCCCEEC
T ss_pred --CcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeECCCEEEE
Confidence 88889999999 665331 13567665566677999999999999999999999752222344666
Q ss_pred EEE
Q psy2166 784 CVV 786 (805)
Q Consensus 784 V~~ 786 (805)
|..
T Consensus 243 V~~ 245 (257)
T 1f3r_B 243 LKA 245 (257)
T ss_dssp CSS
T ss_pred EeC
Confidence 643
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=175.42 Aligned_cols=258 Identities=13% Similarity=0.076 Sum_probs=101.5
Q ss_pred ccCCCceEEEEEEEeeCCCCCeEEEEEE--CCEEc-cCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEE
Q psy2166 214 NLSEGEIAHFEASLIPVGDQTMTVEFLY--NGKPI-EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 290 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~p~~~i~W~k--~g~~l-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~ 290 (805)
.+.+|+++.|+|.+. ...+..+.|.- .+..+ .... ....|.|.+++.+ |.|+|.+.......+..
T Consensus 10 ~V~~G~sv~l~Cs~~--c~~p~~~~~~t~l~~~~~~~~g~--------~~~~~~l~~v~~~--~~y~C~~~~~~~~~~~~ 77 (291)
T 1mq8_A 10 ILPRGGSVLVTCSTS--CDQPKLLGIETPLPKKELLLPGN--------NRKVYELSNVQED--SQPMCYSNCPDGQSTAK 77 (291)
T ss_dssp EECTTCEEEEEEEEC--CSSCSEEEEECSSCCCCCCCSCS--------SEEEEEEESCCSC--CCCEEEEECSSCEEEEE
T ss_pred EEcCCCeEEEEEeCC--CCCCccceEEecCCCcccccCCC--------ceEEEEEEecccC--CeEEEEEEcCCccEEEE
Confidence 488999999999983 22223488863 12111 1111 1235788888754 46999998655556777
Q ss_pred EEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCc--EEEEEECCEEccCCCceEEEEeCcEEEEEEcc
Q psy2166 291 VNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPEL--KVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAY 368 (805)
Q Consensus 291 ~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~--~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~ 368 (805)
+.+.|...+ ..+.+. +.+. .+.+|+.++|.|.+.+ +.|.. .|+|+|+++.+..... .......+|.+..
T Consensus 78 v~l~V~~~P--~~v~I~--~~~~-~~~~G~~~~LtC~v~g-~~P~~~l~itW~kg~~~l~~~~~---~~~~~~~~l~~~~ 148 (291)
T 1mq8_A 78 TFLTVYWTP--ERVELA--PLPS-WQPVGKNLTLRCQVEG-GAPRANLTVVLLRGEKELKREPA---VGEPAEVTTTVLV 148 (291)
T ss_dssp CEEEECBCC--SCCCBC--CCCS-BCCSSCCCEEEEEECC-CBSTTTEEEEEESSSSEEEEEEC---CBTTEEEEEECCC
T ss_pred EEEEEecCC--CCCEEe--cCCc-cccCCCCEEEEEEecC-ccCCCCcEEEEEECCEEeecccC---CCCCceEEEEeee
Confidence 788887533 222222 2222 2788999999999985 55654 6999999988753221 1112334677777
Q ss_pred cCcCCceEEEEEEEeCcee--------eEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCcee
Q psy2166 369 VQSHDSGEYVCRAWNKYGE--------DFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFI 440 (805)
Q Consensus 369 v~~~d~G~Y~C~a~n~~g~--------~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (805)
...+|.+.|+|+|.|..+. ......|.|
T Consensus 149 ~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V-------------------------------------------- 184 (291)
T 1mq8_A 149 RRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQT-------------------------------------------- 184 (291)
T ss_dssp SSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC--------------------------------------------
T ss_pred eeccCCceEEEEEEecCCccCCccccccccceEEEE--------------------------------------------
Confidence 7777778999999987542 111223333
Q ss_pred eeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEE
Q psy2166 441 TQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARL 520 (805)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v 520 (805)
.++|.....+.....+.+|+.++|+|.+
T Consensus 185 ----------------------------------------------------~~~P~~~~~~~~p~~l~eG~~v~l~C~~ 212 (291)
T 1mq8_A 185 ----------------------------------------------------FVLPATPPQLVSPRVLEVDTQGTVVCSL 212 (291)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------------------------EecCCCCceecCCcCccCCCeEEEEEEc
Confidence 2332211111001137899999999999
Q ss_pred eeCCCCC--cEEEEEECCEEccCCCceEEEeeCCEEEEEEc-cCCCCC--CEEEEEEEEcCCcceEEEEEEEEeeeee
Q psy2166 521 TPVTDPD--LVVEWFYNGKKLPHGHRYRTFHDFGIVILDIL-YCYEEN--SGVYECRATNKYGSDVTKASLKCVSKTN 593 (805)
Q Consensus 521 ~~~g~p~--~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~-~v~~~d--~G~Y~C~a~n~~g~~~~~~~l~V~~~~~ 593 (805)
.++ +|. +.++|+++|+.+.... ..+++....... .+..+| .+.|+|.|.|.........+|.|...+.
T Consensus 213 ~g~-~P~~~~~v~w~~~g~~l~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~~~ 285 (291)
T 1mq8_A 213 DGL-FPVSEAQVHLALGDQRLNPTV----TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPA 285 (291)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCC-CCCcccEEEEEECCEecCcee----eecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcCCC
Confidence 942 343 4799999999987532 112222112111 112333 6678899988555566677788876443
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-18 Score=169.61 Aligned_cols=183 Identities=14% Similarity=0.129 Sum_probs=126.4
Q ss_pred CcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEE
Q psy2166 62 TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTC 141 (805)
Q Consensus 62 ~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 141 (805)
...+|.+...+.. .|.+|++|+|.|.+. .+...+.|+|+|..+..... ..........|.|.+++.+|+|.|+|
T Consensus 4 ~~~kP~i~~~P~~--~v~~G~~VtL~C~~~---~~~~~~~w~k~g~~~~~~~~-~~~~~~~~~~L~I~~v~~~DsG~Y~C 77 (242)
T 1p6f_A 4 TLPKPFIWAEPHF--MVPKEKQVTICCQGN---YGAVEYQLHFEGSLFAVDRP-KPPERINKVKFYIPDMNSRMAGQYSC 77 (242)
T ss_dssp CCCCCEEEEESCS--EEETTCCEEEEEECC---TTCCEEEEEETTEEEEEECC-SSCTTCCEEEEEECSCCGGGCEEEEE
T ss_pred CCCCCEEEeeCCC--ccCCCCcEEEEEeeC---CCCcEEEEEECCCccccccc-cccCCcceeEEEecCCCcccCeEEEE
Confidence 3567888776653 899999999999987 34568999999987642100 00111234589999999999999999
Q ss_pred EEEeCCeeE--EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCc
Q psy2166 142 RAWNLAGET--FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGE 219 (805)
Q Consensus 142 ~a~n~~g~~--~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~ 219 (805)
.+.+..+.. .....|.|.... .+|.+...+.. .+.+|+
T Consensus 78 ~~~~~~~~s~~S~~~~L~V~~~~--------------------------------------~~P~i~~~p~~--~v~~G~ 117 (242)
T 1p6f_A 78 IYRVGELWSEPSNLLDLVVTEMY--------------------------------------DTPTLSVHPGP--EVISGE 117 (242)
T ss_dssp EEEETTEECCCCCCEEEEEECCS--------------------------------------CCCEEEEESCS--EEETTC
T ss_pred EEecCCccccCCcceEEEeeccc--------------------------------------CCCceEccCCC--ccCCCC
Confidence 998865432 234555554311 23555544422 378999
Q ss_pred eEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCC-e--eEEEEEEEEEe
Q psy2166 220 IAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKW-G--QAEISVNLECV 296 (805)
Q Consensus 220 ~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~-g--~~~~~~~l~v~ 296 (805)
.++|.|.+ .+. .+.+.|+|+|..+.. ..........|.|.+++.+|+|.|+|.+.|.. . ..+..+.|.|.
T Consensus 118 ~vtL~C~~--~~~-~~~~~w~k~g~~~~~----~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~ 190 (242)
T 1p6f_A 118 KVTFYCRL--DTA-TSMFLLLKEGRSSHV----QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT 190 (242)
T ss_dssp EEEEEEEC--TTS-CSEEEEEECSSSCEE----EEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEE
T ss_pred cEEEEEec--CCC-CCEEEEEECCCccCc----cccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEe
Confidence 99999987 443 469999999976643 11233446789999999999999999999864 1 22445666665
Q ss_pred c
Q psy2166 297 D 297 (805)
Q Consensus 297 ~ 297 (805)
.
T Consensus 191 ~ 191 (242)
T 1p6f_A 191 G 191 (242)
T ss_dssp C
T ss_pred c
Confidence 4
|
| >2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=8.9e-18 Score=167.64 Aligned_cols=190 Identities=17% Similarity=0.208 Sum_probs=125.9
Q ss_pred CceecCCCcEEEEEEEecCCCC--CceEEEEECC--Eec-----------------CCCCceEEEec--CcEEEEEEccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDP--NLKIEWIFNG--KPL-----------------ELGSRFKTTAD--FGFVTLDLTEV 131 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p--~~~v~W~k~g--~~i-----------------~~~~~~~~~~~--~~~~~L~I~~~ 131 (805)
.+.+.+|+.++|.|.+. +.| .+.|.|+|+. ..+ ....|+.+..+ ++..+|+|.++
T Consensus 11 ~~~v~~G~~v~L~C~~~--g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 88 (247)
T 2ghw_B 11 GGVVQPGKSLRLSCAAS--GFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSL 88 (247)
T ss_dssp CEEECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CEEEecCCcEEEEEEec--cccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcC
Confidence 57899999999999998 454 6789999942 111 12357877664 45778999999
Q ss_pred ccCCCeEEEEEEEeCCeeE--EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccc
Q psy2166 132 YDRDQGIYTCRAWNLAGET--FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEF 209 (805)
Q Consensus 132 ~~~D~G~Y~C~a~n~~g~~--~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 209 (805)
+.+|+|.|+|.|.|..+.. .....|.|...+... +. ........+|.+...+
T Consensus 89 ~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~-----~~---------------------~~~~~~~~~~~~~~~~ 142 (247)
T 2ghw_B 89 RAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGS-----GG---------------------GGSGGGGSETTLTQSP 142 (247)
T ss_dssp CGGGCEEEEEEEEETTEEEEECCCEEEEECSCC--------------------------------------CCCCEEEEC
T ss_pred CHHHCEEEEEeeeccCCccccCCceEEEEecccccc-----cc---------------------cccCCCCcceEEEccC
Confidence 9999999999999973322 233466665432100 00 0000001334455444
Q ss_pred ccccccCCCceEEEEEEEeeCCCCCeEEEEEE--CCEEcc------------CCCcEEEEEEcCeEEEEEcCCCCcccEE
Q psy2166 210 QHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY--NGKPIE------------ASHRIRTVHAFGMVVLEILGTKIEDTGV 275 (805)
Q Consensus 210 ~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k--~g~~l~------------~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 275 (805)
... .+.+|++++|.|.+ .+.|.+.+.|+| +|..+. ...++.........+|.|.+++.+|+|.
T Consensus 143 ~~~-~v~~G~~v~L~C~~--~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 219 (247)
T 2ghw_B 143 ATL-SLSPGERATLSCRA--SQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAV 219 (247)
T ss_dssp SEE-EECTTSCEEEEEEE--SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEE
T ss_pred CEE-EecCCCcEEEEEEe--CCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEE
Confidence 443 47899999999998 677778999999 565431 1345544444456789999999999999
Q ss_pred EEEEEEcCCeeE-EEEEEEEE
Q psy2166 276 YTCRATNKWGQA-EISVNLEC 295 (805)
Q Consensus 276 Y~C~~~n~~g~~-~~~~~l~v 295 (805)
|+|.|.|..... .....|.|
T Consensus 220 Y~C~a~~~~~~~~g~~t~l~V 240 (247)
T 2ghw_B 220 YYCQQRSNWPPTFGQGTKVEV 240 (247)
T ss_dssp EEEEECSSSSCEECCCEEEEE
T ss_pred EEEEEccCCCceEcCCEEEEE
Confidence 999999854332 23334444
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.8e-18 Score=164.15 Aligned_cols=173 Identities=10% Similarity=0.016 Sum_probs=117.3
Q ss_pred CcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCce-EEEecCcEEEEEEcccccCCCeEEE
Q psy2166 62 TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRF-KTTADFGFVTLDLTEVYDRDQGIYT 140 (805)
Q Consensus 62 ~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~-~~~~~~~~~~L~I~~~~~~D~G~Y~ 140 (805)
.+.+|.+...+. ..+.+|++++|.|.+. .+.+.|.|+|+|..+....+. ..........|.|.+++.+|+|.|+
T Consensus 5 ~~~~P~i~~~p~--~~v~~G~~v~L~C~~~---~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~ 79 (201)
T 1nkr_A 5 VHRKPSLLAHPG--PLVKSEETVILQCWSD---VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYR 79 (201)
T ss_dssp --CCCEEEEESC--SEEETTCCEEEEEEES---SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEE
T ss_pred cCCCCeEEEEcC--CccCCCCcEEEEEecc---CCCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEE
Confidence 356677765553 6789999999999987 467799999999765432111 1111123458999999999999999
Q ss_pred EEEEeCCe-----eEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccccccccc
Q psy2166 141 CRAWNLAG-----ETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNL 215 (805)
Q Consensus 141 C~a~n~~g-----~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v 215 (805)
|.+.+... .......|.|.... .+|.+...+.. .+
T Consensus 80 C~a~~~~~~~~~~~~s~~~~l~V~~~~--------------------------------------~~p~i~~~p~~--~v 119 (201)
T 1nkr_A 80 CYGSVTHSPYQVSAPSDPLDIVIIGLY--------------------------------------EKPSLSAQPGP--TV 119 (201)
T ss_dssp EEEEBTTBTTCCCCCCCCEEEEEECSS--------------------------------------CCCEEEEESCS--EE
T ss_pred EeEecCCCCccccCCCCCEEEEeeccC--------------------------------------CCCceecCCCC--cc
Confidence 99987531 22334556665321 34556554442 47
Q ss_pred CCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEc-CeEEEEEcCCCCcccEEEEEEEEcCC
Q psy2166 216 SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF-GMVVLEILGTKIEDTGVYTCRATNKW 284 (805)
Q Consensus 216 ~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~n~~ 284 (805)
.+|+.++|.|.+ .+ +.+.+.|+|+|..+............ ....|.|.+++ |+|.|+|.|.+..
T Consensus 120 ~~G~~v~L~C~~--~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~ 184 (201)
T 1nkr_A 120 LAGENVTLSCSS--RS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFHD 184 (201)
T ss_dssp CTTCEEEEEEEE--SS-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred CCCCeEEEEEeC--CC-CCceEEEEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence 899999999997 44 45789999999876533211111111 14689999998 9999999998753
|
| >1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-18 Score=163.38 Aligned_cols=168 Identities=12% Similarity=0.111 Sum_probs=119.7
Q ss_pred CCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEE
Q psy2166 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 280 (805)
Q Consensus 201 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 280 (805)
.+|.|...+.. .+.+|++++|.|.+ .+ +.+.+.|+|+|..+...... .........|.|.+++.+|+|.|+|.+
T Consensus 3 ~~P~i~~~p~~--~v~~G~~v~L~C~~--~~-~~~~~~w~k~g~~~~~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 76 (188)
T 1oll_A 3 PKPFIWAEPHF--MVPKEKQVTICCQG--NY-GAVEYQLHFEGSLFAVDRPK-PPERINKVKFYIPDMNSRMAGQYSCIY 76 (188)
T ss_dssp CCCEEEEESCS--EEETTCCEEEEEEC--CT-TCCEEEEEETTEEEEEECCS-SCTTCCEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCEEEeecCC--cCCCCCCEEEEEec--CC-CCCEEEEEECCCcccccccc-cCCCcceeEEEeCcCCcccCeEEEEEe
Confidence 35777776665 48899999999987 33 34789999999876421000 001123468999999999999999999
Q ss_pred EcCCeeE--EEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEe
Q psy2166 281 TNKWGQA--EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD 358 (805)
Q Consensus 281 ~n~~g~~--~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~ 358 (805)
.|..+.. +..+.|.|.... .+|.+...+. . .+.+|+.++|.|.+. + +.+.+.|+|+|..+.. .....
T Consensus 77 ~~~~~~~~~s~~~~l~V~~~~--~~p~i~~~p~-~-~v~~G~~v~L~C~~~--~-~~~~~~w~k~g~~~~~----~~~~~ 145 (188)
T 1oll_A 77 RVGELWSEPSNLLDLVVTEMY--DTPTLSVHPG-P-EVISGEKVTFYCRLD--T-ATSMFLLLKEGRSSHV----QRGYG 145 (188)
T ss_dssp EETTEECCCCCCEEEEEESCS--CCCEEEEESC-S-EEETTCEEEEEEECS--S-SCSEEEEEEESSSCEE----EEEEC
T ss_pred cCCCCCCCCCCceEEEecccC--CCCeEEECCC-C-ccccCCEEEEEEEcC--C-CCCEEEEEECCccccc----cccCC
Confidence 9875533 344566665321 3566654442 2 378999999999984 3 4578999999976643 11223
Q ss_pred CcEEEEEEcccCcCCceEEEEEEEeCc
Q psy2166 359 FGFVVMDIAYVQSHDSGEYVCRAWNKY 385 (805)
Q Consensus 359 ~~~~~l~i~~v~~~d~G~Y~C~a~n~~ 385 (805)
.....|.|.++..+|+|.|+|.|.|..
T Consensus 146 ~~~~~L~I~~v~~~d~G~Y~C~a~n~~ 172 (188)
T 1oll_A 146 KVQAEFPLGPVTTAHRGTYRCFGSYNN 172 (188)
T ss_dssp SSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred CceeEEEECCCCcCCCcEEEEEEEcCC
Confidence 345579999999999999999999864
|
| >1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H | Back alignment and structure |
|---|
Probab=99.77 E-value=5.6e-18 Score=169.70 Aligned_cols=135 Identities=20% Similarity=0.200 Sum_probs=101.5
Q ss_pred CCEEEEEeccCCCCCcEEEEEEEEeCCcc---e--EEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecC
Q psy2166 624 FGIVILDILYCYEENSGVYECRATNKYGS---D--VTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEF 698 (805)
Q Consensus 624 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~---~--~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~ 698 (805)
++...|.|.+++.+|+|.|+|.|.|..|. . ...+.|.|. .+|.+...+
T Consensus 76 ~~~~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~---------------------------~~~~v~~~p 128 (256)
T 1nqb_A 76 SSTAYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVS---------------------------SDIELTQTP 128 (256)
T ss_dssp TTEEEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEEC---------------------------CCCCEEEEC
T ss_pred CCEEEEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeec---------------------------ccccEEecC
Confidence 34567999999999999999999998763 1 123566665 346666667
Q ss_pred CcccccCCCCeEEEEEEEeecCCCCe-----EEEEEE--CCEEcc------------CCCCeEEEeeCcEEEEEEcCCCC
Q psy2166 699 QHLSNLSEGEIAHFEASLIPVGDQTM-----TVEFLY--NGKPIE------------ASHRIRTVHAFGMVVLEILGTKI 759 (805)
Q Consensus 699 ~~~~~v~~G~~~~l~C~~~~~g~p~~-----~v~W~~--~g~~l~------------~~~~~~~~~~~~~~~L~i~~v~~ 759 (805)
... .+.+|++++|.|.+. |.|.+ .|.|+| +|..+. ...++.+........|+|.+++.
T Consensus 129 ~~~-~v~~G~~v~L~C~~~--~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 205 (256)
T 1nqb_A 129 LSL-PVSLGDQASISCRSS--QSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEA 205 (256)
T ss_dssp SEE-EECTTCCEEEEEEES--SCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred cEE-EEecCCcEEEEeEec--CcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCCh
Confidence 776 899999999999998 88775 999999 665431 13567666666778999999999
Q ss_pred CCCEEEEEEEEcCCcc-EEEEEEEEEEEeC
Q psy2166 760 EDTGVYTCRATNKWGQ-AEISVNLECVVWS 788 (805)
Q Consensus 760 ~d~G~Y~C~a~N~~G~-~~~~~~l~V~~~~ 788 (805)
+|+|.|+|.|.|..+. -...+.|.|...+
T Consensus 206 ~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~~ 235 (256)
T 1nqb_A 206 EDLGVYYCFQGSHVPYTFGGGTKLEIKRAA 235 (256)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEECC--
T ss_pred HHCEEEEEEEccCCceEECCCEEEEEECCC
Confidence 9999999999996543 2334567775433
|
| >3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-17 Score=169.38 Aligned_cols=205 Identities=13% Similarity=0.084 Sum_probs=129.8
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECC-----EEc---------cCCCceEEEeeCCEEEEEEcc
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNG-----KKL---------PHGHRYRTFHDFGIVILDILY 560 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g-----~~l---------~~~~~~~~~~~~~~~~L~i~~ 560 (805)
.+.+...+... .+.+|++++|.|.+. +.|.+.+.|+|++ +.+ ....|+.+..+++...|.|.+
T Consensus 12 ~~~v~~~p~~~-~v~~G~~v~L~C~~~--~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 88 (276)
T 3auv_A 12 DIQMTQSPSSL-SASVGDRVTITCRAS--QDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISS 88 (276)
T ss_dssp CCCEEEECSEE-ECCTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred ceeEEeCCCeE-EEcCCCCEEEEeEcC--CCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEcc
Confidence 34455444443 489999999999998 6778899999854 122 124577776667777899999
Q ss_pred CCCCCCEEEEEEEEcCCcce-EEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCc
Q psy2166 561 CYEENSGVYECRATNKYGSD-VTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENS 639 (805)
Q Consensus 561 v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~ 639 (805)
++.+|+|.|.|.|.|..+.. ...+.|.|...+... . .
T Consensus 89 v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~---------------------------------~---------~ 126 (276)
T 3auv_A 89 LQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGS---------------------------------I---------E 126 (276)
T ss_dssp CCGGGCEEEEEEECSSSSCCCCCCEEEEC---------------------------------------------------
T ss_pred CChhhCEEEEEEEecCCcccccCCEEEEEecCCCcc---------------------------------c---------c
Confidence 99999999999999865431 112333333221100 0 0
Q ss_pred EEEEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeec
Q psy2166 640 GVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPV 719 (805)
Q Consensus 640 G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~ 719 (805)
.+.... .|+.+...+.+. .+.+|++++|.|.+.
T Consensus 127 ------------------~~~~~~--------------------------~p~~~~~~p~~~-~v~~G~~v~L~C~~~-- 159 (276)
T 3auv_A 127 ------------------GRSGGG--------------------------GSEVQLVESGGG-LVQPGGSLRLSCAAS-- 159 (276)
T ss_dssp ----------------------------------------------------CCEEEEECCE-EECTTCCEEEEEEEE--
T ss_pred ------------------cccccc--------------------------CcceEEECCCce-EecCCCeEEEEEEec--
Confidence 000000 122222334455 899999999999998
Q ss_pred CCC--CeEEEEEECC--EEc-----------------cCCCCeEEEee--CcEEEEEEcCCCCCCCEEEEEEEEcCC---
Q psy2166 720 GDQ--TMTVEFLYNG--KPI-----------------EASHRIRTVHA--FGMVVLEILGTKIEDTGVYTCRATNKW--- 773 (805)
Q Consensus 720 g~p--~~~v~W~~~g--~~l-----------------~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~--- 773 (805)
|.| .+.|.|+|++ ..+ ....++.+..+ .+...|.|.+++.+|+|.|+|.|.|..
T Consensus 160 g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~~~~ 239 (276)
T 3auv_A 160 GFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFFLPY 239 (276)
T ss_dssp SSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSSTTC
T ss_pred CccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCcCCc
Confidence 776 5899999963 211 12356766554 456789999999999999999999983
Q ss_pred cc--EEEEEEEEEEEeCCCc
Q psy2166 774 GQ--AEISVNLECVVWSPSQ 791 (805)
Q Consensus 774 G~--~~~~~~l~V~~~~~~~ 791 (805)
+. -...++|+|...++..
T Consensus 240 ~~~~fg~gt~l~V~~~~~~~ 259 (276)
T 3auv_A 240 AMDYWGQGTLVTVSSASAAA 259 (276)
T ss_dssp SCCCBCCCEEEEEC------
T ss_pred CceEECCCEEEEEccccccc
Confidence 21 2234678887666553
|
| >1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.8e-18 Score=165.65 Aligned_cols=169 Identities=15% Similarity=0.205 Sum_probs=121.7
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEEC--CEEc------------cCCCceEEEEeCcEEEEEEcccCcCCceEEEEEE
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFHN--GKPI------------FHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRA 381 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~--g~~l------------~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a 381 (805)
+.+|+.++|.|.+. +.|.+.|.|+|+ |..+ ....++.+...+....|.|.+++.+|+|.|.|.|
T Consensus 12 v~~G~~v~L~C~~~--~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 89 (210)
T 1lk3_L 12 VSPGEKLTISCKAS--ESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQQ 89 (210)
T ss_dssp ECTTSCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred EcCCCCEEEEeeCC--CccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEEEEE
Confidence 88999999999997 777788999984 2222 1135676666667778999999999999999999
Q ss_pred EeCceeeEE-EEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEE
Q psy2166 382 WNKYGEDFT-RATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEAR 460 (805)
Q Consensus 382 ~n~~g~~~~-~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (805)
.|..+.... ...|.|...
T Consensus 90 ~~~~~~~~~~~~~l~V~~~------------------------------------------------------------- 108 (210)
T 1lk3_L 90 SWNGPLTFGAGTKLELKRA------------------------------------------------------------- 108 (210)
T ss_dssp CSSSSCEECCCEEEEECCC-------------------------------------------------------------
T ss_pred EcCCCceeCCCEEEEEcCC-------------------------------------------------------------
Confidence 988764332 235555311
Q ss_pred EeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCC-cEEEEEECCEEc
Q psy2166 461 LTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPD-LVVEWFYNGKKL 539 (805)
Q Consensus 461 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~-~~v~W~~~g~~l 539 (805)
..+|.+....+... +.+|+.++|.|.+.+. .|. +.|+|+|||+.+
T Consensus 109 --------------------------------~~~P~v~~~~~~~~-~~~g~~v~l~C~~~g~-~p~~~~v~W~k~g~~~ 154 (210)
T 1lk3_L 109 --------------------------------DAAPTVSIFPPSTE-QLATGGASVVCLMNNF-YPRDISVKWKIDGTER 154 (210)
T ss_dssp --------------------------------CBCCEEEEECCCHH-HHTTTEEEEEEEEEEE-BSSCCEEEEEETTEEC
T ss_pred --------------------------------CcCCeEEEECCchh-hccCCcEEEEEEEEeE-eCCceEEEEEeCCccC
Confidence 23566666555444 4589999999999953 344 599999999998
Q ss_pred cCCCce--EEE-eeCC----EEEEEEccCCCCCCEEEEEEEEcCCcceE
Q psy2166 540 PHGHRY--RTF-HDFG----IVILDILYCYEENSGVYECRATNKYGSDV 581 (805)
Q Consensus 540 ~~~~~~--~~~-~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 581 (805)
..+... ... ..++ .+.|.|..+..+|+|.|+|.|.|......
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~ 203 (210)
T 1lk3_L 155 RDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSP 203 (210)
T ss_dssp CTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSC
T ss_pred CCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCe
Confidence 655111 111 1111 24799999999999999999999876543
|
| >3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-18 Score=166.94 Aligned_cols=176 Identities=16% Similarity=0.195 Sum_probs=120.4
Q ss_pred CceecCCCcEEEEEEEecCCC-CCceEEEEECC--Ee-------------c-C--CCCceEEEecCcEEEEEEcccccCC
Q psy2166 75 EFKLGEAQPLHLEAQVEPKND-PNLKIEWIFNG--KP-------------L-E--LGSRFKTTADFGFVTLDLTEVYDRD 135 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~-p~~~v~W~k~g--~~-------------i-~--~~~~~~~~~~~~~~~L~I~~~~~~D 135 (805)
.+.+.+|+.++|.|.+. +. |.+.|.|+|.. .. . . ...|+.+...++..+|.|.+++.+|
T Consensus 9 ~~~v~~G~~v~L~C~~~--~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 86 (218)
T 3s96_B 9 SASFSLGASAKLTCTLN--SQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPED 86 (218)
T ss_dssp EEEEETTSCEEEEEEEC--GGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred cEEECCCCcEEEEEECC--CCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCccc
Confidence 67899999999999998 45 78899999931 10 0 0 1247777767778899999999999
Q ss_pred CeEEEEEEEeCCe-----eEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccc
Q psy2166 136 QGIYTCRAWNLAG-----ETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQ 210 (805)
Q Consensus 136 ~G~Y~C~a~n~~g-----~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 210 (805)
+|.|+|.+.+..| .......|.|...+ ..+|.+...+.
T Consensus 87 ~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~-------------------------------------~~~P~~~~~~~ 129 (218)
T 3s96_B 87 EAIYICGVGDTIKEQFVYVFGGGTKVTVLGQP-------------------------------------KSTPTLTVFPP 129 (218)
T ss_dssp CEEEEEEEEEEETTEEEEEECCCEEEEEESCC-------------------------------------CBCCEEEEECC
T ss_pred CEEEEEEEecCCCCceeEEEcCcEEEEEecCC-------------------------------------CCCceEEeeCC
Confidence 9999999998765 22334566765322 13455554333
Q ss_pred cccccCCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCCCcE-EEEEEcC----eEEEEEcCCCCcccEEEEEEEEcCC
Q psy2166 211 HLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRI-RTVHAFG----MVVLEILGTKIEDTGVYTCRATNKW 284 (805)
Q Consensus 211 ~~~~v~~g~~~~l~C~~~~~~~p~~-~i~W~k~g~~l~~~~~~-~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~n~~ 284 (805)
... +..|+.++|.|.+.. ..|.+ .+.|+|+|..+...... .....++ ...|.|.....+|+|.|+|.|.|..
T Consensus 130 ~~~-~~~~~~v~L~C~~~g-~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~ 207 (218)
T 3s96_B 130 SSE-ELKENKATLVCLISN-FSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEG 207 (218)
T ss_dssp CHH-HHHTTEEEEEEEEEE-EBSSCCEEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETT
T ss_pred Ccc-cccCCcEEEEEEECc-ccCCCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCC
Confidence 332 446789999999852 25656 99999999998753211 1111111 2358888888889999999999998
Q ss_pred eeEEEEE
Q psy2166 285 GQAEISV 291 (805)
Q Consensus 285 g~~~~~~ 291 (805)
+..+.++
T Consensus 208 ~~~~~~~ 214 (218)
T 3s96_B 208 DTVEKSL 214 (218)
T ss_dssp EEEEEEE
T ss_pred Ccccccc
Confidence 7665544
|
| >3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ... | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-18 Score=167.11 Aligned_cols=171 Identities=17% Similarity=0.203 Sum_probs=123.7
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEECC--EEc------------cCCCceEEEEeCcEEEEEEcccCcCCceEEEEEE
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFHNG--KPI------------FHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRA 381 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~g--~~l------------~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a 381 (805)
+.+|+.++|.|.+. +.|.+.|.|+|++ ..+ ....++.+...+....|.|.++..+|+|.|+|.|
T Consensus 13 v~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 90 (213)
T 3d9a_L 13 VTPGNSVSLSCRAS--QSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQ 90 (213)
T ss_dssp ECTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred EeCCCcEEEEEECC--CCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEEEee
Confidence 88999999999997 7778899999853 221 1125677766777788999999999999999999
Q ss_pred EeCceeeEE-EEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEE
Q psy2166 382 WNKYGEDFT-RATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEAR 460 (805)
Q Consensus 382 ~n~~g~~~~-~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (805)
.|..+.... .+.|.|..
T Consensus 91 ~~~~~~~~~~~~~l~V~~-------------------------------------------------------------- 108 (213)
T 3d9a_L 91 SNSWPYTFGGGTKLEIKR-------------------------------------------------------------- 108 (213)
T ss_dssp CSSSSCEECCCEEEEECC--------------------------------------------------------------
T ss_pred ecCCcceeCCCEEEEEec--------------------------------------------------------------
Confidence 998765433 23555531
Q ss_pred EeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCc-EEEEEECCEEc
Q psy2166 461 LTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDL-VVEWFYNGKKL 539 (805)
Q Consensus 461 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~-~v~W~~~g~~l 539 (805)
...+|.+....+... +.+|+.++|.|.+.+. .|.+ .++|+|||..+
T Consensus 109 -------------------------------~~~~p~v~~~~~~~~-~~~g~~~~l~C~~~g~-~p~~~~v~W~k~g~~~ 155 (213)
T 3d9a_L 109 -------------------------------ADAAPTVSIFPPSSE-QLTSGGASVVCFLNNF-YPKDINVKWKIDGSER 155 (213)
T ss_dssp -------------------------------CCBCCEEEEECCCHH-HHHTTEEEEEEEEEEE-BSSCCEEEEEETTEEE
T ss_pred -------------------------------CCCCceeEeECCChh-hcCCCcEEEEEEEeee-cCCceEEEEEcCCCcC
Confidence 123677766555444 4479999999999852 4554 99999999998
Q ss_pred cCCCceEE--E-eeCC----EEEEEEccCCCCCCEEEEEEEEcCCcceEEE
Q psy2166 540 PHGHRYRT--F-HDFG----IVILDILYCYEENSGVYECRATNKYGSDVTK 583 (805)
Q Consensus 540 ~~~~~~~~--~-~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~ 583 (805)
..+..... . ..++ .+.|.|.++..+|+|.|+|.|.|........
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~ 206 (213)
T 3d9a_L 156 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIV 206 (213)
T ss_dssp CTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEE
T ss_pred cceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceE
Confidence 76511110 1 1111 3479999999999999999999987765433
|
| >3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A | Back alignment and structure |
|---|
Probab=99.77 E-value=6.2e-18 Score=157.95 Aligned_cols=163 Identities=18% Similarity=0.251 Sum_probs=119.7
Q ss_pred CceecccccccccCCCceEEEEEEEeeCCCC-CeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEE
Q psy2166 203 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ-TMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 281 (805)
Q Consensus 203 p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p-~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 281 (805)
|.+...+... .+.+|+.+.|.|.+ .+.| .+.+.|+|+|..+..... .+.+.+++.+|+|.|+|.+.
T Consensus 5 p~i~~~p~~~-~v~~G~~v~l~C~~--~~~p~~~~~~W~~~g~~~~~~~~----------~~~~~~~~~~d~G~Y~C~~~ 71 (170)
T 3ry4_A 5 AVLKLEPPWI-NVLQEDSVTLTCQG--ARSPESDSIQWFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQTG 71 (170)
T ss_dssp CEEEEESCCS-EEETTCEEEEEEES--CCCSSSSCEEEEETTEECTTCCS----------SEEEEECCGGGCEEEEEEET
T ss_pred CEEEeCCCCe-EEECCCcEEEEEEe--cCCCCcceEEEEECCeEcccCcc----------ceEEEecccccCeEEEEEEe
Confidence 5566555544 37899999999988 4555 679999999999876533 35667899999999999999
Q ss_pred cCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEeCcE
Q psy2166 282 NKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361 (805)
Q Consensus 282 n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~ 361 (805)
|..... .+.+.|. .++.+...+ .. .+.+|+.+.|.|.+.+ +.|.+.+.|+++|..+.... ..
T Consensus 72 ~~~~s~--~~~l~v~-----~~~~~~~~~-~~-~~~~g~~~~l~C~~~~-~~p~~~~~W~~~g~~~~~~~--------~~ 133 (170)
T 3ry4_A 72 QTSLSD--PVHLTVL-----FEWLVLQTP-HL-EFQEGETIMLRCHSWK-DKPLVKVTFFQNGKSQKFSH--------LD 133 (170)
T ss_dssp TSBCCC--CEEEEEE-----CCSEEEECS-CS-EECTTCCEEEEEEEGG-GCCEEEEEEEETTEEEEEES--------SC
T ss_pred CCCceE--eEEEEEE-----CCceEecCC-Cc-eeecCCeEEEEEECCC-CCCCceEEEEECCeEccccC--------CC
Confidence 754433 4555555 233333332 22 3788999999999952 66779999999998864211 12
Q ss_pred EEEEEcccCcCCceEEEEEEEeCceee-EEEEEEEE
Q psy2166 362 VVMDIAYVQSHDSGEYVCRAWNKYGED-FTRATIKC 396 (805)
Q Consensus 362 ~~l~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V 396 (805)
..|.|.++..+|+|.|+|.|.|..|.. ...+.|.|
T Consensus 134 ~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 134 PTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp CEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred CeEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence 369999999999999999999999863 33455554
|
| >3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-18 Score=143.63 Aligned_cols=93 Identities=22% Similarity=0.420 Sum_probs=86.0
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCC--CeEEEeeCcEEEEEEcCCCCCCCEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH--RIRTVHAFGMVVLEILGTKIEDTGVYTC 767 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 767 (805)
.||+|...+.+. .+.+|+.+.|.|.+. |.|.|.|+|+|||+.+.... ++.+...++..+|.|.+++.+|+|.|+|
T Consensus 4 ~PP~i~~~p~~~-~v~~G~~~~l~C~~~--g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 80 (100)
T 3knb_A 4 IPPKIEALPSDI-SIDEGKVLTVACAFT--GEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTL 80 (100)
T ss_dssp EEEEECCCCSEE-EEETTSEEEEEEEEE--EESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEE
T ss_pred CCCEEEeCCCcE-EEeCCCeEEEEEEEE--EecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEE
Confidence 589999999998 999999999999999 99999999999999997654 6777788888899999999999999999
Q ss_pred EEEcCCccEEEEEEEEEE
Q psy2166 768 RATNKWGQAEISVNLECV 785 (805)
Q Consensus 768 ~a~N~~G~~~~~~~l~V~ 785 (805)
.|.|.+|.++.++.|.|+
T Consensus 81 ~a~N~~G~~~~~~~l~V~ 98 (100)
T 3knb_A 81 SLGNEFGSDSATVNIHIR 98 (100)
T ss_dssp EEEETTEEEEEEEEEEEE
T ss_pred EEEECCCEEEEEEEEEEE
Confidence 999999999999999986
|
| >1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=166.74 Aligned_cols=180 Identities=18% Similarity=0.225 Sum_probs=123.8
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec-----------------CCCCceEEEec--CcEEEEEEccc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL-----------------ELGSRFKTTAD--FGFVTLDLTEV 131 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i-----------------~~~~~~~~~~~--~~~~~L~I~~~ 131 (805)
++.+.+.+|+.++|.|.+.+...+.+.|.|+|+ +..+ ....|+.+..+ ++..+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (256)
T 1nqb_A 7 SGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSL 86 (256)
T ss_dssp CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcC
Confidence 346789999999999999832113679999994 3221 12357777654 46779999999
Q ss_pred ccCCCeEEEEEEEeCCee-----EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCcee
Q psy2166 132 YDRDQGIYTCRAWNLAGE-----TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFT 206 (805)
Q Consensus 132 ~~~D~G~Y~C~a~n~~g~-----~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 206 (805)
+.+|+|.|+|.+.|..|. ......|.|.. +|.+.
T Consensus 87 ~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~-----------------------------------------~~~v~ 125 (256)
T 1nqb_A 87 TSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSS-----------------------------------------DIELT 125 (256)
T ss_dssp CGGGCEEEEEEECCTTSSSSCSEECCCEEEEECC-----------------------------------------CCCEE
T ss_pred ChhhCEEEEEEEeeccCccceeEEcCceeeeecc-----------------------------------------cccEE
Confidence 999999999999998552 12234566542 23333
Q ss_pred cccccccccCCCceEEEEEEEeeCCCCCe-----EEEEEE--CCEEcc------------CCCcEEEEEEcCeEEEEEcC
Q psy2166 207 SEFQHLSNLSEGEIAHFEASLIPVGDQTM-----TVEFLY--NGKPIE------------ASHRIRTVHAFGMVVLEILG 267 (805)
Q Consensus 207 ~~~~~~~~v~~g~~~~l~C~~~~~~~p~~-----~i~W~k--~g~~l~------------~~~~~~~~~~~~~~~L~i~~ 267 (805)
..+... .+.+|++++|.|.+ .+.|.+ .+.|+| +|..+. ...++..........|.|.+
T Consensus 126 ~~p~~~-~v~~G~~v~L~C~~--~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 202 (256)
T 1nqb_A 126 QTPLSL-PVSLGDQASISCRS--SQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISR 202 (256)
T ss_dssp EECSEE-EECTTCCEEEEEEE--SSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred ecCcEE-EEecCCcEEEEeEe--cCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECC
Confidence 333332 47899999999998 566654 999999 665431 13455554455677899999
Q ss_pred CCCcccEEEEEEEEcCCeeE-EEEEEEEEe
Q psy2166 268 TKIEDTGVYTCRATNKWGQA-EISVNLECV 296 (805)
Q Consensus 268 ~~~~d~G~Y~C~~~n~~g~~-~~~~~l~v~ 296 (805)
++.+|+|.|+|.+.+..... .....|.|.
T Consensus 203 v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~ 232 (256)
T 1nqb_A 203 VEAEDLGVYYCFQGSHVPYTFGGGTKLEIK 232 (256)
T ss_dssp CCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred CChHHCEEEEEEEccCCceEECCCEEEEEE
Confidence 99999999999999854322 223345543
|
| >1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=6.2e-18 Score=169.70 Aligned_cols=181 Identities=19% Similarity=0.189 Sum_probs=122.2
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec----------------CCCCceEEEec--CcEEEEEEcccccC
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL----------------ELGSRFKTTAD--FGFVTLDLTEVYDR 134 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i----------------~~~~~~~~~~~--~~~~~L~I~~~~~~ 134 (805)
.+.+.+|+.|+|.|.+.+...+.+.|.|+|+ +..+ ....|+.+..+ ++..+|+|.+++.+
T Consensus 9 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~ 88 (257)
T 1f3r_B 9 PGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTD 88 (257)
T ss_dssp CSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTT
T ss_pred CccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCcc
Confidence 5689999999999999842223789999995 2211 02457877664 56779999999999
Q ss_pred CCeEEEEEEEeCCe-------eE--EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCce
Q psy2166 135 DQGIYTCRAWNLAG-------ET--FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQF 205 (805)
Q Consensus 135 D~G~Y~C~a~n~~g-------~~--~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 205 (805)
|+|.|+|.|.|..| .. ...+.|.|...+.. .|.. .......++.+
T Consensus 89 DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~-----~~~~---------------------~~~~~~~~~~~ 142 (257)
T 1f3r_B 89 DTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGG-----SGGG---------------------GSGGGGSDIKL 142 (257)
T ss_dssp CCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCS-----SCCS---------------------SSCCCCCEECS
T ss_pred cCEEEEEEEcccccCccccccccccCCceEEEEEeCCcc-----cccc---------------------ccCCCccceEE
Confidence 99999999999753 11 12346666543210 0000 00000012333
Q ss_pred ecccccccccCCCceEEEEEEEeeCCCCCeEEEEEE--CCEEcc------------CCCcEEEEEEcCeEEEEEcCCCCc
Q psy2166 206 TSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY--NGKPIE------------ASHRIRTVHAFGMVVLEILGTKIE 271 (805)
Q Consensus 206 ~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k--~g~~l~------------~~~~~~~~~~~~~~~L~i~~~~~~ 271 (805)
...+... .+.+|++++|.|.+ .+.|.+.+.||| +|..+. ...++..........|.|.+++.+
T Consensus 143 ~~~p~~~-~v~~G~~v~L~C~~--~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 219 (257)
T 1f3r_B 143 TQSPSLL-SASVGDRVTLSCKG--SQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPE 219 (257)
T ss_dssp CEETSEE-CCCTTCCEEEEEEC--SSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGG
T ss_pred EccCCEE-EEcCCCCEEEEEEE--CCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChh
Confidence 3333333 47899999999998 677778999999 565431 134555544556778999999999
Q ss_pred ccEEEEEEEEcCC
Q psy2166 272 DTGVYTCRATNKW 284 (805)
Q Consensus 272 d~G~Y~C~~~n~~ 284 (805)
|+|.|+|.|.|..
T Consensus 220 D~G~Y~C~a~n~~ 232 (257)
T 1f3r_B 220 DVATYFCYQYNNG 232 (257)
T ss_dssp GCSEEEEEEESSS
T ss_pred hCEEEEEEEeCCC
Confidence 9999999999975
|
| >3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=167.07 Aligned_cols=191 Identities=17% Similarity=0.172 Sum_probs=127.2
Q ss_pred CeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec-----------------CCCCceEEEec--CcEE
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL-----------------ELGSRFKTTAD--FGFV 124 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i-----------------~~~~~~~~~~~--~~~~ 124 (805)
|.+....+..+.+.+|++|+|.|.+.+...+.+.|.|+|. +..+ ....|+.+..+ ++.+
T Consensus 6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 85 (256)
T 3juy_B 6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTA 85 (256)
T ss_dssp -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEE
T ss_pred ceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCEE
Confidence 4444455558899999999999999842236779999973 2111 11357877743 5677
Q ss_pred EEEEcccccCCCeEEEEEEEeC------------CeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCC
Q psy2166 125 TLDLTEVYDRDQGIYTCRAWNL------------AGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPA 192 (805)
Q Consensus 125 ~L~I~~~~~~D~G~Y~C~a~n~------------~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 192 (805)
+|+|.+++.+|+|.|.|.+.+. .+.......|.|...+.... +.
T Consensus 86 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~----~~-------------------- 141 (256)
T 3juy_B 86 YMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSG----GG-------------------- 141 (256)
T ss_dssp EEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC------------------------------
T ss_pred EEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCccccc----cc--------------------
Confidence 8999999999999999999986 22333345566654321100 00
Q ss_pred CCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCCC-eEEEEEEC--CEEcc------------CCCcEEEEEE
Q psy2166 193 GVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQT-MTVEFLYN--GKPIE------------ASHRIRTVHA 257 (805)
Q Consensus 193 ~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~-~~i~W~k~--g~~l~------------~~~~~~~~~~ 257 (805)
.......+|.+...+... .+.+|++++|.|.+ .+.+. +.+.|||. +..+. ...++.....
T Consensus 142 --~~~~~~~~~~~~~~~~~~-~v~~G~~v~L~C~~--~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 216 (256)
T 3juy_B 142 --GSGGGGSEIVLTQAPGTL-SLSPGERATFSCRS--SHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGS 216 (256)
T ss_dssp ------CCCCCCEEEECSEE-EECTTSCEEEEEEE--SSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE
T ss_pred --ccCCCcceeEEEecCCeE-EEeCCCCEEEEEEE--CCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEcc
Confidence 000001245555555544 48899999999998 55555 89999983 32221 2345555555
Q ss_pred cCeEEEEEcCCCCcccEEEEEEEEcCCe
Q psy2166 258 FGMVVLEILGTKIEDTGVYTCRATNKWG 285 (805)
Q Consensus 258 ~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 285 (805)
.....|.|.+++.+|+|.|.|.|.|...
T Consensus 217 ~~~~~L~I~~v~~~DsG~Y~C~~~~~~~ 244 (256)
T 3juy_B 217 GTDFTLTITRVEPEDFALYYCQVYGASS 244 (256)
T ss_dssp TTEEEEEESSCCGGGCSEEEEEECCSSC
T ss_pred CCEEEEEECCCCHhHCEEEEEEEeeCCC
Confidence 6678899999999999999999988543
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-18 Score=165.45 Aligned_cols=163 Identities=13% Similarity=0.207 Sum_probs=109.9
Q ss_pred eecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcc-cccCCCeEEEEEEEeCCeeEEEEEE
Q psy2166 77 KLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTE-VYDRDQGIYTCRAWNLAGETFTSTT 155 (805)
Q Consensus 77 ~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~-~~~~D~G~Y~C~a~n~~g~~~~~~~ 155 (805)
.+.+|+.++|.|.+. + +. .|+|+|||..+..+. ++ +|.|.+ ++.+|+|.|+|.|.|..|.......
T Consensus 10 v~~~G~~v~L~C~~~--~-~~-~i~W~k~g~~l~~~~-------~~--~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 76 (186)
T 1jbj_A 10 VSISGTSVELTCPLD--S-DE-NLKWEKNGQELPQKH-------DK--HLVLQDFSEVEDSGYYVCYTPASNKNTYLYLK 76 (186)
T ss_dssp EEEETTEEEEECSSC--C-CT-TCEEEETTEEECSCC-------CS--EEEEESCCTTTSCEEEEEECSSCCCCCCEEEC
T ss_pred EEeCCcEEEEEEeCC--C-CC-ceEEEECCEECCCCC-------CC--EEEECCCCccccCEEEEEEEEeCCCcEEEEEE
Confidence 446899999999987 4 33 499999999987641 11 799999 9999999999999999887554544
Q ss_pred EEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceec------ccccccccCCCceEEEEEEEee
Q psy2166 156 IYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTS------EFQHLSNLSEGEIAHFEASLIP 229 (805)
Q Consensus 156 l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~------~~~~~~~v~~g~~~~l~C~~~~ 229 (805)
+.|............ ........+|.+.. .+.....+.+|+.+.|.|.+
T Consensus 77 ~~v~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~-- 131 (186)
T 1jbj_A 77 ARVGSADDAKKDAAK-----------------------KDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL-- 131 (186)
T ss_dssp CCCCSCCCCCCCCCC-----------------------CCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS--
T ss_pred EEEeccccccccccc-----------------------ccccccCCccccccccccccccccceecCCCCeEEEEeeC--
Confidence 444332111000000 00000001111110 00111235699999999964
Q ss_pred CCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeE
Q psy2166 230 VGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 287 (805)
Q Consensus 230 ~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~ 287 (805)
|.|.|.|+|+|..+..... ....|.|.+++.+|+|.|+|.|.|..|..
T Consensus 132 ---p~p~i~W~k~g~~i~~~~~-------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 132 ---TDKTIKWLKDGSIISPLNA-------TKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp ---SCSCEEEEETTEECCCSSC-------CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred ---CCCeEEEEECCEECcccCC-------CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 6789999999999874432 22469999999999999999999988765
|
| >3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=9.1e-18 Score=163.36 Aligned_cols=174 Identities=15% Similarity=0.147 Sum_probs=122.4
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEECC--Ee------------cCCCCceEEEecCcEEEEEEcccccCCCeE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG--KP------------LELGSRFKTTADFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g--~~------------i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 138 (805)
+..+.+.+|+.++|.|.+. +.|.+.|.|+|.+ .. .....|+.+...++..+|.|.+++.+|+|.
T Consensus 8 p~~~~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 85 (213)
T 3r06_A 8 PSSLPASLGDRVTINCQAS--QDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGS 85 (213)
T ss_dssp CSEEEECTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred CCEEEecCCCcEEEEEEeC--CCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEE
Confidence 3467899999999999998 5688899999832 11 112458888777778899999999999999
Q ss_pred EEEEEEeCCeeE-EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCC
Q psy2166 139 YTCRAWNLAGET-FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 217 (805)
Q Consensus 139 Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~ 217 (805)
|+|.|.|..+.. .....|.|.... .+|.+...+.... +.+
T Consensus 86 Y~C~~~~~~~~~~~~~~~l~V~~~~--------------------------------------~~p~v~~~~~~~~-~~~ 126 (213)
T 3r06_A 86 YYCQQYYNYPWTFGPGTKLEIKRAD--------------------------------------AKPTVSIFPPSSE-QLG 126 (213)
T ss_dssp EEEEECSSSSCEECCCEEEEECCCC--------------------------------------BCCEEEEECCCHH-HHT
T ss_pred EEEecccCCceEEcCCceEEEeccC--------------------------------------CCceeeeeCCCce-ecC
Confidence 999998875432 233456663211 4466655444432 456
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCC-cEEEEE--EcC----eEEEEEcCCCCcccEEEEEEEEcCCeeE
Q psy2166 218 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH-RIRTVH--AFG----MVVLEILGTKIEDTGVYTCRATNKWGQA 287 (805)
Q Consensus 218 g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~-~~~~~~--~~~----~~~L~i~~~~~~d~G~Y~C~~~n~~g~~ 287 (805)
|+.++|.|.+.....+.+.+.|+|+|..+.... ...... .++ .+.|.|.....+|+|.|+|.|.|.....
T Consensus 127 ~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~ 203 (213)
T 3r06_A 127 TGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTA 203 (213)
T ss_dssp TTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred CCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCc
Confidence 888999999853323357999999999887532 111011 111 2468888888899999999999976443
|
| >3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-18 Score=165.30 Aligned_cols=174 Identities=17% Similarity=0.252 Sum_probs=119.7
Q ss_pred cccCCCeEEEEEEEeecCC-CCcEEEEEECC--EE-------------cc---CCCceEEEEeCcEEEEEEcccCcCCce
Q psy2166 315 GLKDGDSAHFECTLTPVND-PELKVEWFHNG--KP-------------IF---HKNRVKMVSDFGFVVMDIAYVQSHDSG 375 (805)
Q Consensus 315 ~~~~g~~~~l~C~~~~~~~-p~~~v~W~~~g--~~-------------l~---~~~~~~~~~~~~~~~l~i~~v~~~d~G 375 (805)
.+.+|+.++|.|.+. +. |.+.+.|+|.. .. .. ...++.+........|.|.+++.+|+|
T Consensus 11 ~v~~G~~v~L~C~~~--~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 88 (218)
T 3s96_B 11 SFSLGASAKLTCTLN--SQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEA 88 (218)
T ss_dssp EEETTSCEEEEEEEC--GGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred EECCCCcEEEEEECC--CCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccCE
Confidence 388999999999998 66 88899999821 10 00 123666666667788999999999999
Q ss_pred EEEEEEEeCce-----eeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeec
Q psy2166 376 EYVCRAWNKYG-----EDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLK 450 (805)
Q Consensus 376 ~Y~C~a~n~~g-----~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (805)
.|.|.+.|..| .....+.|.|...+
T Consensus 89 ~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~-------------------------------------------------- 118 (218)
T 3s96_B 89 IYICGVGDTIKEQFVYVFGGGTKVTVLGQP-------------------------------------------------- 118 (218)
T ss_dssp EEEEEEEEEETTEEEEEECCCEEEEEESCC--------------------------------------------------
T ss_pred EEEEEEecCCCCceeEEEcCcEEEEEecCC--------------------------------------------------
Confidence 99999998775 22233566654211
Q ss_pred CCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCc-E
Q psy2166 451 EGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDL-V 529 (805)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~-~ 529 (805)
..+|.+....+... +..|+.++|.|.+.+ ..|.+ .
T Consensus 119 ------------------------------------------~~~P~~~~~~~~~~-~~~~~~v~L~C~~~g-~~p~~~~ 154 (218)
T 3s96_B 119 ------------------------------------------KSTPTLTVFPPSSE-ELKENKATLVCLISN-FSPSGVT 154 (218)
T ss_dssp ------------------------------------------CBCCEEEEECCCHH-HHHTTEEEEEEEEEE-EBSSCCE
T ss_pred ------------------------------------------CCCceEEeeCCCcc-cccCCcEEEEEEECc-ccCCCeE
Confidence 25566666554443 556799999999995 25655 9
Q ss_pred EEEEECCEEccCCCceE--EEeeCCE---EEEEEccCCCCCCEEEEEEEEcCCcceEEEE
Q psy2166 530 VEWFYNGKKLPHGHRYR--TFHDFGI---VILDILYCYEENSGVYECRATNKYGSDVTKA 584 (805)
Q Consensus 530 v~W~~~g~~l~~~~~~~--~~~~~~~---~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 584 (805)
|+|+|||.++..+.... ...++.. +.|.|.....+|+|.|+|.|.|..|.....+
T Consensus 155 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~ 214 (218)
T 3s96_B 155 VAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL 214 (218)
T ss_dssp EEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred EEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence 99999999996532111 1112222 3488888888899999999999987665443
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=158.71 Aligned_cols=161 Identities=19% Similarity=0.182 Sum_probs=112.7
Q ss_pred CCceecCCCcEEEEEEEecCCCCCceEEEEECCEecC---CC---------------CceEEEecCcEEEEEEcccccCC
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLE---LG---------------SRFKTTADFGFVTLDLTEVYDRD 135 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~---~~---------------~~~~~~~~~~~~~L~I~~~~~~D 135 (805)
..+.+.+|++|+|.|.+.+ +.+.+.|.|+|+|..+. .+ +|+.+.. ..+|+|.+++.+|
T Consensus 6 ~~v~~~~G~~v~L~C~~~~-~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~---~~sL~I~~v~~~D 81 (193)
T 2if7_A 6 LMVNGILGESVTLPLEFPA-GEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQ---SYSLQLSNLKMED 81 (193)
T ss_dssp EEEEEETTSCEEECCCCCC-CSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECT---TCCEEECSCCGGG
T ss_pred eEEEEEecCeEEEeccCCC-cccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECC---CeEEEECCCCccc
Confidence 3568899999999999873 24557999999986542 11 2444442 2379999999999
Q ss_pred CeEEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccccccccc
Q psy2166 136 QGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNL 215 (805)
Q Consensus 136 ~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v 215 (805)
+|.|.|.+.+..+.......|.|..++. .|.+..... ..
T Consensus 82 ~G~Y~C~~~~~~~~~~~~~~L~V~~~~~--------------------------------------~p~i~~~~~---~~ 120 (193)
T 2if7_A 82 TGSYRAQISTKTSAKLSSYTLRILRQLR--------------------------------------NIQVTNHSQ---LF 120 (193)
T ss_dssp CEEEEEEEECSSCEEEEEEEEEEECCCE--------------------------------------EEEEEECCC-----
T ss_pred CceEEEEEEecCCCeEEEEEEEEEccCC--------------------------------------CCeEecCce---ee
Confidence 9999999999887766677787764321 133333221 13
Q ss_pred CCCc-eEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCc-ccEEEEEEEEcCCeeEEEEE
Q psy2166 216 SEGE-IAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIE-DTGVYTCRATNKWGQAEISV 291 (805)
Q Consensus 216 ~~g~-~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~-d~G~Y~C~~~n~~g~~~~~~ 291 (805)
..|. .++|.|.+. .+.|.+.|.|+++|..+.... .|.|.....+ |+|.|+|.|.|..|..+..+
T Consensus 121 ~~g~~~v~L~C~~~-g~~p~p~i~W~~~g~~l~~~~-----------~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~ 186 (193)
T 2if7_A 121 QNMTCELHLTCSVE-DADDNVSFRWEALGNTLSSQP-----------NLTVSWDPRISSEQDYTCIAENAVSNLSFSV 186 (193)
T ss_dssp -CSSEEEEEEEEEE-SCCTTCEEEEEETTEEEESSS-----------EEEEEECTTTCSCCEEEEEEEETTEEEEEEE
T ss_pred cCCCceEEEEEEEe-cCCCceEEEEEeCCEEcCCCC-----------eEEEEeccCcCCCCcEEEEEECCCCcccccc
Confidence 3465 899999984 235689999999998764322 3555433444 89999999999998875543
|
| >1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ... | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-17 Score=161.44 Aligned_cols=172 Identities=15% Similarity=0.201 Sum_probs=121.3
Q ss_pred ccCCCeEEEEEEEeecCCC---CcEEEEEECC--EEc------------cCCCceEEEEeCcEEEEEEcccCcCCceEEE
Q psy2166 316 LKDGDSAHFECTLTPVNDP---ELKVEWFHNG--KPI------------FHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p---~~~v~W~~~g--~~l------------~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~ 378 (805)
+.+|+.++|.|.+. +.| .+.|.|+|++ ..+ ....++.+...++...|.|.+++.+|+|.|.
T Consensus 12 v~~G~~v~L~C~~~--~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 89 (212)
T 1q0x_L 12 TSPGETVTLTCRSS--TGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIYF 89 (212)
T ss_dssp ECTTCCEEEEEEES--SSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred ecCCCCEEEEEEec--ccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCEEEE
Confidence 88999999999997 555 4789999852 222 1235666666667778999999999999999
Q ss_pred EEEEeCceeeE-EEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEE
Q psy2166 379 CRAWNKYGEDF-TRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHF 457 (805)
Q Consensus 379 C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (805)
|.+.|..+... ....|.|...
T Consensus 90 C~~~~~~~~~~~~~~~l~V~~~---------------------------------------------------------- 111 (212)
T 1q0x_L 90 CALWSNNKLVFGGGTKLTVLGQ---------------------------------------------------------- 111 (212)
T ss_dssp EEEECSSCEEECCCEEEEECCS----------------------------------------------------------
T ss_pred EEEecCchhhcCCCeEEEEecC----------------------------------------------------------
Confidence 99999876432 2234544211
Q ss_pred EEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCE
Q psy2166 458 EARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGK 537 (805)
Q Consensus 458 ~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~ 537 (805)
...+|.+....+... +.+|+.++|.|.+.+...+++.|+|+|||+
T Consensus 112 ----------------------------------~~~~P~v~~~~~~~~-~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~ 156 (212)
T 1q0x_L 112 ----------------------------------PKSSPTVTLFPPSSE-ELSTAKATLVCTITDFYPGVVTVDWKVDGT 156 (212)
T ss_dssp ----------------------------------CCBCCEEEEECCCHH-HHTTTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred ----------------------------------CCCCCeeEEeCCCHH-HccCCcEEEEEEEEEEeCCCeEEEEEECCE
Confidence 124677766555443 557999999999996322234999999999
Q ss_pred EccCCCceE--EEeeCC----EEEEEEccCCCCCCEEEEEEEEcCCcceEE
Q psy2166 538 KLPHGHRYR--TFHDFG----IVILDILYCYEENSGVYECRATNKYGSDVT 582 (805)
Q Consensus 538 ~l~~~~~~~--~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 582 (805)
.+..+.+.. ....++ .+.|.|..+..+|+|.|+|.|.|.......
T Consensus 157 ~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~ 207 (212)
T 1q0x_L 157 PVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNK 207 (212)
T ss_dssp EECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEE
T ss_pred eCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceee
Confidence 987652211 111121 346999999999999999999998765443
|
| >3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ... | Back alignment and structure |
|---|
Probab=99.76 E-value=5.5e-18 Score=164.63 Aligned_cols=172 Identities=14% Similarity=0.152 Sum_probs=125.5
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEEC--CEEcc------------CCCceEEEEeCcEEEEEEcccCcCCceEEEEEE
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFHN--GKPIF------------HKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRA 381 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~--g~~l~------------~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a 381 (805)
+.+|+.++|.|.+ . +.+.+.|+|+ +..+. ...++.+........|.|.+++.+|+|.|+|.+
T Consensus 12 v~~G~~v~L~C~~---~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 87 (211)
T 3tv3_L 12 GSPGQSITISCTG---T-SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCGS 87 (211)
T ss_dssp ECTTCEEEEEEEC---C-CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEEE
T ss_pred EcCCCCEEEEEEE---C-CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEEE
Confidence 8899999999998 4 7889999994 32221 235666666677788999999999999999999
Q ss_pred EeCce--eeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEE
Q psy2166 382 WNKYG--EDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEA 459 (805)
Q Consensus 382 ~n~~g--~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (805)
.|..+ .....+.|.|...
T Consensus 88 ~~~~~~~~~~~~~~l~V~~~------------------------------------------------------------ 107 (211)
T 3tv3_L 88 LVGNWDVIFGGGTKLTVLGQ------------------------------------------------------------ 107 (211)
T ss_dssp EETTTEEEECCCEEEEECCS------------------------------------------------------------
T ss_pred ecCCCceeECCCceEEEeCC------------------------------------------------------------
Confidence 99887 2334456665321
Q ss_pred EEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEc
Q psy2166 460 RLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL 539 (805)
Q Consensus 460 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l 539 (805)
...+|.+...+.... +.+|+.++|.|.+.+...|.+.++|+|||..+
T Consensus 108 --------------------------------~~~~P~v~~~~~~~~-~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l 154 (211)
T 3tv3_L 108 --------------------------------PKAAPSVTLFPPSSE-ELQANKATLVCLISDFYPGAVTVAWKADSSPV 154 (211)
T ss_dssp --------------------------------CCBCCEEEEECCCHH-HHHTTCEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred --------------------------------CCcCCeeEecCCchh-hhcCCCeEEEEEeeeecCCCeEEEEEECCeec
Confidence 135677776665544 45899999999999643457899999999998
Q ss_pred cCCCceE--EEeeCC----EEEEEEccCCCCCCEEEEEEEEcCCcceEEEE
Q psy2166 540 PHGHRYR--TFHDFG----IVILDILYCYEENSGVYECRATNKYGSDVTKA 584 (805)
Q Consensus 540 ~~~~~~~--~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 584 (805)
..+.... ....++ .+.|.|..+..+|+|.|+|.|.|..+....++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~ 205 (211)
T 3tv3_L 155 KAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV 205 (211)
T ss_dssp CTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEE
T ss_pred CCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeec
Confidence 6531110 111111 24699999888999999999999987766554
|
| >3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-17 Score=166.39 Aligned_cols=146 Identities=17% Similarity=0.126 Sum_probs=101.7
Q ss_pred CCEEEEEeccCCCCCcEEEEEEEEeC------------CcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCC
Q psy2166 624 FGIVILDILYCYEENSGVYECRATNK------------YGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRP 691 (805)
Q Consensus 624 ~~~~~L~i~~~~~~d~G~Y~C~a~n~------------~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~ 691 (805)
++...|.|.+++.+|+|.|.|.|.|. .+.......|.|...+.... |. .......+
T Consensus 82 ~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~----~~--------~~~~~~~~ 149 (256)
T 3juy_B 82 ANTAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSG----GG--------GSGGGGSE 149 (256)
T ss_dssp TTEEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------------------CCCC
T ss_pred CCEEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCccccc----cc--------ccCCCcce
Confidence 34567999999999999999999997 33333456677765321000 00 00000125
Q ss_pred CeeeecCCcccccCCCCeEEEEEEEeecCCCC-eEEEEEEC--CEEcc------------CCCCeEEEeeCcEEEEEEcC
Q psy2166 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQT-MTVEFLYN--GKPIE------------ASHRIRTVHAFGMVVLEILG 756 (805)
Q Consensus 692 P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~-~~v~W~~~--g~~l~------------~~~~~~~~~~~~~~~L~i~~ 756 (805)
|.+...+.+. .+.+|++++|.|.+. +.|. +.|.|+|. +..+. ...++.+..++....|+|.+
T Consensus 150 ~~~~~~~~~~-~v~~G~~v~L~C~~~--~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 226 (256)
T 3juy_B 150 IVLTQAPGTL-SLSPGERATFSCRSS--HSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITR 226 (256)
T ss_dssp CCEEEECSEE-EECTTSCEEEEEEES--SCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred eEEEecCCeE-EEeCCCCEEEEEEEC--CCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECC
Confidence 6777778888 999999999999998 7776 89999982 32221 24577776777788999999
Q ss_pred CCCCCCEEEEEEEEcCCccEE-EEEEEEE
Q psy2166 757 TKIEDTGVYTCRATNKWGQAE-ISVNLEC 784 (805)
Q Consensus 757 v~~~d~G~Y~C~a~N~~G~~~-~~~~l~V 784 (805)
++.+|+|.|.|.|.|..+... ..+.|.|
T Consensus 227 v~~~DsG~Y~C~~~~~~~~~~g~gt~l~V 255 (256)
T 3juy_B 227 VEPEDFALYYCQVYGASSYTFGQGTKLER 255 (256)
T ss_dssp CCGGGCSEEEEEECCSSCCEECCCEEEEE
T ss_pred CCHhHCEEEEEEEeeCCCceEcCCEEEEE
Confidence 999999999999999655322 2334444
|
| >2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-18 Score=162.31 Aligned_cols=160 Identities=14% Similarity=0.182 Sum_probs=120.2
Q ss_pred ccCCCceEEEEEEEeeCCCCCeEEEEEECCEE--ccC------------CCcEEEEE---EcCeEEEEEcCCCCcccEEE
Q psy2166 214 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKP--IEA------------SHRIRTVH---AFGMVVLEILGTKIEDTGVY 276 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~--l~~------------~~~~~~~~---~~~~~~L~i~~~~~~d~G~Y 276 (805)
.+.+|+.++|.|.+ .+.|.+.+.|+|++.. +.. ..++.... .++...|.|.+++.+|+|.|
T Consensus 6 ~~~~G~~v~L~C~~--~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 83 (184)
T 2ny1_B 6 LGKKGDTVELTCTA--SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 83 (184)
T ss_dssp EEETTSCEEECCBC--SSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred EEeCCCCEEEEEEE--cCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence 47899999999987 5788899999999863 211 11222211 23356799999999999999
Q ss_pred EEEEEcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEE
Q psy2166 277 TCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMV 356 (805)
Q Consensus 277 ~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~ 356 (805)
+|.+.|..+ .+.+.|.. +.. +... .+.+|+.++|.|.+. +.|.+.+.|++++..+.
T Consensus 84 ~C~~~~~~~----~~~l~V~~--------~~~-~~~~-~v~~g~~~~l~C~~~--~~p~~~v~W~~~~~~~~-------- 139 (184)
T 2ny1_B 84 ICEVEDQKE----EVQLLVFG--------LTA-NSDT-HLLQGQSLTLTLESP--PGSSPSVQCRSPRGKNI-------- 139 (184)
T ss_dssp EEEETTEEE----EEEEEEEE--------EEE-SSCS-EEETTCCEEEEEECC--TTCCCEEEEECTTSCEE--------
T ss_pred EEEEEcCCC----cEEEEEEE--------ecC-CCCc-eeecCCCEEEEEEcC--CCCCCEEEEEeCCCccc--------
Confidence 999988754 33444431 111 2222 378999999999997 77999999999876541
Q ss_pred EeCcEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEeccc
Q psy2166 357 SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGG 401 (805)
Q Consensus 357 ~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~ 401 (805)
.... .|.|.++..+|+|.|+|.|.|..+.....+.|.|.+.|.
T Consensus 140 ~~~~--~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~ 182 (184)
T 2ny1_B 140 QGGK--TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK 182 (184)
T ss_dssp EESS--EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC
T ss_pred cCce--EEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCC
Confidence 1222 699999999999999999999999999999999986553
|
| >3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-17 Score=166.34 Aligned_cols=152 Identities=16% Similarity=0.091 Sum_probs=104.4
Q ss_pred CEEEEEeccCCCCCcEEEEEEEEeC----CcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCc
Q psy2166 625 GIVILDILYCYEENSGVYECRATNK----YGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQH 700 (805)
Q Consensus 625 ~~~~L~i~~~~~~d~G~Y~C~a~n~----~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~ 700 (805)
+...|.|.+++.+|+|.|.|.|.|. .+.....+.|.|...+...... ........+|.+...+..
T Consensus 79 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~-----------~~~~~~~~~~~~~~~p~~ 147 (256)
T 3umt_A 79 STAYLELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGG-----------GSGGGGSTDIQLTQSPSS 147 (256)
T ss_dssp TEEEEEECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC--------------------------CCCCEEEECSE
T ss_pred CEEEEEECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCc-----------ccCCCCccccEEEcCCCe
Confidence 4567999999999999999999998 3333445677776421000000 000000026777777877
Q ss_pred ccccCCCCeEEEEEEEeecCCCCeEEEEEEC--CEEcc------------CCCCeEEEeeCcEEEEEEcCCCCCCCEEEE
Q psy2166 701 LSNLSEGEIAHFEASLIPVGDQTMTVEFLYN--GKPIE------------ASHRIRTVHAFGMVVLEILGTKIEDTGVYT 766 (805)
Q Consensus 701 ~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g~~l~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 766 (805)
. .+.+|++++|.|.+. +.|.+.|.|+|+ |..+. ...++.....+...+|+|.+++.+|+|.|.
T Consensus 148 ~-~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 224 (256)
T 3umt_A 148 L-SASLGERVSITCRAS--QDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYY 224 (256)
T ss_dssp E-EECTTCCEEEEEEES--SCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEE
T ss_pred E-EEECCCCEEEEEEEe--cCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEE
Confidence 7 899999999999998 888889999994 22211 235677666777889999999999999999
Q ss_pred EEEEcCCccEE-EEEEEEEEEeCCC
Q psy2166 767 CRATNKWGQAE-ISVNLECVVWSPS 790 (805)
Q Consensus 767 C~a~N~~G~~~-~~~~l~V~~~~~~ 790 (805)
|.|.|..+... ..++|+|...++.
T Consensus 225 C~~~~~~~~~fg~gt~L~V~~~~~~ 249 (256)
T 3umt_A 225 CLQYASSPPTFGGGTKLEIKRAAAL 249 (256)
T ss_dssp EEECSSSSCEECCCEEEEEC-----
T ss_pred EEEeeCCCcEECCCEEEEEECCCcc
Confidence 99999765433 3567888765544
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=7.1e-18 Score=170.71 Aligned_cols=205 Identities=16% Similarity=0.240 Sum_probs=123.7
Q ss_pred CeEEecCCCCceecCCCcEEEEEEEecC-CCCCceEEEEECCEecCCC------------------CceEEEec--CcEE
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPK-NDPNLKIEWIFNGKPLELG------------------SRFKTTAD--FGFV 124 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~~~~~-~~p~~~v~W~k~g~~i~~~------------------~~~~~~~~--~~~~ 124 (805)
+.+...++ .+.+.+|+.++|.|.+... +.+.+.|.|+|++...... .|+.+..+ .+..
T Consensus 6 ~~v~~~~~-~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 84 (268)
T 3mj6_A 6 PGLTVSSP-QLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDG 84 (268)
T ss_dssp ------CC-EEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBC
T ss_pred cccccCCC-ceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEE
Confidence 33444444 6789999999999998732 4677889999966433221 34444221 2235
Q ss_pred EEEEcccccCCCeEEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCc
Q psy2166 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQ 204 (805)
Q Consensus 125 ~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 204 (805)
+|.|.+++.+|+|.|+|.+.+..+.......+.+.+.+ .+|.
T Consensus 85 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~--------------------------------------~~p~ 126 (268)
T 3mj6_A 85 SLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP--------------------------------------EEPR 126 (268)
T ss_dssp CEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC--------------------------------------CCCS
T ss_pred EEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEec--------------------------------------cCCC
Confidence 79999999999999999999876554333333333221 1111
Q ss_pred eecccccccccCCCceEEEEEEEee-CCCCCeEEEEEEC-CEEccCC---------------------CcEEEEE--EcC
Q psy2166 205 FTSEFQHLSNLSEGEIAHFEASLIP-VGDQTMTVEFLYN-GKPIEAS---------------------HRIRTVH--AFG 259 (805)
Q Consensus 205 ~~~~~~~~~~v~~g~~~~l~C~~~~-~~~p~~~i~W~k~-g~~l~~~---------------------~~~~~~~--~~~ 259 (805)
...+.+|+.++|.|.+.. .+.|.+.+.|+++ +..+... .+..... ...
T Consensus 127 -------~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 199 (268)
T 3mj6_A 127 -------DLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRN 199 (268)
T ss_dssp -------EEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGT
T ss_pred -------ccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCC
Confidence 124779999999998742 3668899999994 3221110 0111100 123
Q ss_pred eEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCe
Q psy2166 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDS 321 (805)
Q Consensus 260 ~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~ 321 (805)
...|.|.+++.+|+|.|+|.|.|..+.....+.|.|.. .+|.+...+.... +.+|+.
T Consensus 200 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~----~~p~~~~~p~~~~-~~~~q~ 256 (268)
T 3mj6_A 200 DGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQ----DEFQRTISPTPPT-DKGQQG 256 (268)
T ss_dssp BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC----C-------------------
T ss_pred eEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEEEc----CCCeeeeCCCCCC-CCccee
Confidence 46899999999999999999999999999999998865 4455554444333 444444
|
| >1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-18 Score=172.28 Aligned_cols=257 Identities=13% Similarity=0.098 Sum_probs=102.9
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec-CCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL-ELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETF 151 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i-~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~ 151 (805)
.+.|.+|+.++|+|.+... .| ..+.|.-. +..+ ..+. ....|.|.+++.+ |.|.|.+.......+
T Consensus 8 ~~~V~~G~sv~l~Cs~~c~-~p-~~~~~~t~l~~~~~~~~g~--------~~~~~~l~~v~~~--~~y~C~~~~~~~~~~ 75 (291)
T 1mq8_A 8 KVILPRGGSVLVTCSTSCD-QP-KLLGIETPLPKKELLLPGN--------NRKVYELSNVQED--SQPMCYSNCPDGQST 75 (291)
T ss_dssp EEEECTTCEEEEEEEECCS-SC-SEEEEECSSCCCCCCCSCS--------SEEEEEEESCCSC--CCCEEEEECSSCEEE
T ss_pred ccEEcCCCeEEEEEeCCCC-CC-ccceEEecCCCcccccCCC--------ceEEEEEEecccC--CeEEEEEEcCCccEE
Confidence 6789999999999999732 32 24888631 1111 1111 2225778888753 469999976544455
Q ss_pred EEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCC
Q psy2166 152 TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG 231 (805)
Q Consensus 152 ~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~ 231 (805)
....|.|..+|.. |.+...+ ..+.+|+.++|.|.+. .+
T Consensus 76 ~~v~l~V~~~P~~--------------------------------------v~I~~~~---~~~~~G~~~~LtC~v~-g~ 113 (291)
T 1mq8_A 76 AKTFLTVYWTPER--------------------------------------VELAPLP---SWQPVGKNLTLRCQVE-GG 113 (291)
T ss_dssp EECEEEECBCCSC--------------------------------------CCBCCCC---SBCCSSCCCEEEEEEC-CC
T ss_pred EEEEEEEecCCCC--------------------------------------CEEecCC---ccccCCCCEEEEEEec-Cc
Confidence 5667777655422 2222221 1277999999999985 34
Q ss_pred CCC--eEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCee--------EEEEEEEEEeccCCC
Q psy2166 232 DQT--MTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ--------AEISVNLECVDKSKG 301 (805)
Q Consensus 232 ~p~--~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~--------~~~~~~l~v~~~~~~ 301 (805)
.|. +.|+|||+++.+..... .......+|.+.....+|.+.|+|+|.|..+. .+....+.|+..+..
T Consensus 114 ~P~~~l~itW~kg~~~l~~~~~---~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~ 190 (291)
T 1mq8_A 114 APRANLTVVLLRGEKELKREPA---VGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPAT 190 (291)
T ss_dssp BSTTTEEEEEESSSSEEEEEEC---CBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC------
T ss_pred cCCCCcEEEEEECCEEeecccC---CCCCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCC
Confidence 454 47999999988754321 11112356777777777777999999986442 234455666542110
Q ss_pred CCCeEEecCCCcccccCCCeEEEEEEEeecCCCC---cEEEEEECCEEccCCCceEEEEeCcEEEEEEc-ccCc--CCce
Q psy2166 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE---LKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIA-YVQS--HDSG 375 (805)
Q Consensus 302 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~---~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~-~v~~--~d~G 375 (805)
.+.+.. +. .+.+|+.++|.|.+. +.++ ..+.|+++|+.+.... ..++...++... .+.. ++.+
T Consensus 191 -~~~~~~---p~-~l~eG~~v~l~C~~~--g~~P~~~~~v~w~~~g~~l~~~~----~~~g~~~~~~~~~~~~~~~~~~~ 259 (291)
T 1mq8_A 191 -PPQLVS---PR-VLEVDTQGTVVCSLD--GLFPVSEAQVHLALGDQRLNPTV----TYGNDSFSAKASVSVTAEDEGTQ 259 (291)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -CceecC---Cc-CccCCCeEEEEEEcC--CCCCCcccEEEEEECCEecCcee----eecCCeEEEEEecceeEcCCCCE
Confidence 112211 12 378999999999998 5433 3699999999986421 112222121111 1134 3466
Q ss_pred EEEEEEEeCceeeEEEEEEEEEec
Q psy2166 376 EYVCRAWNKYGEDFTRATIKCFGK 399 (805)
Q Consensus 376 ~Y~C~a~n~~g~~~~~~~l~V~~~ 399 (805)
.|+|.|.+..........|.|+..
T Consensus 260 ~~~C~~~~~~~~~~~~~~l~v~~~ 283 (291)
T 1mq8_A 260 RLTCAVILGNQSQETLQTVTIYSF 283 (291)
T ss_dssp ------------------------
T ss_pred EEEEEEEeCCcceEEEEEEEEEcC
Confidence 788998875555556677777753
|
| >1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H | Back alignment and structure |
|---|
Probab=99.75 E-value=6.6e-18 Score=165.12 Aligned_cols=181 Identities=13% Similarity=0.140 Sum_probs=114.7
Q ss_pred cccCCCeEEEEEEEeeCCCCCcEEEEEEC--CEEcc-----------------CCCceEEEee--CCEEEEEEccCCCCC
Q psy2166 507 QLKEGQSAHFEARLTPVTDPDLVVEWFYN--GKKLP-----------------HGHRYRTFHD--FGIVILDILYCYEEN 565 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~p~~~v~W~~~--g~~l~-----------------~~~~~~~~~~--~~~~~L~i~~v~~~d 565 (805)
.+.+|++++|.|.+.+.+.+.+.+.|+|+ |..+. ...|+.+..+ .+...|.|.+++.+|
T Consensus 11 ~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D 90 (219)
T 1c1e_H 11 LKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLKNED 90 (219)
T ss_dssp EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCCGGG
T ss_pred EecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCCccc
Confidence 48899999999999942223789999986 43221 1245655443 345679999999999
Q ss_pred CEEEEEEEEcCCcceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEE
Q psy2166 566 SGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECR 645 (805)
Q Consensus 566 ~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 645 (805)
+|.|.|.|.|..+.....+ +
T Consensus 91 ~G~Y~C~~~~~~~~~~~~~------------------------------~------------------------------ 110 (219)
T 1c1e_H 91 MATYFCARGTTIVRAMDYW------------------------------G------------------------------ 110 (219)
T ss_dssp CEEEEEEEEETTTTEEEEE------------------------------C------------------------------
T ss_pred CEEEEEEEeccCcccceee------------------------------c------------------------------
Confidence 9999999987653211000 0
Q ss_pred EEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecC-CCCe
Q psy2166 646 ATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG-DQTM 724 (805)
Q Consensus 646 a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g-~p~~ 724 (805)
..+.|.|...+ ..+|.+...+... .+.+|+.++|.|.+. | .|.|
T Consensus 111 ---------~~~~l~V~~~~-----------------------~~~P~i~~~~~~~-~~~~g~~v~L~C~~~--g~~P~p 155 (219)
T 1c1e_H 111 ---------QGTSLTVSSAK-----------------------TTPPSVYPLAPGS-AAQTNSMVTLGCLVK--GYFPEP 155 (219)
T ss_dssp ---------CCEEEEECCCC-----------------------CBCCEEEEECCCS-SSCCSSEEEEEEEEE--EEBSSC
T ss_pred ---------CceEEEEecCC-----------------------CCCCeEEEecCcc-ccccCCeEEEEEEcc--cccCCC
Confidence 00112221100 0245554444344 578899999999999 7 8988
Q ss_pred -EEEEEECCEEccCCCCeEEEeeCc---EEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEE
Q psy2166 725 -TVEFLYNGKPIEASHRIRTVHAFG---MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783 (805)
Q Consensus 725 -~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 783 (805)
.|+|+|+|..+...........+. ...|.|..... |.|.|+|.|.|..|......+|.
T Consensus 156 ~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~~~i~ 217 (219)
T 1c1e_H 156 VTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVDKKIV 217 (219)
T ss_dssp CEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEEEECC
T ss_pred eEEEEEeCCcccceEecCCcccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEEEecC
Confidence 999999998653211101111111 23688954444 55999999999999877666554
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=162.34 Aligned_cols=172 Identities=15% Similarity=0.170 Sum_probs=117.7
Q ss_pred EEecCCCCceecCCCcEEEEEEEecC-----CCCCceEEEEECCEec-----------------CCCCceEEEec--CcE
Q psy2166 68 FIVPLKPEFKLGEAQPLHLEAQVEPK-----NDPNLKIEWIFNGKPL-----------------ELGSRFKTTAD--FGF 123 (805)
Q Consensus 68 ~~~~~~~~~~v~~G~~v~L~C~~~~~-----~~p~~~v~W~k~g~~i-----------------~~~~~~~~~~~--~~~ 123 (805)
|.+..+..+.+.+|+.++|.|.+... +.+.+.|.|+|++... ....|+.+..+ .+.
T Consensus 2 ~~~~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 81 (214)
T 2zg1_A 2 YELQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKN 81 (214)
T ss_dssp CEEECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTB
T ss_pred ceeeCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCe
Confidence 34555667899999999999999832 1257899999986521 12346666543 245
Q ss_pred EEEEEcccccCCCeEEEEEEEeCCeeEE----EEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCC
Q psy2166 124 VTLDLTEVYDRDQGIYTCRAWNLAGETF----TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSED 199 (805)
Q Consensus 124 ~~L~I~~~~~~D~G~Y~C~a~n~~g~~~----~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (805)
.+|.|.+++.+|+|.|.|.+.+..+... ....|.|...+
T Consensus 82 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~------------------------------------- 124 (214)
T 2zg1_A 82 CSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALI------------------------------------- 124 (214)
T ss_dssp CCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCC-------------------------------------
T ss_pred EEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCC-------------------------------------
Confidence 5799999999999999999998763322 35666665432
Q ss_pred CCCCceecccccccccCCCceEEEEEEEeeC--CCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEE
Q psy2166 200 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPV--GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYT 277 (805)
Q Consensus 200 ~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~--~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 277 (805)
.+|.+... . .+.+|+.++|.|.+... +.|.|.+.|++++..+.... . .....|.|..+..+|+|.|+
T Consensus 125 -~~p~i~~~--~--~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~~~-~-----~~~~~L~i~~~~~~~~g~Y~ 193 (214)
T 2zg1_A 125 -EKPDIHFL--E--PLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPE-T-----TRSSELTLTPRPEDHGTNLT 193 (214)
T ss_dssp -CCCEEC----C--CCCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSCSS-C-----CCSSEEEECCCTTCCSCEEE
T ss_pred -CCCceecC--c--cccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccCCCC-c-----eeEEEEEEecccHHcCcEEE
Confidence 23444331 1 26789999999987311 24789999999986543221 1 22347999999999999999
Q ss_pred EEEEcCCeeE
Q psy2166 278 CRATNKWGQA 287 (805)
Q Consensus 278 C~~~n~~g~~ 287 (805)
|.|.|..+..
T Consensus 194 C~a~n~~~~~ 203 (214)
T 2zg1_A 194 CQMKRQGAQV 203 (214)
T ss_dssp EEEECC----
T ss_pred EEEEeCCCCc
Confidence 9999976443
|
| >1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-18 Score=169.12 Aligned_cols=171 Identities=11% Similarity=0.088 Sum_probs=115.1
Q ss_pred CCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEE-EEEcCeEEEEEcCCCCcccEEEEEE
Q psy2166 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT-VHAFGMVVLEILGTKIEDTGVYTCR 279 (805)
Q Consensus 201 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~ 279 (805)
.+|.|...+. ..+.+|++++|.|.+ . .+.+.+.|||+|..+........ ........|.|.+++.+|+|.|+|.
T Consensus 6 ~kP~i~~~P~--~~V~~G~~VtL~C~~--~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 80 (257)
T 1b6u_A 6 RKPSLLAHPG--PLVKSEETVILQCWS--D-VRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCY 80 (257)
T ss_dssp CCCEECCBSC--SEEESSCCEEEEEEE--S-SCCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEE
T ss_pred CCCEEEEcCC--CEecCCCCEEEEEec--C-CCCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEe
Confidence 4577776665 247899999999998 3 34578999999875432110000 0012346899999999999999999
Q ss_pred EEcCCe-----eEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceE
Q psy2166 280 ATNKWG-----QAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVK 354 (805)
Q Consensus 280 ~~n~~g-----~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~ 354 (805)
+.+... ..+..+.|.|.... .+|.+...+.. .+.+|+.++|.|.+. +. .+.|.|+|+|..+.......
T Consensus 81 a~~~~~~~~~s~~S~~~~L~V~~~~--~~P~l~~~p~~--~V~~G~~vtL~C~~~--~~-~~~~~w~k~g~~~~~~~~~~ 153 (257)
T 1b6u_A 81 GSVTHSPYQLSAPSDPLDIVITGLY--EKPSLSAQPGP--TVLAGESVTLSCSSR--SS-YDMYHLSREGEAHERRFSAG 153 (257)
T ss_dssp EECSSCTTSCCCCCCCEEEEEECSS--CCCEEECSSCT--TCBTTCEEEEEEECS--SC-CSEEEEEETTSSCEECCBCB
T ss_pred EeccCCCccccccCCCEEEecccCC--CCcceEccCCC--ccCCCCEEEEEEeCC--CC-CcEEEEEECCcccCcccccc
Confidence 986421 22445566665432 45666655543 388999999999986 44 46899999998765322111
Q ss_pred EEE-eCcEEEEEEcccCcCCceEEEEEEEeCc
Q psy2166 355 MVS-DFGFVVMDIAYVQSHDSGEYVCRAWNKY 385 (805)
Q Consensus 355 ~~~-~~~~~~l~i~~v~~~d~G~Y~C~a~n~~ 385 (805)
... ......|.|.+++ |+|.|+|.|.+..
T Consensus 154 ~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~ 183 (257)
T 1b6u_A 154 PKVNGTFQADFPLGPAT--HGGTYRCFGSFRD 183 (257)
T ss_dssp CCSSSCCBEEEEEEECC--SCEEEEEEEECSS
T ss_pred cccCCceeEEEEecccc--cCEEEEEEEEcCC
Confidence 110 1123468899998 9999999999753
|
| >3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A | Back alignment and structure |
|---|
Probab=99.75 E-value=3e-17 Score=164.83 Aligned_cols=150 Identities=15% Similarity=0.104 Sum_probs=100.6
Q ss_pred CEEEEEeccCCCCCcEEEEEEEEeCCc----ceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCc
Q psy2166 625 GIVILDILYCYEENSGVYECRATNKYG----SDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQH 700 (805)
Q Consensus 625 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g----~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~ 700 (805)
+...|.|.+++.+|+|.|+|.|.|..+ .......|.|..++... .........+|.+...+..
T Consensus 84 ~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~-------------~~~~~~~~~~~~~~~~p~~ 150 (257)
T 3gkz_A 84 NQVYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSG-------------GGGSGGGGSQIVLTQSPAI 150 (257)
T ss_dssp TEEEEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC----------------------CTTCCCCCCEECSCSE
T ss_pred ceEEEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhc-------------ccccCCCccceEEEcCCce
Confidence 456799999999999999999999732 22234567776531100 0000001134667777777
Q ss_pred ccccCCCCeEEEEEEEeecCCCCe-EEEEEEC--CEEcc------------CCCCeEEEeeCcEEEEEEcCCCCCCCEEE
Q psy2166 701 LSNLSEGEIAHFEASLIPVGDQTM-TVEFLYN--GKPIE------------ASHRIRTVHAFGMVVLEILGTKIEDTGVY 765 (805)
Q Consensus 701 ~~~v~~G~~~~l~C~~~~~g~p~~-~v~W~~~--g~~l~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 765 (805)
. .+.+|++++|.|.+. +.|.+ .+.|+|+ |..+. ...++..........|.|.+++.+|+|.|
T Consensus 151 ~-~v~~G~~v~L~C~~~--~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y 227 (257)
T 3gkz_A 151 M-SASPGEKVTLTCSAS--SSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASY 227 (257)
T ss_dssp E-EECTTCCEEEEEEES--SCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred E-EEeCCCcEEEEEEEc--cCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEE
Confidence 7 899999999999998 88877 9999983 32221 12566666667778899999999999999
Q ss_pred EEEEEcCCccEE-EEEEEEEEEeCCC
Q psy2166 766 TCRATNKWGQAE-ISVNLECVVWSPS 790 (805)
Q Consensus 766 ~C~a~N~~G~~~-~~~~l~V~~~~~~ 790 (805)
.|.|.|...... .-+.|.|...++.
T Consensus 228 ~C~~~~~~~~~fg~gt~l~v~~~~~~ 253 (257)
T 3gkz_A 228 FCHQWSSFPFTFGSGTKLEIKRAPHH 253 (257)
T ss_dssp EEEECSSSSCEECCCEEEEECCC---
T ss_pred EEEEccCCceEEcCCEEEEEEeCCCC
Confidence 999998654322 2335666554443
|
| >3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-17 Score=162.65 Aligned_cols=178 Identities=13% Similarity=0.163 Sum_probs=121.7
Q ss_pred CCCceecCCCcEEEEEEEecCCCC-----CceEEEEECCEec---------C------CCCceEEEec---CcEEEEEEc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDP-----NLKIEWIFNGKPL---------E------LGSRFKTTAD---FGFVTLDLT 129 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p-----~~~v~W~k~g~~i---------~------~~~~~~~~~~---~~~~~L~I~ 129 (805)
+..+.+.+|+.++|.|.+. +.| .+.|.|+|++..+ . ...|+.+..+ .+..+|.|.
T Consensus 8 ~~~v~~~~G~~v~L~C~~~--~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~ 85 (222)
T 3sbw_C 8 KDLYVVEYGSNMTIECKFP--VEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQIT 85 (222)
T ss_dssp CSEEEEETTSCEEEEEECC--CCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEES
T ss_pred CccEEEEcCCcEEEEeEec--CCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEc
Confidence 3456889999999999987 333 4589999975332 1 1235555432 256789999
Q ss_pred ccccCCCeEEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccc
Q psy2166 130 EVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEF 209 (805)
Q Consensus 130 ~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 209 (805)
+++.+|+|.|+|.+.+ .|.......|.|..++. .|.+...
T Consensus 86 ~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~--------------------------------------~~~~~~~- 125 (222)
T 3sbw_C 86 DVKLQDAGVYRCMISY-GGADYKRITVKVNAPYN--------------------------------------KINQRIL- 125 (222)
T ss_dssp SCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCC--------------------------------------CCEEEEE-
T ss_pred CcccccCeEEEEEEEe-CCCceeEEEEEEECCCC--------------------------------------CCCceee-
Confidence 9999999999999999 56666677777764321 1211110
Q ss_pred ccccccCCCceEEEEEEEeeCCCCCeEEEEEEC-CEEccCCCcEEEEE-EcC-eEEEEEcCCCCcccEEEEEEEEcCCee
Q psy2166 210 QHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN-GKPIEASHRIRTVH-AFG-MVVLEILGTKIEDTGVYTCRATNKWGQ 286 (805)
Q Consensus 210 ~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~-g~~l~~~~~~~~~~-~~~-~~~L~i~~~~~~d~G~Y~C~~~n~~g~ 286 (805)
..+.+|+.++|.|.+ .|.|.|.+.|+++ |..+.......... .++ ...+.+..+..+|+|.|+|.|.|..|.
T Consensus 126 ---~~~~~g~~v~L~C~~--~g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~ 200 (222)
T 3sbw_C 126 ---VVDPVTSEHELTCQA--EGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPE 200 (222)
T ss_dssp ---EEETTTTEEEEEEEE--EEBSCCEEEEEETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTT
T ss_pred ---eeecCCCcEEEEEEe--cCCCCCeEEEEECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccc
Confidence 135789999999998 5688999999998 66665433221111 111 111222234568999999999999999
Q ss_pred EEEEEEEEEec
Q psy2166 287 AEISVNLECVD 297 (805)
Q Consensus 287 ~~~~~~l~v~~ 297 (805)
....+.+.|..
T Consensus 201 ~~~~~~l~v~~ 211 (222)
T 3sbw_C 201 ENHTAELVIPE 211 (222)
T ss_dssp EEEEEEEECCC
T ss_pred eeeEEEEEecC
Confidence 99999888763
|
| >2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ... | Back alignment and structure |
|---|
Probab=99.75 E-value=6e-18 Score=165.00 Aligned_cols=176 Identities=14% Similarity=0.115 Sum_probs=120.9
Q ss_pred CCCceecCCCcEEEEEEEecCCC-CCceEEEEECC--Eec------------CCCCceEEEecCcEEEEEEcccccCCCe
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKND-PNLKIEWIFNG--KPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQG 137 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~-p~~~v~W~k~g--~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G 137 (805)
+..+.+.+|+.++|.|.+.+ +. +.+.|.|+|++ ..+ ....|+.+...++..+|.|.+++.+|+|
T Consensus 7 p~~~~v~~G~~v~L~C~v~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 85 (216)
T 2xzc_L 7 PPSVSAAPGQKVTISCSGSS-SNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEA 85 (216)
T ss_dssp CSEEEECTTCCEEEEEECCT-TTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred CCcEEecCCCeEEEEEEeec-CCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCE
Confidence 34678999999999999642 23 25789999953 221 1245788777777889999999999999
Q ss_pred EEEEEEEeCCe--eEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccccccccc
Q psy2166 138 IYTCRAWNLAG--ETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNL 215 (805)
Q Consensus 138 ~Y~C~a~n~~g--~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v 215 (805)
.|+|.|.|..+ .......|.|.... .+|.+....+... .
T Consensus 86 ~Y~C~~~~~~~~~~~~~~~~l~V~~~~--------------------------------------~~P~v~~~~~~~~-~ 126 (216)
T 2xzc_L 86 DYYCGTWDSSLNPVFGGGTKLEIKRTV--------------------------------------AAPSVFIFPPSDE-Q 126 (216)
T ss_dssp EEEEEEECTTSCEEEBCCEEEEECCCC--------------------------------------BCCEEEEECCCHH-H
T ss_pred EEEEEEEeCCCcceECCCEEEEEcCCC--------------------------------------CCCceEEeCCChh-h
Confidence 99999999875 22223456663211 3455554333222 2
Q ss_pred CCCceEEEEEEEeeCCCCC-eEEEEEECCEEccCCCcEE--EE-EEcC----eEEEEEcCCCCcccEEEEEEEEcCCeeE
Q psy2166 216 SEGEIAHFEASLIPVGDQT-MTVEFLYNGKPIEASHRIR--TV-HAFG----MVVLEILGTKIEDTGVYTCRATNKWGQA 287 (805)
Q Consensus 216 ~~g~~~~l~C~~~~~~~p~-~~i~W~k~g~~l~~~~~~~--~~-~~~~----~~~L~i~~~~~~d~G~Y~C~~~n~~g~~ 287 (805)
.+|+.++|.|.+.. ..|. ..|.|+|+|..+....... .. ..++ .+.|.|..+..+|+|.|+|.|.|.....
T Consensus 127 ~~g~~v~L~C~~~g-~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 205 (216)
T 2xzc_L 127 LKSGTASVVCLLNN-FYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSS 205 (216)
T ss_dssp HHTTEEEEEEEEEE-EBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSS
T ss_pred ccCCcEEEEEEEEe-EcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCC
Confidence 36889999999853 2455 4999999999886551111 01 1112 2479999999999999999999987554
Q ss_pred EE
Q psy2166 288 EI 289 (805)
Q Consensus 288 ~~ 289 (805)
..
T Consensus 206 ~~ 207 (216)
T 2xzc_L 206 PV 207 (216)
T ss_dssp CE
T ss_pred ce
Confidence 33
|
| >3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A | Back alignment and structure |
|---|
Probab=99.75 E-value=6.5e-17 Score=162.36 Aligned_cols=189 Identities=18% Similarity=0.148 Sum_probs=123.3
Q ss_pred CeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECC--E---ec-------------CCCCceEEEec--CcEEE
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG--K---PL-------------ELGSRFKTTAD--FGFVT 125 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g--~---~i-------------~~~~~~~~~~~--~~~~~ 125 (805)
+.+.+..+..+.+.+|+.|+|.|.+.+...+.+.|.|+|.. . .+ ....|+.+..+ .+.++
T Consensus 8 ~~v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 87 (257)
T 3gkz_A 8 KEVQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVY 87 (257)
T ss_dssp -CEEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEE
T ss_pred ccEEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEE
Confidence 34444444467899999999999998532457899999932 1 11 12357777654 45778
Q ss_pred EEEcccccCCCeEEEEEEEeCC----eeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCC
Q psy2166 126 LDLTEVYDRDQGIYTCRAWNLA----GETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGR 201 (805)
Q Consensus 126 L~I~~~~~~D~G~Y~C~a~n~~----g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (805)
|.|.+++.+|+|.|.|.|.|.. ........|.|......... .......
T Consensus 88 L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~---------------------------~~~~~~~ 140 (257)
T 3gkz_A 88 LQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGG---------------------------GSGGGGS 140 (257)
T ss_dssp EEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC------------------------------------CTTCCC
T ss_pred EEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhccc---------------------------ccCCCcc
Confidence 9999999999999999999862 22233456666543110000 0000012
Q ss_pred CCceecccccccccCCCceEEEEEEEeeCCCCCe-EEEEEEC--CEEcc------------CCCcEEEEEEcCeEEEEEc
Q psy2166 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYN--GKPIE------------ASHRIRTVHAFGMVVLEIL 266 (805)
Q Consensus 202 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~-~i~W~k~--g~~l~------------~~~~~~~~~~~~~~~L~i~ 266 (805)
+|.+...+... .+.+|++++|.|.+ .+.+.+ .+.|||. +..+. ...++..........|.|.
T Consensus 141 ~~~~~~~p~~~-~v~~G~~v~L~C~~--~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 217 (257)
T 3gkz_A 141 QIVLTQSPAIM-SASPGEKVTLTCSA--SSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTIS 217 (257)
T ss_dssp CCCEECSCSEE-EECTTCCEEEEEEE--SSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred ceEEEcCCceE-EEeCCCcEEEEEEE--ccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEEC
Confidence 34455444433 48899999999998 566666 8999983 33221 1245555455567789999
Q ss_pred CCCCcccEEEEEEEEcCC
Q psy2166 267 GTKIEDTGVYTCRATNKW 284 (805)
Q Consensus 267 ~~~~~d~G~Y~C~~~n~~ 284 (805)
+++.+|+|.|+|.+.+..
T Consensus 218 ~v~~~D~G~Y~C~~~~~~ 235 (257)
T 3gkz_A 218 SMEAEDAASYFCHQWSSF 235 (257)
T ss_dssp SCCGGGCEEEEEEECSSS
T ss_pred CCChHHCEEEEEEEccCC
Confidence 999999999999998754
|
| >3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=167.28 Aligned_cols=195 Identities=15% Similarity=0.124 Sum_probs=126.3
Q ss_pred cccCCCeEEEEEEEeeCCCCCcEEEEEEC--CEEc-----------------cCCCceEEEee--CCEEEEEEccCCCCC
Q psy2166 507 QLKEGQSAHFEARLTPVTDPDLVVEWFYN--GKKL-----------------PHGHRYRTFHD--FGIVILDILYCYEEN 565 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~p~~~v~W~~~--g~~l-----------------~~~~~~~~~~~--~~~~~L~i~~v~~~d 565 (805)
.+.+|++++|.|.+.+...+.+.+.|+|. +..+ ....|+.+..+ .+...|.|.+++.+|
T Consensus 12 ~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D 91 (253)
T 3uzq_A 12 LVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSLTSGD 91 (253)
T ss_dssp EECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred eecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCCCccc
Confidence 38899999999999842234779999982 2111 11246666543 346779999999999
Q ss_pred CEEEEEEEEcCCcceE-EEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEE
Q psy2166 566 SGVYECRATNKYGSDV-TKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYEC 644 (805)
Q Consensus 566 ~G~Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 644 (805)
+|.|.|.|.|..+... ..+.|.|...+. ...
T Consensus 92 sG~Y~C~~~~~~~~~~~~~~~l~V~~~~~-------------------------------------------~~~----- 123 (253)
T 3uzq_A 92 TAVYYCSRGWEGFAYWGQGTLVTVSAGGG-------------------------------------------GSG----- 123 (253)
T ss_dssp CEEEEEEECSSSCCEECCCEEEEECSSSC-------------------------------------------CCC-----
T ss_pred CEEEEEEEeeCCccEECCCcEEEEecCCc-------------------------------------------ccc-----
Confidence 9999999988543321 122222221110 000
Q ss_pred EEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCe
Q psy2166 645 RATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM 724 (805)
Q Consensus 645 ~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~ 724 (805)
+... ..+ ..+|.+...+... .+.+|++++|.|.+. +.|.+
T Consensus 124 ------~~~~----~~~---------------------------~~~~~v~~~p~~~-~v~~G~~v~L~C~~~--~~~~~ 163 (253)
T 3uzq_A 124 ------GGGS----GGG---------------------------GSELVMTQTPASL-AVSLGQRATISCRAS--ENVDR 163 (253)
T ss_dssp ------C----------------------------------------CCEEEECSEE-EECTTSCEEEEEEES--SCCEE
T ss_pred ------cccc----CCC---------------------------cccceEECcCCeE-EEeCCCCEEEEEEec--Ccccc
Confidence 0000 000 0345555566666 899999999999998 88887
Q ss_pred ----EEEEEEC--CEEcc------------CCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccE-EEEEEEEEE
Q psy2166 725 ----TVEFLYN--GKPIE------------ASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA-EISVNLECV 785 (805)
Q Consensus 725 ----~v~W~~~--g~~l~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~ 785 (805)
.+.|+|+ |..+. ...++.....+....|+|.+++.+|+|.|.|.|.|..+.. ..-++|.|.
T Consensus 164 ~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~ 243 (253)
T 3uzq_A 164 YGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIK 243 (253)
T ss_dssp TTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEEC
T ss_pred CCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEc
Confidence 9999994 32211 1256666666777899999999999999999999976533 334567776
Q ss_pred EeCC
Q psy2166 786 VWSP 789 (805)
Q Consensus 786 ~~~~ 789 (805)
..++
T Consensus 244 ~~~~ 247 (253)
T 3uzq_A 244 RPLE 247 (253)
T ss_dssp CC--
T ss_pred CCCC
Confidence 5444
|
| >1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-17 Score=164.67 Aligned_cols=170 Identities=15% Similarity=0.133 Sum_probs=119.8
Q ss_pred CCCceecCCCcEEEEEEEecCCCC----CceEEEEECC--Eec------------CCCCceEEEecCcEEEEEEcccccC
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDP----NLKIEWIFNG--KPL------------ELGSRFKTTADFGFVTLDLTEVYDR 134 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p----~~~v~W~k~g--~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~ 134 (805)
+..+.+.+|+.++|.|.+. +.| .+.|.|+|++ ..+ ....|+.+...++..+|.|.+++.+
T Consensus 8 p~~~~v~~G~~v~L~C~~~--~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 85 (240)
T 1moe_A 8 PASLAVSLGQRATMSCRAG--ESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEAD 85 (240)
T ss_dssp CSEEEECTTSCEEEEEEES--SCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred CCeEEecCCCCEEEEEeCC--CccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChh
Confidence 4467899999999999998 566 7899999952 211 1245888877777889999999999
Q ss_pred CCeEEEEEEEeCCee-EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccccccc
Q psy2166 135 DQGIYTCRAWNLAGE-TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLS 213 (805)
Q Consensus 135 D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 213 (805)
|+|.|+|.|.|..+. ......|.|...+.. ..++.+...+...
T Consensus 86 D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~-----------------------------------~~~~~~~~~~~~~- 129 (240)
T 1moe_A 86 DVATYYCQQTNEDPYTFGGGTKLEIKGGGSG-----------------------------------GGGEVQLQQSGAE- 129 (240)
T ss_dssp GCEEEEEEECSSSSCCBCCCEEEEECCCSCC-----------------------------------CCCCCEEEECCCE-
T ss_pred hCEEEEEEEccCCceeecCCEEEEEecCCCC-----------------------------------CCceEEEeCCCce-
Confidence 999999999997554 233456776543210 0122233333333
Q ss_pred ccCCCceEEEEEEEeeCCCC--CeEEEEEEC--CEEcc-----------------CCCcEEEEEE--cCeEEEEEcCCCC
Q psy2166 214 NLSEGEIAHFEASLIPVGDQ--TMTVEFLYN--GKPIE-----------------ASHRIRTVHA--FGMVVLEILGTKI 270 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~p--~~~i~W~k~--g~~l~-----------------~~~~~~~~~~--~~~~~L~i~~~~~ 270 (805)
.+.+|+.++|.|.+ .+.| .+.+.|+|+ |..+. ...++..... .....|.|.+++.
T Consensus 130 ~v~~G~~v~L~C~~--~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 207 (240)
T 1moe_A 130 LVEPGASVKLSCTA--SGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTS 207 (240)
T ss_dssp EECTTCCEEEEEEE--ESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred EEeCCCcEEEEEEE--cCccCCCCEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCH
Confidence 47899999999998 4554 469999995 32221 1234444333 3457899999999
Q ss_pred cccEEEEEEEEc
Q psy2166 271 EDTGVYTCRATN 282 (805)
Q Consensus 271 ~d~G~Y~C~~~n 282 (805)
+|+|.|+|.|.+
T Consensus 208 ~D~G~Y~C~a~~ 219 (240)
T 1moe_A 208 EDTAVYYCAPFG 219 (240)
T ss_dssp GGCEEEEEEECS
T ss_pred HHCEEEEEEEEe
Confidence 999999999984
|
| >4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.2e-18 Score=167.77 Aligned_cols=181 Identities=18% Similarity=0.232 Sum_probs=122.7
Q ss_pred CceecCCCcEEEEEEEecCCC---CCceEEEEECCEec-------------CCCCceEEEec---CcEEEEEEcccccCC
Q psy2166 75 EFKLGEAQPLHLEAQVEPKND---PNLKIEWIFNGKPL-------------ELGSRFKTTAD---FGFVTLDLTEVYDRD 135 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~---p~~~v~W~k~g~~i-------------~~~~~~~~~~~---~~~~~L~I~~~~~~D 135 (805)
.+.+.+|+.++|.|.+.+... ..+.|.|+|++... ....|+.+..+ .+..+|.|.+++.+|
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D 83 (222)
T 4i0k_A 4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD 83 (222)
T ss_dssp CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence 467899999999999883211 23789999987433 12345544331 124579999999999
Q ss_pred CeEEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccccccccc
Q psy2166 136 QGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNL 215 (805)
Q Consensus 136 ~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v 215 (805)
+|.|+|.+.+.. .......|.|..+ ..+|.+...+.. .+
T Consensus 84 ~G~Y~C~~~~~~-~~~~~~~l~V~~~--------------------------------------~~~p~i~~~~~~--~v 122 (222)
T 4i0k_A 84 EGSYTCFVSIQD-FDSAAVSLQVAAP--------------------------------------YSKPSMTLEPNK--DL 122 (222)
T ss_dssp CSCEEEEEEECC-CCCCCCCCCCCBC--------------------------------------CCCCEEECCC------
T ss_pred CEEEEEEEEeCC-CceEEEEEEEEcC--------------------------------------CCCCcEEeCCCc--ee
Confidence 999999999852 2233333333321 123555544332 37
Q ss_pred CCCceEEEEEEEeeCCCCCeEEEEEE-CCEEccCCCcEEEEEE-cC-eEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEE
Q psy2166 216 SEGEIAHFEASLIPVGDQTMTVEFLY-NGKPIEASHRIRTVHA-FG-MVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 292 (805)
Q Consensus 216 ~~g~~~~l~C~~~~~~~p~~~i~W~k-~g~~l~~~~~~~~~~~-~~-~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~ 292 (805)
.+|+.++|.|.+. .+.|.+.+.|++ ++..+........... .+ ...|.|.+++.+|+|.|+|.|.|..|....++.
T Consensus 123 ~~G~~~~l~C~~~-~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 201 (222)
T 4i0k_A 123 RPGNMVTITCSSY-QGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGS 201 (222)
T ss_dssp -CCSEEEEEEEEE-EEBSCCEEEEECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEE
T ss_pred cCCceEEEEEecc-cccCCCeEEEEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEE
Confidence 7899999999984 377889999999 5665544332222221 22 346889999999999999999999999999999
Q ss_pred EEEec
Q psy2166 293 LECVD 297 (805)
Q Consensus 293 l~v~~ 297 (805)
|.|..
T Consensus 202 l~V~~ 206 (222)
T 4i0k_A 202 VTITG 206 (222)
T ss_dssp EECCC
T ss_pred EEEeC
Confidence 98874
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=161.33 Aligned_cols=174 Identities=12% Similarity=0.154 Sum_probs=118.2
Q ss_pred CceecCCCcEEEEEEEecC--CCCCceEEEEECCEecC------------CCCceEEEecCcEEEEEEcccccCCCeEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPK--NDPNLKIEWIFNGKPLE------------LGSRFKTTADFGFVTLDLTEVYDRDQGIYT 140 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~--~~p~~~v~W~k~g~~i~------------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 140 (805)
.+.+.+|++++|.|.+... +.|.+.+.|+|++..+. ...|..+... +..+|.|.+++.+|+|.|+
T Consensus 3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~-~~~~L~I~~v~~~D~G~Y~ 81 (201)
T 1dr9_A 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDIT-NNLSIVILALRPSDEGTYE 81 (201)
T ss_dssp EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEEST-TTTEEEECSCCGGGCEEEE
T ss_pred eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccC-CCcEEEEecccchhCeEEE
Confidence 4678999999999998632 23677999999998763 1123333222 2348999999999999999
Q ss_pred EEEEeCCeeE-----EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccccccccc
Q psy2166 141 CRAWNLAGET-----FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNL 215 (805)
Q Consensus 141 C~a~n~~g~~-----~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v 215 (805)
|.|.|..|.. .....|.|..+. ..|.+... ..
T Consensus 82 C~~~~~~g~~~~~~~~~~~~l~V~~~~--------------------------------------~~p~~~~~-----~~ 118 (201)
T 1dr9_A 82 CVVLKYEKDAFKREHLAEVTLSVKADF--------------------------------------PTPSISDF-----EI 118 (201)
T ss_dssp EEEEECCTTSCEEEEEEEEEEEEECCC--------------------------------------CCCEEEEE-----EC
T ss_pred EEEEcCCCCccccccccEEEEEEcCCC--------------------------------------CCCceEec-----cC
Confidence 9999976543 335556554321 12333321 13
Q ss_pred CCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEc-CeEEE-EEcCCCCcccEEEEEEEEcCCeeEEEEEEE
Q psy2166 216 SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF-GMVVL-EILGTKIEDTGVYTCRATNKWGQAEISVNL 293 (805)
Q Consensus 216 ~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~-~~~~L-~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l 293 (805)
..|+.++|.|.+. .+.|.|.|.|+|+|..+............ +...+ .+..+..+|.|.|+|.|.|..+..+..+++
T Consensus 119 ~~g~~~~l~C~~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~ 197 (201)
T 1dr9_A 119 PTSNIRRIICSTS-GGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW 197 (201)
T ss_dssp SSTTEEEEEEEEE-EESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred CCCCeEEEEEecC-CccCCCEEEEEECCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence 4688999999983 37899999999999988754332222222 22122 233445689999999999999887776654
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.9e-17 Score=155.09 Aligned_cols=157 Identities=15% Similarity=0.178 Sum_probs=115.4
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec----------CCCCceEEEecCcEEEEEEcccccCCCeEEEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL----------ELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i----------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
.+...+|++|+|.|.....+.+.+.|.|+| ++..| ..+.|+.+..++ +|.|.+++.+|+|.|+|.
T Consensus 8 ~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ng---sL~I~~v~~~DsG~Y~c~ 84 (182)
T 1hnf_A 8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG---TLKIKHLKTDDQDIYKVS 84 (182)
T ss_dssp EEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTS---CEEECSCCGGGCEEEEEE
T ss_pred EEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCC---CEEECCCChhhCEEEEEE
Confidence 467789999999995432235678999999 98877 356788887655 799999999999999999
Q ss_pred EEeCCeeEEE--EEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCce
Q psy2166 143 AWNLAGETFT--STTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEI 220 (805)
Q Consensus 143 a~n~~g~~~~--~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~ 220 (805)
|.|..|.... ...|.|..+. .+|.+.. .+..
T Consensus 85 ~~n~~g~~~~~~~~~L~V~~~~--------------------------------------~~P~i~~---------~~~~ 117 (182)
T 1hnf_A 85 IYDTKGKNVLEKIFDLKIQERV--------------------------------------SKPKISW---------TCIN 117 (182)
T ss_dssp EEETTSCEEEEEEEEEEEECCC--------------------------------------CCCEEEE---------ETTT
T ss_pred EEeCCCceeEEEEEEEEEcCcC--------------------------------------CCCEEEE---------ccCc
Confidence 9998876543 4556665321 2344433 1235
Q ss_pred EEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEE
Q psy2166 221 AHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294 (805)
Q Consensus 221 ~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~ 294 (805)
++|.|.+ .+.|.+.|.|+++|..+. . ... .|.+.. ..+|+|.|+|.|.|..+..+....+.
T Consensus 118 v~L~C~~--~~~p~~~~~W~~~g~~l~-~-------~~~--~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~ 178 (182)
T 1hnf_A 118 TTLTCEV--MNGTDPELNLYQDGKHLK-L-------SQR--VITHKW-TTSLSAKFKCTAGNKVSKESSVEPVS 178 (182)
T ss_dssp TEEEEEC--SSCSSCEEEEEESSCEEE-E-------ESS--CEEEEC-CSCEEEEEEEEEECSSCEEEEEEEEE
T ss_pred EEEEeEc--cCCCCCEEEEEECCEECC-C-------CCc--EEEEec-ccCCCcEEEEEEEeCCCCcEEcceec
Confidence 8999988 677789999999998871 1 111 233333 57899999999999998887766654
|
| >3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-17 Score=165.42 Aligned_cols=185 Identities=14% Similarity=0.121 Sum_probs=121.7
Q ss_pred CeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCE-----ec---------CCCCceEEEecCcEEEEEEccc
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGK-----PL---------ELGSRFKTTADFGFVTLDLTEV 131 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~-----~i---------~~~~~~~~~~~~~~~~L~I~~~ 131 (805)
+.+... +..+.+.+|+.++|.|.+. +.|.+.|.|+|++. .+ ....|+.+..+++..+|.|.++
T Consensus 13 ~~v~~~-p~~~~v~~G~~v~L~C~~~--~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 89 (276)
T 3auv_A 13 IQMTQS-PSSLSASVGDRVTITCRAS--QDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSL 89 (276)
T ss_dssp CCEEEE-CSEEECCTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred eeEEeC-CCeEEEcCCCCEEEEeEcC--CCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccC
Confidence 344433 4467899999999999998 57788999999641 12 1245888877777889999999
Q ss_pred ccCCCeEEEEEEEeCCee-EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccc
Q psy2166 132 YDRDQGIYTCRAWNLAGE-TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQ 210 (805)
Q Consensus 132 ~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 210 (805)
+.+|+|.|+|.+.|..+. ......|.|...+..... .......|+.+...+.
T Consensus 90 ~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~---------------------------~~~~~~~p~~~~~~p~ 142 (276)
T 3auv_A 90 QPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIE---------------------------GRSGGGGSEVQLVESG 142 (276)
T ss_dssp CGGGCEEEEEEECSSSSCCCCCCEEEEC--------------------------------------------CCEEEEEC
T ss_pred ChhhCEEEEEEEecCCcccccCCEEEEEecCCCcccc---------------------------ccccccCcceEEECCC
Confidence 999999999999987543 222345666543210000 0000001222233333
Q ss_pred cccccCCCceEEEEEEEeeCCCC--CeEEEEEECC--EEc-----------------cCCCcEEEEEE--cCeEEEEEcC
Q psy2166 211 HLSNLSEGEIAHFEASLIPVGDQ--TMTVEFLYNG--KPI-----------------EASHRIRTVHA--FGMVVLEILG 267 (805)
Q Consensus 211 ~~~~v~~g~~~~l~C~~~~~~~p--~~~i~W~k~g--~~l-----------------~~~~~~~~~~~--~~~~~L~i~~ 267 (805)
.. .+.+|++++|.|.+ .+.+ .+.+.|||++ ..+ ....++..... .+...|.|.+
T Consensus 143 ~~-~v~~G~~v~L~C~~--~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 219 (276)
T 3auv_A 143 GG-LVQPGGSLRLSCAA--SGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNS 219 (276)
T ss_dssp CE-EECTTCCEEEEEEE--ESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred ce-EecCCCeEEEEEEe--cCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECC
Confidence 33 58899999999998 4444 5899999963 211 01245554443 3457899999
Q ss_pred CCCcccEEEEEEEEcC
Q psy2166 268 TKIEDTGVYTCRATNK 283 (805)
Q Consensus 268 ~~~~d~G~Y~C~~~n~ 283 (805)
++.+|+|.|+|.+.|.
T Consensus 220 v~~~DsG~Y~C~a~n~ 235 (276)
T 3auv_A 220 LRAEDTAVYYCARFVF 235 (276)
T ss_dssp CCGGGCEEEEEEEECS
T ss_pred CChhHCEEEEEEEEcC
Confidence 9999999999999997
|
| >3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-17 Score=160.00 Aligned_cols=170 Identities=18% Similarity=0.244 Sum_probs=121.2
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEECC--EEc------------cCCCceEEEEeCcEEEEEEcccCcCCceEEEEEE
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFHNG--KPI------------FHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRA 381 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~g--~~l------------~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a 381 (805)
+.+|+.++|.|.+. +.|.+.+.|+|.+ ... ....++.+........|.|.+++.+|+|.|+|.|
T Consensus 13 v~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 90 (213)
T 3r06_A 13 ASLGDRVTINCQAS--QDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYYCQQ 90 (213)
T ss_dssp ECTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEE
T ss_pred ecCCCcEEEEEEeC--CCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEEEEec
Confidence 88999999999998 6688999999832 110 1245677666667788999999999999999999
Q ss_pred EeCceeeE-EEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEE
Q psy2166 382 WNKYGEDF-TRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEAR 460 (805)
Q Consensus 382 ~n~~g~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (805)
.|..+... ....|.|..
T Consensus 91 ~~~~~~~~~~~~~l~V~~-------------------------------------------------------------- 108 (213)
T 3r06_A 91 YYNYPWTFGPGTKLEIKR-------------------------------------------------------------- 108 (213)
T ss_dssp CSSSSCEECCCEEEEECC--------------------------------------------------------------
T ss_pred ccCCceEEcCCceEEEec--------------------------------------------------------------
Confidence 98764332 234555421
Q ss_pred EeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEcc
Q psy2166 461 LTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLP 540 (805)
Q Consensus 461 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~ 540 (805)
...+|.+....+... +..|+.++|.|.+.+...|.+.++|+|||..+.
T Consensus 109 -------------------------------~~~~p~v~~~~~~~~-~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~ 156 (213)
T 3r06_A 109 -------------------------------ADAKPTVSIFPPSSE-QLGTGSATLVCFVNNFYPKDINVKWKVDGSEKR 156 (213)
T ss_dssp -------------------------------CCBCCEEEEECCCHH-HHTTTEEEEEEEEEEEBSSCEEEEEEETTEEEC
T ss_pred -------------------------------cCCCceeeeeCCCce-ecCCCCcEEEEEEeeecCCceEEEEEECCcccC
Confidence 135677776655554 567888999999996333357999999999987
Q ss_pred CCC--ceEEE--eeCC---EEEEEEccCCCCCCEEEEEEEEcCCcceE
Q psy2166 541 HGH--RYRTF--HDFG---IVILDILYCYEENSGVYECRATNKYGSDV 581 (805)
Q Consensus 541 ~~~--~~~~~--~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 581 (805)
.+. ..... .++. .+.|.|.....+|+|.|+|.|.|......
T Consensus 157 ~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~~ 204 (213)
T 3r06_A 157 DGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTAA 204 (213)
T ss_dssp TTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSC
T ss_pred CceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCcc
Confidence 541 11111 1111 23588888888899999999999865533
|
| >3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-17 Score=163.42 Aligned_cols=175 Identities=13% Similarity=0.097 Sum_probs=123.9
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEECC--E------------ecCCCCceEEEecCcEEEEEEcccccCCCeE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG--K------------PLELGSRFKTTADFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g--~------------~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 138 (805)
+..+.+.+|++++|.|.+. +.+.+.|.|+|++ . ......|+.+...++..+|.|.+++.+|+|.
T Consensus 31 p~~~~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 108 (237)
T 3sob_L 31 PSSLSASVGDRVTITCRAS--QDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFAT 108 (237)
T ss_dssp CSEEEEETTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred CCeEEEeCCCcEEEEEecC--CCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeE
Confidence 3367899999999999998 5678899999932 1 1123468888777778899999999999999
Q ss_pred EEEEEEeCCeeE-EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCC
Q psy2166 139 YTCRAWNLAGET-FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 217 (805)
Q Consensus 139 Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~ 217 (805)
|+|.+.+..+.. .....+.|.... .+|.+........ +.+
T Consensus 109 Y~C~~~~~~~~~~~~~~~l~V~~~~--------------------------------------~~p~v~~~~~~~~-~~~ 149 (237)
T 3sob_L 109 YYCQQSYTTPPTFGQGTKVEIKRTV--------------------------------------AAPSVFIFPPSDE-QLK 149 (237)
T ss_dssp EEEEECSSSSCEECCCEEEEEECCC--------------------------------------BCCEEEEECCCHH-HHH
T ss_pred EEEeeccCCceEEcCcEEEEEecCC--------------------------------------CCCceEEeCCChh-hcc
Confidence 999998876432 223456664311 3465555443332 446
Q ss_pred CceEEEEEEEeeCCCC-CeEEEEEECCEEccCCC-cEE-EEE-EcC----eEEEEEcCCCCcccEEEEEEEEcCCeeEEE
Q psy2166 218 GEIAHFEASLIPVGDQ-TMTVEFLYNGKPIEASH-RIR-TVH-AFG----MVVLEILGTKIEDTGVYTCRATNKWGQAEI 289 (805)
Q Consensus 218 g~~~~l~C~~~~~~~p-~~~i~W~k~g~~l~~~~-~~~-~~~-~~~----~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~ 289 (805)
|+.++|.|.+.. +.| .+.+.|+|+|..+.... ... ... .++ ...|.|.....+|+|.|+|.|.|.......
T Consensus 150 g~~v~l~C~~~~-~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~ 228 (237)
T 3sob_L 150 SGTASVVCLLNN-FYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPV 228 (237)
T ss_dssp HTEEEEEEEEEE-EBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCE
T ss_pred CCceEEEEEEcc-cCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCce
Confidence 889999999853 245 68999999999887532 100 000 111 356889999999999999999998754433
|
| >3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.5e-17 Score=162.18 Aligned_cols=185 Identities=14% Similarity=0.137 Sum_probs=119.2
Q ss_pred cCCCCceecCCCcEEEEEEEecCCCCCceEEEEECC-----E---------ecCCCCceEEEecCcEEEEEEcccccCCC
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG-----K---------PLELGSRFKTTADFGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g-----~---------~i~~~~~~~~~~~~~~~~L~I~~~~~~D~ 136 (805)
..+..+.+.+|+.++|.|.+. +.|.+.+.|+|+. . ......|+.+...+..++|.|.+++.+|+
T Consensus 9 ~~p~~~~v~~G~~v~L~C~~~--~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 86 (250)
T 3esu_F 9 QSTSSLSASLGDRVTISCRAS--QDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDI 86 (250)
T ss_dssp CSCSEEEECTTCCEEEEEEES--SCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred ecCCEEEeeCCCcEEEEEEec--ccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhC
Confidence 344467899999999999998 6777899999943 1 11224588777777888999999999999
Q ss_pred eEEEEEEEeCCeeEE-EEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccccccccc
Q psy2166 137 GIYTCRAWNLAGETF-TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNL 215 (805)
Q Consensus 137 G~Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v 215 (805)
|.|.|.+.|..+... ....|.|...+.......... .......++.+...+... .+
T Consensus 87 G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~-~v 143 (250)
T 3esu_F 87 GTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGG----------------------GGSGGGGSEVQLQQSGPE-LV 143 (250)
T ss_dssp EEEEEEECSSSSCEECCCEEEEEC----------------------------------------------CEECCCE-EE
T ss_pred EEEEEEEeeCCCceECCCEEEEEECCCCccccccccc----------------------ccccCcccceEEecCCce-EE
Confidence 999999998755432 234566654211000000000 000000122222233333 47
Q ss_pred CCCceEEEEEEEeeCCCC--CeEEEEEEC--CEEcc-----------------CCCcEEEEEE--cCeEEEEEcCCCCcc
Q psy2166 216 SEGEIAHFEASLIPVGDQ--TMTVEFLYN--GKPIE-----------------ASHRIRTVHA--FGMVVLEILGTKIED 272 (805)
Q Consensus 216 ~~g~~~~l~C~~~~~~~p--~~~i~W~k~--g~~l~-----------------~~~~~~~~~~--~~~~~L~i~~~~~~d 272 (805)
.+|+.++|.|.+ .+.+ .+.+.|||+ +..+. ...++..... ....+|.|.+++.+|
T Consensus 144 ~~G~~v~L~C~~--~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D 221 (250)
T 3esu_F 144 KPGASVKISCKD--SGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVD 221 (250)
T ss_dssp CTTCCEEEEEEC--CSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred cCCceEEEEEEe--cCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCccc
Confidence 899999999998 4545 789999997 43321 1244544433 346789999999999
Q ss_pred cEEEEEEEEc
Q psy2166 273 TGVYTCRATN 282 (805)
Q Consensus 273 ~G~Y~C~~~n 282 (805)
+|.|+|.+.+
T Consensus 222 sG~Y~C~~~~ 231 (250)
T 3esu_F 222 SAVYFCARSG 231 (250)
T ss_dssp CEEEEEEEEC
T ss_pred CEEEEEEEec
Confidence 9999999997
|
| >3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-17 Score=164.66 Aligned_cols=196 Identities=16% Similarity=0.154 Sum_probs=126.6
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec-----------------CCCCceEEEec--CcEEEEEEccc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL-----------------ELGSRFKTTAD--FGFVTLDLTEV 131 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i-----------------~~~~~~~~~~~--~~~~~L~I~~~ 131 (805)
+..+.+.+|+.|+|.|.+.+...+.+.|.|+|. +..+ ....|+.+..+ .+.++|.|.++
T Consensus 8 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 87 (253)
T 3uzq_A 8 SGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSL 87 (253)
T ss_dssp CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred CCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCC
Confidence 336789999999999999842234679999992 2111 12357777654 34778999999
Q ss_pred ccCCCeEEEEEEEeCCeeEE-EEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccc
Q psy2166 132 YDRDQGIYTCRAWNLAGETF-TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQ 210 (805)
Q Consensus 132 ~~~D~G~Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 210 (805)
+.+|+|.|+|.+.|..+... ....|.|........... ......+|.+...+.
T Consensus 88 ~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~--------------------------~~~~~~~~~v~~~p~ 141 (253)
T 3uzq_A 88 TSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGG--------------------------SGGGGSELVMTQTPA 141 (253)
T ss_dssp CGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC-----------------------------------CCEEEECS
T ss_pred CcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccc--------------------------cCCCcccceEECcCC
Confidence 99999999999998655432 345566653210000000 000012355555554
Q ss_pred cccccCCCceEEEEEEEeeCCCCCe----EEEEEEC--CEEcc------------CCCcEEEEEEcCeEEEEEcCCCCcc
Q psy2166 211 HLSNLSEGEIAHFEASLIPVGDQTM----TVEFLYN--GKPIE------------ASHRIRTVHAFGMVVLEILGTKIED 272 (805)
Q Consensus 211 ~~~~v~~g~~~~l~C~~~~~~~p~~----~i~W~k~--g~~l~------------~~~~~~~~~~~~~~~L~i~~~~~~d 272 (805)
.. .+.+|++++|.|.+ .+.+.+ .+.|||+ +..+. ...++..........|.|.+++.+|
T Consensus 142 ~~-~v~~G~~v~L~C~~--~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 218 (253)
T 3uzq_A 142 SL-AVSLGQRATISCRA--SENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADD 218 (253)
T ss_dssp EE-EECTTSCEEEEEEE--SSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred eE-EEeCCCCEEEEEEe--cCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHH
Confidence 44 48899999999998 566665 8999994 22211 1245555455567789999999999
Q ss_pred cEEEEEEEEcCCeeE-EEEEEEEEec
Q psy2166 273 TGVYTCRATNKWGQA-EISVNLECVD 297 (805)
Q Consensus 273 ~G~Y~C~~~n~~g~~-~~~~~l~v~~ 297 (805)
+|.|+|.+.|..+.. .....|.|..
T Consensus 219 sG~Y~C~~~n~~~~~fg~gt~l~v~~ 244 (253)
T 3uzq_A 219 VATYFCQRSNEVPWTFGGGTKLEIKR 244 (253)
T ss_dssp CEEEEEEECSSSSCCBCCCEEEEECC
T ss_pred CEEEEEEEccCCCcEECCCEEEEEcC
Confidence 999999999865332 2234455543
|
| >1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.74 E-value=9.7e-19 Score=170.14 Aligned_cols=173 Identities=13% Similarity=0.109 Sum_probs=120.3
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEecC------------CCCceEEEecCcEEEEEEcccccCCCeE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPLE------------LGSRFKTTADFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i~------------~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 138 (805)
+..+.+.+|+.++|.|.+. +.|.+.|.|+|+ |..+. ...|+.+...++..+|.|.+++.+|+|.
T Consensus 6 p~~~~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 83 (212)
T 1nfd_E 6 PSSASVTVGETVKITCSGD--QLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAA 83 (212)
T ss_dssp CSEEEEETTSCCCEEEEET--TGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSE
T ss_pred CCeEEEeCCCcEEEEEecC--CCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEE
Confidence 4467899999999999987 566678999985 33321 1468887777778899999999999999
Q ss_pred EEEEEEeC-CeeE--EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccccccccc
Q psy2166 139 YTCRAWNL-AGET--FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNL 215 (805)
Q Consensus 139 Y~C~a~n~-~g~~--~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v 215 (805)
|+|.|.|. .+.. .....|.|...+ ..+|.+....... .+
T Consensus 84 Y~C~~~n~~~~~~~~~~~~~l~V~~~~-------------------------------------~~~p~v~~~~~~~-~~ 125 (212)
T 1nfd_E 84 YYCLSSYGDNNDLVFGSGTQLTVLRGP-------------------------------------KSSPKVTVFPPSP-EE 125 (212)
T ss_dssp EEEEEEETTTTEEEECCCEEEEEECCC-------------------------------------CBCCEEECCCCCH-HH
T ss_pred EEEEEEcccCcccccCCceEEEEccCC-------------------------------------CCCCEEEeeCCch-Hh
Confidence 99999973 2211 223445554321 1345555433332 24
Q ss_pred CCCceEEEEEEEeeCCCCC-eEEEEEECCEEccCCCcEEEEE--EcC---eEEEEEcCCCCcccEEEEEEEEcCCee
Q psy2166 216 SEGEIAHFEASLIPVGDQT-MTVEFLYNGKPIEASHRIRTVH--AFG---MVVLEILGTKIEDTGVYTCRATNKWGQ 286 (805)
Q Consensus 216 ~~g~~~~l~C~~~~~~~p~-~~i~W~k~g~~l~~~~~~~~~~--~~~---~~~L~i~~~~~~d~G~Y~C~~~n~~g~ 286 (805)
.+|+.++|.|.+.. ..|. +.|.|+|+|..+.......... .++ .+.|.|.++..+|+|.|+|.|.|..+.
T Consensus 126 ~~g~~v~L~C~~~g-~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 201 (212)
T 1nfd_E 126 LRTNKATLVCLVND-FYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGET 201 (212)
T ss_dssp HHTTEECCCEEEEE-EBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTT
T ss_pred ccCCceEEEEEEEe-eECCccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCce
Confidence 57999999999853 2244 8999999999886542211000 111 245899999999999999999998765
|
| >1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=163.18 Aligned_cols=180 Identities=11% Similarity=0.114 Sum_probs=119.1
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEecC-----------------CCCceEEEec--CcEEEEEEccc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPLE-----------------LGSRFKTTAD--FGFVTLDLTEV 131 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i~-----------------~~~~~~~~~~--~~~~~L~I~~~ 131 (805)
+..+.+.+|+.++|.|.+.+...+.+.|.|+|+ |..+. ...|+.+..+ ++..+|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (219)
T 1c1e_H 7 SGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNL 86 (219)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSC
T ss_pred CCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCC
Confidence 336789999999999999842223689999997 33221 1357777654 35678999999
Q ss_pred ccCCCeEEEEEEEeCCee----EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceec
Q psy2166 132 YDRDQGIYTCRAWNLAGE----TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTS 207 (805)
Q Consensus 132 ~~~D~G~Y~C~a~n~~g~----~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 207 (805)
+.+|+|.|+|.+.|..+. ....+.|.|...+ ..+|.+..
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~-------------------------------------~~~P~i~~ 129 (219)
T 1c1e_H 87 KNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAK-------------------------------------TTPPSVYP 129 (219)
T ss_dssp CGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCC-------------------------------------CBCCEEEE
T ss_pred CcccCEEEEEEEeccCcccceeecCceEEEEecCC-------------------------------------CCCCeEEE
Confidence 999999999999997631 1234566665421 12344443
Q ss_pred ccccccccCCCceEEEEEEEeeCC-CCCe-EEEEEECCEEccCCCcEEEEEEc---CeEEEEEcCCCCcccEEEEEEEEc
Q psy2166 208 EFQHLSNLSEGEIAHFEASLIPVG-DQTM-TVEFLYNGKPIEASHRIRTVHAF---GMVVLEILGTKIEDTGVYTCRATN 282 (805)
Q Consensus 208 ~~~~~~~v~~g~~~~l~C~~~~~~-~p~~-~i~W~k~g~~l~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~n 282 (805)
..+.. .+.+|+.++|.|.+. + .|.| .|.|+|+|..+...........+ ....|.|..... |.|.|+|.|.|
T Consensus 130 ~~~~~-~~~~g~~v~L~C~~~--g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n 205 (219)
T 1c1e_H 130 LAPGS-AAQTNSMVTLGCLVK--GYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPR-PSETVTCNVAH 205 (219)
T ss_dssp ECCCS-SSCCSSEEEEEEEEE--EEBSSCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEEESSST-TTSCCEEEEEE
T ss_pred ecCcc-ccccCCeEEEEEEcc--cccCCCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEEecccC-CCCEEEEEEEe
Confidence 33222 367899999999984 5 7777 99999999865311000000111 124688854444 66999999999
Q ss_pred CCeeEEEEEEE
Q psy2166 283 KWGQAEISVNL 293 (805)
Q Consensus 283 ~~g~~~~~~~l 293 (805)
..+.......+
T Consensus 206 ~~~~~~~~~~i 216 (219)
T 1c1e_H 206 PASSTKVDKKI 216 (219)
T ss_dssp GGGTEEEEEEC
T ss_pred CCCCccEEEec
Confidence 88776555443
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.1e-17 Score=162.93 Aligned_cols=134 Identities=13% Similarity=0.097 Sum_probs=88.8
Q ss_pred EEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCC
Q psy2166 627 VILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 706 (805)
Q Consensus 627 ~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~ 706 (805)
..|.|.+++.+|+|.|+|.|.|..+.....+.|.|.. +|.+...+.. .+..
T Consensus 82 ~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~---------------------------~P~v~~~~~~--~~~~ 132 (248)
T 3pv7_A 82 ASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVA---------------------------SPASRLLLDQ--VGMK 132 (248)
T ss_dssp CCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEB---------------------------CCEEEEECC-------
T ss_pred EEEEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEec---------------------------CCceEEecCC--cccc
Confidence 3499999999999999999999999888888999984 5555555443 3567
Q ss_pred CCeEEEEEEEeecC-CCCe-EEEEEECCEEccCCCC-------eEE-EeeCc----EEEEEEcCCCCCCCEEEEEEEEcC
Q psy2166 707 GEIAHFEASLIPVG-DQTM-TVEFLYNGKPIEASHR-------IRT-VHAFG----MVVLEILGTKIEDTGVYTCRATNK 772 (805)
Q Consensus 707 G~~~~l~C~~~~~g-~p~~-~v~W~~~g~~l~~~~~-------~~~-~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~ 772 (805)
|+.+.|.|.+. | .|.| .|+|+|+|+.+..... ... ....+ ...|.|..+..+|+|.|+|.|.|.
T Consensus 133 ~~~~~L~C~~~--g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~ 210 (248)
T 3pv7_A 133 ENEDKYMCESS--GFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHA 210 (248)
T ss_dssp ---CEEEEEEE--EEBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECT
T ss_pred CCCcEEEEEEc--cEECCCeEEEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECC
Confidence 88889999998 6 7888 9999999965432210 011 11111 246999999999999999999999
Q ss_pred CccEEEEEEEEEEEeCCCc
Q psy2166 773 WGQAEISVNLECVVWSPSQ 791 (805)
Q Consensus 773 ~G~~~~~~~l~V~~~~~~~ 791 (805)
.|....+..+.+.+..|+.
T Consensus 211 ~~~~~~~~~v~l~V~~p~~ 229 (248)
T 3pv7_A 211 SLHTPLRSNFTLTAARHSL 229 (248)
T ss_dssp TCSSCEEEEECC-------
T ss_pred CCCCCcEEEEEEEEcCCCC
Confidence 9975554444444454443
|
| >1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-17 Score=165.89 Aligned_cols=195 Identities=16% Similarity=0.175 Sum_probs=126.8
Q ss_pred cccCCCeEEEEEEEeeCCCCCcEEEEEECC--EEcc-----------------CCCceEEEee--CCEEEEEEccCCCCC
Q psy2166 507 QLKEGQSAHFEARLTPVTDPDLVVEWFYNG--KKLP-----------------HGHRYRTFHD--FGIVILDILYCYEEN 565 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g--~~l~-----------------~~~~~~~~~~--~~~~~L~i~~v~~~d 565 (805)
.+.+|++++|.|.+.+...+.+.+.|+|++ ..+. ...|+.+..+ ++...|.|.+++.+|
T Consensus 37 ~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D 116 (282)
T 1qok_A 37 LVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLTSED 116 (282)
T ss_dssp EEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred EEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCChhh
Confidence 489999999999998321136799999853 1110 1246666543 356789999999999
Q ss_pred CEEEEEEEEcCCcce---E--EEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcE
Q psy2166 566 SGVYECRATNKYGSD---V--TKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSG 640 (805)
Q Consensus 566 ~G~Y~C~a~n~~g~~---~--~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G 640 (805)
+|.|.|.+.|..|.. . ..+.|.|...+.. .| .+
T Consensus 117 sG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~-----~~-------------------------------------~~ 154 (282)
T 1qok_A 117 TAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGG-----SG-------------------------------------GG 154 (282)
T ss_dssp CEEEEEEEECSSSSCCCEEECCCEEEEEEC--------------------------------------------------
T ss_pred CEEEEEEeccCCCccceeeeCCCEEEEEecCCcc-----cC-------------------------------------Cc
Confidence 999999999987621 0 1123333222110 00 00
Q ss_pred EEEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecC
Q psy2166 641 VYECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG 720 (805)
Q Consensus 641 ~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g 720 (805)
.. . - ...+|.+...+.+. .+.+|++++|.|.+. +
T Consensus 155 ~~-----------~------~--------------------------~~~~~~~~~~p~~~-~v~~G~~v~L~C~~~--~ 188 (282)
T 1qok_A 155 GS-----------G------G--------------------------GGSENVLTQSPAIM-SASPGEKVTITCSAS--S 188 (282)
T ss_dssp --------------------------------------------------CCCEEEECSEE-EECTTCCEEEEEEES--S
T ss_pred cC-----------C------C--------------------------CccceEEecCCCEE-EEcCCCcEEEEEEec--C
Confidence 00 0 0 00244555555566 899999999999998 8
Q ss_pred CCCeEEEEEE--CCEEcc------------CCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCc-cEEEEEEEEEE
Q psy2166 721 DQTMTVEFLY--NGKPIE------------ASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWG-QAEISVNLECV 785 (805)
Q Consensus 721 ~p~~~v~W~~--~g~~l~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G-~~~~~~~l~V~ 785 (805)
.| +.|.|+| +|+.+. ...++.+..+.....|+|.+++.+|+|.|+|.|.|..+ .-...+.|+|.
T Consensus 189 ~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~ 267 (282)
T 1qok_A 189 SV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELK 267 (282)
T ss_dssp CC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred CC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEe
Confidence 88 8999999 665441 24567666666778999999999999999999998654 23345678886
Q ss_pred EeCCC
Q psy2166 786 VWSPS 790 (805)
Q Consensus 786 ~~~~~ 790 (805)
...+.
T Consensus 268 ~~~~~ 272 (282)
T 1qok_A 268 RAAAE 272 (282)
T ss_dssp -----
T ss_pred ccccc
Confidence 54433
|
| >4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=9.6e-18 Score=164.60 Aligned_cols=129 Identities=13% Similarity=0.112 Sum_probs=93.4
Q ss_pred EEEeccCCCCCcEEEEEEEEeCCcceEEEE-EEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCC
Q psy2166 628 ILDILYCYEENSGVYECRATNKYGSDVTKA-SLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 706 (805)
Q Consensus 628 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~-~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~ 706 (805)
.|.|.+++.+|+|.|+|.|.|..|...... .+.+. .+|.+...+... ....
T Consensus 84 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~-~~~~ 135 (225)
T 4fmk_A 84 TLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVI---------------------------AQPENHAEAQEV-TIGP 135 (225)
T ss_dssp CEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEE---------------------------BCCEEEEEECCB-CCSS
T ss_pred EEEEccCCHHHCcceEEEEEeCCCcceeeeeeeeee---------------------------cCCceeecccce-eecc
Confidence 499999999999999999999877665544 34443 345555555555 6777
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCc---EEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEE
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG---MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 783 (805)
++.+.+.|.+. .+.|++.+.|++++..+..........++. ...|.|.+++.+|+|.|+|.|.|.+|....++.++
T Consensus 136 ~~~~~~~c~~~-~~~P~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~ 214 (225)
T 4fmk_A 136 QSVAVARCVST-GGRPPARITWISSLGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVT 214 (225)
T ss_dssp SCEEEEEEEEE-EEBSCCEEEEECSSCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEE
T ss_pred eeeeeeeeeec-CCCCCCEEEEEECCccccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEE
Confidence 88888888876 378999999999886554332222122222 24699999999999999999999999776655555
Q ss_pred EE
Q psy2166 784 CV 785 (805)
Q Consensus 784 V~ 785 (805)
|.
T Consensus 215 l~ 216 (225)
T 4fmk_A 215 LS 216 (225)
T ss_dssp CC
T ss_pred EE
Confidence 43
|
| >3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-17 Score=166.88 Aligned_cols=173 Identities=16% Similarity=0.162 Sum_probs=120.8
Q ss_pred CCCceecCCCcEEEEEEEecCCCC-----CceEEEEECC--Eec------------CCCCceEEEecCcEEEEEEccccc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDP-----NLKIEWIFNG--KPL------------ELGSRFKTTADFGFVTLDLTEVYD 133 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p-----~~~v~W~k~g--~~i------------~~~~~~~~~~~~~~~~L~I~~~~~ 133 (805)
+..+.+.+|++++|.|.+. +.+ .+.|.|+|++ ..+ ....|+.+...++..+|.|.+++.
T Consensus 41 p~~~~v~~G~~v~L~C~~~--~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 118 (252)
T 3bkj_L 41 PLSLPVNLGEQASISCRSS--QSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEA 118 (252)
T ss_dssp CSEEEECTTSCEEEEEEES--SCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred CceEEEeCCCcEEEEEEcC--CCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCc
Confidence 3467899999999999998 455 5899999964 111 123578877777788999999999
Q ss_pred CCCeEEEEEEEeCCeeEE-EEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccc
Q psy2166 134 RDQGIYTCRAWNLAGETF-TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHL 212 (805)
Q Consensus 134 ~D~G~Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 212 (805)
+|+|.|+|.+.|..+... ....|.|.... .+|.+.......
T Consensus 119 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~--------------------------------------~~P~v~~~~~~~ 160 (252)
T 3bkj_L 119 EDLGVYYCFQASLVPLTFGAGTKLELKRAD--------------------------------------AAPTVSIFPPSS 160 (252)
T ss_dssp GGCEEEEEEECSBSSCEECCCEEEEECCCC--------------------------------------BCCEEEEECCCH
T ss_pred ccCEEEEEEEEcCCccEECCCEEEEEeCCC--------------------------------------cCcEEEEeCCCh
Confidence 999999999988754322 22456664311 245555433332
Q ss_pred cccCCCceEEEEEEEeeCCCCC-eEEEEEECCEEccCCCcEEE-E--EEcC----eEEEEEcCCCCcccEEEEEEEEcCC
Q psy2166 213 SNLSEGEIAHFEASLIPVGDQT-MTVEFLYNGKPIEASHRIRT-V--HAFG----MVVLEILGTKIEDTGVYTCRATNKW 284 (805)
Q Consensus 213 ~~v~~g~~~~l~C~~~~~~~p~-~~i~W~k~g~~l~~~~~~~~-~--~~~~----~~~L~i~~~~~~d~G~Y~C~~~n~~ 284 (805)
. +.+|+.++|.|.+.. ..|. ++|.|+|+|..+........ . ..++ .+.|.|.++..+|+|.|+|.|.|..
T Consensus 161 ~-~~~g~~v~L~C~~~g-~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~ 238 (252)
T 3bkj_L 161 E-QLTSGGASVVCFLNN-FYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKT 238 (252)
T ss_dssp H-HHHHTEEEEEEEEEE-EBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTT
T ss_pred h-hcCCCcEEEEEEEee-EeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCC
Confidence 2 347899999999853 2444 48999999998865411110 0 1111 2469999999999999999999976
Q ss_pred eeE
Q psy2166 285 GQA 287 (805)
Q Consensus 285 g~~ 287 (805)
...
T Consensus 239 ~~~ 241 (252)
T 3bkj_L 239 STS 241 (252)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
|
| >1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A | Back alignment and structure |
|---|
Probab=99.73 E-value=6.4e-17 Score=155.56 Aligned_cols=171 Identities=10% Similarity=0.076 Sum_probs=117.4
Q ss_pred CCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEE-EcCeEEEEEcCCCCcccEEEEEE
Q psy2166 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH-AFGMVVLEILGTKIEDTGVYTCR 279 (805)
Q Consensus 201 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~ 279 (805)
.+|.|...+. ..+.+|++++|.|.+ . .+.+.+.|+|+|..+.......... ......|.|.+++.+|+|.|+|.
T Consensus 7 ~~P~i~~~p~--~~v~~G~~v~L~C~~--~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~ 81 (201)
T 1nkr_A 7 RKPSLLAHPG--PLVKSEETVILQCWS--D-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCY 81 (201)
T ss_dssp CCCEEEEESC--SEEETTCCEEEEEEE--S-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEE
T ss_pred CCCeEEEEcC--CccCCCCcEEEEEec--c-CCCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEe
Confidence 4577776665 347899999999998 3 3667999999997654221110001 12346899999999999999999
Q ss_pred EEcCCe-----eEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceE
Q psy2166 280 ATNKWG-----QAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVK 354 (805)
Q Consensus 280 ~~n~~g-----~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~ 354 (805)
+.+... ..+..+.|.|.... .+|.+...+.. .+.+|+.++|.|.+. + +.+.+.|+|+|..+.......
T Consensus 82 a~~~~~~~~~~~~s~~~~l~V~~~~--~~p~i~~~p~~--~v~~G~~v~L~C~~~--~-~~~~~~w~k~g~~~~~~~~~~ 154 (201)
T 1nkr_A 82 GSVTHSPYQVSAPSDPLDIVIIGLY--EKPSLSAQPGP--TVLAGENVTLSCSSR--S-SYDMYHLSREGEAHERRLPAG 154 (201)
T ss_dssp EEBTTBTTCCCCCCCCEEEEEECSS--CCCEEEEESCS--EECTTCEEEEEEEES--S-CCSEEEEEETTCSSCEEEECE
T ss_pred EecCCCCccccCCCCCEEEEeeccC--CCCceecCCCC--ccCCCCeEEEEEeCC--C-CCceEEEEECCcccCcccccc
Confidence 986431 22344566665432 45666655542 388999999999985 3 567899999998775322111
Q ss_pred EEEeC-cEEEEEEcccCcCCceEEEEEEEeCc
Q psy2166 355 MVSDF-GFVVMDIAYVQSHDSGEYVCRAWNKY 385 (805)
Q Consensus 355 ~~~~~-~~~~l~i~~v~~~d~G~Y~C~a~n~~ 385 (805)
....+ ....|.|.+++ |+|.|+|.|.+..
T Consensus 155 ~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~ 184 (201)
T 1nkr_A 155 PKVNGTFQADFPLGPAT--HGGTYRCFGSFHD 184 (201)
T ss_dssp EEETTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred cccCCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence 11111 14579999998 9999999998764
|
| >3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D | Back alignment and structure |
|---|
Probab=99.73 E-value=5.5e-17 Score=162.76 Aligned_cols=194 Identities=16% Similarity=0.130 Sum_probs=126.3
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEEC--CEe---c--------------CCCCceEEEec--CcEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKP---L--------------ELGSRFKTTAD--FGFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~---i--------------~~~~~~~~~~~--~~~~~L~I~~~~~ 133 (805)
.+.+.+|++|+|.|.+.+...+.+.|.|+|. +.. + ....|+.+..+ .+..+|.|.+++.
T Consensus 11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 90 (256)
T 3umt_A 11 LELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTS 90 (256)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred ceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCc
Confidence 5679999999999999832222679999983 211 1 12357777654 3577899999999
Q ss_pred CCCeEEEEEEEeC----CeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccc
Q psy2166 134 RDQGIYTCRAWNL----AGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEF 209 (805)
Q Consensus 134 ~D~G~Y~C~a~n~----~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 209 (805)
+|+|.|.|.+.+. .+.....+.|.|...+....... .......+|.+...+
T Consensus 91 ~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~p 145 (256)
T 3umt_A 91 EDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGG-------------------------SGGGGSTDIQLTQSP 145 (256)
T ss_dssp GGCEEEEEEECCSTTCCSCEECCCEEEEECC----------------------------------------CCCCEEEEC
T ss_pred ccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcc-------------------------cCCCCccccEEEcCC
Confidence 9999999999987 33333455677654211000000 000000245555555
Q ss_pred ccccccCCCceEEEEEEEeeCCCCCeEEEEEEC--CEEcc------------CCCcEEEEEEcCeEEEEEcCCCCcccEE
Q psy2166 210 QHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN--GKPIE------------ASHRIRTVHAFGMVVLEILGTKIEDTGV 275 (805)
Q Consensus 210 ~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~--g~~l~------------~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 275 (805)
... .+.+|++++|.|.+ .+.+.+.+.|||+ +..+. ...++..........|.|.+++.+|+|.
T Consensus 146 ~~~-~v~~G~~v~L~C~~--~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 222 (256)
T 3umt_A 146 SSL-SASLGERVSITCRA--SQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVD 222 (256)
T ss_dssp SEE-EECTTCCEEEEEEE--SSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSE
T ss_pred CeE-EEECCCCEEEEEEE--ecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEE
Confidence 444 48899999999998 5677779999984 22211 1245555555667889999999999999
Q ss_pred EEEEEEcCCeeE-EEEEEEEEe
Q psy2166 276 YTCRATNKWGQA-EISVNLECV 296 (805)
Q Consensus 276 Y~C~~~n~~g~~-~~~~~l~v~ 296 (805)
|+|.+.+..... .....|.|.
T Consensus 223 Y~C~~~~~~~~~fg~gt~L~V~ 244 (256)
T 3umt_A 223 YYCLQYASSPPTFGGGTKLEIK 244 (256)
T ss_dssp EEEEECSSSSCEECCCEEEEEC
T ss_pred EEEEEeeCCCcEECCCEEEEEE
Confidence 999999864332 233555554
|
| >1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.6e-17 Score=164.56 Aligned_cols=194 Identities=17% Similarity=0.197 Sum_probs=126.2
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEECC--Eec-----------------CCCCceEEEec--CcEEEEEEccc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG--KPL-----------------ELGSRFKTTAD--FGFVTLDLTEV 131 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g--~~i-----------------~~~~~~~~~~~--~~~~~L~I~~~ 131 (805)
+..+.+.+|++|+|.|.+.+...+.+.|.|+|++ ..+ ....|+.+..+ ++..+|.|.++
T Consensus 33 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 112 (282)
T 1qok_A 33 SGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSL 112 (282)
T ss_dssp CCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred CCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcC
Confidence 3367899999999999998321136789999953 111 01357777653 45679999999
Q ss_pred ccCCCeEEEEEEEeCCe---eE--EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCcee
Q psy2166 132 YDRDQGIYTCRAWNLAG---ET--FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFT 206 (805)
Q Consensus 132 ~~~D~G~Y~C~a~n~~g---~~--~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 206 (805)
+.+|+|.|+|.+.|..| .. ...+.|.|...+... |.. .......++.+.
T Consensus 113 ~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~-----~~~---------------------~~~~~~~~~~~~ 166 (282)
T 1qok_A 113 TSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGS-----GGG---------------------GSGGGGSENVLT 166 (282)
T ss_dssp CGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC-----------------------------------------CCCEE
T ss_pred ChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCccc-----CCc---------------------cCCCCccceEEe
Confidence 99999999999999865 11 123467776532100 000 000001234444
Q ss_pred cccccccccCCCceEEEEEEEeeCCCCCeEEEEEE--CCEEcc------------CCCcEEEEEEcCeEEEEEcCCCCcc
Q psy2166 207 SEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY--NGKPIE------------ASHRIRTVHAFGMVVLEILGTKIED 272 (805)
Q Consensus 207 ~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k--~g~~l~------------~~~~~~~~~~~~~~~L~i~~~~~~d 272 (805)
..+... .+.+|++++|.|.+ .+.+ +.+.||| +|..+. ...++..........|.|.+++.+|
T Consensus 167 ~~p~~~-~v~~G~~v~L~C~~--~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 242 (282)
T 1qok_A 167 QSPAIM-SASPGEKVTITCSA--SSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAED 242 (282)
T ss_dssp EECSEE-EECTTCCEEEEEEE--SSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred cCCCEE-EEcCCCcEEEEEEe--cCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhH
Confidence 444443 47899999999998 6677 7999999 665441 1345555445567789999999999
Q ss_pred cEEEEEEEEcCCeeE-EEEEEEEEe
Q psy2166 273 TGVYTCRATNKWGQA-EISVNLECV 296 (805)
Q Consensus 273 ~G~Y~C~~~n~~g~~-~~~~~l~v~ 296 (805)
+|.|+|.+.+..... .....|.|.
T Consensus 243 sG~Y~C~a~~~~~~~fg~gt~l~V~ 267 (282)
T 1qok_A 243 AATYYCQQRSSYPLTFGAGTKLELK 267 (282)
T ss_dssp CEEEEEEECSSSSCEECCCEEEEEC
T ss_pred CEEEEEEEeeCCCceEeCCEEEEEe
Confidence 999999998754322 233445543
|
| >3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=5.3e-17 Score=162.31 Aligned_cols=144 Identities=14% Similarity=0.085 Sum_probs=91.9
Q ss_pred ceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceE-EEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeee
Q psy2166 617 RYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDV-TKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFT 695 (805)
Q Consensus 617 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~ 695 (805)
++.+...++...|.|.+++.+|+|.|.|.|.|..+... ....|.|...+...+..... .. ......+|.+.
T Consensus 64 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~-------~~-~~~~~~~~~~~ 135 (250)
T 3esu_F 64 RFSGSGSGTDYSLTISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSG-------GG-GSGGGGSEVQL 135 (250)
T ss_dssp TEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC--------------------------------C
T ss_pred CEEEeCCCCEEEEEEccCChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccc-------cc-cccCcccceEE
Confidence 34444445666799999999999999999999866533 33467776432110000000 00 00000233444
Q ss_pred ecCCcccccCCCCeEEEEEEEeecCCC--CeEEEEEEC--CEEcc-----------------CCCCeEEEee--CcEEEE
Q psy2166 696 SEFQHLSNLSEGEIAHFEASLIPVGDQ--TMTVEFLYN--GKPIE-----------------ASHRIRTVHA--FGMVVL 752 (805)
Q Consensus 696 ~~~~~~~~v~~G~~~~l~C~~~~~g~p--~~~v~W~~~--g~~l~-----------------~~~~~~~~~~--~~~~~L 752 (805)
..+... .+.+|++++|.|.+. |.| .+.|.|+|+ |..+. ...|+.+..+ ....+|
T Consensus 136 ~~~~~~-~v~~G~~v~L~C~~~--~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 212 (250)
T 3esu_F 136 QQSGPE-LVKPGASVKISCKDS--GYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYM 212 (250)
T ss_dssp EECCCE-EECTTCCEEEEEECC--STTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEE
T ss_pred ecCCce-EEcCCceEEEEEEec--CCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEE
Confidence 455556 799999999999998 766 789999997 43321 1256666544 456789
Q ss_pred EEcCCCCCCCEEEEEEEEc
Q psy2166 753 EILGTKIEDTGVYTCRATN 771 (805)
Q Consensus 753 ~i~~v~~~d~G~Y~C~a~N 771 (805)
.|.+++.+|+|.|.|.|.|
T Consensus 213 ~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 213 QLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp EECSCCGGGCEEEEEEEEC
T ss_pred EECCCCcccCEEEEEEEec
Confidence 9999999999999999998
|
| >1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=8.8e-17 Score=154.71 Aligned_cols=153 Identities=14% Similarity=0.150 Sum_probs=105.2
Q ss_pred CCCeEEEEECCEEcc------------CCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceE-----EEEEEEE
Q psy2166 599 QLPEVEWFYNGKKLP------------HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDV-----TKASLKC 661 (805)
Q Consensus 599 ~~p~v~W~~~g~~l~------------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~-----~~~~l~V 661 (805)
+.+.+.|++++..+. ...+..+.. .+...|.|.+++.+|+|.|+|.|.|..|... ..+.|.|
T Consensus 26 ~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~-~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V 104 (201)
T 1dr9_A 26 AQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDI-TNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSV 104 (201)
T ss_dssp HHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEES-TTTTEEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEE
T ss_pred cccEEEEEeCCcEEEEEeCCceeecCcccceeEEcc-CCCcEEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEE
Confidence 346899999998762 012232211 1234599999999999999999999877553 4667777
Q ss_pred eeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCe
Q psy2166 662 VSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI 741 (805)
Q Consensus 662 ~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~ 741 (805)
..++ .+|.+... ....|+.++|.|.+. .|.|.|.|+|+|||+.+......
T Consensus 105 ~~~~------------------------~~p~~~~~-----~~~~g~~~~l~C~~~-~g~P~p~i~W~k~g~~l~~~~~~ 154 (201)
T 1dr9_A 105 KADF------------------------PTPSISDF-----EIPTSNIRRIICSTS-GGFPEPHLSWLENGEELNAINTT 154 (201)
T ss_dssp ECCC------------------------CCCEEEEE-----ECSSTTEEEEEEEEE-EESSCEEEEEEESSCEECCSEEE
T ss_pred cCCC------------------------CCCceEec-----cCCCCCeEEEEEecC-CccCCCEEEEEECCEECccccce
Confidence 6432 23555432 224599999999993 28899999999999988765333
Q ss_pred EEEeeC-cE-EEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEE
Q psy2166 742 RTVHAF-GM-VVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782 (805)
Q Consensus 742 ~~~~~~-~~-~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 782 (805)
...... +. ....+..+..+|+|.|+|.|.|..|..+..+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~ 197 (201)
T 1dr9_A 155 VSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW 197 (201)
T ss_dssp EEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred EEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence 222222 32 222334556789999999999999988776554
|
| >1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-17 Score=161.55 Aligned_cols=183 Identities=11% Similarity=0.090 Sum_probs=126.6
Q ss_pred CCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEE
Q psy2166 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 280 (805)
Q Consensus 201 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 280 (805)
.+|.|...+.. .+.+|++++|.|.+ .+ +...+.|||+|..+...... .........|.|.+++.+|+|.|+|.+
T Consensus 6 ~kP~i~~~P~~--~v~~G~~VtL~C~~--~~-~~~~~~w~k~g~~~~~~~~~-~~~~~~~~~L~I~~v~~~DsG~Y~C~~ 79 (242)
T 1p6f_A 6 PKPFIWAEPHF--MVPKEKQVTICCQG--NY-GAVEYQLHFEGSLFAVDRPK-PPERINKVKFYIPDMNSRMAGQYSCIY 79 (242)
T ss_dssp CCCEEEEESCS--EEETTCCEEEEEEC--CT-TCCEEEEEETTEEEEEECCS-SCTTCCEEEEEECSCCGGGCEEEEEEE
T ss_pred CCCEEEeeCCC--ccCCCCcEEEEEee--CC-CCcEEEEEECCCcccccccc-ccCCcceeEEEecCCCcccCeEEEEEE
Confidence 45778777765 48899999999987 33 45789999999876421000 001123467999999999999999999
Q ss_pred EcCCeeE--EEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceEEEEe
Q psy2166 281 TNKWGQA--EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD 358 (805)
Q Consensus 281 ~n~~g~~--~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~ 358 (805)
.+..+.. +..+.|.|.... .+|.+...+. . .+.+|+.++|.|.+. + +.+.+.|+|+|..+.. .....
T Consensus 80 ~~~~~~s~~S~~~~L~V~~~~--~~P~i~~~p~-~-~v~~G~~vtL~C~~~--~-~~~~~~w~k~g~~~~~----~~~~~ 148 (242)
T 1p6f_A 80 RVGELWSEPSNLLDLVVTEMY--DTPTLSVHPG-P-EVISGEKVTFYCRLD--T-ATSMFLLLKEGRSSHV----QRGYG 148 (242)
T ss_dssp EETTEECCCCCCEEEEEECCS--CCCEEEEESC-S-EEETTCEEEEEEECT--T-SCSEEEEEECSSSCEE----EEEEC
T ss_pred ecCCccccCCcceEEEeeccc--CCCceEccCC-C-ccCCCCcEEEEEecC--C-CCCEEEEEECCCccCc----cccCC
Confidence 8865433 344566665321 3566665443 2 378999999999985 3 3569999999976643 11223
Q ss_pred CcEEEEEEcccCcCCceEEEEEEEeCc-e--eeEEEEEEEEEecc
Q psy2166 359 FGFVVMDIAYVQSHDSGEYVCRAWNKY-G--EDFTRATIKCFGKG 400 (805)
Q Consensus 359 ~~~~~l~i~~v~~~d~G~Y~C~a~n~~-g--~~~~~~~l~V~~~~ 400 (805)
.....|.|.+++.+|+|.|+|.+.|.. . .....+.|.|.+.+
T Consensus 149 ~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~ 193 (242)
T 1p6f_A 149 KVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDI 193 (242)
T ss_dssp SSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC--
T ss_pred CceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEeccC
Confidence 345679999999999999999999864 1 23344677777543
|
| >2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=7e-17 Score=153.92 Aligned_cols=139 Identities=19% Similarity=0.256 Sum_probs=100.3
Q ss_pred CCCeEEEEECCEEcc---CC---------------CceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEE
Q psy2166 599 QLPEVEWFYNGKKLP---HG---------------HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660 (805)
Q Consensus 599 ~~p~v~W~~~g~~l~---~~---------------~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 660 (805)
+.+.+.|+++|..+. .+ .|+.+.. ...|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus 27 ~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~---~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~ 103 (193)
T 2if7_A 27 KVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQ---SYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLR 103 (193)
T ss_dssp CCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECT---TCCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred cccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECC---CeEEEECCCCcccCceEEEEEEecCCCeEEEEEEE
Confidence 346899999987552 11 1333332 23499999999999999999999998877788899
Q ss_pred EeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCC-eEEEEEEEeecC-CCCeEEEEEECCEEccCC
Q psy2166 661 CVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGE-IAHFEASLIPVG-DQTMTVEFLYNGKPIEAS 738 (805)
Q Consensus 661 V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~-~~~l~C~~~~~g-~p~~~v~W~~~g~~l~~~ 738 (805)
|.+++ ..|.+..... .+..|. .++|.|.+. | .|.|.|+|+|+|+.+...
T Consensus 104 V~~~~------------------------~~p~i~~~~~---~~~~g~~~v~L~C~~~--g~~p~p~i~W~~~g~~l~~~ 154 (193)
T 2if7_A 104 ILRQL------------------------RNIQVTNHSQ---LFQNMTCELHLTCSVE--DADDNVSFRWEALGNTLSSQ 154 (193)
T ss_dssp EECCC------------------------EEEEEEECCC------CSSEEEEEEEEEE--SCCTTCEEEEEETTEEEESS
T ss_pred EEccC------------------------CCCeEecCce---eecCCCceEEEEEEEe--cCCCceEEEEEeCCEEcCCC
Confidence 87532 2355554432 234565 899999999 7 468999999999876432
Q ss_pred CCeEEEeeCcEEEEEEcCCCCC-CCEEEEEEEEcCCccEEEEE
Q psy2166 739 HRIRTVHAFGMVVLEILGTKIE-DTGVYTCRATNKWGQAEISV 780 (805)
Q Consensus 739 ~~~~~~~~~~~~~L~i~~v~~~-d~G~Y~C~a~N~~G~~~~~~ 780 (805)
+ .|.|.....+ |+|.|+|.|.|.+|..+..+
T Consensus 155 ---------~--~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~ 186 (193)
T 2if7_A 155 ---------P--NLTVSWDPRISSEQDYTCIAENAVSNLSFSV 186 (193)
T ss_dssp ---------S--EEEEEECTTTCSCCEEEEEEEETTEEEEEEE
T ss_pred ---------C--eEEEEeccCcCCCCcEEEEEECCCCcccccc
Confidence 2 3666544554 99999999999999886554
|
| >1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ... | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-17 Score=162.39 Aligned_cols=179 Identities=13% Similarity=0.142 Sum_probs=116.0
Q ss_pred cccCCCeEEEEEEEeeCCCC--CcEEEEEECC--EE---c----------------cCCCceEEEee--CCEEEEEEccC
Q psy2166 507 QLKEGQSAHFEARLTPVTDP--DLVVEWFYNG--KK---L----------------PHGHRYRTFHD--FGIVILDILYC 561 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~p--~~~v~W~~~g--~~---l----------------~~~~~~~~~~~--~~~~~L~i~~v 561 (805)
.+.+|++++|.|.+. +.| .+.+.|+|++ .. + ....|+.+..+ .+...|.|.++
T Consensus 11 ~v~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 88 (222)
T 1q9r_B 11 LVQSGGSLRLSCATS--GFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL 88 (222)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred eEcCCCEEEEEEEec--CccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcC
Confidence 388999999999998 444 6789999842 21 1 01246665543 34667999999
Q ss_pred CCCCCEEEEEEEEcCCcceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEE
Q psy2166 562 YEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 641 (805)
Q Consensus 562 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 641 (805)
+.+|+|.|.|.+.|..|... . .. .+
T Consensus 89 ~~~D~G~Y~C~~~~~~~~~~-----------~---------~~---------~~-------------------------- 113 (222)
T 1q9r_B 89 RAEDSATYYCARDHDGYYER-----------F---------SY---------WG-------------------------- 113 (222)
T ss_dssp CGGGCEEEEEEECCCSSCCS-----------C---------CC---------BC--------------------------
T ss_pred CcccCeEEEEEEeccCCccc-----------c---------eE---------eC--------------------------
Confidence 99999999999977543100 0 00 00
Q ss_pred EEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCC
Q psy2166 642 YECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGD 721 (805)
Q Consensus 642 Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~ 721 (805)
....|.|...+ ..+|.+...+... .+.+|+.++|.|.+. |.
T Consensus 114 -------------~~~~l~V~~~~-----------------------~~~P~i~~~~~~~-~~~~g~~v~L~C~~~--g~ 154 (222)
T 1q9r_B 114 -------------QGTLVTVSAAK-----------------------TTPPSVYPLAPGS-AAQTNSMVTLGCLVK--GY 154 (222)
T ss_dssp -------------CCEEEEECSSC-----------------------CBCCEEEEECCCS-CCCCSSEEEEEEEEE--EE
T ss_pred -------------CceEEEeccCC-----------------------CCCCeEEEccccc-cccCCCcEEEEEEEc--cE
Confidence 00112221100 0245554433333 567899999999998 64
Q ss_pred -CCe-EEEEEECCEEccCCCCeEEEeeCc----EEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEE
Q psy2166 722 -QTM-TVEFLYNGKPIEASHRIRTVHAFG----MVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783 (805)
Q Consensus 722 -p~~-~v~W~~~g~~l~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~ 783 (805)
|.| .|+|+++|+.+... ........+ ...|.|.++..+| |.|+|.|.|.+|.......+.
T Consensus 155 ~P~p~~v~W~~~g~~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i~ 220 (222)
T 1q9r_B 155 FPEPVTVTWNSGSLSSGVH-TFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIV 220 (222)
T ss_dssp BSSCCEEEEGGGTBCTTEE-EEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEECC
T ss_pred ECCCCEEEEecCCeEcceE-eccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEecc
Confidence 888 99999999876432 111111222 2368999999999 999999999999877666554
|
| >3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.6e-17 Score=161.32 Aligned_cols=171 Identities=16% Similarity=0.177 Sum_probs=123.1
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEECC--EE------------ccCCCceEEEEeCcEEEEEEcccCcCCceEEEEEE
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFHNG--KP------------IFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRA 381 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~g--~~------------l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a 381 (805)
+.+|++++|.|.+. +.+.+.+.|+|++ .. .....++..........|.|.+++.+|+|.|+|.+
T Consensus 36 v~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 113 (237)
T 3sob_L 36 ASVGDRVTITCRAS--QDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQ 113 (237)
T ss_dssp EETTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred EeCCCcEEEEEecC--CCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeEEEEee
Confidence 88999999999997 6688899999832 11 11235677666667788999999999999999999
Q ss_pred EeCceeeE-EEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEE
Q psy2166 382 WNKYGEDF-TRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEAR 460 (805)
Q Consensus 382 ~n~~g~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (805)
.|..+... ....+.|..
T Consensus 114 ~~~~~~~~~~~~~l~V~~-------------------------------------------------------------- 131 (237)
T 3sob_L 114 SYTTPPTFGQGTKVEIKR-------------------------------------------------------------- 131 (237)
T ss_dssp CSSSSCEECCCEEEEEEC--------------------------------------------------------------
T ss_pred ccCCceEEcCcEEEEEec--------------------------------------------------------------
Confidence 88765322 234555532
Q ss_pred EeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCC-CcEEEEEECCEEc
Q psy2166 461 LTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDP-DLVVEWFYNGKKL 539 (805)
Q Consensus 461 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p-~~~v~W~~~g~~l 539 (805)
...+|.+....+... +.+|+.++|.|.+.+ +.| .+.|+|+|||..+
T Consensus 132 -------------------------------~~~~p~v~~~~~~~~-~~~g~~v~l~C~~~~-~~p~~~~v~W~k~g~~~ 178 (237)
T 3sob_L 132 -------------------------------TVAAPSVFIFPPSDE-QLKSGTASVVCLLNN-FYPREAKVQWKVDNALQ 178 (237)
T ss_dssp -------------------------------CCBCCEEEEECCCHH-HHHHTEEEEEEEEEE-EBSSCCEEEEEETTEEC
T ss_pred -------------------------------CCCCCceEEeCCChh-hccCCceEEEEEEcc-cCCCceEEEEEECCCCC
Confidence 135677766555544 556889999999996 245 6899999999998
Q ss_pred cCCC--ceEEE-eeCC----EEEEEEccCCCCCCEEEEEEEEcCCcceEEE
Q psy2166 540 PHGH--RYRTF-HDFG----IVILDILYCYEENSGVYECRATNKYGSDVTK 583 (805)
Q Consensus 540 ~~~~--~~~~~-~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~ 583 (805)
..+. ..... ..++ .+.|.|.....+|+|.|+|.|.|........
T Consensus 179 ~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~ 229 (237)
T 3sob_L 179 SGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVT 229 (237)
T ss_dssp CSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEE
T ss_pred CCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCcee
Confidence 7531 00001 1111 3468999999999999999999987655433
|
| >2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-17 Score=162.22 Aligned_cols=177 Identities=14% Similarity=0.144 Sum_probs=114.7
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEe---------------cCCCCceEEEe-cCcEEEEEEcccccC
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKP---------------LELGSRFKTTA-DFGFVTLDLTEVYDR 134 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~---------------i~~~~~~~~~~-~~~~~~L~I~~~~~~ 134 (805)
+..+.+.+|+.++|.|. . +.|.+.|.|+|+ +.. -....|+.+.. .....+|+|.+++.+
T Consensus 7 p~~~~v~~G~~v~L~C~-~--~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~ 83 (238)
T 2p1y_A 7 PRNKVAVTGGKVTLSCN-Q--TNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPS 83 (238)
T ss_dssp CSEEEEETTCCEEEEEE-E--CSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGG
T ss_pred ccceEEeCCCEEEEEee-c--CCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcc
Confidence 44678999999999999 5 578889999995 211 11235776664 334568999999999
Q ss_pred CCeEEEEEEEeCCeeE-----EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccc
Q psy2166 135 DQGIYTCRAWNLAGET-----FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEF 209 (805)
Q Consensus 135 D~G~Y~C~a~n~~g~~-----~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 209 (805)
|+|.|+|.|.|..|.. .....|.|...+.... +|. . ...+.+...+
T Consensus 84 DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~---p~~-------~-------------------~~~~~v~~~p 134 (238)
T 2p1y_A 84 QTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAK---KDA-------A-------------------KKDGQVRQSP 134 (238)
T ss_dssp GCEEEEEEEEC------CEEECCCEEEEEECCCHHHH---HHH-------H-------------------HHHTCCEEEC
T ss_pred cCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCc---CCc-------c-------------------cceeeEEccC
Confidence 9999999999875421 1234566643221000 000 0 0001333333
Q ss_pred ccccccCCCceEEEEEEEeeCCCCCeEEEEEECC--E---Ec---------cCCCcEEEEE--EcCeEEEEEcCCCCccc
Q psy2166 210 QHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG--K---PI---------EASHRIRTVH--AFGMVVLEILGTKIEDT 273 (805)
Q Consensus 210 ~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g--~---~l---------~~~~~~~~~~--~~~~~~L~i~~~~~~d~ 273 (805)
... .+.+|+.++|.|.+ .+.|.+.+.|+|++ . .+ ....++.... ......|.|.+++.+|+
T Consensus 135 ~~~-~v~~G~~v~L~C~~--~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~ 211 (238)
T 2p1y_A 135 QSL-TVWEGETAILNCSY--ENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDS 211 (238)
T ss_dssp SEE-EEETTSCEEEEEEC--CCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGC
T ss_pred ceE-EEeCCCeEEEEEEE--ecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHC
Confidence 333 47899999999988 67788999999964 1 11 1123443332 22357899999999999
Q ss_pred EEEEEEEEcCC
Q psy2166 274 GVYTCRATNKW 284 (805)
Q Consensus 274 G~Y~C~~~n~~ 284 (805)
|.|+|.|.|..
T Consensus 212 G~Y~C~a~n~~ 222 (238)
T 2p1y_A 212 ATYFCAAIDTN 222 (238)
T ss_dssp EEEEEEEEETT
T ss_pred EEEEEEEeeCC
Confidence 99999999973
|
| >1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A | Back alignment and structure |
|---|
Probab=99.73 E-value=7.5e-17 Score=151.02 Aligned_cols=137 Identities=15% Similarity=0.280 Sum_probs=104.8
Q ss_pred CCCeEEEEE--CCEEc----------cCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceE--EEEEEEEeec
Q psy2166 599 QLPEVEWFY--NGKKL----------PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDV--TKASLKCVSK 664 (805)
Q Consensus 599 ~~p~v~W~~--~g~~l----------~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~V~~~ 664 (805)
+.+.|.|+| ++..| ..+.++.+..++ .|.|.+++.+|+|.|+|.|.|..|... ..+.|.|.++
T Consensus 29 ~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ng---sL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~ 105 (182)
T 1hnf_A 29 DIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNG---TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQER 105 (182)
T ss_dssp SEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTS---CEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECC
T ss_pred cCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCC---CEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCc
Confidence 357999999 98877 356777777554 399999999999999999999988764 4667888753
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEE
Q psy2166 665 TNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTV 744 (805)
Q Consensus 665 p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~ 744 (805)
. .+|.|... +..++|.|.+. +.|.|.++|+++|..+ ..
T Consensus 106 ~------------------------~~P~i~~~---------~~~v~L~C~~~--~~p~~~~~W~~~g~~l-~~------ 143 (182)
T 1hnf_A 106 V------------------------SKPKISWT---------CINTTLTCEVM--NGTDPELNLYQDGKHL-KL------ 143 (182)
T ss_dssp C------------------------CCCEEEEE---------TTTTEEEEECS--SCSSCEEEEEESSCEE-EE------
T ss_pred C------------------------CCCEEEEc---------cCcEEEEeEcc--CCCCCEEEEEECCEEC-CC------
Confidence 1 35655432 23689999998 8899999999999887 21
Q ss_pred eeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 745 HAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 745 ~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
... .|.+.. ..+|+|.|+|+|.|.+|..+....+..
T Consensus 144 -~~~--~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~c 179 (182)
T 1hnf_A 144 -SQR--VITHKW-TTSLSAKFKCTAGNKVSKESSVEPVSC 179 (182)
T ss_dssp -ESS--CEEEEC-CSCEEEEEEEEEECSSCEEEEEEEEEE
T ss_pred -CCc--EEEEec-ccCCCcEEEEEEEeCCCCcEEcceecC
Confidence 112 233432 578999999999999999988877643
|
| >1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.7e-18 Score=161.79 Aligned_cols=149 Identities=16% Similarity=0.314 Sum_probs=107.7
Q ss_pred cCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcC-CCCcccEEEEEEEEcCCeeEEEEEEE
Q psy2166 215 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILG-TKIEDTGVYTCRATNKWGQAEISVNL 293 (805)
Q Consensus 215 v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~-~~~~d~G~Y~C~~~n~~g~~~~~~~l 293 (805)
..+|+.+.|.|.+ .+ +. .|.|+|+|..+..... ..|.|.+ ++.+|+|.|+|.|.|..|.....+.+
T Consensus 11 ~~~G~~v~L~C~~--~~-~~-~i~W~k~g~~l~~~~~---------~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~ 77 (186)
T 1jbj_A 11 SISGTSVELTCPL--DS-DE-NLKWEKNGQELPQKHD---------KHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKA 77 (186)
T ss_dssp EEETTEEEEECSS--CC-CT-TCEEEETTEEECSCCC---------SEEEEESCCTTTSCEEEEEECSSCCCCCCEEECC
T ss_pred EeCCcEEEEEEeC--CC-CC-ceEEEECCEECCCCCC---------CEEEECCCCccccCEEEEEEEEeCCCcEEEEEEE
Confidence 4589999999987 44 33 3999999999876421 2699999 99999999999999988875555555
Q ss_pred EEeccCCCC-------------CCeEEecCC------CcccccCCCeEEEEEEEeecCCCCcEEEEEECCEEccCCCceE
Q psy2166 294 ECVDKSKGQ-------------PPKFTSHIK------SLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVK 354 (805)
Q Consensus 294 ~v~~~~~~~-------------~p~~~~~~~------~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~g~~l~~~~~~~ 354 (805)
.|....... ++.+..... ....+.+|+.+.|.|.+ |.|.|.|+|+|..+.....
T Consensus 78 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~-----p~p~i~W~k~g~~i~~~~~-- 150 (186)
T 1jbj_A 78 RVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL-----TDKTIKWLKDGSIISPLNA-- 150 (186)
T ss_dssp CCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS-----SCSCEEEEETTEECCCSSC--
T ss_pred EEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC-----CCCeEEEEECCEECcccCC--
Confidence 543321110 000000000 00124589999999975 6789999999999874332
Q ss_pred EEEeCcEEEEEEcccCcCCceEEEEEEEeCceee
Q psy2166 355 MVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGED 388 (805)
Q Consensus 355 ~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~ 388 (805)
....|.|.++..+|+|.|+|.|.|..|..
T Consensus 151 -----~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 151 -----TKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp -----CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred -----CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 12258899999999999999999998876
|
| >3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ... | Back alignment and structure |
|---|
Probab=99.72 E-value=1.7e-17 Score=160.91 Aligned_cols=87 Identities=8% Similarity=0.041 Sum_probs=61.6
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCC-CCe-EEEEEECCEEccCCCCeEEEeeCc---EEEEEEcCCCCCCCEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGD-QTM-TVEFLYNGKPIEASHRIRTVHAFG---MVVLEILGTKIEDTGV 764 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~-p~~-~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~ 764 (805)
.+|.+...+... .+.+|+.++|.|.+. |. |.| .|+|+++|..+.......+..++. ...|.|.++..+| |.
T Consensus 117 ~~P~v~~~~~~~-~~~~g~~v~L~C~~~--g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~ 192 (210)
T 3d9a_H 117 TPPSVYPLAPGS-AAQTNSMVTLGCLVK--GYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ET 192 (210)
T ss_dssp BCCEEEEECCTT-SCCCSSEEEEEEEEE--EEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SC
T ss_pred CCCEEEEecCCc-ccccCCcEEEEEEEe--eEecCCcEEEEeeCCcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-Cc
Confidence 356666555445 678999999999998 65 888 999999998643211111112211 2469999998877 99
Q ss_pred EEEEEEcCCccEEEEE
Q psy2166 765 YTCRATNKWGQAEISV 780 (805)
Q Consensus 765 Y~C~a~N~~G~~~~~~ 780 (805)
|+|.|.|..|......
T Consensus 193 Y~C~a~n~~~~~~~~~ 208 (210)
T 3d9a_H 193 VTCNVAHPASSTKVDK 208 (210)
T ss_dssp CEEEEEEGGGTEEEEE
T ss_pred EEEEEEeCCCCccccc
Confidence 9999999999876543
|
| >1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A | Back alignment and structure |
|---|
Probab=99.72 E-value=8.7e-17 Score=160.37 Aligned_cols=180 Identities=16% Similarity=0.139 Sum_probs=117.3
Q ss_pred CCCceecCCCcEEEEEEEecCCCC-----CceEEEEECC--Ee---c---------CCCCceEEEecCcEEEEEEccccc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDP-----NLKIEWIFNG--KP---L---------ELGSRFKTTADFGFVTLDLTEVYD 133 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p-----~~~v~W~k~g--~~---i---------~~~~~~~~~~~~~~~~L~I~~~~~ 133 (805)
+..+.+.+|+.++|.|.+. +.+ .+.|.|+|+. .. + ....|+.+..+++..+|.|.+++.
T Consensus 8 p~~~~v~~G~~v~L~C~~~--~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 85 (247)
T 1svz_A 8 PLYLPVSLGDQASISCRSS--QTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEA 85 (247)
T ss_dssp CSEEEECTTCCEEEEEEES--SCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred CCeEEecCCCCEEEEEeCC--CcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCH
Confidence 4467899999999999998 455 6899999942 21 1 124688877777788999999999
Q ss_pred CCCeEEEEEEEeCCeeE-EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccc
Q psy2166 134 RDQGIYTCRAWNLAGET-FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHL 212 (805)
Q Consensus 134 ~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 212 (805)
+|+|.|.|.+.|..+.. ...+.|.|...+.... .+. ....++.....++..
T Consensus 86 ~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~---~~~-------------------------~~~~~~~~~~~~~~~ 137 (247)
T 1svz_A 86 EDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGG---GGS-------------------------GGGGSEVQLQQSGPE 137 (247)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEEC-------------------------------------------CCEEEECCCE
T ss_pred HHCEEEEEEEccCCccEECCCEEEEEECCccccc---ccc-------------------------ccccCceEEeCCCce
Confidence 99999999999875432 2235666654321000 000 000122222222233
Q ss_pred cccCCCceEEEEEEEeeCCCCCeEEEEEECC--EEc------c-----------CCCcEEEEE--EcCeEEEEEcCCCCc
Q psy2166 213 SNLSEGEIAHFEASLIPVGDQTMTVEFLYNG--KPI------E-----------ASHRIRTVH--AFGMVVLEILGTKIE 271 (805)
Q Consensus 213 ~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g--~~l------~-----------~~~~~~~~~--~~~~~~L~i~~~~~~ 271 (805)
.+.+|++++|.|.+.....+.+.+.|||++ ..+ . ...++.... ......|.|.+++.+
T Consensus 138 -~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~ 216 (247)
T 1svz_A 138 -LKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNE 216 (247)
T ss_dssp -EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGG
T ss_pred -eecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChh
Confidence 388999999999984221235799999963 211 0 123444433 234679999999999
Q ss_pred ccEEEEEEEEcC
Q psy2166 272 DTGVYTCRATNK 283 (805)
Q Consensus 272 d~G~Y~C~~~n~ 283 (805)
|+|.|+|.+.|.
T Consensus 217 DsG~Y~C~a~n~ 228 (247)
T 1svz_A 217 DTATYFCVRDRH 228 (247)
T ss_dssp GCEEEEEEEEEG
T ss_pred HCEEEEEEEecc
Confidence 999999999985
|
| >1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ... | Back alignment and structure |
|---|
Probab=99.72 E-value=3.7e-17 Score=160.16 Aligned_cols=178 Identities=12% Similarity=0.106 Sum_probs=120.8
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECC--Ee---c----------------CCCCceEEEec--CcEEEEEEccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG--KP---L----------------ELGSRFKTTAD--FGFVTLDLTEV 131 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g--~~---i----------------~~~~~~~~~~~--~~~~~L~I~~~ 131 (805)
.+.+.+|+.++|.|.+.+...+.+.|.|+|+. .. + ...+|+.+..+ .+..+|+|.++
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 88 (222)
T 1q9r_B 9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL 88 (222)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred ceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcC
Confidence 56899999999999998321126789999852 21 1 01357777654 35679999999
Q ss_pred ccCCCeEEEEEEEeCCe-----eEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCcee
Q psy2166 132 YDRDQGIYTCRAWNLAG-----ETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFT 206 (805)
Q Consensus 132 ~~~D~G~Y~C~a~n~~g-----~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 206 (805)
+.+|+|.|.|.+.+..+ .......|.|...+ ..+|.+.
T Consensus 89 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~-------------------------------------~~~P~i~ 131 (222)
T 1q9r_B 89 RAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAK-------------------------------------TTPPSVY 131 (222)
T ss_dssp CGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSC-------------------------------------CBCCEEE
T ss_pred CcccCeEEEEEEeccCCcccceEeCCceEEEeccCC-------------------------------------CCCCeEE
Confidence 99999999999998654 12233466665321 1335444
Q ss_pred cccccccccCCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCCCcEEEEEEcC----eEEEEEcCCCCcccEEEEEEEE
Q psy2166 207 SEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRIRTVHAFG----MVVLEILGTKIEDTGVYTCRAT 281 (805)
Q Consensus 207 ~~~~~~~~v~~g~~~~l~C~~~~~~~p~~-~i~W~k~g~~l~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~ 281 (805)
...... .+.+|+.++|.|.+.. ..|.+ .+.|+++|..+... .......++ .+.|.|.++..+| |.|+|.|.
T Consensus 132 ~~~~~~-~~~~g~~v~L~C~~~g-~~P~p~~v~W~~~g~~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~ 207 (222)
T 1q9r_B 132 PLAPGS-AAQTNSMVTLGCLVKG-YFPEPVTVTWNSGSLSSGVH-TFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVA 207 (222)
T ss_dssp EECCCS-CCCCSSEEEEEEEEEE-EBSSCCEEEEGGGTBCTTEE-EEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEE
T ss_pred Eccccc-cccCCCcEEEEEEEcc-EECCCCEEEEecCCeEcceE-eccccccCCcEEEEEEEEECchhcCC-CeEEEEEE
Confidence 433222 2568999999999842 24777 99999999876432 111111222 2468999999999 99999999
Q ss_pred cCCeeEEEEEEE
Q psy2166 282 NKWGQAEISVNL 293 (805)
Q Consensus 282 n~~g~~~~~~~l 293 (805)
|..+.......+
T Consensus 208 n~~~~~~~~~~i 219 (222)
T 1q9r_B 208 HPASSTKVDKKI 219 (222)
T ss_dssp EGGGTEEEEEEC
T ss_pred ccCCCCcEEEec
Confidence 998876554443
|
| >2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.72 E-value=8.4e-18 Score=166.32 Aligned_cols=179 Identities=14% Similarity=0.150 Sum_probs=120.0
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCc-eEEEEECC--Eec------------CCCCceEEEecCcEEEEEEcccccCCCe
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNL-KIEWIFNG--KPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQG 137 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~k~g--~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G 137 (805)
+..+.+.+|+.++|.|.+.+. .+.+ .|.|+|++ ..+ ....|+.+...++..+|.|.+++.+|+|
T Consensus 26 p~~~~v~~G~~v~L~C~~~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 104 (234)
T 2j6e_L 26 PPSASGTPGQRVTISCSGSSS-NIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEA 104 (234)
T ss_dssp CSCCCBCTTCEEEEEEECCTT-TTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCS
T ss_pred CCcEEeeCCCcEEEEEEecCC-CCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCE
Confidence 446789999999999999842 2333 79999963 222 1235787776677789999999999999
Q ss_pred EEEEEEEeCCee---EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccc
Q psy2166 138 IYTCRAWNLAGE---TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSN 214 (805)
Q Consensus 138 ~Y~C~a~n~~g~---~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 214 (805)
.|+|.+.|..+. ......|.|...+ ..+|.+........
T Consensus 105 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~~-------------------------------------~~~p~v~~~~~~~~- 146 (234)
T 2j6e_L 105 DYYCATWDDSLSAVIFGGGTKLTVLGQP-------------------------------------KAAPSVTLFPPSSE- 146 (234)
T ss_dssp EEEEEEEETTTTEEEECCCBCCCBCCCC-------------------------------------CCCCCCCEECCCHH-
T ss_pred EEEEEEEcCCcceeEecCCEEEEEecCC-------------------------------------CCCCcccccCCChh-
Confidence 999999998762 1112233332110 13455544333322
Q ss_pred cCCCceEEEEEEEeeCCCCC-eEEEEEECCEEccCCCcEEEE--EEc----CeEEEEEcCCCCcccEEEEEEEEcCCeeE
Q psy2166 215 LSEGEIAHFEASLIPVGDQT-MTVEFLYNGKPIEASHRIRTV--HAF----GMVVLEILGTKIEDTGVYTCRATNKWGQA 287 (805)
Q Consensus 215 v~~g~~~~l~C~~~~~~~p~-~~i~W~k~g~~l~~~~~~~~~--~~~----~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~ 287 (805)
+.+|+.++|.|.+.. ..|. +.+.|+|+|..+......... ..+ ..+.|.|.++..+|+|.|+|.|.|..+..
T Consensus 147 ~~~g~~v~L~C~~~g-~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~ 225 (234)
T 2j6e_L 147 ELQANKATLVCLISD-FFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTV 225 (234)
T ss_dssp HHTTSCCCEEECCCB-CSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCC
T ss_pred HhcCCceEEEEEEEE-EcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCce
Confidence 346889999998842 2343 599999999998654211000 111 13579999999999999999999987765
Q ss_pred EEEE
Q psy2166 288 EISV 291 (805)
Q Consensus 288 ~~~~ 291 (805)
+.++
T Consensus 226 ~~~~ 229 (234)
T 2j6e_L 226 EKTV 229 (234)
T ss_dssp CEEE
T ss_pred EEec
Confidence 4443
|
| >3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-16 Score=159.27 Aligned_cols=186 Identities=14% Similarity=0.131 Sum_probs=118.2
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECC--Eec------------CCCCceEEEecCcEEEEEEcccccCCCeEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG--KPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQGIYT 140 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g--~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 140 (805)
.+.+.+|++++|.|.+.+...+.+.+.|+|++ ..+ ....|+.+..++..++|.|.+++.+|+|.|+
T Consensus 11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~ 90 (256)
T 3ux9_B 11 SVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADYY 90 (256)
T ss_dssp EEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred cEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEEE
Confidence 57899999999999998422277899999942 111 1235888877777889999999999999999
Q ss_pred EEEEeCCee---EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCC
Q psy2166 141 CRAWNLAGE---TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 217 (805)
Q Consensus 141 C~a~n~~g~---~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~ 217 (805)
|.+.+..+. ......|.|...+..... .+. ..+ . .......++.+...+ .. .+.+
T Consensus 91 C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~--~~~--~~~----------~------~~~~~~~~~~~~~~~-~~-~v~~ 148 (256)
T 3ux9_B 91 CQVRDNNENEWVFGGGTKLTVLGSGGSTIT--SYN--VYY----------T------KLSSSGSEVQLVESG-GG-LVQP 148 (256)
T ss_dssp EEEEETTTTEEEECCCEEEEEC------------------------------------------CCEEEEEC-CE-EECT
T ss_pred EEEEECCCCceEECCCEEEEEECCCCCcCc--cce--eEE----------e------ecCCCccceeEEcCC-Ce-EEcC
Confidence 999986432 223456776554311000 000 000 0 000000122333322 22 3789
Q ss_pred CceEEEEEEEeeCCCC--CeEEEEEEC--CEEc------c-----------CCCcEEEEEE--cCeEEEEEcCCCCcccE
Q psy2166 218 GEIAHFEASLIPVGDQ--TMTVEFLYN--GKPI------E-----------ASHRIRTVHA--FGMVVLEILGTKIEDTG 274 (805)
Q Consensus 218 g~~~~l~C~~~~~~~p--~~~i~W~k~--g~~l------~-----------~~~~~~~~~~--~~~~~L~i~~~~~~d~G 274 (805)
|++++|.|.+. +.+ .+.+.|||+ +..+ . ...++.+... .....|.|.+++.+|+|
T Consensus 149 G~~v~L~C~~~--~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG 226 (256)
T 3ux9_B 149 GGSLRLSCAAS--GFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTA 226 (256)
T ss_dssp TCCEEEEEEEE--SSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred CCeEEEEEEEe--CCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCE
Confidence 99999999984 444 789999986 3222 0 1125544443 34678999999999999
Q ss_pred EEEEEEEcCC
Q psy2166 275 VYTCRATNKW 284 (805)
Q Consensus 275 ~Y~C~~~n~~ 284 (805)
.|+|.|.|..
T Consensus 227 ~Y~C~~~~~~ 236 (256)
T 3ux9_B 227 VYYCARYIDF 236 (256)
T ss_dssp EEEEEEEETT
T ss_pred EEEEEEEcCC
Confidence 9999999864
|
| >2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ... | Back alignment and structure |
|---|
Probab=99.71 E-value=4.2e-17 Score=158.99 Aligned_cols=171 Identities=15% Similarity=0.153 Sum_probs=118.8
Q ss_pred ccCCCeEEEEEEEeecCCC-CcEEEEEECC--EEc------------cCCCceEEEEeCcEEEEEEcccCcCCceEEEEE
Q psy2166 316 LKDGDSAHFECTLTPVNDP-ELKVEWFHNG--KPI------------FHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCR 380 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p-~~~v~W~~~g--~~l------------~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~ 380 (805)
+.+|+.++|.|.+.+ +.+ .+.|.|+|++ ..+ ....++.+........|.|.+++.+|+|.|.|.
T Consensus 12 v~~G~~v~L~C~v~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 90 (216)
T 2xzc_L 12 AAPGQKVTISCSGSS-SNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCG 90 (216)
T ss_dssp ECTTCCEEEEEECCT-TTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred ecCCCeEEEEEEeec-CCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEEEEEE
Confidence 889999999999541 332 5789999853 221 113467666667778899999999999999999
Q ss_pred EEeCce-e-eEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEE
Q psy2166 381 AWNKYG-E-DFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE 458 (805)
Q Consensus 381 a~n~~g-~-~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (805)
|.|..+ . ......|.|..
T Consensus 91 ~~~~~~~~~~~~~~~l~V~~------------------------------------------------------------ 110 (216)
T 2xzc_L 91 TWDSSLNPVFGGGTKLEIKR------------------------------------------------------------ 110 (216)
T ss_dssp EECTTSCEEEBCCEEEEECC------------------------------------------------------------
T ss_pred EEeCCCcceECCCEEEEEcC------------------------------------------------------------
Confidence 999876 1 12234455421
Q ss_pred EEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCC-cEEEEEECCE
Q psy2166 459 ARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPD-LVVEWFYNGK 537 (805)
Q Consensus 459 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~-~~v~W~~~g~ 537 (805)
...+|.+....+... ..+|+.++|.|.+.+. .|. +.|+|+|||+
T Consensus 111 ---------------------------------~~~~P~v~~~~~~~~-~~~g~~v~L~C~~~g~-~P~~~~v~W~k~g~ 155 (216)
T 2xzc_L 111 ---------------------------------TVAAPSVFIFPPSDE-QLKSGTASVVCLLNNF-YPREAKVQWKVDNA 155 (216)
T ss_dssp ---------------------------------CCBCCEEEEECCCHH-HHHTTEEEEEEEEEEE-BSSCCEEEEEETTE
T ss_pred ---------------------------------CCCCCceEEeCCChh-hccCCcEEEEEEEEeE-cCCceEEEEEECCe
Confidence 124666666444433 3468899999999952 454 4999999999
Q ss_pred EccCCCceE--EE-eeCC----EEEEEEccCCCCCCEEEEEEEEcCCcceEE
Q psy2166 538 KLPHGHRYR--TF-HDFG----IVILDILYCYEENSGVYECRATNKYGSDVT 582 (805)
Q Consensus 538 ~l~~~~~~~--~~-~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 582 (805)
.+..+.... .. ..++ .+.|.|..+..+|+|.|+|.|.|.......
T Consensus 156 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~ 207 (216)
T 2xzc_L 156 LQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPV 207 (216)
T ss_dssp ECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCE
T ss_pred ecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCce
Confidence 986551111 11 1112 236999999999999999999998765443
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=5e-15 Score=172.29 Aligned_cols=246 Identities=15% Similarity=0.188 Sum_probs=154.6
Q ss_pred CCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccC-CCeEEEEEEEeCCeeEEEEEEEEEe
Q psy2166 81 AQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDR-DQGIYTCRAWNLAGETFTSTTIYCS 159 (805)
Q Consensus 81 G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~-D~G~Y~C~a~n~~g~~~~~~~l~V~ 159 (805)
+..+.|.|.+. |.|.+.+.|.|+|..+..-.+ ..|.|..+... ..+.|.|.+.+..|..... .+.+.
T Consensus 91 ~g~l~v~c~~~--g~P~p~i~W~k~g~~~~~~~~---------~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~-~v~~~ 158 (731)
T 2v5y_A 91 PGLLNVYVKVN--NGPLGNPIWNISGDPTRTWNR---------AELAISTFWPNFYQVIFEVITSGHQGYLAID-EVKVL 158 (731)
T ss_dssp SEEEEEEEEET--TCCCCSEEEEECCCCCSSCEE---------EEEEECCCTTSCEEEEEEEEECSSCCEEEEC-CBEEE
T ss_pred cceEEEEEecC--CCCccceeEEEeCCcCCceeE---------EEEEEeecCCCceEEEEEEEecCCceEEEEe-eEEee
Confidence 45899999998 789999999999987643211 14555554233 3478888777766654321 22222
Q ss_pred ccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCCCeEEE-
Q psy2166 160 TKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVE- 238 (805)
Q Consensus 160 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~- 238 (805)
... -..+|.|. .+.+. .+.+|+.++|.|.+ .|.|.+.+.
T Consensus 159 ~~~------------------------------------~~~~p~~~-~~~~~-~v~~G~~v~l~C~~--~g~P~p~i~~ 198 (731)
T 2v5y_A 159 GHP------------------------------------CTRTPHFL-RIQNV-EVNAGQFATFQCSA--IGRTVAGDRL 198 (731)
T ss_dssp SSC------------------------------------CSSSCEEC-CCCCE-EEETTSCEEEEEEE--ESCCCTTCEE
T ss_pred ecc------------------------------------cccccccc-cccce-EEeCCCcEEEEEEe--CCCCCCceeE
Confidence 211 01456666 34443 58899999999998 688888887
Q ss_pred EE--ECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCee-EEEEEEEEEeccCCCC-CCeEEecCCCcc
Q psy2166 239 FL--YNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ-AEISVNLECVDKSKGQ-PPKFTSHIKSLE 314 (805)
Q Consensus 239 W~--k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~-~~~~~~l~v~~~~~~~-~p~~~~~~~~~~ 314 (805)
|+ ++|..+.......+........|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|...+... +|.+.
T Consensus 199 W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~~------- 271 (731)
T 2v5y_A 199 WLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLA------- 271 (731)
T ss_dssp EEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSSCCEEE-------
T ss_pred EEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCCCCCCccee-------
Confidence 88 6887765432211111122468999999999999999999999997 5666777776433211 11111
Q ss_pred cccCCCeEEEEEEEeec-C-CCC--cEEEEEECCEEccCCCceEEEEeCcEEEEEEcccCcCCceEEEEEEE--eCceee
Q psy2166 315 GLKDGDSAHFECTLTPV-N-DPE--LKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAW--NKYGED 388 (805)
Q Consensus 315 ~~~~g~~~~l~C~~~~~-~-~p~--~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~--n~~g~~ 388 (805)
......+.|.|..... + .+. ..|.|...+. .+..........+.|.++...+.+.|+|.|. |..|..
T Consensus 272 -~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~------~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s 344 (731)
T 2v5y_A 272 -SVGATYLWIQLNANSINGDGPIVAREVEYCTASG------SWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTG 344 (731)
T ss_dssp -EECSSCEEEECCCSSBSSCSCCCEEEEEEEESSS------SCEEEEECCSSEEEECSCCTTCEEEEEEEEECSSTTCSC
T ss_pred -ccCCceEEEEeCCcccCCCCccEEEEEEEEECCC------CceEEeccCcceEEEeCCCCCCEEEEEEEEEecCCCccc
Confidence 2234678888875311 1 222 2466655421 1111111122357889999999999999999 988876
Q ss_pred EEEE
Q psy2166 389 FTRA 392 (805)
Q Consensus 389 ~~~~ 392 (805)
..+.
T Consensus 345 ~~S~ 348 (731)
T 2v5y_A 345 SPGP 348 (731)
T ss_dssp CBCC
T ss_pred cCCC
Confidence 5443
|
| >3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.9e-16 Score=158.89 Aligned_cols=146 Identities=16% Similarity=0.186 Sum_probs=93.0
Q ss_pred ceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceE---EEEEEEEeeccccccccccccccCCCCCCCC-CCCCCCC
Q psy2166 617 RYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDV---TKASLKCVSKTNLILESQLPELRRQPAGVPD-SEDGRPP 692 (805)
Q Consensus 617 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~---~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~-~~~~~~P 692 (805)
++.+...++...|.|.+++.+|+|.|.|.|.|..+... ....|.|...+...... + ...+.. .....++
T Consensus 64 r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~--~-----~~~~~~~~~~~~~~ 136 (256)
T 3ux9_B 64 RFSGSKSGTSASLAITGLQSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITS--Y-----NVYYTKLSSSGSEV 136 (256)
T ss_dssp TEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEC-----------------------------CC
T ss_pred cEEEEccCCEEEEEECCCChhhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCcc--c-----eeEEeecCCCccce
Confidence 44444455667799999999999999999999765332 34677777643210000 0 000000 0000122
Q ss_pred eeeecCCcccccCCCCeEEEEEEEeecCCC--CeEEEEEEC--CEEc-----------------cCCCCeEEEee--CcE
Q psy2166 693 QFTSEFQHLSNLSEGEIAHFEASLIPVGDQ--TMTVEFLYN--GKPI-----------------EASHRIRTVHA--FGM 749 (805)
Q Consensus 693 ~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p--~~~v~W~~~--g~~l-----------------~~~~~~~~~~~--~~~ 749 (805)
.+.. +... .+.+|++++|.|.+. +.| .+.+.|+|+ +..+ ....|+.+..+ ...
T Consensus 137 ~~~~-~~~~-~v~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 212 (256)
T 3ux9_B 137 QLVE-SGGG-LVQPGGSLRLSCAAS--GFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNT 212 (256)
T ss_dssp EEEE-ECCE-EECTTCCEEEEEEEE--SSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTE
T ss_pred eEEc-CCCe-EEcCCCeEEEEEEEe--CCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCE
Confidence 3333 3344 689999999999998 766 789999996 3221 11236666554 456
Q ss_pred EEEEEcCCCCCCCEEEEEEEEcCC
Q psy2166 750 VVLEILGTKIEDTGVYTCRATNKW 773 (805)
Q Consensus 750 ~~L~i~~v~~~d~G~Y~C~a~N~~ 773 (805)
..|+|.+++.+|+|.|+|.|.|..
T Consensus 213 ~~L~I~~v~~~DsG~Y~C~~~~~~ 236 (256)
T 3ux9_B 213 LYLQMNSLRAEDTAVYYCARYIDF 236 (256)
T ss_dssp EEEEECSCCGGGCEEEEEEEEETT
T ss_pred EEEEECCCChhhCEEEEEEEEcCC
Confidence 789999999999999999999964
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* | Back alignment and structure |
|---|
Probab=99.71 E-value=8.8e-18 Score=161.57 Aligned_cols=167 Identities=13% Similarity=0.159 Sum_probs=97.5
Q ss_pred CCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeecccccccccccc-cc
Q psy2166 599 QLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPE-LR 677 (805)
Q Consensus 599 ~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~-~~ 677 (805)
|.|.+.|+|+|..+.... .....|.|.+++.+|+|.|+|.+.+.. + ..+.|.|...+.......... ..
T Consensus 28 p~~~i~W~k~g~~l~~~~-------~~~~~L~i~~v~~~DsG~Y~C~~~~~~-s--~~~~v~v~~~~~~~~~~~~~~~~~ 97 (204)
T 1sy6_A 28 EAKNITWFKDGKMIGFLT-------EDKKKWNLGSNAKDPRGMYQCKGSQNK-S--KPLQVYYRMGSADDAKKDAAKKDD 97 (204)
T ss_dssp CSSEEEEEETTEEEEEEE-------SSCCCEEEEEGGGCCEEEEEEESSSSC-C--CCEEEEEEC---------------
T ss_pred CCCEEEEEECCEECCCCC-------CCCCeEEeCCCCcCCCEEEEEEecCCC-C--eeEEEEEEEecccccccccccccc
Confidence 467999999999885320 112349999999999999999975532 2 224444431000000000000 00
Q ss_pred CCCCCCC-C--CCCCCCCeeeecCCcccccC-CCCeEEEEEEEeecCCCCeEEEEEECCEEccCCC-CeEEEeeCcEEEE
Q psy2166 678 RQPAGVP-D--SEDGRPPQFTSEFQHLSNLS-EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH-RIRTVHAFGMVVL 752 (805)
Q Consensus 678 ~~~~~~~-~--~~~~~~P~~~~~~~~~~~v~-~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~-~~~~~~~~~~~~L 752 (805)
....... . .....+|.+...+. .+. +|++++|.|. |.|.|.|+|+|+|..+.... +..+....+ .|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~p~---~v~~~G~~v~L~C~----g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~--~L 168 (204)
T 1sy6_A 98 AKKDDAKKDGSDGNEEMGGITQTPY---KVSISGTTVILTCP----QYPGSEILWQHNDKNIGGDEDDKNIGSDED--HL 168 (204)
T ss_dssp ---------------------CCCC---EEEEETTEEEEECS----CCCSSCEEEEETTEEESCCTTCTTEEEETT--EE
T ss_pred ccccccccccccccccccceecCCc---eeeecCCcEEEEcC----CCCCCceEEEECCEECCCccCCceEecCCC--EE
Confidence 0000000 0 00001233322222 233 8999999998 67899999999999886542 222233344 79
Q ss_pred EEcCC-CCCCCEEEEEEEEcCCcc-EEEEEEEEE
Q psy2166 753 EILGT-KIEDTGVYTCRATNKWGQ-AEISVNLEC 784 (805)
Q Consensus 753 ~i~~v-~~~d~G~Y~C~a~N~~G~-~~~~~~l~V 784 (805)
.|.++ ..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 169 ~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~ 202 (204)
T 1sy6_A 169 SLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202 (204)
T ss_dssp EETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred EEeeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence 99999 999999999999999996 355555554
|
| >1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.71 E-value=5.2e-18 Score=164.94 Aligned_cols=171 Identities=14% Similarity=0.163 Sum_probs=119.2
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEEC--CEEcc------------CCCceEEEEeCcEEEEEEcccCcCCceEEEEEE
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFHN--GKPIF------------HKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRA 381 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~--g~~l~------------~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a 381 (805)
+.+|+.++|.|.+. +.|.+.+.|+|+ |..+. ...++.+........|.|.+++.+|+|.|+|.|
T Consensus 11 v~~G~~v~L~C~~~--~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 88 (212)
T 1nfd_E 11 VTVGETVKITCSGD--QLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCLS 88 (212)
T ss_dssp EETTSCCCEEEEET--TGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEEE
T ss_pred EeCCCcEEEEEecC--CCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEEEEE
Confidence 78999999999986 777778999984 33221 135676666667778999999999999999999
Q ss_pred EeC-ceee--EEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEE
Q psy2166 382 WNK-YGED--FTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFE 458 (805)
Q Consensus 382 ~n~-~g~~--~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (805)
.|. .+.. .....|.|...
T Consensus 89 ~n~~~~~~~~~~~~~l~V~~~----------------------------------------------------------- 109 (212)
T 1nfd_E 89 SYGDNNDLVFGSGTQLTVLRG----------------------------------------------------------- 109 (212)
T ss_dssp EETTTTEEEECCCEEEEEECC-----------------------------------------------------------
T ss_pred EcccCcccccCCceEEEEccC-----------------------------------------------------------
Confidence 973 2211 12244544311
Q ss_pred EEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEE
Q psy2166 459 ARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKK 538 (805)
Q Consensus 459 ~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~ 538 (805)
...+|.+....+... +.+|+.++|.|.+.+..++.+.|+|+|||+.
T Consensus 110 ---------------------------------~~~~p~v~~~~~~~~-~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~ 155 (212)
T 1nfd_E 110 ---------------------------------PKSSPKVTVFPPSPE-ELRTNKATLVCLVNDFYPGSATVTWKANGAT 155 (212)
T ss_dssp ---------------------------------CCBCCEEECCCCCHH-HHHTTEECCCEEEEEEBSSCCEEEEEETTEE
T ss_pred ---------------------------------CCCCCEEEeeCCchH-hccCCceEEEEEEEeeECCccEEEEEECCeE
Confidence 124566665444433 5689999999999963223389999999999
Q ss_pred ccCCCceEE--EeeCC---EEEEEEccCCCCCCEEEEEEEEcCCcceE
Q psy2166 539 LPHGHRYRT--FHDFG---IVILDILYCYEENSGVYECRATNKYGSDV 581 (805)
Q Consensus 539 l~~~~~~~~--~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 581 (805)
+..+..... ...++ .+.|.|.++..+|+|.|+|.|.|..+...
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~ 203 (212)
T 1nfd_E 156 INDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVE 203 (212)
T ss_dssp ECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCC
T ss_pred cCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEE
Confidence 865432110 01111 23499999999999999999999877643
|
| >4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=3.2e-17 Score=160.79 Aligned_cols=178 Identities=16% Similarity=0.170 Sum_probs=115.3
Q ss_pred cCCCCceecCCCcEEEEEEEecCCCCCc---eEEEEECCEecC----------------CCCceEEE-------ecCcEE
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPKNDPNL---KIEWIFNGKPLE----------------LGSRFKTT-------ADFGFV 124 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~---~v~W~k~g~~i~----------------~~~~~~~~-------~~~~~~ 124 (805)
..++.+.+..|++|+|.|.+.+ .+.+ .|+|+|++..+. ...+.... ...+..
T Consensus 6 ~vp~~V~~~~G~~v~L~C~~~~--~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (225)
T 4fmk_A 6 RVLPEVRGRLGGTVELPCHLLP--PTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDA 83 (225)
T ss_dssp ECCSEEEEETTSCEEECCEECS--SCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBC
T ss_pred EeCCEEEEecCCCEEEEEEEEC--CCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcE
Confidence 3344678899999999999984 4433 489999864331 11122221 122345
Q ss_pred EEEEcccccCCCeEEEEEEEeCCeeEEEE-EEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCC
Q psy2166 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTS-TTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPP 203 (805)
Q Consensus 125 ~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 203 (805)
+|.|.+++.+|+|.|+|.|.+..+..... ..+.+..+ |
T Consensus 84 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~ 122 (225)
T 4fmk_A 84 TLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQ-----------------------------------------P 122 (225)
T ss_dssp CEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBC-----------------------------------------C
T ss_pred EEEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecC-----------------------------------------C
Confidence 79999999999999999999876554433 33444322 2
Q ss_pred ceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcC----eEEEEEcCCCCcccEEEEEE
Q psy2166 204 QFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG----MVVLEILGTKIEDTGVYTCR 279 (805)
Q Consensus 204 ~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~ 279 (805)
.+...+... ....++.+.+.|.+. .+.|.+.+.|++++..+....... ...++ .+.|.|.++..+|+|.|+|.
T Consensus 123 ~~~~~~~~~-~~~~~~~~~~~c~~~-~~~P~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~s~L~i~~~~~~d~g~YtC~ 199 (225)
T 4fmk_A 123 ENHAEAQEV-TIGPQSVAVARCVST-GGRPPARITWISSLGGEAKDTQEP-GIQAGTVTIISRYSLVPVGRADGVKVTCR 199 (225)
T ss_dssp EEEEEECCB-CCSSSCEEEEEEEEE-EEBSCCEEEEECSSCCEEEEEEEE-CSSTTCEEEEEEEEECCCGGGTTCEEEEE
T ss_pred ceeecccce-eecceeeeeeeeeec-CCCCCCEEEEEECCccccCCcceE-EecCCCEEEEEEEEEeeCCHHHCCEEEEE
Confidence 222222222 255677788888764 577889999999876553322111 11111 24799999999999999999
Q ss_pred EEcCCeeEEEEEEEE
Q psy2166 280 ATNKWGQAEISVNLE 294 (805)
Q Consensus 280 ~~n~~g~~~~~~~l~ 294 (805)
|.|..+....+..+.
T Consensus 200 a~N~~~~~~~~~~v~ 214 (225)
T 4fmk_A 200 VEHESFEEPILLPVT 214 (225)
T ss_dssp EECTTCSSCEEEEEE
T ss_pred EEcCCCCeEEEEEEE
Confidence 999887654444443
|
| >3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O | Back alignment and structure |
|---|
Probab=99.71 E-value=3.8e-17 Score=138.03 Aligned_cols=97 Identities=24% Similarity=0.335 Sum_probs=87.5
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEE
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECR 572 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 572 (805)
..||.|...+.+.. +.+|++++|.|.+. |.|.|.|+|+|||+.|..+.++.+..+++...|.|.+++.+|+|.|+|.
T Consensus 11 ~~pP~f~~~p~~~~-v~~G~~~~l~C~~~--G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 87 (107)
T 3knb_B 11 GSPPCFLRFPRPVR-VVSGAEAELKCVVL--GEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCR 87 (107)
T ss_dssp CEEEEEEECCCCEE-EETTSCEEEEEEEE--EESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEE
T ss_pred CCCCEEEeCCCcEE-EeCCCcEEEEEEEE--EecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEE
Confidence 46789988877765 89999999999999 6788999999999999999999988888888999999999999999999
Q ss_pred EEcCCcceEEEEEEEEeeee
Q psy2166 573 ATNKYGSDVTKASLKCVSKT 592 (805)
Q Consensus 573 a~n~~g~~~~~~~l~V~~~~ 592 (805)
|.|..|..+.++.|.|..+|
T Consensus 88 a~N~~G~~~~~~~l~V~~pP 107 (107)
T 3knb_B 88 ARNAAGEAYAAAAVTVLEPP 107 (107)
T ss_dssp EEETTEEEEEEEEEEEEC--
T ss_pred EEECCCEEEEEEEEEEEcCC
Confidence 99999999999999998754
|
| >3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ... | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-17 Score=160.44 Aligned_cols=177 Identities=17% Similarity=0.143 Sum_probs=117.5
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEecC----------------CCCceEEEec--CcEEEEEEcccc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPLE----------------LGSRFKTTAD--FGFVTLDLTEVY 132 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i~----------------~~~~~~~~~~--~~~~~L~I~~~~ 132 (805)
+..+.+.+|++++|.|.+.+...+.+.|.|+|+ |..+. ...|+.+..+ ++..+|.|.+++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~ 86 (210)
T 3d9a_H 7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVT 86 (210)
T ss_dssp ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCC
Confidence 335789999999999999842113479999985 32211 2457777653 356799999999
Q ss_pred cCCCeEEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccc
Q psy2166 133 DRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHL 212 (805)
Q Consensus 133 ~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 212 (805)
.+|+|.|+|.+.|.. .......|.|.... ..+|.+....+..
T Consensus 87 ~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~-------------------------------------~~~P~v~~~~~~~ 128 (210)
T 3d9a_H 87 TEDTATYYCANWDGD-YWGQGTLVTVSAAK-------------------------------------TTPPSVYPLAPGS 128 (210)
T ss_dssp GGGCEEEEEEETTSS-CBCCCEEEEECCCC-------------------------------------CBCCEEEEECCTT
T ss_pred cccCEEEEEEEecCc-ccccceEEEeccCC-------------------------------------CCCCEEEEecCCc
Confidence 999999999998853 11123456664311 1335554333222
Q ss_pred cccCCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCCCcEEEEEEc---CeEEEEEcCCCCcccEEEEEEEEcCCeeEE
Q psy2166 213 SNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRIRTVHAF---GMVVLEILGTKIEDTGVYTCRATNKWGQAE 288 (805)
Q Consensus 213 ~~v~~g~~~~l~C~~~~~~~p~~-~i~W~k~g~~l~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~ 288 (805)
.+.+|+.++|.|.+. ...|.+ .+.|+++|..+...........+ ....|.|.++..+| |.|+|.|.|..+...
T Consensus 129 -~~~~g~~v~L~C~~~-g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~ 205 (210)
T 3d9a_H 129 -AAQTNSMVTLGCLVK-GYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTK 205 (210)
T ss_dssp -SCCCSSEEEEEEEEE-EEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEE
T ss_pred -ccccCCcEEEEEEEe-eEecCCcEEEEeeCCcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcc
Confidence 367899999999984 233777 99999998764311100011111 13568998888877 999999999888765
Q ss_pred EE
Q psy2166 289 IS 290 (805)
Q Consensus 289 ~~ 290 (805)
..
T Consensus 206 ~~ 207 (210)
T 3d9a_H 206 VD 207 (210)
T ss_dssp EE
T ss_pred cc
Confidence 43
|
| >2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=158.74 Aligned_cols=178 Identities=17% Similarity=0.183 Sum_probs=117.4
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEECC--Ee---c---------CCCCceEEEecCcEEEEEEcccccCCCeE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG--KP---L---------ELGSRFKTTADFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g--~~---i---------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 138 (805)
+..+.+.+|++++|.|.+. +.|.+.|.|+|+. .. + ....|+.+..++...+|.|.+++.+|+|.
T Consensus 8 p~~~~v~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 85 (242)
T 2znx_A 8 PATLSVTPGNSVSLSCRAS--QSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGM 85 (242)
T ss_dssp CSEEEECTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred CCeEEEcCCCcEEEEEEeC--CCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEE
Confidence 3467899999999999998 5778899999953 11 1 12458887767777899999999999999
Q ss_pred EEEEEEeCCeeE-EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCC
Q psy2166 139 YTCRAWNLAGET-FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 217 (805)
Q Consensus 139 Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~ 217 (805)
|.|.+.|..+.. .....|.|..++...... .....++.+...+... .+.+
T Consensus 86 Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~-~v~~ 136 (242)
T 2znx_A 86 YFCQQSNSXPYTFGGGTKLEITGGGGSGGGG----------------------------SGGGGSDIQLQESGPS-LVKP 136 (242)
T ss_dssp EEEEECSSSSCEECCCEEEEEC-------------------------------------------CCEEEEECCS-EECT
T ss_pred EEEeEecCCceEECCCEEEEEcCCCCCCccc----------------------------ccccccceeeecCCcc-eecC
Confidence 999999875432 223456665432100000 0000112222222233 3789
Q ss_pred CceEEEEEEEeeCCCC--CeEEEEEEC--CEEcc----------------CCCcEEEEEE--cCeEEEEEcCCCCcccEE
Q psy2166 218 GEIAHFEASLIPVGDQ--TMTVEFLYN--GKPIE----------------ASHRIRTVHA--FGMVVLEILGTKIEDTGV 275 (805)
Q Consensus 218 g~~~~l~C~~~~~~~p--~~~i~W~k~--g~~l~----------------~~~~~~~~~~--~~~~~L~i~~~~~~d~G~ 275 (805)
|++++|.|.+. +.| .+.+.|+|+ +..+. ...++....+ .....|.|.+++.+|+|.
T Consensus 137 G~~v~L~C~~~--g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~ 214 (242)
T 2znx_A 137 SQTLSLTCSVT--GDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTAT 214 (242)
T ss_dssp TSCEEEEEEEE--SSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred CCeEEEEEEEE--ccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEE
Confidence 99999999984 443 578999994 33221 1334444332 245789999999999999
Q ss_pred EEEEEEcC
Q psy2166 276 YTCRATNK 283 (805)
Q Consensus 276 Y~C~~~n~ 283 (805)
|+|.|.|.
T Consensus 215 Y~C~a~~~ 222 (242)
T 2znx_A 215 YYCANXDG 222 (242)
T ss_dssp EEEEETTS
T ss_pred EEEeccCC
Confidence 99999873
|
| >2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-15 Score=174.21 Aligned_cols=415 Identities=13% Similarity=0.088 Sum_probs=236.9
Q ss_pred CCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCC-CCcccEEEEEEEEcCCeeEEEEEEEE
Q psy2166 216 SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGT-KIEDTGVYTCRATNKWGQAEISVNLE 294 (805)
Q Consensus 216 ~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~~~n~~g~~~~~~~l~ 294 (805)
..+..+.|.|.+ .|.|.+.+.|.|+|..+..-.. ..|.|..+ ..+..+.|.|.+.+..|..... .+.
T Consensus 89 ~~~g~l~v~c~~--~g~P~p~i~W~k~g~~~~~~~~---------~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~-~v~ 156 (731)
T 2v5y_A 89 SPPGLLNVYVKV--NNGPLGNPIWNISGDPTRTWNR---------AELAISTFWPNFYQVIFEVITSGHQGYLAID-EVK 156 (731)
T ss_dssp SCSEEEEEEEEE--TTCCCCSEEEEECCCCCSSCEE---------EEEEECCCTTSCEEEEEEEEECSSCCEEEEC-CBE
T ss_pred CCcceEEEEEec--CCCCccceeEEEeCCcCCceeE---------EEEEEeecCCCceEEEEEEEecCCceEEEEe-eEE
Confidence 345678888887 7999999999999987643221 24566554 3344588999887777765432 223
Q ss_pred EeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEE-EE--ECCEEccCCCceEEEEeCcEEEEEEcccCc
Q psy2166 295 CVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVE-WF--HNGKPIFHKNRVKMVSDFGFVVMDIAYVQS 371 (805)
Q Consensus 295 v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~-W~--~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~ 371 (805)
+.......+|.+. .+... .+.+|+.++|.|.+. |.|.+.+. |+ ++|+.+.......+........|.|.++..
T Consensus 157 ~~~~~~~~~p~~~-~~~~~-~v~~G~~v~l~C~~~--g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~ 232 (731)
T 2v5y_A 157 VLGHPCTRTPHFL-RIQNV-EVNAGQFATFQCSAI--GRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTK 232 (731)
T ss_dssp EESSCCSSSCEEC-CCCCE-EEETTSCEEEEEEEE--SCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCT
T ss_pred eeecccccccccc-cccce-EEeCCCcEEEEEEeC--CCCCCceeEEEecCCCccccccceEEeccccceEEEEEccccc
Confidence 3332233566665 34443 488999999999998 88888887 77 678776433211111111235799999999
Q ss_pred CCceEEEEEEEeCcee-eEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeec
Q psy2166 372 HDSGEYVCRAWNKYGE-DFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLK 450 (805)
Q Consensus 372 ~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (805)
.|.|.|+|.|.|..|. ....+.|.|..+|..
T Consensus 233 ~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~------------------------------------------------ 264 (731)
T 2v5y_A 233 RDAGKYRCMIRTEGGVGISNYAELVVKEPPVP------------------------------------------------ 264 (731)
T ss_dssp TTCEEEEEEEEETTEEEECCCEEEEEECCCCB------------------------------------------------
T ss_pred ccCeEEEEEEECCCCCcceeeEEEEEecCCCC------------------------------------------------
Confidence 9999999999999998 666677877644321
Q ss_pred CCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeC-C-CCCc
Q psy2166 451 EGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPV-T-DPDL 528 (805)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~-g-~p~~ 528 (805)
..+|.+. ......+.|.|..... | .|..
T Consensus 265 ------------------------------------------~~~p~~~--------~~~~~~v~l~w~~~~~~g~~~i~ 294 (731)
T 2v5y_A 265 ------------------------------------------IAPPQLA--------SVGATYLWIQLNANSINGDGPIV 294 (731)
T ss_dssp ------------------------------------------SSCCEEE--------EECSSCEEEECCCSSBSSCSCCC
T ss_pred ------------------------------------------CCCccee--------ccCCceEEEEeCCcccCCCCccE
Confidence 1223322 1234567888875311 1 2222
Q ss_pred --EEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEE--cCCcceEEEEEEEEeeeee--------e--
Q psy2166 529 --VVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRAT--NKYGSDVTKASLKCVSKTN--------L-- 594 (805)
Q Consensus 529 --~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~--n~~g~~~~~~~l~V~~~~~--------~-- 594 (805)
.+.|.+.+. ............+.|.++...+...|+|.|. |..|....+..+.+...+. +
T Consensus 295 ~Y~v~~~~~~~------~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~ 368 (731)
T 2v5y_A 295 AREVEYCTASG------SWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEV 368 (731)
T ss_dssp EEEEEEEESSS------SCEEEEECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEE
T ss_pred EEEEEEEECCC------CceEEeccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCceeEE
Confidence 566665421 1111122222468999998888889999999 9999765433333332111 1
Q ss_pred -eecCCCCeEEEEECCEEcc--------------C-CCceE-----EEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcce
Q psy2166 595 -ILESQLPEVEWFYNGKKLP--------------H-GHRYR-----TFHDFGIVILDILYCYEENSGVYECRATNKYGSD 653 (805)
Q Consensus 595 -~~~~~~p~v~W~~~g~~l~--------------~-~~~~~-----~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 653 (805)
.+....-.++|........ . +.... +........+.|.++.....+.|++.|.|..|..
T Consensus 369 ~~~~~~sv~l~W~~p~~~~~~~~~~~y~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~s 448 (731)
T 2v5y_A 369 VEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRK 448 (731)
T ss_dssp EEECSSCEEEEEECCCHHHHCSSSCEEEEEEEEESSSSEEEEEEEECCSSCSSCEEEECSCCSSCEEEEEEEEECSSCEE
T ss_pred EeccCCeEEEEEECCCcccccceeeeEEEEEEEccCCCCccceeEEEEecCCcceEEECCCCCCCEEEEEEEEEcCCCCC
Confidence 0111122667765321100 0 00000 0111223457889999999999999999999986
Q ss_pred EEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccC-CCCeEEEEEEEeecCCC---C--eEEE
Q psy2166 654 VTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLS-EGEIAHFEASLIPVGDQ---T--MTVE 727 (805)
Q Consensus 654 ~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~-~G~~~~l~C~~~~~g~p---~--~~v~ 727 (805)
. +..+.+.... ..|. .+|.+ .. .+. ....+.|.-..- ..+ . -.|.
T Consensus 449 ~-S~~~~~~T~~------~~P~--------------~p~~~-----~~-~~~~~~~si~l~W~~P--~~~~g~i~~Y~V~ 499 (731)
T 2v5y_A 449 E-SQELIVQTDE------DLPG--------------AVPTE-----SI-QGSTFEEKIFLQWREP--TQTYGVITLYEIT 499 (731)
T ss_dssp E-CCCEEEECCC------CCCC--------------CCCTT-----TC-EEEEETTEEEEECCCC--SCCSSCCCEEEEE
T ss_pred C-CceEEEEccC------CCCC--------------CCCcc-----eE-EeeecCCeEEEEEcCC--CCCCCCccceEEE
Confidence 4 4444444311 0010 11100 11 111 133444443321 100 0 1344
Q ss_pred EEECCEE---ccC-CCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEE
Q psy2166 728 FLYNGKP---IEA-SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 779 (805)
Q Consensus 728 W~~~g~~---l~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~ 779 (805)
|...+.. +.. .....+........+.|.++.....-.++..|.|..|....+
T Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~n~~G~g~~s 555 (731)
T 2v5y_A 500 YKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPA 555 (731)
T ss_dssp EEEEEECC---CCCCCEEEEEEETTCCEEEECSCCTTEEEEEEEEEEETTEEEEEE
T ss_pred EEECcCCCccccccCcceEEeecCCcceEEecCCCCCCEEEEEEEEEeCCccCCCc
Confidence 4432211 111 111122233334468899999988888999999999966555
|
| >4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E | Back alignment and structure |
|---|
Probab=99.71 E-value=4.7e-17 Score=162.28 Aligned_cols=177 Identities=13% Similarity=0.113 Sum_probs=118.9
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEE----------------CCEecCCC---CceEEEec-CcEEEEEEcccc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF----------------NGKPLELG---SRFKTTAD-FGFVTLDLTEVY 132 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k----------------~g~~i~~~---~~~~~~~~-~~~~~L~I~~~~ 132 (805)
+..+.+.+|+.++|.|.+. +.+.+.|.|+| ++...... .|+.+..+ .+.++|.|.+++
T Consensus 8 p~~~~v~~G~~v~L~C~~~--~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~ 85 (246)
T 4dzb_B 8 PSWVISKSGTSVKIECRSL--DFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAH 85 (246)
T ss_dssp CSEEEEETTSCEEEEEEES--SSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCC
T ss_pred CcEEEEeCCCcEEEEeEec--CCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCC
Confidence 3467899999999999998 56888999999 43333332 57776653 467799999999
Q ss_pred cCCCeEEEEEEEeCCe----eEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecc
Q psy2166 133 DRDQGIYTCRAWNLAG----ETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSE 208 (805)
Q Consensus 133 ~~D~G~Y~C~a~n~~g----~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 208 (805)
.+|+|.|+|.+.+..+ .......|.|..... ...+|.+...
T Consensus 86 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~-----------------------------------~~~~P~i~~~ 130 (246)
T 4dzb_B 86 PEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLK-----------------------------------NVFPPEVAVF 130 (246)
T ss_dssp GGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGG-----------------------------------GCBCCEEEEE
T ss_pred HHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCC-----------------------------------cccCCceEee
Confidence 9999999999987643 222344566653110 0123544433
Q ss_pred cccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEE-------EcC----eEEEEEcCCCCcc-cEEE
Q psy2166 209 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH-------AFG----MVVLEILGTKIED-TGVY 276 (805)
Q Consensus 209 ~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~-------~~~----~~~L~i~~~~~~d-~G~Y 276 (805)
......+.+|+.++|.|.+.....+...+.|+|+|..+.......... .++ .+.|.|.....+| +|.|
T Consensus 131 ~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~Y 210 (246)
T 4dzb_B 131 EPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHF 210 (246)
T ss_dssp CCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEE
T ss_pred cCCchhccCCCcEEEEEEEccCcCCceEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeE
Confidence 322223567999999999843222234999999999987542211100 122 1358888888888 9999
Q ss_pred EEEEEcCCee
Q psy2166 277 TCRATNKWGQ 286 (805)
Q Consensus 277 ~C~~~n~~g~ 286 (805)
+|.|.|....
T Consensus 211 tC~v~~~~~~ 220 (246)
T 4dzb_B 211 RCQVQFYGLS 220 (246)
T ss_dssp EEEEEECCBC
T ss_pred EEEEEecCCC
Confidence 9999987544
|
| >4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.4e-17 Score=160.42 Aligned_cols=180 Identities=18% Similarity=0.246 Sum_probs=122.3
Q ss_pred ccCCCceEEEEEEEeeCCCC-----CeEEEEEECCEEc-------------cCCCcEEEEE---EcCeEEEEEcCCCCcc
Q psy2166 214 NLSEGEIAHFEASLIPVGDQ-----TMTVEFLYNGKPI-------------EASHRIRTVH---AFGMVVLEILGTKIED 272 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~p-----~~~i~W~k~g~~l-------------~~~~~~~~~~---~~~~~~L~i~~~~~~d 272 (805)
.+.+|+.++|.|.+ .+.| .+.+.|++++... ....++.... ..+...|.|.+++.+|
T Consensus 6 ~~~~G~~v~L~C~~--~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D 83 (222)
T 4i0k_A 6 VALVDTDATLRCSF--SPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTD 83 (222)
T ss_dssp CCCTTSCEEECCBC--CCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGG
T ss_pred EEECCCCeEEEEEe--cCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCccccc
Confidence 47899999999988 4443 3899999987432 1112222211 1124679999999999
Q ss_pred cEEEEEEEEcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEE-CCEEccCCC
Q psy2166 273 TGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFH-NGKPIFHKN 351 (805)
Q Consensus 273 ~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~-~g~~l~~~~ 351 (805)
+|.|+|.+.+. +..+..+.|.|...+ ..|.+...+.. .+.+|+.++|.|.+.. +.|.+.+.|++ ++..+....
T Consensus 84 ~G~Y~C~~~~~-~~~~~~~~l~V~~~~--~~p~i~~~~~~--~v~~G~~~~l~C~~~~-g~P~~~v~W~~~~~~~~~~~~ 157 (222)
T 4i0k_A 84 EGSYTCFVSIQ-DFDSAAVSLQVAAPY--SKPSMTLEPNK--DLRPGNMVTITCSSYQ-GYPEAEVFWKDGQGVPLTGNV 157 (222)
T ss_dssp CSCEEEEEEEC-CCCCCCCCCCCCBCC--CCCEEECCC-------CCSEEEEEEEEEE-EBSCCEEEEECTTSCBCCSEE
T ss_pred CEEEEEEEEeC-CCceEEEEEEEEcCC--CCCcEEeCCCc--eecCCceEEEEEeccc-ccCCCeEEEEcCCCccCCCCc
Confidence 99999999985 333444555554321 34555544332 3778999999999942 78889999999 566654332
Q ss_pred ceEEEEe--CcEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEeccc
Q psy2166 352 RVKMVSD--FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGG 401 (805)
Q Consensus 352 ~~~~~~~--~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~ 401 (805)
....... +....|.|.++..+|+|.|+|.|.|..|.....+.|.|.++|.
T Consensus 158 ~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~ 209 (222)
T 4i0k_A 158 TTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPL 209 (222)
T ss_dssp EEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC---
T ss_pred ceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCcc
Confidence 2222222 2334588999999999999999999999999999999877653
|
| >3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=158.76 Aligned_cols=184 Identities=9% Similarity=0.065 Sum_probs=115.5
Q ss_pred CeEEecCCCCceecCCCcEEEEEEEecCCCCCce-----EEEEECCEecCC--------CC-------ceEEE---ecCc
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLK-----IEWIFNGKPLEL--------GS-------RFKTT---ADFG 122 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~-----v~W~k~g~~i~~--------~~-------~~~~~---~~~~ 122 (805)
|.+.+..+..+.+.+|++++|.|.+. +.|.+. |.|+|++..... +. +..+. ...+
T Consensus 3 ~~v~v~~p~~~~v~~G~~v~L~C~~~--g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
T 3pv7_A 3 LKVEMMAGGTQITPLNDNVTIFCNIF--YSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSG 80 (248)
T ss_dssp EEEECSTTSEEEEETTSCEEECCEEE--ESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTT
T ss_pred eEEEEeCCCCeEEeCCCCEEEeeEEe--cCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCC
Confidence 33444455567899999999999998 455444 999996432211 00 11110 0123
Q ss_pred EEEEEEcccccCCCeEEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCC
Q psy2166 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRP 202 (805)
Q Consensus 123 ~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (805)
..+|.|.+++.+|+|.|+|.+.+..+.......|.|..++
T Consensus 81 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P---------------------------------------- 120 (248)
T 3pv7_A 81 DASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASP---------------------------------------- 120 (248)
T ss_dssp BCCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCC----------------------------------------
T ss_pred cEEEEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEecCC----------------------------------------
Confidence 4469999999999999999999998888888888887543
Q ss_pred CceecccccccccCCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCCCc------E-EEEE-EcC----eEEEEEcCCC
Q psy2166 203 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHR------I-RTVH-AFG----MVVLEILGTK 269 (805)
Q Consensus 203 p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~-~i~W~k~g~~l~~~~~------~-~~~~-~~~----~~~L~i~~~~ 269 (805)
.+...+.. .+..|+.+.|.|.+. .+.|.+ .+.|+++|..+..... . .... .++ ...|.|....
T Consensus 121 -~v~~~~~~--~~~~~~~~~L~C~~~-g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~ 196 (248)
T 3pv7_A 121 -ASRLLLDQ--VGMKENEDKYMCESS-GFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQ 196 (248)
T ss_dssp -EEEEECC----------CEEEEEEE-EEBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--C
T ss_pred -ceEEecCC--ccccCCCcEEEEEEc-cEECCCeEEEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCcc
Confidence 33322222 245678888999984 226777 9999999975542210 0 1111 111 3578899999
Q ss_pred CcccEEEEEEEEcCCeeE--EEEEEEEE
Q psy2166 270 IEDTGVYTCRATNKWGQA--EISVNLEC 295 (805)
Q Consensus 270 ~~d~G~Y~C~~~n~~g~~--~~~~~l~v 295 (805)
.+|.|.|+|.|.|..+.. ...+.|.|
T Consensus 197 ~~d~g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 197 EDPGTVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp CCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred ccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence 999999999999988764 44555554
|
| >3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-16 Score=157.98 Aligned_cols=189 Identities=12% Similarity=0.117 Sum_probs=118.0
Q ss_pred cCCCCceecCCCcEEEEEEEecCCCCCceEEEEECC--Ee-------------cCCCCceEEE--ecCcEEEEEEccccc
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG--KP-------------LELGSRFKTT--ADFGFVTLDLTEVYD 133 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g--~~-------------i~~~~~~~~~--~~~~~~~L~I~~~~~ 133 (805)
..+..+.+.+|++++|.|.+. +.|.+.|.|+|.. .. .....|+.+. ......+|.|.+++.
T Consensus 8 q~p~~~~v~~G~~v~L~C~~~--~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~ 85 (256)
T 3tf7_C 8 QPDARVTVSEGASLQLRCKYS--YSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHR 85 (256)
T ss_dssp CSCSEEEEETTSCEEECCEEE--CSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCG
T ss_pred ecCceEEecCCCeEEEEEEeC--CCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCc
Confidence 344478899999999999998 5688899999832 11 1124466663 345677999999999
Q ss_pred CCCeEEEEEEEeCCee----EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccc
Q psy2166 134 RDQGIYTCRAWNLAGE----TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEF 209 (805)
Q Consensus 134 ~D~G~Y~C~a~n~~g~----~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 209 (805)
+|+|.|+|.+.|..+. ....+.|.|.......... .+ ..........+|.+...+
T Consensus 86 ~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~-~~--------------------~~~~~~~~~~~~~v~~~p 144 (256)
T 3tf7_C 86 SDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGG-GS--------------------GGGGSGGGGSEAAVTQSP 144 (256)
T ss_dssp GGCSEEEEEEECTTCTTCEEECCCEEEEEEC------------------------------------------CCEEESC
T ss_pred ccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCC-Cc--------------------CcccCCCCcCccEEEecC
Confidence 9999999999987542 2223456665311000000 00 000000011345566555
Q ss_pred ccccccCCCceEEEEEEEeeCCCCCeEEEEEECC--EEc---c------------CCCcEEEEE-EcCeEEEEEcCCCCc
Q psy2166 210 QHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG--KPI---E------------ASHRIRTVH-AFGMVVLEILGTKIE 271 (805)
Q Consensus 210 ~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g--~~l---~------------~~~~~~~~~-~~~~~~L~i~~~~~~ 271 (805)
... .+.+|+.++|.|.+ .+. .+.+.|||.. ..+ . ...++.... ......|.|.+++.+
T Consensus 145 ~~~-~v~~G~~v~L~C~~--~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~ 220 (256)
T 3tf7_C 145 RNK-VTVTGENVTLSCRQ--TNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPS 220 (256)
T ss_dssp SEE-EEETTCCEEECEEE--CSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGG
T ss_pred CEE-EEeCCCcEEEEEEc--CCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHH
Confidence 554 36799999999998 444 5689999832 111 0 012222221 223568999999999
Q ss_pred ccEEEEEEEEcCCee
Q psy2166 272 DTGVYTCRATNKWGQ 286 (805)
Q Consensus 272 d~G~Y~C~~~n~~g~ 286 (805)
|+|.|+|.|.|..|.
T Consensus 221 DsG~Y~C~a~n~~g~ 235 (256)
T 3tf7_C 221 QTSLYFCASSDAPGQ 235 (256)
T ss_dssp GCEEEEEEEEEETTE
T ss_pred HCEEEEEEecCCCCc
Confidence 999999999987654
|
| >2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.6e-17 Score=162.71 Aligned_cols=174 Identities=14% Similarity=0.191 Sum_probs=118.7
Q ss_pred cccCCCeEEEEEEEeecCCC-Cc-EEEEEECC--EEc------------cCCCceEEEEeCcEEEEEEcccCcCCceEEE
Q psy2166 315 GLKDGDSAHFECTLTPVNDP-EL-KVEWFHNG--KPI------------FHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378 (805)
Q Consensus 315 ~~~~g~~~~l~C~~~~~~~p-~~-~v~W~~~g--~~l------------~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~ 378 (805)
.+.+|+.++|.|.+. +.+ .+ .+.|+|++ ..+ ....++..........|.|.+++.+|+|.|.
T Consensus 30 ~v~~G~~v~L~C~~~--~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~ 107 (234)
T 2j6e_L 30 SGTPGQRVTISCSGS--SSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYY 107 (234)
T ss_dssp CBCTTCEEEEEEECC--TTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSEEE
T ss_pred EeeCCCcEEEEEEec--CCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEEEE
Confidence 388999999999997 433 34 79999863 222 1134666666667778999999999999999
Q ss_pred EEEEeCceee---EEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceE
Q psy2166 379 CRAWNKYGED---FTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSA 455 (805)
Q Consensus 379 C~a~n~~g~~---~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (805)
|.+.|..+.. ...+.|.|..
T Consensus 108 C~~~~~~~~~~~~~~~~~l~V~~--------------------------------------------------------- 130 (234)
T 2j6e_L 108 CATWDDSLSAVIFGGGTKLTVLG--------------------------------------------------------- 130 (234)
T ss_dssp EEEEETTTTEEEECCCBCCCBCC---------------------------------------------------------
T ss_pred EEEEcCCcceeEecCCEEEEEec---------------------------------------------------------
Confidence 9999987621 1112222210
Q ss_pred EEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCC-cEEEEEE
Q psy2166 456 HFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPD-LVVEWFY 534 (805)
Q Consensus 456 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~-~~v~W~~ 534 (805)
....+|.+....+... ..+|+.++|.|.+.+. .|+ +.|+|+|
T Consensus 131 -----------------------------------~~~~~p~v~~~~~~~~-~~~g~~v~L~C~~~g~-~p~~~~v~W~k 173 (234)
T 2j6e_L 131 -----------------------------------QPKAAPSVTLFPPSSE-ELQANKATLVCLISDF-FPGAVTVAWKA 173 (234)
T ss_dssp -----------------------------------CCCCCCCCCEECCCHH-HHTTSCCCEEECCCBC-SSCCCEEEEEE
T ss_pred -----------------------------------CCCCCCcccccCCChh-HhcCCceEEEEEEEEE-cCCceEEEEEE
Confidence 0124566655444433 4468999999999952 343 5999999
Q ss_pred CCEEccCCCceE-E--EeeC---CEEEEEEccCCCCCCEEEEEEEEcCCcceEEEE
Q psy2166 535 NGKKLPHGHRYR-T--FHDF---GIVILDILYCYEENSGVYECRATNKYGSDVTKA 584 (805)
Q Consensus 535 ~g~~l~~~~~~~-~--~~~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 584 (805)
||+.+..+.... . ..++ ..+.|.|..+..+|+|.|+|.|.|..+....++
T Consensus 174 ~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~ 229 (234)
T 2j6e_L 174 DGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV 229 (234)
T ss_dssp TTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEE
T ss_pred CCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEec
Confidence 999986542110 0 1111 235799999999999999999999987755443
|
| >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A | Back alignment and structure |
|---|
Probab=99.70 E-value=7e-17 Score=156.01 Aligned_cols=181 Identities=13% Similarity=0.107 Sum_probs=113.4
Q ss_pred CeEEecCCCCce-ecCCCcEEEEEEEecCC-CC-CceEEEEECCEecCCCCc-eEEEecC----cEEEEEEcccccCCCe
Q psy2166 66 PVFIVPLKPEFK-LGEAQPLHLEAQVEPKN-DP-NLKIEWIFNGKPLELGSR-FKTTADF----GFVTLDLTEVYDRDQG 137 (805)
Q Consensus 66 p~~~~~~~~~~~-v~~G~~v~L~C~~~~~~-~p-~~~v~W~k~g~~i~~~~~-~~~~~~~----~~~~L~I~~~~~~D~G 137 (805)
|.+.+..+.... +.+|+.++|.|.+.+.. .| .+.|.|+|++..+..... +.....+ ...+|.|.+++.+|+|
T Consensus 2 p~v~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G 81 (207)
T 2vol_A 2 SSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGK 81 (207)
T ss_dssp CEEEEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTC
T ss_pred CcEEEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCC
Confidence 444444443444 89999999999998432 13 459999999987653210 0000111 1247999999999999
Q ss_pred EEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCC
Q psy2166 138 IYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 217 (805)
Q Consensus 138 ~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~ 217 (805)
.|+|.|.|..+.......+.+.. ....+|.+...+.... ..+
T Consensus 82 ~Y~C~a~~~~~~~~~~~~v~~~~-------------------------------------~~~~~P~v~~~~~~~~-~~~ 123 (207)
T 2vol_A 82 EFKCRVNSAAFPAPIEKTISKTK-------------------------------------GRPKAPQVYTLPPPKE-QMA 123 (207)
T ss_dssp CEEEEEECTTCSSCEEEEECCCC-------------------------------------CCCBCCEEEEECCCTG-GGS
T ss_pred EEEEEEEccCCCCceEEEeccCC-------------------------------------CCCcCCeEEEeCCCHH-Hhc
Confidence 99999999876532222222100 0114566554444332 236
Q ss_pred CceEEEEEEEeeCCCCC-eEEEEEECCEEccCCCcEE-EEEEcC----eEEEEEcCCCCcccEEEEEEEEcCCe
Q psy2166 218 GEIAHFEASLIPVGDQT-MTVEFLYNGKPIEASHRIR-TVHAFG----MVVLEILGTKIEDTGVYTCRATNKWG 285 (805)
Q Consensus 218 g~~~~l~C~~~~~~~p~-~~i~W~k~g~~l~~~~~~~-~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~n~~g 285 (805)
|+.++|.|.+.. .+|. +.+.|+|+|..+....... ....++ .+.|.|.....+|.|.|+|.|.|...
T Consensus 124 g~~~~L~C~~~g-~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l 196 (207)
T 2vol_A 124 KDKVSLTCMITD-FFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGL 196 (207)
T ss_dssp SSEEEEEEEEEE-EBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred CCceEEEEEEee-EECCCCEEEEEECCEeccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCC
Confidence 999999999852 2444 5999999999875432111 112222 23466766666789999999999764
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-15 Score=141.35 Aligned_cols=239 Identities=15% Similarity=0.213 Sum_probs=158.7
Q ss_pred CceecCCCcEEEEEEEecCCCC---CceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDP---NLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETF 151 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p---~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~ 151 (805)
...+..|+.++|.|.+.+ |.| ...++|+|||..+..... .|.|..+...|+|.|+|.+.+..|...
T Consensus 11 ~~~i~~GdsVTLTatVaG-GkP~pspyTYqWyKDG~~IsGaT~----------tLti~s~t~sdSG~YqCvVTDa~Gcs~ 79 (304)
T 3shs_A 11 KRCFLAGDGFTLTATVAG-DEPLPSNLTYTWTKDDQPHENNTA----------TLTVADATSENAGSYKVTVQDTDTMTS 79 (304)
T ss_dssp CSSBCTTCCEEEEEEEEE-SSSCCCCEEEEEEETTEECSCCSS----------EEEESSCCGGGCEEEEEEEEETTTCCE
T ss_pred CccccCCCCEEEEEEecC-CCCCCCCceEEEEECCccccCCcc----------eEEeeeccccCCeEEEEEEEECCCCee
Confidence 567899999999999985 566 568999999988764322 689999999999999999999888766
Q ss_pred EEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEee-C
Q psy2166 152 TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIP-V 230 (805)
Q Consensus 152 ~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~-~ 230 (805)
....+.|.....+ .+....+....+..|..+.|.+.+.. .
T Consensus 80 tSs~VtVT~~a~l---------------------------------------~i~it~P~s~~vssg~sVtL~aTVt~SG 120 (304)
T 3shs_A 80 VESEVFLMEEAEL---------------------------------------IVNITEPQHFYVSSQTDVELHATVKFSG 120 (304)
T ss_dssp EECCCEEECBCCE---------------------------------------EEEESSCSEEEECSSCCEEEEEEEEETT
T ss_pred eeeeEEEeccCce---------------------------------------eEEecCCCceeccCCCeEEEEEEEeccC
Confidence 5555555543221 11111111112456788899887732 2
Q ss_pred CCC-----CeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCee--EEEEEEEEEeccCCCCC
Q psy2166 231 GDQ-----TMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ--AEISVNLECVDKSKGQP 303 (805)
Q Consensus 231 ~~p-----~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~--~~~~~~l~v~~~~~~~~ 303 (805)
|.| ..+++|||++..+.... .|++......++|.|+|++.|..+. ++.++.+.+...
T Consensus 121 GtppA~~~~yTYQWyKngt~IsgAq-----------~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~~----- 184 (304)
T 3shs_A 121 GKTPADNYELHYSWSKGEDVIDTTQ-----------DITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATM----- 184 (304)
T ss_dssp SCCSSTTCCCEEEEEETTEEEESSS-----------EEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECEE-----
T ss_pred CCCcccCCCceeEEeeCCeEccCcc-----------ccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEcc-----
Confidence 344 57999999998875443 4777788999999999999998652 455555555321
Q ss_pred CeEEecCCCcccccCCCeEEEEEEEee------cCCCCc--EEEEEE--CCEEcc----C-----CCceEEEEeCcEEEE
Q psy2166 304 PKFTSHIKSLEGLKDGDSAHFECTLTP------VNDPEL--KVEWFH--NGKPIF----H-----KNRVKMVSDFGFVVM 364 (805)
Q Consensus 304 p~~~~~~~~~~~~~~g~~~~l~C~~~~------~~~p~~--~v~W~~--~g~~l~----~-----~~~~~~~~~~~~~~l 364 (805)
.+....-....+..|+.+.|.-.+.. .|.|.. ++.|+. .|+.-. . -..+.+..+++ |
T Consensus 185 -~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 260 (304)
T 3shs_A 185 -NVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGH---L 260 (304)
T ss_dssp -EEEECCCSEEEEETTSCEEECCEEEEECCSCCTTCCEEEEEEEEEEECTTCCSCEEEESSSEECGGGEEECTTSC---E
T ss_pred -ccchhheEeehhhcCcEEEEEEEEeeccccCCCCCCceEEEEEEEEeecCccCchhhhhhhhhhhccceeCCCcc---e
Confidence 12222222223778999998766542 244543 467874 343211 1 12344444443 5
Q ss_pred EEcccCcCCceEEEEEEEe
Q psy2166 365 DIAYVQSHDSGEYVCRAWN 383 (805)
Q Consensus 365 ~i~~v~~~d~G~Y~C~a~n 383 (805)
.-.....+|...|.|.+..
T Consensus 261 ~~~~~~~~~~~~~~~~~~~ 279 (304)
T 3shs_A 261 FKESATYDDTAKFWCVAKL 279 (304)
T ss_dssp EESSCCGGGCEEEEEEEEE
T ss_pred eecccccccchheeeHHHH
Confidence 5567788999999999964
|
| >3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L | Back alignment and structure |
|---|
Probab=99.70 E-value=8.3e-17 Score=161.01 Aligned_cols=168 Identities=17% Similarity=0.199 Sum_probs=118.9
Q ss_pred ccCCCeEEEEEEEeecCCC-----CcEEEEEECC--EEc------------cCCCceEEEEeCcEEEEEEcccCcCCceE
Q psy2166 316 LKDGDSAHFECTLTPVNDP-----ELKVEWFHNG--KPI------------FHKNRVKMVSDFGFVVMDIAYVQSHDSGE 376 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p-----~~~v~W~~~g--~~l------------~~~~~~~~~~~~~~~~l~i~~v~~~d~G~ 376 (805)
+.+|++++|.|.+. +.+ .+.|.|+|++ ..+ ....++.+...++...|.|.+++.+|+|.
T Consensus 46 v~~G~~v~L~C~~~--~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 123 (252)
T 3bkj_L 46 VNLGEQASISCRSS--QSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAEDLGV 123 (252)
T ss_dssp ECTTSCEEEEEEES--SCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred EeCCCcEEEEEEcC--CCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCcccCEE
Confidence 78999999999997 665 5899999854 111 11346766666777889999999999999
Q ss_pred EEEEEEeCceeeE-EEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceE
Q psy2166 377 YVCRAWNKYGEDF-TRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSA 455 (805)
Q Consensus 377 Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (805)
|.|.+.|..+... ....|.|...
T Consensus 124 Y~C~~~~~~~~~~~~~~~l~V~~~-------------------------------------------------------- 147 (252)
T 3bkj_L 124 YYCFQASLVPLTFGAGTKLELKRA-------------------------------------------------------- 147 (252)
T ss_dssp EEEEECSBSSCEECCCEEEEECCC--------------------------------------------------------
T ss_pred EEEEEEcCCccEECCCEEEEEeCC--------------------------------------------------------
Confidence 9999988765322 2234554211
Q ss_pred EEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCC-cEEEEEE
Q psy2166 456 HFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPD-LVVEWFY 534 (805)
Q Consensus 456 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~-~~v~W~~ 534 (805)
..+|.+....+... +.+|+.++|.|.+.+. .|. +.|+|+|
T Consensus 148 -------------------------------------~~~P~v~~~~~~~~-~~~g~~v~L~C~~~g~-~p~~~~v~W~k 188 (252)
T 3bkj_L 148 -------------------------------------DAAPTVSIFPPSSE-QLTSGGASVVCFLNNF-YPKDINVKWKI 188 (252)
T ss_dssp -------------------------------------CBCCEEEEECCCHH-HHHHTEEEEEEEEEEE-BSSCCEEEEEE
T ss_pred -------------------------------------CcCcEEEEeCCChh-hcCCCcEEEEEEEeeE-eCCCcEEEEEE
Confidence 24566666544443 4579999999999963 444 4899999
Q ss_pred CCEEccCCCceE--E-EeeCC----EEEEEEccCCCCCCEEEEEEEEcCCcce
Q psy2166 535 NGKKLPHGHRYR--T-FHDFG----IVILDILYCYEENSGVYECRATNKYGSD 580 (805)
Q Consensus 535 ~g~~l~~~~~~~--~-~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~ 580 (805)
||+.+..+.... . ...++ .+.|.|..+..+|+|.|+|.|.|.....
T Consensus 189 ~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~ 241 (252)
T 3bkj_L 189 DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS 241 (252)
T ss_dssp TTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS
T ss_pred CCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCC
Confidence 999886541111 0 11111 2469999999999999999999987654
|
| >3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.3e-17 Score=163.29 Aligned_cols=205 Identities=16% Similarity=0.177 Sum_probs=114.4
Q ss_pred CCcccEEEEEEEEcCCeeEEEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCcEEEEEEC--CEE
Q psy2166 269 KIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHN--GKP 346 (805)
Q Consensus 269 ~~~d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~~v~W~~~--g~~ 346 (805)
...|.+.|.|.+.+..|.......+.|.. .+... .+.+|++++|.|.+. .+.+.+.|+|. +..
T Consensus 4 ~~~~~~~y~~~~~~~~g~~~~~~~~~v~~-----------~p~~v-~v~~G~~v~L~C~~~---~~~~~v~W~k~~~~~~ 68 (270)
T 3qib_D 4 ERADLIAYLKQATKGGGGSGGGGGMKVIQ-----------TPRYL-VKGQGQKAKMRCIPE---KGHPVVFWYQQNKNNE 68 (270)
T ss_dssp ------------------------CCCEE-----------ECSEE-EEETTSCEEEEEECC---TTCCEEEEEEECTTCC
T ss_pred hhhhHHHHHHHHhccCCccccccceeEEe-----------CCCeE-EEcCCCCEEEEEEec---CCCceEEEEEECCCCC
Confidence 56789999999999877655444433332 12222 278999999999984 36789999982 211
Q ss_pred c------------cCC---C-ceEEEE-eCcEEEEEEcccCcCCceEEEEEEEeCce----eeEEEEEEEEEeccccccc
Q psy2166 347 I------------FHK---N-RVKMVS-DFGFVVMDIAYVQSHDSGEYVCRAWNKYG----EDFTRATIKCFGKGGVYLD 405 (805)
Q Consensus 347 l------------~~~---~-~~~~~~-~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g----~~~~~~~l~V~~~~~~~~~ 405 (805)
. ... . ++.+.. ..+...|.|.+++.+|+|.|.|.+.+..+ .....+.|.|....
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~----- 143 (270)
T 3qib_D 69 FKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDL----- 143 (270)
T ss_dssp EEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCS-----
T ss_pred cEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEcccc-----
Confidence 0 000 0 444433 23456899999999999999999986421 22223455554210
Q ss_pred CCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCc
Q psy2166 406 SLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQP 485 (805)
Q Consensus 406 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 485 (805)
T Consensus 144 -------------------------------------------------------------------------------- 143 (270)
T 3qib_D 144 -------------------------------------------------------------------------------- 143 (270)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCc-EEEEEECCEEccCCCceEE-------E-eeCC---E
Q psy2166 486 VAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDL-VVEWFYNGKKLPHGHRYRT-------F-HDFG---I 553 (805)
Q Consensus 486 ~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~-~v~W~~~g~~l~~~~~~~~-------~-~~~~---~ 553 (805)
....+|.+....+....+.+|+.++|.|.+.+. .|.+ .++|+|||+.+..+.+... . .++. .
T Consensus 144 -----~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~-~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (270)
T 3qib_D 144 -----KNVFPPEVAVFEPSEAEISHTQKATLVCLATGF-YPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALS 217 (270)
T ss_dssp -----TTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEE-BSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEE
T ss_pred -----ccccCCceEEECCCccccccCCceEEEEEecce-eCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEE
Confidence 112456666544444346679999999999952 5555 8999999999965421110 0 1121 2
Q ss_pred EEEEEccCCCCC-CEEEEEEEEcCCcc
Q psy2166 554 VILDILYCYEEN-SGVYECRATNKYGS 579 (805)
Q Consensus 554 ~~L~i~~v~~~d-~G~Y~C~a~n~~g~ 579 (805)
+.|.|.....+| .|.|+|.|.|....
T Consensus 218 s~L~i~~~~~~d~~g~YtC~v~~~~l~ 244 (270)
T 3qib_D 218 SRLRVSATFWQNPRNHFRCQVQFYGLS 244 (270)
T ss_dssp EEEEEEHHHHHSTTCEEEEEEEECCBC
T ss_pred EEEEEcHHHhccCCCeEEEEEEecCCC
Confidence 357888877777 99999999987654
|
| >1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ... | Back alignment and structure |
|---|
Probab=99.70 E-value=6.8e-17 Score=158.58 Aligned_cols=93 Identities=8% Similarity=0.006 Sum_probs=58.9
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCC-CCe-EEEEEECCEEccC--CCCeEEEeeC---cEEEEEEcCCCCCCCE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGD-QTM-TVEFLYNGKPIEA--SHRIRTVHAF---GMVVLEILGTKIEDTG 763 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~-p~~-~v~W~~~g~~l~~--~~~~~~~~~~---~~~~L~i~~v~~~d~G 763 (805)
+|.+....... .+.+|+.++|.|.+. |. |.+ .|+|+++|..+.. ...+ ...+ ....|.|..+..+| |
T Consensus 121 ~P~v~~~~~~~-~~~~g~~v~L~C~~~--g~~P~p~~v~W~~~g~~~~~~~~~~~--~~~g~~~~~s~L~i~~~~~~~-g 194 (227)
T 1mju_H 121 APSVYPLAPVC-GDTSGSSVTLGCLVK--GYFPEPVTLTWNSGSLSSGVHTFPAV--LQSDLYTLSSSVTVTSSTWPS-Q 194 (227)
T ss_dssp CCEEEEECCCC-------CEEEEEEEE--EEBSSCCEEEEGGGTBCTTEEECCCE--EETTEEEEEEEEEECTTTTTT-S
T ss_pred CCEEEEecCCc-cccCCCcEEEEEEee--cEeCCCeEEEEecCCCcCCcEECCce--ecCCeEEEEEEEEEchhhcCC-C
Confidence 45444433233 567899999999998 64 766 9999999986531 1111 1111 12469999999888 9
Q ss_pred EEEEEEEcCCccEEEEEEEEEEEeCC
Q psy2166 764 VYTCRATNKWGQAEISVNLECVVWSP 789 (805)
Q Consensus 764 ~Y~C~a~N~~G~~~~~~~l~V~~~~~ 789 (805)
.|+|.|.|..+.......+.+..+|+
T Consensus 195 ~Y~C~a~n~~~~~~~~~~~~~~~~p~ 220 (227)
T 1mju_H 195 SITCNVAHPASSTKVDKKIEPRGPTI 220 (227)
T ss_dssp CCEEEEEEGGGTEEEEEECCCCCC--
T ss_pred eEEEEEEECCCCcceEEEeCCCCCCC
Confidence 99999999988877777766554433
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=5.2e-17 Score=158.19 Aligned_cols=169 Identities=19% Similarity=0.246 Sum_probs=122.5
Q ss_pred CCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCC--CceEEEeeCCEEEEEEccCCCCCCEEE
Q psy2166 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG--HRYRTFHDFGIVILDILYCYEENSGVY 569 (805)
Q Consensus 492 ~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~--~~~~~~~~~~~~~L~i~~v~~~d~G~Y 569 (805)
...+|.|. .+.. ..+.+|+.++|.|.+. |.|.|.++|+|+|..+..+ .++.+...+....|.|.++..+|+|.|
T Consensus 16 ~~~~P~~~-~p~~-~~~~~G~~v~l~C~~~--g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 91 (215)
T 3mtr_A 16 HMYAPKLQ-GPVA-VYTWEGNQVNITCEVF--AYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNY 91 (215)
T ss_dssp CCEEEEEE-CCSE-EEECTTCCEEEEEEEE--EESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEE
T ss_pred eecCCccc-CCce-EEEECCCCEEEEEEEe--ecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEE
Confidence 34677773 3344 4589999999999999 6788899999999999765 567777767778999999999999999
Q ss_pred EEEEEcCCcceEEEEEEEEeeeeee-------------eecC--C-------CC--eEEEEECCEEccCCCceEEEeeCC
Q psy2166 570 ECRATNKYGSDVTKASLKCVSKTNL-------------ILES--Q-------LP--EVEWFYNGKKLPHGHRYRTFHDFG 625 (805)
Q Consensus 570 ~C~a~n~~g~~~~~~~l~V~~~~~~-------------~~~~--~-------~p--~v~W~~~g~~l~~~~~~~~~~~~~ 625 (805)
+|.|.|..|.....+.|.|...|.. .+.+ | .. .+.|.+++........+.+.....
T Consensus 92 ~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~ 171 (215)
T 3mtr_A 92 NCTAVNRIGQESLEFILVQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASM 171 (215)
T ss_dssp EEEEECSSCEEEEEEEEEECCCCCCCEEEEEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHH
T ss_pred EEEEEECCCceEEEEEEEECCCCCCCcceEEEEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccccc
Confidence 9999999999999999988765431 1111 1 11 255555543211100000000011
Q ss_pred EEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeec
Q psy2166 626 IVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSK 664 (805)
Q Consensus 626 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 664 (805)
...|.|.++...+.|.|+|.|.|..|....+..+.|..+
T Consensus 172 ~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~ 210 (215)
T 3mtr_A 172 EGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 210 (215)
T ss_dssp HTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECC
T ss_pred cccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEec
Confidence 135999999999999999999999999888777777653
|
| >2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=153.63 Aligned_cols=171 Identities=15% Similarity=0.154 Sum_probs=111.6
Q ss_pred ccCCCeEEEEEEEeecC-CC-CcEEEEEECCEEccCCCc-eEEEEeC----cEEEEEEcccCcCCceEEEEEEEeCceee
Q psy2166 316 LKDGDSAHFECTLTPVN-DP-ELKVEWFHNGKPIFHKNR-VKMVSDF----GFVVMDIAYVQSHDSGEYVCRAWNKYGED 388 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~-~p-~~~v~W~~~g~~l~~~~~-~~~~~~~----~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~ 388 (805)
+.+|++++|.|.+.+.. .| .+.|.|+|++..+..... ......+ ....|.|.++..+|+|.|+|.|.|..+..
T Consensus 15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~ 94 (207)
T 2vol_A 15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA 94 (207)
T ss_dssp HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence 78999999999998422 13 459999999977642210 0000011 12369999999999999999999988753
Q ss_pred EEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCC
Q psy2166 389 FTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPD 468 (805)
Q Consensus 389 ~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (805)
.....+.+
T Consensus 95 ~~~~~v~~------------------------------------------------------------------------ 102 (207)
T 2vol_A 95 PIEKTISK------------------------------------------------------------------------ 102 (207)
T ss_dssp CEEEEECC------------------------------------------------------------------------
T ss_pred ceEEEecc------------------------------------------------------------------------
Confidence 22222211
Q ss_pred ceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc--eE
Q psy2166 469 LVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR--YR 546 (805)
Q Consensus 469 ~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~--~~ 546 (805)
...+..+|.+........ ..+|+.++|.|.+.+...+.+.|+|+|||+.+..... ..
T Consensus 103 --------------------~~~~~~~P~v~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~ 161 (207)
T 2vol_A 103 --------------------TKGRPKAPQVYTLPPPKE-QMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPI 161 (207)
T ss_dssp --------------------CCCCCBCCEEEEECCCTG-GGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCE
T ss_pred --------------------CCCCCcCCeEEEeCCCHH-HhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCce
Confidence 011246777766554443 3469999999999963233359999999998854321 11
Q ss_pred EEeeCC---EEEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 547 TFHDFG---IVILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 547 ~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
...++. .+.|.|.....+|.|.|+|.|.|....
T Consensus 162 ~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~ 197 (207)
T 2vol_A 162 MDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 197 (207)
T ss_dssp ECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred ECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence 122222 224677766667899999999998654
|
| >1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-16 Score=155.46 Aligned_cols=165 Identities=15% Similarity=0.200 Sum_probs=116.7
Q ss_pred ccCCCceEEEEEEEeeCCCC----CeEEEEEECC--EEc---c---------CCCcEEEEEEcCeEEEEEcCCCCcccEE
Q psy2166 214 NLSEGEIAHFEASLIPVGDQ----TMTVEFLYNG--KPI---E---------ASHRIRTVHAFGMVVLEILGTKIEDTGV 275 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~p----~~~i~W~k~g--~~l---~---------~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 275 (805)
.+.+|+.++|.|.+ .+.| .+.+.|||+. ..+ . ...++......+...|.|.+++.+|+|.
T Consensus 12 ~v~~G~~v~L~C~~--~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 89 (240)
T 1moe_A 12 AVSLGQRATMSCRA--GESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVAT 89 (240)
T ss_dssp EECTTSCEEEEEEE--SSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred EecCCCCEEEEEeC--CCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhCEE
Confidence 48899999999998 6676 7899999952 211 0 1346665555667799999999999999
Q ss_pred EEEEEEcCCee-EEEEEEEEEeccCCCCCCe-EEecCCCcccccCCCeEEEEEEEeecCCC--CcEEEEEEC--CEEcc-
Q psy2166 276 YTCRATNKWGQ-AEISVNLECVDKSKGQPPK-FTSHIKSLEGLKDGDSAHFECTLTPVNDP--ELKVEWFHN--GKPIF- 348 (805)
Q Consensus 276 Y~C~~~n~~g~-~~~~~~l~v~~~~~~~~p~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~p--~~~v~W~~~--g~~l~- 348 (805)
|+|.+.|..+. ......|.|...+...++. +...+... .+.+|+.++|.|.+. +.| .+.+.|+|+ +..+.
T Consensus 90 Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~-~v~~G~~v~L~C~~~--g~p~~~~~v~W~k~~~g~~~~~ 166 (240)
T 1moe_A 90 YYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAE-LVEPGASVKLSCTAS--GFNIKDTYMHWVKQRPEQGLEW 166 (240)
T ss_dssp EEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCE-EECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCCEE
T ss_pred EEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCce-EEeCCCcEEEEEEEc--CccCCCCEEEEEEECCCCCcEE
Confidence 99999997554 3344566665433211232 33333333 388999999999998 555 468999995 32221
Q ss_pred ----------------CCCceEEEEe--CcEEEEEEcccCcCCceEEEEEEEe
Q psy2166 349 ----------------HKNRVKMVSD--FGFVVMDIAYVQSHDSGEYVCRAWN 383 (805)
Q Consensus 349 ----------------~~~~~~~~~~--~~~~~l~i~~v~~~d~G~Y~C~a~n 383 (805)
...++.+..+ ....+|.|.++..+|+|.|.|.|.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~ 219 (240)
T 1moe_A 167 IGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG 219 (240)
T ss_dssp EEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred EEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence 1235555543 4556899999999999999999984
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-16 Score=149.53 Aligned_cols=155 Identities=13% Similarity=0.152 Sum_probs=109.4
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEEC-CEecC------------CC--CceEEEecCcEEEEEEcccccCCCeEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN-GKPLE------------LG--SRFKTTADFGFVTLDLTEVYDRDQGIY 139 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~-g~~i~------------~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y 139 (805)
.+.+.+|++|+|.|.+.. ..+.+.|.|+|+ +..+. .. +|+.+...+ .+|.|.+++.+|+|.|
T Consensus 8 ~v~v~~G~~vtL~c~~~~-~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~--~sL~I~~v~~~D~G~Y 84 (180)
T 2dru_A 8 NVNAITGSNVTLTILKHP-LASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTN--GALRIYNVSKEDRGDY 84 (180)
T ss_dssp EEEEETTSCEEECCCSSC-CCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTT--CCEEECSCCGGGCEEE
T ss_pred eEEEEeCCCEEEeCCCCC-CCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCC--ccEEEcCCCHHHCeEE
Confidence 568899999999999852 345789999994 32221 11 466663222 3799999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCc
Q psy2166 140 TCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGE 219 (805)
Q Consensus 140 ~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~ 219 (805)
+|.+.+.. .......|.|..+. ..|.+.. .+.
T Consensus 85 ~C~v~~~~-~~~~~~~L~V~~~~--------------------------------------~~P~i~~---------~~~ 116 (180)
T 2dru_A 85 YMRMLHET-EDQWKITMEVYEMV--------------------------------------SKPMIYW---------ECS 116 (180)
T ss_dssp EEEEESSS-EEEEEEEEEEECCC--------------------------------------CCCEEEE---------EGG
T ss_pred EEEEEcCC-eEEEEEEEEEECCC--------------------------------------CCCEEEe---------cCC
Confidence 99998776 55566677776432 2244332 235
Q ss_pred eEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEE
Q psy2166 220 IAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293 (805)
Q Consensus 220 ~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l 293 (805)
.++|.|.+. .+ |.+.+.|+++|..+.. ....+|.+.. .+|+|.|+|.|.|..+.......+
T Consensus 117 ~v~L~C~~~-~g-p~p~i~W~~~~~~l~~---------~~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~i 177 (180)
T 2dru_A 117 NATLTCEVL-EG-TDVELKLYQGKEHLRS---------LRQKTMSYQW--TNLRAPFKCKAVNRVSQESEMEVV 177 (180)
T ss_dssp GTEEEEECS-SC-TTCEEEEEETTEEEEE---------ESSSEEEEEC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred CEEEEEEeC-CC-CCCEEEEEECCeECcC---------CCCCEEEEEE--hhcCccEEEEEecCcCccccceeE
Confidence 689999873 24 8899999999998751 1123455533 789999999999998877665543
|
| >2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-16 Score=154.96 Aligned_cols=172 Identities=15% Similarity=0.161 Sum_probs=118.3
Q ss_pred CCceecCCCcEEEEEEEecCCCC--CceEEEEECC--Ee---c--------------CCCCceEEEec--CcEEEEEEcc
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDP--NLKIEWIFNG--KP---L--------------ELGSRFKTTAD--FGFVTLDLTE 130 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p--~~~v~W~k~g--~~---i--------------~~~~~~~~~~~--~~~~~L~I~~ 130 (805)
+.+.+.+|++++|.|.+. +.+ .+.|.|+|.. .. + ...+|+.+..+ ++..+|+|.+
T Consensus 8 ~~~~v~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (220)
T 2fbj_H 8 GGGLVQPGGSLKLSCAAS--GFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSK 85 (220)
T ss_dssp CCEEECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECS
T ss_pred CCeEecCCCcEEEEEEec--CccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECC
Confidence 357899999999999998 333 5789999842 21 1 02357877764 4577999999
Q ss_pred cccCCCeEEEEEEEeCCee---EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceec
Q psy2166 131 VYDRDQGIYTCRAWNLAGE---TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTS 207 (805)
Q Consensus 131 ~~~~D~G~Y~C~a~n~~g~---~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 207 (805)
++.+|+|.|.|.+.+..+. ....+.|.|...+ ..+|.+..
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~-------------------------------------~~~P~v~~ 128 (220)
T 2fbj_H 86 VRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAES-------------------------------------ARNPTIYP 128 (220)
T ss_dssp CCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSC-------------------------------------CBCCEEEE
T ss_pred CChhhCEEEEEEEeccccccceecCCEEEEecCCC-------------------------------------CCCCEEEE
Confidence 9999999999999987542 1223466665321 13455544
Q ss_pred ccccccccCCCceEEEEEEEeeCCCCC--eEEEEEECCEEccC-CCcEEEEEEcC----eEEEEEcCCCCcccEEEEEEE
Q psy2166 208 EFQHLSNLSEGEIAHFEASLIPVGDQT--MTVEFLYNGKPIEA-SHRIRTVHAFG----MVVLEILGTKIEDTGVYTCRA 280 (805)
Q Consensus 208 ~~~~~~~v~~g~~~~l~C~~~~~~~p~--~~i~W~k~g~~l~~-~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~ 280 (805)
.. .. .+.+|+.++|.|.+.. ..|. +.+.|+++|..+.. .... ....++ .+.|.|.....+|+|.|+|.|
T Consensus 129 ~~-~~-~~~~g~~v~L~C~~~g-~~P~~~~~v~W~~~~~~~~~~~~~~-~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v 204 (220)
T 2fbj_H 129 LT-LP-PALSSDPVIIGCLIHD-YFPSGTMNVTWGKSGKDITTVNFPP-ALASGGRYTMSNQLTLPAVECPEGESVKCSV 204 (220)
T ss_dssp EC-CC-SSSCCSSEEEEEEEEE-EBSCCCEEEEESCCCSSCEEEECCC-EECSSSCEEEEEEEEECGGGSCTTCEEEEEE
T ss_pred ee-cc-cccCCCcEEEEEEEEe-EECCCcEEEEEecCCEecceEecCc-eECCCCCEEEEEEEEECHHHcCCCCeEEEEE
Confidence 33 21 3678999999999852 3365 89999999976521 0000 011122 236899988889999999999
Q ss_pred EcCCeeEE
Q psy2166 281 TNKWGQAE 288 (805)
Q Consensus 281 ~n~~g~~~ 288 (805)
.|..+...
T Consensus 205 ~n~~~~~~ 212 (220)
T 2fbj_H 205 QHDSNPVQ 212 (220)
T ss_dssp EETTSCCE
T ss_pred EcCCCceE
Confidence 99887654
|
| >1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-17 Score=159.36 Aligned_cols=184 Identities=13% Similarity=0.147 Sum_probs=104.5
Q ss_pred ecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEEEEEEE
Q psy2166 78 LGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157 (805)
Q Consensus 78 v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~ 157 (805)
+.+|+.++|.|.+ |.+.|.|+|||..+... . ....+|.|.+++.+|+|.|+|.+.+... ....|.
T Consensus 15 ~~~G~~v~L~C~~-----p~~~i~W~k~g~~l~~~-----~--~~~~~L~i~~v~~~DsG~Y~C~~~~~~s---~~~~v~ 79 (204)
T 1sy6_A 15 YQEDGSVLLTCDA-----EAKNITWFKDGKMIGFL-----T--EDKKKWNLGSNAKDPRGMYQCKGSQNKS---KPLQVY 79 (204)
T ss_dssp CCSSSEEEEEECS-----CSSEEEEEETTEEEEEE-----E--SSCCCEEEEEGGGCCEEEEEEESSSSCC---CCEEEE
T ss_pred ecCCCeEEEEEcC-----CCCEEEEEECCEECCCC-----C--CCCCeEEeCCCCcCCCEEEEEEecCCCC---eeEEEE
Confidence 4689999999986 56799999999887532 0 1122799999999999999999754321 123344
Q ss_pred EeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCCCeEE
Q psy2166 158 CSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTV 237 (805)
Q Consensus 158 V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i 237 (805)
|....... ............ ...... .. ......++.+...+. . ...+|+.++|.|. +.|.+.+
T Consensus 80 v~~~~~~~--~~~~~~~~~~~~---~~~~~~--~~---~~~~~~~~~~~~~p~-~-v~~~G~~v~L~C~----g~p~p~i 143 (204)
T 1sy6_A 80 YRMGSADD--AKKDAAKKDDAK---KDDAKK--DG---SDGNEEMGGITQTPY-K-VSISGTTVILTCP----QYPGSEI 143 (204)
T ss_dssp EEC----------------------------------------------CCCC-E-EEEETTEEEEECS----CCCSSCE
T ss_pred EEEecccc--cccccccccccc---cccccc--cc---ccccccccceecCCc-e-eeecCCcEEEEcC----CCCCCce
Confidence 33100000 000000000000 000000 00 000001122222111 1 1238999999995 6778899
Q ss_pred EEEECCEEccCCC-cEEEEEEcCeEEEEEcCC-CCcccEEEEEEEEcCCeeE-EEEEEEE
Q psy2166 238 EFLYNGKPIEASH-RIRTVHAFGMVVLEILGT-KIEDTGVYTCRATNKWGQA-EISVNLE 294 (805)
Q Consensus 238 ~W~k~g~~l~~~~-~~~~~~~~~~~~L~i~~~-~~~d~G~Y~C~~~n~~g~~-~~~~~l~ 294 (805)
.|+|+|..+.... ...+.... ..|.|.++ +.+|+|.|+|.|.|..|.. +..+.|.
T Consensus 144 ~W~k~~~~l~~~~~~~~~~~~~--~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~ 201 (204)
T 1sy6_A 144 LWQHNDKNIGGDEDDKNIGSDE--DHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLR 201 (204)
T ss_dssp EEEETTEEESCCTTCTTEEEET--TEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEE
T ss_pred EEEECCEECCCccCCceEecCC--CEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEE
Confidence 9999999886532 11122223 37999999 9999999999999998852 3444443
|
| >2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C | Back alignment and structure |
|---|
Probab=99.70 E-value=2.9e-16 Score=157.92 Aligned_cols=184 Identities=13% Similarity=0.170 Sum_probs=117.2
Q ss_pred CCCCceecCCCcEEEEEEEecCCCC------CceEEEEEC--CEec------------CCCCceEEEecCcEEEEEEccc
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDP------NLKIEWIFN--GKPL------------ELGSRFKTTADFGFVTLDLTEV 131 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p------~~~v~W~k~--g~~i------------~~~~~~~~~~~~~~~~L~I~~~ 131 (805)
.+..+.+.+|+.++|.|.+. +.+ .+.|.|+|+ |..+ ....|+.+..++...+|+|.++
T Consensus 11 ~p~~v~v~~G~~v~L~C~~~--~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v 88 (264)
T 2gjj_A 11 TPSSLPVSVGEKVTMTCKSS--QTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLTIGSV 88 (264)
T ss_dssp ECSEEEEETTCCEEEEEEES--SCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC
T ss_pred cCCeEEecCCCcEEEEeEcC--CcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEEECCC
Confidence 34467899999999999998 455 678999995 3221 1246888776667789999999
Q ss_pred ccCCCeEEEEEEEeCCeeE-EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCcee-ccc
Q psy2166 132 YDRDQGIYTCRAWNLAGET-FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFT-SEF 209 (805)
Q Consensus 132 ~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~ 209 (805)
+.+|+|.|.|.+.+..+.. ...+.|.|...+.... +.+. ... .....+|.+. ..+
T Consensus 89 ~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~----~~~~------------------~~~-~~~~~~~~~~~~~~ 145 (264)
T 2gjj_A 89 KAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSG----GGGS------------------GGG-GSGGGGSEVQLQQS 145 (264)
T ss_dssp CGGGCEEEEEEECSSSSCEECCCEEEEEECC------------------------------------------CCEEEEC
T ss_pred CHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccc----cccc------------------ccc-ccccccCcEEEeCC
Confidence 9999999999999875422 2235677765421000 0000 000 0000012221 122
Q ss_pred ccccccCCCceEEEEEEEeeCCCC--CeEEEEEECC--EE---cc----C----------CCcEEEEEE--cCeEEEEEc
Q psy2166 210 QHLSNLSEGEIAHFEASLIPVGDQ--TMTVEFLYNG--KP---IE----A----------SHRIRTVHA--FGMVVLEIL 266 (805)
Q Consensus 210 ~~~~~v~~g~~~~l~C~~~~~~~p--~~~i~W~k~g--~~---l~----~----------~~~~~~~~~--~~~~~L~i~ 266 (805)
+.. .+.+|++++|.|.+. +.+ .+.+.|||+. .. +. . ..++..... .....|.|.
T Consensus 146 ~~~-~v~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 222 (264)
T 2gjj_A 146 GPE-VVKTGASVKISCKAS--GYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLN 222 (264)
T ss_dssp CCE-EECTTCCEEEEEEEE--SSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred CCE-EEcCCCcEEEEEEEe--CCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEEC
Confidence 222 478999999999984 444 3799999963 21 10 0 234433322 246789999
Q ss_pred CCCCcccEEEEEEEEcC
Q psy2166 267 GTKIEDTGVYTCRATNK 283 (805)
Q Consensus 267 ~~~~~d~G~Y~C~~~n~ 283 (805)
+++.+|+|.|.|.+.|.
T Consensus 223 ~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 223 SLTSEDSADYYCVRSGN 239 (264)
T ss_dssp SCCGGGCEEEEEEEECS
T ss_pred cCCcccCEEEEEEEecC
Confidence 99999999999999985
|
| >2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=155.29 Aligned_cols=170 Identities=16% Similarity=0.294 Sum_probs=112.9
Q ss_pred cccCCCeEEEEEEEeec-----CCCCcEEEEEECCEE------cc-----------CCCceEEEEe--CcEEEEEEcccC
Q psy2166 315 GLKDGDSAHFECTLTPV-----NDPELKVEWFHNGKP------IF-----------HKNRVKMVSD--FGFVVMDIAYVQ 370 (805)
Q Consensus 315 ~~~~g~~~~l~C~~~~~-----~~p~~~v~W~~~g~~------l~-----------~~~~~~~~~~--~~~~~l~i~~v~ 370 (805)
.+.+|+.++|.|.+.+. ..+.+.+.|+|++.. +. ...++.+..+ .+...|.|.+++
T Consensus 11 ~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~ 90 (214)
T 2zg1_A 11 TVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDAR 90 (214)
T ss_dssp EEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEECSCC
T ss_pred EEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEEccCC
Confidence 37899999999999721 125789999998752 11 1234544332 234569999999
Q ss_pred cCCceEEEEEEEeCceeeE----EEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecce
Q psy2166 371 SHDSGEYVCRAWNKYGEDF----TRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDV 446 (805)
Q Consensus 371 ~~d~G~Y~C~a~n~~g~~~----~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (805)
.+|+|.|.|.+.+..+... ..+.|.|...
T Consensus 91 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~----------------------------------------------- 123 (214)
T 2zg1_A 91 MEDTGSYFFRVERGRDVKYSYQQNKLNLEVTAL----------------------------------------------- 123 (214)
T ss_dssp GGGCEEEEEEEEETTTEEEECCSSCEEEEEECC-----------------------------------------------
T ss_pred HhhCceEEEEEEcCCCceeeecCCceEEEEecC-----------------------------------------------
Confidence 9999999999998763322 3456666432
Q ss_pred eeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeC--C
Q psy2166 447 TQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPV--T 524 (805)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~--g 524 (805)
..+|.+..+ . .+.+|+.++|.|.+.+. +
T Consensus 124 ----------------------------------------------~~~p~i~~~--~--~~~~G~~v~L~C~~~~~~~~ 153 (214)
T 2zg1_A 124 ----------------------------------------------IEKPDIHFL--E--PLESGRPTRLSCSLPGSCEA 153 (214)
T ss_dssp ----------------------------------------------CCCCEEC----C--CCCTTCCEEEEEECTTCCSC
T ss_pred ----------------------------------------------CCCCceecC--c--cccCCCeEEEEEEeccCCCC
Confidence 123444321 1 16799999999999732 2
Q ss_pred CCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEE
Q psy2166 525 DPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587 (805)
Q Consensus 525 ~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 587 (805)
.|.|.++|+++|..+... +. .....|.|..+..+|+|.|+|.|.|..+.......+.
T Consensus 154 ~p~p~v~W~~~~~~~~~~-~~-----~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~ 210 (214)
T 2zg1_A 154 GPPLTFSWTGNALSPLDP-ET-----TRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQ 210 (214)
T ss_dssp SSCCEEEEESSTTSSSCS-SC-----CCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEE
T ss_pred CCCceEEEeCCCCccCCC-Cc-----eeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEE
Confidence 488999999998654322 11 1233699999999999999999999876544444443
|
| >1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-15 Score=149.60 Aligned_cols=179 Identities=14% Similarity=0.164 Sum_probs=118.6
Q ss_pred CCceecCCCcEEEEEEEecCCCCCceEEEEECC--Ee---c--------------CCCCceEEEec--CcEEEEEEcccc
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG--KP---L--------------ELGSRFKTTAD--FGFVTLDLTEVY 132 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g--~~---i--------------~~~~~~~~~~~--~~~~~L~I~~~~ 132 (805)
+.+.+.+|+.|+|.|.+.+.....+.|.|+|+. .. + ...+|+.+..+ .+..+|.|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 87 (223)
T 1dee_B 8 GGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLR 87 (223)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred CCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCC
Confidence 367899999999999998321124789999842 11 1 02357777654 357799999999
Q ss_pred cCCCeEEEEEEEeCCe----e--EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCcee
Q psy2166 133 DRDQGIYTCRAWNLAG----E--TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFT 206 (805)
Q Consensus 133 ~~D~G~Y~C~a~n~~g----~--~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 206 (805)
.+|+|.|+|.+.+..| . ....+.|.|.... ..+|.+.
T Consensus 88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~-------------------------------------~~~P~i~ 130 (223)
T 1dee_B 88 AEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGS-------------------------------------ASAPTLF 130 (223)
T ss_dssp GGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSC-------------------------------------CBCCEEE
T ss_pred HHHCEEEEEEEeccccCcccceeecCcEEEEEccCC-------------------------------------CCCCEEE
Confidence 9999999999998642 1 1123466665311 1234444
Q ss_pred cccccccccCCCceEEEEEEEeeCCCCCe-EEEEEE-CCEEccCCCcEEEEEEcC----eEEEEEcCCCC--cccEEEEE
Q psy2166 207 SEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLY-NGKPIEASHRIRTVHAFG----MVVLEILGTKI--EDTGVYTC 278 (805)
Q Consensus 207 ~~~~~~~~v~~g~~~~l~C~~~~~~~p~~-~i~W~k-~g~~l~~~~~~~~~~~~~----~~~L~i~~~~~--~d~G~Y~C 278 (805)
...+.. .+.+|+.++|.|.+. ...|.+ .+.|++ +|..+...........++ .+.|.|..... +|.|.|+|
T Consensus 131 ~~~~~~-~~~~g~~v~L~C~~~-g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C 208 (223)
T 1dee_B 131 PLVSCE-NSNPSSTVAVGCLAQ-DFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVC 208 (223)
T ss_dssp EEECTT-CCCSSSEEEEEEEEE-EEBSSCCEEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEE
T ss_pred EecCCc-ccCCCCcEEEEEEEE-EEeCCCeEEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEE
Confidence 322222 257899999999984 233666 999999 998875410000000112 24688887776 88999999
Q ss_pred EEEcCCeeEEEEE
Q psy2166 279 RATNKWGQAEISV 291 (805)
Q Consensus 279 ~~~n~~g~~~~~~ 291 (805)
.|.|..+.....+
T Consensus 209 ~v~n~~~~~~~~~ 221 (223)
T 1dee_B 209 KVQHPNGNKEKDV 221 (223)
T ss_dssp EEECTTCCEEEEE
T ss_pred EEEeCCCCCcccc
Confidence 9999988765543
|
| >2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-16 Score=154.11 Aligned_cols=83 Identities=10% Similarity=0.037 Sum_probs=58.8
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCC-CC--eEEEEEECCEEccC-CCCeEEEeeCc---EEEEEEcCCCCCCCE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGD-QT--MTVEFLYNGKPIEA-SHRIRTVHAFG---MVVLEILGTKIEDTG 763 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~-p~--~~v~W~~~g~~l~~-~~~~~~~~~~~---~~~L~i~~v~~~d~G 763 (805)
+|.+...+ .. .+.+|+.++|.|.+. |. |. +.|.|+++|..+.. ........++. ...|.|.++..+|+|
T Consensus 123 ~P~v~~~~-~~-~~~~g~~v~L~C~~~--g~~P~~~~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g 198 (220)
T 2fbj_H 123 NPTIYPLT-LP-PALSSDPVIIGCLIH--DYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGE 198 (220)
T ss_dssp CCEEEEEC-CC-SSSCCSSEEEEEEEE--EEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTC
T ss_pred CCEEEEee-cc-cccCCCcEEEEEEEE--eEECCCcEEEEEecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCC
Confidence 45555544 33 578999999999998 55 76 89999999976521 11111111121 125999999999999
Q ss_pred EEEEEEEcCCccEE
Q psy2166 764 VYTCRATNKWGQAE 777 (805)
Q Consensus 764 ~Y~C~a~N~~G~~~ 777 (805)
.|+|.|.|..|..+
T Consensus 199 ~ytC~v~n~~~~~~ 212 (220)
T 2fbj_H 199 SVKCSVQHDSNPVQ 212 (220)
T ss_dssp EEEEEEEETTSCCE
T ss_pred eEEEEEEcCCCceE
Confidence 99999999999765
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B | Back alignment and structure |
|---|
Probab=99.69 E-value=7.4e-17 Score=150.00 Aligned_cols=152 Identities=11% Similarity=0.125 Sum_probs=109.0
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecCC------------CCceEEEecCcEEEEEEcccccCCCeEEEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL------------GSRFKTTADFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~------------~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
.+.+.+|+.|+|.|.+. .|.+.|.|+|++..+.. .+|+.+...++ +|.|.+++.+|+|.|.|.
T Consensus 4 ~v~~~~G~~VtL~c~~~---~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~--sL~I~~v~~~DsG~Y~C~ 78 (171)
T 1ccz_A 4 QIYGVVYGNVTFHVPSN---VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG--SLTIYNLTSSDEDEYEME 78 (171)
T ss_dssp EEEEETTCCEEECCCCS---SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTC--CEEECSCCGGGCEEEEEE
T ss_pred EEEEEcCCCEEEcCCCC---CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCC--eEEECCCChhhCceEEEE
Confidence 35788999999999885 47889999998865421 22444432223 799999999999999999
Q ss_pred EEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEE
Q psy2166 143 AWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAH 222 (805)
Q Consensus 143 a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~ 222 (805)
+.|..| .....|.|..+. ..|.+..... . ..
T Consensus 79 ~~n~~~--~~~~~L~V~~~~--------------------------------------~~p~i~~~~~------~---~~ 109 (171)
T 1ccz_A 79 SPNITD--TMKFFLYVLEMV--------------------------------------SKPMIYWECS------N---AT 109 (171)
T ss_dssp CTTCCS--CEEEEEEEECCC--------------------------------------CCCEEEEETT------T---TE
T ss_pred EeCCCC--cEEEEEEEECcC--------------------------------------CCCEEEEecC------C---cE
Confidence 998877 556677776432 2244432211 1 27
Q ss_pred EEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEE
Q psy2166 223 FEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293 (805)
Q Consensus 223 l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l 293 (805)
|.|.+ .+.|.|.+.|+++|..+..... ..|.+. ...|+|.|+|.|.|..+..+..+.+
T Consensus 110 L~C~~--~~~p~p~i~W~~~~~~l~~~~~---------~~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l 167 (171)
T 1ccz_A 110 LTCEV--LEGTDVELKLYQGKEHLRSLRQ---------KTMSYQ--WTNLRAPFKCKAVNRVSQESEMEVV 167 (171)
T ss_dssp EEEEC--SSCSSCEEEEEETTEEEEEESS---------SEEEEE--CSCCSSCEEEEEEETTEEEEEEECC
T ss_pred EEEEe--CCCCCcEEEEEECCEECcCCcc---------eEEEEe--ccCCCceEEEEEEcccCcccceeEE
Confidence 99988 6778899999999998764322 124443 3778999999999999887766554
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-16 Score=136.33 Aligned_cols=97 Identities=25% Similarity=0.302 Sum_probs=89.3
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
.||.|...+.+. .+.+|+.+.|.|.+. |.|.|.|+|+|+|..+..+.++.+....+...|.|.++..+|+|.|+|.|
T Consensus 6 ~pp~i~~~~~~~-~v~~G~~v~l~C~~~--g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 82 (114)
T 2cqv_A 6 SGPQIIQFPEDQ-KVRAGESVELFGKVT--GTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLV 82 (114)
T ss_dssp CCCEESCCCCSE-EEETTCCEEEEEEEE--SSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEE
T ss_pred CCCEEEeCCCCe-EEeCCCeEEEEEEEE--cCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEE
Confidence 689999988888 999999999999999 99999999999999999888988887777789999999999999999999
Q ss_pred EcCCccEEEEEEEEEEEeCC
Q psy2166 770 TNKWGQAEISVNLECVVWSP 789 (805)
Q Consensus 770 ~N~~G~~~~~~~l~V~~~~~ 789 (805)
.|..|..+..+.|.|...|.
T Consensus 83 ~N~~g~~~~~~~l~V~~~p~ 102 (114)
T 2cqv_A 83 ENKLGSRQAQVNLTVVDKPD 102 (114)
T ss_dssp ECSSCEEECCEEEEEECSCS
T ss_pred EECCCcEEEEEEEEEECCCC
Confidence 99999999999999976543
|
| >1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H* | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-16 Score=153.82 Aligned_cols=174 Identities=14% Similarity=0.173 Sum_probs=111.7
Q ss_pred cccCCCeEEEEEEEeeCCCC--CcEEEEEECC--EE---c---cC-------------CCceEEEee--CCEEEEEEccC
Q psy2166 507 QLKEGQSAHFEARLTPVTDP--DLVVEWFYNG--KK---L---PH-------------GHRYRTFHD--FGIVILDILYC 561 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~p--~~~v~W~~~g--~~---l---~~-------------~~~~~~~~~--~~~~~L~i~~v 561 (805)
.+.+|++++|.|.+. +.+ .+.+.|+|++ .. + .. ..|+.+..+ .+...|.|.++
T Consensus 11 ~~~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 88 (220)
T 1pz5_B 11 LVQPGGSMKLSCVAS--GFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNNL 88 (220)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred EEcCCCeEEEEEEEc--CCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEccC
Confidence 488999999999998 444 6899999853 11 1 00 246665443 34567899988
Q ss_pred CCCCCEEEEEEEEcCCcceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEE
Q psy2166 562 YEENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 641 (805)
Q Consensus 562 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 641 (805)
+.+|+|.|.|.+.|..|..... .
T Consensus 89 ~~~D~G~Y~C~~~~~~~~~~~~--------~------------------------------------------------- 111 (220)
T 1pz5_B 89 RAEDTGIYYCTRGGAVGAMDYW--------G------------------------------------------------- 111 (220)
T ss_dssp CGGGCEEEEEEEECTTSSEEEE--------C-------------------------------------------------
T ss_pred CHHHCEEEEEEEecCCcccceE--------C-------------------------------------------------
Confidence 8889999999887754321000 0
Q ss_pred EEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCC
Q psy2166 642 YECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGD 721 (805)
Q Consensus 642 Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~ 721 (805)
..+.|.|...+ ..+|.+...+... .+.+|+.++|.|.+. |.
T Consensus 112 -------------~~~~l~V~~~~-----------------------~~~P~i~~~~~~~-~~~~g~~v~L~C~~~--g~ 152 (220)
T 1pz5_B 112 -------------QGTSVTVSSAT-----------------------TTAPSVYPLVPGC-SDTSGSSVTLGCLVK--GY 152 (220)
T ss_dssp -------------CCEEEEECSSC-----------------------CBCCEEEEECCCS-CCSCSSSEEEEEEEE--EE
T ss_pred -------------CCEEEEEccCC-----------------------CCCCeEEEccccc-ccCCCCcEEEEEEEE--EE
Confidence 00111111100 0245554444333 567899999999999 76
Q ss_pred -CCe-EEEEEECCEEcc--CCCCeEEEeeC---cEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 722 -QTM-TVEFLYNGKPIE--ASHRIRTVHAF---GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 722 -p~~-~v~W~~~g~~l~--~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
|.| .|+|++++.... ..... ...+ ....|.|.++..+| |.|+|.|.|..|....++.
T Consensus 153 ~P~p~~v~W~~~~~~~~~~~~~~~--~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~ 216 (220)
T 1pz5_B 153 FPEPVTVKWNYGALSSGVRTVSSV--LQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKE 216 (220)
T ss_dssp BSSCCEEEEGGGTCCTTEEECCCE--EETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred eCCCeEEEEecCCcccceEEcCCc--ccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeec
Confidence 888 999999886411 01111 0111 12469999998877 9999999999998766554
|
| >3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-16 Score=153.47 Aligned_cols=184 Identities=21% Similarity=0.175 Sum_probs=131.0
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCC--CceEEEecCcEEEEEEcccccCCCeEEEEE
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG--SRFKTTADFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
+|.| ..+. ++.+.+|+.++|.|.+. |.|.+.|.|+|||..+..+ .++.+...+...+|.|.+++.+|+|.|.|.
T Consensus 19 ~P~~-~~p~-~~~~~~G~~v~l~C~~~--g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 94 (215)
T 3mtr_A 19 APKL-QGPV-AVYTWEGNQVNITCEVF--AYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCT 94 (215)
T ss_dssp EEEE-ECCS-EEEECTTCCEEEEEEEE--EESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEE
T ss_pred CCcc-cCCc-eEEEECCCCEEEEEEEe--ecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEE
Confidence 4555 3333 58899999999999999 6888899999999999876 567777766778999999999999999999
Q ss_pred EEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEE
Q psy2166 143 AWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAH 222 (805)
Q Consensus 143 a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~ 222 (805)
|.|..|.......|.|..++ .+|..... ...+..+.
T Consensus 95 a~n~~g~~~~~~~l~v~~~P--------------------------------------~~p~~~~~------~~~~~~~~ 130 (215)
T 3mtr_A 95 AVNRIGQESLEFILVQADTP--------------------------------------SSPSIDQV------EPYSSTAQ 130 (215)
T ss_dssp EECSSCEEEEEEEEEECCCC--------------------------------------CCCEEEEE------EEETTEEE
T ss_pred EEECCCceEEEEEEEECCCC--------------------------------------CCCcceEE------EEecceEE
Confidence 99999998888888876543 22322211 12456788
Q ss_pred EEEEEee--CCCCCe--EEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEEEEEEEe
Q psy2166 223 FEASLIP--VGDQTM--TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 296 (805)
Q Consensus 223 l~C~~~~--~~~p~~--~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~v~ 296 (805)
|.|.... .+.|.. .+.|++++...-....+..........|.|.++...+.|.|+|.|.|..|....+..+.+.
T Consensus 131 l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~ 208 (215)
T 3mtr_A 131 VQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFK 208 (215)
T ss_dssp EEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEE
T ss_pred EEEecCCccCCCceEEEEEEEEECCCCcccccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeE
Confidence 8886421 233433 5889888753111000000000112479999999999999999999999987665555544
|
| >4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E | Back alignment and structure |
|---|
Probab=99.69 E-value=4e-16 Score=155.48 Aligned_cols=174 Identities=14% Similarity=0.187 Sum_probs=119.2
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEE----------------CCEEccCC---CceEEEE-eCcEEEEEEcccCcCCce
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFH----------------NGKPIFHK---NRVKMVS-DFGFVVMDIAYVQSHDSG 375 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~----------------~g~~l~~~---~~~~~~~-~~~~~~l~i~~v~~~d~G 375 (805)
+.+|+.++|.|.+. +.+.+.|.|+| ++...... .++.+.. ......|.|.+++.+|+|
T Consensus 13 v~~G~~v~L~C~~~--~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~G 90 (246)
T 4dzb_B 13 SKSGTSVKIECRSL--DFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSS 90 (246)
T ss_dssp EETTSCEEEEEEES--SSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCGGGCE
T ss_pred EeCCCcEEEEeEec--CCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCHHHCE
Confidence 78999999999997 77889999998 33333222 4666554 345778999999999999
Q ss_pred EEEEEEEeCce----eeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecC
Q psy2166 376 EYVCRAWNKYG----EDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKE 451 (805)
Q Consensus 376 ~Y~C~a~n~~g----~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (805)
.|.|.+.+..+ .......|.|....
T Consensus 91 ~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~--------------------------------------------------- 119 (246)
T 4dzb_B 91 FYICSARTSGDFGEQFFGPGTRLTVLEDL--------------------------------------------------- 119 (246)
T ss_dssp EEEEEECCSSGGGCCEECCCEEEEEESCG---------------------------------------------------
T ss_pred EEEEEEecCCCCcceEEcCCEEEEEecCC---------------------------------------------------
Confidence 99999987643 11233455554210
Q ss_pred CceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEE
Q psy2166 452 GQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVE 531 (805)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~ 531 (805)
....+|.+....+....+.+|+.++|.|.+.+...|++.++
T Consensus 120 ---------------------------------------~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~ 160 (246)
T 4dzb_B 120 ---------------------------------------KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELS 160 (246)
T ss_dssp ---------------------------------------GGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred ---------------------------------------CcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEE
Confidence 01245666655444444678999999999996322234999
Q ss_pred EEECCEEccCCCceEEE--------eeCC---EEEEEEccCCCCC-CEEEEEEEEcCCcceE
Q psy2166 532 WFYNGKKLPHGHRYRTF--------HDFG---IVILDILYCYEEN-SGVYECRATNKYGSDV 581 (805)
Q Consensus 532 W~~~g~~l~~~~~~~~~--------~~~~---~~~L~i~~v~~~d-~G~Y~C~a~n~~g~~~ 581 (805)
|+|||..|..+.+.... .++. .+.|.|.....+| +|.|+|.|.|......
T Consensus 161 W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~ 222 (246)
T 4dzb_B 161 WWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 222 (246)
T ss_dssp EEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred EEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence 99999998754221110 0122 1348898888888 9999999999865543
|
| >3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=160.87 Aligned_cols=170 Identities=15% Similarity=0.193 Sum_probs=109.3
Q ss_pred ccCCCceEEEEEEEeeCCCCCeEEEEEEC--CEEc------------cCC---C-cEEEEE-EcCeEEEEEcCCCCcccE
Q psy2166 214 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--GKPI------------EAS---H-RIRTVH-AFGMVVLEILGTKIEDTG 274 (805)
Q Consensus 214 ~v~~g~~~~l~C~~~~~~~p~~~i~W~k~--g~~l------------~~~---~-~~~~~~-~~~~~~L~i~~~~~~d~G 274 (805)
.+.+|++++|.|.+ .+ +.+.+.|||. +... ... . ++.... ..+...|.|.+++.+|+|
T Consensus 38 ~v~~G~~v~L~C~~--~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G 114 (270)
T 3qib_D 38 VKGQGQKAKMRCIP--EK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSA 114 (270)
T ss_dssp EEETTSCEEEEEEC--CT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCE
T ss_pred EEcCCCCEEEEEEe--cC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCe
Confidence 37899999999987 33 6689999982 2111 000 0 333332 234678999999999999
Q ss_pred EEEEEEEcCC----eeEEEEEEEEEeccC-CCCCCeEEecCCCcccccCCCeEEEEEEEeecCCCCc-EEEEEECCEEcc
Q psy2166 275 VYTCRATNKW----GQAEISVNLECVDKS-KGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPEL-KVEWFHNGKPIF 348 (805)
Q Consensus 275 ~Y~C~~~n~~----g~~~~~~~l~v~~~~-~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~~-~v~W~~~g~~l~ 348 (805)
.|.|.+.+.. ........+.|.... ...+|.+.........+..|+.++|.|.+.+ ..|.+ .+.|+++|..+.
T Consensus 115 ~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g-~~P~~~~v~W~k~g~~l~ 193 (270)
T 3qib_D 115 LYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATG-FYPDHVELSWWVNGKEVH 193 (270)
T ss_dssp EEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEE-EBSSCEEEEEEETTEEEC
T ss_pred EEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecc-eeCCCeEEEEEECCEECC
Confidence 9999999642 222333456665321 1125555544333333566999999999984 35655 899999999886
Q ss_pred CCCceEE--E------EeC---cEEEEEEcccCcCC-ceEEEEEEEeCcee
Q psy2166 349 HKNRVKM--V------SDF---GFVVMDIAYVQSHD-SGEYVCRAWNKYGE 387 (805)
Q Consensus 349 ~~~~~~~--~------~~~---~~~~l~i~~v~~~d-~G~Y~C~a~n~~g~ 387 (805)
....... . .++ ....|.|.....+| +|.|+|.|.|....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l~ 244 (270)
T 3qib_D 194 SGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 244 (270)
T ss_dssp TTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCBC
T ss_pred CCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCCC
Confidence 4321100 0 011 11347888887777 99999999987653
|
| >2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.8e-16 Score=154.31 Aligned_cols=175 Identities=15% Similarity=0.191 Sum_probs=114.7
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEECC--E---Ecc---------CCCceEEEEeCcEEEEEEcccCcCCceEEEEEE
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFHNG--K---PIF---------HKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRA 381 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~g--~---~l~---------~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a 381 (805)
+.+|+.++|.|.+. +.|.+.+.|+|+. . .+. ...++.+...+....|.|.+++.+|+|.|.|.+
T Consensus 13 v~~G~~v~L~C~~~--~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 90 (242)
T 2znx_A 13 VTPGNSVSLSCRAS--QSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQQ 90 (242)
T ss_dssp ECTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred EcCCCcEEEEEEeC--CCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEEEEeE
Confidence 88999999999997 7778899999853 1 110 134677666666778999999999999999999
Q ss_pred EeCceeeE-EEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEE
Q psy2166 382 WNKYGEDF-TRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEAR 460 (805)
Q Consensus 382 ~n~~g~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (805)
.|..+... ..+.|.|..++.....
T Consensus 91 ~n~~~~~~~~~~~L~V~~~~~~~~~------------------------------------------------------- 115 (242)
T 2znx_A 91 SNSXPYTFGGGTKLEITGGGGSGGG------------------------------------------------------- 115 (242)
T ss_dssp CSSSSCEECCCEEEEEC---------------------------------------------------------------
T ss_pred ecCCceEECCCEEEEEcCCCCCCcc-------------------------------------------------------
Confidence 98754322 2345666432210000
Q ss_pred EeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEEC--CEE
Q psy2166 461 LTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYN--GKK 538 (805)
Q Consensus 461 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~--g~~ 538 (805)
......++.+...++... +.+|++++|.|.+.+...+.+.+.|+|+ |..
T Consensus 116 ----------------------------~~~~~~~~~~~~~~~~~~-v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~ 166 (242)
T 2znx_A 116 ----------------------------GSGGGGSDIQLQESGPSL-VKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNR 166 (242)
T ss_dssp -----------------------------------CCEEEEECCSE-ECTTSCEEEEEEEESSCGGGSCEEEEEECTTSC
T ss_pred ----------------------------cccccccceeeecCCcce-ecCCCeEEEEEEEEccccCCcceeeEeeCCCCC
Confidence 000001122222233333 8999999999999942223578999984 332
Q ss_pred cc----------------CCCceEEEee--CCEEEEEEccCCCCCCEEEEEEEEcC
Q psy2166 539 LP----------------HGHRYRTFHD--FGIVILDILYCYEENSGVYECRATNK 576 (805)
Q Consensus 539 l~----------------~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~n~ 576 (805)
+. ...++.+..+ .....|.|.+++.+|+|.|+|.|.|.
T Consensus 167 ~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 222 (242)
T 2znx_A 167 LEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG 222 (242)
T ss_dssp EEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred cEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence 20 1345665443 34668999999999999999999883
|
| >2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.5e-17 Score=156.77 Aligned_cols=185 Identities=15% Similarity=0.093 Sum_probs=115.2
Q ss_pred cCCCeEEecCCCCce-ecCCCcEEEEEEEecCC--CCCceEEEEECCEecCCCCceEE-EecC----cEEEEEEcccccC
Q psy2166 63 FAKPVFIVPLKPEFK-LGEAQPLHLEAQVEPKN--DPNLKIEWIFNGKPLELGSRFKT-TADF----GFVTLDLTEVYDR 134 (805)
Q Consensus 63 ~~~p~~~~~~~~~~~-v~~G~~v~L~C~~~~~~--~p~~~v~W~k~g~~i~~~~~~~~-~~~~----~~~~L~I~~~~~~ 134 (805)
..+|.+.+.++.... +.+|+.++|.|.+.+.. .+.+.|+|+|++..+........ ...+ ...+|.|.+++.+
T Consensus 7 ~~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 86 (218)
T 2rgs_A 7 EGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWM 86 (218)
T ss_dssp --CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHH
T ss_pred CCCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcC
Confidence 345666665553333 88999999999998431 12489999999988764321111 1111 2347999999999
Q ss_pred CCeEEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccc
Q psy2166 135 DQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSN 214 (805)
Q Consensus 135 D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 214 (805)
|+|.|+|.|.|..+.......+.. .. ....+|.+...+....
T Consensus 87 D~g~Y~C~~~~~~~~~~~~~~v~~--~~-----------------------------------~~~~~P~v~~~~~~~~- 128 (218)
T 2rgs_A 87 SGKEFKCKVNNKDLPSPIERTISK--IK-----------------------------------GLVRAPQVYILPPPAE- 128 (218)
T ss_dssp TTCCEEEEEEETTCSSCEEEEECC--CC-----------------------------------CCCBCCEEEEECCCGG-
T ss_pred CCCeEEEEEECCcCCCcceEEEee--cC-----------------------------------CCCCCCEEEEECCChH-
Confidence 999999999998654311112210 00 0114566655444332
Q ss_pred cCCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCCCcEEE-EEEcCe----EEEEEcCCCCcccEEEEEEEEcCCee
Q psy2166 215 LSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRIRT-VHAFGM----VVLEILGTKIEDTGVYTCRATNKWGQ 286 (805)
Q Consensus 215 v~~g~~~~l~C~~~~~~~p~~-~i~W~k~g~~l~~~~~~~~-~~~~~~----~~L~i~~~~~~d~G~Y~C~~~n~~g~ 286 (805)
..+|+.++|.|.+.. .+|.+ .|.|+|+|..+........ ...++. ..|.|.....+|.|.|+|.|.|....
T Consensus 129 ~~~g~~~~L~C~~~g-~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~ 205 (218)
T 2rgs_A 129 QLSRKDVSLTCLVVG-FNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK 205 (218)
T ss_dssp GTTSSEEEEEEEEEE-EBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred HhcCCceEEEEEEEe-eeCCCcEEEEEECCEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence 236999999999842 25554 9999999998753211111 122221 34666655566799999999997643
|
| >3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.4e-18 Score=166.18 Aligned_cols=171 Identities=15% Similarity=0.134 Sum_probs=97.2
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEECC--Eec------------CCCCceEEEecCcEEEEEEcccccCCCeE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG--KPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g--~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 138 (805)
+..+.+.+|++++|.|.+. +.|.+.|.|+|++ ..+ ....|+.+...++..+|.|.+++.+|+|.
T Consensus 30 p~~~~v~~G~~v~L~C~~~--~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 107 (233)
T 3bqu_C 30 PASLSMSIGEKVTIRCITS--TDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVAD 107 (233)
T ss_dssp CSBC-------CCEEEEEE--EEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCSE
T ss_pred CCeEEEecCCCEEEEEecC--CcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCEE
Confidence 3467899999999999998 4556789999853 211 11346655555566689999999999999
Q ss_pred EEEEEEeCCeeEE-EEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCC
Q psy2166 139 YTCRAWNLAGETF-TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 217 (805)
Q Consensus 139 Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~ 217 (805)
|.|.+.|..+... ....|.|... ..+|.+...+.... +.+
T Consensus 108 Y~C~~~~~~~~~~~~~~~l~V~~~--------------------------------------~~~p~v~~~~~~~~-~~~ 148 (233)
T 3bqu_C 108 YYCLQSDNLPYTFGGGTNLEIKRA--------------------------------------DAAPTVSIFPPSSE-QLT 148 (233)
T ss_dssp EEEEECSSSSCCBCCCCBC---CC--------------------------------------CBCCEEEEECCCHH-HHH
T ss_pred EEEEEecCCceeecCCEEEEEeCC--------------------------------------CCCCEEEEeCCCHH-hhc
Confidence 9999988654321 1223444321 13455555433322 347
Q ss_pred CceEEEEEEEeeCCCCC-eEEEEEECCEEccCCCcEEE-EE--EcC----eEEEEEcCCCCcccEEEEEEEEcCCe
Q psy2166 218 GEIAHFEASLIPVGDQT-MTVEFLYNGKPIEASHRIRT-VH--AFG----MVVLEILGTKIEDTGVYTCRATNKWG 285 (805)
Q Consensus 218 g~~~~l~C~~~~~~~p~-~~i~W~k~g~~l~~~~~~~~-~~--~~~----~~~L~i~~~~~~d~G~Y~C~~~n~~g 285 (805)
|+.++|.|.+.. ..|. +.+.|+|+|..+........ .. .++ .+.|.|.....+|+|.|+|.|.|...
T Consensus 149 g~~v~L~C~~~g-~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~ 223 (233)
T 3bqu_C 149 SGGASVVCFLNN-FYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTS 223 (233)
T ss_dssp TTEEEEEEEEEE-EBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC--
T ss_pred CCceEEEEEEcc-ccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 999999999853 2344 48999999998765411110 10 111 24789999999999999999998654
|
| >2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=154.86 Aligned_cols=184 Identities=15% Similarity=0.191 Sum_probs=116.7
Q ss_pred CCCeEEecCCCccc-ccCCCeEEEEEEEeecC--CCCcEEEEEECCEEccCCCceEEEE-eC----cEEEEEEcccCcCC
Q psy2166 302 QPPKFTSHIKSLEG-LKDGDSAHFECTLTPVN--DPELKVEWFHNGKPIFHKNRVKMVS-DF----GFVVMDIAYVQSHD 373 (805)
Q Consensus 302 ~~p~~~~~~~~~~~-~~~g~~~~l~C~~~~~~--~p~~~v~W~~~g~~l~~~~~~~~~~-~~----~~~~l~i~~v~~~d 373 (805)
.+|.+...+..... +.+|+.++|.|.+.+.. .+.+.|.|+|++..+.......... .+ ....|.|.+++.+|
T Consensus 8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D 87 (218)
T 2rgs_A 8 GGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMS 87 (218)
T ss_dssp -CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHHT
T ss_pred CCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcCC
Confidence 45555555444332 67899999999998422 2348999999998775321110000 01 12469999999999
Q ss_pred ceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCc
Q psy2166 374 SGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQ 453 (805)
Q Consensus 374 ~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (805)
+|.|+|.|.|..+.......+..
T Consensus 88 ~g~Y~C~~~~~~~~~~~~~~v~~--------------------------------------------------------- 110 (218)
T 2rgs_A 88 GKEFKCKVNNKDLPSPIERTISK--------------------------------------------------------- 110 (218)
T ss_dssp TCCEEEEEEETTCSSCEEEEECC---------------------------------------------------------
T ss_pred CCeEEEEEECCcCCCcceEEEee---------------------------------------------------------
Confidence 99999999998764311111110
Q ss_pred eEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCC-cEEEE
Q psy2166 454 SAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPD-LVVEW 532 (805)
Q Consensus 454 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~-~~v~W 532 (805)
...+..+|.+....+... ..+|+.++|.|.+.++ .|. +.|+|
T Consensus 111 -----------------------------------~~~~~~~P~v~~~~~~~~-~~~g~~~~L~C~~~g~-~P~~~~v~W 153 (218)
T 2rgs_A 111 -----------------------------------IKGLVRAPQVYILPPPAE-QLSRKDVSLTCLVVGF-NPGDISVEW 153 (218)
T ss_dssp -----------------------------------CCCCCBCCEEEEECCCGG-GTTSSEEEEEEEEEEE-BSSCCEEEE
T ss_pred -----------------------------------cCCCCCCCEEEEECCChH-HhcCCceEEEEEEEee-eCCCcEEEE
Confidence 012346777766555443 3469999999999952 454 49999
Q ss_pred EECCEEccCCCceEE--EeeCCE---EEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 533 FYNGKKLPHGHRYRT--FHDFGI---VILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 533 ~~~g~~l~~~~~~~~--~~~~~~---~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
+|||..+........ ..++.. +.|.|.....+|.|.|+|.|.|....
T Consensus 154 ~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~ 205 (218)
T 2rgs_A 154 TSNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLK 205 (218)
T ss_dssp EETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSG
T ss_pred EECCEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCC
Confidence 999998854221111 122222 23566654455799999999998654
|
| >3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=161.07 Aligned_cols=183 Identities=20% Similarity=0.294 Sum_probs=120.5
Q ss_pred eecccccccccCCCceEEEEEEEee-CCCCCeEEEEEECCEEccCC------------------CcEEEEE--EcCeEEE
Q psy2166 205 FTSEFQHLSNLSEGEIAHFEASLIP-VGDQTMTVEFLYNGKPIEAS------------------HRIRTVH--AFGMVVL 263 (805)
Q Consensus 205 ~~~~~~~~~~v~~g~~~~l~C~~~~-~~~p~~~i~W~k~g~~l~~~------------------~~~~~~~--~~~~~~L 263 (805)
+...+... .+.+|+.++|.|.+.. .+.+.+.+.|+|++...... .++.... ..+...|
T Consensus 8 v~~~~~~~-~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 86 (268)
T 3mj6_A 8 LTVSSPQL-RVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGSL 86 (268)
T ss_dssp ----CCEE-EEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCCE
T ss_pred cccCCCce-EEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEEE
Confidence 33333333 4789999999998731 16778999999966432211 2222111 1123679
Q ss_pred EEcCCCCcccEEEEEEEEcCCeeE--EEEEEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEee-cCCCCcEEEE
Q psy2166 264 EILGTKIEDTGVYTCRATNKWGQA--EISVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTP-VNDPELKVEW 340 (805)
Q Consensus 264 ~i~~~~~~d~G~Y~C~~~n~~g~~--~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~p~~~v~W 340 (805)
.|.+++.+|+|.|+|.+.+..+.. ...+.|.|.. ..|. ...+.+|+.++|.|.+.+ .+.|.+.+.|
T Consensus 87 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~----~~p~-------~~~v~~G~~v~L~C~~~~~~~~p~~~v~W 155 (268)
T 3mj6_A 87 LLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLP----EEPR-------DLRVRVGDTTQMRCSIQSTEEKRVTKVNW 155 (268)
T ss_dssp EECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEEC----CCCS-------EEEEETTCCEEECCBCEESSSSCCCEEEE
T ss_pred EECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEec----cCCC-------ccccccCCcEEEEEEecCCCCCCccceEE
Confidence 999999999999999999875544 4445555431 1121 223789999999999942 2778999999
Q ss_pred EEC-CEEccCC---------------------CceEEEE--eCcEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEE
Q psy2166 341 FHN-GKPIFHK---------------------NRVKMVS--DFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKC 396 (805)
Q Consensus 341 ~~~-g~~l~~~---------------------~~~~~~~--~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 396 (805)
+++ +..+... .++.+.. ......|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V 235 (268)
T 3mj6_A 156 MFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHV 235 (268)
T ss_dssp EEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEE
Confidence 994 3221110 1111111 022346999999999999999999999999888899888
Q ss_pred Eec
Q psy2166 397 FGK 399 (805)
Q Consensus 397 ~~~ 399 (805)
...
T Consensus 236 ~~~ 238 (268)
T 3mj6_A 236 VQD 238 (268)
T ss_dssp ECC
T ss_pred EcC
Confidence 543
|
| >2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-16 Score=155.58 Aligned_cols=172 Identities=12% Similarity=0.203 Sum_probs=110.4
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEEC--CEEc---------------cCCCceEEEE-eCcEEEEEEcccCcCCceEE
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFHN--GKPI---------------FHKNRVKMVS-DFGFVVMDIAYVQSHDSGEY 377 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~--g~~l---------------~~~~~~~~~~-~~~~~~l~i~~v~~~d~G~Y 377 (805)
+.+|+.++|.|. . +.|.+.|.|+|+ +..+ ....++.+.. ......|.|.+++.+|+|.|
T Consensus 12 v~~G~~v~L~C~-~--~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y 88 (238)
T 2p1y_A 12 AVTGGKVTLSCN-Q--TNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQTSVY 88 (238)
T ss_dssp EETTCCEEEEEE-E--CSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGCEEE
T ss_pred EeCCCEEEEEee-c--CCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccCeeE
Confidence 889999999999 5 778899999995 2111 1133555543 23445799999999999999
Q ss_pred EEEEEeCceeeE-----EEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCC
Q psy2166 378 VCRAWNKYGEDF-----TRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEG 452 (805)
Q Consensus 378 ~C~a~n~~g~~~-----~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (805)
.|.|.|..|... ....|.|...+... .|+..
T Consensus 89 ~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~----~p~~~---------------------------------------- 124 (238)
T 2p1y_A 89 FCASGDLGQTNERLFFGHGTKLSVLGSADDA----KKDAA---------------------------------------- 124 (238)
T ss_dssp EEEEEC------CEEECCCEEEEEECCCHHH----HHHHH----------------------------------------
T ss_pred EEEEEeCCCccccceeCCCeEEEEeccCCCC----cCCcc----------------------------------------
Confidence 999998765211 22455554221100 00000
Q ss_pred ceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEE
Q psy2166 453 QSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEW 532 (805)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W 532 (805)
...+.+...+.. ..+.+|++++|.|.+. +.|.+.+.|
T Consensus 125 ----------------------------------------~~~~~v~~~p~~-~~v~~G~~v~L~C~~~--~~p~~~i~W 161 (238)
T 2p1y_A 125 ----------------------------------------KKDGQVRQSPQS-LTVWEGETAILNCSYE--NSAFDYFPW 161 (238)
T ss_dssp ----------------------------------------HHHTCCEEECSE-EEEETTSCEEEEEECC--CTTCCEEEE
T ss_pred ----------------------------------------cceeeEEccCce-EEEeCCCeEEEEEEEe--cCCCCcEEE
Confidence 001133333333 2388999999999998 677889999
Q ss_pred EECC--E---Ec---------cCCCceEEEe--eCCEEEEEEccCCCCCCEEEEEEEEcCC
Q psy2166 533 FYNG--K---KL---------PHGHRYRTFH--DFGIVILDILYCYEENSGVYECRATNKY 577 (805)
Q Consensus 533 ~~~g--~---~l---------~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 577 (805)
+|++ . .+ ..+.++.+.. ..+...|.|.+++.+|+|.|+|.|.|..
T Consensus 162 ~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 162 YQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp EEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred EEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence 9964 1 11 1134555442 3346689999999999999999999974
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-15 Score=141.54 Aligned_cols=161 Identities=11% Similarity=0.094 Sum_probs=112.2
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTST 154 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~ 154 (805)
.+.|.+|++++|+|.+ +...|.+.|+|++.+..+ ++... +.....|.|.+++.+|+|.|.|.|.|..+.....+
T Consensus 16 ~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~~~~--~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~ 89 (210)
T 1gsm_A 16 VVAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GAVQS--DTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTV 89 (210)
T ss_dssp EEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CCEEE--ESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred ceEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---CcEEe--cCCccEEEECccCcccCceEEEEEEeCCCceEEEE
Confidence 3699999999999999 322333399999966544 23222 24456899999999999999999999998888889
Q ss_pred EEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCC-
Q psy2166 155 TIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ- 233 (805)
Q Consensus 155 ~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p- 233 (805)
.|+|..+|.... + .+ . .+.+|+.+ |.|.+.. ..|
T Consensus 90 ~ltV~~~P~~~~--------------------------------------i--~~-~--~~~~g~~~-l~C~a~g-~~P~ 124 (210)
T 1gsm_A 90 QLLVYAFPNQLT--------------------------------------V--SP-A--ALVPGDPE-VACTAHK-VTPV 124 (210)
T ss_dssp EEEEEBCCSEEE--------------------------------------E--ES-S--SBCTTCCE-EEEEEEE-EBCC
T ss_pred EEEEEecCCCcE--------------------------------------E--cc-c--eEEeCCce-EEEEeCC-CCCC
Confidence 999986553211 1 11 1 25577778 9999853 235
Q ss_pred ---CeEEEEEECCEEccCCCcEE--EEE--------EcC----eEEEEEcCCCCcccEEEEEEEEcCCee
Q psy2166 234 ---TMTVEFLYNGKPIEASHRIR--TVH--------AFG----MVVLEILGTKIEDTGVYTCRATNKWGQ 286 (805)
Q Consensus 234 ---~~~i~W~k~g~~l~~~~~~~--~~~--------~~~----~~~L~i~~~~~~d~G~Y~C~~~n~~g~ 286 (805)
.++|.|||+|++|....... ... ... .++|.+.....+|.+.|+|.|.+..-.
T Consensus 125 ~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~ 194 (210)
T 1gsm_A 125 DPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPG 194 (210)
T ss_dssp CTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETT
T ss_pred CCCCcEEEEEECCEEcccccccccceecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCC
Confidence 46999999999996543111 100 111 245666677777788999999985433
|
| >1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ... | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-16 Score=154.91 Aligned_cols=182 Identities=10% Similarity=0.039 Sum_probs=116.4
Q ss_pred CCCceecCCCcEEEEEEEecCCCC--CceEEEEECC--Ee---c---C-----------CCCceEEEec--CcEEEEEEc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDP--NLKIEWIFNG--KP---L---E-----------LGSRFKTTAD--FGFVTLDLT 129 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p--~~~v~W~k~g--~~---i---~-----------~~~~~~~~~~--~~~~~L~I~ 129 (805)
+..+.+.+|++++|.|.+. +.+ .+.|.|+|++ .. + . ...|+.+..+ ++..+|.|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 84 (227)
T 1mju_H 7 PGAELVKPGASVKLSCKAS--GYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS 84 (227)
T ss_dssp CSEEEECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred CCCeEEcCCCCEEEEEEec--CCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEEC
Confidence 4467899999999999998 444 6789999953 21 1 0 1357777654 457799999
Q ss_pred ccccCCCeEEEEEEEeCCeeE-EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecc
Q psy2166 130 EVYDRDQGIYTCRAWNLAGET-FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSE 208 (805)
Q Consensus 130 ~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 208 (805)
+++.+|+|.|.|.+.+..+.. ...+.|.|.... ..+|.+...
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~-------------------------------------~~~P~v~~~ 127 (227)
T 1mju_H 85 SLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAK-------------------------------------TTAPSVYPL 127 (227)
T ss_dssp SCCGGGCEEEEEEEEETTEEEECCCEEEEECSSC-------------------------------------CBCCEEEEE
T ss_pred CCCcccCEEEEEEECCCCceEEcCcEEEEEcCCC-------------------------------------CCCCEEEEe
Confidence 999999999999999864322 123466665311 023443332
Q ss_pred cccccccCCCceEEEEEEEeeCCCCCe-EEEEEECCEEccC--CCcEEEE-EEcCeEEEEEcCCCCcccEEEEEEEEcCC
Q psy2166 209 FQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEA--SHRIRTV-HAFGMVVLEILGTKIEDTGVYTCRATNKW 284 (805)
Q Consensus 209 ~~~~~~v~~g~~~~l~C~~~~~~~p~~-~i~W~k~g~~l~~--~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 284 (805)
.+.. .+.+|+.++|.|.+.. ..|.+ .+.|+++|..+.. ....... .....+.|.|..+..+| |.|+|.|.|..
T Consensus 128 ~~~~-~~~~g~~v~L~C~~~g-~~P~p~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~ 204 (227)
T 1mju_H 128 APVC-GDTSGSSVTLGCLVKG-YFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPA 204 (227)
T ss_dssp CCCC-------CEEEEEEEEE-EBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGG
T ss_pred cCCc-cccCCCcEEEEEEeec-EeCCCeEEEEecCCCcCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECC
Confidence 2221 2568999999999842 23655 9999999876531 1111100 00013579999998888 99999999987
Q ss_pred eeEEEEEEEEEe
Q psy2166 285 GQAEISVNLECV 296 (805)
Q Consensus 285 g~~~~~~~l~v~ 296 (805)
+.......+.+.
T Consensus 205 ~~~~~~~~~~~~ 216 (227)
T 1mju_H 205 SSTKVDKKIEPR 216 (227)
T ss_dssp GTEEEEEECCCC
T ss_pred CCcceEEEeCCC
Confidence 766655555443
|
| >3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-14 Score=135.92 Aligned_cols=213 Identities=13% Similarity=0.226 Sum_probs=142.0
Q ss_pred ccCCCeEEEEEEEeecCCC---CcEEEEEECCEEccCCCceEEEEeCcEEEEEEcccCcCCceEEEEEEEeCceeeEEEE
Q psy2166 316 LKDGDSAHFECTLTPVNDP---ELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRA 392 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p---~~~v~W~~~g~~l~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 392 (805)
+..|+.++|.|.+.+ +.| ...++|+|||..+..... .|.|..+...|+|.|+|.+.+..|....+.
T Consensus 14 i~~GdsVTLTatVaG-GkP~pspyTYqWyKDG~~IsGaT~----------tLti~s~t~sdSG~YqCvVTDa~Gcs~tSs 82 (304)
T 3shs_A 14 FLAGDGFTLTATVAG-DEPLPSNLTYTWTKDDQPHENNTA----------TLTVADATSENAGSYKVTVQDTDTMTSVES 82 (304)
T ss_dssp BCTTCCEEEEEEEEE-SSSCCCCEEEEEEETTEECSCCSS----------EEEESSCCGGGCEEEEEEEEETTTCCEEEC
T ss_pred ccCCCCEEEEEEecC-CCCCCCCceEEEEECCccccCCcc----------eEEeeeccccCCeEEEEEEEECCCCeeeee
Confidence 779999999999985 777 568999999998764321 578888999999999999999888765554
Q ss_pred EEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEE
Q psy2166 393 TIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCE 472 (805)
Q Consensus 393 ~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 472 (805)
.+.|....
T Consensus 83 ~VtVT~~a------------------------------------------------------------------------ 90 (304)
T 3shs_A 83 EVFLMEEA------------------------------------------------------------------------ 90 (304)
T ss_dssp CCEEECBC------------------------------------------------------------------------
T ss_pred eEEEeccC------------------------------------------------------------------------
Confidence 44443211
Q ss_pred EeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEE--eeCCCC-----CcEEEEEECCEEccCCCce
Q psy2166 473 LFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARL--TPVTDP-----DLVVEWFYNGKKLPHGHRY 545 (805)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v--~~~g~p-----~~~v~W~~~g~~l~~~~~~ 545 (805)
.+.+....+....+..|..+.|.+.+ .+ |.| ..++.|+|||..+....
T Consensus 91 ----------------------~l~i~it~P~s~~vssg~sVtL~aTVt~SG-GtppA~~~~yTYQWyKngt~IsgAq-- 145 (304)
T 3shs_A 91 ----------------------ELIVNITEPQHFYVSSQTDVELHATVKFSG-GKTPADNYELHYSWSKGEDVIDTTQ-- 145 (304)
T ss_dssp ----------------------CEEEEESSCSEEEECSSCCEEEEEEEEETT-SCCSSTTCCCEEEEEETTEEEESSS--
T ss_pred ----------------------ceeEEecCCCceeccCCCeEEEEEEEeccC-CCCcccCCCceeEEeeCCeEccCcc--
Confidence 11222222222235567889999988 54 444 57999999998775432
Q ss_pred EEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEE--EEEEEeee---eee---------------------eec--
Q psy2166 546 RTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK--ASLKCVSK---TNL---------------------ILE-- 597 (805)
Q Consensus 546 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~--~~l~V~~~---~~~---------------------~~~-- 597 (805)
.|++......++|.|+|++.|..+....+ +.+.+..- ..+ +++
T Consensus 146 ---------~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (304)
T 3shs_A 146 ---------DITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDS 216 (304)
T ss_dssp ---------EEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECEEEEEECCCSEEEEETTSCEEECCEEEEECCSCC
T ss_pred ---------ccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEccccchhheEeehhhcCcEEEEEEEEeeccccCC
Confidence 37888888899999999999998744333 33322211 111 000
Q ss_pred CCCC----eEEEEE--CCEEcc---------CCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEe
Q psy2166 598 SQLP----EVEWFY--NGKKLP---------HGHRYRTFHDFGIVILDILYCYEENSGVYECRATN 648 (805)
Q Consensus 598 ~~~p----~v~W~~--~g~~l~---------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 648 (805)
.-.| .+.|+. .|+.-+ .-..+.+..++. |.-..+..+|...|+|.|.-
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 279 (304)
T 3shs_A 217 SGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGH---LFKESATYDDTAKFWCVAKL 279 (304)
T ss_dssp TTCCEEEEEEEEEEECTTCCSCEEEESSSEECGGGEEECTTSC---EEESSCCGGGCEEEEEEEEE
T ss_pred CCCCceEEEEEEEEeecCccCchhhhhhhhhhhccceeCCCcc---eeecccccccchheeeHHHH
Confidence 1123 678884 333211 112355555554 77788899999999999864
|
| >1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=156.30 Aligned_cols=174 Identities=16% Similarity=0.163 Sum_probs=116.2
Q ss_pred CCceecCCCcEEEEEEEecCCCC--CceEEEEECC--Eec-----------------CCCCceEEEec--CcEEEEEEcc
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDP--NLKIEWIFNG--KPL-----------------ELGSRFKTTAD--FGFVTLDLTE 130 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p--~~~v~W~k~g--~~i-----------------~~~~~~~~~~~--~~~~~L~I~~ 130 (805)
+.+.+.+|++++|.|.+. +.+ .+.|.|+|+. ..+ ....|+.+..+ .+..+|.|.+
T Consensus 8 ~~~~v~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (225)
T 1op3_H 8 GGGLVKAGGSLILSCGVS--NFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHK 85 (225)
T ss_dssp CCEEEETTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred CCeEecCCCCEEEEEEec--CcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECC
Confidence 357899999999999998 344 6789999852 211 12357877654 4567999999
Q ss_pred cccCCCeEEEEEEEeCCe-----e---EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCC
Q psy2166 131 VYDRDQGIYTCRAWNLAG-----E---TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRP 202 (805)
Q Consensus 131 ~~~~D~G~Y~C~a~n~~g-----~---~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (805)
++.+|+|.|.|.+.+..| . ....+.|.|...+ ..+
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~-------------------------------------~~~ 128 (225)
T 1op3_H 86 MRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPAS-------------------------------------TKG 128 (225)
T ss_dssp CCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCS-------------------------------------CBC
T ss_pred CChhhCEEEEEEEecCCCccccccceeecCCEEEecccCC-------------------------------------CcC
Confidence 999999999999998754 1 1124567765421 023
Q ss_pred CceecccccccccCCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCCCcEEEEEEcC----eEEEEEcCCCCcccEEEE
Q psy2166 203 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRIRTVHAFG----MVVLEILGTKIEDTGVYT 277 (805)
Q Consensus 203 p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~-~i~W~k~g~~l~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~ 277 (805)
|.+....+.. .+.+|+.++|.|.+.. ..|.+ .+.|+++|..+...........++ .+.|.|.+...+| |.|+
T Consensus 129 P~v~~~~~~~-~~~~g~~v~L~C~~~g-~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~ 205 (225)
T 1op3_H 129 PSVFPLAPSS-KSTSGGTAALGCLVKD-YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYI 205 (225)
T ss_dssp CEEEEECCCT-TCCCCCEEEEEEEEEE-EBSSCCEEECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCC
T ss_pred CeEEEecccc-cccCCCcEEEEEEEEe-EECCCeEEEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEE
Confidence 4443322221 2568999999999852 33665 999999987642110000111112 2468999888888 9999
Q ss_pred EEEEcCCeeEEE
Q psy2166 278 CRATNKWGQAEI 289 (805)
Q Consensus 278 C~~~n~~g~~~~ 289 (805)
|.|.|..+....
T Consensus 206 C~a~n~~~~~~~ 217 (225)
T 1op3_H 206 CNVNHKPSNTKV 217 (225)
T ss_dssp EEEEEGGGTEEE
T ss_pred EEEEcCCCCccE
Confidence 999997665443
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-16 Score=132.35 Aligned_cols=94 Identities=24% Similarity=0.383 Sum_probs=88.3
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
.+|.|...+.+. .+.+|+.+.|.|.+. |.|.|.|.|+|+|..+..+.++.+..+++...|.|.++..+|+|.|+|.|
T Consensus 7 ~~P~~~~~~~~~-~v~~G~~v~l~C~~~--g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 83 (103)
T 3qp3_A 7 HAPRITLRMRSH-RVPCGQNTRFILNVQ--SKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVC 83 (103)
T ss_dssp EEEEEEECCCCE-EEETTCCEEEEEEEE--EESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred CCCEEEeCCcce-EEeCCCeEEEEEEEE--ecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEE
Confidence 578999988888 999999999999999 99999999999999999999998888888889999999999999999999
Q ss_pred EcCCccEEEEEEEEEEE
Q psy2166 770 TNKWGQAEISVNLECVV 786 (805)
Q Consensus 770 ~N~~G~~~~~~~l~V~~ 786 (805)
.|..|....++.|.|..
T Consensus 84 ~N~~G~~~~~~~l~V~~ 100 (103)
T 3qp3_A 84 TNYKGEASDYATLDVTG 100 (103)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EeCCCcEEEEEEEEEEC
Confidence 99999999999999864
|
| >2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.3e-16 Score=157.45 Aligned_cols=180 Identities=14% Similarity=0.185 Sum_probs=117.0
Q ss_pred CCceecCCCcEEEEEEEecCCCC--CceEEEEECC--Eec-----------------CCCCceEEEec--CcEEEEEEcc
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDP--NLKIEWIFNG--KPL-----------------ELGSRFKTTAD--FGFVTLDLTE 130 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p--~~~v~W~k~g--~~i-----------------~~~~~~~~~~~--~~~~~L~I~~ 130 (805)
..+.+.+|++++|.|.+. +.+ .+.|.|+|+. ..+ ....|+.+..+ ++..+|+|.+
T Consensus 30 ~~~~v~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 107 (291)
T 2gki_A 30 GPELVKPGASVKMSCKAS--GYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSS 107 (291)
T ss_dssp CCEEECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECS
T ss_pred CcEEecCCCCEEEEEecc--CCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECc
Confidence 368899999999999998 444 5789999952 211 01246666543 3567899999
Q ss_pred cccCCCeEEEEEEEeCC-e--eE--EEEEEEEEeccc-c-ccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCC
Q psy2166 131 VYDRDQGIYTCRAWNLA-G--ET--FTSTTIYCSTKE-S-LIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPP 203 (805)
Q Consensus 131 ~~~~D~G~Y~C~a~n~~-g--~~--~~~~~l~V~~~~-~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 203 (805)
++.+|+|.|+|.+.+.. | .. ...+.|.|.... . ....... ....++
T Consensus 108 v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~---------------------------~~~~~~ 160 (291)
T 2gki_A 108 LTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSG---------------------------GGGSDL 160 (291)
T ss_dssp CCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC-------------------------------------------CC
T ss_pred CCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCC---------------------------CCCccc
Confidence 99999999999999874 2 11 123456665310 0 0000000 000123
Q ss_pred ceecccccccccCCCceEEEEEEEeeCCCCCe------EEEEEEC--CEEcc------------CCCcEEEEEEcCeEEE
Q psy2166 204 QFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM------TVEFLYN--GKPIE------------ASHRIRTVHAFGMVVL 263 (805)
Q Consensus 204 ~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~------~i~W~k~--g~~l~------------~~~~~~~~~~~~~~~L 263 (805)
.+...+... .+.+|++++|.|.+ .+.+.+ .+.|||+ |..+. ...++..........|
T Consensus 161 ~v~~~p~~~-~v~~G~~v~L~C~~--~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L 237 (291)
T 2gki_A 161 VMSQSPSSL-AVSAGEKVTMSCKS--SQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTL 237 (291)
T ss_dssp CEECSCSEE-EEETTSCEEEEEEE--SSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEE
T ss_pred eEEcCCCEE-EEcCCCcEEEEEEc--CCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEE
Confidence 344333333 47899999999998 566655 8999996 32111 1345555445556789
Q ss_pred EEcCCCCcccEEEEEEEEcCCe
Q psy2166 264 EILGTKIEDTGVYTCRATNKWG 285 (805)
Q Consensus 264 ~i~~~~~~d~G~Y~C~~~n~~g 285 (805)
.|.+++.+|+|.|+|.+.|...
T Consensus 238 ~I~~v~~~DsG~Y~C~a~~~~~ 259 (291)
T 2gki_A 238 TISSVQAEDLAVYYCKQSYYHM 259 (291)
T ss_dssp EESSCCGGGCEEEEEEEEETTE
T ss_pred EECCCCHHHCEEEEEEEccCCc
Confidence 9999999999999999998643
|
| >1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-16 Score=154.13 Aligned_cols=178 Identities=13% Similarity=0.175 Sum_probs=118.8
Q ss_pred CCCceecCCCcEEEEEEEecCCCC--CceEEEEECC--Ee---c---C-------------CCCceEEEec--CcEEEEE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDP--NLKIEWIFNG--KP---L---E-------------LGSRFKTTAD--FGFVTLD 127 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p--~~~v~W~k~g--~~---i---~-------------~~~~~~~~~~--~~~~~L~ 127 (805)
+..+.+.+|+.++|.|.+. +.+ .+.|.|+|++ .. + . ...|+.+..+ .+..+|.
T Consensus 7 p~~~~~~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 84 (220)
T 1pz5_B 7 SGGGLVQPGGSMKLSCVAS--GFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQ 84 (220)
T ss_dssp ECCEEECTTCCEEEEEEEE--SSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEE
T ss_pred cCCEEEcCCCeEEEEEEEc--CCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEE
Confidence 3467899999999999998 344 6899999953 21 1 0 1357777653 3567899
Q ss_pred EcccccCCCeEEEEEEEeCCeeE-E--EEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCc
Q psy2166 128 LTEVYDRDQGIYTCRAWNLAGET-F--TSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQ 204 (805)
Q Consensus 128 I~~~~~~D~G~Y~C~a~n~~g~~-~--~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 204 (805)
|.+++.+|+|.|+|.+.+..+.. . ..+.|.|.... ..+|.
T Consensus 85 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~-------------------------------------~~~P~ 127 (220)
T 1pz5_B 85 MNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSAT-------------------------------------TTAPS 127 (220)
T ss_dssp ECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC-------------------------------------CBCCE
T ss_pred EccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCC-------------------------------------CCCCe
Confidence 99999999999999999875321 1 34566665311 12354
Q ss_pred eecccccccccCCCceEEEEEEEeeCCCCCe-EEEEEECCEEcc--CCCcEEEE-EEcCeEEEEEcCCCCcccEEEEEEE
Q psy2166 205 FTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIE--ASHRIRTV-HAFGMVVLEILGTKIEDTGVYTCRA 280 (805)
Q Consensus 205 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~-~i~W~k~g~~l~--~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~ 280 (805)
+....+.. .+.+|+.++|.|.+. ...|.| .+.|++++..+. ........ .-.....|.|.+...+| |.|+|.|
T Consensus 128 i~~~~~~~-~~~~g~~v~L~C~~~-g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a 204 (220)
T 1pz5_B 128 VYPLVPGC-SDTSGSSVTLGCLVK-GYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNV 204 (220)
T ss_dssp EEEECCCS-CCSCSSSEEEEEEEE-EEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEE
T ss_pred EEEccccc-ccCCCCcEEEEEEEE-EEeCCCeEEEEecCCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEE
Confidence 44333222 367899999999984 233777 999999886421 00100000 00013578998888866 9999999
Q ss_pred EcCCeeEEEEEE
Q psy2166 281 TNKWGQAEISVN 292 (805)
Q Consensus 281 ~n~~g~~~~~~~ 292 (805)
.|..+..+.++.
T Consensus 205 ~n~~~~~~~~~~ 216 (220)
T 1pz5_B 205 AHPASKVDLIKE 216 (220)
T ss_dssp EEGGGTEEEEEE
T ss_pred EECCccEeeeec
Confidence 999887666554
|
| >3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.2e-16 Score=156.52 Aligned_cols=183 Identities=16% Similarity=0.162 Sum_probs=118.7
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEECC--EecC-----------------CCCceEEEe--cCcEEEEEEccc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG--KPLE-----------------LGSRFKTTA--DFGFVTLDLTEV 131 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g--~~i~-----------------~~~~~~~~~--~~~~~~L~I~~~ 131 (805)
+..+.+.+|++|+|.|.+.+...+.+.+.|+|.. ..+. ...|+.+.. ..+.++|.|.++
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (280)
T 3fku_X 7 SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSL 86 (280)
T ss_dssp CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSC
T ss_pred CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence 4578899999999999998432366889999832 1110 124777763 456779999999
Q ss_pred ccCCCeEEEEEEEeC---------CeeEEEEEEEEEec-cccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCC
Q psy2166 132 YDRDQGIYTCRAWNL---------AGETFTSTTIYCST-KESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGR 201 (805)
Q Consensus 132 ~~~D~G~Y~C~a~n~---------~g~~~~~~~l~V~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (805)
+.+|+|.|+|.+.+. .........|.|.. ...... . .......
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~-----~----------------------~~~~~~~ 139 (280)
T 3fku_X 87 RSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGG-----G----------------------GSGGGGI 139 (280)
T ss_dssp CSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC-----------------------------------------C
T ss_pred ChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCC-----C----------------------CCCceEe
Confidence 999999999999886 11122344566543 110000 0 0000012
Q ss_pred CCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEEC--CEEcc------------CCCcEEEEEEcCeEEEEEcC
Q psy2166 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN--GKPIE------------ASHRIRTVHAFGMVVLEILG 267 (805)
Q Consensus 202 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~--g~~l~------------~~~~~~~~~~~~~~~L~i~~ 267 (805)
+|.+...+. ..+.+|++++|.|.+.....+.+.+.|||. +..+. ...++..........|.|.+
T Consensus 140 ~~~v~~~p~--~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 217 (280)
T 3fku_X 140 QPGLTQPPS--VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITG 217 (280)
T ss_dssp CCSBBCCSE--EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECS
T ss_pred eeEEEeCCc--EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECC
Confidence 344444444 358899999999998421222478999983 32221 12455555556678899999
Q ss_pred CCCcccEEEEEEEEcCC
Q psy2166 268 TKIEDTGVYTCRATNKW 284 (805)
Q Consensus 268 ~~~~d~G~Y~C~~~n~~ 284 (805)
++.+|+|.|.|.+.+..
T Consensus 218 v~~~DsG~Y~C~~~~~~ 234 (280)
T 3fku_X 218 LQPEDEADYYCSTWDSS 234 (280)
T ss_dssp CCGGGCSEEEEEEEETT
T ss_pred CCHHHCEEEEEEEecCC
Confidence 99999999999999875
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.4e-16 Score=130.30 Aligned_cols=94 Identities=24% Similarity=0.275 Sum_probs=85.3
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEE-eeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTV-HAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
.+|.|...+.+. .+.+|+.+.|.|.+. |.|.|.|.|+|+|..+....++.+. ..++...|.|.++..+|+|.|+|.
T Consensus 4 ~~P~~~~~~~~~-~v~~G~~v~l~C~~~--g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 80 (99)
T 1g1c_A 4 EAPKIFERIQSQ-TVGQGSDAHFRVRVV--GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVK 80 (99)
T ss_dssp EEEEEEECCCCE-EEETTSCEEEEEEEE--EESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred CCCceEecCcce-EEcCCCcEEEEEEEE--EeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEE
Confidence 688999988888 999999999999999 9999999999999999988776653 456778999999999999999999
Q ss_pred EEcCCccEEEEEEEEEEE
Q psy2166 769 ATNKWGQAEISVNLECVV 786 (805)
Q Consensus 769 a~N~~G~~~~~~~l~V~~ 786 (805)
|.|..|....++.|.|..
T Consensus 81 a~N~~g~~~~~~~l~V~~ 98 (99)
T 1g1c_A 81 AINIAGETSSHAFLLVQA 98 (99)
T ss_dssp EEETTEEEEEEEEEEEEC
T ss_pred EEECCCcEEEEEEEEEec
Confidence 999999999999999863
|
| >1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A | Back alignment and structure |
|---|
Probab=99.66 E-value=9e-16 Score=152.98 Aligned_cols=175 Identities=17% Similarity=0.252 Sum_probs=114.7
Q ss_pred ccCCCeEEEEEEEeecCCC-----CcEEEEEECC--EE---cc---------CCCceEEEEeCcEEEEEEcccCcCCceE
Q psy2166 316 LKDGDSAHFECTLTPVNDP-----ELKVEWFHNG--KP---IF---------HKNRVKMVSDFGFVVMDIAYVQSHDSGE 376 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p-----~~~v~W~~~g--~~---l~---------~~~~~~~~~~~~~~~l~i~~v~~~d~G~ 376 (805)
+.+|+.++|.|.+. +.+ .+.+.|+|+. .. +. ...++.+........|.|.+++.+|+|.
T Consensus 13 v~~G~~v~L~C~~~--~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 90 (247)
T 1svz_A 13 VSLGDQASISCRSS--QTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGI 90 (247)
T ss_dssp ECTTCCEEEEEEES--SCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred ecCCCCEEEEEeCC--CcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHHCEE
Confidence 88999999999997 666 6899999842 21 11 1356776666677789999999999999
Q ss_pred EEEEEEeCceeeE-EEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceE
Q psy2166 377 YVCRAWNKYGEDF-TRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSA 455 (805)
Q Consensus 377 Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (805)
|.|.+.|..+... ..+.|.|..++.... .+
T Consensus 91 Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~---~~---------------------------------------------- 121 (247)
T 1svz_A 91 YYCFQGSHFPPTFGGGTKLEIKGGGGSGG---GG---------------------------------------------- 121 (247)
T ss_dssp EEEEECSSSSCEECCCEEEEEC----------------------------------------------------------
T ss_pred EEEEEccCCccEECCCEEEEEECCccccc---cc----------------------------------------------
Confidence 9999998765322 235666643210000 00
Q ss_pred EEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEEC
Q psy2166 456 HFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYN 535 (805)
Q Consensus 456 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~ 535 (805)
.....++.+....+... +.+|++++|.|.+.+...+.+.+.|+|+
T Consensus 122 ----------------------------------~~~~~~~~~~~~~~~~~-v~~G~~v~L~C~~~~~~~~~~~v~W~k~ 166 (247)
T 1svz_A 122 ----------------------------------SGGGGSEVQLQQSGPEL-KKPGETVKISCKATNYAFTDYSMHWVKQ 166 (247)
T ss_dssp ----------------------------------------CCEEEECCCEE-ECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred ----------------------------------cccccCceEEeCCCcee-ecCCCcEEEEEEEcCcccCCcEEEEEEe
Confidence 00001222222333333 8999999999999942223579999996
Q ss_pred C--EEc------c-----------CCCceEEEe--eCCEEEEEEccCCCCCCEEEEEEEEcC
Q psy2166 536 G--KKL------P-----------HGHRYRTFH--DFGIVILDILYCYEENSGVYECRATNK 576 (805)
Q Consensus 536 g--~~l------~-----------~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~n~ 576 (805)
+ ..+ . ...++.+.. ......|.|.+++.+|+|.|.|.|.|.
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 167 APGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp CTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred CCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 3 211 0 134565543 345678999999999999999999985
|
| >1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=153.57 Aligned_cols=183 Identities=15% Similarity=0.186 Sum_probs=113.9
Q ss_pred CCCceecCCCcEEEEEEEecCCCC-----CceEEEEECC--Eec---C---------CCCceEEEecCcEEEEEEccccc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDP-----NLKIEWIFNG--KPL---E---------LGSRFKTTADFGFVTLDLTEVYD 133 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p-----~~~v~W~k~g--~~i---~---------~~~~~~~~~~~~~~~L~I~~~~~ 133 (805)
+..+.+.+|++++|.|.+. +.+ .+.|.|+|+. ..+ . ...|+.+..+++..+|+|.+++.
T Consensus 22 p~~~~v~~G~~v~L~C~~~--~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 99 (268)
T 1x9q_A 22 PLSLPVSLGDQASISCRSS--QSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKINRVEA 99 (268)
T ss_dssp CSEECCCTTCCEEEEEEES--SCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred CCeEEecCCCCEEEEeEec--CCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEECCCCh
Confidence 3467899999999999998 444 5799999852 211 0 24688877667778999999999
Q ss_pred CCCeEEEEEEEeCCeeE-EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCC-----ceec
Q psy2166 134 RDQGIYTCRAWNLAGET-FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPP-----QFTS 207 (805)
Q Consensus 134 ~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----~~~~ 207 (805)
+|+|.|+|.+.|..+.. .....|.|...+.......+|.... . ...| .+..
T Consensus 100 ~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~----------------------~-~~~~~~~~~v~~~ 156 (268)
T 1x9q_A 100 EDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDA----------------------K-KDDAKKDGGVKLD 156 (268)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEC-----------------------------------------------CGGGCEEE
T ss_pred hHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccc----------------------c-ccccccccceEEE
Confidence 99999999999875422 2234566554321000000000000 0 0000 1122
Q ss_pred ccccccccCCCceEEEEEEEeeCCCC--CeEEEEEEC--CEEc-------------------cCCCcEEEEEEc--CeEE
Q psy2166 208 EFQHLSNLSEGEIAHFEASLIPVGDQ--TMTVEFLYN--GKPI-------------------EASHRIRTVHAF--GMVV 262 (805)
Q Consensus 208 ~~~~~~~v~~g~~~~l~C~~~~~~~p--~~~i~W~k~--g~~l-------------------~~~~~~~~~~~~--~~~~ 262 (805)
.+... .+.+|++++|.|.+. +.+ .+.+.|||+ +..+ ....++...... ....
T Consensus 157 ~~~~~-~v~~G~~v~L~C~~~--~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 233 (268)
T 1x9q_A 157 ETGGG-LVQPGGAMKLSCVTS--GFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVY 233 (268)
T ss_dssp EECCE-EECTTCCEEEEEEEE--SSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEE
T ss_pred CCCce-EecCCCcEEEEEEec--CccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEE
Confidence 22222 488999999999984 443 389999985 2221 112355444332 3578
Q ss_pred EEEcCCCCcccEEEEEEEEcC
Q psy2166 263 LEILGTKIEDTGVYTCRATNK 283 (805)
Q Consensus 263 L~i~~~~~~d~G~Y~C~~~n~ 283 (805)
|.|.+++.+|+|.|+|.+.+.
T Consensus 234 L~I~~v~~~DsG~Y~C~a~~~ 254 (268)
T 1x9q_A 234 LQMNNLRVEDTGIYYCTGASY 254 (268)
T ss_dssp EEECSCCGGGCEEEEEEEEET
T ss_pred EEECCCCHHHCEEEEEEEccC
Confidence 999999999999999999874
|
| >3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.7e-16 Score=157.26 Aligned_cols=155 Identities=15% Similarity=0.134 Sum_probs=97.3
Q ss_pred CCEEEEEeccCCCCCcEEEEEEEEeC---------CcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCee
Q psy2166 624 FGIVILDILYCYEENSGVYECRATNK---------YGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQF 694 (805)
Q Consensus 624 ~~~~~L~i~~~~~~d~G~Y~C~a~n~---------~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~ 694 (805)
++...|.|.+++.+|+|.|.|.+.|. .........|.|...+.... .........+|.+
T Consensus 76 ~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~------------~~~~~~~~~~~~v 143 (280)
T 3fku_X 76 TRTAYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSG------------GGGSGGGGIQPGL 143 (280)
T ss_dssp TTEEEEEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------------------CCCSB
T ss_pred CCEEEEEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccC------------CCCCCceEeeeEE
Confidence 35567999999999999999999987 11122344566653000000 0000001134555
Q ss_pred eecCCcccccCCCCeEEEEEEEeecC-CC-CeEEEEEEC--CEEcc------------CCCCeEEEeeCcEEEEEEcCCC
Q psy2166 695 TSEFQHLSNLSEGEIAHFEASLIPVG-DQ-TMTVEFLYN--GKPIE------------ASHRIRTVHAFGMVVLEILGTK 758 (805)
Q Consensus 695 ~~~~~~~~~v~~G~~~~l~C~~~~~g-~p-~~~v~W~~~--g~~l~------------~~~~~~~~~~~~~~~L~i~~v~ 758 (805)
...+. . .+.+|++++|.|.+. + .+ .+.+.|+|. +..+. ...|+.+..++....|+|.+++
T Consensus 144 ~~~p~-~-~v~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 219 (280)
T 3fku_X 144 TQPPS-V-SKGLRQTATLTCTGN--SNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQ 219 (280)
T ss_dssp BCCSE-E-EECTTCCEEEEEECC--CCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCC
T ss_pred EeCCc-E-EEecCCCEEEEEEec--CCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCC
Confidence 55555 5 899999999999998 6 44 479999982 32221 1356777777778899999999
Q ss_pred CCCCEEEEEEEEcCCcc---EEEEEEEEEEEeCCCcceE
Q psy2166 759 IEDTGVYTCRATNKWGQ---AEISVNLECVVWSPSQTKL 794 (805)
Q Consensus 759 ~~d~G~Y~C~a~N~~G~---~~~~~~l~V~~~~~~~~~~ 794 (805)
.+|+|.|.|.|.|..+. ....+.|+|...++..+.+
T Consensus 220 ~~DsG~Y~C~~~~~~~~~~~~g~~t~l~V~~~~~~~P~v 258 (280)
T 3fku_X 220 PEDEADYYCSTWDSSLSAVVFGGGTKLTVLGQPKAAPSA 258 (280)
T ss_dssp GGGCSEEEEEEEETTTTEEEEBCCCEEEEC---------
T ss_pred HHHCEEEEEEEecCCCCceEECCCEEEEECCCCCCCCcE
Confidence 99999999999998732 3344577776655444333
|
| >1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B | Back alignment and structure |
|---|
Probab=99.66 E-value=7.6e-16 Score=143.13 Aligned_cols=136 Identities=16% Similarity=0.182 Sum_probs=99.8
Q ss_pred CCCeEEEEECCEEccC------------CCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcceEEEEEEEEeeccc
Q psy2166 599 QLPEVEWFYNGKKLPH------------GHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTN 666 (805)
Q Consensus 599 ~~p~v~W~~~g~~l~~------------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~ 666 (805)
|.+.+.|+|++..+.. ..++.+...+ ..|.|.+++.+|+|.|+|.|.|..| ...+.|.|.+++
T Consensus 22 ~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~--~sL~I~~v~~~DsG~Y~C~~~n~~~--~~~~~L~V~~~~- 96 (171)
T 1ccz_A 22 PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVS--GSLTIYNLTSSDEDEYEMESPNITD--TMKFFLYVLEMV- 96 (171)
T ss_dssp CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTT--CCEEECSCCGGGCEEEEEECTTCCS--CEEEEEEEECCC-
T ss_pred CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCC--CeEEECCCChhhCceEEEEEeCCCC--cEEEEEEEECcC-
Confidence 5789999998875421 1233332222 3599999999999999999999888 677888887643
Q ss_pred cccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEee
Q psy2166 667 LILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA 746 (805)
Q Consensus 667 ~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~ 746 (805)
..|.+..... . ..|.|.+. |.|.|.++|+|+|..+....+.
T Consensus 97 -----------------------~~p~i~~~~~---~------~~L~C~~~--~~p~p~i~W~~~~~~l~~~~~~----- 137 (171)
T 1ccz_A 97 -----------------------SKPMIYWECS---N------ATLTCEVL--EGTDVELKLYQGKEHLRSLRQK----- 137 (171)
T ss_dssp -----------------------CCCEEEEETT---T------TEEEEECS--SCSSCEEEEEETTEEEEEESSS-----
T ss_pred -----------------------CCCEEEEecC---C------cEEEEEeC--CCCCcEEEEEECCEECcCCcce-----
Confidence 3466553222 1 27999998 8899999999999988654332
Q ss_pred CcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEE
Q psy2166 747 FGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 747 ~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
.|.+. ..+|+|.|+|.|.|.+|..+.++.|.+
T Consensus 138 ----~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l~c 169 (171)
T 1ccz_A 138 ----TMSYQ--WTNLRAPFKCKAVNRVSQESEMEVVNC 169 (171)
T ss_dssp ----EEEEE--CSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred ----EEEEe--ccCCCceEEEEEEcccCcccceeEEeC
Confidence 24443 377999999999999999888776643
|
| >2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=155.53 Aligned_cols=196 Identities=16% Similarity=0.165 Sum_probs=121.3
Q ss_pred ccccCCCeEEEEEEEeeCCCC--CcEEEEEECC--EEcc-----------------CCCceEEEee--CCEEEEEEccCC
Q psy2166 506 TQLKEGQSAHFEARLTPVTDP--DLVVEWFYNG--KKLP-----------------HGHRYRTFHD--FGIVILDILYCY 562 (805)
Q Consensus 506 ~~v~~G~~v~L~C~v~~~g~p--~~~v~W~~~g--~~l~-----------------~~~~~~~~~~--~~~~~L~i~~v~ 562 (805)
..+.+|++++|.|.+. +.| .+.+.|+|++ ..+. ...|+.+..+ ++...|.|.+++
T Consensus 32 ~~v~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 109 (291)
T 2gki_A 32 ELVKPGASVKMSCKAS--GYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLT 109 (291)
T ss_dssp EEECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCC
T ss_pred EEecCCCCEEEEEecc--CCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCC
Confidence 3489999999999998 555 5789999852 1110 1245554432 346789999999
Q ss_pred CCCCEEEEEEEEcCC-cceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEE
Q psy2166 563 EENSGVYECRATNKY-GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 641 (805)
Q Consensus 563 ~~d~G~Y~C~a~n~~-g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 641 (805)
.+|+|.|.|.+.|.. |.....+ . .+ ..|.+.... +.+
T Consensus 110 ~~DsG~Y~C~~~~~~~g~~~~~~----~------------------~~-----------------~~L~V~~~~--~~~- 147 (291)
T 2gki_A 110 SEDSAVYYCARGAYKRGYAMDYW----G------------------QG-----------------TSVTVSSRG--GGG- 147 (291)
T ss_dssp GGGCEEEEEEEECGGGTTCEEEE----C------------------CC-----------------EEEEECC--------
T ss_pred HHHCEEEEEEEecccccccccee----C------------------CC-----------------cEEEEecCC--ccc-
Confidence 999999999999864 2111000 0 00 002221100 000
Q ss_pred EEEEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecCC
Q psy2166 642 YECRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGD 721 (805)
Q Consensus 642 Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~ 721 (805)
.|.. .+.-. ..+|.+...+... .+.+|++++|.|.+. +.
T Consensus 148 --------~~~~----~~~~~--------------------------~~~~~v~~~p~~~-~v~~G~~v~L~C~~~--~~ 186 (291)
T 2gki_A 148 --------SGGG----GSGGG--------------------------GSDLVMSQSPSSL-AVSAGEKVTMSCKSS--QS 186 (291)
T ss_dssp -------------------------------------------------CCCEECSCSEE-EEETTSCEEEEEEES--SC
T ss_pred --------cccc----cCCCC--------------------------CccceEEcCCCEE-EEcCCCcEEEEEEcC--Cc
Confidence 0000 00000 0234455555556 899999999999998 88
Q ss_pred CCe------EEEEEEC--CEE---cc---------CCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEE-EE
Q psy2166 722 QTM------TVEFLYN--GKP---IE---------ASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI-SV 780 (805)
Q Consensus 722 p~~------~v~W~~~--g~~---l~---------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~-~~ 780 (805)
|.+ .+.|+|+ |.. +. ...++.+..++....|+|.+++.+|+|.|+|.|.|....... -.
T Consensus 187 ~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt 266 (291)
T 2gki_A 187 LFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMYTFGSGT 266 (291)
T ss_dssp CEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred cccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCceEEcCCE
Confidence 876 9999996 321 11 145676666667789999999999999999999996543332 23
Q ss_pred EEEEEE
Q psy2166 781 NLECVV 786 (805)
Q Consensus 781 ~l~V~~ 786 (805)
.|.|..
T Consensus 267 ~l~v~~ 272 (291)
T 2gki_A 267 KLEIKH 272 (291)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 455543
|
| >3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A | Back alignment and structure |
|---|
Probab=99.66 E-value=8.6e-16 Score=152.38 Aligned_cols=174 Identities=11% Similarity=0.040 Sum_probs=116.0
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEE--------------CCEecC---CCCceEEEec-CcEEEEEEcccccC
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--------------NGKPLE---LGSRFKTTAD-FGFVTLDLTEVYDR 134 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--------------~g~~i~---~~~~~~~~~~-~~~~~L~I~~~~~~ 134 (805)
+..+.+.+|+.++|.|.+. .+.+.|.|+| ++.... ...|+.+..+ .+.++|.|.+++.+
T Consensus 9 p~~v~v~~G~~v~L~C~~~---~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~ 85 (240)
T 3q5y_A 9 PRHIIKEKGGRSVLTCIPI---SGHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELE 85 (240)
T ss_dssp CSEEEEETTCCEEEEEECC---TTCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGG
T ss_pred cceeeecCCCcEEEEEEeC---CCCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChh
Confidence 3467899999999999987 3777999999 222111 2357777653 45778999999999
Q ss_pred CCeEEEEEEEeC--C-eeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccccc
Q psy2166 135 DQGIYTCRAWNL--A-GETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQH 211 (805)
Q Consensus 135 D~G~Y~C~a~n~--~-g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 211 (805)
|+|.|+|.+.+. . ........|.|..... ...+|.+......
T Consensus 86 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~-----------------------------------~~~~p~~~~~~~~ 130 (240)
T 3q5y_A 86 DSAMYFCASSLRWGDEQYFGPGTRLTVLEDLR-----------------------------------NVTPPKVSLFEPS 130 (240)
T ss_dssp GCEEEEEEEESSTTBCCEECCCEEEEEESCGG-----------------------------------GCBCCEEEEECCC
T ss_pred HCEEEEEEEccCCCcceEEcCCEEEEEecccc-----------------------------------CCCCCeeEEeCCc
Confidence 999999999832 1 2223344566653110 0133544433222
Q ss_pred ccccCCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCCCcEE---EEEEcCe----EEEEEcCCCCcc-cEEEEEEEEc
Q psy2166 212 LSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRIR---TVHAFGM----VVLEILGTKIED-TGVYTCRATN 282 (805)
Q Consensus 212 ~~~v~~g~~~~l~C~~~~~~~p~~-~i~W~k~g~~l~~~~~~~---~~~~~~~----~~L~i~~~~~~d-~G~Y~C~~~n 282 (805)
...+.+|+.++|.|.+.. ..|.+ .+.|+|+|..+....... ....++. +.|.|.....+| .|.|+|.|.|
T Consensus 131 ~~~~~~g~~v~L~C~~~g-~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~ 209 (240)
T 3q5y_A 131 KAEIANKQKATLVCLARG-FFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQF 209 (240)
T ss_dssp HHHHHHHSEEEEEEEEEE-EBSSCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEE
T ss_pred hhhcccCCceEEEEEEee-EECCCeEEEEEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEc
Confidence 223567999999999853 24544 899999999986543221 1222332 358899888888 7799999998
Q ss_pred CCe
Q psy2166 283 KWG 285 (805)
Q Consensus 283 ~~g 285 (805)
...
T Consensus 210 ~~~ 212 (240)
T 3q5y_A 210 HGL 212 (240)
T ss_dssp CCB
T ss_pred CCC
Confidence 654
|
| >3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=147.79 Aligned_cols=169 Identities=14% Similarity=0.116 Sum_probs=115.1
Q ss_pred CCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec-------------------CCCCceEEEec--CcEEEEEEcc
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL-------------------ELGSRFKTTAD--FGFVTLDLTE 130 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i-------------------~~~~~~~~~~~--~~~~~L~I~~ 130 (805)
..+.+.+|+.|+|.|.+.+...+.+.|.|+|. +... ...+|+.+..+ .+.++|.|.+
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 87 (221)
T 3m8o_H 8 GGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNS 87 (221)
T ss_dssp SCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECS
T ss_pred CCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECC
Confidence 35789999999999999842223679999983 2111 02357777654 4677899999
Q ss_pred cccCCCeEEEEEEEeCC--eeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecc
Q psy2166 131 VYDRDQGIYTCRAWNLA--GETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSE 208 (805)
Q Consensus 131 ~~~~D~G~Y~C~a~n~~--g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 208 (805)
++.+|+|.|.|.+.+.. ........|.|.... ..+|.+...
T Consensus 88 v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~-------------------------------------~~~p~v~~~ 130 (221)
T 3m8o_H 88 LKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSAS-------------------------------------PTSPKVFPL 130 (221)
T ss_dssp CCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCC-------------------------------------CBCCEEEEE
T ss_pred CCHHHCEEEEEEEECCChhheECCCEEEEEecCC-------------------------------------CCCCeEEEe
Confidence 99999999999999863 122233456664211 133444422
Q ss_pred cccccccCCCceEEEEEEEeeCCCCC--eEEEEEECCEEccC----------CCcEEEEEEcCeEEEEEcCCCCcccEEE
Q psy2166 209 FQHLSNLSEGEIAHFEASLIPVGDQT--MTVEFLYNGKPIEA----------SHRIRTVHAFGMVVLEILGTKIEDTGVY 276 (805)
Q Consensus 209 ~~~~~~v~~g~~~~l~C~~~~~~~p~--~~i~W~k~g~~l~~----------~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 276 (805)
.... . .+|+.++|.|.+.. ..|. +.+.|+++|..+.. ...+.. .+.|.|.....+|+|.|
T Consensus 131 ~~~~-~-~~g~~v~L~C~~~~-~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~-----~s~L~i~~~~~~d~g~y 202 (221)
T 3m8o_H 131 SLCS-T-QPDGNVVIACLVQG-FFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTT-----SSQLTLPATQCLAGKSV 202 (221)
T ss_dssp ECCS-C-CCTTEEEEEEEEEE-EBSSCSEEEEESCCSTTCEEEECCCEECSSSSCEEE-----EEEEEEEGGGSCTTCEE
T ss_pred cCcc-c-ccCCCEEEEEEEEe-eECCCCEEEEEEECCEECceEEcCceeeCCCCcEEE-----EEEEEECHHHcCCCCeE
Confidence 2222 1 68999999999853 2554 69999999977631 122211 23699999999999999
Q ss_pred EEEEEcCCeeE
Q psy2166 277 TCRATNKWGQA 287 (805)
Q Consensus 277 ~C~~~n~~g~~ 287 (805)
+|.|.+..+..
T Consensus 203 tC~v~~~~~~~ 213 (221)
T 3m8o_H 203 TCHVKHYTNPS 213 (221)
T ss_dssp EEEEEETTSCC
T ss_pred EEEEEECCCCc
Confidence 99999987543
|
| >1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-15 Score=148.42 Aligned_cols=184 Identities=18% Similarity=0.190 Sum_probs=116.7
Q ss_pred CCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEe---c-------------CCCCceEEEec--CcEEEEEEccccc
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKP---L-------------ELGSRFKTTAD--FGFVTLDLTEVYD 133 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~---i-------------~~~~~~~~~~~--~~~~~L~I~~~~~ 133 (805)
+.+.+.+|+.++|.|.+.+.....+.|.|+|. |.. + ...+|+.+..+ ++.++|+|.+++.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 87 (232)
T 1dn0_B 8 GAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTA 87 (232)
T ss_dssp CCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCc
Confidence 35789999999999999842112578999984 221 1 02357877654 4577999999999
Q ss_pred CCCeEEEEEEEe--CCee----EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceec
Q psy2166 134 RDQGIYTCRAWN--LAGE----TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTS 207 (805)
Q Consensus 134 ~D~G~Y~C~a~n--~~g~----~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 207 (805)
+|+|.|+|.+.+ ..+. ....+.|.|...+ ..+|.+..
T Consensus 88 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~-------------------------------------~~~P~v~~ 130 (232)
T 1dn0_B 88 ADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGS-------------------------------------ASAPTLFP 130 (232)
T ss_dssp GGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSC-------------------------------------CBCCEEEE
T ss_pred ccCEEEEEEEecCCcCCchhhhcccceEEEEccCC-------------------------------------CCCCceEE
Confidence 999999999983 2111 1223467765421 12344432
Q ss_pred ccccccccCCC-ceEEEEEEEeeCCCCCe-EEEEEE-CCEEccCCCcEEEEEEcC----eEEEEEcCCCC--cccEEEEE
Q psy2166 208 EFQHLSNLSEG-EIAHFEASLIPVGDQTM-TVEFLY-NGKPIEASHRIRTVHAFG----MVVLEILGTKI--EDTGVYTC 278 (805)
Q Consensus 208 ~~~~~~~v~~g-~~~~l~C~~~~~~~p~~-~i~W~k-~g~~l~~~~~~~~~~~~~----~~~L~i~~~~~--~d~G~Y~C 278 (805)
..+.. .+.+| +.++|.|.+. ...|.+ .+.|++ +|..+...........++ .+.|.|..... +|.|.|+|
T Consensus 131 ~~p~~-~~~~g~~~v~L~C~~~-g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC 208 (232)
T 1dn0_B 131 LVSCE-NSPSDTSSVAVGCLAQ-DFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVC 208 (232)
T ss_dssp EECC-------CCSEEEEEEEE-EEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEE
T ss_pred ecccc-ccCCCCCcEEEEEEEE-EEeCCCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEE
Confidence 21111 24578 9999999985 234665 999999 998875410000000112 34689988887 88999999
Q ss_pred EEEcCCeeEEEEEEEEEe
Q psy2166 279 RATNKWGQAEISVNLECV 296 (805)
Q Consensus 279 ~~~n~~g~~~~~~~l~v~ 296 (805)
.|.|..+.......+.+.
T Consensus 209 ~v~n~~~~~~~~~~i~~~ 226 (232)
T 1dn0_B 209 KVQHPNGNKEKNVPLPVI 226 (232)
T ss_dssp EEECTTCCEEEEEECCC-
T ss_pred EEEeCCCCcceeEecCCC
Confidence 999998887666665543
|
| >3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=5.1e-16 Score=152.52 Aligned_cols=178 Identities=16% Similarity=0.144 Sum_probs=115.9
Q ss_pred CCCceecCCCcEEEEEEEecCCCCC----ceEEEEEC--CEec----------------CCCCceEEEec--CcEEEEEE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPN----LKIEWIFN--GKPL----------------ELGSRFKTTAD--FGFVTLDL 128 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~----~~v~W~k~--g~~i----------------~~~~~~~~~~~--~~~~~L~I 128 (805)
+..+.+.+|+.++|.|.+. +.+. +.|.|+|+ +..+ ...+|+.+..+ .+..+|.|
T Consensus 7 p~~~~v~~G~~v~L~C~~~--~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 84 (228)
T 3bae_H 7 SGPGLLKPSQTLSLTCSFS--GFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKI 84 (228)
T ss_dssp ECCSEECTTCCEEEEEEEE--SSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEE
T ss_pred CCceeecCCCeEEEEEEEe--CcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEE
Confidence 3467899999999999998 4543 78999984 3221 01347777654 34679999
Q ss_pred cccccCCCeEEEEEEEeCCe------e--E-EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCC
Q psy2166 129 TEVYDRDQGIYTCRAWNLAG------E--T-FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSED 199 (805)
Q Consensus 129 ~~~~~~D~G~Y~C~a~n~~g------~--~-~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (805)
.+++.+|+|.|.|.+.+..| . . ...+.|.|....
T Consensus 85 ~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~------------------------------------- 127 (228)
T 3bae_H 85 TSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAK------------------------------------- 127 (228)
T ss_dssp CSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCC-------------------------------------
T ss_pred cCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCC-------------------------------------
Confidence 99999999999999998653 1 1 123566665311
Q ss_pred CCCCceecccccccccCCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCCCcEEEEEEc---CeEEEEEcCCCCcccEE
Q psy2166 200 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRIRTVHAF---GMVVLEILGTKIEDTGV 275 (805)
Q Consensus 200 ~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~-~i~W~k~g~~l~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~ 275 (805)
..+|.+....+.. .+.+|+.++|.|.+.. ..|.+ .+.|+++|..+...........+ ....|.|.+...+| |.
T Consensus 128 ~~~P~i~~~~~~~-~~~~g~~~~l~C~~~g-~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~ 204 (228)
T 3bae_H 128 TTAPSVYPLAPVC-GDTTGSSVTLGCLVKG-YFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ES 204 (228)
T ss_dssp CBCCEEEEECC------CCSEEEEEEEEEE-EBSSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SC
T ss_pred CCCCEEEEecccc-cccCCCCEEEEEEEcc-EeCCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-Cc
Confidence 1234444332222 2568999999999842 33666 99999998754211111111111 13568999888866 99
Q ss_pred EEEEEEcCCeeEEEEEE
Q psy2166 276 YTCRATNKWGQAEISVN 292 (805)
Q Consensus 276 Y~C~~~n~~g~~~~~~~ 292 (805)
|+|.|.|..+.......
T Consensus 205 YtC~~~n~~~~~~~~~~ 221 (228)
T 3bae_H 205 ITCNVAHPASSTKVDKK 221 (228)
T ss_dssp CEEEEEEGGGTEEEEEE
T ss_pred EEEEEEECCCCCCEEEE
Confidence 99999998887655443
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.8e-16 Score=129.15 Aligned_cols=94 Identities=26% Similarity=0.387 Sum_probs=88.0
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
.+|.|...+.+. .+.+|+.+.|.|.+. |.|.|.+.|+|+|..+..+.++.+..+++...|.|.++..+|+|.|+|.|
T Consensus 5 ~~P~i~~~~~~~-~v~~G~~~~l~C~~~--g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 81 (99)
T 3puc_A 5 SKPVIVTGLQDT-TVSSDSVAKFAVKAT--GEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTV 81 (99)
T ss_dssp EEEEEEECCCCE-EEESSSCEEEEEEEE--EESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred CCCEEEecCccE-EEeCCCcEEEEEEEE--ecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEE
Confidence 578899888888 999999999999998 89999999999999999999999888888889999999999999999999
Q ss_pred EcCCccEEEEEEEEEEE
Q psy2166 770 TNKWGQAEISVNLECVV 786 (805)
Q Consensus 770 ~N~~G~~~~~~~l~V~~ 786 (805)
.|..|....++.|.|..
T Consensus 82 ~n~~g~~~~~~~l~V~~ 98 (99)
T 3puc_A 82 KNSAGSVSSSCKLTIKA 98 (99)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EeCCCcEeEEEEEEEEe
Confidence 99999999999999863
|
| >3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.4e-16 Score=129.79 Aligned_cols=94 Identities=23% Similarity=0.403 Sum_probs=81.9
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCC--CceEEEeeCCEEEEEEccCCCCCCEEEEE
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG--HRYRTFHDFGIVILDILYCYEENSGVYEC 571 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~--~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 571 (805)
.||+|...+.+. .+.+|+.++|.|.+. |.|.|.++|+|||+.|... .++.+...++.+.|.|.+++.+|+|.|+|
T Consensus 4 ~PP~i~~~p~~~-~v~~G~~~~l~C~~~--g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 80 (100)
T 3knb_A 4 IPPKIEALPSDI-SIDEGKVLTVACAFT--GEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTL 80 (100)
T ss_dssp EEEEECCCCSEE-EEETTSEEEEEEEEE--EESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEE
T ss_pred CCCEEEeCCCcE-EEeCCCeEEEEEEEE--EecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEE
Confidence 567777666554 489999999999999 6788999999999999754 36777777888899999999999999999
Q ss_pred EEEcCCcceEEEEEEEEee
Q psy2166 572 RATNKYGSDVTKASLKCVS 590 (805)
Q Consensus 572 ~a~n~~g~~~~~~~l~V~~ 590 (805)
.|.|..|..+.++.|.|..
T Consensus 81 ~a~N~~G~~~~~~~l~V~~ 99 (100)
T 3knb_A 81 SLGNEFGSDSATVNIHIRS 99 (100)
T ss_dssp EEEETTEEEEEEEEEEEEC
T ss_pred EEEECCCEEEEEEEEEEEE
Confidence 9999999999999998864
|
| >1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H | Back alignment and structure |
|---|
Probab=99.66 E-value=6.5e-15 Score=144.00 Aligned_cols=173 Identities=13% Similarity=0.208 Sum_probs=116.3
Q ss_pred ccCCCeEEEEEEEeecCCC--CcEEEEEECC--E---Ecc--------------CCCceEEEEe--CcEEEEEEcccCcC
Q psy2166 316 LKDGDSAHFECTLTPVNDP--ELKVEWFHNG--K---PIF--------------HKNRVKMVSD--FGFVVMDIAYVQSH 372 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p--~~~v~W~~~g--~---~l~--------------~~~~~~~~~~--~~~~~l~i~~v~~~ 372 (805)
+.+|+.++|.|.+. +.+ .+.+.|+|.. . .+. ...++.+..+ .+...|.|.+++.+
T Consensus 12 v~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~ 89 (223)
T 1dee_B 12 VQPGKSLRLSCAAS--GFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAE 89 (223)
T ss_dssp ECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred EcCCCcEEEEEEec--CcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCHH
Confidence 88999999999997 444 4789999842 1 110 1346776654 24678999999999
Q ss_pred CceEEEEEEEeCce----e--eEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecce
Q psy2166 373 DSGEYVCRAWNKYG----E--DFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDV 446 (805)
Q Consensus 373 d~G~Y~C~a~n~~g----~--~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (805)
|+|.|.|.+.+..| . ....+.|.|...
T Consensus 90 D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~----------------------------------------------- 122 (223)
T 1dee_B 90 DTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSG----------------------------------------------- 122 (223)
T ss_dssp GCEEEEEEEESSSSTTCCEEEECCCEEEEECSS-----------------------------------------------
T ss_pred HCEEEEEEEeccccCcccceeecCcEEEEEccC-----------------------------------------------
Confidence 99999999998653 1 112245555311
Q ss_pred eeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCC
Q psy2166 447 TQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDP 526 (805)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p 526 (805)
...+|.+....+... +.+|+.++|.|.+.+ ..|
T Consensus 123 ---------------------------------------------~~~~P~i~~~~~~~~-~~~g~~v~L~C~~~g-~~P 155 (223)
T 1dee_B 123 ---------------------------------------------SASAPTLFPLVSCEN-SNPSSTVAVGCLAQD-FLP 155 (223)
T ss_dssp ---------------------------------------------CCBCCEEEEEECTTC-CCSSSEEEEEEEEEE-EBS
T ss_pred ---------------------------------------------CCCCCEEEEecCCcc-cCCCCcEEEEEEEEE-EeC
Confidence 123455554322222 679999999999995 336
Q ss_pred Cc-EEEEEE-CCEEccCCCceE-EEeeCC---EEEEEEccCCC--CCCEEEEEEEEcCCcceEEEE
Q psy2166 527 DL-VVEWFY-NGKKLPHGHRYR-TFHDFG---IVILDILYCYE--ENSGVYECRATNKYGSDVTKA 584 (805)
Q Consensus 527 ~~-~v~W~~-~g~~l~~~~~~~-~~~~~~---~~~L~i~~v~~--~d~G~Y~C~a~n~~g~~~~~~ 584 (805)
.+ .++|++ ||..+....... ...++. .+.|.|..... +|.|.|+|.|.|..|......
T Consensus 156 ~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~ 221 (223)
T 1dee_B 156 DSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV 221 (223)
T ss_dssp SCCEEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred CCeEEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence 55 999999 998875410000 001111 23588887776 789999999999998876544
|
| >3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-15 Score=149.84 Aligned_cols=193 Identities=13% Similarity=0.138 Sum_probs=117.7
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEECC--EE---c----------cCCCceEEE--EeCcEEEEEEcccCcCCceEEE
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFHNG--KP---I----------FHKNRVKMV--SDFGFVVMDIAYVQSHDSGEYV 378 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~g--~~---l----------~~~~~~~~~--~~~~~~~l~i~~v~~~d~G~Y~ 378 (805)
+.+|+.++|.|.+. +.|.+.+.|+|.. .. + ....++.+. ......+|.|.++..+|+|.|.
T Consensus 15 v~~G~~v~L~C~~~--~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y~ 92 (256)
T 3tf7_C 15 VSEGASLQLRCKYS--YSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSAVYF 92 (256)
T ss_dssp EETTSCEEECCEEE--CSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGCSEEE
T ss_pred ecCCCeEEEEEEeC--CCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccCEEEE
Confidence 88999999999998 6789999999832 11 1 112344443 2245678999999999999999
Q ss_pred EEEEeCcee----eEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCce
Q psy2166 379 CRAWNKYGE----DFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQS 454 (805)
Q Consensus 379 C~a~n~~g~----~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (805)
|.+.|..+. ....+.|.|........ ..+
T Consensus 93 C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~--~~~--------------------------------------------- 125 (256)
T 3tf7_C 93 CAVSAKGTGSKLSFGKGAKLTVSPGGGGSG--GGG--------------------------------------------- 125 (256)
T ss_dssp EEEECTTCTTCEEECCCEEEEEEC--------------------------------------------------------
T ss_pred EEEecCCCccceEECCCeEEEEeCCCCCcC--CCC---------------------------------------------
Confidence 999987542 11234555542100000 000
Q ss_pred EEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEE
Q psy2166 455 AHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFY 534 (805)
Q Consensus 455 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~ 534 (805)
...........+|.+...+... .+.+|++++|.|.+. +. .+.+.|+|
T Consensus 126 -----------------------------~~~~~~~~~~~~~~v~~~p~~~-~v~~G~~v~L~C~~~--~~-~~~v~W~k 172 (256)
T 3tf7_C 126 -----------------------------SGGGGSGGGGSEAAVTQSPRNK-VTVTGENVTLSCRQT--NS-HNYMYWYR 172 (256)
T ss_dssp -----------------------------------------CCEEESCSEE-EEETTCCEEECEEEC--SC-CSEEEEEE
T ss_pred -----------------------------cCcccCCCCcCccEEEecCCEE-EEeCCCcEEEEEEcC--CC-ceEEEEEE
Confidence 0000000012345555544443 378999999999998 44 56999998
Q ss_pred CC--EE---cc------------CCCceEEEe-eCCEEEEEEccCCCCCCEEEEEEEEcCCcceEE--EEEEEEee
Q psy2166 535 NG--KK---LP------------HGHRYRTFH-DFGIVILDILYCYEENSGVYECRATNKYGSDVT--KASLKCVS 590 (805)
Q Consensus 535 ~g--~~---l~------------~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~--~~~l~V~~ 590 (805)
++ .. +. ...++.+.. ......|.|.+++.+|+|.|+|.|.|..|.... -..|.|..
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~fG~gt~l~v~~ 248 (256)
T 3tf7_C 173 QDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQLYFGEGSKLTVLE 248 (256)
T ss_dssp ECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred ECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCccEECCCeEEEEEc
Confidence 32 11 10 123343332 234557999999999999999999998775432 24455554
|
| >2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-16 Score=147.46 Aligned_cols=154 Identities=16% Similarity=0.294 Sum_probs=107.7
Q ss_pred cccCCCeEEEEEEEeecCCCCcEEEEEEC-CEEcc------------CC--CceEEEEeCcEEEEEEcccCcCCceEEEE
Q psy2166 315 GLKDGDSAHFECTLTPVNDPELKVEWFHN-GKPIF------------HK--NRVKMVSDFGFVVMDIAYVQSHDSGEYVC 379 (805)
Q Consensus 315 ~~~~g~~~~l~C~~~~~~~p~~~v~W~~~-g~~l~------------~~--~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C 379 (805)
.+.+|++++|.|.+.+ ..+.+.|.|+|+ +..+. .. .++.+ +.....|.|.+++.+|+|.|+|
T Consensus 10 ~v~~G~~vtL~c~~~~-~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l--~~~~~sL~I~~v~~~D~G~Y~C 86 (180)
T 2dru_A 10 NAITGSNVTLTILKHP-LASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL--DKTNGALRIYNVSKEDRGDYYM 86 (180)
T ss_dssp EEETTSCEEECCCSSC-CCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEE--CTTTCCEEECSCCGGGCEEEEE
T ss_pred EEEeCCCEEEeCCCCC-CCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEE--eCCCccEEEcCCCHHHCeEEEE
Confidence 3789999999998742 344789999994 33221 11 34444 1223369999999999999999
Q ss_pred EEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEE
Q psy2166 380 RAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEA 459 (805)
Q Consensus 380 ~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (805)
.+.+.. .....+.|.|..+
T Consensus 87 ~v~~~~-~~~~~~~L~V~~~------------------------------------------------------------ 105 (180)
T 2dru_A 87 RMLHET-EDQWKITMEVYEM------------------------------------------------------------ 105 (180)
T ss_dssp EEESSS-EEEEEEEEEEECC------------------------------------------------------------
T ss_pred EEEcCC-eEEEEEEEEEECC------------------------------------------------------------
Confidence 998776 5566677777532
Q ss_pred EEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEc
Q psy2166 460 RLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKL 539 (805)
Q Consensus 460 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l 539 (805)
...|.+.. .++.++|.|.+.. | |.|.|+|+++|..+
T Consensus 106 ---------------------------------~~~P~i~~---------~~~~v~L~C~~~~-g-p~p~i~W~~~~~~l 141 (180)
T 2dru_A 106 ---------------------------------VSKPMIYW---------ECSNATLTCEVLE-G-TDVELKLYQGKEHL 141 (180)
T ss_dssp ---------------------------------CCCCEEEE---------EGGGTEEEEECSS-C-TTCEEEEEETTEEE
T ss_pred ---------------------------------CCCCEEEe---------cCCCEEEEEEeCC-C-CCCEEEEEECCeEC
Confidence 12344432 2356999999942 5 88999999999988
Q ss_pred cCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEE
Q psy2166 540 PHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587 (805)
Q Consensus 540 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 587 (805)
.. ..+ ..|.+.. .+|+|.|+|.|.|..|.......+.
T Consensus 142 ~~-------~~~--~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~i~ 178 (180)
T 2dru_A 142 RS-------LRQ--KTMSYQW--TNLRAPFKCKAVNRVSQESEMEVVN 178 (180)
T ss_dssp EE-------ESS--SEEEEEC--SCCSSCEEEEEEETTEEEEEEECCC
T ss_pred cC-------CCC--CEEEEEE--hhcCccEEEEEecCcCccccceeEe
Confidence 51 111 2355532 7899999999999999887766554
|
| >4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D | Back alignment and structure |
|---|
Probab=99.65 E-value=8.1e-16 Score=153.11 Aligned_cols=174 Identities=14% Similarity=0.098 Sum_probs=115.2
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEE--------------CCEecCC----CCceEEEec-CcEEEEEEccccc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--------------NGKPLEL----GSRFKTTAD-FGFVTLDLTEVYD 133 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--------------~g~~i~~----~~~~~~~~~-~~~~~L~I~~~~~ 133 (805)
+..+.+.+|+.++|.| .. +.+.+.|.|+| ++..+.. ..|+.+..+ .+.++|.|.+++.
T Consensus 9 p~~v~v~~G~~v~L~C-~~--~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~ 85 (245)
T 4ei6_B 9 PSHQIIDMGQMVTLNC-DP--VSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTAL 85 (245)
T ss_dssp CSEEEEETTCCEEEEE-EC--CTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCG
T ss_pred CceEEecCCCCEEEEE-Ec--CCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCH
Confidence 3367899999999999 44 57888999998 3322221 167777664 4567999999999
Q ss_pred CCCeEEEEEEEeC----CeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceeccc
Q psy2166 134 RDQGIYTCRAWNL----AGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEF 209 (805)
Q Consensus 134 ~D~G~Y~C~a~n~----~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 209 (805)
+|+|.|+|.+.+. .+.......|.|...... ..+|.+....
T Consensus 86 ~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~-----------------------------------~~~p~~~~~~ 130 (245)
T 4ei6_B 86 EDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKN-----------------------------------VFPPEVAVFE 130 (245)
T ss_dssp GGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGG-----------------------------------CBCCEEEEEC
T ss_pred hHCEEEEEEEccCCCcceEEEcCCcEEEEecccCC-----------------------------------CCCceEEEeC
Confidence 9999999999853 222333455666531100 0234443332
Q ss_pred ccccccCCCceEEEEEEEeeCCCCC-eEEEEEECCEEccCCCcEEEEE-------EcC----eEEEEEcCCCCcc-cEEE
Q psy2166 210 QHLSNLSEGEIAHFEASLIPVGDQT-MTVEFLYNGKPIEASHRIRTVH-------AFG----MVVLEILGTKIED-TGVY 276 (805)
Q Consensus 210 ~~~~~v~~g~~~~l~C~~~~~~~p~-~~i~W~k~g~~l~~~~~~~~~~-------~~~----~~~L~i~~~~~~d-~G~Y 276 (805)
.....+.+|+.++|.|.+.. ..|. ..+.|+++|..+.......... .++ ...|.|.....+| +|.|
T Consensus 131 ~~~~~~~~g~~v~l~C~~~g-~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~y 209 (245)
T 4ei6_B 131 PSEAEISHTQKATLVCLATG-FYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHF 209 (245)
T ss_dssp CCHHHHHHHSEEEEEEEEEE-EBSSCEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEE
T ss_pred CCcccccCCCceEEEEEEee-EeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeE
Confidence 22223567999999999843 2444 4999999999987543211100 122 2458888888888 9999
Q ss_pred EEEEEcCCe
Q psy2166 277 TCRATNKWG 285 (805)
Q Consensus 277 ~C~~~n~~g 285 (805)
+|.|.|...
T Consensus 210 tC~v~~~~l 218 (245)
T 4ei6_B 210 RCQVQFYGL 218 (245)
T ss_dssp EEEEEECCB
T ss_pred EEEEEECCC
Confidence 999998654
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A | Back alignment and structure |
|---|
Probab=99.65 E-value=6e-16 Score=127.61 Aligned_cols=90 Identities=14% Similarity=0.225 Sum_probs=78.9
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECC--EEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG--KPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g--~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
+|.|...+.+. .+.+|+.+.|.|.+. |.|.|.|+|+|+| ..+.... .+....+...|.|.++..+|+|.|+|.
T Consensus 2 ~P~i~~~~~~~-~v~~G~~~~l~C~~~--g~P~p~i~W~k~~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 76 (93)
T 1wit_A 2 KPKILTASRKI-KIKAGFTHNLEVDFI--GAPDPTATWTVGDSGAALAPEL--LVDAKSSTTSIFFPSAKRADSGNYKLK 76 (93)
T ss_dssp CCEECCCCCEE-EECTTBCCEEEEEEE--CCSSCEEEEECSTTTCBCSTTS--EEEEETTEEEEECTTBCGGGCEEEEEE
T ss_pred CCeEEcCCCce-EEeCCCEEEEEEEEE--EcCCCEEEEEECCCCcccCCcE--EEEecCCEEEEEECCCChhcCEEEEEE
Confidence 68887777777 999999999999999 9999999999999 8886653 334456667899999999999999999
Q ss_pred EEcCCccEEEEEEEEEE
Q psy2166 769 ATNKWGQAEISVNLECV 785 (805)
Q Consensus 769 a~N~~G~~~~~~~l~V~ 785 (805)
|.|..|..+.++.|.|+
T Consensus 77 a~N~~G~~~~~~~l~V~ 93 (93)
T 1wit_A 77 VKNELGEDEAIFEVIVQ 93 (93)
T ss_dssp EEETTEEEEEEEEEEEC
T ss_pred EEcCCCeEEEEEEEEEC
Confidence 99999999999998874
|
| >1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-15 Score=148.09 Aligned_cols=82 Identities=15% Similarity=0.166 Sum_probs=54.7
Q ss_pred ccCCC-CeEEEEEEEeecCC-CCe-EEEEEE-CCEEccCCCCeEEEeeCc----EEEEEEcCCCC--CCCEEEEEEEEcC
Q psy2166 703 NLSEG-EIAHFEASLIPVGD-QTM-TVEFLY-NGKPIEASHRIRTVHAFG----MVVLEILGTKI--EDTGVYTCRATNK 772 (805)
Q Consensus 703 ~v~~G-~~~~l~C~~~~~g~-p~~-~v~W~~-~g~~l~~~~~~~~~~~~~----~~~L~i~~v~~--~d~G~Y~C~a~N~ 772 (805)
.+..| +.++|.|.+. |. |.+ .|+|++ ||+.+...........++ ...|.|..+.. +|.|.|+|.|.|.
T Consensus 136 ~~~~g~~~v~L~C~~~--g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~ 213 (232)
T 1dn0_B 136 NSPSDTSSVAVGCLAQ--DFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHP 213 (232)
T ss_dssp -----CCSEEEEEEEE--EEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECT
T ss_pred ccCCCCCcEEEEEEEE--EEeCCCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeC
Confidence 35578 9999999998 54 776 999999 998875410000000112 23689998887 8999999999999
Q ss_pred CccEEEEEEEEEEE
Q psy2166 773 WGQAEISVNLECVV 786 (805)
Q Consensus 773 ~G~~~~~~~l~V~~ 786 (805)
.|.......+.|..
T Consensus 214 ~~~~~~~~~i~~~~ 227 (232)
T 1dn0_B 214 NGNKEKNVPLPVIA 227 (232)
T ss_dssp TCCEEEEEECCC--
T ss_pred CCCcceeEecCCCC
Confidence 99887777776654
|
| >3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=153.77 Aligned_cols=176 Identities=13% Similarity=0.072 Sum_probs=115.7
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------------CCC----CceEEEec-CcEEEEEEcccc
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------------ELG----SRFKTTAD-FGFVTLDLTEVY 132 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------------~~~----~~~~~~~~-~~~~~L~I~~~~ 132 (805)
.+..+.+.+|++++|.|.+. .+.+.|.|+| ++..+ ... +|+.+..+ ++..+|.|.+++
T Consensus 32 ~p~~v~v~~G~~v~L~C~~~---~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~ 108 (268)
T 3pl6_D 32 TPSNKVTEKGKYVELRCDPI---SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTE 108 (268)
T ss_dssp CCSEEEEETTCCEEEEEBCB---TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCC
T ss_pred CCCEEEecCCCCEEEEEEeC---CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCC
Confidence 34467899999999999986 5678999999 22211 111 67777653 346789999999
Q ss_pred cCCCeEEEEEEEeC--CeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccc
Q psy2166 133 DRDQGIYTCRAWNL--AGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQ 210 (805)
Q Consensus 133 ~~D~G~Y~C~a~n~--~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 210 (805)
.+|+|.|+|.+.+. .+.......|.|...... ..+|.+.....
T Consensus 109 ~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~-----------------------------------~~~P~v~~~~~ 153 (268)
T 3pl6_D 109 RGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKN-----------------------------------VFPPEVAVFEP 153 (268)
T ss_dssp GGGCEEEEEEEESSSSSCEECCCEEEEEESCGGG-----------------------------------CBCCEEEEECC
T ss_pred cccCEEEEEEEecCCCceeeCCcEEEEEecCccc-----------------------------------ccCCceEEeCC
Confidence 99999999999974 233333455666542110 12354443322
Q ss_pred cccccCCCceEEEEEEEeeCCCCC-eEEEEEECCEEccCCCcEEEE-------EEcC----eEEEEEcCCCCcc-cEEEE
Q psy2166 211 HLSNLSEGEIAHFEASLIPVGDQT-MTVEFLYNGKPIEASHRIRTV-------HAFG----MVVLEILGTKIED-TGVYT 277 (805)
Q Consensus 211 ~~~~v~~g~~~~l~C~~~~~~~p~-~~i~W~k~g~~l~~~~~~~~~-------~~~~----~~~L~i~~~~~~d-~G~Y~ 277 (805)
....+.+|+.++|.|.+.. ..|. ..+.|+|+|..+......... ..++ ...|.|.....+| +|.|+
T Consensus 154 ~~~~~~~g~~v~L~C~~~g-~~p~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~Yt 232 (268)
T 3pl6_D 154 SEAEISHTQKATLVCLATG-FYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFR 232 (268)
T ss_dssp CHHHHHHHSEEEEEEEEEE-EBSSCEEEEEEESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEE
T ss_pred CcccccCCCceEEEEEECc-ccCCCeEEEEEECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEE
Confidence 2223567999999999853 2343 399999999988653211100 0111 2467888777777 99999
Q ss_pred EEEEcCCee
Q psy2166 278 CRATNKWGQ 286 (805)
Q Consensus 278 C~~~n~~g~ 286 (805)
|.|.|....
T Consensus 233 C~v~~~~l~ 241 (268)
T 3pl6_D 233 CQVQFYGLS 241 (268)
T ss_dssp EEEEECCBC
T ss_pred EEEEcCCCC
Confidence 999987543
|
| >1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H* | Back alignment and structure |
|---|
Probab=99.65 E-value=8.7e-16 Score=150.50 Aligned_cols=169 Identities=14% Similarity=0.155 Sum_probs=114.0
Q ss_pred ccCCCeEEEEEEEeecCCC--CcEEEEEECC--EEc-----------------cCCCceEEEEe--CcEEEEEEcccCcC
Q psy2166 316 LKDGDSAHFECTLTPVNDP--ELKVEWFHNG--KPI-----------------FHKNRVKMVSD--FGFVVMDIAYVQSH 372 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p--~~~v~W~~~g--~~l-----------------~~~~~~~~~~~--~~~~~l~i~~v~~~ 372 (805)
+.+|++++|.|.+. +.+ .+.+.|+|+. ..+ ....++.+..+ .+...|.|.+++.+
T Consensus 12 v~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~ 89 (225)
T 1op3_H 12 VKAGGSLILSCGVS--NFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVE 89 (225)
T ss_dssp EETTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred ecCCCCEEEEEEec--CcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCChh
Confidence 78999999999997 555 6789999852 211 01346666654 35678999999999
Q ss_pred CceEEEEEEEeCce-----e---eEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeec
Q psy2166 373 DSGEYVCRAWNKYG-----E---DFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQIS 444 (805)
Q Consensus 373 d~G~Y~C~a~n~~g-----~---~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (805)
|+|.|.|.+.|..| . ....+.|.|...+
T Consensus 90 D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~-------------------------------------------- 125 (225)
T 1op3_H 90 DTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPAS-------------------------------------------- 125 (225)
T ss_dssp GCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCS--------------------------------------------
T ss_pred hCEEEEEEEecCCCccccccceeecCCEEEecccCC--------------------------------------------
Confidence 99999999998764 1 1123456654210
Q ss_pred ceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCC
Q psy2166 445 DVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVT 524 (805)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g 524 (805)
..+|.+....+... +.+|+.++|.|.+.+ .
T Consensus 126 ------------------------------------------------~~~P~v~~~~~~~~-~~~g~~v~L~C~~~g-~ 155 (225)
T 1op3_H 126 ------------------------------------------------TKGPSVFPLAPSSK-STSGGTAALGCLVKD-Y 155 (225)
T ss_dssp ------------------------------------------------CBCCEEEEECCCTT-CCCCCEEEEEEEEEE-E
T ss_pred ------------------------------------------------CcCCeEEEeccccc-ccCCCcEEEEEEEEe-E
Confidence 23455544333322 678999999999995 2
Q ss_pred CCCc-EEEEEECCEEccCC-CceEEEeeCC---EEEEEEccCCCCCCEEEEEEEEcCCcceE
Q psy2166 525 DPDL-VVEWFYNGKKLPHG-HRYRTFHDFG---IVILDILYCYEENSGVYECRATNKYGSDV 581 (805)
Q Consensus 525 ~p~~-~v~W~~~g~~l~~~-~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 581 (805)
.|.+ .|+|+++|..+... .......++. .+.|.|..+..+| |.|+|.|.|..+...
T Consensus 156 ~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~ 216 (225)
T 1op3_H 156 FPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK 216 (225)
T ss_dssp BSSCCEEECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred ECCCeEEEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence 3655 99999999764211 0001111121 2359999988888 999999999776544
|
| >3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.4e-17 Score=160.96 Aligned_cols=167 Identities=18% Similarity=0.235 Sum_probs=95.8
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEECC--EEc------------cCCCceEEEEeCcEEEEEEcccCcCCceEEEEEE
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFHNG--KPI------------FHKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRA 381 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~g--~~l------------~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a 381 (805)
+.+|++++|.|.+. +.+.+.+.|+|++ ..+ ....++.+...++...|.|.+++.+|+|.|.|.+
T Consensus 35 v~~G~~v~L~C~~~--~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~ 112 (233)
T 3bqu_C 35 MSIGEKVTIRCITS--TDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVADYYCLQ 112 (233)
T ss_dssp ------CCEEEEEE--EEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCSEEEEEE
T ss_pred EecCCCEEEEEecC--CcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCEEEEEEE
Confidence 88999999999997 5566789999853 211 0123444444445568999999999999999999
Q ss_pred EeCceeeEE-EEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEE
Q psy2166 382 WNKYGEDFT-RATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEAR 460 (805)
Q Consensus 382 ~n~~g~~~~-~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (805)
.|..+.... ...|.|..
T Consensus 113 ~~~~~~~~~~~~~l~V~~-------------------------------------------------------------- 130 (233)
T 3bqu_C 113 SDNLPYTFGGGTNLEIKR-------------------------------------------------------------- 130 (233)
T ss_dssp CSSSSCCBCCCCBC---C--------------------------------------------------------------
T ss_pred ecCCceeecCCEEEEEeC--------------------------------------------------------------
Confidence 886542211 12233211
Q ss_pred EeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCC-cEEEEEECCEEc
Q psy2166 461 LTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPD-LVVEWFYNGKKL 539 (805)
Q Consensus 461 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~-~~v~W~~~g~~l 539 (805)
...+|.+....+... +.+|+.++|.|.+.+. .|. +.|+|+|||..+
T Consensus 131 -------------------------------~~~~p~v~~~~~~~~-~~~g~~v~L~C~~~g~-~p~~~~v~W~k~g~~~ 177 (233)
T 3bqu_C 131 -------------------------------ADAAPTVSIFPPSSE-QLTSGGASVVCFLNNF-YPKDINVKWKIDGSER 177 (233)
T ss_dssp -------------------------------CCBCCEEEEECCCHH-HHHTTEEEEEEEEEEE-BSSCEEEEEEEC----
T ss_pred -------------------------------CCCCCEEEEeCCCHH-hhcCCceEEEEEEccc-cCCceEEEEEECCeeC
Confidence 123677766554443 4479999999999963 344 489999999988
Q ss_pred cCCCceE--EE--eeC---CEEEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 540 PHGHRYR--TF--HDF---GIVILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 540 ~~~~~~~--~~--~~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
..+.... .. .++ ..+.|.|..+..+|+|.|+|.|.|....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 224 (233)
T 3bqu_C 178 QNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 224 (233)
T ss_dssp -CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred CCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 6541111 01 111 1346899998889999999999997544
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.1e-16 Score=132.19 Aligned_cols=101 Identities=22% Similarity=0.270 Sum_probs=88.3
Q ss_pred CCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccC-CCCeEEEeeC-cEEEEEEcCCCCCCCEEE
Q psy2166 688 DGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEA-SHRIRTVHAF-GMVVLEILGTKIEDTGVY 765 (805)
Q Consensus 688 ~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~-~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y 765 (805)
...+|.|...+.+. .+.+|+.+.|.|.+. |.|.|.|.|+|+|..+.. ..++.+..++ +..+|.|.++..+|+|.|
T Consensus 12 ~~~~p~f~~~p~~~-~v~~G~~v~L~C~~~--g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 88 (116)
T 2kkq_A 12 HKRAPMFIYKPQSK-KVLEGDSVKLECQIS--AIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWY 88 (116)
T ss_dssp CCBCCCBSSCCCCE-EEETTEEEEEEEEBC--CBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEE
T ss_pred CCCCCeEEeCCCcE-EEeCCCcEEEEEEEe--ccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEE
Confidence 34689999999998 999999999999998 999999999999999885 5677765544 566899999999999999
Q ss_pred EEEEEcCCccEEEEEEEEEEEeCCCc
Q psy2166 766 TCRATNKWGQAEISVNLECVVWSPSQ 791 (805)
Q Consensus 766 ~C~a~N~~G~~~~~~~l~V~~~~~~~ 791 (805)
+|.|.|..|....++.|.|...|..+
T Consensus 89 ~C~a~N~~G~~~~~~~l~V~~~p~~~ 114 (116)
T 2kkq_A 89 TVSAVNEAGVTTCNTRLDVTARPNQT 114 (116)
T ss_dssp EEEEEETTEEEEEEEEEEEECCSCCC
T ss_pred EEEEEcCCCeEEEEEEEEEeCCCCCC
Confidence 99999999999999999998765543
|
| >1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.6e-15 Score=147.91 Aligned_cols=186 Identities=13% Similarity=0.115 Sum_probs=117.3
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEECC--Ee---c-----------C---CCCceEEEecC--cEEEEEEcc
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG--KP---L-----------E---LGSRFKTTADF--GFVTLDLTE 130 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g--~~---i-----------~---~~~~~~~~~~~--~~~~L~I~~ 130 (805)
.+..+.+.+|+.++|.|.+.+...+.+.|.|+|+. .. + . ..+|+.+..+. +..+|.|.+
T Consensus 7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 86 (242)
T 1hxm_B 7 PQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHN 86 (242)
T ss_dssp CCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECS
T ss_pred CCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECC
Confidence 34467899999999999998421266799999842 21 1 0 34677776543 577999999
Q ss_pred cccCCCeEEEEEEEeCCe-----e--EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCC
Q psy2166 131 VYDRDQGIYTCRAWNLAG-----E--TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPP 203 (805)
Q Consensus 131 ~~~~D~G~Y~C~a~n~~g-----~--~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 203 (805)
++.+|+|.|.|.+.+... . ......|.|..++... ..+|
T Consensus 87 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~----------------------------------~~~p 132 (242)
T 1hxm_B 87 VEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDA----------------------------------DVSP 132 (242)
T ss_dssp CCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCS----------------------------------CCSC
T ss_pred CCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCC----------------------------------CcCC
Confidence 999999999999987521 1 1123567775432100 0112
Q ss_pred ceecccccccccCCCceEEEEEEEeeCCCCC-eEEEEEECCE-EccCCCcEEEEEEcC----eEEEEEcCCCCcccEEEE
Q psy2166 204 QFTSEFQHLSNLSEGEIAHFEASLIPVGDQT-MTVEFLYNGK-PIEASHRIRTVHAFG----MVVLEILGTKIEDTGVYT 277 (805)
Q Consensus 204 ~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~-~~i~W~k~g~-~l~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~ 277 (805)
......+....+.+|+.++|.|.+.. ..|. +.+.|+++|. .+...........++ .+.|.|.+... | |.|+
T Consensus 133 ~~~v~~p~~~~~~~g~~v~L~C~~~g-~~P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~ 209 (242)
T 1hxm_B 133 KPTIFLPSIAETKLQKAGTYLCLLEK-FFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHR 209 (242)
T ss_dssp BCCCCCCCGGGGGSSSCEEEEEEEEE-ESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEE
T ss_pred CceEECCChhhcccCCCceEEEEEee-EECCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEE
Confidence 21111111223668999999999852 3354 8999999987 564321000111122 24788877664 5 9999
Q ss_pred EEEEcCCeeEEEEEEEE
Q psy2166 278 CRATNKWGQAEISVNLE 294 (805)
Q Consensus 278 C~~~n~~g~~~~~~~l~ 294 (805)
|.|.|..+.......+.
T Consensus 210 C~v~n~~~~~~~~~~~~ 226 (242)
T 1hxm_B 210 CIVRHENNKNGVDQEII 226 (242)
T ss_dssp EEEEETTSGGGSCEEEE
T ss_pred EEEEeCCCCCCceeEee
Confidence 99999887654444443
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-15 Score=124.75 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=80.2
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
.+|.|...+.+. .+.+|+.+.|.|.+. + |++.|+|+|||+++..+.++.+..+++...|.|.++..+|+|.|+|.|
T Consensus 4 ~~~~~~~~~~~~-~v~~G~~v~l~C~v~--~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a 79 (93)
T 1waa_A 4 ALIEVEKPLYGV-EVFVGETAHFEIELS--E-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQA 79 (93)
T ss_dssp CCCCEEECCCCE-EEETTSCEEEEEEES--S-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred CCcEeeccCcce-EEeCCCCEEEEEEEC--C-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEE
Confidence 689999999999 999999999999997 6 457899999999999999999988888889999999999999999999
Q ss_pred EcCCccEEEEEEEEEE
Q psy2166 770 TNKWGQAEISVNLECV 785 (805)
Q Consensus 770 ~N~~G~~~~~~~l~V~ 785 (805)
.| ...+++|+|+
T Consensus 80 ~n----~~~sa~L~V~ 91 (93)
T 1waa_A 80 AN----TKSAANLKVK 91 (93)
T ss_dssp TT----EEEEEEEEEE
T ss_pred CC----CcEEEEEEEE
Confidence 88 4578888886
|
| >4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=9.5e-16 Score=150.51 Aligned_cols=203 Identities=15% Similarity=0.150 Sum_probs=111.3
Q ss_pred EEEEEEEEcCCeeEEEEEEEEEeccCCCCCCeEEecCCCccc-ccCCCeEEEEEEEeecCC--C-CcEEEEEECCEEccC
Q psy2166 274 GVYTCRATNKWGQAEISVNLECVDKSKGQPPKFTSHIKSLEG-LKDGDSAHFECTLTPVND--P-ELKVEWFHNGKPIFH 349 (805)
Q Consensus 274 G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~-~~~g~~~~l~C~~~~~~~--p-~~~v~W~~~g~~l~~ 349 (805)
|.|.|.+.+..+. ......+ .+|.+...+..... +..|+.++|.|.+.+ .. | ...|+|++||..+..
T Consensus 1 ~~~~~~~~~~~~~--c~~~~~~------~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g-~~p~P~~i~v~W~k~g~~l~~ 71 (240)
T 4acp_A 1 GTKSCDKTHTCPP--CPAPELL------GGPSVFLFPPKPKDTLMISRTPEVTCVVVD-VSHEDPEVKFNWYVDGVEVHN 71 (240)
T ss_dssp ------------------------------CEEEEECCCHHHHHSSSSCCEEEEEEES-CCC--CCCEEEEEETTEEECC
T ss_pred CceeeeeeecCCC--CCccccC------CCCEEEEECcChHHhcccCCCcEEEEEEec-cccCCCccEEEEEECCcccCC
Confidence 7899999986553 2211111 34444444444333 557999999999984 23 3 458999999998753
Q ss_pred CCce--EEEEeC---cEEEEEEcccCcCCceEEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCC
Q psy2166 350 KNRV--KMVSDF---GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQ 424 (805)
Q Consensus 350 ~~~~--~~~~~~---~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 424 (805)
.... ....++ ....|.|.....+|.|.|+|.|.|..+.......+..
T Consensus 72 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~---------------------------- 123 (240)
T 4acp_A 72 AKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISK---------------------------- 123 (240)
T ss_dssp CEECCCEEC---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECC----------------------------
T ss_pred ceeccceECCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccc----------------------------
Confidence 2110 011111 1135888877788899999999998764322222211
Q ss_pred CCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCC
Q psy2166 425 QPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISD 504 (805)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 504 (805)
......+|.+.+..+.
T Consensus 124 ----------------------------------------------------------------~~~~~~~P~V~v~~~~ 139 (240)
T 4acp_A 124 ----------------------------------------------------------------AKGQPREPQVYTLPPS 139 (240)
T ss_dssp ----------------------------------------------------------------CCSCCBCCEEEEECCC
T ss_pred ----------------------------------------------------------------cCCCCCCCEEEEECCC
Confidence 0112467888776655
Q ss_pred cccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc--eEEEeeCC---EEEEEEccCCCCCCEEEEEEEEcCCc
Q psy2166 505 VTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR--YRTFHDFG---IVILDILYCYEENSGVYECRATNKYG 578 (805)
Q Consensus 505 ~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g 578 (805)
.. ..+|+.++|.|.+.++..+...++|+|||+.+..... .....++. .+.|.|......|.|.|+|.|.|..-
T Consensus 140 ~~-~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h~~l 217 (240)
T 4acp_A 140 RD-ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL 217 (240)
T ss_dssp GG-GGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred hH-HhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEECCC
Confidence 44 3359999999999964333459999999998753211 11111222 23577776555688999999998753
|
| >2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.5e-16 Score=150.69 Aligned_cols=184 Identities=9% Similarity=0.024 Sum_probs=117.0
Q ss_pred CCCeEEecCCCCceecCCCcEEEEEEEecCCCCC--ceEEEEECCEec-CCCCceEEE-ecC---cEEEEEEcccccCCC
Q psy2166 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPN--LKIEWIFNGKPL-ELGSRFKTT-ADF---GFVTLDLTEVYDRDQ 136 (805)
Q Consensus 64 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~--~~v~W~k~g~~i-~~~~~~~~~-~~~---~~~~L~I~~~~~~D~ 136 (805)
.+|.+.+..+....+.+|+.++|.|.+.+. .|. ..|+|++||..+ ......... .++ ...+|.|.+++.+|+
T Consensus 11 ~~P~v~~~~p~~~~v~~G~~v~L~C~~~g~-~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~ 89 (231)
T 2w59_A 11 SPIQLYAIPPSPGELYISLDAKLRCLVVNL-PSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSG 89 (231)
T ss_dssp -CCEEEEECCCHHHHHTSCCCEEEEEEEEE-SCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTT
T ss_pred CCCEEEEeCcChhhcccCCceEEEEEEeCc-cCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCC
Confidence 356555445556778899999999999842 453 499999999887 332222211 222 134799999999999
Q ss_pred eEEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccC
Q psy2166 137 GIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLS 216 (805)
Q Consensus 137 G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~ 216 (805)
|.|+|.|.|..+... ..+.|..... ...+|.+....+....+
T Consensus 90 g~Y~C~~~~~~~~~~--~~~~v~~~~~-----------------------------------~~~~P~v~v~~~~~~~~- 131 (231)
T 2w59_A 90 ERFTCTVQHEELPLP--LSKSVYRNTG-----------------------------------PTTPPLIYPFAPHPEEL- 131 (231)
T ss_dssp CCEEEEEECTTCSSC--EEEEECCCCS-----------------------------------CCBCCEEEEECCCGGGG-
T ss_pred CEEEEEEEcCCCCCc--eEEEEecCCC-----------------------------------CCcCCEEEEeCCCHHHh-
Confidence 999999999865432 2333322100 01234444332222123
Q ss_pred CCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEE---EEE--------Ec-C----eEEEEEcCCCCcccEEEEEEE
Q psy2166 217 EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR---TVH--------AF-G----MVVLEILGTKIEDTGVYTCRA 280 (805)
Q Consensus 217 ~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~---~~~--------~~-~----~~~L~i~~~~~~d~G~Y~C~~ 280 (805)
.+..++|.|.+.....+.+.|.|+|+|..+....... ... .+ + .+.|.|.....+|.|.|+|.|
T Consensus 132 ~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v 211 (231)
T 2w59_A 132 SLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMA 211 (231)
T ss_dssp GSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEE
T ss_pred ccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEE
Confidence 3557999999853222358999999999987553111 111 22 2 256888888888899999999
Q ss_pred EcCCee
Q psy2166 281 TNKWGQ 286 (805)
Q Consensus 281 ~n~~g~ 286 (805)
.|....
T Consensus 212 ~n~~l~ 217 (231)
T 2w59_A 212 VHEALP 217 (231)
T ss_dssp ECTTST
T ss_pred EcCCCC
Confidence 997653
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.4e-16 Score=128.77 Aligned_cols=92 Identities=14% Similarity=0.247 Sum_probs=83.6
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
.||.|...+.+. .+.+|+++.|.|.+ .|.|.|+|+|||+.+..+.++.+..+++...|.|.++..+|+|.|+|.|
T Consensus 6 ~p~~~~~~~~~~-~v~~G~~v~l~C~v----~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a 80 (100)
T 2yuz_A 6 SGLKILTPLTDQ-TVNLGKEICLKCEI----SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAP 80 (100)
T ss_dssp CCCCCSBCCCCE-EEETTSCCCEEEEC----SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEE
T ss_pred CCCEEeccCCce-EEcCCCCEEEEEEe----CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEE
Confidence 578999999999 99999999999997 5888999999999999999999888888889999999999999999999
Q ss_pred EcCCccEEEEEEEEEEEeC
Q psy2166 770 TNKWGQAEISVNLECVVWS 788 (805)
Q Consensus 770 ~N~~G~~~~~~~l~V~~~~ 788 (805)
.|. ..+.++.|+|...|
T Consensus 81 ~N~--~~~~~a~L~V~~~P 97 (100)
T 2yuz_A 81 DAY--NVTLPAKVHVISGP 97 (100)
T ss_dssp SSS--CCCEEEEEEEECCS
T ss_pred cCC--CeeEEEEEEEeCCC
Confidence 998 67788899987543
|
| >2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-15 Score=150.52 Aligned_cols=183 Identities=11% Similarity=0.091 Sum_probs=116.8
Q ss_pred CCeEEecCCCcccccCCCeEEEEEEEeecCCCC--cEEEEEECCEEc-cCCCceEEEEeCc----EEEEEEcccCcCCce
Q psy2166 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE--LKVEWFHNGKPI-FHKNRVKMVSDFG----FVVMDIAYVQSHDSG 375 (805)
Q Consensus 303 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~--~~v~W~~~g~~l-~~~~~~~~~~~~~----~~~l~i~~v~~~d~G 375 (805)
+|.+.........+.+|+.++|.|.+.+ ..|. ..|+|+++|+.+ ...........++ ...|.|.++..+|.|
T Consensus 12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g-~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g 90 (231)
T 2w59_A 12 PIQLYAIPPSPGELYISLDAKLRCLVVN-LPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGE 90 (231)
T ss_dssp CCEEEEECCCHHHHHTSCCCEEEEEEEE-ESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTC
T ss_pred CCEEEEeCcChhhcccCCceEEEEEEeC-ccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCC
Confidence 4444433233333779999999999984 3463 499999999877 3322211111111 236999999999999
Q ss_pred EEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceE
Q psy2166 376 EYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSA 455 (805)
Q Consensus 376 ~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (805)
.|+|.|.|..+.. ...+.|....
T Consensus 91 ~Y~C~~~~~~~~~--~~~~~v~~~~------------------------------------------------------- 113 (231)
T 2w59_A 91 RFTCTVQHEELPL--PLSKSVYRNT------------------------------------------------------- 113 (231)
T ss_dssp CEEEEEECTTCSS--CEEEEECCCC-------------------------------------------------------
T ss_pred EEEEEEEcCCCCC--ceEEEEecCC-------------------------------------------------------
Confidence 9999999987642 2233331100
Q ss_pred EEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEEC
Q psy2166 456 HFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYN 535 (805)
Q Consensus 456 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~ 535 (805)
....+|.+.+..+....+. |..++|.|.+.++..+.+.|+|+||
T Consensus 114 -----------------------------------~~~~~P~v~v~~~~~~~~~-~~~~~L~C~~~g~~P~~~~v~W~k~ 157 (231)
T 2w59_A 114 -----------------------------------GPTTPPLIYPFAPHPEELS-LSRVTLSCLVRGFRPRDIEIRWLRD 157 (231)
T ss_dssp -----------------------------------SCCBCCEEEEECCCGGGGG-SSEEEEEEEEEEEBSSCCEEEEEET
T ss_pred -----------------------------------CCCcCCEEEEeCCCHHHhc-cCceEEEEEEEeccCCCcEEEEEEC
Confidence 0124566655443333233 5579999999964234589999999
Q ss_pred CEEccCCCceE---EE---------ee-CC---EEEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 536 GKKLPHGHRYR---TF---------HD-FG---IVILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 536 g~~l~~~~~~~---~~---------~~-~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
|+.+..+.... .. .+ +. .+.|.|.....+|.|.|+|.|.|....
T Consensus 158 g~~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~ 217 (231)
T 2w59_A 158 HRAVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALP 217 (231)
T ss_dssp TEECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTST
T ss_pred CEECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCC
Confidence 99986543111 11 22 22 246888887778899999999998754
|
| >3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-15 Score=151.45 Aligned_cols=183 Identities=10% Similarity=0.065 Sum_probs=117.9
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEECC--E---ec--------------CCCCceEEEec--CcEEEEEEccc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG--K---PL--------------ELGSRFKTTAD--FGFVTLDLTEV 131 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g--~---~i--------------~~~~~~~~~~~--~~~~~L~I~~~ 131 (805)
+..+.+.+|++++|.|.+.+...+...+.|+|.. . .+ ...+|+.+..+ .+.++|+|.++
T Consensus 7 p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 86 (253)
T 3liz_H 7 SGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSL 86 (253)
T ss_dssp ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSC
T ss_pred CCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCC
Confidence 3467899999999999998422345689999832 1 11 12357777654 36778999999
Q ss_pred ccCCCeEEEEEEEeCC----eeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceec
Q psy2166 132 YDRDQGIYTCRAWNLA----GETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTS 207 (805)
Q Consensus 132 ~~~D~G~Y~C~a~n~~----g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 207 (805)
+.+|+|.|.|.+.+.. +.......|.|.... ..+|.+..
T Consensus 87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~-------------------------------------~~~P~i~~ 129 (253)
T 3liz_H 87 KSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAK-------------------------------------TTPPSVYP 129 (253)
T ss_dssp CGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSC-------------------------------------CBCCEEEE
T ss_pred ChhhCEEEEEEEecCCcceeeEECCCEEEEEeccC-------------------------------------CCCCeEEE
Confidence 9999999999998752 222333566664211 13355443
Q ss_pred ccccccccCCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCCCcEEEEEEc---CeEEEEEcCCCCcccEEEEEEEEcC
Q psy2166 208 EFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRIRTVHAF---GMVVLEILGTKIEDTGVYTCRATNK 283 (805)
Q Consensus 208 ~~~~~~~v~~g~~~~l~C~~~~~~~p~~-~i~W~k~g~~l~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~n~ 283 (805)
..... .+.+|+.++|.|.+.. ..|.+ .+.|+++|..+...........+ ..+.|.|.....+| |.|+|.|.|.
T Consensus 130 ~~~~~-~~~~g~~v~L~C~~~g-~~P~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~ 206 (253)
T 3liz_H 130 LAPGS-AAQTNSMVTLGCLVKG-YFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHP 206 (253)
T ss_dssp ECC-------CCEEEEEEEEEE-EBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEG
T ss_pred ecCCc-ccCCCCcEEEEEEEee-EeCCCeEEEEEeCCeecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEEC
Confidence 22222 3567999999999853 25655 99999998743211000000000 12579999999999 9999999999
Q ss_pred CeeEEEEEEEEE
Q psy2166 284 WGQAEISVNLEC 295 (805)
Q Consensus 284 ~g~~~~~~~l~v 295 (805)
.+.......+.+
T Consensus 207 ~~~~~~~~~~~~ 218 (253)
T 3liz_H 207 ASSTKVDKKIVP 218 (253)
T ss_dssp GGTEEEEEECCC
T ss_pred CCCcceEEEecC
Confidence 887776666654
|
| >3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=148.61 Aligned_cols=173 Identities=16% Similarity=0.217 Sum_probs=113.5
Q ss_pred ccCCCeEEEEEEEeecCCCC----cEEEEEEC--CEEcc----------------CCCceEEEEe--CcEEEEEEcccCc
Q psy2166 316 LKDGDSAHFECTLTPVNDPE----LKVEWFHN--GKPIF----------------HKNRVKMVSD--FGFVVMDIAYVQS 371 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~----~~v~W~~~--g~~l~----------------~~~~~~~~~~--~~~~~l~i~~v~~ 371 (805)
+.+|++++|.|.+. +.+. +.+.|+|+ +..+. ...++.+..+ .+...|.|.+++.
T Consensus 12 v~~G~~v~L~C~~~--~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 89 (228)
T 3bae_H 12 LKPSQTLSLTCSFS--GFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSVDT 89 (228)
T ss_dssp ECTTCCEEEEEEEE--SSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSCCG
T ss_pred ecCCCeEEEEEEEe--CcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCCCc
Confidence 88999999999997 6654 78999984 22210 1246666553 2457899999999
Q ss_pred CCceEEEEEEEeCce------e--eE-EEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeee
Q psy2166 372 HDSGEYVCRAWNKYG------E--DF-TRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQ 442 (805)
Q Consensus 372 ~d~G~Y~C~a~n~~g------~--~~-~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (805)
+|+|.|.|.+.|..| . .. ..+.|.|...
T Consensus 90 ~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~------------------------------------------- 126 (228)
T 3bae_H 90 ADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSA------------------------------------------- 126 (228)
T ss_dssp GGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSC-------------------------------------------
T ss_pred ccCEEEEEEEecCCCccccccceeeeCCcEEEEecCC-------------------------------------------
Confidence 999999999998754 1 11 2255555311
Q ss_pred ecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEee
Q psy2166 443 ISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTP 522 (805)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~ 522 (805)
...+|.+....+... +.+|+.++|.|.+.+
T Consensus 127 -------------------------------------------------~~~~P~i~~~~~~~~-~~~g~~~~l~C~~~g 156 (228)
T 3bae_H 127 -------------------------------------------------KTTAPSVYPLAPVCG-DTTGSSVTLGCLVKG 156 (228)
T ss_dssp -------------------------------------------------CCBCCEEEEECC------CCSEEEEEEEEEE
T ss_pred -------------------------------------------------CCCCCEEEEeccccc-ccCCCCEEEEEEEcc
Confidence 123465554433333 678999999999995
Q ss_pred CCCCCc-EEEEEECCEEccCCCceEEEeeC---CEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEE
Q psy2166 523 VTDPDL-VVEWFYNGKKLPHGHRYRTFHDF---GIVILDILYCYEENSGVYECRATNKYGSDVTKAS 585 (805)
Q Consensus 523 ~g~p~~-~v~W~~~g~~l~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 585 (805)
..|.+ .|+|+++|..+.......+...+ ..+.|.|..+..+| |.|+|.|.|..|.......
T Consensus 157 -~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~ 221 (228)
T 3bae_H 157 -YFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKK 221 (228)
T ss_dssp -EBSSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred -EeCCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEE
Confidence 24666 99999998764211111111111 13459999888756 9999999999887665443
|
| >1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-14 Score=135.96 Aligned_cols=157 Identities=13% Similarity=0.148 Sum_probs=111.3
Q ss_pred cccCCCceEEEEEEEeeCCCCCe--EEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCCeeEEEE
Q psy2166 213 SNLSEGEIAHFEASLIPVGDQTM--TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 290 (805)
Q Consensus 213 ~~v~~g~~~~l~C~~~~~~~p~~--~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~ 290 (805)
+.+.+|++++|.|.+ +.|.| .|.|++.+..+ .+. ....+...|.|.+++.+|+|.|.|.+.|..+.....
T Consensus 17 v~v~~G~sv~L~C~a---~~p~P~~~i~W~~~~~~l---~~~--~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~ 88 (210)
T 1gsm_A 17 VAVALGASRQLTCRL---ACADRGASVQWRGLDTSL---GAV--QSDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHT 88 (210)
T ss_dssp EEEETTCCEEEEEEE---CCSSTTCEEEEESSTTTT---CCE--EEESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred eEEeCCCCEEEEEEC---CCCCCCcceEEeeccccc---CcE--EecCCccEEEECccCcccCceEEEEEEeCCCceEEE
Confidence 358899999999987 45555 99999965443 122 223456789999999999999999999998888889
Q ss_pred EEEEEeccCCCCCCeEEecCCCcccccCCCeEEEEEEEeecCCC----CcEEEEEECCEEccCCCceE--EEE-------
Q psy2166 291 VNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDP----ELKVEWFHNGKPIFHKNRVK--MVS------- 357 (805)
Q Consensus 291 ~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p----~~~v~W~~~g~~l~~~~~~~--~~~------- 357 (805)
+.|+|+. +|........ .+.+|+.+ |.|.+.+ ..| .++|.|+||+++|....... +..
T Consensus 89 ~~ltV~~-----~P~~~~i~~~--~~~~g~~~-l~C~a~g-~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~ 159 (210)
T 1gsm_A 89 VQLLVYA-----FPNQLTVSPA--ALVPGDPE-VACTAHK-VTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQG 159 (210)
T ss_dssp EEEEEEB-----CCSEEEEESS--SBCTTCCE-EEEEEEE-EBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSS
T ss_pred EEEEEEe-----cCCCcEEccc--eEEeCCce-EEEEeCC-CCCCCCCCcEEEEEECCEEcccccccccceecccccccC
Confidence 9999984 4443332222 36778888 9999984 345 46999999999996432111 100
Q ss_pred -eCc----EEEEEEcccCcCCceEEEEEEEeCce
Q psy2166 358 -DFG----FVVMDIAYVQSHDSGEYVCRAWNKYG 386 (805)
Q Consensus 358 -~~~----~~~l~i~~v~~~d~G~Y~C~a~n~~g 386 (805)
... ..+|.+.....+|.+.|+|.|.+..-
T Consensus 160 ~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~ 193 (210)
T 1gsm_A 160 DEDVLFRVTERWRLPPLGTPVPPALYCQATMRLP 193 (210)
T ss_dssp CCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEET
T ss_pred CcceEEEEEEEEeecCCcccCCceEEEEEEeeCC
Confidence 111 12355556667777899999998763
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-15 Score=127.82 Aligned_cols=94 Identities=27% Similarity=0.486 Sum_probs=83.7
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCC-eEEEeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR-IRTVHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
.||.|...+.+. .+.+|+.+.|.|.+. |.|.|.|.|+|+|..+....+ +....+++..+|.|.++..+|+|.|+|.
T Consensus 4 ~~P~~~~~~~~~-~v~~G~~v~l~C~~~--g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (99)
T 1u2h_A 4 APPTFKVSLMDQ-SVREGQDVIMSIRVQ--GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCK 80 (99)
T ss_dssp EEEEEEECCCCE-EEETTCCEEEEEEEE--EESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEE
T ss_pred CCCEEEEcCCce-EecCCCEEEEEEEEE--EcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEE
Confidence 578898888888 999999999999998 899999999999999887654 4445566777899999999999999999
Q ss_pred EEcCCccEEEEEEEEEEE
Q psy2166 769 ATNKWGQAEISVNLECVV 786 (805)
Q Consensus 769 a~N~~G~~~~~~~l~V~~ 786 (805)
|.|..|....++.|.|..
T Consensus 81 a~N~~g~~~~~~~l~V~~ 98 (99)
T 1u2h_A 81 AVNEYGARQCEARLEVRG 98 (99)
T ss_dssp EEETTEEEEEEEEEEEEC
T ss_pred EEECCCceeEEEEEEEEC
Confidence 999999999999999863
|
| >2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C | Back alignment and structure |
|---|
Probab=99.63 E-value=6.4e-15 Score=148.05 Aligned_cols=176 Identities=19% Similarity=0.240 Sum_probs=117.6
Q ss_pred CceecccccccccCCCceEEEEEEEeeCCCC------CeEEEEEEC--CEEcc------------CCCcEEEEEEcCeEE
Q psy2166 203 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ------TMTVEFLYN--GKPIE------------ASHRIRTVHAFGMVV 262 (805)
Q Consensus 203 p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p------~~~i~W~k~--g~~l~------------~~~~~~~~~~~~~~~ 262 (805)
+.+...+... .+.+|++++|.|.+ .+.+ .+.+.|||+ |..+. ...++......+...
T Consensus 6 ~~v~q~p~~v-~v~~G~~v~L~C~~--~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~ 82 (264)
T 2gjj_A 6 IVLTQTPSSL-PVSVGEKVTMTCKS--SQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFT 82 (264)
T ss_dssp CCEEEECSEE-EEETTCCEEEEEEE--SSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEE
T ss_pred cceEecCCeE-EecCCCcEEEEeEc--CCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEE
Confidence 4455545444 47899999999998 5665 689999984 32111 134565555556789
Q ss_pred EEEcCCCCcccEEEEEEEEcCCee-EEEEEEEEEeccCC-------------CCCCeEE-ecCCCcccccCCCeEEEEEE
Q psy2166 263 LEILGTKIEDTGVYTCRATNKWGQ-AEISVNLECVDKSK-------------GQPPKFT-SHIKSLEGLKDGDSAHFECT 327 (805)
Q Consensus 263 L~i~~~~~~d~G~Y~C~~~n~~g~-~~~~~~l~v~~~~~-------------~~~p~~~-~~~~~~~~~~~g~~~~l~C~ 327 (805)
|.|.+++.+|+|.|.|.+.+..+. ....+.|.|...+. ..+|.+. ..+... .+.+|+.++|.|.
T Consensus 83 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~G~~v~L~C~ 161 (264)
T 2gjj_A 83 LTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPE-VVKTGASVKISCK 161 (264)
T ss_dssp EEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCE-EECTTCCEEEEEE
T ss_pred EEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCE-EEcCCCcEEEEEE
Confidence 999999999999999999987542 12234566654310 0012222 222223 4889999999999
Q ss_pred EeecCCC--CcEEEEEECC--EE---cc--------------CCCceEEEEe--CcEEEEEEcccCcCCceEEEEEEEeC
Q psy2166 328 LTPVNDP--ELKVEWFHNG--KP---IF--------------HKNRVKMVSD--FGFVVMDIAYVQSHDSGEYVCRAWNK 384 (805)
Q Consensus 328 ~~~~~~p--~~~v~W~~~g--~~---l~--------------~~~~~~~~~~--~~~~~l~i~~v~~~d~G~Y~C~a~n~ 384 (805)
+. +.+ .+.+.|+|+. .. +. ...++.+..+ .....|.|.++..+|+|.|.|.+.|.
T Consensus 162 ~~--~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 239 (264)
T 2gjj_A 162 AS--GYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCVRSGN 239 (264)
T ss_dssp EE--SSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred Ee--CCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEEEecC
Confidence 98 555 3799999963 21 11 0234554432 34678999999999999999999985
|
| >3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.3e-16 Score=154.04 Aligned_cols=183 Identities=14% Similarity=0.186 Sum_probs=107.0
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEecC-----C------------CCceEEE--ecCcEEEEEEcc
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPLE-----L------------GSRFKTT--ADFGFVTLDLTE 130 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i~-----~------------~~~~~~~--~~~~~~~L~I~~ 130 (805)
.+..+.+.+|++|+|.|.+. +.+.+.|.|+|. +.... . ..++... ......+|.|.+
T Consensus 8 ~p~~~~v~~G~~v~L~C~~~--~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~ 85 (259)
T 3omz_A 8 RTKSVIRQTGSSAEITCDLA--EGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMILRN 85 (259)
T ss_dssp ---CEEEETTCCEEEECCC-------CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEEESS
T ss_pred CCceeEecCCCcEEEEEEEc--cCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEEECC
Confidence 34478899999999999998 567889999992 21110 0 0122221 122345799999
Q ss_pred cccCCCeEEEEEEEeCCe---eEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceec
Q psy2166 131 VYDRDQGIYTCRAWNLAG---ETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTS 207 (805)
Q Consensus 131 ~~~~D~G~Y~C~a~n~~g---~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 207 (805)
++.+|+|.|+|.+.+..+ .......|.|.......... +. .......+|.+..
T Consensus 86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~--~~----------------------~~~~~~~~~~v~~ 141 (259)
T 3omz_A 86 LIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDA--KK----------------------DAAKKDGAQKVTQ 141 (259)
T ss_dssp CCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------------------------------CEEEC
T ss_pred CCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCcccc--cc----------------------ccccccCCeeeEE
Confidence 999999999999998765 23334567766432100000 00 0000012345555
Q ss_pred ccccccccCCCceEEEEEEEeeCCCCCeEEEEEECC--EEcc------------CCCcEEEEE--EcCeEEEEEcCCCCc
Q psy2166 208 EFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNG--KPIE------------ASHRIRTVH--AFGMVVLEILGTKIE 271 (805)
Q Consensus 208 ~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g--~~l~------------~~~~~~~~~--~~~~~~L~i~~~~~~ 271 (805)
.+... .+.+|++++|.|.+. ...+.+.+.|||.+ ..+. ...++.... ......|.|.+++.+
T Consensus 142 ~p~~~-~v~~G~~v~L~C~~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~ 219 (259)
T 3omz_A 142 AQSSV-SMPVRKAVTLNCLYE-TSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLE 219 (259)
T ss_dssp CCCCE-EEETTCCEEECCEEE-CCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGG
T ss_pred eCCEE-EEcCCCCEEEEEECC-CccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChh
Confidence 55444 478999999999873 23478899999843 1110 012333321 123467999999999
Q ss_pred ccEEEEEEEEc
Q psy2166 272 DTGVYTCRATN 282 (805)
Q Consensus 272 d~G~Y~C~~~n 282 (805)
|+|.|.|.+.+
T Consensus 220 DsG~Y~C~~~~ 230 (259)
T 3omz_A 220 DSAKYFCALGE 230 (259)
T ss_dssp GCSEEEEEEES
T ss_pred HCEEEEEEEeC
Confidence 99999999985
|
| >2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=8.6e-15 Score=148.64 Aligned_cols=182 Identities=13% Similarity=0.092 Sum_probs=119.7
Q ss_pred CeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECC--Eec-------------C----CCCceEEEec-CcEEE
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG--KPL-------------E----LGSRFKTTAD-FGFVT 125 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g--~~i-------------~----~~~~~~~~~~-~~~~~ 125 (805)
+.+... +..+.+.+|+.++|.|.+. +.+.+.|.|+|++ ... . ...|+.+..+ ++..+
T Consensus 25 ~~v~~~-p~~v~v~~G~~v~L~C~~~--~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~s 101 (279)
T 2wbj_D 25 AVVSQH-PSWVISKSGTSVKIECRSL--DFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLST 101 (279)
T ss_dssp CCEEEE-CSEEEEETTSCEEEEEEES--SSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEE
T ss_pred ceEEeC-CCeEEecCCCeEEEEEEeC--CCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEE
Confidence 444433 4468899999999999997 5778899999963 111 0 1357777653 46779
Q ss_pred EEEcccccCCCeEEEEEEEeCCe------eEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCC
Q psy2166 126 LDLTEVYDRDQGIYTCRAWNLAG------ETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSED 199 (805)
Q Consensus 126 L~I~~~~~~D~G~Y~C~a~n~~g------~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (805)
|.|.+++.+|+|.|+|.+.+..+ .......|.|..... .
T Consensus 102 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~-----------------------------------~ 146 (279)
T 2wbj_D 102 LTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLK-----------------------------------N 146 (279)
T ss_dssp EEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGG-----------------------------------G
T ss_pred EEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCC-----------------------------------C
Confidence 99999999999999999998421 112234566654210 0
Q ss_pred CCCCceecccccccccCCCceEEEEEEEeeCCCCC-eEEEEEECCEEccCCCcEE---EE----EEcC----eEEEEEcC
Q psy2166 200 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQT-MTVEFLYNGKPIEASHRIR---TV----HAFG----MVVLEILG 267 (805)
Q Consensus 200 ~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~-~~i~W~k~g~~l~~~~~~~---~~----~~~~----~~~L~i~~ 267 (805)
..+|.+....+....+.+|+.++|.|.+.. ..|. +.|.|+|+|+.+....... .. ..++ .+.|.|..
T Consensus 147 ~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g-~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~ 225 (279)
T 2wbj_D 147 VFPPEVAVFEPSEAEISHTQKATLVCLATG-FYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSA 225 (279)
T ss_dssp CBCCEEEEEECCHHHHHHHSCCEEEEEEEE-EBSSCEEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCS
T ss_pred CCCCEEEEECCCcccccCCCceEEEEEEee-EcCCCcEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEECh
Confidence 134555543322223557899999999842 2353 8999999999886542211 00 0122 24588888
Q ss_pred CCCc-ccEEEEEEEEcCCee
Q psy2166 268 TKIE-DTGVYTCRATNKWGQ 286 (805)
Q Consensus 268 ~~~~-d~G~Y~C~~~n~~g~ 286 (805)
...+ |.|.|+|.|.|....
T Consensus 226 ~~~~d~~~~YtC~v~n~~~~ 245 (279)
T 2wbj_D 226 TFWQNPRNHFRCQVQFYGLS 245 (279)
T ss_dssp TTTTCTTCEEEEEEEECCBC
T ss_pred HHhccCCCEEEEEEEeCCCC
Confidence 7775 477999999997543
|
| >1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-14 Score=145.82 Aligned_cols=177 Identities=16% Similarity=0.199 Sum_probs=115.6
Q ss_pred CCceecccccccccCCCceEEEEEEEeeCCCC-----CeEEEEEECC--EE---cc---------CCCcEEEEEEcCeEE
Q psy2166 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ-----TMTVEFLYNG--KP---IE---------ASHRIRTVHAFGMVV 262 (805)
Q Consensus 202 ~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p-----~~~i~W~k~g--~~---l~---------~~~~~~~~~~~~~~~ 262 (805)
.+.+...+... .+.+|++++|.|.+ .+.+ .+.+.|||+. .. +. ...++......+...
T Consensus 15 ~~~v~~~p~~~-~v~~G~~v~L~C~~--~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~ 91 (268)
T 1x9q_A 15 DVVMTQTPLSL-PVSLGDQASISCRS--SQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFT 91 (268)
T ss_dssp CCCEEEECSEE-CCCTTCCEEEEEEE--SSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEE
T ss_pred cceEEeeCCeE-EecCCCCEEEEeEe--cCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEE
Confidence 34555555544 48899999999998 5555 4899999852 21 11 134565555556789
Q ss_pred EEEcCCCCcccEEEEEEEEcCCee-EEEEEEEEEeccCCCC----CCe--------------EEecCCCcccccCCCeEE
Q psy2166 263 LEILGTKIEDTGVYTCRATNKWGQ-AEISVNLECVDKSKGQ----PPK--------------FTSHIKSLEGLKDGDSAH 323 (805)
Q Consensus 263 L~i~~~~~~d~G~Y~C~~~n~~g~-~~~~~~l~v~~~~~~~----~p~--------------~~~~~~~~~~~~~g~~~~ 323 (805)
|.|.+++.+|+|.|.|.+.|..+. ......|.|...+... +|. ....+... .+.+|+.++
T Consensus 92 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~-~v~~G~~v~ 170 (268)
T 1x9q_A 92 LKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGG-LVQPGGAMK 170 (268)
T ss_dssp EEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCE-EECTTCCEE
T ss_pred EEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCce-EecCCCcEE
Confidence 999999999999999999987542 2223455554322101 110 11222233 488999999
Q ss_pred EEEEEeecCCC--CcEEEEEEC--CEEc-------------------cCCCceEEEEeC--cEEEEEEcccCcCCceEEE
Q psy2166 324 FECTLTPVNDP--ELKVEWFHN--GKPI-------------------FHKNRVKMVSDF--GFVVMDIAYVQSHDSGEYV 378 (805)
Q Consensus 324 l~C~~~~~~~p--~~~v~W~~~--g~~l-------------------~~~~~~~~~~~~--~~~~l~i~~v~~~d~G~Y~ 378 (805)
|.|.+. +.+ .+.+.|+|+ +..+ ....++.+..+. ....|.|.+++.+|+|.|.
T Consensus 171 L~C~~~--~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~ 248 (268)
T 1x9q_A 171 LSCVTS--GFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGIYY 248 (268)
T ss_dssp EEEEEE--SSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEE
T ss_pred EEEEec--CccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEEEE
Confidence 999997 544 378999985 2221 123466665442 3567999999999999999
Q ss_pred EEEEeC
Q psy2166 379 CRAWNK 384 (805)
Q Consensus 379 C~a~n~ 384 (805)
|.+.+.
T Consensus 249 C~a~~~ 254 (268)
T 1x9q_A 249 CTGASY 254 (268)
T ss_dssp EEEEET
T ss_pred EEEccC
Confidence 999875
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-15 Score=128.35 Aligned_cols=95 Identities=23% Similarity=0.454 Sum_probs=83.0
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEE-EeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT-VHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
.||.|...+.+. .+.+|+.+.|.|.+. |.|.|.|.|+|+|..+....+..+ ....+...|.|.+++.+|+|.|+|.
T Consensus 4 ~~P~~~~~p~~~-~~~~G~~~~l~C~~~--g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~ 80 (100)
T 2kdg_A 4 GPPRFIQVPENM-SIDEGRFCRMDFKVS--GLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACV 80 (100)
T ss_dssp EEEECCCCCCCE-EEETTCCEEEEEECE--EESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEE
T ss_pred CCCeEEeCCCCE-EecCCCEEEEEEEEE--eeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEE
Confidence 578888888888 999999999999998 899999999999999887765433 4456667899999999999999999
Q ss_pred EEcCCccEEEEEEEEEEEe
Q psy2166 769 ATNKWGQAEISVNLECVVW 787 (805)
Q Consensus 769 a~N~~G~~~~~~~l~V~~~ 787 (805)
|.|..|..+.++.|.|...
T Consensus 81 a~n~~g~~~~~~~l~V~~~ 99 (100)
T 2kdg_A 81 AKNRAGEATFTVQLDVLAK 99 (100)
T ss_dssp EEETTEEEEEEEEEEEECC
T ss_pred EEcCCCeEEEEEEEEEEec
Confidence 9999999999999999753
|
| >3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A | Back alignment and structure |
|---|
Probab=99.62 E-value=4.6e-15 Score=147.10 Aligned_cols=170 Identities=15% Similarity=0.142 Sum_probs=115.1
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEE--------------CCEEcc---CCCceEEEEe-CcEEEEEEcccCcCCceEE
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFH--------------NGKPIF---HKNRVKMVSD-FGFVVMDIAYVQSHDSGEY 377 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~--------------~g~~l~---~~~~~~~~~~-~~~~~l~i~~v~~~d~G~Y 377 (805)
+.+|+.++|.|.+. + +.+.|.|+| ++.... ...++.+..+ .....|.|.+++.+|+|.|
T Consensus 14 v~~G~~v~L~C~~~--~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y 90 (240)
T 3q5y_A 14 KEKGGRSVLTCIPI--S-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMY 90 (240)
T ss_dssp EETTCCEEEEEECC--T-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEEE
T ss_pred ecCCCcEEEEEEeC--C-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhHCEEE
Confidence 78999999999985 4 778999998 222111 1246666543 3466899999999999999
Q ss_pred EEEEEeC--c-eeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCce
Q psy2166 378 VCRAWNK--Y-GEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQS 454 (805)
Q Consensus 378 ~C~a~n~--~-g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (805)
.|.+.+. . ........|.|....
T Consensus 91 ~C~~~~~~~~~~~~~~~~~l~V~~~~------------------------------------------------------ 116 (240)
T 3q5y_A 91 FCASSLRWGDEQYFGPGTRLTVLEDL------------------------------------------------------ 116 (240)
T ss_dssp EEEEESSTTBCCEECCCEEEEEESCG------------------------------------------------------
T ss_pred EEEEccCCCcceEEcCCEEEEEeccc------------------------------------------------------
Confidence 9999832 1 122233455554210
Q ss_pred EEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCc-EEEEE
Q psy2166 455 AHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDL-VVEWF 533 (805)
Q Consensus 455 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~-~v~W~ 533 (805)
....+|.+....+....+.+|+.++|.|.+.+. .|.+ .++|+
T Consensus 117 ------------------------------------~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~-~P~~~~v~W~ 159 (240)
T 3q5y_A 117 ------------------------------------RNVTPPKVSLFEPSKAEIANKQKATLVCLARGF-FPDHVELSWW 159 (240)
T ss_dssp ------------------------------------GGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEE-BSSCEEEEEE
T ss_pred ------------------------------------cCCCCCeeEEeCCchhhcccCCceEEEEEEeeE-ECCCeEEEEE
Confidence 013556666544444446789999999999962 4544 89999
Q ss_pred ECCEEccCCCceE---EEeeCCE----EEEEEccCCCCC-CEEEEEEEEcCCcc
Q psy2166 534 YNGKKLPHGHRYR---TFHDFGI----VILDILYCYEEN-SGVYECRATNKYGS 579 (805)
Q Consensus 534 ~~g~~l~~~~~~~---~~~~~~~----~~L~i~~v~~~d-~G~Y~C~a~n~~g~ 579 (805)
|||+.+..+.+.. ....++. +.|.|.....+| .|.|+|.|.|....
T Consensus 160 ~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~ 213 (240)
T 3q5y_A 160 VNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS 213 (240)
T ss_dssp ETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred ECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence 9999997543221 1222332 249999888888 67999999987654
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=6.6e-15 Score=122.44 Aligned_cols=89 Identities=18% Similarity=0.318 Sum_probs=80.6
Q ss_pred eeecCCcccccCCCCeEEEEEEEeecCC-CCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcC
Q psy2166 694 FTSEFQHLSNLSEGEIAHFEASLIPVGD-QTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNK 772 (805)
Q Consensus 694 ~~~~~~~~~~v~~G~~~~l~C~~~~~g~-p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~ 772 (805)
+...+.+. .+.+|+.+.|.|.+. |. |.|.|.|+|++..+..+.++.+...++...|.|.++..+|+|.|+|.|.|.
T Consensus 4 v~~~~~~~-~v~~G~~v~l~C~~~--g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~ 80 (97)
T 2bk8_A 4 VSGQIMHA-VGEEGGHVKYVCKIE--NYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVND 80 (97)
T ss_dssp EECCCCCE-EECTTCCEEEEEEEE--SCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred eeccCcCE-EEcCCCcEEEEEEEe--ccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECC
Confidence 34445666 899999999999999 86 999999999999999999998877888889999999999999999999999
Q ss_pred CccEEEEEEEEEE
Q psy2166 773 WGQAEISVNLECV 785 (805)
Q Consensus 773 ~G~~~~~~~l~V~ 785 (805)
.|....++.|.|.
T Consensus 81 ~g~~~~~~~l~V~ 93 (97)
T 2bk8_A 81 YGEDSSYAELFVK 93 (97)
T ss_dssp SCEEEEEEEEEET
T ss_pred CCeEeEEEEEEEE
Confidence 9999999999885
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-15 Score=130.81 Aligned_cols=99 Identities=21% Similarity=0.330 Sum_probs=86.8
Q ss_pred CCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccC-CCCeEEEee-CcEEEEEEcCCCCCCCEEEE
Q psy2166 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEA-SHRIRTVHA-FGMVVLEILGTKIEDTGVYT 766 (805)
Q Consensus 689 ~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~-~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~ 766 (805)
..+|.|...+.+. .+.+|+.+.|.|.+. |.|.|.|.|+|+|+.+.. ..++.+..+ .+...|.|.++..+|+|.|+
T Consensus 6 ~~~P~~~~~~~~~-~v~~G~~v~l~C~~~--g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~ 82 (110)
T 2dm2_A 6 SGAPFFEMKLKHY-KIFEGMPVTFTCRVA--GNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYT 82 (110)
T ss_dssp SCCCCBSSCCCCE-EEETTCCEEEEEEBC--CSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCE
T ss_pred CCCCEEEecCcCe-EEeCCCeEEEEEEEE--ecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEE
Confidence 3689999888888 999999999999998 999999999999999886 466666554 56678999999999999999
Q ss_pred EEEEcCCccEEEEEEEEEEEeCCC
Q psy2166 767 CRATNKWGQAEISVNLECVVWSPS 790 (805)
Q Consensus 767 C~a~N~~G~~~~~~~l~V~~~~~~ 790 (805)
|.|.|.+|.....+.|.|...+..
T Consensus 83 C~a~N~~g~~~~~~~l~V~~~~~~ 106 (110)
T 2dm2_A 83 IMAANPQGRISCTGRLMVQAVNSG 106 (110)
T ss_dssp EEEECTTCCEEECCCEEEECCSCC
T ss_pred EEEEECCCeEEEEEEEEEECCCCC
Confidence 999999999999999999775544
|
| >3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-14 Score=142.52 Aligned_cols=166 Identities=15% Similarity=0.219 Sum_probs=113.4
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEECC--EE---c----------------cCCCceEEEEe--CcEEEEEEcccCcC
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFHNG--KP---I----------------FHKNRVKMVSD--FGFVVMDIAYVQSH 372 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~g--~~---l----------------~~~~~~~~~~~--~~~~~l~i~~v~~~ 372 (805)
+.+|+.++|.|.+.+...+.+.+.|+|.. .. + ....++.+..+ .....|.|.+++.+
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~ 91 (221)
T 3m8o_H 12 VQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSLKSD 91 (221)
T ss_dssp ECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSCCGG
T ss_pred EcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCCCHH
Confidence 78999999999997321336789999732 11 1 01256666654 45678999999999
Q ss_pred CceEEEEEEEeCc--eeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeec
Q psy2166 373 DSGEYVCRAWNKY--GEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLK 450 (805)
Q Consensus 373 d~G~Y~C~a~n~~--g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (805)
|+|.|.|.+.+.. ......+.|.|...
T Consensus 92 DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~--------------------------------------------------- 120 (221)
T 3m8o_H 92 DTAMYYCVIRGDVYNRQWGQGTLVTVSSA--------------------------------------------------- 120 (221)
T ss_dssp GCEEEEEEEESCTTCCCBBCCEEEEECSC---------------------------------------------------
T ss_pred HCEEEEEEEECCChhheECCCEEEEEecC---------------------------------------------------
Confidence 9999999998763 12223345555311
Q ss_pred CCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCC--c
Q psy2166 451 EGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPD--L 528 (805)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~--~ 528 (805)
...+|.+....+... .+|+.++|.|.+.+ ..|. +
T Consensus 121 -----------------------------------------~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~-~~P~~~~ 156 (221)
T 3m8o_H 121 -----------------------------------------SPTSPKVFPLSLCST--QPDGNVVIACLVQG-FFPQEPL 156 (221)
T ss_dssp -----------------------------------------CCBCCEEEEEECCSC--CCTTEEEEEEEEEE-EBSSCSE
T ss_pred -----------------------------------------CCCCCeEEEecCccc--ccCCCEEEEEEEEe-eECCCCE
Confidence 124555553222222 68999999999996 2554 6
Q ss_pred EEEEEECCEEcc----------CCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceE
Q psy2166 529 VVEWFYNGKKLP----------HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDV 581 (805)
Q Consensus 529 ~v~W~~~g~~l~----------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 581 (805)
.++|+++|+.+. .+.++.+ .+.|.|.....+|+|.|+|.|.|..+...
T Consensus 157 ~v~W~~~g~~~~~~~~~~~~~~~~~~~~~-----~s~L~i~~~~~~d~g~ytC~v~~~~~~~~ 214 (221)
T 3m8o_H 157 SVTWSESGQGVTARNFPPSQDASGDLYTT-----SSQLTLPATQCLAGKSVTCHVKHYTNPSQ 214 (221)
T ss_dssp EEEESCCSTTCEEEECCCEECSSSSCEEE-----EEEEEEEGGGSCTTCEEEEEEEETTSCCE
T ss_pred EEEEEECCEECceEEcCceeeCCCCcEEE-----EEEEEECHHHcCCCCeEEEEEEECCCCce
Confidence 999999998762 2222222 23599999999999999999999876643
|
| >1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-15 Score=147.27 Aligned_cols=177 Identities=15% Similarity=0.102 Sum_probs=112.2
Q ss_pred CCceecCCCcEEEEEEEecCCCCCceEEEEECC--Eec----------------CCCCceEEEec--CcEEEEEEccccc
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG--KPL----------------ELGSRFKTTAD--FGFVTLDLTEVYD 133 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g--~~i----------------~~~~~~~~~~~--~~~~~L~I~~~~~ 133 (805)
..+.+.+|+.++|.|.+.+...+.+.|.|+|+. ..+ ...+|+.+..+ ++.++|.|.+++.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~ 87 (215)
T 1c5d_H 8 GPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQT 87 (215)
T ss_dssp CCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCG
T ss_pred CCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCc
Confidence 367899999999999998422235789999852 211 01347777653 3567999999999
Q ss_pred CCCeEEEEEEEeCCee---EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccc
Q psy2166 134 RDQGIYTCRAWNLAGE---TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQ 210 (805)
Q Consensus 134 ~D~G~Y~C~a~n~~g~---~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 210 (805)
+|+|.|.|.+.+..+. ....+.|.|.... ..+|.+....+
T Consensus 88 ~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~-------------------------------------~~~P~i~~~~~ 130 (215)
T 1c5d_H 88 EDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQ-------------------------------------TTAPSVYPLAP 130 (215)
T ss_dssp GGCEEEEEEECCSSSCSCCBCCCEEEEECSSC-------------------------------------CBCCCEEEECC
T ss_pred ccCEEEEEEEecCCcccceEcCCEEEEecCCC-------------------------------------CCCCeEEeccC
Confidence 9999999999886421 1223567765311 12344443322
Q ss_pred cccccCCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCCCcEEEEEEcCeEEE--EEcCCCCcccEEEEEEEEcCCeeE
Q psy2166 211 HLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRIRTVHAFGMVVL--EILGTKIEDTGVYTCRATNKWGQA 287 (805)
Q Consensus 211 ~~~~v~~g~~~~l~C~~~~~~~p~~-~i~W~k~g~~l~~~~~~~~~~~~~~~~L--~i~~~~~~d~G~Y~C~~~n~~g~~ 287 (805)
.. .+.+|+.++|.|.+. ...|.+ .+.|+++|..+....... ....+...+ .+.....+| |.|+|.|.|..+..
T Consensus 131 ~~-~~~~g~~v~L~C~~~-g~~P~p~~v~W~~~g~~~~~~~~~~-~~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~ 206 (215)
T 1c5d_H 131 GC-GDTTSSTVTLGCLVK-GYFPEPVTVTWNSGALSSDVHTFPA-VLQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASST 206 (215)
T ss_dssp CS-SCCCCSSEEEEEEEE-EEBSSCCEEEEGGGTTCCSCCBCCC-EEETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTE
T ss_pred Ch-hhccCCcEEEEEEEe-eeEcCCcEEEEccCCccCceEecCc-ccCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCc
Confidence 22 257899999999984 233766 999999987643211111 111232222 122444456 99999999988766
Q ss_pred EEEE
Q psy2166 288 EISV 291 (805)
Q Consensus 288 ~~~~ 291 (805)
....
T Consensus 207 ~~~~ 210 (215)
T 1c5d_H 207 KVDK 210 (215)
T ss_dssp EEEE
T ss_pred cEEE
Confidence 5433
|
| >1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ... | Back alignment and structure |
|---|
Probab=99.62 E-value=7.9e-15 Score=145.02 Aligned_cols=174 Identities=11% Similarity=0.089 Sum_probs=112.9
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEECC--Ee---c------------CCCCceEEEec-CcEEEEEEccccc
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG--KP---L------------ELGSRFKTTAD-FGFVTLDLTEVYD 133 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g--~~---i------------~~~~~~~~~~~-~~~~~L~I~~~~~ 133 (805)
.+..+.+.+|+.++|.|.+. .+.+.|.|+|++ .. + ....|+.+..+ ++..+|.|.+++.
T Consensus 5 ~p~~v~v~~G~~v~L~C~~~---~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~ 81 (238)
T 1bec_A 5 SPRNKVAVTGGKVTLSCQQT---NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATP 81 (238)
T ss_dssp ECSEEEEETTCCEEEEEEES---SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCG
T ss_pred CCCeeEEeCCCcEEEEEEeC---CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCc
Confidence 34467899999999999986 357899999953 11 1 12457776643 4567999999999
Q ss_pred CCCeEEEEEEEeCCe---e--EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecc
Q psy2166 134 RDQGIYTCRAWNLAG---E--TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSE 208 (805)
Q Consensus 134 ~D~G~Y~C~a~n~~g---~--~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 208 (805)
+|+|.|+|.+.+..+ . ......|.|..... ...+|.+...
T Consensus 82 ~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~-----------------------------------~~~~P~v~~~ 126 (238)
T 1bec_A 82 SQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLR-----------------------------------QVTPPKVSLF 126 (238)
T ss_dssp GGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGG-----------------------------------GCBCCEEEEE
T ss_pred ccCEEEEEEEecCCCCccccccCCCEEEEEeccCC-----------------------------------CCCCCceEEE
Confidence 999999999998631 1 11234566654210 0134555443
Q ss_pred cccccccCCCceEEEEEEEeeCCCCC-eEEEEEECCEEccCCCcEE---EEEEcCe----EEEEEcCCCCcc-cEEEEEE
Q psy2166 209 FQHLSNLSEGEIAHFEASLIPVGDQT-MTVEFLYNGKPIEASHRIR---TVHAFGM----VVLEILGTKIED-TGVYTCR 279 (805)
Q Consensus 209 ~~~~~~v~~g~~~~l~C~~~~~~~p~-~~i~W~k~g~~l~~~~~~~---~~~~~~~----~~L~i~~~~~~d-~G~Y~C~ 279 (805)
.+....+.+|+.++|.|.+.. ..|. +.+.|+|+|..+....... ....++. +.|.|.....+| .|.|+|.
T Consensus 127 ~~~~~~~~~g~~~~L~C~~~g-~~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~ 205 (238)
T 1bec_A 127 EPSKAEIANKQKATLVCLARG-FFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQ 205 (238)
T ss_dssp CCCSTTCSSSCSCSEEEEEEE-EBSCCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEE
T ss_pred CCChHHcccCCceEEEEEEee-EeCCCcEEEEEECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEE
Confidence 333234668999999999842 2354 5999999999886543211 1223332 234444333333 6799999
Q ss_pred EEcCC
Q psy2166 280 ATNKW 284 (805)
Q Consensus 280 ~~n~~ 284 (805)
|.|..
T Consensus 206 v~~~~ 210 (238)
T 1bec_A 206 VQFHG 210 (238)
T ss_dssp EEECC
T ss_pred EEcCC
Confidence 99864
|
| >2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.1e-15 Score=149.62 Aligned_cols=175 Identities=10% Similarity=0.088 Sum_probs=114.6
Q ss_pred CCCceecCCCcEEEEEEEecCCCC--CceEEEEECC--Eec------C-----------CCCceEEEec--CcEEEEEEc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDP--NLKIEWIFNG--KPL------E-----------LGSRFKTTAD--FGFVTLDLT 129 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p--~~~v~W~k~g--~~i------~-----------~~~~~~~~~~--~~~~~L~I~ 129 (805)
+..+.+.+|++|+|.|.+. +.+ .+.|.|+|+. ..+ . ...|+.+..+ .+..+|.|.
T Consensus 13 p~~~~v~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 90 (261)
T 2xqy_G 13 PGAELVKPGASVKMSCKAS--GYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLS 90 (261)
T ss_dssp CSEEEECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred CCCEEEcCCCCEEEEEEeC--CcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEc
Confidence 3467899999999999998 344 6789999863 211 0 1357777654 356789999
Q ss_pred ccccCCCeEEEEEEEeCCe-e--EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCcee
Q psy2166 130 EVYDRDQGIYTCRAWNLAG-E--TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFT 206 (805)
Q Consensus 130 ~~~~~D~G~Y~C~a~n~~g-~--~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 206 (805)
+++.+|+|.|.|.+.+..+ . ....+.|.|.... ..+|.+.
T Consensus 91 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~-------------------------------------~~~P~v~ 133 (261)
T 2xqy_G 91 SLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAK-------------------------------------TTAPSVY 133 (261)
T ss_dssp SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSC-------------------------------------CBCCEEE
T ss_pred CCCcccCeEEEEEEecCCCcceEECCCEEEEEccCC-------------------------------------CCCCeEE
Confidence 9999999999999998642 1 1123466665311 1234443
Q ss_pred cccccccccCCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCCCcEEEEEEc---CeEEEEEcCCCCcccEEEEEEEEc
Q psy2166 207 SEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRIRTVHAF---GMVVLEILGTKIEDTGVYTCRATN 282 (805)
Q Consensus 207 ~~~~~~~~v~~g~~~~l~C~~~~~~~p~~-~i~W~k~g~~l~~~~~~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~n 282 (805)
...+.. .+.+|+.++|.|.+.. ..|.+ .|.|++++..+...........+ ..+.|.|.....+| |.|+|.|.|
T Consensus 134 ~~~p~~-~v~~g~~v~L~C~~~g-~~P~~i~v~W~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n 210 (261)
T 2xqy_G 134 PLAPVC-GDTTGSSVTLGCLVKG-YFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAH 210 (261)
T ss_dssp EECCCC-C--CCSEEEEEEEEEE-EBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEE
T ss_pred EeCCCc-cccCCCcEEEEEEEEe-EeCCCCEEEEecCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEE
Confidence 322222 2568999999999852 24655 99999998765321000001111 13579999888888 999999999
Q ss_pred CCeeEEE
Q psy2166 283 KWGQAEI 289 (805)
Q Consensus 283 ~~g~~~~ 289 (805)
.......
T Consensus 211 ~~~~~~~ 217 (261)
T 2xqy_G 211 PASSTKV 217 (261)
T ss_dssp GGGTEEE
T ss_pred CCCCccE
Confidence 7655443
|
| >2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-15 Score=149.15 Aligned_cols=174 Identities=13% Similarity=0.132 Sum_probs=107.5
Q ss_pred cccCCCeEEEEEEEeeCCCC--CcEEEEEECC--EEc------c-----------CCCceEEEee--CCEEEEEEccCCC
Q psy2166 507 QLKEGQSAHFEARLTPVTDP--DLVVEWFYNG--KKL------P-----------HGHRYRTFHD--FGIVILDILYCYE 563 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~p--~~~v~W~~~g--~~l------~-----------~~~~~~~~~~--~~~~~L~i~~v~~ 563 (805)
.+.+|++++|.|.+. +.+ .+.+.|+|+. ..+ . ...|+.+..+ .+...|.|.+++.
T Consensus 17 ~v~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 94 (261)
T 2xqy_G 17 LVKPGASVKMSCKAS--GYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLTS 94 (261)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred EEcCCCCEEEEEEeC--CcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCCc
Confidence 489999999999998 544 6789999862 211 0 1246655443 3456788988888
Q ss_pred CCCEEEEEEEEcCCcceEEEEEEEEeeeeeeeecCCCCeEEEEECCEEccCCCceEEEeeCCEEEEEeccCCCCCcEEEE
Q psy2166 564 ENSGVYECRATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYE 643 (805)
Q Consensus 564 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 643 (805)
+|+|.|.|.+.|..+.... |
T Consensus 95 ~DsG~Y~C~~~~~~~~~~~----------------------~-------------------------------------- 114 (261)
T 2xqy_G 95 EDSAVYYCGRLGYVYGFDY----------------------W-------------------------------------- 114 (261)
T ss_dssp GGCEEEEEEEECTTSSEEE----------------------E--------------------------------------
T ss_pred ccCeEEEEEEecCCCcceE----------------------E--------------------------------------
Confidence 8999999988775321000 0
Q ss_pred EEEEeCCcceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCeEEEEEEEeecC-CC
Q psy2166 644 CRATNKYGSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVG-DQ 722 (805)
Q Consensus 644 C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g-~p 722 (805)
+ ..+.|.|...+ ..+|.+....... .+.+|+.++|.|.+. | .|
T Consensus 115 -------~---~~~~L~V~~~~-----------------------~~~P~v~~~~p~~-~v~~g~~v~L~C~~~--g~~P 158 (261)
T 2xqy_G 115 -------G---QGTTLTVSSAK-----------------------TTAPSVYPLAPVC-GDTTGSSVTLGCLVK--GYFP 158 (261)
T ss_dssp -------C---CCEEEEECSSC-----------------------CBCCEEEEECCCC-C--CCSEEEEEEEEE--EEBS
T ss_pred -------C---CCEEEEEccCC-----------------------CCCCeEEEeCCCc-cccCCCcEEEEEEEE--eEeC
Confidence 0 00112222100 0234444322223 467899999999998 5 47
Q ss_pred Ce-EEEEEECCEEccCCCCeEEEeeCc---EEEEEEcCCCCCCCEEEEEEEEcCCccEEEE
Q psy2166 723 TM-TVEFLYNGKPIEASHRIRTVHAFG---MVVLEILGTKIEDTGVYTCRATNKWGQAEIS 779 (805)
Q Consensus 723 ~~-~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~ 779 (805)
.+ .|.|+++|..+.......+...+. ...|.|..+..+| |.|+|.|.|........
T Consensus 159 ~~i~v~W~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~~~ 218 (261)
T 2xqy_G 159 EPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVD 218 (261)
T ss_dssp SCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEE
T ss_pred CCCEEEEecCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCccEE
Confidence 66 999999997653211101111111 2469999999888 99999999987765443
|
| >4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D | Back alignment and structure |
|---|
Probab=99.62 E-value=6.4e-15 Score=146.61 Aligned_cols=170 Identities=16% Similarity=0.201 Sum_probs=114.6
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEE--------------CCEEccCC----CceEEEEe-CcEEEEEEcccCcCCceE
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFH--------------NGKPIFHK----NRVKMVSD-FGFVVMDIAYVQSHDSGE 376 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~--------------~g~~l~~~----~~~~~~~~-~~~~~l~i~~v~~~d~G~ 376 (805)
+.+|+.++|.| .. +.+.+.+.|+| ++..+... .++.+..+ .+...|.|.+++.+|+|.
T Consensus 14 v~~G~~v~L~C-~~--~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~ 90 (245)
T 4ei6_B 14 IDMGQMVTLNC-DP--VSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALEDSAV 90 (245)
T ss_dssp EETTCCEEEEE-EC--CTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGGGCEE
T ss_pred ecCCCCEEEEE-Ec--CCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHhHCEE
Confidence 78999999999 43 77888999998 33222211 56666543 345689999999999999
Q ss_pred EEEEEEeCc----eeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCC
Q psy2166 377 YVCRAWNKY----GEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEG 452 (805)
Q Consensus 377 Y~C~a~n~~----g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (805)
|.|.+.+.. +.......|.|....
T Consensus 91 Y~C~~~~~~~~~~~~~~~~~~l~V~~~~---------------------------------------------------- 118 (245)
T 4ei6_B 91 YFCASSFWGAYAEQFFGPGTRLTVLEDL---------------------------------------------------- 118 (245)
T ss_dssp EEEEEECSSTTCCCEECCCEEEEEESCG----------------------------------------------------
T ss_pred EEEEEccCCCcceEEEcCCcEEEEeccc----------------------------------------------------
Confidence 999998532 222233455554210
Q ss_pred ceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCC-cEEE
Q psy2166 453 QSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPD-LVVE 531 (805)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~-~~v~ 531 (805)
....+|.+....+....+.+|+.++|.|.+.+. .|. +.++
T Consensus 119 --------------------------------------~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~-~p~~~~v~ 159 (245)
T 4ei6_B 119 --------------------------------------KNVFPPEVAVFEPSEAEISHTQKATLVCLATGF-YPDHVELS 159 (245)
T ss_dssp --------------------------------------GGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEE-BSSCEEEE
T ss_pred --------------------------------------CCCCCceEEEeCCCcccccCCCceEEEEEEeeE-eCCCeEEE
Confidence 012456665554444446789999999999963 444 4999
Q ss_pred EEECCEEccCCCceEEE--------eeCC---EEEEEEccCCCCC-CEEEEEEEEcCCcc
Q psy2166 532 WFYNGKKLPHGHRYRTF--------HDFG---IVILDILYCYEEN-SGVYECRATNKYGS 579 (805)
Q Consensus 532 W~~~g~~l~~~~~~~~~--------~~~~---~~~L~i~~v~~~d-~G~Y~C~a~n~~g~ 579 (805)
|++||+.+..+.+.... .++. .+.|.|.....+| .|.|+|.|.|....
T Consensus 160 W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~ 219 (245)
T 4ei6_B 160 WWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 219 (245)
T ss_dssp EEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred EEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence 99999998754221110 0111 2348888887788 99999999987544
|
| >1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ... | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-15 Score=146.56 Aligned_cols=181 Identities=15% Similarity=0.149 Sum_probs=106.2
Q ss_pred CeEEecCCCCce-ecCCCcEEEEEEEecCCC--CCceEEEEECCEecCCCC--ceEEEecCc---EEEEEEcccccCCCe
Q psy2166 66 PVFIVPLKPEFK-LGEAQPLHLEAQVEPKND--PNLKIEWIFNGKPLELGS--RFKTTADFG---FVTLDLTEVYDRDQG 137 (805)
Q Consensus 66 p~~~~~~~~~~~-v~~G~~v~L~C~~~~~~~--p~~~v~W~k~g~~i~~~~--~~~~~~~~~---~~~L~I~~~~~~D~G 137 (805)
|.+.+.++.... +.+|+.++|.|.+.+... |.+.|.|+|+|..+.... ......++. ...|.|.....+|+|
T Consensus 2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g 81 (207)
T 1l6x_A 2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGK 81 (207)
T ss_dssp CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTC
T ss_pred CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCc
Confidence 444444443333 379999999999984311 246999999998876432 111111221 123455555566699
Q ss_pred EEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCC
Q psy2166 138 IYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 217 (805)
Q Consensus 138 ~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~ 217 (805)
.|+|.|.|..+.......+.+. . ....+|.+.........+ +
T Consensus 82 ~Y~C~a~n~~~~~~~~~~v~~~--~-----------------------------------~~~~~P~v~~~~~~~~~~-~ 123 (207)
T 1l6x_A 82 EYKCKVSNKALPAPIEKTISKA--K-----------------------------------GQPREPQVYTLPPSRDEL-T 123 (207)
T ss_dssp CEEEEEECTTSSSCEEEEECCC--C-----------------------------------SCCBCCEEEEECCCGGGG-G
T ss_pred eEEEEEEcCcCCcceEEEeccC--C-----------------------------------CCCcCCEEEEECCChHHh-c
Confidence 9999999987654222222110 0 001345554433332223 4
Q ss_pred CceEEEEEEEeeCCCCC-eEEEEEECCEEccCCCcEEE-EEEcCe----EEEEEcCCCCcccEEEEEEEEcCCe
Q psy2166 218 GEIAHFEASLIPVGDQT-MTVEFLYNGKPIEASHRIRT-VHAFGM----VVLEILGTKIEDTGVYTCRATNKWG 285 (805)
Q Consensus 218 g~~~~l~C~~~~~~~p~-~~i~W~k~g~~l~~~~~~~~-~~~~~~----~~L~i~~~~~~d~G~Y~C~~~n~~g 285 (805)
|..++|.|.+.. .+|. +.|.|+|+|..+........ ...++. ..|.|.....+|.|.|+|.|.|...
T Consensus 124 ~~~~~L~C~~~g-~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l 196 (207)
T 1l6x_A 124 KNQVSLTCLVKG-FYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL 196 (207)
T ss_dssp SSEEEEEEEEEE-EBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred CCcEEEEEEEeC-eECCCeEEEEEECCeeccCccccCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCc
Confidence 556999999852 2443 59999999998863211111 122232 3455665556789999999999754
|
| >3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H | Back alignment and structure |
|---|
Probab=99.62 E-value=6.4e-15 Score=147.12 Aligned_cols=134 Identities=8% Similarity=0.041 Sum_probs=91.9
Q ss_pred CEEEEEeccCCCCCcEEEEEEEEeCC----cceEEEEEEEEeeccccccccccccccCCCCCCCCCCCCCCCeeeecCCc
Q psy2166 625 GIVILDILYCYEENSGVYECRATNKY----GSDVTKASLKCVSKTNLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQH 700 (805)
Q Consensus 625 ~~~~L~i~~~~~~d~G~Y~C~a~n~~----g~~~~~~~l~V~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~ 700 (805)
+...|.|.+++.+|+|.|.|.+.|.. +.......|.|...+ ..+|.+......
T Consensus 77 ~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~-----------------------~~~P~i~~~~~~ 133 (253)
T 3liz_H 77 NTLFLQMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAK-----------------------TTPPSVYPLAPG 133 (253)
T ss_dssp TEEEEEECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSC-----------------------CBCCEEEEECC-
T ss_pred CEEEEEECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccC-----------------------CCCCeEEEecCC
Confidence 56679999999999999999998863 222334567775211 146777755554
Q ss_pred ccccCCCCeEEEEEEEeecC-CCCe-EEEEEECCEEccCCCCeEEEeeCc---EEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 701 LSNLSEGEIAHFEASLIPVG-DQTM-TVEFLYNGKPIEASHRIRTVHAFG---MVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 701 ~~~v~~G~~~~l~C~~~~~g-~p~~-~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
. .+..|+.++|.|.+. | .|.+ .|.|+++|..+...........+. ...|.|..+..+| |.|+|.|.|..+.
T Consensus 134 ~-~~~~g~~v~L~C~~~--g~~P~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~ 209 (253)
T 3liz_H 134 S-AAQTNSMVTLGCLVK--GYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASS 209 (253)
T ss_dssp ------CCEEEEEEEEE--EEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGT
T ss_pred c-ccCCCCcEEEEEEEe--eEeCCCeEEEEEeCCeecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCC
Confidence 4 577899999999998 5 6766 899999997432110000111111 1469999999999 9999999999998
Q ss_pred EEEEEEEEEE
Q psy2166 776 AEISVNLECV 785 (805)
Q Consensus 776 ~~~~~~l~V~ 785 (805)
......|.+.
T Consensus 210 ~~~~~~~~~~ 219 (253)
T 3liz_H 210 TKVDKKIVPR 219 (253)
T ss_dssp EEEEEECCCC
T ss_pred cceEEEecCc
Confidence 8888877765
|
| >2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=7.6e-16 Score=125.16 Aligned_cols=88 Identities=15% Similarity=0.180 Sum_probs=75.3
Q ss_pred CCCeeeecCCcc-cccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 690 RPPQFTSEFQHL-SNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 690 ~~P~~~~~~~~~-~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
.||.|..++.+. +.+.+|+.+.|.|.+. + |.|.|+|+|||++|..+.++.+..+++...|.|.++..+|+|.|+|.
T Consensus 3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~--~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~ 79 (91)
T 2lvc_A 3 MPVHIVDPREHVFVHAITSECVMLACEVD--R-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCV 79 (91)
T ss_dssp CCCCCCBCCSCEEEECCTTCCEEEEEECS--C-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred CCcEEeccCCCeEEEEECCCcEEEEEEEC--C-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEE
Confidence 467777766654 2567999999999985 5 88899999999999999999999999999999999999999999999
Q ss_pred EEcCCccEEEEEEEEE
Q psy2166 769 ATNKWGQAEISVNLEC 784 (805)
Q Consensus 769 a~N~~G~~~~~~~l~V 784 (805)
|.| .+.++.|+|
T Consensus 80 a~n----~~~~~~ltV 91 (91)
T 2lvc_A 80 AGD----ECAYFTVTI 91 (91)
T ss_dssp CSS----CEEEEEEEC
T ss_pred Ecc----eEEEEEEEC
Confidence 966 567777765
|
| >1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-15 Score=150.42 Aligned_cols=183 Identities=12% Similarity=0.093 Sum_probs=111.7
Q ss_pred CCeEEecCCCCce-ecCCCcEEEEEEEecCC-CCCc-eEEEEECCEecCCCCce-EEEecC----cEEEEEEcccccCCC
Q psy2166 65 KPVFIVPLKPEFK-LGEAQPLHLEAQVEPKN-DPNL-KIEWIFNGKPLELGSRF-KTTADF----GFVTLDLTEVYDRDQ 136 (805)
Q Consensus 65 ~p~~~~~~~~~~~-v~~G~~v~L~C~~~~~~-~p~~-~v~W~k~g~~i~~~~~~-~~~~~~----~~~~L~I~~~~~~D~ 136 (805)
+|.+...++.... +.+|+.++|.|.+.+.. .|.+ .|.|+|++..+...... .....+ ...+|.|.+++.+|+
T Consensus 15 ~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~ 94 (239)
T 1i1c_A 15 VSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNG 94 (239)
T ss_dssp --CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTT
T ss_pred CCEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCC
Confidence 3444444443334 78999999999998431 1655 89999998766532110 001111 234799999999999
Q ss_pred eEEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccC
Q psy2166 137 GIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLS 216 (805)
Q Consensus 137 G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~ 216 (805)
|.|+|.+.|..+.......+.. .. ....+|.+...+.... ..
T Consensus 95 g~Y~C~~~~~~~~~~~~~~v~~--~~-----------------------------------~~~~~P~v~v~~~~~~-~~ 136 (239)
T 1i1c_A 95 KTFKCKVNSGAFPAPIEKSISK--PE-----------------------------------GTPRGPQVYTMAPPKE-EM 136 (239)
T ss_dssp CCEEEEEECSSSSSCEEEEECC--CS-----------------------------------SCCBCCEEEEECCCGG-GG
T ss_pred CeEEEEEecccCCCCcEEEEec--CC-----------------------------------CCCcCCEEEEECCChH-Hh
Confidence 9999999998765322222211 00 0114566555444332 23
Q ss_pred CCceEEEEEEEeeCCCCC-eEEEEEECCEEccCCCcEEE-EEEcCe----EEEEEcCCCCcccEEEEEEEEcCCee
Q psy2166 217 EGEIAHFEASLIPVGDQT-MTVEFLYNGKPIEASHRIRT-VHAFGM----VVLEILGTKIEDTGVYTCRATNKWGQ 286 (805)
Q Consensus 217 ~g~~~~l~C~~~~~~~p~-~~i~W~k~g~~l~~~~~~~~-~~~~~~----~~L~i~~~~~~d~G~Y~C~~~n~~g~ 286 (805)
.|+.++|.|.+.. .+|. ..|.|+|+|..+........ ...++. +.|.|.....+|.|.|+|.|.|....
T Consensus 137 ~g~~~~L~C~~~g-~~P~~~~v~W~k~g~~l~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~ 211 (239)
T 1i1c_A 137 TQSQVSITCMVKG-FYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE 211 (239)
T ss_dssp GSSEEEEEEEEEE-EBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred cCCcEEEEEEEee-eECCCeEEEEEECCEECCCceecCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence 5889999999853 2444 69999999998854321111 122232 34556555556799999999997643
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-15 Score=129.39 Aligned_cols=97 Identities=15% Similarity=0.174 Sum_probs=83.5
Q ss_pred CCCCCeeeec---CCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEE
Q psy2166 688 DGRPPQFTSE---FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGV 764 (805)
Q Consensus 688 ~~~~P~~~~~---~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 764 (805)
...+|.|... +... .+.+|+.+.|.|.+. |.|.|.|.|+|+|..+. ..++.+....+...|.|.++..+|+|.
T Consensus 18 v~~~P~i~~~~~~~~~~-~v~~G~~~~l~C~~~--g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~ 93 (118)
T 2e7c_A 18 IAEPPKIRLPRHLRQTY-IRKVGEQLNLVVPFQ--GKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGE 93 (118)
T ss_dssp CSEEEEECCCTTTSSCE-EEESSSCEEEEEEEE--EESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEE
T ss_pred eccCCeEecCcccCCCE-EEECCCEEEEEEEEc--cCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEE
Confidence 3457888653 4555 899999999999999 99999999999999997 567777777777889999999999999
Q ss_pred EEEEEEcCCccEEEEEEEEEEEeC
Q psy2166 765 YTCRATNKWGQAEISVNLECVVWS 788 (805)
Q Consensus 765 Y~C~a~N~~G~~~~~~~l~V~~~~ 788 (805)
|+|.|.|..|..+.++.|.|...|
T Consensus 94 Y~C~a~N~~G~~~~~~~l~V~~~P 117 (118)
T 2e7c_A 94 YELSVQIENMKDTATIRIRVVEKA 117 (118)
T ss_dssp EEEEEECSSCEECCEEEEEEECCC
T ss_pred EEEEEEeCCCeEEEEEEEEEEcCC
Confidence 999999999999999999997543
|
| >1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-15 Score=148.79 Aligned_cols=171 Identities=11% Similarity=0.143 Sum_probs=109.9
Q ss_pred ccCCCeEEEEEEEeecC-CCCc-EEEEEECCEEccCCCc-eEEEEe----CcEEEEEEcccCcCCceEEEEEEEeCceee
Q psy2166 316 LKDGDSAHFECTLTPVN-DPEL-KVEWFHNGKPIFHKNR-VKMVSD----FGFVVMDIAYVQSHDSGEYVCRAWNKYGED 388 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~-~p~~-~v~W~~~g~~l~~~~~-~~~~~~----~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~ 388 (805)
+.+|+.++|.|.+.+.. .|.+ .|.|+|++..+..... ...... .....|.|.++..+|+|.|+|.+.|..+..
T Consensus 29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~~ 108 (239)
T 1i1c_A 29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGAFPA 108 (239)
T ss_dssp TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSSSSS
T ss_pred cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeEEEEEecccCCC
Confidence 67899999999998421 2655 8999999866542110 000000 123469999999999999999999988754
Q ss_pred EEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCC
Q psy2166 389 FTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPD 468 (805)
Q Consensus 389 ~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (805)
.....+..
T Consensus 109 ~~~~~v~~------------------------------------------------------------------------ 116 (239)
T 1i1c_A 109 PIEKSISK------------------------------------------------------------------------ 116 (239)
T ss_dssp CEEEEECC------------------------------------------------------------------------
T ss_pred CcEEEEec------------------------------------------------------------------------
Confidence 22222210
Q ss_pred ceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc--eE
Q psy2166 469 LVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR--YR 546 (805)
Q Consensus 469 ~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~--~~ 546 (805)
...+..+|.+.+...... ...|+.++|.|.+.++..+.+.|+|+|||+.+..... +.
T Consensus 117 --------------------~~~~~~~P~v~v~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~ 175 (239)
T 1i1c_A 117 --------------------PEGTPRGPQVYTMAPPKE-EMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPT 175 (239)
T ss_dssp --------------------CSSCCBCCEEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCE
T ss_pred --------------------CCCCCcCCEEEEECCChH-HhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCceecCce
Confidence 012346777776555443 3458899999999963333469999999999854321 11
Q ss_pred EEeeCCE---EEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 547 TFHDFGI---VILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 547 ~~~~~~~---~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
...++.. +.|.|.....+|.|.|+|.|.|....
T Consensus 176 ~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~ 211 (239)
T 1i1c_A 176 MDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLE 211 (239)
T ss_dssp ECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred ECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCC
Confidence 1222222 23556554445799999999998644
|
| >3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-15 Score=152.49 Aligned_cols=176 Identities=14% Similarity=0.162 Sum_probs=102.1
Q ss_pred CCceecCCCcEEEEEEEecCCCC--CceEEEEECC--Eec-----------------CCCCceEEEec--CcEEEEEEcc
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDP--NLKIEWIFNG--KPL-----------------ELGSRFKTTAD--FGFVTLDLTE 130 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p--~~~v~W~k~g--~~i-----------------~~~~~~~~~~~--~~~~~L~I~~ 130 (805)
+.+.+.+|+.++|.|.+. +.+ .+.|.|+|.. ..+ ...+|+.+..+ .+..+|.|.+
T Consensus 8 ~~~~v~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (257)
T 3bn9_D 8 GGGLVKPGGSLRLSCAAS--GFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSS 85 (257)
T ss_dssp CCEEECTTCEEEEEEEEE--SSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEES
T ss_pred CCEEEcCCCcEEEEEEec--cccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECC
Confidence 357899999999999998 343 5789999853 111 01357777664 4677999999
Q ss_pred cccCCCeEEEEEEEeCCe----------e---EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCC
Q psy2166 131 VYDRDQGIYTCRAWNLAG----------E---TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDS 197 (805)
Q Consensus 131 ~~~~D~G~Y~C~a~n~~g----------~---~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (805)
++.+|+|.|.|.+.+..| . ....+.|.|...+
T Consensus 86 v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~----------------------------------- 130 (257)
T 3bn9_D 86 LRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSAS----------------------------------- 130 (257)
T ss_dssp CCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSC-----------------------------------
T ss_pred CChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCC-----------------------------------
Confidence 999999999999998754 1 1123466665311
Q ss_pred CCCCCCceecccccccccCCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCCCcEEEEEEcC----eEEEEEcCCCCcc
Q psy2166 198 EDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRIRTVHAFG----MVVLEILGTKIED 272 (805)
Q Consensus 198 ~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~-~i~W~k~g~~l~~~~~~~~~~~~~----~~~L~i~~~~~~d 272 (805)
..+|.+....+.. .+.+|+.++|.|.+.. .+|.+ .|.|+++|..+...........++ .+.|.|.+...+|
T Consensus 131 --~~~P~v~~~~p~~-~~~~g~~v~L~C~~~g-~~P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~ 206 (257)
T 3bn9_D 131 --TKGPSVFPLAPSS-KSTSGGTAALGCLVKD-YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT 206 (257)
T ss_dssp --CBCCEECCCCC------------CCCEEEE-EBSSCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC------
T ss_pred --CcCCcEEEecCcc-cccCCCcEEEEEEEee-EECCCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC
Confidence 1234443322221 2568999999999852 34666 999999987643110000111122 2468888888778
Q ss_pred cEEEEEEEEcCCeeEEEEE
Q psy2166 273 TGVYTCRATNKWGQAEISV 291 (805)
Q Consensus 273 ~G~Y~C~~~n~~g~~~~~~ 291 (805)
|.|+|.|.|.........
T Consensus 207 -g~YtC~v~n~~~~~~~~~ 224 (257)
T 3bn9_D 207 -QTYICNVNHKPSNTKVDK 224 (257)
T ss_dssp --CEEEEEEEGGGTEEEEE
T ss_pred -CeEEEEEEecCCCcCEEE
Confidence 999999999765444333
|
| >1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ... | Back alignment and structure |
|---|
Probab=99.61 E-value=3.2e-15 Score=144.35 Aligned_cols=170 Identities=17% Similarity=0.211 Sum_probs=103.1
Q ss_pred cCCCeEEEEEEEeecCC--CCcEEEEEECCEEccCCCc-eEEEEeCcEE----EEEEcccCcCCceEEEEEEEeCceeeE
Q psy2166 317 KDGDSAHFECTLTPVND--PELKVEWFHNGKPIFHKNR-VKMVSDFGFV----VMDIAYVQSHDSGEYVCRAWNKYGEDF 389 (805)
Q Consensus 317 ~~g~~~~l~C~~~~~~~--p~~~v~W~~~g~~l~~~~~-~~~~~~~~~~----~l~i~~v~~~d~G~Y~C~a~n~~g~~~ 389 (805)
.+|+.++|.|.+.+... |.+.|.|+|++..+..... ......++.+ .|.|.....+|+|.|+|.|.|..+...
T Consensus 16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~ 95 (207)
T 1l6x_A 16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAP 95 (207)
T ss_dssp CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSC
T ss_pred ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCceEEEEEEcCcCCcc
Confidence 78999999999984211 2459999999987753211 0011111211 234444445569999999999877542
Q ss_pred EEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCCCc
Q psy2166 390 TRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDL 469 (805)
Q Consensus 390 ~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (805)
....+.+
T Consensus 96 ~~~~v~~------------------------------------------------------------------------- 102 (207)
T 1l6x_A 96 IEKTISK------------------------------------------------------------------------- 102 (207)
T ss_dssp EEEEECC-------------------------------------------------------------------------
T ss_pred eEEEecc-------------------------------------------------------------------------
Confidence 2222211
Q ss_pred eEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc--eEE
Q psy2166 470 VCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR--YRT 547 (805)
Q Consensus 470 ~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~--~~~ 547 (805)
...+..+|.+....+....+ .|..++|.|.+.+...+.+.|+|+|||..+..... +..
T Consensus 103 -------------------~~~~~~~P~v~~~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~ 162 (207)
T 1l6x_A 103 -------------------AKGQPREPQVYTLPPSRDEL-TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVL 162 (207)
T ss_dssp -------------------CCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEE
T ss_pred -------------------CCCCCcCCEEEEECCChHHh-cCCcEEEEEEEeCeECCCeEEEEEECCeeccCccccCceE
Confidence 00124567766654443323 45569999999963223459999999998864221 111
Q ss_pred EeeCCE---EEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 548 FHDFGI---VILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 548 ~~~~~~---~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
..++.. +.|.|.....+|.|.|+|.|.|....
T Consensus 163 ~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 197 (207)
T 1l6x_A 163 DSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 197 (207)
T ss_dssp CTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred CCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence 222222 23566655556899999999997654
|
| >4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=2.7e-15 Score=147.33 Aligned_cols=196 Identities=14% Similarity=0.121 Sum_probs=110.7
Q ss_pred CccccCCCCCC------CCcCCCeEEecCCCCce-ecCCCcEEEEEEEecCCC--C-CceEEEEECCEecCCCCce--EE
Q psy2166 50 GKYQRQPSGPE------ETFAKPVFIVPLKPEFK-LGEAQPLHLEAQVEPKND--P-NLKIEWIFNGKPLELGSRF--KT 117 (805)
Q Consensus 50 g~y~c~~~~~~------~~~~~p~~~~~~~~~~~-v~~G~~v~L~C~~~~~~~--p-~~~v~W~k~g~~i~~~~~~--~~ 117 (805)
|.|.|...... ....+|.+.+..+.... +..|+.++|.|.+.+. . | .+.|+|+|||.++...... ..
T Consensus 1 ~~~~~~~~~~~~~c~~~~~~~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~-~p~P~~i~v~W~k~g~~l~~~~~~~~~~ 79 (240)
T 4acp_A 1 GTKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDV-SHEDPEVKFNWYVDGVEVHNAKTKPREE 79 (240)
T ss_dssp ----------------------CEEEEECCCHHHHHSSSSCCEEEEEEESC-CC--CCCEEEEEETTEEECCCEECCCEE
T ss_pred CceeeeeeecCCCCCccccCCCCEEEEECcChHHhcccCCCcEEEEEEecc-ccCCCccEEEEEECCcccCCceeccceE
Confidence 55666544322 12335655555554555 6679999999999953 3 4 5589999999988543211 11
Q ss_pred EecC---cEEEEEEcccccCCCeEEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCC
Q psy2166 118 TADF---GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGV 194 (805)
Q Consensus 118 ~~~~---~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 194 (805)
..++ ..+.|.|.....+|+|.|+|.|.+..+.......+....
T Consensus 80 ~~~g~~~~~s~L~i~~~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~---------------------------------- 125 (240)
T 4acp_A 80 QYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAK---------------------------------- 125 (240)
T ss_dssp C---CEEEEEEEECCHHHHHHTCCEEEEEECC----CEEEEECCCC----------------------------------
T ss_pred CCCCeEEEEEEEEEechhccCCCEEEEEEEcCCCCccccccccccC----------------------------------
Confidence 1112 124789998888999999999999865332222222100
Q ss_pred CCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCCC-eEEEEEECCEEccCCCcEEEE-EEcC----eEEEEEcCC
Q psy2166 195 PDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQT-MTVEFLYNGKPIEASHRIRTV-HAFG----MVVLEILGT 268 (805)
Q Consensus 195 ~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~-~~i~W~k~g~~l~~~~~~~~~-~~~~----~~~L~i~~~ 268 (805)
....+|.+...+.... ..+|+.++|.|.+... +|. ..+.|+|+|..+......... ..++ .+.|.|...
T Consensus 126 ---~~~~~P~V~v~~~~~~-~~~g~~~~L~C~~~gf-~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~ 200 (240)
T 4acp_A 126 ---GQPREPQVYTLPPSRD-ELTKNQVSLTCLVKGF-YPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKS 200 (240)
T ss_dssp ---SCCBCCEEEEECCCGG-GGGSSEEEEEEEEEEE-BSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHH
T ss_pred ---CCCCCCEEEEECCChH-HhcCCceEEEEEEeEE-eCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChH
Confidence 0114566655544432 2358999999999532 444 589999999987532111111 1122 246777666
Q ss_pred CCcccEEEEEEEEcCCe
Q psy2166 269 KIEDTGVYTCRATNKWG 285 (805)
Q Consensus 269 ~~~d~G~Y~C~~~n~~g 285 (805)
..++.|.|+|.|.+...
T Consensus 201 ~~~~~~~ytC~V~h~~l 217 (240)
T 4acp_A 201 RWQQGNVFSCSVMHEAL 217 (240)
T ss_dssp HHHTTCCEEEEEECTTS
T ss_pred HhCCCCEEEEEEEECCC
Confidence 66789999999998753
|
| >3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.5e-15 Score=149.26 Aligned_cols=170 Identities=16% Similarity=0.191 Sum_probs=113.3
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEE--CCEEc------------cCC----CceEEEEe-CcEEEEEEcccCcCCceE
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFH--NGKPI------------FHK----NRVKMVSD-FGFVVMDIAYVQSHDSGE 376 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~--~g~~l------------~~~----~~~~~~~~-~~~~~l~i~~v~~~d~G~ 376 (805)
+.+|++++|.|.+. .+.+.+.|+| .+..+ ... .++.+..+ .+...|.|.+++.+|+|.
T Consensus 38 v~~G~~v~L~C~~~---~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~ 114 (268)
T 3pl6_D 38 TEKGKYVELRCDPI---SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERGDSAV 114 (268)
T ss_dssp EETTCCEEEEEBCB---TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCGGGCEE
T ss_pred ecCCCCEEEEEEeC---CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCcccCEE
Confidence 78999999999974 5778999998 22211 111 55665542 345689999999999999
Q ss_pred EEEEEEeC--ceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCce
Q psy2166 377 YVCRAWNK--YGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQS 454 (805)
Q Consensus 377 Y~C~a~n~--~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (805)
|.|.+.|. .+.......|.|.....
T Consensus 115 Y~C~~~~~~~~~~~~~~~~l~V~~~~~----------------------------------------------------- 141 (268)
T 3pl6_D 115 YLCATSALGDTQYFGPGTRLTVLEDLK----------------------------------------------------- 141 (268)
T ss_dssp EEEEEESSSSSCEECCCEEEEEESCGG-----------------------------------------------------
T ss_pred EEEEEecCCCceeeCCcEEEEEecCcc-----------------------------------------------------
Confidence 99999974 22333344566542110
Q ss_pred EEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCc-EEEEE
Q psy2166 455 AHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDL-VVEWF 533 (805)
Q Consensus 455 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~-~v~W~ 533 (805)
...+|.+....+....+.+|+.++|.|.+.+. .|.+ .++|+
T Consensus 142 -------------------------------------~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~-~p~~~~v~W~ 183 (268)
T 3pl6_D 142 -------------------------------------NVFPPEVAVFEPSEAEISHTQKATLVCLATGF-YPDHVELSWW 183 (268)
T ss_dssp -------------------------------------GCBCCEEEEECCCHHHHHHHSEEEEEEEEEEE-BSSCEEEEEE
T ss_pred -------------------------------------cccCCceEEeCCCcccccCCCceEEEEEECcc-cCCCeEEEEE
Confidence 12456665544444446779999999999953 3433 99999
Q ss_pred ECCEEccCCCceEE--E------eeCC---EEEEEEccCCCCC-CEEEEEEEEcCCcc
Q psy2166 534 YNGKKLPHGHRYRT--F------HDFG---IVILDILYCYEEN-SGVYECRATNKYGS 579 (805)
Q Consensus 534 ~~g~~l~~~~~~~~--~------~~~~---~~~L~i~~v~~~d-~G~Y~C~a~n~~g~ 579 (805)
|||+.+..+.+... . .++. .+.|.|.....+| +|.|+|.|.|....
T Consensus 184 ~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~ 241 (268)
T 3pl6_D 184 VNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS 241 (268)
T ss_dssp ESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred ECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence 99998865321110 0 1111 2357888877777 99999999987544
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-15 Score=129.28 Aligned_cols=95 Identities=22% Similarity=0.291 Sum_probs=87.6
Q ss_pred CCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEE
Q psy2166 688 DGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTC 767 (805)
Q Consensus 688 ~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 767 (805)
...+|.|...+.+. .+.+|+.+.|.|.+. |.|.|.|.|+|+|..+..+.++.+....+...|.|.++..+|+|.|+|
T Consensus 11 ~~~~~~i~~~p~~~-~v~~G~~v~L~C~~~--g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 87 (106)
T 1nct_A 11 TTLAARILTKPRSM-TVYEGESARFSCDTD--GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSV 87 (106)
T ss_dssp SSCCCEEEECCCCE-EESSSSCEECCEEEE--CSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEE
T ss_pred CCCCCEEEECCCCE-EEeCCCcEEEEEEEE--EcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEE
Confidence 34789999999998 999999999999998 999999999999999988889888777777899999999999999999
Q ss_pred EEEcCCccEEEEEEEEEE
Q psy2166 768 RATNKWGQAEISVNLECV 785 (805)
Q Consensus 768 ~a~N~~G~~~~~~~l~V~ 785 (805)
.|.|..|..+.++.|.|+
T Consensus 88 ~a~N~~G~~~~~~~l~V~ 105 (106)
T 1nct_A 88 VVENSEGKQEAEFTLTIQ 105 (106)
T ss_dssp CCBCSSCBCCEEEEEEEC
T ss_pred EEEeCCCeEEEEEEEEEE
Confidence 999999999999999884
|
| >1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.5e-14 Score=141.74 Aligned_cols=181 Identities=11% Similarity=0.146 Sum_probs=115.4
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEECC--EE---cc--------------CCCceEEEEeC--cEEEEEEcccCcCCc
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFHNG--KP---IF--------------HKNRVKMVSDF--GFVVMDIAYVQSHDS 374 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~g--~~---l~--------------~~~~~~~~~~~--~~~~l~i~~v~~~d~ 374 (805)
+.+|++++|.|.+.+...+.+.+.|+|+. .. +. ...++.+..+. +...|+|.+++.+|+
T Consensus 13 ~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~ 92 (242)
T 1hxm_B 13 KTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEKQDI 92 (242)
T ss_dssp EETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCGGGC
T ss_pred ecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCCCcccC
Confidence 78999999999997321266889999842 21 10 23566666543 467899999999999
Q ss_pred eEEEEEEEeCce-----e-e-EEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeeccee
Q psy2166 375 GEYVCRAWNKYG-----E-D-FTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVT 447 (805)
Q Consensus 375 G~Y~C~a~n~~g-----~-~-~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (805)
|.|.|.+.+... . . .....|.|...+.
T Consensus 93 G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~---------------------------------------------- 126 (242)
T 1hxm_B 93 ATYYCALWEAQQELGKKIKVFGPGTKLIITDKQL---------------------------------------------- 126 (242)
T ss_dssp EEEEEEEEEECSSTTCEEEEECCCEEEEEESSCC----------------------------------------------
T ss_pred EEEEEeeecCCccccccceeEcCcEEEEEccccc----------------------------------------------
Confidence 999999987531 1 1 1234566643210
Q ss_pred eecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCC-
Q psy2166 448 QLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDP- 526 (805)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p- 526 (805)
....+|...+..+....+.+|+.++|.|.+.+. .|
T Consensus 127 -------------------------------------------~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~-~P~ 162 (242)
T 1hxm_B 127 -------------------------------------------DADVSPKPTIFLPSIAETKLQKAGTYLCLLEKF-FPD 162 (242)
T ss_dssp -------------------------------------------CSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEE-SSC
T ss_pred -------------------------------------------CCCcCCCceEECCChhhcccCCCceEEEEEeeE-ECC
Confidence 000123322222222336789999999999953 35
Q ss_pred CcEEEEEECCE-EccCCCc-eEEEeeCC---EEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 527 DLVVEWFYNGK-KLPHGHR-YRTFHDFG---IVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 527 ~~~v~W~~~g~-~l~~~~~-~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
.+.|+|+++|. .+..... .....++. .+.|.|..+.. | |.|+|.|.|..+.......|.+
T Consensus 163 ~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~ 227 (242)
T 1hxm_B 163 VIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF 227 (242)
T ss_dssp CEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred CeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence 48999999987 5643210 01112222 24688887664 4 9999999999988755555544
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X | Back alignment and structure |
|---|
Probab=99.59 E-value=8.2e-15 Score=125.16 Aligned_cols=94 Identities=20% Similarity=0.178 Sum_probs=76.5
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeC-------cEEEEEEcCCCCCCC
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF-------GMVVLEILGTKIEDT 762 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~-------~~~~L~i~~v~~~d~ 762 (805)
.||+|. +. ....+..+.|.|.+. |+|.|.|+|+|||++|..+.++.+.... ...+|+|.++...|+
T Consensus 3 ~pP~I~--l~---~~~~~~~~~l~c~v~--G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~ 75 (126)
T 1he7_A 3 MPASVQ--LH---TAVEMHHWCIPFSVD--GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNN 75 (126)
T ss_dssp CCCCCC--CC---CCCCCCEEEEEEEEC--CSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGC
T ss_pred CCCEEE--cc---CCccCccEEEEEEEe--eeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCC
Confidence 467762 22 234678999999999 9999999999999999988776543221 245799999999999
Q ss_pred EEEEEEEEcCCccEEEEEEEEEEEeCCC
Q psy2166 763 GVYTCRATNKWGQAEISVNLECVVWSPS 790 (805)
Q Consensus 763 G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 790 (805)
|.|+|+|.|.+|.++.++.|.|...|-+
T Consensus 76 G~YtC~A~N~~G~~~~t~~l~v~~~P~~ 103 (126)
T 1he7_A 76 GNYTLLAANPFGQASASIMAAFMDNPFE 103 (126)
T ss_dssp EEEEEEEEETTEEEEEEEEECCCSCTTS
T ss_pred EEEEEEEEECCCeEEEEEEEEEEcCCCC
Confidence 9999999999999999999999765543
|
| >3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.3e-15 Score=123.15 Aligned_cols=98 Identities=24% Similarity=0.464 Sum_probs=87.8
Q ss_pred CCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEE
Q psy2166 491 PVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYE 570 (805)
Q Consensus 491 ~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 570 (805)
.+..+|.|...+.+.. +.+|+.++|.|.+. |.|.|.++|+|+|..+..+.++.+..+++...|.|.++..+|+|.|+
T Consensus 4 ~~~~~P~~~~~~~~~~-v~~G~~v~l~C~~~--g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~ 80 (103)
T 3qp3_A 4 TLDHAPRITLRMRSHR-VPCGQNTRFILNVQ--SKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYR 80 (103)
T ss_dssp TTCEEEEEEECCCCEE-EETTCCEEEEEEEE--EESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred CCCCCCEEEeCCcceE-EeCCCeEEEEEEEE--ecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEE
Confidence 4567888888776655 89999999999999 67888999999999999888888888888889999999999999999
Q ss_pred EEEEcCCcceEEEEEEEEeee
Q psy2166 571 CRATNKYGSDVTKASLKCVSK 591 (805)
Q Consensus 571 C~a~n~~g~~~~~~~l~V~~~ 591 (805)
|.|.|..|.....+.|.|...
T Consensus 81 C~a~N~~G~~~~~~~l~V~~~ 101 (103)
T 3qp3_A 81 AVCTNYKGEASDYATLDVTGG 101 (103)
T ss_dssp EEEEETTEEEEEEEEEEEECC
T ss_pred EEEEeCCCcEEEEEEEEEECC
Confidence 999999999999999998754
|
| >2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-15 Score=121.27 Aligned_cols=79 Identities=19% Similarity=0.281 Sum_probs=70.5
Q ss_pred CcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEE
Q psy2166 699 QHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEI 778 (805)
Q Consensus 699 ~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~ 778 (805)
.++ .+.+|+.+.|.|.+. | |.|.|+|+|||++|..+.++.+..+++...|.|.+++.+|+|.|+|.|.| ++.
T Consensus 4 t~v-~~~~G~~v~l~C~vs--~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~ 75 (84)
T 2lu7_A 4 TRV-RSTPGGDLELVVHLS--G-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----DSR 75 (84)
T ss_dssp CCE-EECTTSCEEEECCCS--C-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT----TCE
T ss_pred eEE-EEecCCCEEEEEEEC--C-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECC----EEE
Confidence 344 899999999999986 6 88899999999999999999998888888999999999999999999855 567
Q ss_pred EEEEEEE
Q psy2166 779 SVNLECV 785 (805)
Q Consensus 779 ~~~l~V~ 785 (805)
++.|+|+
T Consensus 76 ~a~l~V~ 82 (84)
T 2lu7_A 76 IFLVSVE 82 (84)
T ss_dssp EEEEEEC
T ss_pred EEEEEEE
Confidence 7888885
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-15 Score=130.21 Aligned_cols=100 Identities=27% Similarity=0.440 Sum_probs=87.1
Q ss_pred CCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEE-EeeCcEEEEEEcCCCCCCCEEEEE
Q psy2166 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT-VHAFGMVVLEILGTKIEDTGVYTC 767 (805)
Q Consensus 689 ~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C 767 (805)
..+|.|...+.+. .+.+|+.++|.|.+. |.|.|.|.|+|+|..+....+..+ ....+...|.|.+++.+|+|.|+|
T Consensus 7 ~~~P~i~~~~~~~-~v~~G~~v~l~C~~~--g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 83 (110)
T 2dm3_A 7 GFRPHFLQAPGDL-TVQEGKLCRMDCKVS--GLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTC 83 (110)
T ss_dssp CCCCEEEECCCEE-EEESSSCBCCEEEEE--CSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCE
T ss_pred CCCCcEEeCCCcE-EEeCCCEEEEEEEEE--EcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEE
Confidence 4689999999988 999999999999999 999999999999999887766544 334456789999999999999999
Q ss_pred EEEcCCccEEEEEEEEEEEeCCCc
Q psy2166 768 RATNKWGQAEISVNLECVVWSPSQ 791 (805)
Q Consensus 768 ~a~N~~G~~~~~~~l~V~~~~~~~ 791 (805)
.|.|..|..+.++.|.|...+.++
T Consensus 84 ~a~n~~g~~~~~~~l~V~~~p~~P 107 (110)
T 2dm3_A 84 IATNRAGQNSFSLELVVAAKESGP 107 (110)
T ss_dssp EEECSSCEEEECCEEEEECCCCSS
T ss_pred EEECCCCEEEEEEEEEEeCCCCCC
Confidence 999999999999999998765543
|
| >2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.5e-14 Score=144.13 Aligned_cols=172 Identities=16% Similarity=0.230 Sum_probs=116.5
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEECC--EEc-------------c----CCCceEEEEe-CcEEEEEEcccCcCCce
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFHNG--KPI-------------F----HKNRVKMVSD-FGFVVMDIAYVQSHDSG 375 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~g--~~l-------------~----~~~~~~~~~~-~~~~~l~i~~v~~~d~G 375 (805)
+.+|++++|.|.+. +.+.+.+.|+|++ ... . ...++.+..+ .....|.|.+++.+|+|
T Consensus 36 v~~G~~v~L~C~~~--~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G 113 (279)
T 2wbj_D 36 SKSGTSVKIECRSL--DFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDSS 113 (279)
T ss_dssp EETTSCEEEEEEES--SSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEEESSCCGGGCE
T ss_pred ecCCCeEEEEEEeC--CCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEEEccCCccCCE
Confidence 88999999999996 7788899999853 111 0 1346666553 45678999999999999
Q ss_pred EEEEEEEeCce------eeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeee
Q psy2166 376 EYVCRAWNKYG------EDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQL 449 (805)
Q Consensus 376 ~Y~C~a~n~~g------~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (805)
.|.|.+.|..+ .....+.|.|....
T Consensus 114 ~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~------------------------------------------------- 144 (279)
T 2wbj_D 114 FYICSARDLTSGANNEQFFGPGTRLTVTEDL------------------------------------------------- 144 (279)
T ss_dssp EEEEEEEETTCBTSCCEEECCCEEEEEESCG-------------------------------------------------
T ss_pred EEEEEEcccccCCccceeeCCCEEEEEecCC-------------------------------------------------
Confidence 99999998432 11122455554211
Q ss_pred cCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCC-Cc
Q psy2166 450 KEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDP-DL 528 (805)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p-~~ 528 (805)
....+|.+....+....+.+|+.++|.|.+.+. .| .+
T Consensus 145 -----------------------------------------~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~-~P~~~ 182 (279)
T 2wbj_D 145 -----------------------------------------KNVFPPEVAVFEPSEAEISHTQKATLVCLATGF-YPDHV 182 (279)
T ss_dssp -----------------------------------------GGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEE-BSSCE
T ss_pred -----------------------------------------CCCCCCEEEEECCCcccccCCCceEEEEEEeeE-cCCCc
Confidence 012467666554443336689999999999953 34 47
Q ss_pred EEEEEECCEEccCCCceE---EE-----eeCC---EEEEEEccCCCCC-CEEEEEEEEcCCcce
Q psy2166 529 VVEWFYNGKKLPHGHRYR---TF-----HDFG---IVILDILYCYEEN-SGVYECRATNKYGSD 580 (805)
Q Consensus 529 ~v~W~~~g~~l~~~~~~~---~~-----~~~~---~~~L~i~~v~~~d-~G~Y~C~a~n~~g~~ 580 (805)
.|+|+|||+++..+.... .. .++. .+.|.|.....+| .|.|+|.|.|.....
T Consensus 183 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~ 246 (279)
T 2wbj_D 183 ELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE 246 (279)
T ss_dssp EEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCT
T ss_pred EEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCC
Confidence 999999999986542211 00 1122 2358888777765 678999999976543
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.1e-15 Score=127.70 Aligned_cols=93 Identities=23% Similarity=0.292 Sum_probs=83.2
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
.||.|...+.+. .+.+|+.+.|.|.+. +. |.++|+|+|..+..+.++.+..+++...|.|.+++.+|+|.|+|.|
T Consensus 18 ~pp~~~~~~~~~-~v~~G~~v~l~C~~~--~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 92 (113)
T 2edh_A 18 LPIKFTEGLRNE-EATEGATAVLRCELS--KM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC 92 (113)
T ss_dssp SCCCEEECCCCC-EECTTSCEEEEEEES--SC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTCEEEEEEE
T ss_pred CCCcccccCCce-EEeCCCeEEEEEEEC--CC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhhCEEEEEEe
Confidence 567898888888 999999999999997 65 6899999999999999999988888889999999999999999999
Q ss_pred EcCCccEEEEEEEEEEEeCCCc
Q psy2166 770 TNKWGQAEISVNLECVVWSPSQ 791 (805)
Q Consensus 770 ~N~~G~~~~~~~l~V~~~~~~~ 791 (805)
|....++.|.|...|..+
T Consensus 93 ----~~~~~~~~l~V~~~p~~~ 110 (113)
T 2edh_A 93 ----GKERTSAMLTVRAMPSGP 110 (113)
T ss_dssp ----TTEEEEEEEEECCCCCSS
T ss_pred ----CCCCEEEEEEEeCCCCCc
Confidence 889999999997765543
|
| >3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-15 Score=150.05 Aligned_cols=174 Identities=12% Similarity=0.037 Sum_probs=113.0
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec------C---------CCC-ceEEEecCcEEEEEEccccc
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL------E---------LGS-RFKTTADFGFVTLDLTEVYD 133 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i------~---------~~~-~~~~~~~~~~~~L~I~~~~~ 133 (805)
.+..+.+.+|+.++|.|.+. +.+.+.|.|+|. +... . ..+ |+.+..++... |.|.+++.
T Consensus 7 ~p~~v~v~~G~~v~L~C~~~--~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~~ 83 (253)
T 3to4_D 7 NPRWRLVPRGQAVNLRCILK--NSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVANM 83 (253)
T ss_dssp ECSEEEEESSCCEEEEEECS--CTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEESC
T ss_pred CCCeEEEeCCCcEEEEEEeC--CCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCCh
Confidence 34467899999999999987 577789999982 2110 0 012 66666554433 99999999
Q ss_pred CCCeEEEEEEEeCCe------eEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceec
Q psy2166 134 RDQGIYTCRAWNLAG------ETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTS 207 (805)
Q Consensus 134 ~D~G~Y~C~a~n~~g------~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 207 (805)
+|+|.|+|.+.+..+ .....+.|.|..... ...+|.+..
T Consensus 84 ~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~-----------------------------------~~~~P~v~~ 128 (253)
T 3to4_D 84 SQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLK-----------------------------------NVFPPEVAV 128 (253)
T ss_dssp SSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCST-----------------------------------TCBCCEEEE
T ss_pred hhCeEEEEEEecCCCCcccceEECCCEEEEEecCCC-----------------------------------CCCCCeEEE
Confidence 999999999987543 112234566653210 013455544
Q ss_pred ccccccccCCCceEEEEEEEeeCCCCCe-EEEEEECCEEccCCCcEEEEE-------EcC----eEEEEEcCCCCcc-cE
Q psy2166 208 EFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRIRTVH-------AFG----MVVLEILGTKIED-TG 274 (805)
Q Consensus 208 ~~~~~~~v~~g~~~~l~C~~~~~~~p~~-~i~W~k~g~~l~~~~~~~~~~-------~~~----~~~L~i~~~~~~d-~G 274 (805)
..+....+.+|+.++|.|.+.. .+|.+ .+.|+|+|..+.......... .++ .+.|.|.....+| .|
T Consensus 129 ~~~~~~~~~~g~~~~L~C~~~g-~~P~~i~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~ 207 (253)
T 3to4_D 129 FEPSEAEISHTQKATLVCLATG-FYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRN 207 (253)
T ss_dssp EECCHHHHHHHSEEEEEEEEEE-EBSSCEEEEEEETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTC
T ss_pred eCCChhhcccCCceEEEEEEce-EECCcEEEEEEECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCC
Confidence 3333323456789999999853 24554 999999999986532211000 122 2468888777777 77
Q ss_pred EEEEEEEcCC
Q psy2166 275 VYTCRATNKW 284 (805)
Q Consensus 275 ~Y~C~~~n~~ 284 (805)
.|+|.|.|..
T Consensus 208 ~ytC~v~h~~ 217 (253)
T 3to4_D 208 HFRCQVQFYG 217 (253)
T ss_dssp EEEEEEEECC
T ss_pred EEEEEEEeCC
Confidence 9999999864
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.7e-15 Score=124.79 Aligned_cols=91 Identities=26% Similarity=0.369 Sum_probs=79.7
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccC-CCCeEEEeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEA-SHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
.||.|...+.+. .+.+|+.+.|.|.+. |.|.|.|.|+|+|..+.. ..++.+. ..+ .|.|.+++.+|+|.|+|.
T Consensus 7 ~~P~i~~~p~~~-~v~~G~~~~l~C~~~--g~p~p~v~W~~~~~~~~~~~~~~~~~-~~~--~L~i~~v~~~d~G~Y~C~ 80 (100)
T 2edj_A 7 GPPIILQGPANQ-TLAVDGTALLKCKAT--GDPLPVISWLKEGFTFPGRDPRATIQ-EQG--TLQIKNLRISDTGTYTCV 80 (100)
T ss_dssp SSCEEEECCCCE-EEESSSEEEECCEEE--CSSCCEEEEEESSSEESSSCSSCEEC-TTC--CEEEESCCTTTCCEEEEE
T ss_pred CCCEEEeCcCCE-EEcCCCcEEEEEEEE--EcCCCEEEEEECCEECCCCCCCEEEc-CCC--EEEEccCCcccCEEEEEE
Confidence 689999999888 999999999999999 999999999999988874 3444433 333 699999999999999999
Q ss_pred EEcCCccEEEEEEEEEEE
Q psy2166 769 ATNKWGQAEISVNLECVV 786 (805)
Q Consensus 769 a~N~~G~~~~~~~l~V~~ 786 (805)
|.|..|....++.|.|..
T Consensus 81 a~n~~g~~~~~~~l~V~~ 98 (100)
T 2edj_A 81 ATSSSGETSWSAVLDVTE 98 (100)
T ss_dssp EECSSCCCBCCEEEEEES
T ss_pred EEcCCCCEEEEEEEEEec
Confidence 999999999999999864
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-15 Score=128.13 Aligned_cols=95 Identities=19% Similarity=0.252 Sum_probs=73.8
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
.+|.|...+.+. .+.+|+.+.|.|.+. |.|.|.+.|+|+|..+....++.+....+ .|.|.++..+|+|.|+|.|
T Consensus 9 ~~P~~~~~~~~~-~v~~G~~v~l~C~~~--g~p~p~i~W~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~a 83 (108)
T 3kvq_A 9 VAPTITGNLENQ-TTSIGESIEVSCTAS--GNPPPQIMWFKDNETLVEDSGIVLKDGNR--NLTIRRVRKEDEGLYTCQA 83 (108)
T ss_dssp --CCCBSCCCCE-EEETTCCEEEECBCC------CCEEEEESSSBCCCBTTEEEETTTT--EEEECSCCGGGCEEEEEEE
T ss_pred CCCceecCCCCe-EEeCCCeEEEEEECc--CcCCCeEEEEECCeEcccCCCeEEeCCCc--EEEEeecCcccCEEEEEEE
Confidence 578888888888 999999999999998 99999999999999998887776554444 7999999999999999999
Q ss_pred EcCCccEEEEEEEEEEEeCC
Q psy2166 770 TNKWGQAEISVNLECVVWSP 789 (805)
Q Consensus 770 ~N~~G~~~~~~~l~V~~~~~ 789 (805)
.|..|....++.|.|...+.
T Consensus 84 ~n~~g~~~~~~~l~V~~~~~ 103 (108)
T 3kvq_A 84 CSVLGCAKVEAFFIIEGAQE 103 (108)
T ss_dssp C----CEEEEEEEEEEC---
T ss_pred EeCCCceEEEEEEEEeCCCc
Confidence 99999999999999976543
|
| >3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ... | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-14 Score=143.30 Aligned_cols=183 Identities=17% Similarity=0.190 Sum_probs=114.7
Q ss_pred CCCceecCCCcEEEEEEEecCCCC--CceEEEEEC--CE---ec---C----------------CCCceEEEec--CcEE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDP--NLKIEWIFN--GK---PL---E----------------LGSRFKTTAD--FGFV 124 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p--~~~v~W~k~--g~---~i---~----------------~~~~~~~~~~--~~~~ 124 (805)
+..+.+.+|++|+|.|.+.+...+ ...+.|+|. +. .+ . ..+|+.+..+ .+.+
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 86 (239)
T 3tv3_H 7 SGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLV 86 (239)
T ss_dssp ESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEE
T ss_pred CCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEE
Confidence 346789999999999999842222 458999983 21 11 1 1246766653 4677
Q ss_pred EEEEcccccCCCeEEEEEEEeCCe-----------e--EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCC
Q psy2166 125 TLDLTEVYDRDQGIYTCRAWNLAG-----------E--TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQP 191 (805)
Q Consensus 125 ~L~I~~~~~~D~G~Y~C~a~n~~g-----------~--~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 191 (805)
+|.|.+++.+|+|.|.|.+.+..+ . ......|.|....
T Consensus 87 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~----------------------------- 137 (239)
T 3tv3_H 87 FLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSAS----------------------------- 137 (239)
T ss_dssp EEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCC-----------------------------
T ss_pred EEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCC-----------------------------
Confidence 899999999999999999986521 1 1122345553211
Q ss_pred CCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcC----eEEEEEcC
Q psy2166 192 AGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG----MVVLEILG 267 (805)
Q Consensus 192 ~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~----~~~L~i~~ 267 (805)
..+|.+....+.. .+.+|+.++|.|.+.....+...+.|+++|..+...........++ .+.|.|..
T Consensus 138 --------~~~P~v~~~~~~~-~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~ 208 (239)
T 3tv3_H 138 --------TKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPS 208 (239)
T ss_dssp --------CBCCEEEEECCCC-CC--TTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEG
T ss_pred --------CcCCEEEEECCCh-hhccCCcEEEEEEEeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEch
Confidence 1345554333332 2557999999999853222345689999987542111000111111 24688988
Q ss_pred CCCcccEEEEEEEEcCCeeEEEEEEEE
Q psy2166 268 TKIEDTGVYTCRATNKWGQAEISVNLE 294 (805)
Q Consensus 268 ~~~~d~G~Y~C~~~n~~g~~~~~~~l~ 294 (805)
...+| |.|+|.|.|..+.......+.
T Consensus 209 ~~~~~-~~ytC~v~h~~~~~~~~~~l~ 234 (239)
T 3tv3_H 209 SSLGT-QTYICNVNHKPSNTKVDKRVE 234 (239)
T ss_dssp GGTTT-CCCEEEEEEGGGTEEEEEECC
T ss_pred hhcCC-CEEEEEEEECCCCceEEEEec
Confidence 88888 999999999877666555544
|
| >1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=139.80 Aligned_cols=173 Identities=13% Similarity=0.167 Sum_probs=110.2
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEECC--EEcc----------------CCCceEEEEe--CcEEEEEEcccCcCCce
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFHNG--KPIF----------------HKNRVKMVSD--FGFVVMDIAYVQSHDSG 375 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~g--~~l~----------------~~~~~~~~~~--~~~~~l~i~~v~~~d~G 375 (805)
+.+|++++|.|.+.+...+.+.+.|+|+. ..+. ...++.+..+ .+...|+|.+++.+|+|
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G 91 (215)
T 1c5d_H 12 VQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDTA 91 (215)
T ss_dssp ECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGGGCE
T ss_pred ecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCcccCE
Confidence 78999999999997311235789999852 2110 1246666553 34678999999999999
Q ss_pred EEEEEEEeCcee---eEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCC
Q psy2166 376 EYVCRAWNKYGE---DFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEG 452 (805)
Q Consensus 376 ~Y~C~a~n~~g~---~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (805)
.|.|.+.|..+. ....+.|.|...
T Consensus 92 ~Y~C~~~~~~~~~~~~~~~~~L~V~~~----------------------------------------------------- 118 (215)
T 1c5d_H 92 IYFCTREDGWNYFDYWGPGTMVTVSSA----------------------------------------------------- 118 (215)
T ss_dssp EEEEEECCSSSCSCCBCCCEEEEECSS-----------------------------------------------------
T ss_pred EEEEEEecCCcccceEcCCEEEEecCC-----------------------------------------------------
Confidence 999999886421 112345655311
Q ss_pred ceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCc-EEE
Q psy2166 453 QSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDL-VVE 531 (805)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~-~v~ 531 (805)
...+|.+....+... +.+|+.++|.|.+.+ ..|.+ .|+
T Consensus 119 ---------------------------------------~~~~P~i~~~~~~~~-~~~g~~v~L~C~~~g-~~P~p~~v~ 157 (215)
T 1c5d_H 119 ---------------------------------------QTTAPSVYPLAPGCG-DTTSSTVTLGCLVKG-YFPEPVTVT 157 (215)
T ss_dssp ---------------------------------------CCBCCCEEEECCCSS-CCCCSSEEEEEEEEE-EBSSCCEEE
T ss_pred ---------------------------------------CCCCCeEEeccCChh-hccCCcEEEEEEEee-eEcCCcEEE
Confidence 123566655443333 678999999999995 23666 999
Q ss_pred EEECCEEccCCCceEEEeeCCEEEE--EEccCCCCCCEEEEEEEEcCCcceEEEE
Q psy2166 532 WFYNGKKLPHGHRYRTFHDFGIVIL--DILYCYEENSGVYECRATNKYGSDVTKA 584 (805)
Q Consensus 532 W~~~g~~l~~~~~~~~~~~~~~~~L--~i~~v~~~d~G~Y~C~a~n~~g~~~~~~ 584 (805)
|+++|..+..........+ +...+ .|.....+| |.|+|.|.|..|......
T Consensus 158 W~~~g~~~~~~~~~~~~~~-g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~~~ 210 (215)
T 1c5d_H 158 WNSGALSSDVHTFPAVLQS-GLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKVDK 210 (215)
T ss_dssp EGGGTTCCSCCBCCCEEET-TEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEEEE
T ss_pred EccCCccCceEecCcccCC-CCEEEEEEEecccCCC-CeEEEEEEeCCCCccEEE
Confidence 9999876532111111122 32221 223344456 999999999988765443
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.3e-15 Score=128.74 Aligned_cols=100 Identities=18% Similarity=0.152 Sum_probs=79.1
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCC---CCeEEEEEECCEE-cc--CCCCeEEEe--eC----cEEEEEEcCCC
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGD---QTMTVEFLYNGKP-IE--ASHRIRTVH--AF----GMVVLEILGTK 758 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~---p~~~v~W~~~g~~-l~--~~~~~~~~~--~~----~~~~L~i~~v~ 758 (805)
-|.|...|.+. .+.+|+.++|.|.+. |. |.|.|+|||++.. +. ...++.+.. +. ....|+|.+++
T Consensus 7 ~~~F~~~P~~v-~V~eG~~v~L~C~v~--g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~ 83 (126)
T 2dav_A 7 GILFIEKPQGG-TVKVGEDITFIAKVK--AEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAK 83 (126)
T ss_dssp SCSCCSCCCCC-EEETTCCEEEEEEEE--CCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCC
T ss_pred ccEEEEcCCCe-EEeCCCCEEEEEEEe--ccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCC
Confidence 36788888888 999999999999998 64 8999999997521 11 234555421 11 24689999999
Q ss_pred CCCCEEEEEEEEcCCccEEEEEEEEEEEeCCCcce
Q psy2166 759 IEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTK 793 (805)
Q Consensus 759 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~~ 793 (805)
.+|+|.|+|+|.|..|.++.++.|+|++.++..+.
T Consensus 84 ~~DaG~Y~Cevsn~~g~~~~~~~L~V~~~~~~~p~ 118 (126)
T 2dav_A 84 DNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPN 118 (126)
T ss_dssp TTSCEEEEEEEECSSCEEEECCEEEEECCCCSCCC
T ss_pred cccCEEEEEEEEeCCCcEEEEEEEEEEecCCCCCe
Confidence 99999999999999999999999999985554333
|
| >3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.3e-15 Score=147.96 Aligned_cols=175 Identities=16% Similarity=0.193 Sum_probs=104.4
Q ss_pred ceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEEC--CEEcc---C-C-------------CcEEEE--EEcCeEE
Q psy2166 204 QFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN--GKPIE---A-S-------------HRIRTV--HAFGMVV 262 (805)
Q Consensus 204 ~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~--g~~l~---~-~-------------~~~~~~--~~~~~~~ 262 (805)
.+...+... .+.+|++++|.|.+ .+.+.+.+.|||. +.... . . .+.... ...+...
T Consensus 4 ~v~~~p~~~-~v~~G~~v~L~C~~--~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (259)
T 3omz_A 4 NLEGRTKSV-IRQTGSSAEITCDL--AEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLR 80 (259)
T ss_dssp -------CE-EEETTCCEEEECCC-------CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCE
T ss_pred ccccCCcee-EecCCCcEEEEEEE--ccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEE
Confidence 333333333 47899999999988 5667789999982 21110 0 0 011111 1223457
Q ss_pred EEEcCCCCcccEEEEEEEEcCCe---eEEEEEEEEEeccCCCC------------CCeEEecCCCcccccCCCeEEEEEE
Q psy2166 263 LEILGTKIEDTGVYTCRATNKWG---QAEISVNLECVDKSKGQ------------PPKFTSHIKSLEGLKDGDSAHFECT 327 (805)
Q Consensus 263 L~i~~~~~~d~G~Y~C~~~n~~g---~~~~~~~l~v~~~~~~~------------~p~~~~~~~~~~~~~~g~~~~l~C~ 327 (805)
|.|.+++.+|+|.|.|.+.+..+ .......|.|....... .+.+...+... .+.+|++++|.|.
T Consensus 81 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~-~v~~G~~v~L~C~ 159 (259)
T 3omz_A 81 MILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSV-SMPVRKAVTLNCL 159 (259)
T ss_dssp EEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCE-EEETTCCEEECCE
T ss_pred EEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEE-EEcCCCCEEEEEE
Confidence 99999999999999999998765 33344556665432111 23444444433 3889999999998
Q ss_pred EeecCCCCcEEEEEECC--EEcc------------CCCceEEEE--eCcEEEEEEcccCcCCceEEEEEEEe
Q psy2166 328 LTPVNDPELKVEWFHNG--KPIF------------HKNRVKMVS--DFGFVVMDIAYVQSHDSGEYVCRAWN 383 (805)
Q Consensus 328 ~~~~~~p~~~v~W~~~g--~~l~------------~~~~~~~~~--~~~~~~l~i~~v~~~d~G~Y~C~a~n 383 (805)
+.+ ..+.+.+.|+|++ ..+. ...++.+.. ......|+|.+++.+|+|.|.|.+.+
T Consensus 160 ~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 230 (259)
T 3omz_A 160 YET-SWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGE 230 (259)
T ss_dssp EEC-CCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEES
T ss_pred CCC-ccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeC
Confidence 872 3478899999843 1110 123444331 12345699999999999999999985
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=120.25 Aligned_cols=87 Identities=20% Similarity=0.360 Sum_probs=78.2
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
.||.|...+.+. .+.+|+.+.|.|.+. |.| |.|.|+|+|..+..+.++.+. ++ .|.|.+++.+|+|.|+|.|
T Consensus 8 ~pp~~~~~~~~~-~v~~G~~v~l~C~~~--g~p-p~i~W~k~g~~~~~~~~~~~~--~~--~L~i~~~~~~D~G~Y~C~a 79 (95)
T 2ckn_A 8 QPWGVPVEVESL-LVHPGDLLQLRCRLR--DDV-QSINWLRDGVQLVESNRTRIT--GE--EVEVRDSIPADSGLYACVT 79 (95)
T ss_dssp CSCCBTTBBCCE-EECTTSCEEEECCEE--SSC-CEEEEEBTTBCCCCCSSEEEC--SS--EEEESSCCGGGSEEEEEEE
T ss_pred CCCEEEcCcceE-EEcCCCeEEEEEECC--CCC-CceEEEECCEecCCCCCEEEe--CC--EEEECCCChHHCEEEEEEe
Confidence 678888888888 999999999999999 888 799999999999888776643 33 7999999999999999999
Q ss_pred EcCCccEEEEEEEEE
Q psy2166 770 TNKWGQAEISVNLEC 784 (805)
Q Consensus 770 ~N~~G~~~~~~~l~V 784 (805)
.|..|..+.++.|.|
T Consensus 80 ~n~~g~~~~~~~l~V 94 (95)
T 2ckn_A 80 SSPSGSDTTYFSVNV 94 (95)
T ss_dssp EETTEEEEEEEEEEE
T ss_pred ccCCCcEEEEEEEEE
Confidence 999999999998887
|
| >3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E | Back alignment and structure |
|---|
Probab=99.56 E-value=8e-15 Score=145.95 Aligned_cols=169 Identities=13% Similarity=0.197 Sum_probs=97.9
Q ss_pred ccCCCeEEEEEEEeecCCC--CcEEEEEECC--EE---c--------------cCCCceEEEEe--CcEEEEEEcccCcC
Q psy2166 316 LKDGDSAHFECTLTPVNDP--ELKVEWFHNG--KP---I--------------FHKNRVKMVSD--FGFVVMDIAYVQSH 372 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p--~~~v~W~~~g--~~---l--------------~~~~~~~~~~~--~~~~~l~i~~v~~~ 372 (805)
+.+|++++|.|.+. +.+ .+.+.|+|.. .. + ....++.+..+ .+...|.|.+++.+
T Consensus 12 v~~G~~v~L~C~~~--~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~ 89 (257)
T 3bn9_D 12 VKPGGSLRLSCAAS--GFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRAE 89 (257)
T ss_dssp ECTTCEEEEEEEEE--SSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCGG
T ss_pred EcCCCcEEEEEEec--cccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCChh
Confidence 78999999999997 544 5789999853 11 1 01346666654 45678999999999
Q ss_pred CceEEEEEEEeCcee---------e--E--EEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCce
Q psy2166 373 DSGEYVCRAWNKYGE---------D--F--TRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKF 439 (805)
Q Consensus 373 d~G~Y~C~a~n~~g~---------~--~--~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (805)
|+|.|.|.+.+..|. . . ..+.|.|...
T Consensus 90 DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~---------------------------------------- 129 (257)
T 3bn9_D 90 DTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSA---------------------------------------- 129 (257)
T ss_dssp GCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSS----------------------------------------
T ss_pred hCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCC----------------------------------------
Confidence 999999999987641 1 1 2245555321
Q ss_pred eeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEE
Q psy2166 440 ITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEAR 519 (805)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~ 519 (805)
...+|.+....+... +.+|+.++|.|.
T Consensus 130 ----------------------------------------------------~~~~P~v~~~~p~~~-~~~g~~v~L~C~ 156 (257)
T 3bn9_D 130 ----------------------------------------------------STKGPSVFPLAPSSK-STSGGTAALGCL 156 (257)
T ss_dssp ----------------------------------------------------CCBCCEECCCCC------------CCCE
T ss_pred ----------------------------------------------------CCcCCcEEEecCccc-ccCCCcEEEEEE
Confidence 023455544333222 578999999999
Q ss_pred EeeCCCCCc-EEEEEECCEEccCCCceEEEeeCC----EEEEEEccCCCCCCEEEEEEEEcCCcceE
Q psy2166 520 LTPVTDPDL-VVEWFYNGKKLPHGHRYRTFHDFG----IVILDILYCYEENSGVYECRATNKYGSDV 581 (805)
Q Consensus 520 v~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~ 581 (805)
+.+ ..|.+ .|+|+++|..+.......+...++ .+.|.|..+..+| |.|+|.|.|......
T Consensus 157 ~~g-~~P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~ 221 (257)
T 3bn9_D 157 VKD-YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK 221 (257)
T ss_dssp EEE-EBSSCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGTEE
T ss_pred Eee-EECCCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCcC
Confidence 995 24655 999999998643210000111122 2358888887778 999999999755433
|
| >2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.5e-14 Score=122.99 Aligned_cols=98 Identities=21% Similarity=0.342 Sum_probs=86.4
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEE
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECR 572 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 572 (805)
..+|.|...+.... +.+|+.++|.|.+. |.|.+.++|+|+|..+..+.++.+........|.|.+++.+|+|.|+|.
T Consensus 5 ~~pp~i~~~~~~~~-v~~G~~v~l~C~~~--g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (114)
T 2cqv_A 5 SSGPQIIQFPEDQK-VRAGESVELFGKVT--GTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLL 81 (114)
T ss_dssp CCCCEESCCCCSEE-EETTCCEEEEEEEE--SSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEE
T ss_pred CCCCEEEeCCCCeE-EeCCCeEEEEEEEE--cCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEE
Confidence 46777776655554 89999999999999 7899999999999999888888887777778899999999999999999
Q ss_pred EEcCCcceEEEEEEEEeeeee
Q psy2166 573 ATNKYGSDVTKASLKCVSKTN 593 (805)
Q Consensus 573 a~n~~g~~~~~~~l~V~~~~~ 593 (805)
|.|..|.....+.|.|...+.
T Consensus 82 a~N~~g~~~~~~~l~V~~~p~ 102 (114)
T 2cqv_A 82 VENKLGSRQAQVNLTVVDKPD 102 (114)
T ss_dssp EECSSCEEECCEEEEEECSCS
T ss_pred EEECCCcEEEEEEEEEECCCC
Confidence 999999999999999987665
|
| >3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ... | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-14 Score=142.89 Aligned_cols=183 Identities=16% Similarity=0.168 Sum_probs=113.0
Q ss_pred CCceecCCCcEEEEEEEecC--CCCCceEEEEECC--E---ec-----C-----------CCCceEEEec--CcEEEEEE
Q psy2166 74 PEFKLGEAQPLHLEAQVEPK--NDPNLKIEWIFNG--K---PL-----E-----------LGSRFKTTAD--FGFVTLDL 128 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~--~~p~~~v~W~k~g--~---~i-----~-----------~~~~~~~~~~--~~~~~L~I 128 (805)
+.+.+.+|++|+|.|.+.+. +.+...|.|+|.. . .+ . ..+|+.+..+ .+.++|.|
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 87 (232)
T 3qhz_H 8 GPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTM 87 (232)
T ss_dssp CCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEE
T ss_pred CCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEE
Confidence 35789999999999999732 1233445999831 1 11 0 1247777654 36788999
Q ss_pred cccccCCCeEEEEEEEeCC--------eeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCC
Q psy2166 129 TEVYDRDQGIYTCRAWNLA--------GETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDG 200 (805)
Q Consensus 129 ~~~~~~D~G~Y~C~a~n~~--------g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (805)
.+++.+|+|.|.|.+.+.. ........|.|.... .
T Consensus 88 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~-------------------------------------~ 130 (232)
T 3qhz_H 88 TNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSAS-------------------------------------T 130 (232)
T ss_dssp CSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSC-------------------------------------C
T ss_pred CcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCC-------------------------------------C
Confidence 9999999999999998763 112223456654211 1
Q ss_pred CCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcC----eEEEEEcCCCCcccEEE
Q psy2166 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG----MVVLEILGTKIEDTGVY 276 (805)
Q Consensus 201 ~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y 276 (805)
.+|.+....+.. .+.+|+.++|.|.+.....+...+.|+++|..+...........++ .+.|.|.....+| |.|
T Consensus 131 ~~P~v~~~~~~~-~~~~g~~v~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~y 208 (232)
T 3qhz_H 131 KGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTY 208 (232)
T ss_dssp BCCEEEEECC--------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCC
T ss_pred CCCEEEEecccc-cccCCCcEEEEEEEeeEeCCCeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEE
Confidence 345554322222 2567999999999853233356789999986442111000111111 2468898888888 999
Q ss_pred EEEEEcCCeeEEEEEEEEE
Q psy2166 277 TCRATNKWGQAEISVNLEC 295 (805)
Q Consensus 277 ~C~~~n~~g~~~~~~~l~v 295 (805)
+|.|.|..+.......+.+
T Consensus 209 tC~v~~~~~~~~~~~~l~~ 227 (232)
T 3qhz_H 209 ICNVNHKPSNTKVDKRVEP 227 (232)
T ss_dssp EEEEEEGGGTEEEEEECCC
T ss_pred EEEEEeCCCCccEEEEeCC
Confidence 9999998877766665543
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=6e-15 Score=127.79 Aligned_cols=94 Identities=24% Similarity=0.346 Sum_probs=82.3
Q ss_pred CCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccC-CCCeEEEeeCcEEEEEEcCCCCCCCEEEEE
Q psy2166 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEA-SHRIRTVHAFGMVVLEILGTKIEDTGVYTC 767 (805)
Q Consensus 689 ~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 767 (805)
..||.|...+.+. .+.+|+.+.|.|.+. |.|.+.|.|+|+|..+.. ..++.+.. .+ .|.|.+++.+|+|.|+|
T Consensus 6 ~~pP~i~~~p~~~-~v~~G~~v~l~C~~~--g~p~p~i~W~k~g~~~~~~~~~~~~~~-~~--~L~i~~v~~~D~G~Y~C 79 (118)
T 2eo9_A 6 SGPPVIRQGPVNQ-TVAVDGTFVLSCVAT--GSPVPTILWRKDGVLVSTQDSRIKQLE-NG--VLQIRYAKLGDTGRYTC 79 (118)
T ss_dssp CCSCCCSBCCCCE-EEETTCEEEEECBCC--CSSCCEEEEEESSSBCCTTSTTEEEEE-TT--EEEEESCCGGGCCCEEE
T ss_pred CCCCEEEcCCCCE-EEcCCCeEEEEEEEE--ecCCCEEEEEECCEECcCCCCeEEEcc-CC--EEEEccCCcCCCEEEEE
Confidence 4689999888888 999999999999998 999999999999998875 45555443 44 69999999999999999
Q ss_pred EEEcCCccEEEEEEEEEEEeC
Q psy2166 768 RATNKWGQAEISVNLECVVWS 788 (805)
Q Consensus 768 ~a~N~~G~~~~~~~l~V~~~~ 788 (805)
.|.|..|....++.|.|...+
T Consensus 80 ~a~n~~g~~~~~~~l~V~~~~ 100 (118)
T 2eo9_A 80 IASTPSGEATWSAYIEVQEFG 100 (118)
T ss_dssp EEECSSCEEEEECCEEEECCS
T ss_pred EEEcCCCcEEEEEEEEEEeCC
Confidence 999999999999999997654
|
| >3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=163.48 Aligned_cols=168 Identities=17% Similarity=0.217 Sum_probs=118.7
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecC------------CCCceEEEecCcEEEEEEcccccCCCeEEE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLE------------LGSRFKTTADFGFVTLDLTEVYDRDQGIYT 140 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~------------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 140 (805)
...+.+.+|++++|.|.+.. +.|.+.|+|+|++..+. ...|+.+..++ +|.|.+++.+|+|.|+
T Consensus 373 ~~~~~~~~G~~v~L~C~~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~L~i~~v~~~D~G~Y~ 448 (581)
T 3o3u_N 373 AQNITARIGEPLVLKCKGAP-KKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNG---SLFLPAVGIQDEGIFR 448 (581)
T ss_dssp CEEEEEETTSCEEECCTTCC-SSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTS---CEEESSCCGGGCEEEE
T ss_pred hcccceecCCcEEEeeeecC-CCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCc---eEEEeccccccCeEEE
Confidence 34578899999999999832 58888999999876321 12355555444 7999999999999999
Q ss_pred EEEEeCCeeE-EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCCCc
Q psy2166 141 CRAWNLAGET-FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGE 219 (805)
Q Consensus 141 C~a~n~~g~~-~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~ 219 (805)
|.+.|..|.. .....|.|..++ .+|.+...... ....+.
T Consensus 449 C~~~n~~~~~~~~~~~l~V~~~~--------------------------------------~~p~i~~~~~~--~~~~~~ 488 (581)
T 3o3u_N 449 CQAMNRNGKETKSNYRVRVYQIP--------------------------------------GKPEIVDSASE--LTAGVP 488 (581)
T ss_dssp EEEECTTSCEEEEEEEEEEEBCC--------------------------------------CCCEEESCCSE--ECTTSC
T ss_pred EEEEcCCCceeEEEEEEEEEcCC--------------------------------------CCCEEEcCCcc--cccCCc
Confidence 9999998876 667788886543 22444333222 133344
Q ss_pred eEEEEEEEeeCCCCCeEEEEEECCEEccCCC-cEEEEE------EcC----eEEEEEcCCC-CcccEEEEEEEEcCCe
Q psy2166 220 IAHFEASLIPVGDQTMTVEFLYNGKPIEASH-RIRTVH------AFG----MVVLEILGTK-IEDTGVYTCRATNKWG 285 (805)
Q Consensus 220 ~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~-~~~~~~------~~~----~~~L~i~~~~-~~d~G~Y~C~~~n~~g 285 (805)
.+.|.|.+. .+.|.+.|+|+++|..+.... .+.+.. ..+ .++|.|.+++ .++.|.|+|.|.|...
T Consensus 489 ~~~l~C~~~-~~~P~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~ 565 (581)
T 3o3u_N 489 NKVGTCVSE-GSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLP 565 (581)
T ss_dssp EEEEEEEEE-EEBSCCEEEEEETTEECCTTSTTEEEEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSC
T ss_pred eeEEEEECC-CCCCCCeEEEEECCEECCCCCCeEEEEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCC
Confidence 456799884 236889999999999987543 222211 111 3679999988 5668899999999854
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=9e-15 Score=123.17 Aligned_cols=94 Identities=21% Similarity=0.327 Sum_probs=83.8
Q ss_pred CCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 689 ~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
..||.|...+.+. .+.+|+.+.|.|.+. + |.+.|.|+|+|+.+..+.++.+..++....|.|.+++.+|+|.|+|.
T Consensus 6 ~~pp~~~~~~~~~-~v~~G~~v~l~C~~~--~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (103)
T 2edf_A 6 SGPAAIIKPLEDQ-WVAPGEDVELRCELS--R-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCE 81 (103)
T ss_dssp CCCCCEEECCCCE-EECTTSCEEECCEES--S-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEE
T ss_pred CCCcEEEecCCcc-EEcCCCCEEEEEEEe--C-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEE
Confidence 3688999999888 999999999999998 7 88899999999999999999988888888999999999999999999
Q ss_pred EEcCCccEEEEEEEEEEEeCCC
Q psy2166 769 ATNKWGQAEISVNLECVVWSPS 790 (805)
Q Consensus 769 a~N~~G~~~~~~~l~V~~~~~~ 790 (805)
|.| ...++.|.|...|..
T Consensus 82 a~n----~~~~~~l~V~~~p~~ 99 (103)
T 2edf_A 82 VEA----SKSTASLHVEEKASG 99 (103)
T ss_dssp CSS----CEEEEEEEECCCSSS
T ss_pred Ecc----CCcEEEEEEeCCCCC
Confidence 999 477888888765444
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=122.44 Aligned_cols=92 Identities=21% Similarity=0.202 Sum_probs=80.3
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCC--CeEEEeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH--RIRTVHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
|+.|...+.+. .+.+|+.++|.|.+. + |.+.|+|+|+|+.+..+. ++.+..++....|.|.++..+|+|.|+|.
T Consensus 7 p~~~~~~~~~~-~v~~G~~v~l~C~~~--~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 82 (103)
T 1x44_A 7 GIMVTKQLEDT-TAYCGERVELECEVS--E-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVM 82 (103)
T ss_dssp SCCCSBCCCCE-EEETTEEEEEEEECS--S-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEE
T ss_pred CceeeccCCCE-EEECCCCEEEEEEec--C-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEE
Confidence 44588888888 999999999999997 7 779999999999999888 66888888888999999999999999999
Q ss_pred EEcCCccEEEEEEEEEEEeCCC
Q psy2166 769 ATNKWGQAEISVNLECVVWSPS 790 (805)
Q Consensus 769 a~N~~G~~~~~~~l~V~~~~~~ 790 (805)
|.| .+.++.|.|...|.+
T Consensus 83 a~n----~~~~~~l~V~~~p~p 100 (103)
T 1x44_A 83 TTG----GQSSAKLSVDLKSGP 100 (103)
T ss_dssp ETT----EEEEEEEEEECCCSC
T ss_pred ECC----CcEEEEEEEeCCCCC
Confidence 988 678888888765543
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=7.3e-15 Score=122.75 Aligned_cols=90 Identities=29% Similarity=0.433 Sum_probs=79.5
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
.||.|...+.+. .+.+|+.+.|.|.+. |.|.|.+.|+|+|..+...... ...+...|.|.++..+|+|.|+|.|
T Consensus 10 ~~P~~~~~~~~~-~v~~G~~v~l~C~~~--g~p~p~v~W~~~g~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a 83 (99)
T 2yr3_A 10 VAPSFSSVLKDC-AVIEGQDFVLQCSVR--GTPVPRITWLLNGQPIQYARST---CEAGVAELHIQDALPEDHGTYTCLA 83 (99)
T ss_dssp EEEEEEECCCCE-EECTTCCEEEECEEE--EESCCCCEEEESSSBCSSCCCE---EETTEEEEEECSCCTTCCBCEEEEE
T ss_pred cCCceeecCCCC-EEeCCCeEEEEEEEe--eeCCCeEEEEECCEECcccceE---eeCCeEEEEECCCChhhCEEEEEEE
Confidence 688999888888 999999999999998 9999999999999988766442 3345668999999999999999999
Q ss_pred EcCCccEEEEEEEEEE
Q psy2166 770 TNKWGQAEISVNLECV 785 (805)
Q Consensus 770 ~N~~G~~~~~~~l~V~ 785 (805)
.|..|....++.|.|+
T Consensus 84 ~N~~g~~~~~~~l~V~ 99 (99)
T 2yr3_A 84 ENALGQVSCSAWVTVH 99 (99)
T ss_dssp ECSSCEEEEECCEEEC
T ss_pred EECCCeEEEEEEEEEC
Confidence 9999999998888873
|
| >1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ... | Back alignment and structure |
|---|
Probab=99.55 E-value=8.1e-14 Score=137.73 Aligned_cols=169 Identities=14% Similarity=0.176 Sum_probs=110.3
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEECC--EE---c------------cCCCceEEEEe-CcEEEEEEcccCcCCceEE
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFHNG--KP---I------------FHKNRVKMVSD-FGFVVMDIAYVQSHDSGEY 377 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~g--~~---l------------~~~~~~~~~~~-~~~~~l~i~~v~~~d~G~Y 377 (805)
+.+|+.++|.|.+. .+.+.+.|+|++ .. + ....++.+..+ .....|.|.+++.+|+|.|
T Consensus 11 v~~G~~v~L~C~~~---~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~Y 87 (238)
T 1bec_A 11 AVTGGKVTLSCQQT---NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQTSVY 87 (238)
T ss_dssp EETTCCEEEEEEES---SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGGCEEE
T ss_pred EeCCCcEEEEEEeC---CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcccCEEE
Confidence 78999999999984 357899999853 11 1 01245555432 4567899999999999999
Q ss_pred EEEEEeCce---e-e-EEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCC
Q psy2166 378 VCRAWNKYG---E-D-FTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEG 452 (805)
Q Consensus 378 ~C~a~n~~g---~-~-~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (805)
.|.+.|..+ . . .....|.|....
T Consensus 88 ~C~~~~~~~~~~~~~~~~~~~l~V~~~~---------------------------------------------------- 115 (238)
T 1bec_A 88 FCASGGGRGSYAEQFFGPGTRLTVLEDL---------------------------------------------------- 115 (238)
T ss_dssp EEEEESCTTCGGGCEECCCEEEEEESCG----------------------------------------------------
T ss_pred EEEEecCCCCccccccCCCEEEEEeccC----------------------------------------------------
Confidence 999998642 1 1 122456554210
Q ss_pred ceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCC-cEEE
Q psy2166 453 QSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPD-LVVE 531 (805)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~-~~v~ 531 (805)
....+|.+....+....+.+|+.++|.|.+.+. .|. +.++
T Consensus 116 --------------------------------------~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~-~P~~~~v~ 156 (238)
T 1bec_A 116 --------------------------------------RQVTPPKVSLFEPSKAEIANKQKATLVCLARGF-FPDHVELS 156 (238)
T ss_dssp --------------------------------------GGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEE-BSCCEEEE
T ss_pred --------------------------------------CCCCCCceEEECCChHHcccCCceEEEEEEeeE-eCCCcEEE
Confidence 012466666554443346789999999999952 354 5999
Q ss_pred EEECCEEccCCCceE---EEeeCCE----EEEEEccCCCCC-CEEEEEEEEcCCc
Q psy2166 532 WFYNGKKLPHGHRYR---TFHDFGI----VILDILYCYEEN-SGVYECRATNKYG 578 (805)
Q Consensus 532 W~~~g~~l~~~~~~~---~~~~~~~----~~L~i~~v~~~d-~G~Y~C~a~n~~g 578 (805)
|+|||..+..+.+.. ....++. +.|.|......| .|.|+|.|.|...
T Consensus 157 W~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l 211 (238)
T 1bec_A 157 WWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL 211 (238)
T ss_dssp EEETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred EEECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence 999999987653221 2223332 235555444444 6789999999743
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A | Back alignment and structure |
|---|
Probab=99.55 E-value=2.7e-14 Score=130.17 Aligned_cols=95 Identities=24% Similarity=0.366 Sum_probs=85.7
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEee-CcEEEEEEcCCCCCCCEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA-FGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
.+|.|...+.+. .+.+|+.++|.|.+. |.|.|.|.|+|+|..+....++.+... .+...|.|.+++.+|+|.|+|.
T Consensus 40 ~~P~~~~~~~~~-~v~~G~~v~L~C~~~--g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 116 (154)
T 1fhg_A 40 VKPYFTKTILDM-EVVEGSAARFDCKVE--GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCK 116 (154)
T ss_dssp EEEEEEECCCCE-EEETTSCEEEEEEEE--EESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEE
T ss_pred CCCeEEccCCcE-EEeCCCeEEEEEEEE--EecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEE
Confidence 578899888888 999999999999998 999999999999999998888876543 4567899999999999999999
Q ss_pred EEcCCccEEEEEEEEEEEe
Q psy2166 769 ATNKWGQAEISVNLECVVW 787 (805)
Q Consensus 769 a~N~~G~~~~~~~l~V~~~ 787 (805)
|.|.+|....++.|.|...
T Consensus 117 a~N~~G~~~~~~~l~V~~~ 135 (154)
T 1fhg_A 117 AVNSLGEATCTAELLVETM 135 (154)
T ss_dssp EEETTEEEEEEEEEEEECC
T ss_pred EEECCCeEEEEEEEEEeCc
Confidence 9999999999999999754
|
| >3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-14 Score=118.52 Aligned_cols=95 Identities=26% Similarity=0.470 Sum_probs=84.8
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEE
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECR 572 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 572 (805)
..+|.|...+.... +.+|++++|.|.+. +.|.+.+.|+|+|..+..+.++.+..+++...|.|.+++.+|+|.|+|.
T Consensus 4 ~~~P~i~~~~~~~~-v~~G~~~~l~C~~~--g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 80 (99)
T 3puc_A 4 SSKPVIVTGLQDTT-VSSDSVAKFAVKAT--GEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCT 80 (99)
T ss_dssp CEEEEEEECCCCEE-EESSSCEEEEEEEE--EESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred CCCCEEEecCccEE-EeCCCcEEEEEEEE--ecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEE
Confidence 45778877766654 89999999999999 6788899999999999988899888888888999999999999999999
Q ss_pred EEcCCcceEEEEEEEEee
Q psy2166 573 ATNKYGSDVTKASLKCVS 590 (805)
Q Consensus 573 a~n~~g~~~~~~~l~V~~ 590 (805)
|.|..|.....+.|.|..
T Consensus 81 a~n~~g~~~~~~~l~V~~ 98 (99)
T 3puc_A 81 VKNSAGSVSSSCKLTIKA 98 (99)
T ss_dssp EEETTEEEEEEEEEEEEC
T ss_pred EEeCCCcEeEEEEEEEEe
Confidence 999999999999998864
|
| >1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.54 E-value=4.3e-14 Score=118.07 Aligned_cols=95 Identities=29% Similarity=0.416 Sum_probs=82.0
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEE-eeCCEEEEEEccCCCCCCEEEEE
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTF-HDFGIVILDILYCYEENSGVYEC 571 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C 571 (805)
..+|.|...+.+.. +.+|+.++|.|.+. |.|.+.+.|+|+|..+..+.++.+. ..++...|.|.+++.+|+|.|+|
T Consensus 3 ~~~P~~~~~~~~~~-v~~G~~v~l~C~~~--g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 79 (99)
T 1g1c_A 3 MEAPKIFERIQSQT-VGQGSDAHFRVRVV--GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMV 79 (99)
T ss_dssp CEEEEEEECCCCEE-EETTSCEEEEEEEE--EESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred CCCCceEecCcceE-EcCCCcEEEEEEEE--EeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEE
Confidence 35688877766655 89999999999999 6788899999999999877776653 45677789999999999999999
Q ss_pred EEEcCCcceEEEEEEEEee
Q psy2166 572 RATNKYGSDVTKASLKCVS 590 (805)
Q Consensus 572 ~a~n~~g~~~~~~~l~V~~ 590 (805)
.|.|..|.....+.|.|..
T Consensus 80 ~a~N~~g~~~~~~~l~V~~ 98 (99)
T 1g1c_A 80 KAINIAGETSSHAFLLVQA 98 (99)
T ss_dssp EEEETTEEEEEEEEEEEEC
T ss_pred EEEECCCcEEEEEEEEEec
Confidence 9999999999999998865
|
| >1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A | Back alignment and structure |
|---|
Probab=99.54 E-value=7.5e-14 Score=114.20 Aligned_cols=89 Identities=18% Similarity=0.190 Sum_probs=75.7
Q ss_pred CCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEE
Q psy2166 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRA 143 (805)
Q Consensus 64 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 143 (805)
.+|.|+..+. ++.+.+|+.++|.|.+. + +.+.|+|+|||..+..+.++.+..++..++|.|.+++.+|+|.|+|.|
T Consensus 4 ~~~~~~~~~~-~~~v~~G~~v~l~C~v~--~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a 79 (93)
T 1waa_A 4 ALIEVEKPLY-GVEVFVGETAHFEIELS--E-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQA 79 (93)
T ss_dssp CCCCEEECCC-CEEEETTSCEEEEEEES--S-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred CCcEeeccCc-ceEEeCCCCEEEEEEEC--C-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEE
Confidence 4566766665 78999999999999997 3 447899999999999999999998888889999999999999999999
Q ss_pred EeCCeeEEEEEEEEEec
Q psy2166 144 WNLAGETFTSTTIYCST 160 (805)
Q Consensus 144 ~n~~g~~~~~~~l~V~~ 160 (805)
.|. ..++.|.|..
T Consensus 80 ~n~----~~sa~L~V~~ 92 (93)
T 1waa_A 80 ANT----KSAANLKVKE 92 (93)
T ss_dssp TTE----EEEEEEEEEC
T ss_pred CCC----cEEEEEEEEc
Confidence 763 4667777753
|
| >3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.5e-14 Score=141.94 Aligned_cols=182 Identities=13% Similarity=0.140 Sum_probs=113.0
Q ss_pred CCceecCCCcEEEEEEEecCCCCCceEEEEEC--CE---ec--------------CCCCceEEEec--CcEEEEEEcccc
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GK---PL--------------ELGSRFKTTAD--FGFVTLDLTEVY 132 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~---~i--------------~~~~~~~~~~~--~~~~~L~I~~~~ 132 (805)
..+.+.+|++|+|.|.+.+...+...+.|+|. +. .+ ...+|+.+..+ .+.++|+|.+++
T Consensus 7 ~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 86 (248)
T 3u2s_H 7 GGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSLR 86 (248)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred CCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCC
Confidence 36789999999999999742234568999983 21 11 11357777654 467789999999
Q ss_pred cCCCeEEEEEEEeCC----------------------eeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCC
Q psy2166 133 DRDQGIYTCRAWNLA----------------------GETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQ 190 (805)
Q Consensus 133 ~~D~G~Y~C~a~n~~----------------------g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 190 (805)
.+|+|.|.|.+.+.. ......+.|.|....
T Consensus 87 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~---------------------------- 138 (248)
T 3u2s_H 87 VEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSAS---------------------------- 138 (248)
T ss_dssp GGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCC----------------------------
T ss_pred HHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccC----------------------------
Confidence 999999999998741 111123445554211
Q ss_pred CCCCCCCCCCCCCceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEEEEEcC----eEEEEEc
Q psy2166 191 PAGVPDSEDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG----MVVLEIL 266 (805)
Q Consensus 191 ~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~~~~~~----~~~L~i~ 266 (805)
..+|.+....+.. .+..|+.++|.|.+....++.+.+.|+++|..+...........++ .+.|.|.
T Consensus 139 ---------~~~P~v~~~~~~~-~~~~g~~~~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~ 208 (248)
T 3u2s_H 139 ---------TKGPSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVP 208 (248)
T ss_dssp ---------CBCCEEEEECCC-------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEE
T ss_pred ---------CCCCEEEEeCCCc-cccCCCcEEEEEEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEC
Confidence 1335444332222 2457999999999864332257899999986432111000111111 2468888
Q ss_pred CCCCcccEEEEEEEEcCCeeEEEEEEEE
Q psy2166 267 GTKIEDTGVYTCRATNKWGQAEISVNLE 294 (805)
Q Consensus 267 ~~~~~d~G~Y~C~~~n~~g~~~~~~~l~ 294 (805)
....+| |.|+|.|.|..+.......+.
T Consensus 209 ~~~~~~-~~ytC~v~h~~~~~~~~~~l~ 235 (248)
T 3u2s_H 209 SSSLGT-QTYICNVNHKPSNTKVDKKVE 235 (248)
T ss_dssp GGGBTT-BCCEEEEEEGGGTEEEEEECC
T ss_pred hhhcCC-CeEEEEEEECCCCcceEEEEc
Confidence 888888 999999999877666555544
|
| >1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ... | Back alignment and structure |
|---|
Probab=99.54 E-value=6e-14 Score=140.00 Aligned_cols=176 Identities=11% Similarity=0.081 Sum_probs=113.5
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEECC--E--e-c------------CCCCceEEEec-CcEEEEEEccccc
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG--K--P-L------------ELGSRFKTTAD-FGFVTLDLTEVYD 133 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g--~--~-i------------~~~~~~~~~~~-~~~~~L~I~~~~~ 133 (805)
.+..+.+.+|+.++|.|.+. .+.+.|.|+|+. . . + ....|+.+..+ .+..+|.|.+++.
T Consensus 9 ~p~~v~v~~G~~v~L~C~~~---~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~ 85 (252)
T 1oga_E 9 SPKYLFRKEGQNVTLSCEQN---LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQK 85 (252)
T ss_dssp SCSEEEEETTCCEEECCEEC---SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCS
T ss_pred cCCeEEEcCCCcEEEEEEeC---CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCCh
Confidence 44467899999999999986 357899999852 1 1 1 12357776542 3456899999999
Q ss_pred CCCeEEEEEEEeCC---eeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccc
Q psy2166 134 RDQGIYTCRAWNLA---GETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQ 210 (805)
Q Consensus 134 ~D~G~Y~C~a~n~~---g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 210 (805)
+|+|.|.|.+.+.. ........|.|..... ...+|.+....+
T Consensus 86 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~-----------------------------------~~~~P~v~~~~~ 130 (252)
T 1oga_E 86 NPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLK-----------------------------------NVFPPEVAVFEP 130 (252)
T ss_dssp CCCEEEEEEEESSTTSCCEECCCEEEEEESCGG-----------------------------------GCBCCEEEEECC
T ss_pred hhCEEEEEEEecCCccceeECCCEEEEEecccC-----------------------------------CCCCCeEEEECC
Confidence 99999999999851 1112234566653210 013455554322
Q ss_pred cccccCCCceEEEEEEEeeCCCCC-eEEEEEECCEEccCCCcEE---E--E--EEcC----eEEEEEcCCCCc-ccEEEE
Q psy2166 211 HLSNLSEGEIAHFEASLIPVGDQT-MTVEFLYNGKPIEASHRIR---T--V--HAFG----MVVLEILGTKIE-DTGVYT 277 (805)
Q Consensus 211 ~~~~v~~g~~~~l~C~~~~~~~p~-~~i~W~k~g~~l~~~~~~~---~--~--~~~~----~~~L~i~~~~~~-d~G~Y~ 277 (805)
....+.+|+.++|.|.+.. ..|. +.+.|+|+|..+....... . . ..++ .+.|.|...... |.|.|+
T Consensus 131 ~~~~~~~g~~~~L~C~~~g-~~P~~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~yt 209 (252)
T 1oga_E 131 SEAEISHTQKATLVCLATG-FYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFR 209 (252)
T ss_dssp CHHHHHHHSEEEEEEEEEE-EBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEE
T ss_pred ChhhhccCCceEEEEEEee-EcCCCcEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEE
Confidence 2223557999999999842 2354 6999999999886542211 0 0 0122 245777765553 678999
Q ss_pred EEEEcCCee
Q psy2166 278 CRATNKWGQ 286 (805)
Q Consensus 278 C~~~n~~g~ 286 (805)
|.+.|....
T Consensus 210 C~v~~~~l~ 218 (252)
T 1oga_E 210 CQVQFYGLS 218 (252)
T ss_dssp EEEEECCBC
T ss_pred EEEEcCCCC
Confidence 999997544
|
| >3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ... | Back alignment and structure |
|---|
Probab=99.53 E-value=7.5e-14 Score=137.91 Aligned_cols=177 Identities=11% Similarity=0.156 Sum_probs=113.8
Q ss_pred ccCCCeEEEEEEEeecCCC----CcEEEEEECC--E---Ec---c----------------CCCceEEEEe--CcEEEEE
Q psy2166 316 LKDGDSAHFECTLTPVNDP----ELKVEWFHNG--K---PI---F----------------HKNRVKMVSD--FGFVVMD 365 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p----~~~v~W~~~g--~---~l---~----------------~~~~~~~~~~--~~~~~l~ 365 (805)
+.+|+.++|.|.+. +.+ ...+.|++.. . .+ . ...++.+..+ .....|.
T Consensus 12 v~~G~~v~L~C~~~--~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 89 (239)
T 3tv3_H 12 VEASETLSLTCAVS--GDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFLK 89 (239)
T ss_dssp ECTTSCEEEEEEEE--SSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEEEE
T ss_pred EcCCCCEEEEEEEc--CCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEEEE
Confidence 88999999999997 443 4589999832 1 11 0 1245665544 4567899
Q ss_pred EcccCcCCceEEEEEEEeCce-----------e--eEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCc
Q psy2166 366 IAYVQSHDSGEYVCRAWNKYG-----------E--DFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAP 432 (805)
Q Consensus 366 i~~v~~~d~G~Y~C~a~n~~g-----------~--~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 432 (805)
|.+++.+|+|.|.|.+.+..+ . ......|.|..
T Consensus 90 I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~---------------------------------- 135 (239)
T 3tv3_H 90 LNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSS---------------------------------- 135 (239)
T ss_dssp ECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECC----------------------------------
T ss_pred ECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeecc----------------------------------
Confidence 999999999999999986531 0 01112343321
Q ss_pred ccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCC
Q psy2166 433 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQ 512 (805)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~ 512 (805)
....+|.+....+... +..|+
T Consensus 136 ----------------------------------------------------------~~~~~P~v~~~~~~~~-~~~g~ 156 (239)
T 3tv3_H 136 ----------------------------------------------------------ASTKGPSVFPLAPSSK-STSGG 156 (239)
T ss_dssp ----------------------------------------------------------CCCBCCEEEEECCCCC-C--TT
T ss_pred ----------------------------------------------------------CCCcCCEEEEECCChh-hccCC
Confidence 1134566664444333 56799
Q ss_pred eEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEe-eCC---EEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 513 SAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFH-DFG---IVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 513 ~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~-~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
.++|.|.+.+..+++..++|+++|..+.......... ++. .+.|.|.....+| |.|+|.|.|..+.......|.+
T Consensus 157 ~v~l~C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~ 235 (239)
T 3tv3_H 157 TAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP 235 (239)
T ss_dssp EEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred cEEEEEEEeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEecc
Confidence 9999999996433355799999987542110000111 111 2358899888888 9999999999887776666554
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.5e-15 Score=122.80 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=82.6
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCC-eEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQT-MTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~-~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
.||.|...+.+. .+.+|+.++|.|.+. +.|. +.+.|+|||+.+..+.++.+..++....|.|.++..+|+|.|+|.
T Consensus 7 ~p~~~~~~~~~~-~v~~G~~v~l~C~v~--~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 83 (104)
T 2eny_A 7 GHVGITKRLKTM-EVLEGESCSFECVLS--HESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFS 83 (104)
T ss_dssp CCCCCSBCCCCE-EEESSCCEEEEEECS--SCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEE
T ss_pred CCCEEEecCCCc-EEcCCCcEEEEEEEc--CCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEE
Confidence 577888888888 999999999999998 7775 489999999999999999988888888999999999999999999
Q ss_pred EEcCCccEEEEEEEEEEEeCC
Q psy2166 769 ATNKWGQAEISVNLECVVWSP 789 (805)
Q Consensus 769 a~N~~G~~~~~~~l~V~~~~~ 789 (805)
|. +...+++|+|...|.
T Consensus 84 a~----~~~~~a~L~V~~~p~ 100 (104)
T 2eny_A 84 VR----GLTSKASLIVRERSG 100 (104)
T ss_dssp ET----TEEEEECEEEECCCS
T ss_pred EC----CeeEEEEEEEeCCCc
Confidence 84 477899999987554
|
| >2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-14 Score=116.78 Aligned_cols=86 Identities=19% Similarity=0.244 Sum_probs=71.0
Q ss_pred CeEEecCCCCc--eecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEE
Q psy2166 66 PVFIVPLKPEF--KLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRA 143 (805)
Q Consensus 66 p~~~~~~~~~~--~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 143 (805)
|.+++.+..+. .+.+|+.++|.|.+. .|.+.|+|+|||..|..+.++.+..+++.++|.|.+++.+|+|.|+|.|
T Consensus 4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~---~p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a 80 (91)
T 2lvc_A 4 PVHIVDPREHVFVHAITSECVMLACEVD---REDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVA 80 (91)
T ss_dssp CCCCCBCCSCEEEECCTTCCEEEEEECS---CTTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEEC
T ss_pred CcEEeccCCCeEEEEECCCcEEEEEEEC---CCCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEE
Confidence 55555555454 456899999999986 4778899999999999999999999999999999999999999999999
Q ss_pred EeCCeeEEEEEEEEE
Q psy2166 144 WNLAGETFTSTTIYC 158 (805)
Q Consensus 144 ~n~~g~~~~~~~l~V 158 (805)
.| ...+++|+|
T Consensus 81 ~n----~~~~~~ltV 91 (91)
T 2lvc_A 81 GD----ECAYFTVTI 91 (91)
T ss_dssp SS----CEEEEEEEC
T ss_pred cc----eEEEEEEEC
Confidence 54 455566654
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-14 Score=121.34 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=79.9
Q ss_pred CCCeeeecCCc---ccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEE
Q psy2166 690 RPPQFTSEFQH---LSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYT 766 (805)
Q Consensus 690 ~~P~~~~~~~~---~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 766 (805)
.+|.+...+.+ . .+.+|+.++|.|.+. |.|.+ |.|+|+|+.+..+.++.+..++....|.|.+++.+|+|.|+
T Consensus 6 ~~P~~~~~p~~~~~~-~v~~G~~v~l~C~~~--~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 81 (104)
T 2e6p_A 6 SGPVHILSPQDKVSL-TFTTSERVVLTCELS--RVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFE 81 (104)
T ss_dssp SSSCCCCBCCSCEEE-EEESSSCEECCEECS--STTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEE
T ss_pred CCCCEEECCCCCccE-EEeCCCcEEEEEEec--CCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEE
Confidence 56777777776 6 899999999999998 88988 99999999999999998888888889999999999999999
Q ss_pred EEEEcCCccEEEEEEEEEEEeCC
Q psy2166 767 CRATNKWGQAEISVNLECVVWSP 789 (805)
Q Consensus 767 C~a~N~~G~~~~~~~l~V~~~~~ 789 (805)
|.|.|..| .+.|.|.+.|.
T Consensus 82 C~a~n~~~----~~~l~V~~~P~ 100 (104)
T 2e6p_A 82 CRTEGVSA----FFGVTVQDPSG 100 (104)
T ss_dssp EECSSCCC----CEEEEEECCCC
T ss_pred EEECCceE----EEEEEEcCCCC
Confidence 99999754 67777765443
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X | Back alignment and structure |
|---|
Probab=99.53 E-value=4.1e-14 Score=118.71 Aligned_cols=92 Identities=20% Similarity=0.243 Sum_probs=73.1
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEE--EeeC---cEEEEEEcCCCCCCCEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT--VHAF---GMVVLEILGTKIEDTGV 764 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~--~~~~---~~~~L~i~~v~~~d~G~ 764 (805)
.||+|.... ....|+.+.|.|.+. |+|.|.|+|+|||+.+..+.++.+ ...+ ....|.|.++..+|+|.
T Consensus 3 ~pP~i~~~~----~~~~~~~~~~~c~v~--G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 76 (103)
T 1wwb_X 3 FAPTITFLE----SPTSDHHWCIPFTVK--GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGD 76 (103)
T ss_dssp CCCCCCCCC----CCCCCCEEEEEEEEE--CSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred CCCEEEecc----CceECcEEEEEEEEE--EeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEE
Confidence 456654221 235688999999999 999999999999999988876432 2111 13459999999999999
Q ss_pred EEEEEEcCCccEEEEEEEEEEEe
Q psy2166 765 YTCRATNKWGQAEISVNLECVVW 787 (805)
Q Consensus 765 Y~C~a~N~~G~~~~~~~l~V~~~ 787 (805)
|+|.|.|.+|.++.++.|.|...
T Consensus 77 Y~C~A~N~~G~~~~~~~l~V~~~ 99 (103)
T 1wwb_X 77 YTLIAKNEYGKDEKQISAHFMGW 99 (103)
T ss_dssp EEEEEECSSCEEEEEEEECCSCC
T ss_pred EEEEEEeCCCcEeEEEEEEECCC
Confidence 99999999999999999998643
|
| >2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3e-14 Score=118.56 Aligned_cols=92 Identities=15% Similarity=0.263 Sum_probs=78.7
Q ss_pred CCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEE
Q psy2166 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRA 143 (805)
Q Consensus 64 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 143 (805)
.+|.|...+. ++.+.+|+.++|.|.+ .|.+.|+|+|||..+..+.++.+..++..++|.|.+++.+|+|.|+|.|
T Consensus 6 ~p~~~~~~~~-~~~v~~G~~v~l~C~v----~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a 80 (100)
T 2yuz_A 6 SGLKILTPLT-DQTVNLGKEICLKCEI----SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAP 80 (100)
T ss_dssp CCCCCSBCCC-CEEEETTSCCCEEEEC----SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEE
T ss_pred CCCEEeccCC-ceEEcCCCCEEEEEEe----CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEE
Confidence 3456655544 7899999999999998 4567899999999999999999999888889999999999999999999
Q ss_pred EeCCeeEEEEEEEEEeccc
Q psy2166 144 WNLAGETFTSTTIYCSTKE 162 (805)
Q Consensus 144 ~n~~g~~~~~~~l~V~~~~ 162 (805)
.|. .....+.|.|..+|
T Consensus 81 ~N~--~~~~~a~L~V~~~P 97 (100)
T 2yuz_A 81 DAY--NVTLPAKVHVISGP 97 (100)
T ss_dssp SSS--CCCEEEEEEEECCS
T ss_pred cCC--CeeEEEEEEEeCCC
Confidence 997 45667788887654
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A | Back alignment and structure |
|---|
Probab=99.53 E-value=6.6e-14 Score=118.85 Aligned_cols=93 Identities=17% Similarity=0.171 Sum_probs=75.4
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCC---eEEEEEECCE-Ecc--CCCCeEEEe--e----CcEEEEEEcCC
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQT---MTVEFLYNGK-PIE--ASHRIRTVH--A----FGMVVLEILGT 757 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~---~~v~W~~~g~-~l~--~~~~~~~~~--~----~~~~~L~i~~v 757 (805)
..|.|...|.+. .+.+|+.++|.|.+. |.|. |.|+|+|++. .+. ...++.+.. . .+...|.|.++
T Consensus 3 p~p~f~~~p~~~-~v~~G~~v~L~C~~~--g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v 79 (108)
T 3cx2_A 3 PIGLFVMRPQDG-EVTVGGSITFSARVA--GASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDA 79 (108)
T ss_dssp CCCSCSBCCCCE-EEETTCCEEEEEEEE--CC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSC
T ss_pred CccEEEeCCCcE-EEeCCCCEEEEEEEC--CCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecC
Confidence 468888888888 999999999999999 9998 9999999883 222 123444321 1 12468999999
Q ss_pred CCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 758 KIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 758 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
+.+|+|.|+|.|.|.+|..+.++.|+|.
T Consensus 80 ~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 80 QPAFTGSYRCEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred CCccCEEEEEEEecCCCceEEEEEEEEe
Confidence 9999999999999999999999999985
|
| >1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=6e-15 Score=143.16 Aligned_cols=179 Identities=10% Similarity=0.026 Sum_probs=110.5
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCC--CceEEEEECCEecCCCCce-EE-EecC---cEEEEEEcccccCCCe
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDP--NLKIEWIFNGKPLELGSRF-KT-TADF---GFVTLDLTEVYDRDQG 137 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p--~~~v~W~k~g~~i~~~~~~-~~-~~~~---~~~~L~I~~~~~~D~G 137 (805)
+|.+....+....+.+|+.++|.|.+.+. .| .+.|.| ++..+...... .. ..++ ...+|.|.+++.+|+|
T Consensus 3 ~p~v~~~~P~~~~v~~G~~v~L~C~~~g~-~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g 79 (214)
T 1ow0_A 3 HPRLSLHRPALEDLLLGSEANLTCTLTGL-RDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGK 79 (214)
T ss_dssp CCCCEEECCCHHHHHHCSSCCCEEEETTC-CSCCCCCCCB--SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTC
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEeee-ECCCCeEEEE--cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCC
Confidence 35555555556788999999999999842 23 268999 44443211000 00 0011 3457999999999999
Q ss_pred EEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCC
Q psy2166 138 IYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 217 (805)
Q Consensus 138 ~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~ 217 (805)
.|+|.+.|..+.......+.+. ....+|.+.........+.+
T Consensus 80 ~Y~C~~~~~~~~~~~~~~i~~~--------------------------------------~~~~~P~v~~~~~~~~~~~~ 121 (214)
T 1ow0_A 80 TFTCTAAYPESKTPLTATLSKS--------------------------------------GNTFRPEVHLLPPPSEELAL 121 (214)
T ss_dssp EEEEEECCSSCSSCEEEEEECC--------------------------------------SSCCCCEEEEECCCTTTTTS
T ss_pred eEEEEEecCCCCCceeEeeccC--------------------------------------CCCCCCEEEecCCCHHHhcc
Confidence 9999999876543222233210 00145655443333334678
Q ss_pred CceEEEEEEEeeCCCC-CeEEEEEECCEEccCCCcEE---EEE---EcCe----EEEEEcCCCCcccEEEEEEEEcCCe
Q psy2166 218 GEIAHFEASLIPVGDQ-TMTVEFLYNGKPIEASHRIR---TVH---AFGM----VVLEILGTKIEDTGVYTCRATNKWG 285 (805)
Q Consensus 218 g~~~~l~C~~~~~~~p-~~~i~W~k~g~~l~~~~~~~---~~~---~~~~----~~L~i~~~~~~d~G~Y~C~~~n~~g 285 (805)
|+.++|.|.+.. .+| .+.|.|+|||..+....... ... .++. +.|.|.....+|.|.|+|.|.|...
T Consensus 122 g~~~~L~C~~~g-~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l 199 (214)
T 1ow0_A 122 NELVTLTCLARG-FSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEAL 199 (214)
T ss_dssp SSEEEEEEEEEE-ESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred CCceEEEEEEee-eECCCcEEEEEECCEECCCCceeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCC
Confidence 999999999853 234 46999999999886542111 122 2332 3455554444568999999999754
|
| >3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ... | Back alignment and structure |
|---|
Probab=99.52 E-value=8.2e-14 Score=136.82 Aligned_cols=182 Identities=14% Similarity=0.177 Sum_probs=117.1
Q ss_pred CCceecCCCcEEEEEEEecCCCCCceEEEEEC--CE---ec--------------CCCCceEEEecC--cEEEEEEcccc
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GK---PL--------------ELGSRFKTTADF--GFVTLDLTEVY 132 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~---~i--------------~~~~~~~~~~~~--~~~~L~I~~~~ 132 (805)
+.+.+.+|++|+|.|.+.+.......+.|||. +. .+ ...+|+.+..+. +.++|.|.+++
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 87 (230)
T 3n9g_H 8 GAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLR 87 (230)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCC
Confidence 35789999999999999742234568999973 21 11 013577776543 57789999999
Q ss_pred cCCCeEEEEEEEeCC-----e-e--EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCc
Q psy2166 133 DRDQGIYTCRAWNLA-----G-E--TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQ 204 (805)
Q Consensus 133 ~~D~G~Y~C~a~n~~-----g-~--~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 204 (805)
.+|+|.|.|.+.+.. + . ....+.|.|.... ..+|.
T Consensus 88 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~-------------------------------------~~~P~ 130 (230)
T 3n9g_H 88 SEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSAS-------------------------------------TKGPS 130 (230)
T ss_dssp GGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSC-------------------------------------CBCCE
T ss_pred hhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecC-------------------------------------CCCCE
Confidence 999999999998753 1 1 1123456664311 13344
Q ss_pred eecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEE--EEEEcC----eEEEEEcCCCCcccEEEEE
Q psy2166 205 FTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR--TVHAFG----MVVLEILGTKIEDTGVYTC 278 (805)
Q Consensus 205 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~--~~~~~~----~~~L~i~~~~~~d~G~Y~C 278 (805)
+....... .+.+|+.++|.|.+.....+.+.+.| +|..+....... ....++ .+.|.|.....+| |.|+|
T Consensus 131 v~~~~~~~-~~~~g~~v~L~C~~~~~~P~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC 206 (230)
T 3n9g_H 131 VFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYIC 206 (230)
T ss_dssp EEEECCCC-CCCTTCEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEE
T ss_pred EEecCCCc-cccCCCCEEEEEEEEeEECCCEEEEE--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEE
Confidence 44322222 25689999999998642322578999 665543211100 011111 2479999999999 99999
Q ss_pred EEEcCCeeEEEEEEEEEe
Q psy2166 279 RATNKWGQAEISVNLECV 296 (805)
Q Consensus 279 ~~~n~~g~~~~~~~l~v~ 296 (805)
.|.|..+.......+.+.
T Consensus 207 ~v~h~~~~~~~~~~~~v~ 224 (230)
T 3n9g_H 207 NVNHKPSNTKVDKRVEPK 224 (230)
T ss_dssp EEEEGGGTEEEEEECCCC
T ss_pred EEEECCCCcceEEEccCC
Confidence 999988776666665543
|
| >2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.1e-15 Score=133.33 Aligned_cols=97 Identities=20% Similarity=0.237 Sum_probs=81.9
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeE-EEEEECCEEccC--CCCeEEE--eeCc--EEEEEEcCCCCCCC
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMT-VEFLYNGKPIEA--SHRIRTV--HAFG--MVVLEILGTKIEDT 762 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~-v~W~~~g~~l~~--~~~~~~~--~~~~--~~~L~i~~v~~~d~ 762 (805)
.||.|.. +... .+.+|+.+.|.|.+. |.|.|. |.|+++|+.+.. ..++.+. ...+ ...|.|.++..+|+
T Consensus 13 ~~P~i~~-~~~~-~~~~G~~v~l~C~~~--g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 88 (122)
T 2cry_A 13 GPPIISS-TQTQ-HALHGEKGQIKCFIR--STPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADF 88 (122)
T ss_dssp SSCCEEE-ECCC-CCCTTSCCCCCEEEC--CSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHH
T ss_pred cCCCccC-CCeE-EEecCCCEEEEEEEe--ecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCChhhC
Confidence 6788888 7777 999999999999999 999987 999999998875 4666652 2233 56899999999999
Q ss_pred -EEEEEEEEcCCccEEEEEEEEEEEeCCC
Q psy2166 763 -GVYTCRATNKWGQAEISVNLECVVWSPS 790 (805)
Q Consensus 763 -G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 790 (805)
|.|+|.|.|.+|.+...+.|.|...++.
T Consensus 89 ~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 117 (122)
T 2cry_A 89 QTIYNCTAWNSFGSDTEIIRLKEQGSEMS 117 (122)
T ss_dssp HSCEEEEEECSSCEEEEEECCCCSCSSCC
T ss_pred CceEEEEEECCCCeEEEEEEEEECCCCCC
Confidence 9999999999999999999998764443
|
| >1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.9e-14 Score=139.98 Aligned_cols=180 Identities=11% Similarity=0.105 Sum_probs=111.4
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEe---c------------C-CCCceEEEecC--cEEEEEEccc
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKP---L------------E-LGSRFKTTADF--GFVTLDLTEV 131 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~---i------------~-~~~~~~~~~~~--~~~~L~I~~~ 131 (805)
.+..+.+.+|+.++|.|.+.+...+.+.+.|+|. +.. + . ...|+.+..+. +.++|.|.++
T Consensus 7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 86 (230)
T 1ypz_F 7 PEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSL 86 (230)
T ss_dssp SCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSC
T ss_pred cCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcC
Confidence 3446789999999999999832115678999984 221 1 0 24577776543 6779999999
Q ss_pred ccCCCeEEEEEEEeC--Ce--eEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceec
Q psy2166 132 YDRDQGIYTCRAWNL--AG--ETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTS 207 (805)
Q Consensus 132 ~~~D~G~Y~C~a~n~--~g--~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 207 (805)
+.+|+|.|.|.+.+. .. .....+.|.|..+..... ...+|....
T Consensus 87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~--------------------------------~~~~p~~~v 134 (230)
T 1ypz_F 87 EEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLD--------------------------------ADISPKPTI 134 (230)
T ss_dssp CGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCC--------------------------------SCCSCCCCE
T ss_pred ChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCc--------------------------------ccCCCCceE
Confidence 999999999999874 11 111234677652110000 001111111
Q ss_pred ccccccccCCCceEEEEEEEeeCCCCC-eEEEEEE-CCEEccCCCcEEEEEEcC----eEEEEEcCCCCcccEEEEEEEE
Q psy2166 208 EFQHLSNLSEGEIAHFEASLIPVGDQT-MTVEFLY-NGKPIEASHRIRTVHAFG----MVVLEILGTKIEDTGVYTCRAT 281 (805)
Q Consensus 208 ~~~~~~~v~~g~~~~l~C~~~~~~~p~-~~i~W~k-~g~~l~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~ 281 (805)
..+....+.+|+.++|.|.+.. ..|. +.|.|++ +|..+...........++ .+.|.|..... + |.|+|.|.
T Consensus 135 ~~p~~~~v~~g~~~~L~C~~~g-~~P~~~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~ 211 (230)
T 1ypz_F 135 FLPSVAETNLHKTGTYLCLLEA-FFPDVIRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVK 211 (230)
T ss_dssp ECCCHHHHHHHSCEEEEEEEEE-ESSCCCEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEE
T ss_pred ECCCchhhccCCcceEEEEEee-ecCCCeEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEE
Confidence 1111123557889999999852 3354 6999999 887775332111112222 24688887765 4 99999999
Q ss_pred cCCee
Q psy2166 282 NKWGQ 286 (805)
Q Consensus 282 n~~g~ 286 (805)
|..+.
T Consensus 212 ~~~~~ 216 (230)
T 1ypz_F 212 HENNK 216 (230)
T ss_dssp CSSCT
T ss_pred ECCCC
Confidence 97654
|
| >2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.8e-14 Score=120.33 Aligned_cols=99 Identities=19% Similarity=0.217 Sum_probs=83.7
Q ss_pred CCCCCCceEec--CCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEE
Q psy2166 491 PVAEAPKFITQ--ISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 568 (805)
Q Consensus 491 ~~~~~P~~~~~--~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 568 (805)
.+..+|.|... ......+.+|+.++|.|.+. |.|.|.++|+|+|..+. ..++.+...++...|.|.++..+|+|.
T Consensus 17 ~v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~--g~P~p~i~W~k~g~~l~-~~~~~~~~~~~~~~L~i~~~~~~D~G~ 93 (118)
T 2e7c_A 17 EIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQ--GKPRPQVVWTKGGAPLD-TSRVHVRTSDFDTVFFVRQAARSDSGE 93 (118)
T ss_dssp CCSEEEEECCCTTTSSCEEEESSSCEEEEEEEE--EESCCEEEEEETTEECC-CSSCEEEECSSEEEEEESSCCTTTCEE
T ss_pred eeccCCeEecCcccCCCEEEECCCEEEEEEEEc--cCCCCEEEEEECCEECC-CCcEEEEECCCeEEEEECCCChhcCEE
Confidence 44567888654 34455589999999999999 67888999999999997 456666667777889999999999999
Q ss_pred EEEEEEcCCcceEEEEEEEEeeee
Q psy2166 569 YECRATNKYGSDVTKASLKCVSKT 592 (805)
Q Consensus 569 Y~C~a~n~~g~~~~~~~l~V~~~~ 592 (805)
|+|.|.|..|.....+.|.|...|
T Consensus 94 Y~C~a~N~~G~~~~~~~l~V~~~P 117 (118)
T 2e7c_A 94 YELSVQIENMKDTATIRIRVVEKA 117 (118)
T ss_dssp EEEEEECSSCEECCEEEEEEECCC
T ss_pred EEEEEEeCCCeEEEEEEEEEEcCC
Confidence 999999999999999999998754
|
| >2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-14 Score=114.29 Aligned_cols=79 Identities=16% Similarity=0.213 Sum_probs=70.0
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTST 154 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~ 154 (805)
++.+.+|+.++|.|.+. .|.+.|+|+|||.+|..+.++.+..+++.++|.|.+++.+|+|.|+|.|.| ....+
T Consensus 5 ~v~~~~G~~v~l~C~vs---~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~a 77 (84)
T 2lu7_A 5 RVRSTPGGDLELVVHLS---GPGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----DSRIF 77 (84)
T ss_dssp CEEECTTSCEEEECCCS---CCSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT----TCEEE
T ss_pred EEEEecCCCEEEEEEEC---CCCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECC----EEEEE
Confidence 67899999999999986 477889999999999999999999998888999999999999999999844 45667
Q ss_pred EEEEec
Q psy2166 155 TIYCST 160 (805)
Q Consensus 155 ~l~V~~ 160 (805)
.|+|..
T Consensus 78 ~l~V~e 83 (84)
T 2lu7_A 78 LVSVEE 83 (84)
T ss_dssp EEEECC
T ss_pred EEEEEC
Confidence 787754
|
| >2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-14 Score=121.83 Aligned_cols=91 Identities=21% Similarity=0.269 Sum_probs=82.4
Q ss_pred CCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 689 ~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
..+|.|...+.+. .+.+|+++.|.|.+. +.|.+ |.|+|+|+.+..+.++.+..++....|.|.++..+|+|.|+|.
T Consensus 6 ~~~p~~~~~~~~~-~v~~G~~v~l~C~~~--~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (106)
T 2dlt_A 6 SGQLEVLQDIADL-TVKAAEQAVFKCEVS--DEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFV 81 (106)
T ss_dssp CCCCCEEECCCCE-EEESSCCEECCCEES--CSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEE
T ss_pred CCCCEEecCCCCe-EEeCCCeEEEEEEEc--CCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEE
Confidence 3689999999998 999999999999998 88888 9999999999999999988888888999999999999999999
Q ss_pred EEcCCccEEEEEEEEEE
Q psy2166 769 ATNKWGQAEISVNLECV 785 (805)
Q Consensus 769 a~N~~G~~~~~~~l~V~ 785 (805)
|.|. ....++.|.|.
T Consensus 82 a~n~--~~~~~~~l~V~ 96 (106)
T 2dlt_A 82 PDGY--ALSLSAKLNFL 96 (106)
T ss_dssp EETS--CCCCCBCEEEE
T ss_pred EccC--CceEEEEEEEE
Confidence 9998 55567777776
|
| >3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ... | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=135.31 Aligned_cols=179 Identities=11% Similarity=0.145 Sum_probs=111.0
Q ss_pred ccCCCeEEEEEEEeecCC--CCcEEEEEECC-----EEc-----c-----------CCCceEEEEe--CcEEEEEEcccC
Q psy2166 316 LKDGDSAHFECTLTPVND--PELKVEWFHNG-----KPI-----F-----------HKNRVKMVSD--FGFVVMDIAYVQ 370 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~--p~~~v~W~~~g-----~~l-----~-----------~~~~~~~~~~--~~~~~l~i~~v~ 370 (805)
+.+|++++|.|.+.+... +...|.|++.. ..+ . ...++.+..+ .+...|.|.+++
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 91 (232)
T 3qhz_H 12 VKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMTNMD 91 (232)
T ss_dssp ECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred ECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEECcCC
Confidence 789999999999973111 23345999731 111 0 1246666654 366789999999
Q ss_pred cCCceEEEEEEEeCce--------eeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeee
Q psy2166 371 SHDSGEYVCRAWNKYG--------EDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQ 442 (805)
Q Consensus 371 ~~d~G~Y~C~a~n~~g--------~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (805)
.+|+|.|.|.+.+..+ .......|.|..
T Consensus 92 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~-------------------------------------------- 127 (232)
T 3qhz_H 92 PVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSS-------------------------------------------- 127 (232)
T ss_dssp GGGCEEEEEEEECCC---CCCCCCEECCCEEEEECS--------------------------------------------
T ss_pred hhhCEEEEEEEeeccCccccccceeeCCCeEEEEec--------------------------------------------
Confidence 9999999999987631 111223444421
Q ss_pred ecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEee
Q psy2166 443 ISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTP 522 (805)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~ 522 (805)
....+|.+....+... +..|+.++|.|.+.+
T Consensus 128 ------------------------------------------------~~~~~P~v~~~~~~~~-~~~g~~v~L~C~~~~ 158 (232)
T 3qhz_H 128 ------------------------------------------------ASTKGPSVFPLAPSSK-STSGGTAALGCLVKD 158 (232)
T ss_dssp ------------------------------------------------SCCBCCEEEEECC--------CEEEEEEEEEE
T ss_pred ------------------------------------------------CCCCCCEEEEeccccc-ccCCCcEEEEEEEee
Confidence 1134566654333332 567999999999996
Q ss_pred CCCCCcEEEEEECCEEccCCCceEEEe-eCC---EEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 523 VTDPDLVVEWFYNGKKLPHGHRYRTFH-DFG---IVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 523 ~g~p~~~v~W~~~g~~l~~~~~~~~~~-~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
..++.+.++|+++|..+.......... ++. .+.|.|.....+| |.|+|.|.|..+.......|.+
T Consensus 159 ~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~ 227 (232)
T 3qhz_H 159 YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP 227 (232)
T ss_dssp EBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred EeCCCeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCC
Confidence 433366899999986442110000111 111 2468899888888 9999999999888777666654
|
| >2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-13 Score=112.42 Aligned_cols=89 Identities=19% Similarity=0.321 Sum_probs=79.9
Q ss_pred ecCCCCceecCCCcEEEEEEEecCCC-CCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCe
Q psy2166 70 VPLKPEFKLGEAQPLHLEAQVEPKND-PNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAG 148 (805)
Q Consensus 70 ~~~~~~~~v~~G~~v~L~C~~~~~~~-p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g 148 (805)
..++.++.+.+|+.++|.|.+. +. |.+.|.|+|++..+..+.++.+...++..+|.|.+++.+|+|.|+|.|.|..|
T Consensus 5 ~~~~~~~~v~~G~~v~l~C~~~--g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g 82 (97)
T 2bk8_A 5 SGQIMHAVGEEGGHVKYVCKIE--NYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYG 82 (97)
T ss_dssp ECCCCCEEECTTCCEEEEEEEE--SCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSC
T ss_pred eccCcCEEEcCCCcEEEEEEEe--ccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCC
Confidence 3455578999999999999999 55 88999999999999998999988788888999999999999999999999999
Q ss_pred eEEEEEEEEEec
Q psy2166 149 ETFTSTTIYCST 160 (805)
Q Consensus 149 ~~~~~~~l~V~~ 160 (805)
.....+.|.|..
T Consensus 83 ~~~~~~~l~V~~ 94 (97)
T 2bk8_A 83 EDSSYAELFVKG 94 (97)
T ss_dssp EEEEEEEEEETT
T ss_pred eEeEEEEEEEEe
Confidence 999888888854
|
| >3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-14 Score=143.22 Aligned_cols=168 Identities=14% Similarity=0.196 Sum_probs=110.3
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEEC--CEE---cc--C----------CC-ceEEEEeCcEEEEEEcccCcCCceEE
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFHN--GKP---IF--H----------KN-RVKMVSDFGFVVMDIAYVQSHDSGEY 377 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~--g~~---l~--~----------~~-~~~~~~~~~~~~l~i~~v~~~d~G~Y 377 (805)
+.+|+.++|.|.+. +.+.+.+.|+|. +.. +. . .. ++.+..+.... |.|.+++.+|+|.|
T Consensus 13 v~~G~~v~L~C~~~--~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~~~DsG~Y 89 (253)
T 3to4_D 13 VPRGQAVNLRCILK--NSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVANMSQGRTL 89 (253)
T ss_dssp EESSCCEEEEEECS--CTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEESCSSCEEE
T ss_pred EeCCCcEEEEEEeC--CCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCChhhCeEE
Confidence 78999999999986 777889999982 111 10 0 01 44443333222 99999999999999
Q ss_pred EEEEEeCce------eeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecC
Q psy2166 378 VCRAWNKYG------EDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKE 451 (805)
Q Consensus 378 ~C~a~n~~g------~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (805)
.|.+.+..+ .......|.|...
T Consensus 90 ~C~~~~~~~~~~~~~~~~~~t~l~V~~~---------------------------------------------------- 117 (253)
T 3to4_D 90 YCTSSADHWTNTGQLYFGEGSKLTVLED---------------------------------------------------- 117 (253)
T ss_dssp EEEEECSCCSTTCCEEECCCEEEEEESC----------------------------------------------------
T ss_pred EEEEecCCCCcccceEECCCEEEEEecC----------------------------------------------------
Confidence 999987643 1112234554321
Q ss_pred CceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCc-EE
Q psy2166 452 GQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDL-VV 530 (805)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~-~v 530 (805)
.....+|.+....+....+..|+.++|.|.+.+. .|.+ .+
T Consensus 118 --------------------------------------~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~-~P~~i~v 158 (253)
T 3to4_D 118 --------------------------------------LKNVFPPEVAVFEPSEAEISHTQKATLVCLATGF-YPDHVEL 158 (253)
T ss_dssp --------------------------------------STTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEE-BSSCEEE
T ss_pred --------------------------------------CCCCCCCeEEEeCCChhhcccCCceEEEEEEceE-ECCcEEE
Confidence 1113567766655444445678999999999963 4555 99
Q ss_pred EEEECCEEccCCCceEE---E-----eeCCE---EEEEEccCCCCC-CEEEEEEEEcCC
Q psy2166 531 EWFYNGKKLPHGHRYRT---F-----HDFGI---VILDILYCYEEN-SGVYECRATNKY 577 (805)
Q Consensus 531 ~W~~~g~~l~~~~~~~~---~-----~~~~~---~~L~i~~v~~~d-~G~Y~C~a~n~~ 577 (805)
+|+|||..+..+..... . .++.. +.|.|.....+| .|.|+|.|.|..
T Consensus 159 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~ 217 (253)
T 3to4_D 159 SWWVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG 217 (253)
T ss_dssp EEEETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred EEEECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence 99999999865322110 0 12222 468888877777 779999999864
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.2e-14 Score=116.76 Aligned_cols=93 Identities=17% Similarity=0.178 Sum_probs=80.5
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCC----------CeEEEeeCcEEEEEEcCCCC
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH----------RIRTVHAFGMVVLEILGTKI 759 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~----------~~~~~~~~~~~~L~i~~v~~ 759 (805)
.+|.|...+.+. .+.+|+.+.|.|.+. + .|.++|+|||++|..+. ++.+..++....|.|.++..
T Consensus 7 p~~~~~~~l~d~-~v~eG~~a~f~C~vs--~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~ 81 (112)
T 2e6q_A 7 GTARLVAGLEDV-QVYDGEDAVFSLDLS--T--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKH 81 (112)
T ss_dssp SCCCEEECCCCE-EEETTCEEEEEEEES--S--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCS
T ss_pred CCcEEecCCCCe-EEcCCCcEEEEEEEC--C--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCH
Confidence 468999999999 999999999999998 6 67899999999999988 88888888888999999999
Q ss_pred CCCEEEEEEEEcCCccEEEEEEEEEEEeCCC
Q psy2166 760 EDTGVYTCRATNKWGQAEISVNLECVVWSPS 790 (805)
Q Consensus 760 ~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~ 790 (805)
+|+|.|+|... +....+++|+|+..|-.
T Consensus 82 ~D~G~Y~~~~~---~~~~ssA~L~V~~~p~~ 109 (112)
T 2e6q_A 82 QDSGALVGFSC---PGVQDSAALTIQESSGP 109 (112)
T ss_dssp TTCSEEEEEEE---TTEEEEEEEEEECSSCS
T ss_pred HHCccEEEEEE---CCeeEEEEEEEeCCCcc
Confidence 99999977443 34577999999865543
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.7e-15 Score=122.39 Aligned_cols=90 Identities=14% Similarity=0.159 Sum_probs=79.6
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCC----CeEEEeeCcEEEEEEcCCCCCCCEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH----RIRTVHAFGMVVLEILGTKIEDTGVY 765 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~----~~~~~~~~~~~~L~i~~v~~~d~G~Y 765 (805)
.||.|...+.+. .+.+|+.+.|.|.+. |.| +.+.|+|||+.+..+. ++.+..+++...|.|.++..+|+|.|
T Consensus 7 ~p~~~~~~~~~~-~v~~G~~v~l~C~~~--~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y 82 (101)
T 2edk_A 7 GPVLIVTPLEDQ-QVFVGDRVEMAVEVS--EEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRY 82 (101)
T ss_dssp CCCCEEECCCCE-EEESSCCCBCCEEES--CSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBE
T ss_pred CCCEEEecCCce-EEcCCCCEEEEEEEe--CCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEE
Confidence 678999888888 999999999999998 888 9999999999998877 66888888888999999999999999
Q ss_pred EEEEEcCCccEEEEEEEEEEEe
Q psy2166 766 TCRATNKWGQAEISVNLECVVW 787 (805)
Q Consensus 766 ~C~a~N~~G~~~~~~~l~V~~~ 787 (805)
+|.|.| ...+++|.|...
T Consensus 83 ~C~a~n----~~~~~~l~V~~~ 100 (101)
T 2edk_A 83 QVITNG----GQCEAELIVEEK 100 (101)
T ss_dssp EEECSS----CEECCBEEEECC
T ss_pred EEEEcC----CcEEEEEEEeCC
Confidence 999988 556778888653
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=115.72 Aligned_cols=92 Identities=21% Similarity=0.236 Sum_probs=82.2
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
.+|.|...+.+.+.+.+|+.+.|.|.+. .|.+.|.|+|+|..+..+.++.+..++....|.|.++..+|+|.|+|.|
T Consensus 6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~---~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 82 (100)
T 2yuv_A 6 SGAAFAKILDPAYQVDKGGRVRFVVELA---DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA 82 (100)
T ss_dssp SSCCEEECCCSCEEECTTEEEEEEEEES---CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE
T ss_pred CCCeEEecCCCccEEcCCCcEEEEEEec---CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE
Confidence 5899998888743899999999999996 4889999999999999999999888888889999999999999999999
Q ss_pred EcCCccEEEEEEEEEEEeC
Q psy2166 770 TNKWGQAEISVNLECVVWS 788 (805)
Q Consensus 770 ~N~~G~~~~~~~l~V~~~~ 788 (805)
|....++.|.|...|
T Consensus 83 ----g~~~~~~~l~V~~~P 97 (100)
T 2yuv_A 83 ----GDEKCSTELFVRSGP 97 (100)
T ss_dssp ----TTEEEEEEEEECCSC
T ss_pred ----CCceEEEEEEEecCC
Confidence 888899999987543
|
| >3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=156.88 Aligned_cols=146 Identities=14% Similarity=0.228 Sum_probs=105.9
Q ss_pred CCCeEEEEECCEEcc------------CCCceEEEeeCCEEEEEeccCCCCCcEEEEEEEEeCCcce-EEEEEEEEeecc
Q psy2166 599 QLPEVEWFYNGKKLP------------HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD-VTKASLKCVSKT 665 (805)
Q Consensus 599 ~~p~v~W~~~g~~l~------------~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p 665 (805)
|.+.+.|+|++..+. ...+..+..++ .|.|.+++.+|+|.|+|.+.|..|.. ...+.|.|..+|
T Consensus 395 ~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~ 471 (581)
T 3o3u_N 395 PPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNG---SLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIP 471 (581)
T ss_dssp SSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTS---CEEESSCCGGGCEEEEEEEECTTSCEEEEEEEEEEEBCC
T ss_pred CCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCc---eEEEeccccccCeEEEEEEEcCCCceeEEEEEEEEEcCC
Confidence 567999999875321 12344444333 49999999999999999999999988 778899998654
Q ss_pred ccccccccccccCCCCCCCCCCCCCCCeeeecCCcccccCCCCe-EEEEEEEeecC-CCCeEEEEEECCEEccCCC-CeE
Q psy2166 666 NLILESQLPELRRQPAGVPDSEDGRPPQFTSEFQHLSNLSEGEI-AHFEASLIPVG-DQTMTVEFLYNGKPIEASH-RIR 742 (805)
Q Consensus 666 ~~~~~~~~p~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~-~~l~C~~~~~g-~p~~~v~W~~~g~~l~~~~-~~~ 742 (805)
.+|.+..... .+.+|+. +.|.|.+. | +|.|.|+|+|||+.+.... ++.
T Consensus 472 ------------------------~~p~i~~~~~---~~~~~~~~~~l~C~~~--~~~P~~~i~W~~~g~~l~~~~~~~~ 522 (581)
T 3o3u_N 472 ------------------------GKPEIVDSAS---ELTAGVPNKVGTCVSE--GSYPAGTLSWHLDGKPLVPNEKGVS 522 (581)
T ss_dssp ------------------------CCCEEESCCS---EECTTSCEEEEEEEEE--EEBSCCEEEEEETTEECCTTSTTEE
T ss_pred ------------------------CCCEEEcCCc---ccccCCceeEEEEECC--CCCCCCeEEEEECCEECCCCCCeEE
Confidence 3555554433 3455555 56799998 6 6999999999999987643 332
Q ss_pred EEe------eCc----EEEEEEcCCC-CCCCEEEEEEEEcCCccE
Q psy2166 743 TVH------AFG----MVVLEILGTK-IEDTGVYTCRATNKWGQA 776 (805)
Q Consensus 743 ~~~------~~~----~~~L~i~~v~-~~d~G~Y~C~a~N~~G~~ 776 (805)
+.. +.| .++|+|.+++ .++.|.|+|+|+|.++..
T Consensus 523 ~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~ 567 (581)
T 3o3u_N 523 VKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRH 567 (581)
T ss_dssp EEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCSS
T ss_pred EEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCCC
Confidence 211 122 3579999998 556899999999997543
|
| >3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.7e-14 Score=118.70 Aligned_cols=90 Identities=24% Similarity=0.407 Sum_probs=74.3
Q ss_pred CCCeeeecC----CcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCe---EEEeeCcEEEEEEcCCCCCCC
Q psy2166 690 RPPQFTSEF----QHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI---RTVHAFGMVVLEILGTKIEDT 762 (805)
Q Consensus 690 ~~P~~~~~~----~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~---~~~~~~~~~~L~i~~v~~~d~ 762 (805)
.||.|...+ ... .+.+|+.+.|.|.+. |.|.|.+.|+|+|..+....++ ...... ..|.|.+++.+|+
T Consensus 3 ~~P~~~~~~~~~~~~~-~v~~G~~v~l~C~~~--g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~--~~L~i~~v~~~D~ 77 (100)
T 3caf_A 3 RAPYWTNTEKMEKRLH-AVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH--WSLIMESVVPSDK 77 (100)
T ss_dssp EEEEESCTTTTSCCEE-EECTTCCEEEECCEE--EESCCEEEEEETTEECCGGGSTTCCEEEGGG--TEEEECSCCGGGC
T ss_pred CCCEeEcCccccccEE-EecCCCEEEEEEEcc--ccCCCEEEEEECCEEcccccccccEEEecCe--EEEEEccCCcCCC
Confidence 466776544 234 789999999999998 9999999999999998876442 333223 3799999999999
Q ss_pred EEEEEEEEcCCccEEEEEEEEE
Q psy2166 763 GVYTCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 763 G~Y~C~a~N~~G~~~~~~~l~V 784 (805)
|.|+|.|.|..|....++.|.|
T Consensus 78 G~Y~C~a~N~~g~~~~~~~l~V 99 (100)
T 3caf_A 78 GNYTCVVENEYGSINHTYHLDV 99 (100)
T ss_dssp EEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEEEeCCCEEEEEEEEEE
Confidence 9999999999999999998887
|
| >1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A | Back alignment and structure |
|---|
Probab=99.50 E-value=7.4e-14 Score=114.93 Aligned_cols=90 Identities=18% Similarity=0.242 Sum_probs=75.0
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECC--EEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNG--KKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECR 572 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g--~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 572 (805)
+|.|...+.. ..+.+|+.+.|.|.+. |.|.|.++|+|+| ..+.... .+........|.|.++..+|+|.|+|.
T Consensus 2 ~P~i~~~~~~-~~v~~G~~~~l~C~~~--g~P~p~i~W~k~~~~~~~~~~~--~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 76 (93)
T 1wit_A 2 KPKILTASRK-IKIKAGFTHNLEVDFI--GAPDPTATWTVGDSGAALAPEL--LVDAKSSTTSIFFPSAKRADSGNYKLK 76 (93)
T ss_dssp CCEECCCCCE-EEECTTBCCEEEEEEE--CCSSCEEEEECSTTTCBCSTTS--EEEEETTEEEEECTTBCGGGCEEEEEE
T ss_pred CCeEEcCCCc-eEEeCCCEEEEEEEEE--EcCCCEEEEEECCCCcccCCcE--EEEecCCEEEEEECCCChhcCEEEEEE
Confidence 5777655544 4489999999999999 7899999999999 8886553 334445667899999999999999999
Q ss_pred EEcCCcceEEEEEEEEe
Q psy2166 573 ATNKYGSDVTKASLKCV 589 (805)
Q Consensus 573 a~n~~g~~~~~~~l~V~ 589 (805)
|.|..|.....+.|.|.
T Consensus 77 a~N~~G~~~~~~~l~V~ 93 (93)
T 1wit_A 77 VKNELGEDEAIFEVIVQ 93 (93)
T ss_dssp EEETTEEEEEEEEEEEC
T ss_pred EEcCCCeEEEEEEEEEC
Confidence 99999999988888873
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.8e-14 Score=119.78 Aligned_cols=94 Identities=16% Similarity=0.142 Sum_probs=76.1
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCC---CCeEEEEEECCE-EccC--CCCeEEEe--eC----cEEEEEEcCC
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGD---QTMTVEFLYNGK-PIEA--SHRIRTVH--AF----GMVVLEILGT 757 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~---p~~~v~W~~~g~-~l~~--~~~~~~~~--~~----~~~~L~i~~v 757 (805)
.++.|...|.+. .+.+|+.++|.|.+. |. |.|.|+|||++. .+.. ..++.+.. +. ....|+|.++
T Consensus 11 ~~~~f~~~P~~v-~V~eG~~v~L~C~v~--g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v 87 (118)
T 2edn_A 11 PTGVFLKKPDSV-SVETGKDAVVVAKVN--GKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKV 87 (118)
T ss_dssp CSSSCSBCCCCC-EEETTSCEECCEEEE--TTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSC
T ss_pred CcceEEECCCCe-EEeCCCCEEEEEEEe--ccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeC
Confidence 457888888888 999999999999998 64 789999999752 2222 23444422 11 2568999999
Q ss_pred CCCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 758 KIEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 758 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
..+|+|.|+|+|.|..|..+..+.|+|..
T Consensus 88 ~~~D~G~Y~Cevsn~~g~~s~~~~L~V~~ 116 (118)
T 2edn_A 88 VLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116 (118)
T ss_dssp CTTTCSCEEEEEECSSCEEEEEECCEEEC
T ss_pred ChhhCEEEEEEEEEcCCcEEEEEEEEEEc
Confidence 99999999999999999999999999975
|
| >2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.8e-13 Score=143.56 Aligned_cols=170 Identities=14% Similarity=0.164 Sum_probs=113.3
Q ss_pred ccCCCeEEEEEEEeecCC--C-CcEEEEEECCEEccCCC--ceEEEEe---CcEEEEEEcccCcCCceEEEEEEEeCcee
Q psy2166 316 LKDGDSAHFECTLTPVND--P-ELKVEWFHNGKPIFHKN--RVKMVSD---FGFVVMDIAYVQSHDSGEYVCRAWNKYGE 387 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~--p-~~~v~W~~~g~~l~~~~--~~~~~~~---~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~ 387 (805)
+.+|+.++|.|.+.+ .. | ...|.|++++..+.... ......+ .....|.|..+..+|.|.|+|.+.+..+.
T Consensus 180 ~~~g~~v~L~C~~~g-~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~~ 258 (376)
T 2aty_A 180 LTITLTPKVTCVVVD-ISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFP 258 (376)
T ss_pred eeeCCeeEEEEEEec-cccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCCC
Confidence 678999999999984 22 3 24799999986653211 0000111 12336999999999999999999988764
Q ss_pred eEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceEEEEEEEeccCCC
Q psy2166 388 DFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDP 467 (805)
Q Consensus 388 ~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (805)
......+.+
T Consensus 259 ~~~~~~v~~----------------------------------------------------------------------- 267 (376)
T 2aty_A 259 APIEKTISK----------------------------------------------------------------------- 267 (376)
T ss_pred CceEEEEcC-----------------------------------------------------------------------
Confidence 333222221
Q ss_pred CceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceE-
Q psy2166 468 DLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR- 546 (805)
Q Consensus 468 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~- 546 (805)
...+..+|.+.+..+... ..+|+.++|.|.+.++..+.+.|+|+|||+++.......
T Consensus 268 ---------------------~~~~~~~P~v~v~~~~~~-~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~ 325 (376)
T 2aty_A 268 ---------------------TKGRPKAPQLYTIPPPKE-QMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQP 325 (376)
T ss_pred ---------------------CCCCCcCCeEEeeCCCHH-HhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCc
Confidence 012246777777666554 556999999999996444578999999999885432211
Q ss_pred -EEeeCC---EEEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 547 -TFHDFG---IVILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 547 -~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
...++. .+.|.|.....+|.|.|+|.|.|..-.
T Consensus 326 ~~~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l~ 362 (376)
T 2aty_A 326 IMNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 362 (376)
T ss_pred eECCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCCC
Confidence 122222 345778777777899999999987543
|
| >2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.3e-14 Score=117.27 Aligned_cols=96 Identities=21% Similarity=0.437 Sum_probs=79.2
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceE-EEeeCCEEEEEEccCCCCCCEEEEE
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR-TFHDFGIVILDILYCYEENSGVYEC 571 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C 571 (805)
..+|.|...+.... +.+|++++|.|.+. |.|.+.+.|+|+|..+....+.. ....++...|.|.+++.+|+|.|+|
T Consensus 3 ~~~P~~~~~p~~~~-~~~G~~~~l~C~~~--g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 79 (100)
T 2kdg_A 3 MGPPRFIQVPENMS-IDEGRFCRMDFKVS--GLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYAC 79 (100)
T ss_dssp CEEEECCCCCCCEE-EETTCCEEEEEECE--EESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEE
T ss_pred CCCCeEEeCCCCEE-ecCCCEEEEEEEEE--eeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEE
Confidence 35677766555544 89999999999999 67888999999999997765433 3445566789999999999999999
Q ss_pred EEEcCCcceEEEEEEEEeee
Q psy2166 572 RATNKYGSDVTKASLKCVSK 591 (805)
Q Consensus 572 ~a~n~~g~~~~~~~l~V~~~ 591 (805)
.|.|..|.....+.|.|..+
T Consensus 80 ~a~n~~g~~~~~~~l~V~~~ 99 (100)
T 2kdg_A 80 VAKNRAGEATFTVQLDVLAK 99 (100)
T ss_dssp EEEETTEEEEEEEEEEEECC
T ss_pred EEEcCCCeEEEEEEEEEEec
Confidence 99999999999999998764
|
| >1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-13 Score=113.56 Aligned_cols=93 Identities=26% Similarity=0.464 Sum_probs=79.6
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCC-ceEEEecCcEEEEEEcccccCCCeEEEEEE
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS-RFKTTADFGFVTLDLTEVYDRDQGIYTCRA 143 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 143 (805)
+|.|...+. ...+.+|+.++|.|.+. +.|.+.|.|+|++..+.... ++.+..+++.++|.|.+++.+|+|.|+|.|
T Consensus 5 ~P~~~~~~~-~~~v~~G~~v~l~C~~~--g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 81 (99)
T 1u2h_A 5 PPTFKVSLM-DQSVREGQDVIMSIRVQ--GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKA 81 (99)
T ss_dssp EEEEEECCC-CEEEETTCCEEEEEEEE--EESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEE
T ss_pred CCEEEEcCC-ceEecCCCEEEEEEEEE--EcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEE
Confidence 566666554 67899999999999998 67888999999999987664 566666777789999999999999999999
Q ss_pred EeCCeeEEEEEEEEEec
Q psy2166 144 WNLAGETFTSTTIYCST 160 (805)
Q Consensus 144 ~n~~g~~~~~~~l~V~~ 160 (805)
.|..|.....+.|.|..
T Consensus 82 ~N~~g~~~~~~~l~V~~ 98 (99)
T 1u2h_A 82 VNEYGARQCEARLEVRG 98 (99)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EECCCceeEEEEEEEEC
Confidence 99999998888888864
|
| >2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=113.65 Aligned_cols=88 Identities=20% Similarity=0.297 Sum_probs=79.8
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
..|.|...+.+. .+.+|+.+.|.|.+ +.|.+.|.|+|+|..+..+.++.+..++....|.|.++..+|+|.|+|.|
T Consensus 7 ~~~~~~~~~~~~-~v~~G~~v~l~C~~---~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 82 (95)
T 2k1m_A 7 PVSAFSKKPRSV-EVAAGSPAVFEAET---ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA 82 (95)
T ss_dssp CCCCCSBCCCCE-EEETTSCEEEEEEC---SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE
T ss_pred CCCeeEeCCCcE-EEeCCCcEEEEEEe---CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE
Confidence 457888888888 99999999999998 67889999999999999888999888888889999999999999999999
Q ss_pred EcCCccEEEEEEEEEE
Q psy2166 770 TNKWGQAEISVNLECV 785 (805)
Q Consensus 770 ~N~~G~~~~~~~l~V~ 785 (805)
|....+++|.|.
T Consensus 83 ----g~~~~~~~l~V~ 94 (95)
T 2k1m_A 83 ----GSSKVKFDLKVI 94 (95)
T ss_dssp ----TTEEEEEEEEEE
T ss_pred ----CCceEEEEEEEe
Confidence 778888999885
|
| >3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.3e-13 Score=134.91 Aligned_cols=180 Identities=11% Similarity=0.130 Sum_probs=111.9
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEEC--CE---Ec--------------cCCCceEEEEe--CcEEEEEEcccCcCCc
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFHN--GK---PI--------------FHKNRVKMVSD--FGFVVMDIAYVQSHDS 374 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~--g~---~l--------------~~~~~~~~~~~--~~~~~l~i~~v~~~d~ 374 (805)
+.+|+.++|.|.+.+...+...+.|+|. +. .+ ....++.+..+ .....|+|.+++.+|+
T Consensus 11 v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds 90 (248)
T 3u2s_H 11 VQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSLRVEDT 90 (248)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred EeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCHHHC
Confidence 7899999999999732234568999973 21 11 01256666554 4667899999999999
Q ss_pred eEEEEEEEeCce----------------------eeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCc
Q psy2166 375 GEYVCRAWNKYG----------------------EDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAP 432 (805)
Q Consensus 375 G~Y~C~a~n~~g----------------------~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 432 (805)
|.|.|.+.+..+ .......|.|..
T Consensus 91 G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~---------------------------------- 136 (248)
T 3u2s_H 91 ATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSS---------------------------------- 136 (248)
T ss_dssp EEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECS----------------------------------
T ss_pred EEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcc----------------------------------
Confidence 999999986421 011112333321
Q ss_pred ccCCCceeeeecceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCC
Q psy2166 433 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQ 512 (805)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~ 512 (805)
....+|.+....+... +..|+
T Consensus 137 ----------------------------------------------------------~~~~~P~v~~~~~~~~-~~~g~ 157 (248)
T 3u2s_H 137 ----------------------------------------------------------ASTKGPSVFPLAPSSK-STSGG 157 (248)
T ss_dssp ----------------------------------------------------------CCCBCCEEEEECCC-------C
T ss_pred ----------------------------------------------------------cCCCCCEEEEeCCCcc-ccCCC
Confidence 1134566654444333 56799
Q ss_pred eEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEe-eCC---EEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEE
Q psy2166 513 SAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFH-DFG---IVILDILYCYEENSGVYECRATNKYGSDVTKASLKC 588 (805)
Q Consensus 513 ~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~-~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V 588 (805)
.++|.|.+.+..++.+.++|+++|..+.......... ++. .+.|.|.....+| |.|+|.|.|..+.......|.+
T Consensus 158 ~~~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~ 236 (248)
T 3u2s_H 158 TAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP 236 (248)
T ss_dssp EEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred cEEEEEEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEcc
Confidence 9999999997433367899999986432110000111 111 2358888888888 9999999999887776665554
Q ss_pred e
Q psy2166 589 V 589 (805)
Q Consensus 589 ~ 589 (805)
.
T Consensus 237 ~ 237 (248)
T 3u2s_H 237 K 237 (248)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.3e-13 Score=115.33 Aligned_cols=99 Identities=30% Similarity=0.385 Sum_probs=84.3
Q ss_pred CCcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCC-CCceEEEecC-cEEEEEEcccccCCCeE
Q psy2166 61 ETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL-GSRFKTTADF-GFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 61 ~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~-~~~~~~~~~~-~~~~L~I~~~~~~D~G~ 138 (805)
....+|.|+..+. ++.+.+|+.++|.|.+. |.|.+.|.|+|++..+.. ..++.+..++ +.++|.|.+++.+|+|.
T Consensus 11 ~~~~~p~f~~~p~-~~~v~~G~~v~L~C~~~--g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 87 (116)
T 2kkq_A 11 EHKRAPMFIYKPQ-SKKVLEGDSVKLECQIS--AIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGW 87 (116)
T ss_dssp CCCBCCCBSSCCC-CEEEETTEEEEEEEEBC--CBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEE
T ss_pred CCCCCCeEEeCCC-cEEEeCCCcEEEEEEEe--ccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEE
Confidence 3455678876665 68999999999999998 688889999999999885 4678776654 56689999999999999
Q ss_pred EEEEEEeCCeeEEEEEEEEEeccc
Q psy2166 139 YTCRAWNLAGETFTSTTIYCSTKE 162 (805)
Q Consensus 139 Y~C~a~n~~g~~~~~~~l~V~~~~ 162 (805)
|+|.|.|..|.....+.|.|..++
T Consensus 88 Y~C~a~N~~G~~~~~~~l~V~~~p 111 (116)
T 2kkq_A 88 YTVSAVNEAGVTTCNTRLDVTARP 111 (116)
T ss_dssp EEEEEEETTEEEEEEEEEEEECCS
T ss_pred EEEEEEcCCCeEEEEEEEEEeCCC
Confidence 999999999999999999998755
|
| >2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.9e-14 Score=116.74 Aligned_cols=93 Identities=23% Similarity=0.222 Sum_probs=84.2
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
.||.|...+.+. .+.+|+.+.|.|. . +.|.+.|+|+|+|..+..+.++.+..+++...|.|.+++.+|+|.|+|.
T Consensus 7 ~pp~~~~~~~~~-~v~~G~~v~l~C~-~--~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~- 81 (103)
T 2dku_A 7 GANCFTEELTNL-QVEEKGTAVFTCK-T--EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD- 81 (103)
T ss_dssp CCCCCSSCCCCE-EEETTSEEEEEEE-C--SSCCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE-
T ss_pred CCCEeEecCCcE-EEeCCCcEEEEEE-e--CCCCCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE-
Confidence 688999889888 9999999999999 4 8899999999999999999999888888888999999999999999998
Q ss_pred EcCCccEEEEEEEEEEEeCCC
Q psy2166 770 TNKWGQAEISVNLECVVWSPS 790 (805)
Q Consensus 770 ~N~~G~~~~~~~l~V~~~~~~ 790 (805)
+|....+++|.|...|.+
T Consensus 82 ---~g~~~~~~~l~V~~~p~~ 99 (103)
T 2dku_A 82 ---IGQAQSRAQLLVQGRRSG 99 (103)
T ss_dssp ---CSSCBCCEEEEEECSCCC
T ss_pred ---eCCceEEEEEEEeCccCC
Confidence 688888999999875544
|
| >2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A | Back alignment and structure |
|---|
Probab=99.47 E-value=5.3e-14 Score=118.40 Aligned_cols=95 Identities=19% Similarity=0.363 Sum_probs=84.6
Q ss_pred CCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 689 ~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
..||.|...+.+. .+.+|+.+.|.|.+. |.|.+ |.|+|+|..+..+.++.+..++....|.|.+++.+|+|.|+|.
T Consensus 6 ~~pp~~~~~~~~~-~v~~G~~v~l~C~~~--~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (103)
T 2e7b_A 6 SGPVRFQEALKDL-EVLEGGAATLRCVLS--SVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS 81 (103)
T ss_dssp CCCCCCTBCCCCE-EEESSSCEEEEEECS--SCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE
T ss_pred CCCCEEEecCccE-EEECCCcEEEEEEEe--CCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE
Confidence 3688898888888 999999999999998 88988 9999999999988899988888888999999999999999998
Q ss_pred EEcCCccEEEEEEEEEEEeCCCc
Q psy2166 769 ATNKWGQAEISVNLECVVWSPSQ 791 (805)
Q Consensus 769 a~N~~G~~~~~~~l~V~~~~~~~ 791 (805)
+|....++.|.|...|..+
T Consensus 82 ----~g~~~~~~~l~V~~~p~~~ 100 (103)
T 2e7b_A 82 ----FGDQTTSATLTVTALPSGP 100 (103)
T ss_dssp ----CSSCBCCBCEEEECCCCCS
T ss_pred ----ECCcEEEEEEEEEeccccc
Confidence 6778888999998755443
|
| >3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-13 Score=132.19 Aligned_cols=177 Identities=16% Similarity=0.206 Sum_probs=111.5
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEEC--CEe---c--------------CCCCceEEEecC--cEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKP---L--------------ELGSRFKTTADF--GFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~---i--------------~~~~~~~~~~~~--~~~~L~I~~~~~ 133 (805)
.+.+.+|++|+|.|.+.+...+...+.|+|. +.. + ...+|+.+..+. +.++|.|.+++.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 88 (226)
T 3mlr_H 9 GEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQA 88 (226)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCG
T ss_pred CEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCc
Confidence 5789999999999999742234568999983 211 1 112477766543 577899999999
Q ss_pred CCCeEEEEEEEeCCe-------eE--EEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCc
Q psy2166 134 RDQGIYTCRAWNLAG-------ET--FTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQ 204 (805)
Q Consensus 134 ~D~G~Y~C~a~n~~g-------~~--~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 204 (805)
+|+|.|.|.+.+..+ .. ...+.|.|.... ..+|.
T Consensus 89 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~-------------------------------------~~~P~ 131 (226)
T 3mlr_H 89 SDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGT-------------------------------------TKGPS 131 (226)
T ss_dssp GGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCC-------------------------------------CBCCE
T ss_pred ccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCC-------------------------------------CCCCc
Confidence 999999999976421 01 122345553211 13455
Q ss_pred eecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcE--EEEEEcC----eEEEEEcCCCCcccEEEEE
Q psy2166 205 FTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI--RTVHAFG----MVVLEILGTKIEDTGVYTC 278 (805)
Q Consensus 205 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~--~~~~~~~----~~~L~i~~~~~~d~G~Y~C 278 (805)
+....+.. .+.+|+.++|.|.+.....+.+.+.| ++..+...... .....++ .+.|.|.....+| |.|+|
T Consensus 132 i~~~~~~~-~~~~g~~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC 207 (226)
T 3mlr_H 132 VFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYIC 207 (226)
T ss_dssp EEEEEEEE-CSTTSSEEEEEEEEEEEBSSCCEEEE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEE
T ss_pred EEEecCcc-cccCCCCEEEEEEEEEEECCCeEEEE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEE
Confidence 54322222 25689999999998643323578999 54433221100 0011111 2478899888889 99999
Q ss_pred EEEcCCeeEEEEEE
Q psy2166 279 RATNKWGQAEISVN 292 (805)
Q Consensus 279 ~~~n~~g~~~~~~~ 292 (805)
.+.|..+.......
T Consensus 208 ~v~h~~~~~~~~~~ 221 (226)
T 3mlr_H 208 NVNHKPSNTKVDKK 221 (226)
T ss_dssp EEEEGGGTEEEEEE
T ss_pred EEEECCCCcCeEEE
Confidence 99998776554443
|
| >1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ... | Back alignment and structure |
|---|
Probab=99.47 E-value=3.6e-13 Score=134.30 Aligned_cols=171 Identities=13% Similarity=0.179 Sum_probs=111.0
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEECC--E--E-cc------------CCCceEEEEe-CcEEEEEEcccCcCCceEE
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFHNG--K--P-IF------------HKNRVKMVSD-FGFVVMDIAYVQSHDSGEY 377 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~g--~--~-l~------------~~~~~~~~~~-~~~~~l~i~~v~~~d~G~Y 377 (805)
+.+|++++|.|.+. .+.+.+.|+|+. . . +. ...++.+..+ .....|.|.+++.+|+|.|
T Consensus 15 v~~G~~v~L~C~~~---~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~Y 91 (252)
T 1oga_E 15 RKEGQNVTLSCEQN---LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAFY 91 (252)
T ss_dssp EETTCCEEECCEEC---SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEEE
T ss_pred EcCCCcEEEEEEeC---CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChhhCEEE
Confidence 88999999999984 357899999852 1 1 10 1235554432 2345799999999999999
Q ss_pred EEEEEeCc---eeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCce
Q psy2166 378 VCRAWNKY---GEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQS 454 (805)
Q Consensus 378 ~C~a~n~~---g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (805)
.|.+.+.. ........|.|....
T Consensus 92 ~C~~~~~~~~~~~~~~~~~l~V~~~~------------------------------------------------------ 117 (252)
T 1oga_E 92 LCASSSRSSYEQYFGPGTRLTVTEDL------------------------------------------------------ 117 (252)
T ss_dssp EEEEESSTTSCCEECCCEEEEEESCG------------------------------------------------------
T ss_pred EEEEecCCccceeECCCEEEEEeccc------------------------------------------------------
Confidence 99999862 111122345553210
Q ss_pred EEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCC-cEEEEE
Q psy2166 455 AHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPD-LVVEWF 533 (805)
Q Consensus 455 ~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~-~~v~W~ 533 (805)
....+|.+....+....+.+|+.++|.|.+.+. .|. +.|+|+
T Consensus 118 ------------------------------------~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~-~P~~~~v~W~ 160 (252)
T 1oga_E 118 ------------------------------------KNVFPPEVAVFEPSEAEISHTQKATLVCLATGF-YPDHVELSWW 160 (252)
T ss_dssp ------------------------------------GGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEE-BSSCEEEEEE
T ss_pred ------------------------------------CCCCCCeEEEECCChhhhccCCceEEEEEEeeE-cCCCcEEEEE
Confidence 013467776654443336689999999999952 354 699999
Q ss_pred ECCEEccCCCceE---EE----eeCC----EEEEEEccCCCC-CCEEEEEEEEcCCcce
Q psy2166 534 YNGKKLPHGHRYR---TF----HDFG----IVILDILYCYEE-NSGVYECRATNKYGSD 580 (805)
Q Consensus 534 ~~g~~l~~~~~~~---~~----~~~~----~~~L~i~~v~~~-d~G~Y~C~a~n~~g~~ 580 (805)
|||+.+..+.... .. ..++ .+.|.|...... |.|.|+|.|.|.....
T Consensus 161 ~~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~ 219 (252)
T 1oga_E 161 VNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE 219 (252)
T ss_dssp ETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCT
T ss_pred ECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence 9999986542211 00 1122 234888766554 6789999999976543
|
| >1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=118.85 Aligned_cols=93 Identities=24% Similarity=0.210 Sum_probs=74.1
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeC----cEEEEEEcCCCCCCCEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF----GMVVLEILGTKIEDTGVY 765 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y 765 (805)
.||.|...... .+ .+...|.|.+. |+|.|.++|+|+|+.+..+.+..+.... ....|.|.++..+|+|.|
T Consensus 7 ~pP~i~~~~~~--~~--~~~~~l~C~~~--g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y 80 (118)
T 1wwc_A 7 YPPRVVSLEEP--EL--RLEHCIEFVVR--GNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNY 80 (118)
T ss_dssp CCCCCCCCCCC--CC--CCEEEEEEEEE--CSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEE
T ss_pred cCCceeccCCC--ee--ccceEEEEEee--eeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEE
Confidence 46666554222 22 36688999999 9999999999999999988776654322 345899999999999999
Q ss_pred EEEEEcCCccEEEEEEEEEEEeC
Q psy2166 766 TCRATNKWGQAEISVNLECVVWS 788 (805)
Q Consensus 766 ~C~a~N~~G~~~~~~~l~V~~~~ 788 (805)
+|.|.|.+|..+.++.|.|...|
T Consensus 81 ~C~a~N~~G~~~~~~~l~v~~~P 103 (118)
T 1wwc_A 81 TLIAKNPLGTANQTINGHFLKEP 103 (118)
T ss_dssp EEEEEETTEEEEEEEEECCSCCC
T ss_pred EEEEECCCCeEeeEEEEEEccCC
Confidence 99999999999999998886543
|
| >2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.8e-13 Score=141.69 Aligned_cols=182 Identities=13% Similarity=0.133 Sum_probs=114.3
Q ss_pred CeEEecCCCCce-ecCCCcEEEEEEEecCC-CC-CceEEEEECCEecCCCCc--eEEEecC---cEEEEEEcccccCCCe
Q psy2166 66 PVFIVPLKPEFK-LGEAQPLHLEAQVEPKN-DP-NLKIEWIFNGKPLELGSR--FKTTADF---GFVTLDLTEVYDRDQG 137 (805)
Q Consensus 66 p~~~~~~~~~~~-v~~G~~v~L~C~~~~~~-~p-~~~v~W~k~g~~i~~~~~--~~~~~~~---~~~~L~I~~~~~~D~G 137 (805)
|.+.+..+.... +..|+.++|.|.+.+.. .| ...|+|+|++..+..... .....++ ....|.|..++.+|+|
T Consensus 167 p~v~~~~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g 246 (376)
T 2aty_A 167 SSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGK 246 (376)
T ss_pred cEEEEeCcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCC
Confidence 333333333344 78999999999998431 13 347999999876542211 0001111 2347999999999999
Q ss_pred EEEEEEEeCCeeEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCceecccccccccCC
Q psy2166 138 IYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQFTSEFQHLSNLSE 217 (805)
Q Consensus 138 ~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~ 217 (805)
.|+|.+.+..+.......+.+.. ....+|.+...+.... ..+
T Consensus 247 ~Y~C~~~~~~~~~~~~~~v~~~~-------------------------------------~~~~~P~v~v~~~~~~-~~~ 288 (376)
T 2aty_A 247 EFKCRVNSAAFPAPIEKTISKTK-------------------------------------GRPKAPQLYTIPPPKE-QMA 288 (376)
T ss_pred EEEEEEecCCCCCceEEEEcCCC-------------------------------------CCCcCCeEEeeCCCHH-Hhc
Confidence 99999998765433222232100 0114566665555442 446
Q ss_pred CceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcEEE-EEEcC----eEEEEEcCCCCcccEEEEEEEEcCCe
Q psy2166 218 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT-VHAFG----MVVLEILGTKIEDTGVYTCRATNKWG 285 (805)
Q Consensus 218 g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~~~-~~~~~----~~~L~i~~~~~~d~G~Y~C~~~n~~g 285 (805)
|+.++|.|.+.....+.++|+|+|+|..+........ ...++ .+.|.|.....+|.|.|+|.|.|...
T Consensus 289 g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l 361 (376)
T 2aty_A 289 KDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGL 361 (376)
T ss_pred CCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence 8999999999532234679999999998754322111 12222 24677877777889999999998754
|
| >1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.47 E-value=4.8e-13 Score=128.65 Aligned_cols=166 Identities=15% Similarity=0.137 Sum_probs=105.9
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEECC--Ee---c-------CCCCceEEEec---CcEEEEEEcccccCCC
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNG--KP---L-------ELGSRFKTTAD---FGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g--~~---i-------~~~~~~~~~~~---~~~~~L~I~~~~~~D~ 136 (805)
.+..+.+.+|+.++|.|.+.. .+ +.|.|+|.. .. + ...+|+.+..+ .+..+|.|.+++.+|+
T Consensus 7 ~p~~v~v~~G~~v~L~C~~~~--~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~ 83 (207)
T 1ypz_E 7 SPSALSLHEGTDSALRCNFTT--TM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDS 83 (207)
T ss_dssp SCSEEEEETTCCEEEEEEESS--CC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGC
T ss_pred CCCeEEEccCCcEEEEEEEeC--CC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHC
Confidence 344678999999999999983 33 479999842 21 1 13468887765 5678999999999999
Q ss_pred eEEEEEEEeCCe---------e--EEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCCCce
Q psy2166 137 GIYTCRAWNLAG---------E--TFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRPPQF 205 (805)
Q Consensus 137 G~Y~C~a~n~~g---------~--~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 205 (805)
|.|.|.+.+..+ . ....+.|.|..... ...+|.+
T Consensus 84 G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~-----------------------------------~~~~P~v 128 (207)
T 1ypz_E 84 GTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQ-----------------------------------PPAKPSV 128 (207)
T ss_dssp EEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCC-----------------------------------CCCCCEE
T ss_pred EEEEEEEecCCcccccccccceeeecCccEEEEccCCC-----------------------------------CCCCCeE
Confidence 999999988632 1 11235677653210 0123433
Q ss_pred ecccccccccCCCceEEEEEEEeeCCCCC-eEEEEEECCEEccCCCcEEEEEEcCeEEEEEcCCCCcccEEEEEEEEcCC
Q psy2166 206 TSEFQHLSNLSEGEIAHFEASLIPVGDQT-MTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKW 284 (805)
Q Consensus 206 ~~~~~~~~~v~~g~~~~l~C~~~~~~~p~-~~i~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 284 (805)
... .+ .++|.|.+.. ..|. +.+.|+++ ..+...........++...+. .....+|.|.|+|.+.|..
T Consensus 129 ~~~--------~~-~~~l~C~~~g-~~P~~~~v~W~~~-~~l~~~~~~~~~~~~g~y~~~-~~~~~~~~~~ytC~v~~~~ 196 (207)
T 1ypz_E 129 FIM--------KN-GTNVACLVKD-FYPKEVTISLRSS-KKIVEFDPAIVISPSGKYSAV-KLGQYGDSNSVTCSVQHNS 196 (207)
T ss_dssp EEE--------EE-TTEEEEEEEE-ESSSCCEEEEECS-SEEEECCCEEEECTTSSEEEE-ECEEESSTTTCEEEEEETT
T ss_pred EEe--------CC-CCeEEEEEee-EeCCCeEEEEecC-CcccCCccceEEcCCCcEEEE-EeecccCCCcEEEEEEECC
Confidence 321 11 2689999853 3454 79999999 666543222112233444443 2233367899999999987
Q ss_pred eeE
Q psy2166 285 GQA 287 (805)
Q Consensus 285 g~~ 287 (805)
+..
T Consensus 197 ~~~ 199 (207)
T 1ypz_E 197 ETV 199 (207)
T ss_dssp EEE
T ss_pred ccE
Confidence 643
|
| >1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=135.05 Aligned_cols=174 Identities=10% Similarity=0.148 Sum_probs=108.3
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEECC--EE---cc-------------CCCceEEEEeC--cEEEEEEcccCcCCce
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFHNG--KP---IF-------------HKNRVKMVSDF--GFVVMDIAYVQSHDSG 375 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~g--~~---l~-------------~~~~~~~~~~~--~~~~l~i~~v~~~d~G 375 (805)
+.+|++++|.|.+.+...+.+.+.|+|.. .. +. ...++.+..+. +...|.|.+++.+|+|
T Consensus 13 ~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D~G 92 (230)
T 1ypz_F 13 RPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEEDEA 92 (230)
T ss_dssp EETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGGGCS
T ss_pred EeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcCChhhCE
Confidence 78999999999997311256789999842 11 10 13456655432 5678999999999999
Q ss_pred EEEEEEEeC--cee--eEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecC
Q psy2166 376 EYVCRAWNK--YGE--DFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKE 451 (805)
Q Consensus 376 ~Y~C~a~n~--~g~--~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (805)
.|.|.+.+. ... ....+.|.|..+..
T Consensus 93 ~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~-------------------------------------------------- 122 (230)
T 1ypz_F 93 IYYCSYGEGSSGFHKVFAEGTKLIVIPSDK-------------------------------------------------- 122 (230)
T ss_dssp EEEEEECCTTTCCCCEECSCEEEEEECCCT--------------------------------------------------
T ss_pred EEEEEEECCCCCcccccCCCEEEEEecccc--------------------------------------------------
Confidence 999999874 111 11234566541100
Q ss_pred CceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCC-CcEE
Q psy2166 452 GQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDP-DLVV 530 (805)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p-~~~v 530 (805)
.+....+|...+..+....+.+|+.++|.|.+.++ .| ++.|
T Consensus 123 -------------------------------------~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~-~P~~~~v 164 (230)
T 1ypz_F 123 -------------------------------------RLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAF-FPDVIRV 164 (230)
T ss_dssp -------------------------------------TCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEE-SSCCCEE
T ss_pred -------------------------------------cCcccCCCCceEECCCchhhccCCcceEEEEEeee-cCCCeEE
Confidence 00000122222222222336779999999999963 35 4699
Q ss_pred EEEE-CCEEccCCCceEEEeeCC----EEEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 531 EWFY-NGKKLPHGHRYRTFHDFG----IVILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 531 ~W~~-~g~~l~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
+|++ ||+.+..+....+...++ .+.|.|..... | |.|+|.|.|..+.
T Consensus 165 ~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~ 216 (230)
T 1ypz_F 165 YWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNK 216 (230)
T ss_dssp EEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCT
T ss_pred EEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCC
Confidence 9999 888775331111122232 24689987765 4 9999999998765
|
| >1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.4e-14 Score=138.83 Aligned_cols=179 Identities=16% Similarity=0.148 Sum_probs=109.5
Q ss_pred CeEEecCCCcccccCCCeEEEEEEEeecCCCC---cEEEEEECCEEccCCC-ceEE-EEe---CcEEEEEEcccCcCCce
Q psy2166 304 PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPE---LKVEWFHNGKPIFHKN-RVKM-VSD---FGFVVMDIAYVQSHDSG 375 (805)
Q Consensus 304 p~~~~~~~~~~~~~~g~~~~l~C~~~~~~~p~---~~v~W~~~g~~l~~~~-~~~~-~~~---~~~~~l~i~~v~~~d~G 375 (805)
|.+....+....+.+|+.++|.|.+. +.+. +.|.| ++..+.... .... ..+ .....|.|.++..+|+|
T Consensus 4 p~v~~~~P~~~~v~~G~~v~L~C~~~--g~~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g 79 (214)
T 1ow0_A 4 PRLSLHRPALEDLLLGSEANLTCTLT--GLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGK 79 (214)
T ss_dssp CCCEEECCCHHHHHHCSSCCCEEEET--TCCSCCCCCCCB--SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTC
T ss_pred CEEEEECcChHHhccCCCcEEEEEEe--eeECCCCeEEEE--cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCC
Confidence 44433333333378999999999997 5432 68999 444432110 0000 000 02346889999999999
Q ss_pred EEEEEEEeCceeeEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecceeeecCCceE
Q psy2166 376 EYVCRAWNKYGEDFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSA 455 (805)
Q Consensus 376 ~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (805)
.|+|.+.|..+.......+.+
T Consensus 80 ~Y~C~~~~~~~~~~~~~~i~~----------------------------------------------------------- 100 (214)
T 1ow0_A 80 TFTCTAAYPESKTPLTATLSK----------------------------------------------------------- 100 (214)
T ss_dssp EEEEEECCSSCSSCEEEEEEC-----------------------------------------------------------
T ss_pred eEEEEEecCCCCCceeEeecc-----------------------------------------------------------
Confidence 999999988764322222211
Q ss_pred EEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEEC
Q psy2166 456 HFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYN 535 (805)
Q Consensus 456 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~ 535 (805)
..+..+|.+.+..+....+..|+.++|.|.+.++.++.+.|+|+||
T Consensus 101 ----------------------------------~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~ 146 (214)
T 1ow0_A 101 ----------------------------------SGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQG 146 (214)
T ss_dssp ----------------------------------CSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEET
T ss_pred ----------------------------------CCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEEC
Confidence 0124567776554433347889999999999963233469999999
Q ss_pred CEEccCCCc----eEEE---eeCCE---EEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 536 GKKLPHGHR----YRTF---HDFGI---VILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 536 g~~l~~~~~----~~~~---~~~~~---~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
|..+..+.. .... .++.. +.|.|.....+|.|.|+|.|.|....
T Consensus 147 g~~l~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~ 200 (214)
T 1ow0_A 147 SQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP 200 (214)
T ss_dssp TEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCT
T ss_pred CEECCCCceeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCC
Confidence 999865421 1212 22222 23555544335689999999997643
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=114.92 Aligned_cols=91 Identities=21% Similarity=0.319 Sum_probs=79.2
Q ss_pred CCCCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCC-CCeEEEeeCcEEEEEEcCCCCCCCEEEE
Q psy2166 688 DGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTVHAFGMVVLEILGTKIEDTGVYT 766 (805)
Q Consensus 688 ~~~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 766 (805)
...+|.|...+.+.+.+.+|+++.|.|.+ +.|.+.|+|+|+|+.+..+ .++.+..+++...|.|.++..+|+|.|+
T Consensus 12 ~~~~p~f~~~~~~~~~v~~G~~v~L~C~~---~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 88 (104)
T 1pd6_A 12 EKKSTAFQKKLEPAYQVSKGHKIRLTVEL---ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQ 88 (104)
T ss_dssp CSTTSSCSEECCSEEEEETTSCEEEEEEC---SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEE
T ss_pred ccCCCEEEEcCCCcEEEecCCCEEEEEEE---cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEE
Confidence 34788998888873389999999999998 5788999999999999887 7888888888889999999999999999
Q ss_pred EEEEcCCccEEEEEEEEEE
Q psy2166 767 CRATNKWGQAEISVNLECV 785 (805)
Q Consensus 767 C~a~N~~G~~~~~~~l~V~ 785 (805)
|.| |....+++|.|+
T Consensus 89 C~a----~~~~~~~~l~V~ 103 (104)
T 1pd6_A 89 CVV----GGEKCSTELFVK 103 (104)
T ss_dssp EEE----TTEEECCEEEEE
T ss_pred EEE----CCCcEEEEEEEe
Confidence 999 557777888875
|
| >2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-13 Score=116.65 Aligned_cols=93 Identities=20% Similarity=0.283 Sum_probs=82.0
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
.||.|...+.+. .+.+|+.++|.|.+. +. |.|.|+|+|..+..+.++.+..++....|.|.+++.+|+|.|+|.|
T Consensus 7 ~pp~~~~~~~~~-~v~~G~~v~l~C~~~--~~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 81 (108)
T 2dm7_A 7 GPARFTQDLKTK-EASEGATATLQCELS--KV--APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMC 81 (108)
T ss_dssp CCCCBCSCCBCC-EEETTSCEEEEEEBS--SS--CCCEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEE
T ss_pred CCCeeeecCCcE-EEeCCCcEEEEEEeC--CC--CeeEEEECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEE
Confidence 689998888888 999999999999987 65 6899999999999889999888888889999999999999999999
Q ss_pred EcCCccEEEEEEEEEEEeCCCc
Q psy2166 770 TNKWGQAEISVNLECVVWSPSQ 791 (805)
Q Consensus 770 ~N~~G~~~~~~~l~V~~~~~~~ 791 (805)
.| ...++.|.|...|+.+
T Consensus 82 ~n----~~~~~~l~V~~~p~~~ 99 (108)
T 2dm7_A 82 GQ----ERTSATLTVRALPARF 99 (108)
T ss_dssp TT----EEEEEECEEECCCSSC
T ss_pred cC----CEEEEEEEEecCCHHH
Confidence 44 7888899998766543
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=8.8e-15 Score=125.93 Aligned_cols=92 Identities=18% Similarity=0.286 Sum_probs=80.4
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEE-eeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTV-HAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
.|+.|...+.+. .+.+|+.++|.|.+. |.|.|.|+|+|||..+..+.++.+. .+++...|.|.++..+|+|.|+|.
T Consensus 12 ~p~~~~~~~~~~-~v~~G~~v~l~C~~~--g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 88 (115)
T 2cr6_A 12 RRVHIIEDLEDV-DVQEGSSATFRCRIS--PANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFE 88 (115)
T ss_dssp SCCEEEECCCEE-EEETTSCEECCCEEE--STTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEE
T ss_pred CCCeEeccCccE-EEeCCCcEEEEEEEc--CCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEE
Confidence 456888888888 999999999999999 9999999999999999988887765 345667899999999999999999
Q ss_pred EEcCCccEEEEEEEEEEEeC
Q psy2166 769 ATNKWGQAEISVNLECVVWS 788 (805)
Q Consensus 769 a~N~~G~~~~~~~l~V~~~~ 788 (805)
| |....++.|+|...|
T Consensus 89 ~----g~~~~~~~L~V~~~p 104 (115)
T 2cr6_A 89 A----GDQRASAALRVTEKP 104 (115)
T ss_dssp E----TTEECCEEEEEECCS
T ss_pred E----CCeeEEEEEEEECCC
Confidence 4 888889999998644
|
| >2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4.2e-13 Score=112.05 Aligned_cols=92 Identities=17% Similarity=0.343 Sum_probs=80.9
Q ss_pred CCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEE
Q psy2166 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRA 143 (805)
Q Consensus 64 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 143 (805)
.+|.|+..+.+.+.+.+|+.++|.|.+. .|.+.|.|+|||..+..+.++.+..++...+|.|.+++.+|+|.|+|.|
T Consensus 6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~---~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 82 (100)
T 2yuv_A 6 SGAAFAKILDPAYQVDKGGRVRFVVELA---DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA 82 (100)
T ss_dssp SSCCEEECCCSCEEECTTEEEEEEEEES---CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE
T ss_pred CCCeEEecCCCccEEcCCCcEEEEEEec---CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE
Confidence 4788887777557899999999999997 5788999999999999888999998888889999999999999999999
Q ss_pred EeCCeeEEEEEEEEEeccc
Q psy2166 144 WNLAGETFTSTTIYCSTKE 162 (805)
Q Consensus 144 ~n~~g~~~~~~~l~V~~~~ 162 (805)
|.....+.|.|..++
T Consensus 83 ----g~~~~~~~l~V~~~P 97 (100)
T 2yuv_A 83 ----GDEKCSTELFVRSGP 97 (100)
T ss_dssp ----TTEEEEEEEEECCSC
T ss_pred ----CCceEEEEEEEecCC
Confidence 667778888887654
|
| >3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ... | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-12 Score=128.77 Aligned_cols=178 Identities=15% Similarity=0.220 Sum_probs=116.2
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEECC--E---Ec--------------cCCCceEEEEeC--cEEEEEEcccCcCCc
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFHNG--K---PI--------------FHKNRVKMVSDF--GFVVMDIAYVQSHDS 374 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~g--~---~l--------------~~~~~~~~~~~~--~~~~l~i~~v~~~d~ 374 (805)
+.+|+.++|.|.+.+.......+.|+|.. . .+ ....++.+..+. ....|+|.+++.+|+
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds 91 (230)
T 3n9g_H 12 RKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRSEDT 91 (230)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred EcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCChhhC
Confidence 78999999999997322345679999731 1 11 012466665543 567899999999999
Q ss_pred eEEEEEEEeCc-----eee---EEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecce
Q psy2166 375 GEYVCRAWNKY-----GED---FTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISDV 446 (805)
Q Consensus 375 G~Y~C~a~n~~-----g~~---~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (805)
|.|.|.+.+.. +.. ...+.|.|...
T Consensus 92 G~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~----------------------------------------------- 124 (230)
T 3n9g_H 92 AVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSA----------------------------------------------- 124 (230)
T ss_dssp EEEEEEEECCCSSSTTCCEEEECCCEEEEECSS-----------------------------------------------
T ss_pred EEEEEEEccCCCCcccccccccCCCEEEEEEec-----------------------------------------------
Confidence 99999998753 111 12234544211
Q ss_pred eeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCC
Q psy2166 447 TQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDP 526 (805)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p 526 (805)
...+|.+....+... +.+|+.++|.|.+.+..++
T Consensus 125 ---------------------------------------------~~~~P~v~~~~~~~~-~~~g~~v~L~C~~~~~~P~ 158 (230)
T 3n9g_H 125 ---------------------------------------------STKGPSVFPLAPSSK-STSGGTAALGCLVKDYFPE 158 (230)
T ss_dssp ---------------------------------------------CCBCCEEEEECCCCC-CCTTCEEEEEEEEEEEBSS
T ss_pred ---------------------------------------------CCCCCEEEecCCCcc-ccCCCCEEEEEEEEeEECC
Confidence 134566654333333 5689999999999974333
Q ss_pred CcEEEEEECCEEccCCCce--EEEeeCC----EEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEe
Q psy2166 527 DLVVEWFYNGKKLPHGHRY--RTFHDFG----IVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 527 ~~~v~W~~~g~~l~~~~~~--~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
.+.++| +|..+..+... .....++ .+.|.|.....+| |.|+|.|.|..+.......|.|.
T Consensus 159 ~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~ 224 (230)
T 3n9g_H 159 PVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK 224 (230)
T ss_dssp CCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCC
T ss_pred CEEEEE--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCC
Confidence 678999 66555321100 0111111 2469999988889 99999999998887777666654
|
| >3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.6e-13 Score=110.24 Aligned_cols=84 Identities=15% Similarity=0.227 Sum_probs=71.7
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
.++.|...|.+. .+.+|+.+.|.|.+. |+|.|.+.|+|+|..+....+ + .|.|.++..+|+|.|+|.|
T Consensus 2 ~~~~i~~~p~~~-~v~~G~~~~l~C~~~--g~p~p~i~W~~~~~~~~~~~~-------~--~L~i~~v~~~d~G~Y~C~a 69 (91)
T 3bfo_A 2 SKLQICVEPTSQ-KLMPGSTLVLQCVAV--GSPIPHYQWFKNELPLTHETK-------K--LYMVPYVDLEHQGTYWCHV 69 (91)
T ss_dssp CCCEEEECCCCE-EECTTSCEEEECEEE--CSSCCEEEEEETTEECTTCCS-------S--EEEESSCCGGGCEEEEEEE
T ss_pred CceEEEECCCcc-EecCCCcEEEEEEec--cCCCCEEEEEcCCeeCCcCCC-------C--eEEECCCCHHhCEEEEEEE
Confidence 467788888888 899999999999998 999999999999998876543 2 6999999999999999999
Q ss_pred EcCCccEE-EEEEEEEE
Q psy2166 770 TNKWGQAE-ISVNLECV 785 (805)
Q Consensus 770 ~N~~G~~~-~~~~l~V~ 785 (805)
.|..|... ..+.|.|.
T Consensus 70 ~n~~g~~~s~~~~l~V~ 86 (91)
T 3bfo_A 70 YNDRDSQDSKKVEIIID 86 (91)
T ss_dssp ECSSCEEECCCEEEEEC
T ss_pred EcCCCCEEeeeEEEEEe
Confidence 99999654 44666663
|
| >3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D* | Back alignment and structure |
|---|
Probab=99.46 E-value=4.4e-13 Score=133.97 Aligned_cols=180 Identities=16% Similarity=0.203 Sum_probs=111.9
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEEC--CEe---c--------------CCCCceEEEec--CcEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKP---L--------------ELGSRFKTTAD--FGFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~---i--------------~~~~~~~~~~~--~~~~~L~I~~~~~ 133 (805)
.+.+.+|++|+|.|.+.+.......+.|+|. +.. + ...+|+.+..+ .+.++|+|.+++.
T Consensus 32 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~ 111 (256)
T 3sob_H 32 GGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRA 111 (256)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred cEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCc
Confidence 5689999999999999742233568999973 211 1 12357776654 3577899999999
Q ss_pred CCCeEEEEEEEeCCe-----------eEEEEEEEEEeccccccccccCCCCcchhhhhHhhhhhhcCCCCCCCCCCCCCC
Q psy2166 134 RDQGIYTCRAWNLAG-----------ETFTSTTIYCSTKESLIERTQHPKGEEGLEKIQDLEESLRRQPAGVPDSEDGRP 202 (805)
Q Consensus 134 ~D~G~Y~C~a~n~~g-----------~~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (805)
+|+|.|.|.+.+..+ .......|.|.... ..+
T Consensus 112 ~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~-------------------------------------~~~ 154 (256)
T 3sob_H 112 EDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSAS-------------------------------------TKG 154 (256)
T ss_dssp GGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSC-------------------------------------CBC
T ss_pred ccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCC-------------------------------------CCC
Confidence 999999999987421 11223456664311 133
Q ss_pred CceecccccccccCCCceEEEEEEEeeCCCCCeEEEEEECCEEccCCCcE--EEEEEcC----eEEEEEcCCCCcccEEE
Q psy2166 203 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI--RTVHAFG----MVVLEILGTKIEDTGVY 276 (805)
Q Consensus 203 p~~~~~~~~~~~v~~g~~~~l~C~~~~~~~p~~~i~W~k~g~~l~~~~~~--~~~~~~~----~~~L~i~~~~~~d~G~Y 276 (805)
|.+....+.. .+.+|+.++|.|.+.....+.+.+.| ++..+...... .....++ .+.|.|.....+| |.|
T Consensus 155 P~i~~~~~~~-~~~~g~~v~L~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~y 230 (256)
T 3sob_H 155 PSVFPLAPSS-KSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTY 230 (256)
T ss_dssp CEEEEECCC------TTEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCC
T ss_pred CEEEEECCCc-ccccCCcEEEEEEEEEEECCCeEEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceE
Confidence 5444322222 25689999999998643322578999 55544321100 0011111 2478899988899 999
Q ss_pred EEEEEcCCeeEEEEEEEEE
Q psy2166 277 TCRATNKWGQAEISVNLEC 295 (805)
Q Consensus 277 ~C~~~n~~g~~~~~~~l~v 295 (805)
+|.+.|..+.......+.+
T Consensus 231 tC~v~~~~~~~~~~~~~~~ 249 (256)
T 3sob_H 231 ICNVNHKPSNTKVDKKVEP 249 (256)
T ss_dssp EEEEEEGGGTEEEEEECCC
T ss_pred EEEEEeCCCCcceEEEecc
Confidence 9999998776665555543
|
| >2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.1e-14 Score=115.82 Aligned_cols=85 Identities=19% Similarity=0.349 Sum_probs=72.9
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEE
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 777 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~ 777 (805)
+.+. .+.+|+.++|.|.+. |.| |.|.|+|+|..+....++.+. ++ .|.|.++..+|+|.|+|.|.|..|...
T Consensus 10 p~~~-~v~~G~~v~L~C~~~--g~p-p~i~W~k~g~~~~~~~~~~~~--~~--~L~i~~v~~~D~G~Y~C~a~n~~g~~~ 81 (99)
T 2cr3_A 10 VESF-LVHPGDLLQLRCRLR--DDV-QSINWLRDGVQLAESNRTRIT--GE--EVEVQDSVPADSGLYACVTSSPSGSDT 81 (99)
T ss_dssp EEEC-CBCTTSCEEEECCCC--SSC-CEEEEEESSSBCCCCSSEEEC--SS--EEEETTCCTTTCEEEEEEEEETTEEEE
T ss_pred CcCe-EEeCCCcEEEEEEec--CCC-CeEEEEECCEECCCCCcEEEE--CC--EEEEccCCHHHCEEEEEEEEeCCceEE
Confidence 4455 899999999999998 877 799999999998877776654 33 799999999999999999999999999
Q ss_pred EEEEEEEEEeCCC
Q psy2166 778 ISVNLECVVWSPS 790 (805)
Q Consensus 778 ~~~~l~V~~~~~~ 790 (805)
..+.|.|...+++
T Consensus 82 ~~~~l~V~~~~~s 94 (99)
T 2cr3_A 82 TYFSVNVSDALPS 94 (99)
T ss_dssp EEEEECBCSCCSC
T ss_pred EEEEEEEecCCCC
Confidence 9988888765544
|
| >1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-13 Score=116.71 Aligned_cols=95 Identities=17% Similarity=0.273 Sum_probs=83.5
Q ss_pred CcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEE
Q psy2166 62 TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTC 141 (805)
Q Consensus 62 ~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 141 (805)
...+|.|+..+. .+.+.+|+.++|.|.+. |.|.+.|.|+|+|..+..+.++.+...+...+|.|.+++.+|+|.|+|
T Consensus 11 ~~~~~~i~~~p~-~~~v~~G~~v~L~C~~~--g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 87 (106)
T 1nct_A 11 TTLAARILTKPR-SMTVYEGESARFSCDTD--GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSV 87 (106)
T ss_dssp SSCCCEEEECCC-CEEESSSSCEECCEEEE--CSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEE
T ss_pred CCCCCEEEECCC-CEEEeCCCcEEEEEEEE--EcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEE
Confidence 345677766555 78999999999999998 688899999999999998889988887777899999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEe
Q psy2166 142 RAWNLAGETFTSTTIYCS 159 (805)
Q Consensus 142 ~a~n~~g~~~~~~~l~V~ 159 (805)
.|.|..|.....+.|.|+
T Consensus 88 ~a~N~~G~~~~~~~l~V~ 105 (106)
T 1nct_A 88 VVENSEGKQEAEFTLTIQ 105 (106)
T ss_dssp CCBCSSCBCCEEEEEEEC
T ss_pred EEEeCCCeEEEEEEEEEE
Confidence 999999998888888874
|
| >2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-13 Score=116.96 Aligned_cols=98 Identities=22% Similarity=0.366 Sum_probs=83.2
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccC-CCceEEEee-CCEEEEEEccCCCCCCEEEE
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPH-GHRYRTFHD-FGIVILDILYCYEENSGVYE 570 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~-~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~ 570 (805)
..+|.|...+.... +.+|+.++|.|.+. |.|.+.++|+|+|..+.. ..++.+..+ ++...|.|.+++.+|+|.|+
T Consensus 6 ~~~P~~~~~~~~~~-v~~G~~v~l~C~~~--g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~ 82 (110)
T 2dm2_A 6 SGAPFFEMKLKHYK-IFEGMPVTFTCRVA--GNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYT 82 (110)
T ss_dssp SCCCCBSSCCCCEE-EETTCCEEEEEEBC--CSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCE
T ss_pred CCCCEEEecCcCeE-EeCCCeEEEEEEEE--ecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEE
Confidence 46788777666554 89999999999998 788899999999999875 556666554 55668999999999999999
Q ss_pred EEEEcCCcceEEEEEEEEeeeee
Q psy2166 571 CRATNKYGSDVTKASLKCVSKTN 593 (805)
Q Consensus 571 C~a~n~~g~~~~~~~l~V~~~~~ 593 (805)
|.|.|..|.....+.|.|...+.
T Consensus 83 C~a~N~~g~~~~~~~l~V~~~~~ 105 (110)
T 2dm2_A 83 IMAANPQGRISCTGRLMVQAVNS 105 (110)
T ss_dssp EEEECTTCCEEECCCEEEECCSC
T ss_pred EEEEECCCeEEEEEEEEEECCCC
Confidence 99999999999999999987664
|
| >1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4.4e-13 Score=122.02 Aligned_cols=104 Identities=23% Similarity=0.360 Sum_probs=87.0
Q ss_pred cCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEee-CCEEEEEEccCCCCCCE
Q psy2166 489 AAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD-FGIVILDILYCYEENSG 567 (805)
Q Consensus 489 ~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-~~~~~L~i~~v~~~d~G 567 (805)
.+.+..+|.|...+.... +.+|+.++|.|.+. |.|.+.++|+|+|..+..+.++.+... ++...|.|.+++.+|+|
T Consensus 35 ~~~v~~~P~~~~~~~~~~-v~~G~~v~L~C~~~--g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 111 (154)
T 1fhg_A 35 EEKPHVKPYFTKTILDME-VVEGSAARFDCKVE--GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDA 111 (154)
T ss_dssp CCCCCEEEEEEECCCCEE-EETTSCEEEEEEEE--EESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCE
T ss_pred cccCCCCCeEEccCCcEE-EeCCCeEEEEEEEE--EecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCE
Confidence 445567888888777654 89999999999999 678889999999999988888877543 45678999999999999
Q ss_pred EEEEEEEcCCcceEEEEEEEEeeeeeee
Q psy2166 568 VYECRATNKYGSDVTKASLKCVSKTNLI 595 (805)
Q Consensus 568 ~Y~C~a~n~~g~~~~~~~l~V~~~~~~~ 595 (805)
.|+|.|.|..|.....+.|.|...+.+.
T Consensus 112 ~Y~C~a~N~~G~~~~~~~l~V~~~p~~~ 139 (154)
T 1fhg_A 112 KYTCKAVNSLGEATCTAELLVETMGKEG 139 (154)
T ss_dssp EEEEEEEETTEEEEEEEEEEEECC----
T ss_pred EEEEEEEECCCeEEEEEEEEEeCcCcCC
Confidence 9999999999999999999999877643
|
| >1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X | Back alignment and structure |
|---|
Probab=99.45 E-value=5.7e-13 Score=113.74 Aligned_cols=93 Identities=16% Similarity=0.119 Sum_probs=74.8
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeC-------CEEEEEEccCCCCCC
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDF-------GIVILDILYCYEENS 566 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~-------~~~~L~i~~v~~~d~ 566 (805)
.||+| .+.. ...+..+.|.|.+. |.|.|.|+|+|||++|..+.+..+.... ....|.|.++...|+
T Consensus 3 ~pP~I--~l~~---~~~~~~~~l~c~v~--G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~ 75 (126)
T 1he7_A 3 MPASV--QLHT---AVEMHHWCIPFSVD--GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNN 75 (126)
T ss_dssp CCCCC--CCCC---CCCCCEEEEEEEEC--CSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGC
T ss_pred CCCEE--EccC---CccCccEEEEEEEe--eeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCC
Confidence 56775 3332 34678999999999 8899999999999999887775443211 235799999999999
Q ss_pred EEEEEEEEcCCcceEEEEEEEEeeeee
Q psy2166 567 GVYECRATNKYGSDVTKASLKCVSKTN 593 (805)
Q Consensus 567 G~Y~C~a~n~~g~~~~~~~l~V~~~~~ 593 (805)
|.|+|.|.|..|....++.|.|...|.
T Consensus 76 G~YtC~A~N~~G~~~~t~~l~v~~~P~ 102 (126)
T 1he7_A 76 GNYTLLAANPFGQASASIMAAFMDNPF 102 (126)
T ss_dssp EEEEEEEEETTEEEEEEEEECCCSCTT
T ss_pred EEEEEEEEECCCeEEEEEEEEEEcCCC
Confidence 999999999999999999998876653
|
| >2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.6e-13 Score=115.29 Aligned_cols=90 Identities=14% Similarity=0.155 Sum_probs=76.1
Q ss_pred CeEEecCCCCceecCCCcEEEEEEEecCCCC-CceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEE
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDP-NLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAW 144 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p-~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 144 (805)
|.|+. .+.++.+.+|+.++|.|.+. +.| .+.+.|+|||..+..+.++.+..++..++|.|.+++.+|+|.|+|.|
T Consensus 9 ~~~~~-~~~~~~v~~G~~v~l~C~v~--~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a- 84 (104)
T 2eny_A 9 VGITK-RLKTMEVLEGESCSFECVLS--HESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSV- 84 (104)
T ss_dssp CCCSB-CCCCEEEESSCCEEEEEECS--SCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEE-
T ss_pred CEEEe-cCCCcEEcCCCcEEEEEEEc--CCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEE-
Confidence 44544 44478999999999999998 455 34799999999999999999998888889999999999999999998
Q ss_pred eCCeeEEEEEEEEEeccc
Q psy2166 145 NLAGETFTSTTIYCSTKE 162 (805)
Q Consensus 145 n~~g~~~~~~~l~V~~~~ 162 (805)
++....+.|.|..++
T Consensus 85 ---~~~~~~a~L~V~~~p 99 (104)
T 2eny_A 85 ---RGLTSKASLIVRERS 99 (104)
T ss_dssp ---TTEEEEECEEEECCC
T ss_pred ---CCeeEEEEEEEeCCC
Confidence 456678889988755
|
| >2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=7.4e-13 Score=111.21 Aligned_cols=91 Identities=13% Similarity=0.199 Sum_probs=76.6
Q ss_pred CCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCC----------ceEEEecCcEEEEEEccccc
Q psy2166 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS----------RFKTTADFGFVTLDLTEVYD 133 (805)
Q Consensus 64 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~----------~~~~~~~~~~~~L~I~~~~~ 133 (805)
++|.|+..+. +..|.+|+.++|.|.+. + .+.+.|+|||++|..+. |+.+..++..++|+|.+++.
T Consensus 7 p~~~~~~~l~-d~~v~eG~~a~f~C~vs--~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~ 81 (112)
T 2e6q_A 7 GTARLVAGLE-DVQVYDGEDAVFSLDLS--T--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKH 81 (112)
T ss_dssp SCCCEEECCC-CEEEETTCEEEEEEEES--S--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCS
T ss_pred CCcEEecCCC-CeEEcCCCcEEEEEEEC--C--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCH
Confidence 4566766665 78999999999999998 3 66899999999999887 99999888899999999999
Q ss_pred CCCeEEEEEEEeCCeeEEEEEEEEEeccc
Q psy2166 134 RDQGIYTCRAWNLAGETFTSTTIYCSTKE 162 (805)
Q Consensus 134 ~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 162 (805)
+|+|.|+|..-+ ...+++.|+|..+|
T Consensus 82 ~D~G~Y~~~~~~---~~~ssA~L~V~~~p 107 (112)
T 2e6q_A 82 QDSGALVGFSCP---GVQDSAALTIQESS 107 (112)
T ss_dssp TTCSEEEEEEET---TEEEEEEEEEECSS
T ss_pred HHCccEEEEEEC---CeeEEEEEEEeCCC
Confidence 999999774433 44578899998765
|
| >2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-13 Score=113.32 Aligned_cols=95 Identities=23% Similarity=0.319 Sum_probs=78.7
Q ss_pred CCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccC-CCceEEEeeCCEEEEEEccCCCCCCEEEE
Q psy2166 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPH-GHRYRTFHDFGIVILDILYCYEENSGVYE 570 (805)
Q Consensus 492 ~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 570 (805)
...+|.|...+.... +.+|+.++|.|.+. |.|.+.+.|+|+|..+.. ..++.+..++ .|.|.+++.+|+|.|+
T Consensus 5 ~~~~P~i~~~p~~~~-v~~G~~~~l~C~~~--g~p~p~v~W~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~d~G~Y~ 78 (100)
T 2edj_A 5 SSGPPIILQGPANQT-LAVDGTALLKCKAT--GDPLPVISWLKEGFTFPGRDPRATIQEQG---TLQIKNLRISDTGTYT 78 (100)
T ss_dssp CCSSCEEEECCCCEE-EESSSEEEECCEEE--CSSCCEEEEEESSSEESSSCSSCEECTTC---CEEEESCCTTTCCEEE
T ss_pred CCCCCEEEeCcCCEE-EcCCCcEEEEEEEE--EcCCCEEEEEECCEECCCCCCCEEEcCCC---EEEEccCCcccCEEEE
Confidence 356788887766654 89999999999999 788899999999998873 4455443333 4999999999999999
Q ss_pred EEEEcCCcceEEEEEEEEeeee
Q psy2166 571 CRATNKYGSDVTKASLKCVSKT 592 (805)
Q Consensus 571 C~a~n~~g~~~~~~~l~V~~~~ 592 (805)
|.|.|..|.....+.|.|..++
T Consensus 79 C~a~n~~g~~~~~~~l~V~~~~ 100 (100)
T 2edj_A 79 CVATSSSGETSWSAVLDVTESG 100 (100)
T ss_dssp EEEECSSCCCBCCEEEEEESCC
T ss_pred EEEEcCCCCEEEEEEEEEecCC
Confidence 9999999999999999987653
|
| >2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-13 Score=115.86 Aligned_cols=95 Identities=14% Similarity=0.105 Sum_probs=75.0
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecC-CCCCceEEEEECCEe-cC--CCCceEEEec--C----cEEEEEEcccccC
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPK-NDPNLKIEWIFNGKP-LE--LGSRFKTTAD--F----GFVTLDLTEVYDR 134 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~-~~p~~~v~W~k~g~~-i~--~~~~~~~~~~--~----~~~~L~I~~~~~~ 134 (805)
.|.|+..+. ++.|.+|+.++|.|.+.+. +.|.|.|+|||++.. +. .+.++.+... . ..++|+|.+++.+
T Consensus 7 ~~~F~~~P~-~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 85 (126)
T 2dav_A 7 GILFIEKPQ-GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDN 85 (126)
T ss_dssp SCSCCSCCC-CCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred ccEEEEcCC-CeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcc
Confidence 366766664 7899999999999999843 348999999997521 11 2456665422 1 2578999999999
Q ss_pred CCeEEEEEEEeCCeeEEEEEEEEEec
Q psy2166 135 DQGIYTCRAWNLAGETFTSTTIYCST 160 (805)
Q Consensus 135 D~G~Y~C~a~n~~g~~~~~~~l~V~~ 160 (805)
|+|.|+|.|.|..|..+..+.|+|..
T Consensus 86 DaG~Y~Cevsn~~g~~~~~~~L~V~~ 111 (126)
T 2dav_A 86 FAGNYRCEVTYKDKFDSCSFDLEVHE 111 (126)
T ss_dssp SCEEEEEEEECSSCEEEECCEEEEEC
T ss_pred cCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence 99999999999999999999999987
|
| >2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=9e-13 Score=112.98 Aligned_cols=91 Identities=13% Similarity=0.119 Sum_probs=76.6
Q ss_pred CCCeeeecCCc---ccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEE
Q psy2166 690 RPPQFTSEFQH---LSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYT 766 (805)
Q Consensus 690 ~~P~~~~~~~~---~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 766 (805)
.||.+...+.+ . .+.+|+.+.|.|.+ +.|.+.+.|+|+|+.+..+.++.+..++....|.|.++..+|+|.|+
T Consensus 9 ~pp~~~~~p~~~~~~-~~~~G~~v~L~C~~---~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 84 (113)
T 2cpc_A 9 DVSSWIVYPSGKVYV-AAVRLERVVLTCEL---CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYL 84 (113)
T ss_dssp SCSCSEEESCSCEEE-EEETTCCEEEEEEE---SCTTCCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEE
T ss_pred cCCcEEEccCCceeE-EEEcCCeEEEEEEe---cCCCCeEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEE
Confidence 45655555554 4 78899999999998 46889999999999999989998887777789999999999999999
Q ss_pred EEEEcCCccEEEEEEEEEEEeC
Q psy2166 767 CRATNKWGQAEISVNLECVVWS 788 (805)
Q Consensus 767 C~a~N~~G~~~~~~~l~V~~~~ 788 (805)
|.|.| .+.++.|.|...|
T Consensus 85 C~a~n----~~~~~~l~V~~~p 102 (113)
T 2cpc_A 85 CEIDD----ESASFTVTVTEPP 102 (113)
T ss_dssp EESSS----CEEEEEEEEECCC
T ss_pred EEEec----CcEEEEEEEecCC
Confidence 99999 5677888886533
|
| >2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-12 Score=110.65 Aligned_cols=99 Identities=24% Similarity=0.290 Sum_probs=83.4
Q ss_pred cccCCCC-CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCC
Q psy2166 487 AQAAPVA-EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEEN 565 (805)
Q Consensus 487 ~~~~~~~-~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d 565 (805)
...+.+. .||.|...+.+.. +.+|++++|.|.+. +. |.++|+|+|..+..+.++.+..++....|.|.+++.+|
T Consensus 10 ~~~l~V~~~pp~~~~~~~~~~-v~~G~~v~l~C~~~--~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D 84 (113)
T 2edh_A 10 SAMLTVRALPIKFTEGLRNEE-ATEGATAVLRCELS--KM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAED 84 (113)
T ss_dssp CCCCCCCCSCCCEEECCCCCE-ECTTSCEEEEEEES--SC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTT
T ss_pred EEEEEEEcCCCcccccCCceE-EeCCCeEEEEEEEC--CC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhh
Confidence 3344455 4568877766654 99999999999997 54 57999999999998889999888888899999999999
Q ss_pred CEEEEEEEEcCCcceEEEEEEEEeeeeee
Q psy2166 566 SGVYECRATNKYGSDVTKASLKCVSKTNL 594 (805)
Q Consensus 566 ~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~ 594 (805)
+|.|+|.| |.....+.|.|...|..
T Consensus 85 ~G~Y~C~a----~~~~~~~~l~V~~~p~~ 109 (113)
T 2edh_A 85 AGEYLCMC----GKERTSAMLTVRAMPSG 109 (113)
T ss_dssp CEEEEEEE----TTEEEEEEEEECCCCCS
T ss_pred CEEEEEEe----CCCCEEEEEEEeCCCCC
Confidence 99999999 88888999999887754
|
| >1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X | Back alignment and structure |
|---|
Probab=99.42 E-value=7.6e-13 Score=110.90 Aligned_cols=95 Identities=21% Similarity=0.242 Sum_probs=74.6
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEE--EeeC---CEEEEEEccCCCCCCE
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT--FHDF---GIVILDILYCYEENSG 567 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~--~~~~---~~~~L~i~~v~~~d~G 567 (805)
..||++.. +.. ...|..+.|.|.+. |.|.|.++|+|||+.|..+.+... ...+ ....|.|.++..+|+|
T Consensus 2 ~~pP~i~~-~~~---~~~~~~~~~~c~v~--G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 75 (103)
T 1wwb_X 2 HFAPTITF-LES---PTSDHHWCIPFTVK--GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNG 75 (103)
T ss_dssp CCCCCCCC-CCC---CCCCCEEEEEEEEE--CSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCE
T ss_pred CCCCEEEe-ccC---ceECcEEEEEEEEE--EeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCE
Confidence 45666532 111 34688999999999 889999999999999987765422 2111 1345999999999999
Q ss_pred EEEEEEEcCCcceEEEEEEEEeeeee
Q psy2166 568 VYECRATNKYGSDVTKASLKCVSKTN 593 (805)
Q Consensus 568 ~Y~C~a~n~~g~~~~~~~l~V~~~~~ 593 (805)
.|+|.|.|..|....++.|.|...|.
T Consensus 76 ~Y~C~A~N~~G~~~~~~~l~V~~~P~ 101 (103)
T 1wwb_X 76 DYTLIAKNEYGKDEKQISAHFMGWPG 101 (103)
T ss_dssp EEEEEEECSSCEEEEEEEECCSCCCC
T ss_pred EEEEEEEeCCCcEeEEEEEEECCCCC
Confidence 99999999999999999999887654
|
| >1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.42 E-value=7.4e-13 Score=111.23 Aligned_cols=91 Identities=14% Similarity=0.218 Sum_probs=75.4
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCC--ceEEEecCcEEEEEEcccccCCCeEEEEE
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS--RFKTTADFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~--~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
+|..+...+.++.+.+|+.++|.|.+. + |.+.|.|+|||..+..+. +|.+..++...+|.|.+++.+|+|.|+|.
T Consensus 6 ~p~~~~~~~~~~~v~~G~~v~l~C~~~--~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 82 (103)
T 1x44_A 6 SGIMVTKQLEDTTAYCGERVELECEVS--E-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVM 82 (103)
T ss_dssp SSCCCSBCCCCEEEETTEEEEEEEECS--S-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEE
T ss_pred CCceeeccCCCEEEECCCCEEEEEEec--C-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEE
Confidence 454333444478999999999999997 4 668999999999998887 78998888888999999999999999999
Q ss_pred EEeCCeeEEEEEEEEEeccc
Q psy2166 143 AWNLAGETFTSTTIYCSTKE 162 (805)
Q Consensus 143 a~n~~g~~~~~~~l~V~~~~ 162 (805)
|.| ....+.|.|..++
T Consensus 83 a~n----~~~~~~l~V~~~p 98 (103)
T 1x44_A 83 TTG----GQSSAKLSVDLKS 98 (103)
T ss_dssp ETT----EEEEEEEEEECCC
T ss_pred ECC----CcEEEEEEEeCCC
Confidence 976 4667778887654
|
| >2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.1e-13 Score=112.69 Aligned_cols=94 Identities=23% Similarity=0.402 Sum_probs=78.0
Q ss_pred CCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEE
Q psy2166 490 APVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVY 569 (805)
Q Consensus 490 ~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 569 (805)
..+..+|.|...+.... +.+|++++|.|.+. |.|.|.+.|+|+|..+...... ...+...|.|.++..+|+|.|
T Consensus 6 ~~~~~~P~~~~~~~~~~-v~~G~~v~l~C~~~--g~p~p~v~W~~~g~~~~~~~~~---~~~~~~~L~i~~v~~~D~G~Y 79 (99)
T 2yr3_A 6 SGMEVAPSFSSVLKDCA-VIEGQDFVLQCSVR--GTPVPRITWLLNGQPIQYARST---CEAGVAELHIQDALPEDHGTY 79 (99)
T ss_dssp SCCCEEEEEEECCCCEE-ECTTCCEEEECEEE--EESCCCCEEEESSSBCSSCCCE---EETTEEEEEECSCCTTCCBCE
T ss_pred CCcccCCceeecCCCCE-EeCCCeEEEEEEEe--eeCCCeEEEEECCEECcccceE---eeCCeEEEEECCCChhhCEEE
Confidence 34567888888776654 89999999999998 6688899999999988765432 234556799999999999999
Q ss_pred EEEEEcCCcceEEEEEEEEe
Q psy2166 570 ECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 570 ~C~a~n~~g~~~~~~~l~V~ 589 (805)
+|.|.|..|.....+.|.|.
T Consensus 80 ~C~a~N~~g~~~~~~~l~V~ 99 (99)
T 2yr3_A 80 TCLAENALGQVSCSAWVTVH 99 (99)
T ss_dssp EEEEECSSCEEEEECCEEEC
T ss_pred EEEEEECCCeEEEEEEEEEC
Confidence 99999999999888888773
|
| >3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=9.5e-13 Score=112.66 Aligned_cols=94 Identities=17% Similarity=0.292 Sum_probs=75.0
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEE-E--ee-----CcEEEEEEcCCCCCC
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT-V--HA-----FGMVVLEILGTKIED 761 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~-~--~~-----~~~~~L~i~~v~~~d 761 (805)
.+|.|...+.+. .+.+|+.++|.|.+.+.+.|.+.+.|+|+|..+........ . .. .....|.|.+++.+|
T Consensus 9 ~~P~i~~~p~~~-~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 87 (112)
T 3so5_A 9 PXPQITVQPETQ-SAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTS 87 (112)
T ss_dssp CSCEEEECCCCE-EECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGG
T ss_pred CCCeEEeCCCCc-EEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEecccccc
Confidence 689999999988 99999999999999843445689999999998876432111 0 00 013589999999999
Q ss_pred CEEEEEEEEcCCcc-EEEEEEEEE
Q psy2166 762 TGVYTCRATNKWGQ-AEISVNLEC 784 (805)
Q Consensus 762 ~G~Y~C~a~N~~G~-~~~~~~l~V 784 (805)
+|.|+|.|.|..|. .+..+.|.|
T Consensus 88 ~G~Y~C~a~n~~g~~~s~~~~l~V 111 (112)
T 3so5_A 88 EGXYQCVISNHFGSSYSVXAXLTI 111 (112)
T ss_dssp CEEEEEEEEETTEEEECCCEEEEE
T ss_pred CCeEEEEEEeCCCcEEEeEEEEEe
Confidence 99999999999998 557888877
|
| >3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0 | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-13 Score=116.11 Aligned_cols=99 Identities=18% Similarity=0.257 Sum_probs=71.1
Q ss_pred CCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEE
Q psy2166 490 APVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVY 569 (805)
Q Consensus 490 ~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 569 (805)
+.+..+|.|...+.... +.+|+.++|.|.+. |.|.+.+.|+|+|..+....++.....+. .|.|.+++.+|+|.|
T Consensus 5 v~~~~~P~~~~~~~~~~-v~~G~~v~l~C~~~--g~p~p~i~W~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y 79 (108)
T 3kvq_A 5 VLERVAPTITGNLENQT-TSIGESIEVSCTAS--GNPPPQIMWFKDNETLVEDSGIVLKDGNR--NLTIRRVRKEDEGLY 79 (108)
T ss_dssp ------CCCBSCCCCEE-EETTCCEEEECBCC------CCEEEEESSSBCCCBTTEEEETTTT--EEEECSCCGGGCEEE
T ss_pred ECccCCCceecCCCCeE-EeCCCeEEEEEECc--CcCCCeEEEEECCeEcccCCCeEEeCCCc--EEEEeecCcccCEEE
Confidence 34467888887766654 89999999999998 77888999999999998776666544433 599999999999999
Q ss_pred EEEEEcCCcceEEEEEEEEeeeee
Q psy2166 570 ECRATNKYGSDVTKASLKCVSKTN 593 (805)
Q Consensus 570 ~C~a~n~~g~~~~~~~l~V~~~~~ 593 (805)
+|.|.|..|.....+.|.|..++.
T Consensus 80 ~C~a~n~~g~~~~~~~l~V~~~~~ 103 (108)
T 3kvq_A 80 TCQACSVLGCAKVEAFFIIEGAQE 103 (108)
T ss_dssp EEEEC----CEEEEEEEEEEC---
T ss_pred EEEEEeCCCceEEEEEEEEeCCCc
Confidence 999999999999999999987664
|
| >3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.41 E-value=8.1e-13 Score=112.25 Aligned_cols=94 Identities=15% Similarity=0.205 Sum_probs=75.6
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCE-Ec-------cCCCCeEEEee-CcEEEEEEcCCCCC
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGK-PI-------EASHRIRTVHA-FGMVVLEILGTKIE 760 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~-~l-------~~~~~~~~~~~-~~~~~L~i~~v~~~ 760 (805)
.+|.|...+.+. .+.+|++++|.|.+. +.|.+.+.|+|++. .+ ....++.+... .+...|.|.+++.+
T Consensus 5 ~~p~~~~~~~~~-~v~~G~~v~L~C~~~--~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~ 81 (108)
T 3m45_A 5 GSQGQFPLTQNV-TVVEGGTAILTCRVD--QNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLS 81 (108)
T ss_dssp ---CCCEECCCE-EEETTSCEEEEEEES--SCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGG
T ss_pred cCCCccccCCee-EEEeCCcEEEEeEEc--CCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChh
Confidence 467778888888 999999999999998 88999999999774 22 22346665332 34678999999999
Q ss_pred CCEEEEEEEEcCCccEEEEEEEEEEEe
Q psy2166 761 DTGVYTCRATNKWGQAEISVNLECVVW 787 (805)
Q Consensus 761 d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 787 (805)
|+|.|+|.|.| .|..+..+.|.|.+.
T Consensus 82 D~G~Y~C~~~n-~~~~~~~~~L~V~~~ 107 (108)
T 3m45_A 82 DEGQYTCSLFT-MPVKTSKAYLTVLGV 107 (108)
T ss_dssp GCEEEEEEECS-SSCEEEEEEEEEECC
T ss_pred HCeEEEEEEEc-CCCcEEEEEEEEEcC
Confidence 99999999999 899999999999753
|
| >2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.3e-13 Score=115.28 Aligned_cols=97 Identities=16% Similarity=0.271 Sum_probs=79.2
Q ss_pred CCcCCC-eEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEE-ecCcEEEEEEcccccCCCeE
Q psy2166 61 ETFAKP-VFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTT-ADFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 61 ~~~~~p-~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~-~~~~~~~L~I~~~~~~D~G~ 138 (805)
.+..+| .|...+ .++.+.+|+.++|.|.+. +.|.+.|.|+|||..+..+.++.+. .+++.++|.|.+++.+|+|.
T Consensus 8 ~V~~~p~~~~~~~-~~~~v~~G~~v~l~C~~~--g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~ 84 (115)
T 2cr6_A 8 LVQGRRVHIIEDL-EDVDVQEGSSATFRCRIS--PANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGT 84 (115)
T ss_dssp CCCSSCCEEEECC-CEEEEETTSCEECCCEEE--STTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEE
T ss_pred EEcCCCCeEeccC-ccEEEeCCCcEEEEEEEc--CCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEE
Confidence 334444 454444 578999999999999999 6888899999999999988888776 34666789999999999999
Q ss_pred EEEEEEeCCeeEEEEEEEEEeccccc
Q psy2166 139 YTCRAWNLAGETFTSTTIYCSTKESL 164 (805)
Q Consensus 139 Y~C~a~n~~g~~~~~~~l~V~~~~~~ 164 (805)
|+|.+ |.....+.|.|..++.+
T Consensus 85 Y~C~~----g~~~~~~~L~V~~~p~~ 106 (115)
T 2cr6_A 85 IYFEA----GDQRASAALRVTEKPSV 106 (115)
T ss_dssp EEEEE----TTEECCEEEEEECCSSC
T ss_pred EEEEE----CCeeEEEEEEEECCCce
Confidence 99995 67777889999877654
|
| >2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=108.25 Aligned_cols=87 Identities=18% Similarity=0.307 Sum_probs=73.1
Q ss_pred CCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEE
Q psy2166 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRA 143 (805)
Q Consensus 64 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 143 (805)
.+|.|... +..+.+.+|+.++|.|.+. +.| +.|.|+|||..+..+.++.+.. + +|.|.+++.+|+|.|+|.|
T Consensus 8 ~pp~~~~~-~~~~~v~~G~~v~l~C~~~--g~p-p~i~W~k~g~~~~~~~~~~~~~--~--~L~i~~~~~~D~G~Y~C~a 79 (95)
T 2ckn_A 8 QPWGVPVE-VESLLVHPGDLLQLRCRLR--DDV-QSINWLRDGVQLVESNRTRITG--E--EVEVRDSIPADSGLYACVT 79 (95)
T ss_dssp CSCCBTTB-BCCEEECTTSCEEEECCEE--SSC-CEEEEEBTTBCCCCCSSEEECS--S--EEEESSCCGGGSEEEEEEE
T ss_pred CCCEEEcC-cceEEEcCCCeEEEEEECC--CCC-CceEEEECCEecCCCCCEEEeC--C--EEEECCCChHHCEEEEEEe
Confidence 34555444 4478999999999999998 566 7999999999998888877652 2 8999999999999999999
Q ss_pred EeCCeeEEEEEEEEE
Q psy2166 144 WNLAGETFTSTTIYC 158 (805)
Q Consensus 144 ~n~~g~~~~~~~l~V 158 (805)
.|..|.......|.|
T Consensus 80 ~n~~g~~~~~~~l~V 94 (95)
T 2ckn_A 80 SSPSGSDTTYFSVNV 94 (95)
T ss_dssp EETTEEEEEEEEEEE
T ss_pred ccCCCcEEEEEEEEE
Confidence 999999888887776
|
| >3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H | Back alignment and structure |
|---|
Probab=99.40 E-value=3.5e-12 Score=124.63 Aligned_cols=175 Identities=17% Similarity=0.255 Sum_probs=110.1
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEECC--E---Ec--------------cCCCceEEEEeC--cEEEEEEcccCcCCc
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFHNG--K---PI--------------FHKNRVKMVSDF--GFVVMDIAYVQSHDS 374 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~g--~---~l--------------~~~~~~~~~~~~--~~~~l~i~~v~~~d~ 374 (805)
+.+|+.++|.|.+.+...+...+.|+|.. . .+ ....|+.+..+. ....|+|.+++.+|+
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds 91 (226)
T 3mlr_H 12 KQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQASDT 91 (226)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCGGGC
T ss_pred EecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCcccC
Confidence 78999999999997322345689999832 1 11 012466665543 567899999999999
Q ss_pred eEEEEEEEeCce-------eeE--EEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeeecc
Q psy2166 375 GEYVCRAWNKYG-------EDF--TRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQISD 445 (805)
Q Consensus 375 G~Y~C~a~n~~g-------~~~--~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (805)
|.|.|.+.+..+ ... ....|.|..
T Consensus 92 G~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~----------------------------------------------- 124 (226)
T 3mlr_H 92 GKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSS----------------------------------------------- 124 (226)
T ss_dssp EEEEEEEEEEEESSSEEEEEEEECCCEEEEECC-----------------------------------------------
T ss_pred EEEEEeEccCCCcccccchhhhhCCccEEeecc-----------------------------------------------
Confidence 999999976431 000 112344321
Q ss_pred eeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCC
Q psy2166 446 VTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTD 525 (805)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~ 525 (805)
....+|.+....+... +.+|+.++|.|.+.+..+
T Consensus 125 ---------------------------------------------~~~~~P~i~~~~~~~~-~~~g~~~~l~C~~~~~~p 158 (226)
T 3mlr_H 125 ---------------------------------------------GTTKGPSVFPLAPSSK-STSGGTAALGCLVKDYFP 158 (226)
T ss_dssp ---------------------------------------------CCCBCCEEEEEEEEEC-STTSSEEEEEEEEEEEBS
T ss_pred ---------------------------------------------CCCCCCcEEEecCccc-ccCCCCEEEEEEEEEEEC
Confidence 1134566654333322 568999999999997433
Q ss_pred CCcEEEEEECCEEccCCCce--EEEeeCC----EEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEE
Q psy2166 526 PDLVVEWFYNGKKLPHGHRY--RTFHDFG----IVILDILYCYEENSGVYECRATNKYGSDVTKASL 586 (805)
Q Consensus 526 p~~~v~W~~~g~~l~~~~~~--~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l 586 (805)
+.+.++| ++..+..+... .....++ .+.|.|.....+| |.|+|.|.|..+.......|
T Consensus 159 ~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~ 222 (226)
T 3mlr_H 159 EPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKV 222 (226)
T ss_dssp SCCEEEE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEEC
T ss_pred CCeEEEE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeEEEc
Confidence 3679999 55433211000 0111111 2368999988889 99999999988776544443
|
| >1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 | Back alignment and structure |
|---|
Probab=99.40 E-value=1e-12 Score=110.14 Aligned_cols=92 Identities=18% Similarity=0.421 Sum_probs=77.9
Q ss_pred CCcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCC-CceEEEecCcEEEEEEcccccCCCeEE
Q psy2166 61 ETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG-SRFKTTADFGFVTLDLTEVYDRDQGIY 139 (805)
Q Consensus 61 ~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y 139 (805)
....+|.|+..++..+.+.+|+.++|.|.+. .|.+.|.|+|||..+..+ .++.+..++..++|.|.+++.+|+|.|
T Consensus 11 ~~~~~p~f~~~~~~~~~v~~G~~v~L~C~~~---~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 87 (104)
T 1pd6_A 11 DEKKSTAFQKKLEPAYQVSKGHKIRLTVELA---DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAY 87 (104)
T ss_dssp CCSTTSSCSEECCSEEEEETTSCEEEEEECS---SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEE
T ss_pred CccCCCEEEEcCCCcEEEecCCCEEEEEEEc---CCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEE
Confidence 3456788888887668999999999999984 777889999999999887 789988888888999999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEEe
Q psy2166 140 TCRAWNLAGETFTSTTIYCS 159 (805)
Q Consensus 140 ~C~a~n~~g~~~~~~~l~V~ 159 (805)
+|.| +.....+.|.|.
T Consensus 88 ~C~a----~~~~~~~~l~V~ 103 (104)
T 1pd6_A 88 QCVV----GGEKCSTELFVK 103 (104)
T ss_dssp EEEE----TTEEECCEEEEE
T ss_pred EEEE----CCCcEEEEEEEe
Confidence 9999 445556666664
|
| >2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-13 Score=112.37 Aligned_cols=87 Identities=16% Similarity=0.234 Sum_probs=74.5
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
.+|.|...+.+. .+.+|+.++|.|.+. |.|.+.|.|+|+|..+..... ..|.|.++..+|+|.|+|.|
T Consensus 9 ~~~~i~~~p~~~-~v~~G~~v~l~C~~~--g~p~~~v~W~k~~~~~~~~~~---------~~L~i~~v~~~d~G~Y~C~a 76 (96)
T 2ens_A 9 EEVQLVVEPEGG-AVAPGGTVTLTCEVP--AQPSPQIHWMKDGVPLPLPPS---------PVLILPEIGPQDQGTYSCVA 76 (96)
T ss_dssp CSCCCEEESTTS-EECTTCEEEEECCCS--SCSSCCCCCEESSSBCSSCCC---------SEEEEESCCTTTCEEEECEE
T ss_pred CCCEEEECCCCC-EEcCCCeEEEEEEEc--cCCCCEEEEEECCEECcCCCC---------CEEEECCCCcccCEEEEEEE
Confidence 578888888888 899999999999998 999999999999998875432 26999999999999999999
Q ss_pred EcCCccEEEEEEEEEEEeC
Q psy2166 770 TNKWGQAEISVNLECVVWS 788 (805)
Q Consensus 770 ~N~~G~~~~~~~l~V~~~~ 788 (805)
.|..|....+..+.|.+..
T Consensus 77 ~n~~~~~~~s~~~~v~V~~ 95 (96)
T 2ens_A 77 THSSHGPQESRAVSISIIE 95 (96)
T ss_dssp CCSSCCCEECCCEEEEECC
T ss_pred EeCCCCcEEEEEEEEEEeC
Confidence 9988877677667666543
|
| >2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-13 Score=116.92 Aligned_cols=93 Identities=28% Similarity=0.407 Sum_probs=72.4
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCC-----CeEEEeeCcEEEEEEc--CCCCCCC
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH-----RIRTVHAFGMVVLEIL--GTKIEDT 762 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~-----~~~~~~~~~~~~L~i~--~v~~~d~ 762 (805)
.||.|...+.+. .+.+|+.+.|.|.+. |.|.|.|+|+|+|..+.... +.....++....|.|. ++..+|+
T Consensus 8 ~pP~i~~~p~~~-~v~~G~~v~L~C~~~--g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~ 84 (117)
T 2v9t_A 8 FPPRIVEHPSDL-IVSKGEPATLNCKAE--GRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDE 84 (117)
T ss_dssp EEEEEEECCCCE-EECTTCCEEECCEEE--EESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSC
T ss_pred CCCeeEcCCCCE-EEcCCCcEEEEEECC--ccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcC
Confidence 688999988888 999999999999998 99999999999999887653 2222333433333333 6789999
Q ss_pred EEEEEEEEcCCccEEE-EEEEEEE
Q psy2166 763 GVYTCRATNKWGQAEI-SVNLECV 785 (805)
Q Consensus 763 G~Y~C~a~N~~G~~~~-~~~l~V~ 785 (805)
|.|+|.|.|.+|.... .++|.|.
T Consensus 85 G~Y~C~a~N~~G~~~s~~~~l~~~ 108 (117)
T 2v9t_A 85 GVYVCVARNYLGEAVSHDASLEVA 108 (117)
T ss_dssp EEEEEEEEETTEEEECCCEEEEEC
T ss_pred EEEEEEEEeCccceEeeeEEEEhh
Confidence 9999999999997654 4556654
|
| >2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=7.3e-13 Score=111.33 Aligned_cols=93 Identities=18% Similarity=0.347 Sum_probs=80.4
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEE
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECR 572 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 572 (805)
..||.|...+.+.. +.+|++++|.|.+. + |.+.+.|+|+|+.+..+.++.+..++....|.|.+++.+|+|.|+|.
T Consensus 6 ~~pp~~~~~~~~~~-v~~G~~v~l~C~~~--~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (103)
T 2edf_A 6 SGPAAIIKPLEDQW-VAPGEDVELRCELS--R-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCE 81 (103)
T ss_dssp CCCCCEEECCCCEE-ECTTSCEEECCEES--S-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEE
T ss_pred CCCcEEEecCCccE-EcCCCCEEEEEEEe--C-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEE
Confidence 46677777766654 99999999999998 5 67789999999999888899888888888999999999999999999
Q ss_pred EEcCCcceEEEEEEEEeeeee
Q psy2166 573 ATNKYGSDVTKASLKCVSKTN 593 (805)
Q Consensus 573 a~n~~g~~~~~~~l~V~~~~~ 593 (805)
|.| ....+.|.|..++.
T Consensus 82 a~n----~~~~~~l~V~~~p~ 98 (103)
T 2edf_A 82 VEA----SKSTASLHVEEKAS 98 (103)
T ss_dssp CSS----CEEEEEEEECCCSS
T ss_pred Ecc----CCcEEEEEEeCCCC
Confidence 998 46778888887665
|
| >2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.4e-13 Score=116.01 Aligned_cols=98 Identities=22% Similarity=0.414 Sum_probs=83.1
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEE-EeeCCEEEEEEccCCCCCCEEEEE
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT-FHDFGIVILDILYCYEENSGVYEC 571 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C 571 (805)
..+|.|...+.... +.+|+.++|.|.+. +.|.+.+.|+|+|..+....+... ...++...|.|.+++.+|+|.|+|
T Consensus 7 ~~~P~i~~~~~~~~-v~~G~~v~l~C~~~--g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 83 (110)
T 2dm3_A 7 GFRPHFLQAPGDLT-VQEGKLCRMDCKVS--GLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTC 83 (110)
T ss_dssp CCCCEEEECCCEEE-EESSSCBCCEEEEE--CSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCE
T ss_pred CCCCcEEeCCCcEE-EeCCCEEEEEEEEE--EcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEE
Confidence 46888888766654 89999999999999 788899999999999876655544 334456789999999999999999
Q ss_pred EEEcCCcceEEEEEEEEeeeee
Q psy2166 572 RATNKYGSDVTKASLKCVSKTN 593 (805)
Q Consensus 572 ~a~n~~g~~~~~~~l~V~~~~~ 593 (805)
.|.|..|.....+.|.|..++.
T Consensus 84 ~a~n~~g~~~~~~~l~V~~~p~ 105 (110)
T 2dm3_A 84 IATNRAGQNSFSLELVVAAKES 105 (110)
T ss_dssp EEECSSCEEEECCEEEEECCCC
T ss_pred EEECCCCEEEEEEEEEEeCCCC
Confidence 9999999999999999988765
|
| >2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=4.6e-13 Score=112.04 Aligned_cols=90 Identities=17% Similarity=0.291 Sum_probs=74.6
Q ss_pred CCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCC----ceEEEecCcEEEEEEcccccCCCeEE
Q psy2166 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS----RFKTTADFGFVTLDLTEVYDRDQGIY 139 (805)
Q Consensus 64 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~----~~~~~~~~~~~~L~I~~~~~~D~G~Y 139 (805)
.+|.|...+. ++.+.+|+.++|.|.+. +.| +.|.|+|||..+..+. +|.+..++...+|.|.+++.+|+|.|
T Consensus 7 ~p~~~~~~~~-~~~v~~G~~v~l~C~~~--~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y 82 (101)
T 2edk_A 7 GPVLIVTPLE-DQQVFVGDRVEMAVEVS--EEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRY 82 (101)
T ss_dssp CCCCEEECCC-CEEEESSCCCBCCEEES--CSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBE
T ss_pred CCCEEEecCC-ceEEcCCCCEEEEEEEe--CCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEE
Confidence 4566665554 68999999999999998 566 8999999999998776 77888888888999999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEEecc
Q psy2166 140 TCRAWNLAGETFTSTTIYCSTK 161 (805)
Q Consensus 140 ~C~a~n~~g~~~~~~~l~V~~~ 161 (805)
+|.|.| ....+.|.|..+
T Consensus 83 ~C~a~n----~~~~~~l~V~~~ 100 (101)
T 2edk_A 83 QVITNG----GQCEAELIVEEK 100 (101)
T ss_dssp EEECSS----CEECCBEEEECC
T ss_pred EEEEcC----CcEEEEEEEeCC
Confidence 999976 345566777643
|
| >3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.9e-12 Score=127.06 Aligned_cols=178 Identities=13% Similarity=0.176 Sum_probs=111.7
Q ss_pred ccCCCeEEEEEEEeecCCCCcEEEEEEC--CE---Ec--------------cCCCceEEEEe--CcEEEEEEcccCcCCc
Q psy2166 316 LKDGDSAHFECTLTPVNDPELKVEWFHN--GK---PI--------------FHKNRVKMVSD--FGFVVMDIAYVQSHDS 374 (805)
Q Consensus 316 ~~~g~~~~l~C~~~~~~~p~~~v~W~~~--g~---~l--------------~~~~~~~~~~~--~~~~~l~i~~v~~~d~ 374 (805)
+.+|++++|.|.+.+.......+.|+|. +. .+ ....|+.+..+ .+...|+|.+++.+|+
T Consensus 35 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Ds 114 (256)
T 3sob_H 35 VQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRAEDT 114 (256)
T ss_dssp ECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred EcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCcccC
Confidence 7899999999999732223568999973 11 11 01246666554 3567899999999999
Q ss_pred eEEEEEEEeCce---------e--eEEEEEEEEEecccccccCCChhHHHHHHHhhhccCCCCccccCcccCCCceeeee
Q psy2166 375 GEYVCRAWNKYG---------E--DFTRATIKCFGKGGVYLDSLQPESLARIRELENAQGQQPVAQAAPVAEAPKFITQI 443 (805)
Q Consensus 375 G~Y~C~a~n~~g---------~--~~~~~~l~V~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (805)
|.|.|.+.+..+ . ......|.|..
T Consensus 115 G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~--------------------------------------------- 149 (256)
T 3sob_H 115 AVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSS--------------------------------------------- 149 (256)
T ss_dssp EEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECS---------------------------------------------
T ss_pred EEEEEEEecCCCccccccccceeEECCCEEEEEec---------------------------------------------
Confidence 999999986431 1 11223444421
Q ss_pred cceeeecCCceEEEEEEEeccCCCCceEEEeecccCCCCCCcccccCCCCCCCceEecCCCcccccCCCeEEEEEEEeeC
Q psy2166 444 SDVTQLKEGQSAHFEARLTPVTDPDLVCELFSNFFPSQGQQPVAQAAPVAEAPKFITQISDVTQLKEGQSAHFEARLTPV 523 (805)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~ 523 (805)
....+|.+....+... +.+|+.++|.|.+.+.
T Consensus 150 -----------------------------------------------~~~~~P~i~~~~~~~~-~~~g~~v~L~C~~~~~ 181 (256)
T 3sob_H 150 -----------------------------------------------ASTKGPSVFPLAPSSK-STSGGTAALGCLVKDY 181 (256)
T ss_dssp -----------------------------------------------SCCBCCEEEEECCC------TTEEEEEEEEEEE
T ss_pred -----------------------------------------------CCCCCCEEEEECCCcc-cccCCcEEEEEEEEEE
Confidence 1134566654333332 6789999999999964
Q ss_pred CCCCcEEEEEECCEEccCCCc---eEEEeeCC---EEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEe
Q psy2166 524 TDPDLVVEWFYNGKKLPHGHR---YRTFHDFG---IVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 524 g~p~~~v~W~~~g~~l~~~~~---~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
.++.+.++| +|..+..+.. .....++. .+.|.|.....+| |.|+|.|.|..+.......|.+.
T Consensus 182 ~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~~ 250 (256)
T 3sob_H 182 FPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK 250 (256)
T ss_dssp BSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred ECCCeEEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEeccc
Confidence 333678999 6655432110 01111111 2468999988899 99999999998877766666543
|
| >2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-12 Score=111.43 Aligned_cols=93 Identities=23% Similarity=0.206 Sum_probs=78.4
Q ss_pred CCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCC-CCceEEEecCcEEEEEEcccccCCCeEEEEE
Q psy2166 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL-GSRFKTTADFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 64 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
.+|.|...+ ..+.+.+|+.++|.|.+. |.|.+.|.|+|||..+.. ..++.+..++ +|.|.+++.+|+|.|+|.
T Consensus 7 ~pP~i~~~p-~~~~v~~G~~v~l~C~~~--g~p~p~i~W~k~g~~~~~~~~~~~~~~~~---~L~i~~v~~~D~G~Y~C~ 80 (118)
T 2eo9_A 7 GPPVIRQGP-VNQTVAVDGTFVLSCVAT--GSPVPTILWRKDGVLVSTQDSRIKQLENG---VLQIRYAKLGDTGRYTCI 80 (118)
T ss_dssp CSCCCSBCC-CCEEEETTCEEEEECBCC--CSSCCEEEEEESSSBCCTTSTTEEEEETT---EEEEESCCGGGCCCEEEE
T ss_pred CCCEEEcCC-CCEEEcCCCeEEEEEEEE--ecCCCEEEEEECCEECcCCCCeEEEccCC---EEEEccCCcCCCEEEEEE
Confidence 456665544 468899999999999998 788899999999998864 5577766655 799999999999999999
Q ss_pred EEeCCeeEEEEEEEEEeccc
Q psy2166 143 AWNLAGETFTSTTIYCSTKE 162 (805)
Q Consensus 143 a~n~~g~~~~~~~l~V~~~~ 162 (805)
|.|..|.....+.|.|..++
T Consensus 81 a~n~~g~~~~~~~l~V~~~~ 100 (118)
T 2eo9_A 81 ASTPSGEATWSAYIEVQEFG 100 (118)
T ss_dssp EECSSCEEEEECCEEEECCS
T ss_pred EEcCCCcEEEEEEEEEEeCC
Confidence 99999998888888887653
|
| >2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-12 Score=110.19 Aligned_cols=92 Identities=16% Similarity=0.230 Sum_probs=76.3
Q ss_pred CCCeEEecCCCC--ceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEE
Q psy2166 64 AKPVFIVPLKPE--FKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTC 141 (805)
Q Consensus 64 ~~p~~~~~~~~~--~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 141 (805)
.+|.++..+... +.+.+|+.++|.|.+. +.|.+ |.|+|||..+..+.++.+..++....|.|.+++.+|+|.|+|
T Consensus 6 ~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~--~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 82 (104)
T 2e6p_A 6 SGPVHILSPQDKVSLTFTTSERVVLTCELS--RVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFEC 82 (104)
T ss_dssp SSSCCCCBCCSCEEEEEESSSCEECCEECS--STTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEE
T ss_pred CCCCEEECCCCCccEEEeCCCcEEEEEEec--CCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEE
Confidence 356666555533 6889999999999998 57777 999999999998889999888888899999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEeccc
Q psy2166 142 RAWNLAGETFTSTTIYCSTKE 162 (805)
Q Consensus 142 ~a~n~~g~~~~~~~l~V~~~~ 162 (805)
.|.|..+ .+.|.|..++
T Consensus 83 ~a~n~~~----~~~l~V~~~P 99 (104)
T 2e6p_A 83 RTEGVSA----FFGVTVQDPS 99 (104)
T ss_dssp ECSSCCC----CEEEEEECCC
T ss_pred EECCceE----EEEEEEcCCC
Confidence 9988643 5667776654
|
| >3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-12 Score=107.94 Aligned_cols=93 Identities=11% Similarity=0.159 Sum_probs=72.5
Q ss_pred CCCeEEecCCCCceecCCCcEEEEEEEecCCCCC---ceEEEEECCEecC---CCCceEEEec------CcEEEEEEccc
Q psy2166 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPN---LKIEWIFNGKPLE---LGSRFKTTAD------FGFVTLDLTEV 131 (805)
Q Consensus 64 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~---~~v~W~k~g~~i~---~~~~~~~~~~------~~~~~L~I~~~ 131 (805)
+.|.|+..+. .+.+.+|+.++|.|.+. |.|. +.|.|+|++.... .+.++.+... ....+|.|.++
T Consensus 3 p~p~f~~~p~-~~~v~~G~~v~L~C~~~--g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v 79 (108)
T 3cx2_A 3 PIGLFVMRPQ-DGEVTVGGSITFSARVA--GASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDA 79 (108)
T ss_dssp CCCSCSBCCC-CEEEETTCCEEEEEEEE--CC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSC
T ss_pred CccEEEeCCC-cEEEeCCCCEEEEEEEC--CCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecC
Confidence 4577766554 78999999999999999 6777 8999999873221 2345554321 12568999999
Q ss_pred ccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy2166 132 YDRDQGIYTCRAWNLAGETFTSTTIYCS 159 (805)
Q Consensus 132 ~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 159 (805)
+.+|+|.|+|.|.|..|.....+.|.|.
T Consensus 80 ~~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 80 QPAFTGSYRCEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred CCccCEEEEEEEecCCCceEEEEEEEEe
Confidence 9999999999999999999999999885
|
| >4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-12 Score=108.31 Aligned_cols=80 Identities=16% Similarity=0.262 Sum_probs=68.8
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEE
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 777 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~ 777 (805)
|.+. .+.+|+.+.|.|.+. | .|.+.|+|+|..+..+.++.+. .+ .|.|.+++.+|+|.|+|.|.|..|..+
T Consensus 8 p~~~-~v~~G~~~~l~C~~~--~--~p~v~W~k~g~~~~~~~~~~~~--~~--~L~i~~~~~~D~G~Y~C~a~n~~g~~~ 78 (95)
T 4hwu_A 8 PEAY-VVAPGESLELQCMLK--D--AAVISWTKDGVHLGPNNRTVLI--GE--YLQIKGATPRDSGLYACTAARTVDSET 78 (95)
T ss_dssp CEEE-EECTTSCEEEECCCC--T--TCEEEEEETTEEECCCSSEEEE--TT--EEEECSCCGGGCEEEEEEEECSSCEEE
T ss_pred CCcE-EECCCCEEEEEEEeC--C--CCEEEEEECCEECCCCceEEEe--CC--EEEECcCCcccCEEEEEEEccCCCcEE
Confidence 3444 799999999999987 6 4699999999999888777653 33 699999999999999999999999998
Q ss_pred EEEEEEEEE
Q psy2166 778 ISVNLECVV 786 (805)
Q Consensus 778 ~~~~l~V~~ 786 (805)
..+.|.|..
T Consensus 79 ~~~~l~V~~ 87 (95)
T 4hwu_A 79 WIFMVNVTD 87 (95)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEEeC
Confidence 888888864
|
| >2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-12 Score=108.95 Aligned_cols=96 Identities=19% Similarity=0.159 Sum_probs=74.6
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecC-CCCCceEEEEECCE-ecCC--CCceEEEec--C----cEEEEEEcccccC
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPK-NDPNLKIEWIFNGK-PLEL--GSRFKTTAD--F----GFVTLDLTEVYDR 134 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~-~~p~~~v~W~k~g~-~i~~--~~~~~~~~~--~----~~~~L~I~~~~~~ 134 (805)
.+.|+..+ .++.|.+|+.++|.|.+.+. +.|.|.|+|||++. .+.. +.++.+... . ..++|+|.+++.+
T Consensus 12 ~~~f~~~P-~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 90 (118)
T 2edn_A 12 TGVFLKKP-DSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLG 90 (118)
T ss_dssp SSSCSBCC-CCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTT
T ss_pred cceEEECC-CCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChh
Confidence 45666655 57899999999999999843 24899999999752 2222 345555432 1 2578999999999
Q ss_pred CCeEEEEEEEeCCeeEEEEEEEEEecc
Q psy2166 135 DQGIYTCRAWNLAGETFTSTTIYCSTK 161 (805)
Q Consensus 135 D~G~Y~C~a~n~~g~~~~~~~l~V~~~ 161 (805)
|+|.|+|.|.|..|..++.+.|+|..+
T Consensus 91 D~G~Y~Cevsn~~g~~s~~~~L~V~~~ 117 (118)
T 2edn_A 91 DRGYYRLEVKAKDTCDSCGFNIDVEAP 117 (118)
T ss_dssp TCSCEEEEEECSSCEEEEEECCEEECC
T ss_pred hCEEEEEEEEEcCCcEEEEEEEEEEcC
Confidence 999999999999999999999999753
|
| >3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-12 Score=111.92 Aligned_cols=83 Identities=18% Similarity=0.171 Sum_probs=65.4
Q ss_pred ccCCCCeEEEEEEEeecC--CCCeEEEEEECCEEcc-----CCCCeEEEee---CcEEEEEEcCCCCCCCEEEEEEEEcC
Q psy2166 703 NLSEGEIAHFEASLIPVG--DQTMTVEFLYNGKPIE-----ASHRIRTVHA---FGMVVLEILGTKIEDTGVYTCRATNK 772 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g--~p~~~v~W~~~g~~l~-----~~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~ 772 (805)
.+.+|+++.|.|.+. | .|.+.|.|+++|..+. ...+...... .....|.|.+++.+|+|.|+|.|.|.
T Consensus 19 ~v~~G~~v~L~C~~~--g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 96 (122)
T 3s35_X 19 ELSVGEKLVLNCTAR--TELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSG 96 (122)
T ss_dssp EEEETCCEEEEEEEE--ECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECS
T ss_pred EEecCCeEEEEEEEE--cCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccC
Confidence 789999999999999 6 5667999999987443 1112111111 13457999999999999999999999
Q ss_pred CccEEEEEEEEEEEe
Q psy2166 773 WGQAEISVNLECVVW 787 (805)
Q Consensus 773 ~G~~~~~~~l~V~~~ 787 (805)
.|....++.|.|...
T Consensus 97 ~g~~~~~~~l~V~~~ 111 (122)
T 3s35_X 97 LMTKKNSTFVRVHEK 111 (122)
T ss_dssp SCEEEEEEEEEEEEE
T ss_pred CCceEEEEEEEEecc
Confidence 999999999999764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 805 | ||||
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 9e-15 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 2e-13 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 6e-08 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 6e-08 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 3e-07 | |
| d1g1ca_ | 98 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 2e-05 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 2e-14 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 3e-14 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 4e-13 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 5e-11 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 2e-09 | |
| d2cqva1 | 101 | b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T | 8e-09 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 2e-13 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 4e-13 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 3e-10 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 3e-10 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 1e-09 | |
| d1biha4 | 89 | b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr | 1e-06 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 1e-12 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 3e-11 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 7e-10 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 1e-08 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 4e-08 | |
| d3dara1 | 97 | b.1.1.4 (A:153-249) Fibroblast growth factor recep | 4e-08 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 4e-12 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 1e-11 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 2e-09 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 3e-09 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 9e-09 | |
| d1koaa1 | 97 | b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha | 5e-06 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 5e-12 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 9e-12 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 2e-08 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 2e-08 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 2e-07 | |
| d1fhga_ | 102 | b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) | 2e-05 | |
| d1pd6a_ | 94 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 3e-11 | |
| d1pd6a_ | 94 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 2e-09 | |
| d1pd6a_ | 94 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 2e-09 | |
| d1pd6a_ | 94 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 6e-09 | |
| d1pd6a_ | 94 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 2e-06 | |
| d1pd6a_ | 94 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 0.003 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 4e-11 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 2e-07 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 1e-06 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 1e-06 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 7e-06 | |
| d1nbqa2 | 104 | b.1.1.4 (A:130-233) Junction adhesion molecule, JA | 2e-05 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 5e-11 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 1e-10 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 3e-07 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 3e-07 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 2e-05 | |
| d1tnna_ | 91 | b.1.1.4 (A:) Titin {Human (Homo sapiens), differen | 2e-05 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 8e-11 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 7e-09 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 6e-06 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 6e-06 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 5e-05 | |
| d1cs6a4 | 89 | b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall | 7e-05 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 3e-10 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 3e-08 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 1e-05 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 1e-05 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 6e-05 | |
| d1wiua_ | 93 | b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el | 0.003 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 6e-10 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 2e-09 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 4e-08 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 4e-08 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 2e-07 | |
| d2fdbp2 | 109 | b.1.1.4 (P:2252-2360) Fibroblast growth factor rec | 2e-06 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 7e-10 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 5e-09 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 9e-09 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 3e-08 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 5e-07 | |
| d1qz1a3 | 100 | b.1.1.4 (A:190-289) Neural cell adhesion molecule | 7e-05 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 7e-10 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 4e-09 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 7e-05 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 7e-05 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 8e-05 | |
| d1rhfa1 | 91 | b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor | 6e-04 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 1e-09 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 9e-09 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 1e-05 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 1e-05 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 6e-04 | |
| d1biha1 | 94 | b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi | 0.002 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 2e-09 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 4e-08 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 6e-08 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 6e-07 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 8e-06 | |
| d1f97a2 | 110 | b.1.1.4 (A:129-238) Junction adhesion molecule, JA | 2e-04 | |
| d1tiua_ | 89 | b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re | 4e-09 | |
| d1tiua_ | 89 | b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re | 8e-08 | |
| d1tiua_ | 89 | b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re | 1e-06 | |
| d1tiua_ | 89 | b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re | 1e-06 | |
| d1tiua_ | 89 | b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re | 8e-04 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 4e-09 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 8e-08 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 2e-07 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 7e-07 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 3e-04 | |
| d1he7a_ | 107 | b.1.1.4 (A:) High affinity nerve growth factor rec | 7e-04 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 4e-09 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 4e-07 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 8e-05 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 8e-05 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 1e-04 | |
| d2c9aa1 | 96 | b.1.1.4 (A:184-279) Receptor-type tyrosine-protein | 0.002 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 1e-08 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 3e-07 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 2e-05 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 4e-05 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 8e-05 | |
| d1cs6a1 | 97 | b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus | 8e-05 | |
| d1wwbx_ | 103 | b.1.1.4 (X:) Ligand binding domain of trkB recepto | 2e-08 | |
| d1wwbx_ | 103 | b.1.1.4 (X:) Ligand binding domain of trkB recepto | 2e-07 | |
| d1wwbx_ | 103 | b.1.1.4 (X:) Ligand binding domain of trkB recepto | 3e-04 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 2e-08 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 1e-06 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 3e-05 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 4e-05 | |
| d1epfa2 | 92 | b.1.1.4 (A:98-189) Neural cell adhesion molecule ( | 2e-04 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 2e-08 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 2e-08 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 2e-07 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 2e-07 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 3e-05 | |
| d1cs6a3 | 91 | b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall | 2e-04 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 2e-08 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 4e-08 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 3e-07 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 4e-07 | |
| d1gxea_ | 130 | b.1.1.4 (A:) Cardiac myosin binding protein C, dif | 3e-05 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 7e-08 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 2e-07 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 2e-07 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 2e-07 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 0.002 | |
| d1x44a1 | 90 | b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty | 0.002 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 8e-08 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 9e-08 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 6e-06 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 6e-06 | |
| d3b5ha1 | 101 | b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo | 8e-05 | |
| d1zxqa1 | 106 | b.1.1.3 (A:87-192) Intercellular cell adhesion mol | 3e-07 | |
| d1zxqa1 | 106 | b.1.1.3 (A:87-192) Intercellular cell adhesion mol | 6e-07 | |
| d1zxqa1 | 106 | b.1.1.3 (A:87-192) Intercellular cell adhesion mol | 4e-05 | |
| d1zxqa1 | 106 | b.1.1.3 (A:87-192) Intercellular cell adhesion mol | 0.001 | |
| d1zxqa1 | 106 | b.1.1.3 (A:87-192) Intercellular cell adhesion mol | 0.001 | |
| d1iray3 | 107 | b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor | 3e-07 | |
| d1iray3 | 107 | b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor | 6e-06 | |
| d1iray3 | 107 | b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor | 7e-06 | |
| d1iray3 | 107 | b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor | 3e-04 | |
| d1iray3 | 107 | b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor | 0.001 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 4e-07 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 7e-07 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 7e-07 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 2e-06 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 8e-04 | |
| d1gl4b_ | 89 | b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu | 0.002 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 8e-07 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 1e-06 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 1e-05 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 1e-05 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 7e-05 | |
| d2avga1 | 110 | b.1.1.4 (A:1-110) Cardiac myosin binding protein C | 3e-04 | |
| d1iray1 | 101 | b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H | 9e-07 | |
| d1iray1 | 101 | b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H | 7e-06 | |
| d1iray1 | 101 | b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H | 1e-05 | |
| d1iray1 | 101 | b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H | 4e-05 | |
| d1iray1 | 101 | b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H | 2e-04 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 2e-06 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 2e-06 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 2e-05 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 1e-04 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 7e-04 | |
| d2dava1 | 113 | b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t | 0.003 | |
| d1wwca_ | 105 | b.1.1.4 (A:) NT3 binding domain of trkC receptor { | 2e-06 | |
| d1wwca_ | 105 | b.1.1.4 (A:) NT3 binding domain of trkC receptor { | 9e-06 | |
| d1wwca_ | 105 | b.1.1.4 (A:) NT3 binding domain of trkC receptor { | 1e-05 | |
| d1wwca_ | 105 | b.1.1.4 (A:) NT3 binding domain of trkC receptor { | 8e-05 | |
| d2ifga1 | 92 | b.1.1.4 (A:192-283) High affinity nerve growth fac | 2e-06 | |
| d2ifga1 | 92 | b.1.1.4 (A:192-283) High affinity nerve growth fac | 1e-04 | |
| d2ifga1 | 92 | b.1.1.4 (A:192-283) High affinity nerve growth fac | 0.002 | |
| d2ifga1 | 92 | b.1.1.4 (A:192-283) High affinity nerve growth fac | 0.002 | |
| d1biha3 | 97 | b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr | 2e-06 | |
| d1biha3 | 97 | b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr | 8e-06 | |
| d1rhfa2 | 85 | b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto | 3e-06 | |
| d1rhfa2 | 85 | b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto | 1e-05 | |
| d1rhfa2 | 85 | b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto | 5e-05 | |
| d1rhfa2 | 85 | b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto | 5e-05 | |
| d1rhfa2 | 85 | b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto | 9e-04 | |
| d2crya1 | 115 | b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR | 9e-06 | |
| d2crya1 | 115 | b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR | 7e-04 | |
| d2crya1 | 115 | b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR | 8e-04 | |
| d2crya1 | 115 | b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR | 0.003 | |
| d1f97a1 | 102 | b.1.1.1 (A:27-128) Junction adhesion molecule, JAM | 1e-05 | |
| d1f97a1 | 102 | b.1.1.1 (A:27-128) Junction adhesion molecule, JAM | 0.001 | |
| d1cs6a2 | 105 | b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall | 1e-05 | |
| d1cs6a2 | 105 | b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall | 4e-05 | |
| d1cs6a2 | 105 | b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall | 4e-05 | |
| d1cs6a2 | 105 | b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall | 4e-05 | |
| d1cs6a2 | 105 | b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall | 0.002 | |
| d1hnga1 | 98 | b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no | 1e-05 | |
| d1nbqa1 | 105 | b.1.1.1 (A:25-129) Junction adhesion molecule, JAM | 2e-05 | |
| d1nbqa1 | 105 | b.1.1.1 (A:25-129) Junction adhesion molecule, JAM | 5e-04 | |
| d1iama1 | 103 | b.1.1.3 (A:83-185) Intercellular cell adhesion mol | 3e-05 | |
| d1iama1 | 103 | b.1.1.3 (A:83-185) Intercellular cell adhesion mol | 3e-05 | |
| d1iama1 | 103 | b.1.1.3 (A:83-185) Intercellular cell adhesion mol | 0.003 | |
| d1iama1 | 103 | b.1.1.3 (A:83-185) Intercellular cell adhesion mol | 0.003 | |
| d1pkoa_ | 126 | b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein ( | 3e-05 | |
| d1pkoa_ | 126 | b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein ( | 1e-04 | |
| d1pkoa_ | 126 | b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein ( | 4e-04 | |
| d1pkoa_ | 126 | b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein ( | 4e-04 | |
| d1iray2 | 103 | b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor | 1e-04 | |
| d1iray2 | 103 | b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor | 7e-04 | |
| d1iray2 | 103 | b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor | 0.002 | |
| d1iray2 | 103 | b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor | 0.004 | |
| d1biha2 | 111 | b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro | 2e-04 | |
| d1biha2 | 111 | b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro | 8e-04 | |
| d1biha2 | 111 | b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro | 0.002 | |
| d1biha2 | 111 | b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro | 0.002 | |
| d1epfa1 | 97 | b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC | 3e-04 | |
| d1n26a1 | 93 | b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai | 3e-04 | |
| d1n26a1 | 93 | b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai | 0.001 | |
| d1n26a1 | 93 | b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai | 0.001 | |
| d1n26a1 | 93 | b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai | 0.001 | |
| d2aw2a1 | 104 | b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator | 4e-04 | |
| d2aw2a1 | 104 | b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator | 0.004 | |
| d1f2qa2 | 89 | b.1.1.4 (A:86-174) IgE high affinity receptor alph | 0.002 | |
| d1f2qa2 | 89 | b.1.1.4 (A:86-174) IgE high affinity receptor alph | 0.002 | |
| d1eaja_ | 124 | b.1.1.1 (A:) Coxsackie virus and adenovirus recept | 0.003 | |
| d1gsma1 | 90 | b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m | 0.004 |
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 68.4 bits (166), Expect = 9e-15
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 4/99 (4%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
+ PK I+S + G AHF + P+ + EW+ NG I +R+
Sbjct: 3 EAPKIFERIQSQT-VGQGSDAHFRVRVV--GKPDPECEWYKNGVKIERSDRIYWYWPEDN 59
Query: 362 VVMDIAY-VQSHDSGEYVCRAWNKYGEDFTRATIKCFGK 399
V + V DS + +A N GE + A + K
Sbjct: 60 VCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 98
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 64.5 bits (156), Expect = 2e-13
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR-TFHDFG 552
EAPK +I T + +G AHF R+ PD EW+ NG K+ R + +
Sbjct: 3 EAPKIFERIQSQT-VGQGSDAHFRVRVV--GKPDPECEWYKNGVKIERSDRIYWYWPEDN 59
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSK 591
+ L I E+S +A N G + A L +K
Sbjct: 60 VCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 98
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 49.1 bits (116), Expect = 6e-08
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
P+ Q + + +G AHF + VG E+ NG IE S RI V
Sbjct: 4 APKIFERIQSQT-VGQGSDAHFRVRV--VGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 60
Query: 262 VLEIL-GTKIEDTGVYTCRATNKWGQAEISVNL 293
++ ED+ +A N G+ L
Sbjct: 61 CELVIRDVTGEDSASIMVKAINIAGETSSHAFL 93
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 49.1 bits (116), Expect = 6e-08
Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
P+ Q + + +G AHF + VG E+ NG IE S RI V
Sbjct: 4 APKIFERIQSQT-VGQGSDAHFRVRV--VGKPDPECEWYKNGVKIERSDRIYWYWPEDNV 60
Query: 751 VLEIL-GTKIEDTGVYTCRATNKWGQAEISVNL 782
++ ED+ +A N G+ L
Sbjct: 61 CELVIRDVTGEDSASIMVKAINIAGETSSHAFL 93
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 46.8 bits (110), Expect = 3e-07
Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 4/98 (4%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK-TTADFGF 123
P ++ + +G+ H +V P+ + EW NG +E R +
Sbjct: 4 APKIFERIQSQ-TVGQGSDAHFRVRVV--GKPDPECEWYKNGVKIERSDRIYWYWPEDNV 60
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTK 161
L + +V D +A N+AGET + + K
Sbjct: 61 CELVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 98
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 41.8 bits (97), Expect = 2e-05
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Query: 601 PEVEWFYNGKKLPHGHRYR-TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASL 659
PE EW+ NG K+ R + + + L I E+S +A N G + A L
Sbjct: 34 PECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFL 93
Query: 660 KCVSK 664
+K
Sbjct: 94 LVQAK 98
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.6 bits (164), Expect = 2e-14
Identities = 15/96 (15%), Positives = 30/96 (31%), Gaps = 3/96 (3%)
Query: 304 PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVV 363
P+ + + ++ G+S +T + W K I +K+ +
Sbjct: 1 PQIIQFPEDQK-VRAGESVELFGKVT--GTQPITCTWMKFRKQIQESEHMKVENSENGSK 57
Query: 364 MDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGK 399
+ I + G Y NK G + + K
Sbjct: 58 LTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 93
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.2 bits (163), Expect = 3e-14
Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 3/96 (3%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
P+ I D ++ G+S ++T + W K++ + +
Sbjct: 1 PQIIQFPEDQK-VRAGESVELFGKVTG--TQPITCTWMKFRKQIQESEHMKVENSENGSK 57
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTKASLKCVSK 591
L IL +E+ G Y NK GS + +L V K
Sbjct: 58 LTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDK 93
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.7 bits (154), Expect = 4e-13
Identities = 29/105 (27%), Positives = 42/105 (40%), Gaps = 5/105 (4%)
Query: 203 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV 262
PQ + + GE + G Q +T ++ K I+ S ++ ++
Sbjct: 1 PQIIQFPEDQK-VRAGESVELFGKV--TGTQPITCTWMKFRKQIQESEHMKVENSENGSK 57
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPKFT 307
L IL + E G YT NK G + VNL VDK PP T
Sbjct: 58 LTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP--DPPAGT 100
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.9 bits (139), Expect = 5e-11
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 4/99 (4%)
Query: 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV 751
PQ + + GE + G Q +T ++ K I+ S ++ ++
Sbjct: 1 PQIIQFPEDQK-VRAGESVELFGKV--TGTQPITCTWMKFRKQIQESEHMKVENSENGSK 57
Query: 752 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPS 790
L IL + E G YT NK G + VNL VV P
Sbjct: 58 LTILAARQEHCGCYTLLVENKLGSRQAQVNLT-VVDKPD 95
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (127), Expect = 2e-09
Identities = 16/108 (14%), Positives = 33/108 (30%), Gaps = 9/108 (8%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVT 125
P I + + K+ + + L +V + W+ K ++ K
Sbjct: 1 PQIIQFPE-DQKVRAGESVELFGKVT--GTQPITCTWMKFRKQIQESEHMKVENSENGSK 57
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKESLIERTQHPKG 173
L + G YT N G + +++++ P G
Sbjct: 58 LTILAARQEHCGCYTLLVENKLGSRQAQVNL------TVVDKPDPPAG 99
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.8 bits (123), Expect = 8e-09
Identities = 15/64 (23%), Positives = 23/64 (35%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
W K++ + + L IL +E+ G Y NK GS + +L
Sbjct: 30 ITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLT 89
Query: 661 CVSK 664
V K
Sbjct: 90 VVDK 93
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 64.4 bits (156), Expect = 2e-13
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIV 554
APK+ + V +K+GQ ++T P V W +N K L G T
Sbjct: 2 APKYEQKPEKVIVVKQGQDVTIPCKVTG--LPAPNVVWSHNAKPLSGGRATVTDSG---- 55
Query: 555 ILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L I + G Y CRATN++G + ++
Sbjct: 56 -LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 87
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 63.2 bits (153), Expect = 4e-13
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
PK+ + + +K G C +T P V W HN KP+
Sbjct: 2 APKYEQKPEKVIVVKQGQDVTIPCKVT--GLPAPNVVWSHNAKPLSGGRATVT-----DS 54
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ I V++ D G Y CRA N++G+ + ++
Sbjct: 55 GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 87
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 55.5 bits (133), Expect = 3e-10
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 7/93 (7%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
P++ + + + + +G+ + G V + +N KP+
Sbjct: 2 APKYEQKPEKVIVVKQGQDVTIPCKV--TGLPAPNVVWSHNAKPLSGGRAT-----VTDS 54
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
L I G K D G Y CRATN+ G ++
Sbjct: 55 GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 87
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 55.5 bits (133), Expect = 3e-10
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 7/93 (7%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
P++ + + + + +G+ + G V + +N KP+
Sbjct: 2 APKYEQKPEKVIVVKQGQDVTIPCKV--TGLPAPNVVWSHNAKPLSGGRAT-----VTDS 54
Query: 751 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
L I G K D G Y CRATN+ G ++
Sbjct: 55 GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 87
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 53.2 bits (127), Expect = 1e-09
Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
+ P + + + + Q + + +V P + W N KPL G T
Sbjct: 1 SAPKYEQKPEKVIVVKQGQDVTIPCKVT--GLPAPNVVWSHNAKPLSGGRATVTD----- 53
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L + V + D+G Y CRA N G+ + T +
Sbjct: 54 SGLVIKGVKNGDKGYYGCRATNEHGDKYFETLV 86
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 45.1 bits (106), Expect = 1e-06
Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 13/83 (15%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 637
G DVT + C P V W +N K L G T L I
Sbjct: 18 GQDVT---IPCKVTGL-----PAPNVVWSHNAKPLSGGRATVTDSG-----LVIKGVKNG 64
Query: 638 NSGVYECRATNKYGSDVTKASLK 660
+ G Y CRATN++G + ++
Sbjct: 65 DKGYYGCRATNEHGDKYFETLVQ 87
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 62.1 bits (150), Expect = 1e-12
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 6/96 (6%)
Query: 304 PKFTSHIK---SLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVS-DF 359
P +T+ K L + ++ F C +P + W NGK ++R+
Sbjct: 2 PYWTNTEKMEKRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIGGYKVRN 59
Query: 360 GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + V D G Y C N+YG +
Sbjct: 60 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 95
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 58.7 bits (141), Expect = 3e-11
Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 6/97 (6%)
Query: 495 APKFITQISDVTQL---KEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTF-HD 550
AP + +L + F +P + W NGK+ HR +
Sbjct: 1 APYWTNTEKMEKRLHAVPAANTVKFRCPAGG--NPMPTMRWLKNGKEFKQEHRIGGYKVR 58
Query: 551 FGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L + + G Y C N+YGS L
Sbjct: 59 NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 95
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 54.4 bits (130), Expect = 7e-10
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 6/95 (6%)
Query: 66 PVFIVPLKPEFKL---GEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT-TADF 121
P + K E +L A + +P + W+ NGK + R
Sbjct: 2 PYWTNTEKMEKRLHAVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIGGYKVRN 59
Query: 122 GFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+L + V D+G YTC N G + +
Sbjct: 60 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL 94
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 51.0 bits (121), Expect = 1e-08
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTF-HDFGIVILDILYCYE 636
+ V +C + N +P + W NGK+ HR + L +
Sbjct: 20 ANTVK---FRCPAGGN-----PMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP 71
Query: 637 ENSGVYECRATNKYGSDVTKASLK 660
+ G Y C N+YGS L
Sbjct: 72 SDKGNYTCVVENEYGSINHTYHLD 95
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 49.4 bits (117), Expect = 4e-08
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 203 PQFTSEFQH---LSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTV-HAF 258
P +T+ + L + F G+ T+ +L NGK + HRI
Sbjct: 2 PYWTNTEKMEKRLHAVPAANTVKFRCPA--GGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 59
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
L + D G YTC N++G + +L+
Sbjct: 60 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 95
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Score = 49.4 bits (117), Expect = 4e-08
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 692 PQFTSEFQH---LSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTV-HAF 747
P +T+ + L + F G+ T+ +L NGK + HRI
Sbjct: 2 PYWTNTEKMEKRLHAVPAANTVKFRCPA--GGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 59
Query: 748 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
L + D G YTC N++G + +L+
Sbjct: 60 QHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD 95
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 61.1 bits (147), Expect = 4e-12
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
P+FI + + EGQSA+F R+ VV W + ++L +Y ++
Sbjct: 2 PRFIVKPYGTE-VGEGQSANFYCRVIA--SSPPVVTWHKDDRELKQSVKYMKRYNGNDYG 58
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L I ++ G Y RA N YG+ L
Sbjct: 59 LTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 90
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 59.5 bits (143), Expect = 1e-11
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 3/92 (3%)
Query: 304 PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVV 363
P+F E + +G SA+F C + V W + + + + +
Sbjct: 2 PRFIVKPYGTE-VGEGQSANFYCRVI--ASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG 58
Query: 364 MDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ I V+ D GEY RA N YG +
Sbjct: 59 LTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 90
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.0 bits (126), Expect = 2e-09
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 3/97 (3%)
Query: 203 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV 262
P+F + + EG+ A+F + + V + + + ++ S + +
Sbjct: 2 PRFIVKPYGTE-VGEGQSANFYCRV--IASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG 58
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKS 299
L I K +D G YT RA N +G E V L S
Sbjct: 59 LTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHS 95
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 52.6 bits (125), Expect = 3e-09
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
Query: 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV 751
P+F + + EG+ A+F + + V + + + ++ S + +
Sbjct: 2 PRFIVKPYGTE-VGEGQSANFYCRV--IASSPPVVTWHKDDRELKQSVKYMKRYNGNDYG 58
Query: 752 LEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
L I K +D G YT RA N +G E V L
Sbjct: 59 LTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 90
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 51.4 bits (122), Expect = 9e-09
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 3/92 (3%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV 124
+P FIV ++GE Q + +V + W + + L+ ++ +
Sbjct: 1 QPRFIVKPYGT-EVGEGQSANFYCRVI--ASSPPVVTWHKDDRELKQSVKYMKRYNGNDY 57
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L + V D+G YT RA N G +
Sbjct: 58 GLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL 89
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.3 bits (101), Expect = 5e-06
Identities = 15/60 (25%), Positives = 24/60 (40%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
P V W + ++L +Y ++ L I ++ G Y RA N YG+ L
Sbjct: 31 PVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN 90
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 60.7 bits (146), Expect = 5e-12
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 2/93 (2%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P FT I +E + +G +A F+C + DPE+ N + G
Sbjct: 8 KPYFTKTILDME-VVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRH-FQIDYDEEGNC 65
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ I+ V D +Y C+A N GE A +
Sbjct: 66 SLTISEVCGDDDAKYTCKAVNSLGEATCTAELL 98
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 60.3 bits (145), Expect = 9e-12
Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIV 554
P F I D+ + EG +A F+ ++ DP+++ N H + + G
Sbjct: 8 KPYFTKTILDME-VVEGSAARFDCKVEGYPDPEVMWFKDDN-PVKESRHFQIDYDEEGNC 65
Query: 555 ILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L I ++ Y C+A N G A L
Sbjct: 66 SLTISEVCGDDDAKYTCKAVNSLGEATCTAELL 98
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 50.7 bits (120), Expect = 2e-08
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR-TVHAFGM 260
P FT + + EG A F+ + G V + + P++ S + G
Sbjct: 8 KPYFTKTILDME-VVEGSAARFDCKVE--GYPDPEVMWFKDDNPVKESRHFQIDYDEEGN 64
Query: 261 VVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
L I +D YTC+A N G+A + L
Sbjct: 65 CSLTISEVCGDDDAKYTCKAVNSLGEATCTAEL 97
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 50.7 bits (120), Expect = 2e-08
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 4/93 (4%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR-TVHAFGM 749
P FT + + EG A F+ + G V + + P++ S + G
Sbjct: 8 KPYFTKTILDME-VVEGSAARFDCKVE--GYPDPEVMWFKDDNPVKESRHFQIDYDEEGN 64
Query: 750 VVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
L I +D YTC+A N G+A + L
Sbjct: 65 CSLTISEVCGDDDAKYTCKAVNSLGEATCTAEL 97
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 47.6 bits (112), Expect = 2e-07
Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 2/97 (2%)
Query: 60 EETFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTA 119
E+ KP F + ++ E + +VE DP + N
Sbjct: 3 EKPHVKPYFTKTILD-MEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKES-RHFQIDYD 60
Query: 120 DFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ G +L ++EV D YTC+A N GE + +
Sbjct: 61 EEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAEL 97
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Score = 41.8 bits (97), Expect = 2e-05
Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 598 SQLPEVEWFYNGKKLPHGHRYR-TFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 656
PEV WF + + ++ + + G L I ++ Y C+A N G
Sbjct: 35 YPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCT 94
Query: 657 ASLK 660
A L
Sbjct: 95 AELL 98
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.3 bits (140), Expect = 3e-11
Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGI 553
++ F ++ Q+ +G + D D V+W NG+++ F G
Sbjct: 4 KSTAFQKKLEPAYQVSKGHKIRLTVE---LADHDAEVKWLKNGQEIQMSGSKYIFESIGA 60
Query: 554 V-ILDILYCYEENSGVYECRATNKYGS 579
L I C + Y+C + S
Sbjct: 61 KRTLTISQCSLADDAAYQCVVGGEKCS 87
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (127), Expect = 2e-09
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 4/95 (4%)
Query: 198 EDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA 257
++ + F + + +S+G + D V++L NG+ I+ S +
Sbjct: 1 DEKKSTAFQKKLEPAYQVSKGHKIRLTVE---LADHDAEVKWLKNGQEIQMSGSKYIFES 57
Query: 258 FGMV-VLEILGTKIEDTGVYTCRATNKWGQAEISV 291
G L I + D Y C + E+ V
Sbjct: 58 IGAKRTLTISQCSLADDAAYQCVVGGEKCSTELFV 92
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (127), Expect = 2e-09
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 4/95 (4%)
Query: 687 EDGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA 746
++ + F + + +S+G + D V++L NG+ I+ S +
Sbjct: 1 DEKKSTAFQKKLEPAYQVSKGHKIRLTVE---LADHDAEVKWLKNGQEIQMSGSKYIFES 57
Query: 747 FGMV-VLEILGTKIEDTGVYTCRATNKWGQAEISV 780
G L I + D Y C + E+ V
Sbjct: 58 IGAKRTLTISQCSLADDAAYQCVVGGEKCSTELFV 92
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.8 bits (123), Expect = 6e-09
Identities = 13/86 (15%), Positives = 26/86 (30%), Gaps = 4/86 (4%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
+ F ++ + G + D + +V+W NG+ I + G
Sbjct: 4 KSTAFQKKLEPAYQVSKGHKIRLTVE---LADHDAEVKWLKNGQEIQMSGSKYIFESIGA 60
Query: 362 V-VMDIAYVQSHDSGEYVCRAWNKYG 386
+ I+ D Y C +
Sbjct: 61 KRTLTISQCSLADDAAYQCVVGGEKC 86
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (104), Expect = 2e-06
Identities = 15/87 (17%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV 124
F L+P +++ + + L ++ D + +++W+ NG+ +++ G
Sbjct: 5 STAFQKKLEPAYQVSKGHKIRLTVEL---ADHDAEVKWLKNGQEIQMSGSKYIFESIGAK 61
Query: 125 -TLDLTEVYDRDQGIYTCRAWNLAGET 150
TL +++ D Y C T
Sbjct: 62 RTLTISQCSLADDAAYQCVVGGEKCST 88
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.6 bits (81), Expect = 0.003
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIV-ILDILYCYEENSGVYECRATNKYGS 652
EV+W NG+++ F G L I C + Y+C + S
Sbjct: 35 AEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKCS 87
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.1 bits (139), Expect = 4e-11
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 9/100 (9%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
PP + G+ A C+ P + WF +G + +
Sbjct: 2 PPSKPTVNIPSS-ATIGNRAVLTCSEQ-DGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSY 59
Query: 363 VMD-------IAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
V++ + + D+GEY C A N YG T ++
Sbjct: 60 VLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 99
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (112), Expect = 2e-07
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 8/99 (8%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
P ++ + G A P WF +G +P + +
Sbjct: 2 PPSKPTVNIPSSATIGNRAVLTCSEQ-DGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV 60
Query: 556 LD-------ILYCYEENSGVYECRATNKYGSDVTKASLK 587
L+ ++G Y C A N YG+ +T +++
Sbjct: 61 LNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVR 99
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (107), Expect = 1e-06
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 9/99 (9%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
PP + S+ + G A S G + +G + + + +
Sbjct: 2 PPSKPT-VNIPSSATIGNRAVLTCS-EQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSY 59
Query: 262 V-------LEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
V L DTG Y+C A N +G S +
Sbjct: 60 VLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV 98
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (107), Expect = 1e-06
Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 9/99 (9%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
PP + S+ + G A S G + +G + + + +
Sbjct: 2 PPSKPT-VNIPSSATIGNRAVLTCS-EQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSY 59
Query: 751 V-------LEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
V L DTG Y+C A N +G S +
Sbjct: 60 VLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAV 98
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 7e-06
Identities = 17/104 (16%), Positives = 25/104 (24%), Gaps = 9/104 (8%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVT 125
P P L P + W +G + +
Sbjct: 3 PSKPTVNIPS-SATIGNRAVLTCSE-QDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV 60
Query: 126 LD-------LTEVYDRDQGIYTCRAWNLAGETFTSTTIYCSTKE 162
L+ + D G Y+C A N G TS + E
Sbjct: 61 LNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE 104
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (97), Expect = 2e-05
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 14/90 (15%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILD------- 630
G+ L C + S E WF +G +P + +L+
Sbjct: 17 GNRAV---LTCSEQDG----SPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELV 69
Query: 631 ILYCYEENSGVYECRATNKYGSDVTKASLK 660
++G Y C A N YG+ +T +++
Sbjct: 70 FDPLSASDTGEYSCEARNGYGTPMTSNAVR 99
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 57.6 bits (138), Expect = 5e-11
Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 305 KFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVM 364
+ + +S+ + +G+SA F C +P V W G+ + R ++ +
Sbjct: 1 RILTKPRSMT-VYEGESARFSCDTD--GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTF 57
Query: 365 DIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+I+ VQ+ D G Y N G+ T+
Sbjct: 58 EISSVQASDEGNYSVVVENSEGKQEAEFTLT 88
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 56.4 bits (135), Expect = 1e-10
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 3/91 (3%)
Query: 497 KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVIL 556
+ +T+ +T + EG+SA F +P V W G+ L R++
Sbjct: 1 RILTKPRSMT-VYEGESARFSCDTD--GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTF 57
Query: 557 DILYCYEENSGVYECRATNKYGSDVTKASLK 587
+I + G Y N G + +L
Sbjct: 58 EISSVQASDEGNYSVVVENSEGKQEAEFTLT 88
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 46.8 bits (110), Expect = 3e-07
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 204 QFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVL 263
+ ++ + ++ + EGE A F G+ TV +L G+ + S R +
Sbjct: 1 RILTKPRSMT-VYEGESARFSCDT--DGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTF 57
Query: 264 EILGTKIEDTGVYTCRATNKWGQAEISVNL 293
EI + D G Y+ N G+ E L
Sbjct: 58 EISSVQASDEGNYSVVVENSEGKQEAEFTL 87
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 46.8 bits (110), Expect = 3e-07
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 693 QFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVL 752
+ ++ + ++ + EGE A F G+ TV +L G+ + S R +
Sbjct: 1 RILTKPRSMT-VYEGESARFSCDT--DGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTF 57
Query: 753 EILGTKIEDTGVYTCRATNKWGQAEISVNL 782
EI + D G Y+ N G+ E L
Sbjct: 58 EISSVQASDEGNYSVVVENSEGKQEAEFTL 87
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 41.8 bits (97), Expect = 2e-05
Identities = 14/83 (16%), Positives = 23/83 (27%), Gaps = 8/83 (9%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 637
G C + +P V W G+ L R++ +I
Sbjct: 14 GESAR---FSCDTDGE-----PVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQAS 65
Query: 638 NSGVYECRATNKYGSDVTKASLK 660
+ G Y N G + +L
Sbjct: 66 DEGNYSVVVENSEGKQEAEFTLT 88
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Score = 41.8 bits (97), Expect = 2e-05
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 80 EAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIY 139
E + + +P + W+ G+ L +R + T T +++ V D+G Y
Sbjct: 13 EGESARFSCDTD--GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNY 70
Query: 140 TCRAWNLAGETFTSTTI 156
+ N G+ T+
Sbjct: 71 SVVVENSEGKQEAEFTL 87
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 56.8 bits (136), Expect = 8e-11
Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 7/92 (7%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
P ++ I+D G + + P + +
Sbjct: 2 PDWLDVITDTE-ADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGE------ 54
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L E+SG+Y+C A NK+G+ A L
Sbjct: 55 LRFSKLVLEDSGMYQCVAENKHGTVYASAELT 86
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 51.4 bits (122), Expect = 7e-09
Identities = 22/92 (23%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 304 PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVV 363
P + I E G + C + P V W +G+P+ +NR+++
Sbjct: 2 PDWLDVITDTE-ADIGSDLRWSCVAS--GKPRPAVRWLRDGQPLASQNRIEVSGGE---- 54
Query: 364 MDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + + DSG Y C A NK+G + A +
Sbjct: 55 LRFSKLVLEDSGMYQCVAENKHGTVYASAELT 86
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 42.9 bits (100), Expect = 6e-06
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 7/91 (7%)
Query: 203 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV 262
P + G + G V +L +G+P+ + +RI
Sbjct: 2 PDWLDVITDTE-ADIGSDLRWSCVA--SGKPRPAVRWLRDGQPLASQNRIEVSGGE---- 54
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
L +ED+G+Y C A NK G S L
Sbjct: 55 LRFSKLVLEDSGMYQCVAENKHGTVYASAEL 85
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 42.9 bits (100), Expect = 6e-06
Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 7/91 (7%)
Query: 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV 751
P + G + G V +L +G+P+ + +RI
Sbjct: 2 PDWLDVITDTE-ADIGSDLRWSCVA--SGKPRPAVRWLRDGQPLASQNRIEVSGGE---- 54
Query: 752 LEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
L +ED+G+Y C A NK G S L
Sbjct: 55 LRFSKLVLEDSGMYQCVAENKHGTVYASAEL 85
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 40.2 bits (93), Expect = 5e-05
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 12/83 (14%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 637
GSD+ CV+ P V W +G+ L +R L E
Sbjct: 16 GSDLR---WSCVASGK-----PRPAVRWLRDGQPLASQNRIEVSGGE----LRFSKLVLE 63
Query: 638 NSGVYECRATNKYGSDVTKASLK 660
+SG+Y+C A NK+G+ A L
Sbjct: 64 DSGMYQCVAENKHGTVYASAELT 86
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 40.2 bits (93), Expect = 7e-05
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
Query: 65 KPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
+P ++ + E +G L P + W+ +G+PL +R +
Sbjct: 1 QPDWLDVITDTEADIGS--DLRWSCVAS--GKPRPAVRWLRDGQPLASQNRIE----VSG 52
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L +++ D G+Y C A N G + S +
Sbjct: 53 GELRFSKLVLEDSGMYQCVAENKHGTVYASAEL 85
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 55.4 bits (132), Expect = 3e-10
Identities = 15/93 (16%), Positives = 26/93 (27%), Gaps = 3/93 (3%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIV 554
PK +T + +K G + + E PD W
Sbjct: 2 KPKILTASRKIK-IKAGFTHNLEVDFIG--APDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 555 ILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
+ +SG Y+ + N+ G D +
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 49.6 bits (117), Expect = 3e-08
Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 3/93 (3%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
PK + + ++ +K G + + E P+ W + + +
Sbjct: 2 KPKILTASRKIK-IKAGFTHNLEVDFI--GAPDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + DSG Y + N+ GED +
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.3 bits (98), Expect = 1e-05
Identities = 12/92 (13%), Positives = 28/92 (30%), Gaps = 3/92 (3%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
P+ + + + + G + E +G T + + +
Sbjct: 2 KPKILTASRKIK-IKAGFTHNLEVDF--IGAPDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
+ K D+G Y + N+ G+ E +
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.3 bits (98), Expect = 1e-05
Identities = 12/92 (13%), Positives = 28/92 (30%), Gaps = 3/92 (3%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
P+ + + + + G + E +G T + + +
Sbjct: 2 KPKILTASRKIK-IKAGFTHNLEVDF--IGAPDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 751 VLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+ K D+G Y + N+ G+ E +
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.3 bits (93), Expect = 6e-05
Identities = 15/92 (16%), Positives = 24/92 (26%), Gaps = 3/92 (3%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV 124
KP + + K+ +LE P+ W L A
Sbjct: 2 KPKILTASRK-IKIKAGFTHNLEVDFI--GAPDPTATWTVGDSGAALAPELLVDAKSSTT 58
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
++ D G Y + N GE +
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGEDEAIFEV 90
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 35.7 bits (81), Expect = 0.003
Identities = 8/60 (13%), Positives = 14/60 (23%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
P W + +SG Y+ + N+ G D +
Sbjct: 32 PTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 55.0 bits (131), Expect = 6e-10
Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 15/109 (13%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLP------------- 540
P + G F ++ +D ++W + +K
Sbjct: 3 HRPILQAGLPANASTVVGGDVEFVCKVY--SDAQPHIQWIKHVEKNGSKYGPDGLPYLKV 60
Query: 541 HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589
D I +L I E++G Y C A N G A L +
Sbjct: 61 LKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 53.8 bits (128), Expect = 2e-09
Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 15/107 (14%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI-------------F 348
P + + + G F C + +D + ++W + +
Sbjct: 3 HRPILQAGLPANASTVVGGDVEFVCKVY--SDAQPHIQWIKHVEKNGSKYGPDGLPYLKV 60
Query: 349 HKNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
K +D V+ I V D+GEY C A N G F A +
Sbjct: 61 LKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLT 107
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 49.6 bits (117), Expect = 4e-08
Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 15/108 (13%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS------------ 249
P + ++ G F + D ++++ + + +
Sbjct: 4 RPILQAGLPANASTVVGGDVEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL 61
Query: 250 -HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 296
+ VL I ED G YTC A N G + S L +
Sbjct: 62 KAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 49.6 bits (117), Expect = 4e-08
Identities = 18/108 (16%), Positives = 32/108 (29%), Gaps = 15/108 (13%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS------------ 738
P + ++ G F + D ++++ + + +
Sbjct: 4 RPILQAGLPANASTVVGGDVEFVCKV--YSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL 61
Query: 739 -HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785
+ VL I ED G YTC A N G + S L +
Sbjct: 62 KAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 48.1 bits (113), Expect = 2e-07
Identities = 22/106 (20%), Positives = 34/106 (32%), Gaps = 15/106 (14%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLE-------------L 111
+P+ L + +V +D I+WI + + L
Sbjct: 4 RPILQAGLPANASTVVGGDVEFVCKVY--SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVL 61
Query: 112 GSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
+ T D L + V D G YTC A N G +F S +
Sbjct: 62 KAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLT 107
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Score = 45.0 bits (105), Expect = 2e-06
Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 21/98 (21%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLP-------------HGHRYRTFHDF 624
G DV C ++ P ++W + +K D
Sbjct: 20 GGDVE---FVCKVYSD-----AQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDK 71
Query: 625 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 662
I +L I E++G Y C A N G A L +
Sbjct: 72 EIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 54.5 bits (130), Expect = 7e-10
Identities = 27/100 (27%), Positives = 39/100 (39%), Gaps = 5/100 (5%)
Query: 303 PPKFTSHIKSLEGLKD-GDSAHFECTLTPVNDPELKVEWFHNGKPI--FHKNRVKMVSDF 359
PP + + + G S C PE + W +G+PI ++ K +
Sbjct: 3 PPTVQARQSIVNATANLGQSVTLVCDAD--GFPEPTMSWTKDGEPIENEEEDDEKHIFSD 60
Query: 360 GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGK 399
+ I V +D EYVC A NK GE +K F K
Sbjct: 61 DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 100
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.2 bits (124), Expect = 5e-09
Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 202 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
PP + Q + N + G+ G T+ + +G+PIE H F
Sbjct: 3 PPTVQAR-QSIVNATANLGQSVTLVCDA--DGFPEPTMSWTKDGEPIENEEEDDEKHIFS 59
Query: 260 MV--VLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
L I D Y C A NK G+ + S++L+ K
Sbjct: 60 DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 100
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 51.4 bits (122), Expect = 9e-09
Identities = 18/97 (18%), Positives = 26/97 (26%), Gaps = 1/97 (1%)
Query: 496 PKFITQISDVTQ-LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIV 554
P + S V GQS +P + + +
Sbjct: 4 PTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSS 63
Query: 555 ILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSK 591
L I + + Y C A NK G LK +K
Sbjct: 64 ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 100
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 49.9 bits (118), Expect = 3e-08
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 691 PPQFTSEFQHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
PP + Q + N + G+ G T+ + +G+PIE H F
Sbjct: 3 PPTVQAR-QSIVNATANLGQSVTLVCDA--DGFPEPTMSWTKDGEPIENEEEDDEKHIFS 59
Query: 749 MV--VLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
L I D Y C A NK G+ + S++L+
Sbjct: 60 DDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 96
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 46.4 bits (109), Expect = 5e-07
Identities = 23/94 (24%), Positives = 32/94 (34%), Gaps = 10/94 (10%)
Query: 573 ATNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFG--IVILD 630
AT G VT L C + P + W +G+ + + H F L
Sbjct: 15 ATANLGQSVT---LVCDADGF-----PEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELT 66
Query: 631 ILYCYEENSGVYECRATNKYGSDVTKASLKCVSK 664
I + + Y C A NK G LK +K
Sbjct: 67 IRNVDKNDEAEYVCIAENKAGEQDASIHLKVFAK 100
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.6 bits (94), Expect = 7e-05
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 82 QPLHLEAQVEPKNDPNLKIEWIFNGKPLELG--SRFKTTADFGFVTLDLTEVYDRDQGIY 139
Q + L + P + W +G+P+E K L + V D+ Y
Sbjct: 21 QSVTLVCDAD--GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEY 78
Query: 140 TCRAWNLAGETFTSTTI 156
C A N AGE S +
Sbjct: 79 VCIAENKAGEQDASIHL 95
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.2 bits (129), Expect = 7e-10
Identities = 12/91 (13%), Positives = 32/91 (35%), Gaps = 8/91 (8%)
Query: 301 GQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG 360
G P K T + G C++ + +P+++ + + +
Sbjct: 1 GAPVKLT--------VSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHW 52
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTR 391
+ + V+ D+G Y C+ + + ++
Sbjct: 53 IGFLSLKSVERSDAGRYWCQVEDGGETEISQ 83
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.3 bits (124), Expect = 4e-09
Identities = 10/81 (12%), Positives = 28/81 (34%), Gaps = 1/81 (1%)
Query: 503 SDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCY 562
+T + +GQ + + +PD+ + I L +
Sbjct: 4 VKLT-VSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 62
Query: 563 EENSGVYECRATNKYGSDVTK 583
++G Y C+ + +++++
Sbjct: 63 RSDAGRYWCQVEDGGETEISQ 83
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 7e-05
Identities = 9/73 (12%), Positives = 20/73 (27%)
Query: 216 SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGV 275
S+G+ S+ + + + I + L + + D G
Sbjct: 9 SQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGR 68
Query: 276 YTCRATNKWGQAE 288
Y C+ +
Sbjct: 69 YWCQVEDGGETEI 81
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 7e-05
Identities = 9/73 (12%), Positives = 20/73 (27%)
Query: 705 SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGV 764
S+G+ S+ + + + I + L + + D G
Sbjct: 9 SQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGR 68
Query: 765 YTCRATNKWGQAE 777
Y C+ +
Sbjct: 69 YWCQVEDGGETEI 81
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 8e-05
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 1/78 (1%)
Query: 80 EAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIY 139
+ QP+ L VE +P+++ + L L V D G Y
Sbjct: 10 QGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRY 69
Query: 140 TCRAWNLAGETFTSTTIY 157
C+ + S ++
Sbjct: 70 WCQVEDGGETE-ISQPVW 86
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (86), Expect = 6e-04
Identities = 5/52 (9%), Positives = 16/52 (30%)
Query: 605 WFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 656
+ I L + ++G Y C+ + +++++
Sbjct: 32 KDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQ 83
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 53.5 bits (127), Expect = 1e-09
Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 3/91 (3%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGI 553
+ P Q ++V +E E + V + K + +
Sbjct: 1 KYPVLKDQPAEVL-FRENNPTVLECI--IEGNDQGVKYSWKKDGKSYNWQEHNAALRKDE 57
Query: 554 VILDILYCYEENSGVYECRATNKYGSDVTKA 584
L L + G Y+C A G ++
Sbjct: 58 GSLVFLRPQASDEGHYQCFAETPAGVASSRV 88
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 51.2 bits (121), Expect = 9e-09
Identities = 11/92 (11%), Positives = 24/92 (26%), Gaps = 3/92 (3%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
+ P + ++ + EC + + + ++
Sbjct: 1 KYPVLKDQPAEVL-FRENNPTVLECI--IEGNDQGVKYSWKKDGKSYNWQEHNAALRKDE 57
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGEDFTRAT 393
+ Q+ D G Y C A G +R
Sbjct: 58 GSLVFLRPQASDEGHYQCFAETPAGVASSRVI 89
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 42.3 bits (98), Expect = 1e-05
Identities = 17/87 (19%), Positives = 24/87 (27%), Gaps = 3/87 (3%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGM 260
+ P + + E E I DQ + + +GK
Sbjct: 1 KYPVLKDQPAEVL-FRENNPTVLECI-IEGNDQGVKYSWKKDGKSYN-WQEHNAALRKDE 57
Query: 261 VVLEILGTKIEDTGVYTCRATNKWGQA 287
L L + D G Y C A G A
Sbjct: 58 GSLVFLRPQASDEGHYQCFAETPAGVA 84
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 42.3 bits (98), Expect = 1e-05
Identities = 17/87 (19%), Positives = 24/87 (27%), Gaps = 3/87 (3%)
Query: 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGM 749
+ P + + E E I DQ + + +GK
Sbjct: 1 KYPVLKDQPAEVL-FRENNPTVLECI-IEGNDQGVKYSWKKDGKSYN-WQEHNAALRKDE 57
Query: 750 VVLEILGTKIEDTGVYTCRATNKWGQA 776
L L + D G Y C A G A
Sbjct: 58 GSLVFLRPQASDEGHYQCFAETPAGVA 84
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 37.7 bits (86), Expect = 6e-04
Identities = 15/91 (16%), Positives = 20/91 (21%), Gaps = 3/91 (3%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFV 124
PV E E P LE + +
Sbjct: 2 YPVLKDQPA-EVLFRENNPTVLE--CIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG 58
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTSTT 155
+L D+G Y C A AG +
Sbjct: 59 SLVFLRPQASDEGHYQCFAETPAGVASSRVI 89
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 36.2 bits (82), Expect = 0.002
Identities = 8/53 (15%), Positives = 15/53 (28%)
Query: 605 WFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 657
+ K + + L L + G Y+C A G ++
Sbjct: 36 SWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRV 88
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.9 bits (128), Expect = 2e-09
Identities = 21/101 (20%), Positives = 31/101 (30%), Gaps = 10/101 (9%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPI--------FHKNRVK 354
PP + + G+ A C+ P + WF +G +
Sbjct: 2 PPSKPTISVPSS-VTIGNRAVLTCSEH-DGSPPSEYSWFKDGISMLTADAKKTRAFMNSS 59
Query: 355 MVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
D + V + DSGEY C+A N YG
Sbjct: 60 FTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAH 100
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.0 bits (118), Expect = 4e-08
Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 10/104 (9%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT------- 743
PP + S+++ G A S G + +G + + +T
Sbjct: 2 PPSKPT-ISVPSSVTIGNRAVLTCS-EHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSS 59
Query: 744 -VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786
L D+G Y C+A N +G A S
Sbjct: 60 FTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDA 103
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.6 bits (117), Expect = 6e-08
Identities = 20/106 (18%), Positives = 36/106 (33%), Gaps = 12/106 (11%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT------- 254
PP + S+++ G A S G + +G + + +T
Sbjct: 2 PPSKPT-ISVPSSVTIGNRAVLTCS-EHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSS 59
Query: 255 -VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS--VNLECVD 297
L D+G Y C+A N +G A S +++ V+
Sbjct: 60 FTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 105
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.5 bits (109), Expect = 6e-07
Identities = 20/100 (20%), Positives = 30/100 (30%), Gaps = 9/100 (9%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTF------- 548
P IS + + G A P WF +G + +T
Sbjct: 2 PPSKPTISVPSSVTIGNRAVLTCSEH-DGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 60
Query: 549 -HDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
D L +SG Y C+A N YG+ + +
Sbjct: 61 TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAH 100
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.5 bits (101), Expect = 8e-06
Identities = 23/101 (22%), Positives = 29/101 (28%), Gaps = 13/101 (12%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT------- 117
KP VP +G L P + W +G + KT
Sbjct: 5 KPTISVP--SSVTIGN--RAVLTCSE-HDGSPPSEYSWFKDGISMLTADAKKTRAFMNSS 59
Query: 118 -TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
T D L V D G Y C+A N G S +
Sbjct: 60 FTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAH 100
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 39.6 bits (91), Expect = 2e-04
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Query: 601 PEVEWFYNGKKLPHGHRYRTF--------HDFGIVILDILYCYEENSGVYECRATNKYGS 652
E WF +G + +T D L +SG Y C+A N YG+
Sbjct: 33 SEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT 92
Query: 653 DVTKASLK 660
+ +
Sbjct: 93 AMRSEAAH 100
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Score = 52.1 bits (124), Expect = 4e-09
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 4/83 (4%)
Query: 497 KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVIL 556
+ + V + G++AHFE +++PD+ +W G+ L D IL
Sbjct: 3 EVEKPLYGVE-VFVGETAHFEIE---LSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHIL 58
Query: 557 DILYCYEENSGVYECRATNKYGS 579
+ C +G +A N +
Sbjct: 59 ILHNCQLGMTGEVSFQAANAKSA 81
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Score = 48.3 bits (114), Expect = 8e-08
Identities = 16/83 (19%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 305 KFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVM 364
+ + +E + G++AHFE +++P++ +W G+P+ +++ D ++
Sbjct: 3 EVEKPLYGVE-VFVGETAHFEIE---LSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHIL 58
Query: 365 DIAYVQSHDSGEYVCRAWNKYGE 387
+ Q +GE +A N
Sbjct: 59 ILHNCQLGMTGEVSFQAANAKSA 81
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Score = 44.8 bits (105), Expect = 1e-06
Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 204 QFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVL 263
+ + + GE AHFE + + + ++ G+P+ AS + +L
Sbjct: 3 EVEKPLYGVE-VFVGETAHFEIE---LSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHIL 58
Query: 264 EILGTKIEDTGVYTCRATNKWGQAEISV 291
+ ++ TG + +A N A + V
Sbjct: 59 ILHNCQLGMTGEVSFQAANAKSAANLKV 86
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Score = 44.8 bits (105), Expect = 1e-06
Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 4/88 (4%)
Query: 693 QFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVL 752
+ + + GE AHFE + + + ++ G+P+ AS + +L
Sbjct: 3 EVEKPLYGVE-VFVGETAHFEIE---LSEPDVHGQWKLKGQPLTASPDCEIIEDGKKHIL 58
Query: 753 EILGTKIEDTGVYTCRATNKWGQAEISV 780
+ ++ TG + +A N A + V
Sbjct: 59 ILHNCQLGMTGEVSFQAANAKSAANLKV 86
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Score = 37.1 bits (85), Expect = 8e-04
Identities = 10/52 (19%), Positives = 16/52 (30%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 652
+W G+ L D IL + C +G +A N +
Sbjct: 30 VHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAKSA 81
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.6 bits (125), Expect = 4e-09
Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 8/96 (8%)
Query: 308 SHIKSLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKM-------VSDF 359
SH+ + L H C V+ P + W NG + + +
Sbjct: 1 SHMPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60
Query: 360 GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + ++G Y A N +G+
Sbjct: 61 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAA 96
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.8 bits (115), Expect = 8e-08
Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 8/106 (7%)
Query: 207 SEFQHLSNLSEGEIAHFEASLIPV-GDQTMTVEFLYNGKPIEASHRIRT-------VHAF 258
S L H V G ++ +L+NG + + I T
Sbjct: 1 SHMPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPP 304
L + + G YT A N +GQA S+ +D P
Sbjct: 61 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNP 106
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.6 bits (112), Expect = 2e-07
Identities = 16/100 (16%), Positives = 24/100 (24%), Gaps = 8/100 (8%)
Query: 500 TQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLP-------HGHRYRTFHDF 551
+ + QL H V P + W +NG L
Sbjct: 1 SHMPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60
Query: 552 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSK 591
L + N+G Y A N +G +
Sbjct: 61 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 100
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.1 bits (108), Expect = 7e-07
Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 9/106 (8%)
Query: 696 SEFQHLSNLSEGEIAHFEASLIPV-GDQTMTVEFLYNGKPIEASHRIRT-------VHAF 747
S L H V G ++ +L+NG + + I T
Sbjct: 1 SHMPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60
Query: 748 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTK 793
L + + G YT A N +GQA S+ + +P +
Sbjct: 61 RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAA-FMDNPFEFN 105
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.8 bits (89), Expect = 3e-04
Identities = 12/71 (16%), Positives = 18/71 (25%), Gaps = 7/71 (9%)
Query: 601 PEVEWFYNGKKLP-------HGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD 653
P + W +NG L L + N+G Y A N +G
Sbjct: 30 PSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA 89
Query: 654 VTKASLKCVSK 664
+
Sbjct: 90 SASIMAAFMDN 100
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (86), Expect = 7e-04
Identities = 20/88 (22%), Positives = 27/88 (30%), Gaps = 8/88 (9%)
Query: 77 KLGEAQPLHLEA-QVEPKNDPNLKIEWIFNGKPLELGSRFKT-------TADFGFVTLDL 128
+L A +H P + W+FNG L S T L L
Sbjct: 8 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL 67
Query: 129 TEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ + G YT A N G+ S
Sbjct: 68 NQPTHVNNGNYTLLAANPFGQASASIMA 95
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.3 bits (124), Expect = 4e-09
Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 3/91 (3%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTF-HDFG 552
P F +I +V + GQ A F+ T + + +
Sbjct: 1 RTPHF-LRIQNVE-VNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRF 58
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTK 583
I +++ + ++G Y C + G ++
Sbjct: 59 IASFNVVNTTKRDAGKYRCMIRTEGGVGISN 89
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.9 bits (110), Expect = 4e-07
Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 3/91 (3%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVS-DFG 360
+ P F I+++E + G A F+C+ ++ +K+ S
Sbjct: 1 RTPHFL-RIQNVE-VNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRF 58
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGEDFTR 391
++ D+G+Y C + G +
Sbjct: 59 IASFNVVNTTKRDAGKYRCMIRTEGGVGISN 89
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 8e-05
Identities = 15/91 (16%), Positives = 24/91 (26%), Gaps = 9/91 (9%)
Query: 201 RPPQFTSEFQHLSNLS--EGEIA--HFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 256
R P F + N+ G+ A A V + + T
Sbjct: 1 RTPHFL----RIQNVEVNAGQFATFQCSAIGRTVA-GDRLWLQGIDVRDAPLKEIKVTSS 55
Query: 257 AFGMVVLEILGTKIEDTGVYTCRATNKWGQA 287
+ ++ T D G Y C + G
Sbjct: 56 RRFIASFNVVNTTKRDAGKYRCMIRTEGGVG 86
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 8e-05
Identities = 15/91 (16%), Positives = 24/91 (26%), Gaps = 9/91 (9%)
Query: 690 RPPQFTSEFQHLSNLS--EGEIA--HFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH 745
R P F + N+ G+ A A V + + T
Sbjct: 1 RTPHFL----RIQNVEVNAGQFATFQCSAIGRTVA-GDRLWLQGIDVRDAPLKEIKVTSS 55
Query: 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQA 776
+ ++ T D G Y C + G
Sbjct: 56 RRFIASFNVVNTTKRDAGKYRCMIRTEGGVG 86
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (91), Expect = 1e-04
Identities = 13/90 (14%), Positives = 24/90 (26%), Gaps = 3/90 (3%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKP-LELGSRFKTTADFGFV 124
P F+ E G+ A ++ L T++
Sbjct: 3 PHFLRIQNVEVNAGQFATFQCSAIGRTV--AGDRLWLQGIDVRDAPLKEIKVTSSRRFIA 60
Query: 125 TLDLTEVYDRDQGIYTCRAWNLAGETFTST 154
+ ++ RD G Y C G ++
Sbjct: 61 SFNVVNTTKRDAGKYRCMIRTEGGVGISNY 90
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.5 bits (83), Expect = 0.002
Identities = 7/52 (13%), Positives = 18/52 (34%)
Query: 605 WFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTK 656
+ + P T I +++ + ++G Y C + G ++
Sbjct: 38 QGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISN 89
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 51.1 bits (121), Expect = 1e-08
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 495 APKFITQISDVTQL--KEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG 552
P F Q + + R +P W NG +L G R
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARA--NPPATYRWKMNGTELKMGPDSRYRLVA- 60
Query: 553 IVILDILYCYEENSGVYECRATNKYGSDVTK-ASLK 587
++ +++G Y+C ATN G+ V++ ASL+
Sbjct: 61 GDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR 96
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 47.2 bits (111), Expect = 3e-07
Identities = 19/97 (19%), Positives = 32/97 (32%), Gaps = 8/97 (8%)
Query: 303 PPKFTSHIKSL---EGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDF 359
P F EG + C +P W NG + +
Sbjct: 4 GPVFEEQPAHTLFPEG-SAEEKVTLTCRAR--ANPPATYRWKMNGTELKMGPDSRYRLVA 60
Query: 360 GFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTR-ATIK 395
++ V++ D+G Y C A N G +R A+++
Sbjct: 61 -GDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR 96
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 41.8 bits (97), Expect = 2e-05
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 574 TNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILY 633
GS K +L C ++ N W NG +L G R ++
Sbjct: 15 LFPEGSAEEKVTLTCRARAN-----PPATYRWKMNGTELKMGPDSRYRLVA-GDLVISNP 68
Query: 634 CYEENSGVYECRATNKYGSDVTK-ASLK 660
+++G Y+C ATN G+ V++ ASL+
Sbjct: 69 VKAKDAGSYQCVATNARGTVVSREASLR 96
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 41.0 bits (95), Expect = 4e-05
Identities = 20/92 (21%), Positives = 30/92 (32%), Gaps = 5/92 (5%)
Query: 65 KPVFIVPLKP-EFKLG-EAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFG 122
PVF F G + + L + +P W NG L++G +
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRAR--ANPPATYRWKMNGTELKMGPDSRYRLVA- 60
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAGETFTST 154
+ V +D G Y C A N G +
Sbjct: 61 GDLVISNPVKAKDAGSYQCVATNARGTVVSRE 92
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 39.9 bits (92), Expect = 8e-05
Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 5/88 (5%)
Query: 202 PPQFTSEFQHLSNL--SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
P F + H S E + T + NG ++ R
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCR--ARANPPATYRWKMNGTELKMGPDSRYRLVA- 60
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQA 287
++ K +D G Y C ATN G
Sbjct: 61 GDLVISNPVKAKDAGSYQCVATNARGTV 88
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 39.9 bits (92), Expect = 8e-05
Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 5/88 (5%)
Query: 691 PPQFTSEFQHLSNL--SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
P F + H S E + T + NG ++ R
Sbjct: 4 GPVFEEQPAHTLFPEGSAEEKVTLTCR--ARANPPATYRWKMNGTELKMGPDSRYRLVA- 60
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQA 776
++ K +D G Y C ATN G
Sbjct: 61 GDLVISNPVKAKDAGSYQCVATNARGTV 88
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.7 bits (120), Expect = 2e-08
Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 13/106 (12%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKM-----V 356
P T L+ S H C V +P+ ++WF+NG + +
Sbjct: 4 APTITF-------LESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTN 56
Query: 357 SDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGGV 402
+ + ++G+Y A N+YG+D + + G G+
Sbjct: 57 HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI 102
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (112), Expect = 2e-07
Identities = 24/93 (25%), Positives = 34/93 (36%), Gaps = 6/93 (6%)
Query: 505 VTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTF-----HDFGIVILDI 558
+T L+ S H V +P ++WFYNG L T H L +
Sbjct: 7 ITFLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQL 66
Query: 559 LYCYEENSGVYECRATNKYGSDVTKASLKCVSK 591
N+G Y A N+YG D + S +
Sbjct: 67 DNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGW 99
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (88), Expect = 3e-04
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 601 PEVEWFYNGKKLPHGHRYRTF-----HDFGIVILDILYCYEENSGVYECRATNKYGSDVT 655
P ++WFYNG L T H L + N+G Y A N+YG D
Sbjct: 31 PALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEK 90
Query: 656 KASLKCVSK 664
+ S +
Sbjct: 91 QISAHFMGW 99
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 50.3 bits (119), Expect = 2e-08
Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 4/92 (4%)
Query: 304 PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVV 363
F + E K+G+ A C + + + W H G+ + K V+ +
Sbjct: 2 LMFKNAPTPQE-FKEGEDAVIVCDVV--SSLPPTIIWKHKGRDVILKKDVRFIVLS-NNY 57
Query: 364 MDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ I ++ D G Y C + I+
Sbjct: 58 LQIRGIKKTDEGTYRCEGRILARGEINFKDIQ 89
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 44.9 bits (105), Expect = 1e-06
Identities = 12/92 (13%), Positives = 26/92 (28%), Gaps = 4/92 (4%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
F + KEG+ A + + W + G+ + R +
Sbjct: 2 LMFKNAPTPQE-FKEGEDAVIVCDVVS--SLPPTIIWKHKGRDVILKKDVRFIVLSNNYL 58
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTKASLK 587
I + + G Y C ++ ++
Sbjct: 59 Q-IRGIKKTDEGTYRCEGRILARGEINFKDIQ 89
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.1 bits (95), Expect = 3e-05
Identities = 17/95 (17%), Positives = 31/95 (32%), Gaps = 4/95 (4%)
Query: 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV 751
F + EGE A + V T+ + + G+ + +R + +
Sbjct: 2 LMFKNAPTPQE-FKEGEDAVIVCDV--VSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL 58
Query: 752 LEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786
I G K D G Y C +++ +V
Sbjct: 59 Q-IRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 92
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.7 bits (94), Expect = 4e-05
Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 6/93 (6%)
Query: 65 KPVFIVPLKP-EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGF 123
K +F P EFK G + + V + I W G+ + L +
Sbjct: 1 KLMFKNAPTPQEFKEG--EDAVIVCDVV--SSLPPTIIWKHKGRDVILKKDVRFIVLSNN 56
Query: 124 VTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ + D+G Y C LA I
Sbjct: 57 YLQ-IRGIKKTDEGTYRCEGRILARGEINFKDI 88
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.1 bits (90), Expect = 2e-04
Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 4/92 (4%)
Query: 203 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV 262
F + EGE A + V T+ + + G+ + +R + +
Sbjct: 2 LMFKNAPTPQE-FKEGEDAVIVCDV--VSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYL 58
Query: 263 LEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
I G K D G Y C +++
Sbjct: 59 Q-IRGIKKTDEGTYRCEGRILARGEINFKDIQ 89
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 50.2 bits (119), Expect = 2e-08
Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 8/92 (8%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIV 554
AP + T GQ E +P ++W + +
Sbjct: 4 APSIKAKFPADTYALTGQMVTLECFAF--GNPVPQIKWRKL----DGSQTSKWLSSEPL- 56
Query: 555 ILDILYCYEENSGVYECRATNKYGSDVTKASL 586
L I E+ G YEC A N G D + +
Sbjct: 57 -LHIQNVDFEDEGTYECEAENIKGRDTYQGRI 87
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 49.8 bits (118), Expect = 2e-08
Identities = 18/92 (19%), Positives = 27/92 (29%), Gaps = 8/92 (8%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P + + G EC +P +++W K
Sbjct: 4 APSIKAKFPADTYALTGQMVTLECFAF--GNPVPQIKWRKLDGSQTSKWLSSEP------ 55
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATI 394
++ I V D G Y C A N G D + I
Sbjct: 56 LLHIQNVDFEDEGTYECEAENIKGRDTYQGRI 87
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 47.1 bits (111), Expect = 2e-07
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 8/92 (8%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
P ++F + G++ E G+ +++ +
Sbjct: 4 APSIKAKFPADTYALTGQMVTLECF--AFGNPVPQIKWRKL------DGSQTSKWLSSEP 55
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
+L I ED G Y C A N G+ +
Sbjct: 56 LLHIQNVDFEDEGTYECEAENIKGRDTYQGRI 87
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 47.1 bits (111), Expect = 2e-07
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 8/92 (8%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
P ++F + G++ E G+ +++ +
Sbjct: 4 APSIKAKFPADTYALTGQMVTLECF--AFGNPVPQIKWRKL------DGSQTSKWLSSEP 55
Query: 751 VLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+L I ED G Y C A N G+ +
Sbjct: 56 LLHIQNVDFEDEGTYECEAENIKGRDTYQGRI 87
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 41.0 bits (95), Expect = 3e-05
Identities = 17/91 (18%), Positives = 26/91 (28%), Gaps = 8/91 (8%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVT 125
P + Q + LE +P +I+W +
Sbjct: 5 PSIKAKFPADTYALTGQMVTLECFAF--GNPVPQIKWRKLDGS------QTSKWLSSEPL 56
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
L + V D+G Y C A N+ G I
Sbjct: 57 LHIQNVDFEDEGTYECEAENIKGRDTYQGRI 87
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 39.0 bits (90), Expect = 2e-04
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 14/82 (17%)
Query: 578 GSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEE 637
G VT L+C + N +P+++W + + L I E
Sbjct: 20 GQMVT---LECFAFGN-----PVPQIKWRKL----DGSQTSKWLSSEPL--LHIQNVDFE 65
Query: 638 NSGVYECRATNKYGSDVTKASL 659
+ G YEC A N G D + +
Sbjct: 66 DEGTYECEAENIKGRDTYQGRI 87
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.6 bits (122), Expect = 2e-08
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 4/106 (3%)
Query: 290 SVNLECVDKSKGQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFH 349
+ L+ G P + I + + P + + F
Sbjct: 26 KLRLDV--PISGDPA--PTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCET 81
Query: 350 KNRVKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ RV++ + + + + D G Y N GED T+K
Sbjct: 82 EGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 127
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.5 bits (119), Expect = 4e-08
Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 2/99 (2%)
Query: 199 DGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF 258
G P + ++ ++ A P E R+R
Sbjct: 34 SGDPAPTVIWQKAITQGNKAP--ARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTK 91
Query: 259 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVD 297
+ + G + ED GVYT N G+ ++++ ++ +D
Sbjct: 92 DRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 130
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.8 bits (112), Expect = 3e-07
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 2/96 (2%)
Query: 688 DGRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF 747
G P + ++ ++ A P E R+R
Sbjct: 34 SGDPAPTVIWQKAITQGNKAP--ARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTK 91
Query: 748 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
+ + G + ED GVYT N G+ ++++ ++
Sbjct: 92 DRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 127
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.8 bits (112), Expect = 4e-07
Identities = 21/127 (16%), Positives = 32/127 (25%), Gaps = 35/127 (27%)
Query: 494 EAPKFI----TQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPH-------- 541
E PK +I D + G + ++ DP V W +
Sbjct: 3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPIS--GDPAPTVIWQKAITQGNKAPARPAPD 60
Query: 542 ---------------------GHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD 580
R R I + +E+ GVY N G D
Sbjct: 61 APEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGED 120
Query: 581 VTKASLK 587
++K
Sbjct: 121 QVNLTVK 127
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 3e-05
Identities = 11/66 (16%), Positives = 20/66 (30%)
Query: 91 EPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGET 150
P++ + E R + + D+G+YT N GE
Sbjct: 61 APEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGED 120
Query: 151 FTSTTI 156
+ T+
Sbjct: 121 QVNLTV 126
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.6 bits (115), Expect = 7e-08
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 305 KFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFH--KNRVKMVSDFGFV 362
T ++ G+ EC V++ + V+WF NG+ I K+R ++ +
Sbjct: 2 MVTKQLEDTT-AYCGERVELECE---VSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKH 57
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGE 387
++ I D+ EY
Sbjct: 58 ILIIEGATKADAAEYSVMTTGGQSS 82
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (111), Expect = 2e-07
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 497 KFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG--HRYRTFHDFGIV 554
Q+ D T G+ E V++ D V+WF NG+++ G RYR +
Sbjct: 2 MVTKQLEDTT-AYCGERVELECE---VSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKH 57
Query: 555 ILDILYCYEENSGVYECRATNKYGS 579
IL I + ++ Y T S
Sbjct: 58 ILIIEGATKADAAEYSVMTTGGQSS 82
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (111), Expect = 2e-07
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 210 QHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTVHAFGMVVLEI 265
+ L + + GE E V + V++ NG+ I R R +L I
Sbjct: 5 KQLEDTTAYCGERVELECE---VSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILII 61
Query: 266 LGTKIEDTGVYTCRATNKWGQAEISVNL 293
G D Y+ T A++SV+L
Sbjct: 62 EGATKADAAEYSVMTTGGQSSAKLSVDL 89
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (111), Expect = 2e-07
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 699 QHLSNLS--EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTVHAFGMVVLEI 754
+ L + + GE E V + V++ NG+ I R R +L I
Sbjct: 5 KQLEDTTAYCGERVELECE---VSEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILII 61
Query: 755 LGTKIEDTGVYTCRATNKWGQAEISVNL 782
G D Y+ T A++SV+L
Sbjct: 62 EGATKADAAEYSVMTTGGQSSAKLSVDL 89
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (83), Expect = 0.002
Identities = 10/72 (13%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 80 EAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRF--KTTADFGFVTLDLTEVYDRDQG 137
+ + LE +V ++ + ++W NG+ + G + + + L + D
Sbjct: 14 CGERVELECEV---SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAA 70
Query: 138 IYTCRAWNLAGE 149
Y+
Sbjct: 71 EYSVMTTGGQSS 82
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.5 bits (81), Expect = 0.002
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 13/78 (16%)
Query: 578 GSDVTKASLKC-VSKTNLILESQLPEVEWFYNGKKLPHG--HRYRTFHDFGIVILDILYC 634
G V L+C VS+ + V+WF NG+++ G RYR + IL I
Sbjct: 15 GERVE---LECEVSEDD-------ANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGA 64
Query: 635 YEENSGVYECRATNKYGS 652
+ ++ Y T S
Sbjct: 65 TKADAAEYSVMTTGGQSS 82
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.9 bits (115), Expect = 8e-08
Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 7/98 (7%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPH-----GHRYRTFHD 550
P+ S + EG++A + V + + R+
Sbjct: 3 PRVKAVKSSEH-INEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 61
Query: 551 FGIVILDILY-CYEENSGVYECRATNKYGSDVTKASLK 587
G L I E + G Y C T+ GSD +L+
Sbjct: 62 QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 99
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.5 bits (114), Expect = 9e-08
Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 9/100 (9%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKN------RVKMV 356
PP+ + S + +G++A C P W+ R +
Sbjct: 2 PPRVKAVKSSEH-INEGETAMLVCKSES-VPPVTDWAWYKITDSEDKALMNGSESRFFVS 59
Query: 357 SDFGFVVMDIAYVQSHD-SGEYVCRAWNKYGEDFTRATIK 395
S G + I + G+Y C + G D T++
Sbjct: 60 SSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 99
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 6e-06
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 7/99 (7%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASL-----IPVGDQTMTVEFLYNGKPIEASHRIRTVH 256
PP+ + +++EGE A + + + R
Sbjct: 2 PPRVKAVKSSE-HINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS 60
Query: 257 AFGMVVLEILG-TKIEDTGVYTCRATNKWGQAEISVNLE 294
+ G L I D G Y C T+ G + + L
Sbjct: 61 SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 99
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 6e-06
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 7/99 (7%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASL-----IPVGDQTMTVEFLYNGKPIEASHRIRTVH 745
PP+ + +++EGE A + + + R
Sbjct: 2 PPRVKAVKSSE-HINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS 60
Query: 746 AFGMVVLEILG-TKIEDTGVYTCRATNKWGQAEISVNLE 783
+ G L I D G Y C T+ G + + L
Sbjct: 61 SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLR 99
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.0 bits (92), Expect = 8e-05
Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 6/86 (6%)
Query: 578 GSDVTKASLKCVSKTN--LILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILY-C 634
G L C S++ + + + R+ G L I
Sbjct: 17 GETAM---LVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLN 73
Query: 635 YEENSGVYECRATNKYGSDVTKASLK 660
E + G Y C T+ GSD +L+
Sbjct: 74 MEADPGQYRCNGTSSKGSDQAIITLR 99
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.3 bits (111), Expect = 3e-07
Identities = 12/87 (13%), Positives = 22/87 (25%), Gaps = 3/87 (3%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
PP+ + G S EC + V L + F + + ++ K
Sbjct: 1 PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQE 60
Query: 362 VVMDIAY--VQSHDSGEYVCRAWNKYG 386
+ + C A
Sbjct: 61 ATATFNSTADREDGHRNFSCLAVLDLM 87
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.5 bits (109), Expect = 6e-07
Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 3/87 (3%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRT--FHDFG 552
P+ + T + G+S E R+ V L + F + L + +
Sbjct: 2 PRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEA 61
Query: 553 IVILDILYCYEENSGVYECRATNKYGS 579
+ E+ + C A S
Sbjct: 62 TATFNSTADREDGHRNFSCLAVLDLMS 88
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (95), Expect = 4e-05
Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 4/86 (4%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEP-KNDPNLKIEWIFNGKPLELGSRFKTT--ADFG 122
I+ L+P + + +E +V + +L + + L + K
Sbjct: 3 RQVILTLQPTL-VAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEA 61
Query: 123 FVTLDLTEVYDRDQGIYTCRAWNLAG 148
T + T + ++C A
Sbjct: 62 TATFNSTADREDGHRNFSCLAVLDLM 87
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.001
Identities = 9/95 (9%), Positives = 27/95 (28%), Gaps = 3/95 (3%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPV-GDQTMTVEFLYNGKPIEASHRIRTVHAFGM 260
PP+ + ++ G+ E + V ++T+ + + + A
Sbjct: 1 PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQE 60
Query: 261 V--VLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
+ + ++C A ++
Sbjct: 61 ATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFH 95
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.001
Identities = 9/95 (9%), Positives = 27/95 (28%), Gaps = 3/95 (3%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPV-GDQTMTVEFLYNGKPIEASHRIRTVHAFGM 749
PP+ + ++ G+ E + V ++T+ + + + A
Sbjct: 1 PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQE 60
Query: 750 V--VLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+ + ++C A ++
Sbjct: 61 ATATFNSTADREDGHRNFSCLAVLDLMSRGGNIFH 95
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (110), Expect = 3e-07
Identities = 13/103 (12%), Positives = 26/103 (25%), Gaps = 11/103 (10%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEW----------FYNGKKLPHGHRY 545
P ++ ++ ++ G +T +W +
Sbjct: 2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61
Query: 546 RTFHDFGIVILDILYCYEENSGV-YECRATNKYGSDVTKASLK 587
I +L+I + C A N +G D L
Sbjct: 62 NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI 104
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 6e-06
Identities = 17/108 (15%), Positives = 29/108 (26%), Gaps = 15/108 (13%)
Query: 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR--------- 742
P S + G + G + + +NG I+ +
Sbjct: 2 PVIVSPANETMEVDLGSQIQLICN--VTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVEN 59
Query: 743 ---TVHAFGMVVLEILGTKIEDTGV-YTCRATNKWGQAEISVNLECVV 786
+ + VL I + +TC A N G + L V
Sbjct: 60 PANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 107
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 7e-06
Identities = 16/104 (15%), Positives = 28/104 (26%), Gaps = 15/104 (14%)
Query: 203 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR--------- 253
P S + G + G + + +NG I+ +
Sbjct: 2 PVIVSPANETMEVDLGSQIQLICN--VTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVEN 59
Query: 254 ---TVHAFGMVVLEILGTKIEDTGV-YTCRATNKWGQAEISVNL 293
+ + VL I + +TC A N G + L
Sbjct: 60 PANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 103
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 3e-04
Identities = 18/105 (17%), Positives = 30/105 (28%), Gaps = 15/105 (14%)
Query: 304 PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDF---- 359
P S + G C +T W NG I + V +
Sbjct: 2 PVIVSPANETMEVDLGSQIQLICNVT--GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVEN 59
Query: 360 --------GFVVMDIAYVQSHDSG-EYVCRAWNKYGEDFTRATIK 395
V++I+ ++S + C A N +G D +
Sbjct: 60 PANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLI 104
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.001
Identities = 15/105 (14%), Positives = 30/105 (28%), Gaps = 15/105 (14%)
Query: 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK-------- 116
+PV + P ++ + L + W +NG ++
Sbjct: 1 RPVIVSPANETMEVDLGSQIQLICN--VTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVE 58
Query: 117 ----TTADFGFVTLDLTEVYDRDQGI-YTCRAWNLAGETFTSTTI 156
L+++E+ R +TC A N G +
Sbjct: 59 NPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQL 103
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 46.5 bits (109), Expect = 4e-07
Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 6/93 (6%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P T + + ++ G F CT P + W +
Sbjct: 1 PIMVTVEEQRSQSVRPGADVTFICT-AKSKSPAYTLVWTRLHNGKLPSRAMDFNG----- 54
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
++ I VQ D+G YVC N + D AT+
Sbjct: 55 ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 87
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.7 bits (107), Expect = 7e-07
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 6/93 (6%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
P T E Q ++ G F + T+ + S +
Sbjct: 1 PIMVTVEEQRSQSVRPGADVTFICT-AKSKSPAYTLVWTRLHNGKLPSRAMDFNG----- 54
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+L I + D G Y C +N + + + L
Sbjct: 55 ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 87
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.7 bits (107), Expect = 7e-07
Identities = 16/93 (17%), Positives = 28/93 (30%), Gaps = 6/93 (6%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
P T E Q ++ G F + T+ + S +
Sbjct: 1 PIMVTVEEQRSQSVRPGADVTFICT-AKSKSPAYTLVWTRLHNGKLPSRAMDFNG----- 54
Query: 751 VLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
+L I + D G Y C +N + + + L
Sbjct: 55 ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 87
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 44.2 bits (103), Expect = 2e-06
Identities = 14/92 (15%), Positives = 23/92 (25%), Gaps = 6/92 (6%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
+ ++ G F P + W I
Sbjct: 2 IMVTVEEQRSQSVRPGADVTFICT-AKSKSPAYTLVWTRLHNGKLPSRAMDFNG-----I 55
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L I ++G Y C +N + D A+L
Sbjct: 56 LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 87
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.3 bits (85), Expect = 8e-04
Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 5/60 (8%)
Query: 601 PEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
+ W IL I ++G Y C +N + D A+L
Sbjct: 33 YTLVWTRLHNGKLPSRAMDFNG-----ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 87
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.1 bits (82), Expect = 0.002
Identities = 11/92 (11%), Positives = 21/92 (22%), Gaps = 6/92 (6%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVT 125
+ V + + + P + W
Sbjct: 2 IMVTVEEQRSQSVRPGADVTFICTA-KSKSPAYTLVWTRLHNGKLPSRAMDFNG-----I 55
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTSTTIY 157
L + V D G Y C N+ + T++
Sbjct: 56 LTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH 87
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 8e-07
Identities = 16/103 (15%), Positives = 28/103 (27%), Gaps = 11/103 (10%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLT---PVNDPELKVE-------WFHNGKPIFHKNR 352
F + E + G S F + + P +K G+ + +
Sbjct: 4 IGLFVMRPQDGE-VTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62
Query: 353 VKMVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
S + I Q +G Y C K D + +
Sbjct: 63 YDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLT 105
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.8 bits (107), Expect = 1e-06
Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 11/103 (10%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLT---PVTDPDLVVE-------WFYNGKKLPHGHR 544
F+ + D + G S F AR+ + P + G+ L
Sbjct: 4 IGLFVMRPQDGE-VTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62
Query: 545 YRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
Y + L I +G Y C + K D + +L
Sbjct: 63 YDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLT 105
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 1e-05
Identities = 15/103 (14%), Positives = 26/103 (25%), Gaps = 11/103 (10%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASL----------IPVGDQTMTVEFLYNGKPIEASHR 251
F Q ++ G F A + + G+ ++
Sbjct: 4 IGLFVMRPQDGE-VTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62
Query: 252 IRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
+ L I + TG Y C + K + NL
Sbjct: 63 YDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLT 105
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 1e-05
Identities = 15/103 (14%), Positives = 26/103 (25%), Gaps = 11/103 (10%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASL----------IPVGDQTMTVEFLYNGKPIEASHR 740
F Q ++ G F A + + G+ ++
Sbjct: 4 IGLFVMRPQDGE-VTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62
Query: 741 IRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
+ L I + TG Y C + K + NL
Sbjct: 63 YDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLT 105
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 7e-05
Identities = 11/56 (19%), Positives = 17/56 (30%)
Query: 605 WFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 660
G+ L Y + L I +G Y C + K D + +L
Sbjct: 50 SSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLT 105
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.9 bits (89), Expect = 3e-04
Identities = 11/101 (10%), Positives = 26/101 (25%), Gaps = 9/101 (8%)
Query: 65 KPVFIVPLKP-EFKLGEAQPLHLEAQVEPKND--------PNLKIEWIFNGKPLELGSRF 115
+F++ + E +G + G+ L+L +
Sbjct: 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63
Query: 116 KTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ L +T+ G Y C ++ +
Sbjct: 64 DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNL 104
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.7 bits (107), Expect = 9e-07
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 1/86 (1%)
Query: 216 SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGV 275
S EI L P + T+ + + S + L + K+ED+G
Sbjct: 15 SANEIDVRPCPLNP-NEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGH 73
Query: 276 YTCRATNKWGQAEISVNLECVDKSKG 301
Y C N I ++ + V+
Sbjct: 74 YYCVVRNSSYCLRIKISAKFVENEPN 99
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (101), Expect = 7e-06
Identities = 12/81 (14%), Positives = 22/81 (27%), Gaps = 1/81 (1%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSGEYV 378
+ C L P N+ + + W+ + + + DSG Y
Sbjct: 17 NEIDVRPCPLNP-NEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYY 75
Query: 379 CRAWNKYGEDFTRATIKCFGK 399
C N + + K
Sbjct: 76 CVVRNSSYCLRIKISAKFVEN 96
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (99), Expect = 1e-05
Identities = 16/84 (19%), Positives = 24/84 (28%), Gaps = 1/84 (1%)
Query: 509 KEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGV 568
+ L P + + W+ + K P + L + E+SG
Sbjct: 15 SANEIDVRPCPLNP-NEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGH 73
Query: 569 YECRATNKYGSDVTKASLKCVSKT 592
Y C N K S K V
Sbjct: 74 YYCVVRNSSYCLRIKISAKFVENE 97
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (95), Expect = 4e-05
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 1/86 (1%)
Query: 705 SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGV 764
S EI L P + T+ + + S + L + K+ED+G
Sbjct: 15 SANEIDVRPCPLNP-NEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGH 73
Query: 765 YTCRATNKWGQAEISVNLECVVWSPS 790
Y C N I ++ + V P+
Sbjct: 74 YYCVVRNSSYCLRIKISAKFVENEPN 99
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (90), Expect = 2e-04
Identities = 16/82 (19%), Positives = 22/82 (26%), Gaps = 4/82 (4%)
Query: 584 ASLKCVSKTNLILESQLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYE 643
C N + W+ + K P + L + E+SG Y
Sbjct: 20 DVRPCPLNPN----EHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYY 75
Query: 644 CRATNKYGSDVTKASLKCVSKT 665
C N K S K V
Sbjct: 76 CVVRNSSYCLRIKISAKFVENE 97
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.4 bits (106), Expect = 2e-06
Identities = 20/105 (19%), Positives = 33/105 (31%), Gaps = 11/105 (10%)
Query: 498 FITQISDVTQLKEGQSAHFEARLTP---VTDPDLVVEWFY-------NGKKLPHGHRYRT 547
FI + T +K G+ F A++ + P + GK L +
Sbjct: 3 FIEKPQGGT-VKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFER 61
Query: 548 FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKT 592
+ I+ + +G Y C T K D L+ T
Sbjct: 62 HSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 106
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (105), Expect = 2e-06
Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 11/100 (11%)
Query: 306 FTSHIKSLEGLKDGDSAHFECTLTP---VNDPELKVEWFH-------NGKPIFHKNRVKM 355
F + +K G+ F + + P +K GK + K +
Sbjct: 3 FIEKPQGGT-VKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFER 61
Query: 356 VSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
S M I + + +G Y C K D ++
Sbjct: 62 HSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE 101
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (98), Expect = 2e-05
Identities = 23/111 (20%), Positives = 34/111 (30%), Gaps = 12/111 (10%)
Query: 205 FTSEFQHLSNLSEGEIAHFEASL----------IPVGDQTMTVEFLYNGKPIEASHRIRT 254
F + Q + + GE F A + I GK ++
Sbjct: 3 FIEKPQGGT-VKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFER 61
Query: 255 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDKSKGQPPK 305
++I+ K G Y C T K S +LE V +S G P
Sbjct: 62 HSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE-VHESTGTTPN 111
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 1e-04
Identities = 21/110 (19%), Positives = 32/110 (29%), Gaps = 13/110 (11%)
Query: 694 FTSEFQHLSNLSEGEIAHFEASL----------IPVGDQTMTVEFLYNGKPIEASHRIRT 743
F + Q + + GE F A + I GK ++
Sbjct: 3 FIEKPQGGT-VKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFER 61
Query: 744 VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVVWSPSQTK 793
++I+ K G Y C T K S +LE V + T
Sbjct: 62 HSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE--VHESTGTT 109
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 7e-04
Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 14/101 (13%)
Query: 574 TNKYGSDVTKASLKCVSKTNLILESQLPEVEWFYNGKKLP---------HGHRYRTFHDF 624
T K G D+T K +L P ++WF +
Sbjct: 11 TVKVGEDIT---FIAKVKAEDLLRK--PTIKWFKGKWMDLASKAGKHLQLKETFERHSRV 65
Query: 625 GIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKT 665
+ I+ + +G Y C T K D L+ T
Sbjct: 66 YTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHEST 106
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.2 bits (82), Expect = 0.003
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 9/99 (9%)
Query: 67 VFIVPLKP-EFKLGEAQPLHLEAQVEPKND-PNLKIEWIF-------NGKPLELGSRFKT 117
+FI + K+GE + + E P +K GK L+L F+
Sbjct: 2 LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFER 61
Query: 118 TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTSTTI 156
+ + + + D G Y C S +
Sbjct: 62 HSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDL 100
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.9 bits (105), Expect = 2e-06
Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 12/104 (11%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPI----FHKNRVKMVS 357
PP+ S L++ + C V +P + W HNG+P+
Sbjct: 5 PPRVVS-------LEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG 57
Query: 358 DFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIKCFGKGG 401
+ + +++G Y A N G +
Sbjct: 58 EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKEPF 101
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.0 bits (100), Expect = 9e-06
Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 5/92 (5%)
Query: 505 VTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHG----HRYRTFHDFGIVILDIL 559
V L+E + V +P + W +NG+ L Y + L
Sbjct: 8 VVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFN 67
Query: 560 YCYEENSGVYECRATNKYGSDVTKASLKCVSK 591
N+G Y A N G+ + + +
Sbjct: 68 KPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 99
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.6 bits (99), Expect = 1e-05
Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 12/102 (11%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPV-GDQTMTVEFLYNGKPIEASHRIRTV----H 256
PP+ S L E E+ V G+ T+ +L+NG+P+ S I
Sbjct: 5 PPRVVS-------LEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG 57
Query: 257 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVDK 298
L + G YT A N G A ++N + +
Sbjct: 58 EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFLKE 99
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (93), Expect = 8e-05
Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 12/98 (12%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPV-GDQTMTVEFLYNGKPIEASHRIRTV----H 745
PP+ S L E E+ V G+ T+ +L+NG+P+ S I
Sbjct: 5 PPRVVS-------LEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG 57
Query: 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
L + G YT A N G A ++N
Sbjct: 58 EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH 95
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 2e-06
Identities = 10/92 (10%), Positives = 20/92 (21%), Gaps = 4/92 (4%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
P Q+ + + + G ++ W + +
Sbjct: 3 PTLKVQVPNAS-VDVGDDVLLRCQVEGRGLEQ--AGWILTELEQSATVMKSGGLPSLGLT 59
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTKASLK 587
L + N C A N G +
Sbjct: 60 L-ANVTSDLNRKNVTCWAENDVGRAEVSVQVN 90
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (90), Expect = 1e-04
Identities = 9/93 (9%), Positives = 17/93 (18%), Gaps = 4/93 (4%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P + + + GD C + W +
Sbjct: 2 VPTLKVQVPNAS-VDVGDDVLLRCQ--VEGRGLEQAGWILTELEQSATVMKSGGLPSLGL 58
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
+ + C A N G +
Sbjct: 59 TL-ANVTSDLNRKNVTCWAENDVGRAEVSVQVN 90
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.9 bits (81), Expect = 0.002
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 4/92 (4%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
P + + S + G+ G ++ A+ +
Sbjct: 2 VPTLKVQVPNAS-VDVGDDVLLRC--QVEGRGLEQAGWILTELEQSATVMKSGGLPSLGL 58
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
L T + TC A N G+AE+SV +
Sbjct: 59 TL-ANVTSDLNRKNVTCWAENDVGRAEVSVQV 89
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.9 bits (81), Expect = 0.002
Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 4/92 (4%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
P + + S + G+ G ++ A+ +
Sbjct: 2 VPTLKVQVPNAS-VDVGDDVLLRC--QVEGRGLEQAGWILTELEQSATVMKSGGLPSLGL 58
Query: 751 VLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
L T + TC A N G+AE+SV +
Sbjct: 59 TL-ANVTSDLNRKNVTCWAENDVGRAEVSVQV 89
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 44.5 bits (104), Expect = 2e-06
Identities = 13/90 (14%), Positives = 22/90 (24%), Gaps = 3/90 (3%)
Query: 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIV 554
P+++++ D+ K G R +
Sbjct: 5 VPQYVSK--DMM-AKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGK 61
Query: 555 ILDILYCYEENSGVYECRATNKYGSDVTKA 584
L E+ GVY C N G +
Sbjct: 62 RLLFKTTLPEDEGVYTCEVDNGVGKPQKHS 91
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 43.0 bits (100), Expect = 8e-06
Identities = 17/94 (18%), Positives = 28/94 (29%), Gaps = 4/94 (4%)
Query: 300 KGQP-PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSD 358
KG+P P++ S K + K GD C ++R+ +
Sbjct: 1 KGEPVPQYVS--KDMM-AKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNR 57
Query: 359 FGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRA 392
+ D G Y C N G+ +
Sbjct: 58 TSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHS 91
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.8 bits (102), Expect = 3e-06
Identities = 17/93 (18%), Positives = 25/93 (26%), Gaps = 12/93 (12%)
Query: 304 PKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVV 363
P FT K L + C + + W+ I V
Sbjct: 2 PFFTVEPKDLA-VPPNAPFQLSCEAVG-PPEPVTIVWWRGTTKIGGPAPSPSV------- 52
Query: 364 MDIAYVQSHDSGEYVCRAWNKYGEDFTR-ATIK 395
+ S + C A N G +R AT+
Sbjct: 53 --LNVTGVTQSTMFSCEAHNLKGLASSRTATVH 83
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (98), Expect = 1e-05
Identities = 10/88 (11%), Positives = 22/88 (25%), Gaps = 11/88 (12%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
P F + D+ + + + W+ K+ +
Sbjct: 2 PFFTVEPKDLA-VPPNAPFQLSCEAVG-PPEPVTIVWWRGTTKIGGPAPSPSVL------ 53
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTK 583
S ++ C A N G ++
Sbjct: 54 ---NVTGVTQSTMFSCEAHNLKGLASSR 78
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (93), Expect = 5e-05
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 11/85 (12%)
Query: 203 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV 262
P FT E + L+ + + +T+ + I +V
Sbjct: 2 PFFTVEPKDLA-VPPNAPFQLSCE-AVGPPEPVTIVWWRGTTKIGGPAPSPSVLNV---- 55
Query: 263 LEILGTKIEDTGVYTCRATNKWGQA 287
T + + +++C A N G A
Sbjct: 56 -----TGVTQSTMFSCEAHNLKGLA 75
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (93), Expect = 5e-05
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 11/85 (12%)
Query: 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVV 751
P FT E + L+ + + +T+ + I +V
Sbjct: 2 PFFTVEPKDLA-VPPNAPFQLSCE-AVGPPEPVTIVWWRGTTKIGGPAPSPSVLNV---- 55
Query: 752 LEILGTKIEDTGVYTCRATNKWGQA 776
T + + +++C A N G A
Sbjct: 56 -----TGVTQSTMFSCEAHNLKGLA 75
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.9 bits (84), Expect = 9e-04
Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 11/89 (12%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVT 125
P F V K + P L + + I W + + + +
Sbjct: 2 PFFTVEPKD-LAVPPNAPFQLSCEAVG-PPEPVTIVWWRGTTKIGGPAPSPSVLNV---- 55
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTST 154
+++C A NL G + T
Sbjct: 56 -----TGVTQSTMFSCEAHNLKGLASSRT 79
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.5 bits (101), Expect = 9e-06
Identities = 17/102 (16%), Positives = 28/102 (27%), Gaps = 11/102 (10%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWF-------YNGKKLPHGHRYR 546
P I+ G+ + + P + +G +
Sbjct: 5 NGPPIISSTQTQH-ALHGEKGQIKCF--IRSTPPPDRIAWSWKENVLESGTSGRYTVETI 61
Query: 547 TFHDFGIVILDILYCYEE-NSGVYECRATNKYGSDVTKASLK 587
+ + I L I +Y C A N +GSD LK
Sbjct: 62 STEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 103
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 7e-04
Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 12/101 (11%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWF-------HNGKPIFHKNRVKM 355
PP +S + G+ +C + P + +G +
Sbjct: 7 PPIISST--QTQHALHGEKGQIKCF--IRSTPPPDRIAWSWKENVLESGTSGRYTVETIS 62
Query: 356 VSDFGFVVMDIAYVQ-SHDSGEYVCRAWNKYGEDFTRATIK 395
+ + I+ + + Y C AWN +G D +K
Sbjct: 63 TEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 103
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (86), Expect = 8e-04
Identities = 16/109 (14%), Positives = 28/109 (25%), Gaps = 8/109 (7%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEF-----LYNGKPIEASHRIRTVH 256
PP +S + GE + + L +G + +
Sbjct: 7 PPIISSTQTQ--HALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 64
Query: 257 AFGMVVLEILGTKIE-DTGVYTCRATNKWGQAEISVNLECVDKSKGQPP 304
+ L I +Y C A N +G + L+ P
Sbjct: 65 EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMSGPS 113
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.2 bits (82), Expect = 0.003
Identities = 15/99 (15%), Positives = 27/99 (27%), Gaps = 8/99 (8%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEF-----LYNGKPIEASHRIRTVH 745
PP +S + GE + + L +G + +
Sbjct: 7 PPIISSTQTQ--HALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 64
Query: 746 AFGMVVLEILGTKIE-DTGVYTCRATNKWGQAEISVNLE 783
+ L I +Y C A N +G + L+
Sbjct: 65 EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLK 103
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.8 bits (99), Expect = 1e-05
Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 7/98 (7%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDP------DLVVEWFYNGKKLPHGHRYRTFH 549
T SDV + E +S + + P Y
Sbjct: 2 GSVYTAQSDVQ-VPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV 60
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
F + +++G Y C + + G + + S+
Sbjct: 61 TFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIH 98
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.6 bits (83), Expect = 0.001
Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 6/83 (7%)
Query: 319 GDSAHFECTLTPVNDPELKV------EWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSH 372
+S CT + + P ++ F + + V
Sbjct: 16 NESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRK 75
Query: 373 DSGEYVCRAWNKYGEDFTRATIK 395
D+GEY C + G+++ +I
Sbjct: 76 DNGEYTCMVSEEGGQNYGEVSIH 98
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 42.7 bits (99), Expect = 1e-05
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 1/88 (1%)
Query: 301 GQPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFG 360
G +F++ + + +G F C+ P + P L W N P F +
Sbjct: 1 GFLQEFSAEERDPVKITEGWGVMFTCS-PPPHYPALSYRWLLNEFPNFIPADGRRFVSQT 59
Query: 361 FVVMDIAYVQSHDSGEYVCRAWNKYGED 388
+ IA ++ D G Y C A +
Sbjct: 60 TGNLYIAKTEASDLGNYSCFATSHIDFI 87
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 41.2 bits (95), Expect = 4e-05
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Query: 200 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 259
G +F++E + ++EG F S P ++ +L N P R +
Sbjct: 1 GFLQEFSAEERDPVKITEGWGVMFTCS-PPPHYPALSYRWLLNEFPNFIPADGRRFVSQT 59
Query: 260 MVVLEILGTKIEDTGVYTCRATNKWGQAEISV 291
L I T+ D G Y+C AT+ SV
Sbjct: 60 TGNLYIAKTEASDLGNYSCFATSHIDFITKSV 91
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 41.2 bits (95), Expect = 4e-05
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 1/92 (1%)
Query: 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG 748
G +F++E + ++EG F S P ++ +L N P R +
Sbjct: 1 GFLQEFSAEERDPVKITEGWGVMFTCS-PPPHYPALSYRWLLNEFPNFIPADGRRFVSQT 59
Query: 749 MVVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
L I T+ D G Y+C AT+ SV
Sbjct: 60 TGNLYIAKTEASDLGNYSCFATSHIDFITKSV 91
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 41.2 bits (95), Expect = 4e-05
Identities = 24/102 (23%), Positives = 34/102 (33%), Gaps = 2/102 (1%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
+F + D ++ EG F P P L W N R F
Sbjct: 4 QEFSAEERDPVKITEGWGVMFTCS-PPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN 62
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTKASLKCVSKTNLILE 597
L I + G Y C AT+ +TK+ S+ +L E
Sbjct: 63 LYIAKTEASDLGNYSCFATSHIDF-ITKSVFSKFSQLSLAAE 103
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 36.6 bits (83), Expect = 0.002
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 1/89 (1%)
Query: 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVT 125
F + K+ E + P + P L W+ N P + + +
Sbjct: 4 QEFSAEERDPVKITEGWGVMFTCSP-PPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGN 62
Query: 126 LDLTEVYDRDQGIYTCRAWNLAGETFTST 154
L + + D G Y+C A + S
Sbjct: 63 LYIAKTEASDLGNYSCFATSHIDFITKSV 91
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.4 bits (99), Expect = 1e-05
Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 11/86 (12%)
Query: 319 GDSAHFECTLTPVNDPELKVEW---------FHNGKPIFHKNRVKMVSDFGFVVMDIAYV 369
G + + D +V W F F K+ + G + I +
Sbjct: 10 GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLK--IKNL 67
Query: 370 QSHDSGEYVCRAWNKYGEDFTRATIK 395
DSG Y ++ G +
Sbjct: 68 TRDDSGTYNVTVYSTNGTRILNKALD 93
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.1 bits (97), Expect = 2e-05
Identities = 8/95 (8%), Positives = 28/95 (29%), Gaps = 6/95 (6%)
Query: 499 ITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI--- 555
+ ++ E + + P + ++ + + + +
Sbjct: 7 VHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL 66
Query: 556 ---LDILYCYEENSGVYECRATNKYGSDVTKASLK 587
+ E++G Y C + + G+ + +K
Sbjct: 67 PTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVK 101
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (87), Expect = 5e-04
Identities = 11/85 (12%), Positives = 26/85 (30%), Gaps = 6/85 (7%)
Query: 317 KDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMD------IAYVQ 370
+ + C + + P ++ ++ K+ + + V V
Sbjct: 17 PENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVT 76
Query: 371 SHDSGEYVCRAWNKYGEDFTRATIK 395
D+G Y C + G + +K
Sbjct: 77 REDTGTYTCMVSEEGGNSYGEVKVK 101
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.8 bits (97), Expect = 3e-05
Identities = 9/85 (10%), Positives = 21/85 (24%), Gaps = 4/85 (4%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVT-DPDLVVEWFYNGKKLPHGHRYRTFHDFGIV 554
P+ + + G+ ++ L V + R + V
Sbjct: 4 PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLL---RGEKELKREPAVGEPAEV 60
Query: 555 ILDILYCYEENSGVYECRATNKYGS 579
+L + + + CR
Sbjct: 61 TTTVLVRRDHHGAQFSCRTELDLRP 85
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (96), Expect = 3e-05
Identities = 11/86 (12%), Positives = 22/86 (25%), Gaps = 5/86 (5%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVN-DPELKVEWFHNGKPIFHKNRVKMVSDFGF 361
P + G C + +L V K + + V ++
Sbjct: 4 PERVELAPLPSW-QPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAE--- 59
Query: 362 VVMDIAYVQSHDSGEYVCRAWNKYGE 387
V + + H ++ CR
Sbjct: 60 VTTTVLVRRDHHGAQFSCRTELDLRP 85
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.6 bits (81), Expect = 0.003
Identities = 9/92 (9%), Positives = 21/92 (22%), Gaps = 3/92 (3%)
Query: 202 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 261
P + G+ + + L + + R V V
Sbjct: 4 PERVELAPLPS-WQPVGKQLTLRCQVEGGAPRAQLTVVLL--RGEKELKREPAVGEPAEV 60
Query: 262 VLEILGTKIEDTGVYTCRATNKWGQAEISVNL 293
+L + ++CR + +
Sbjct: 61 TTTVLVRRDHHGAQFSCRTELDLRPQGLELFE 92
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.6 bits (81), Expect = 0.003
Identities = 9/92 (9%), Positives = 21/92 (22%), Gaps = 3/92 (3%)
Query: 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMV 750
P + G+ + + L + + R V V
Sbjct: 4 PERVELAPLPS-WQPVGKQLTLRCQVEGGAPRAQLTVVLL--RGEKELKREPAVGEPAEV 60
Query: 751 VLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782
+L + ++CR + +
Sbjct: 61 TTTVLVRRDHHGAQFSCRTELDLRPQGLELFE 92
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.9 bits (97), Expect = 3e-05
Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 21/98 (21%)
Query: 319 GDSAHFECTLTPVNDPE-LKVEWFHNGKPIF-----------------HKNRVKMVS--- 357
GD A C ++P + ++V W+ + ++ R +++
Sbjct: 17 GDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESI 76
Query: 358 DFGFVVMDIAYVQSHDSGEYVCRAWNKYGEDFTRATIK 395
G V + I V+ D G Y C + ++ +K
Sbjct: 77 GEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELK 114
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.0 bits (92), Expect = 1e-04
Identities = 18/110 (16%), Positives = 28/110 (25%), Gaps = 21/110 (19%)
Query: 499 ITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD-------- 550
+ + G A R++P + + +Y H YR D
Sbjct: 5 VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPE 64
Query: 551 -------------FGIVILDILYCYEENSGVYECRATNKYGSDVTKASLK 587
G V L I + G Y C + + LK
Sbjct: 65 YRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELK 114
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.9 bits (89), Expect = 4e-04
Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 3/98 (3%)
Query: 200 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH--- 256
G + N + E+ + + V + + E R +
Sbjct: 17 GDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESI 76
Query: 257 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 294
G V L I + D G YTC + Q E +V L+
Sbjct: 77 GEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELK 114
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.9 bits (89), Expect = 4e-04
Identities = 19/98 (19%), Positives = 31/98 (31%), Gaps = 3/98 (3%)
Query: 689 GRPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH--- 745
G + N + E+ + + V + + E R +
Sbjct: 17 GDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESI 76
Query: 746 AFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLE 783
G V L I + D G YTC + Q E +V L+
Sbjct: 77 GEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELK 114
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (92), Expect = 1e-04
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 582 TKASLKCVSKTNLILES-QLPEVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSG 640
L C E+ +LP+++W+ + K L + + + L ++ E++ G
Sbjct: 15 GDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD---RLIVMNVAEKHRG 71
Query: 641 VYECRATNKYGSDVTKASL 659
Y C A+ Y +
Sbjct: 72 NYTCHASYTYLGKQYPITR 90
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (86), Expect = 7e-04
Identities = 14/79 (17%), Positives = 22/79 (27%), Gaps = 7/79 (8%)
Query: 319 GDSAHFECTLTPV----NDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDS 374
C N+ K++W+ + KP+ N + + V
Sbjct: 14 AGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLI---VMNVAEKHR 70
Query: 375 GEYVCRAWNKYGEDFTRAT 393
G Y C A Y T
Sbjct: 71 GNYTCHASYTYLGKQYPIT 89
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.002
Identities = 9/74 (12%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 231 GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 290
++ +++ + KP+ + + L ++ + G YTC A+ + +
Sbjct: 31 NNELPKLQWYKDCKPLLLDNIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYLGKQYP 87
Query: 291 ----VNLECVDKSK 300
+ ++++K
Sbjct: 88 ITRVIEFITLEENK 101
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.2 bits (80), Expect = 0.004
Identities = 8/64 (12%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
Query: 720 GDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEIS 779
++ +++ + KP+ + + L ++ + G YTC A+ + +
Sbjct: 31 NNELPKLQWYKDCKPLLLDNIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYLGKQYP 87
Query: 780 VNLE 783
+
Sbjct: 88 ITRV 91
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 39.7 bits (91), Expect = 2e-04
Identities = 10/77 (12%), Positives = 18/77 (23%), Gaps = 6/77 (7%)
Query: 510 EGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR------YRTFHDFGIVILDILYCYE 563
EG+ + L L+ P+ D + +
Sbjct: 16 EGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDV 75
Query: 564 ENSGVYECRATNKYGSD 580
+ Y C A N +
Sbjct: 76 SDIYKYVCTAKNAAVDE 92
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 37.7 bits (86), Expect = 8e-04
Identities = 16/94 (17%), Positives = 24/94 (25%), Gaps = 12/94 (12%)
Query: 302 QPPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRV-------K 354
P T +EG +C P P+ + W V
Sbjct: 4 ASPAKTHEKTPIEG----RPFQLDCV-LPNAYPKPLITWKKRLSGADPNADVTDFDRRIT 58
Query: 355 MVSDFGFVVMDIAYVQSHDSGEYVCRAWNKYGED 388
D + D +YVC A N ++
Sbjct: 59 AGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDE 92
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 36.6 bits (83), Expect = 0.002
Identities = 12/98 (12%), Positives = 24/98 (24%), Gaps = 12/98 (12%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI-------R 253
P T E EG + +P + + + + +
Sbjct: 4 ASPAKTHE----KTPIEGRPFQLDCV-LPNAYPKPLITWKKRLSGADPNADVTDFDRRIT 58
Query: 254 TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 291
+ + + D Y C A N E+ +
Sbjct: 59 AGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVL 96
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Score = 36.6 bits (83), Expect = 0.002
Identities = 12/98 (12%), Positives = 24/98 (24%), Gaps = 12/98 (12%)
Query: 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI-------R 742
P T E EG + +P + + + + +
Sbjct: 4 ASPAKTHE----KTPIEGRPFQLDCV-LPNAYPKPLITWKKRLSGADPNADVTDFDRRIT 58
Query: 743 TVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 780
+ + + D Y C A N E+ +
Sbjct: 59 AGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVL 96
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.5 bits (88), Expect = 3e-04
Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 3/79 (3%)
Query: 319 GDSAHFECTLTP-VNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV-VMDIAYVQSHDSGE 376
G+S F C + D ++ + K ++ R+ +V + + I D+G
Sbjct: 15 GESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGI 74
Query: 377 YVCRAWNKYGEDFTRATIK 395
Y C + G + AT+
Sbjct: 75 YKCVVTAEDGTQ-SEATVN 92
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (88), Expect = 3e-04
Identities = 17/84 (20%), Positives = 21/84 (25%), Gaps = 5/84 (5%)
Query: 303 PPKFTSHIKSLEGLKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFV 362
P L L GDS C + V W +
Sbjct: 6 CPAQEVARGVLTSLP-GDSVTLTCP-GVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLL 63
Query: 363 VMDIAYVQSHDSGEYVCRAWNKYG 386
+ VQ HDSG Y C +
Sbjct: 64 ---LRSVQLHDSGNYSCYRAGRPA 84
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (85), Expect = 0.001
Identities = 14/93 (15%), Positives = 23/93 (24%), Gaps = 6/93 (6%)
Query: 490 APVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFH 549
AP P +T L G S + + V W
Sbjct: 2 APR-RCPAQEVARGVLTSL-PGDSVTLTC-PGVEPEDNATVHWVLRKPAAGSHPSRWAGM 58
Query: 550 DFGIVILDILYCYEENSGVYECRATNKYGSDVT 582
+++ + +SG Y C + V
Sbjct: 59 GRRLLLRSV---QLHDSGNYSCYRAGRPAGTVH 88
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.001
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 6/93 (6%)
Query: 201 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGM 260
R P L++L G+ + TV ++ +
Sbjct: 5 RCPAQEVARGVLTSL-PGDSVTLT-CPGVEPEDNATVHWVLRKPAAGSHPSRWA---GMG 59
Query: 261 VVLEILGTKIEDTGVYTCRATNK-WGQAEISVN 292
L + ++ D+G Y+C + G + V+
Sbjct: 60 RRLLLRSVQLHDSGNYSCYRAGRPAGTVHLLVD 92
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.001
Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 6/93 (6%)
Query: 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGM 749
R P L++L G+ + TV ++ +
Sbjct: 5 RCPAQEVARGVLTSL-PGDSVTLT-CPGVEPEDNATVHWVLRKPAAGSHPSRWA---GMG 59
Query: 750 VVLEILGTKIEDTGVYTCRATNK-WGQAEISVN 781
L + ++ D+G Y+C + G + V+
Sbjct: 60 RRLLLRSVQLHDSGNYSCYRAGRPAGTVHLLVD 92
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (88), Expect = 4e-04
Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 6/80 (7%)
Query: 319 GDSAHFECTLTPVNDPELKVEWFHNGKPI-----FHKNRVKMVSDFGFVVMDIAYVQSHD 373
GD EC + + V W + K + F ++ V +D
Sbjct: 18 GDPFELECPVKYCANRP-HVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPND 76
Query: 374 SGEYVCRAWNKYGEDFTRAT 393
+G Y C A + + +T
Sbjct: 77 NGSYRCSANFQSNLIESHST 96
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.8 bits (81), Expect = 0.004
Identities = 12/96 (12%), Positives = 28/96 (29%), Gaps = 7/96 (7%)
Query: 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG-----HRYRTF 548
+ +I + S+ + + G E + + V W ++
Sbjct: 2 DVQLYIKRQSEHS-ILAGDPFELECPVKYCANRP-HVTWCKLNGTTCVKLEDRQTSWKEE 59
Query: 549 HDFGIVILDILYCYEENSGVYECRATNKYGSDVTKA 584
+ IL ++G Y C A + + +
Sbjct: 60 KNISFFILHFEPVLPNDNGSYRCSANFQSNLIESHS 95
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.1 bits (82), Expect = 0.002
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 9/72 (12%)
Query: 316 LKDGDSAHFECTLTPVNDPELKVEWFHNGKPIFHKNRVKMVSDFGFVVMDIAYVQSHDSG 375
+ +G C N KV ++ +G+ + + +S I DSG
Sbjct: 12 VMEGQPLFLRCH-GWRNWDVYKVIYYKDGEALKYWYENHNIS--------ITNATVEDSG 62
Query: 376 EYVCRAWNKYGE 387
Y C +
Sbjct: 63 TYYCTGKVWQLD 74
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.1 bits (82), Expect = 0.002
Identities = 12/79 (15%), Positives = 22/79 (27%), Gaps = 9/79 (11%)
Query: 506 TQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEEN 565
+ EGQ V ++ +G+ L + + I E+
Sbjct: 10 EVVMEGQPLFLRCH-GWRNWDVYKVIYYKDGEALKYWYENHNIS--------ITNATVED 60
Query: 566 SGVYECRATNKYGSDVTKA 584
SG Y C ++
Sbjct: 61 SGTYYCTGKVWQLDYESEP 79
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.1 bits (82), Expect = 0.003
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 748 GMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786
G + + ++ D G Y C+ G A ++L +V
Sbjct: 86 GDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 124
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.1 bits (79), Expect = 0.004
Identities = 14/91 (15%), Positives = 22/91 (24%), Gaps = 6/91 (6%)
Query: 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVI 555
P + V + G S R D V+W D G +
Sbjct: 3 PLQVEPPEPVVAVALGASRQLTCR-LACADRGASVQWRGL-----DTSLGAVQSDTGRSV 56
Query: 556 LDILYCYEENSGVYECRATNKYGSDVTKASL 586
L + +G C + + L
Sbjct: 57 LTVRNASLSAAGTRVCVGSCGGRTFQHTVQL 87
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 805 | |||
| d1koaa1 | 97 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.78 | |
| d2cqva1 | 101 | Telokin {Human (Homo sapiens) [TaxId: 9606]} | 99.76 | |
| d1g1ca_ | 98 | Titin {Human (Homo sapiens), different modules [Ta | 99.75 | |
| d1wiua_ | 93 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.75 | |
| d1cs6a4 | 89 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.73 | |
| d1fhga_ | 102 | Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103 | 99.73 | |
| d1tnna_ | 91 | Titin {Human (Homo sapiens), different modules [Ta | 99.69 | |
| d1biha4 | 89 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.68 | |
| d1koaa1 | 97 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.66 | |
| d1g1ca_ | 98 | Titin {Human (Homo sapiens), different modules [Ta | 99.66 | |
| d2cqva1 | 101 | Telokin {Human (Homo sapiens) [TaxId: 9606]} | 99.64 | |
| d1wiua_ | 93 | Twitchin {Nematode (Caenorhabditis elegans) [TaxId | 99.64 | |
| d1cs6a4 | 89 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.63 | |
| d1qz1a3 | 100 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.63 | |
| d1fhga_ | 102 | Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103 | 99.63 | |
| d1epfa2 | 92 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.62 | |
| d3dara1 | 97 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.61 | |
| d1cs6a3 | 91 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.61 | |
| d3b5ha1 | 101 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 99.61 | |
| d1biha4 | 89 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.61 | |
| d1gxea_ | 130 | Cardiac myosin binding protein C, different domain | 99.58 | |
| d1gsma1 | 90 | Mucosal addressin cell adhesion molecule-1 (MADCAM | 99.58 | |
| d1rhfa2 | 85 | Tyrosine-protein kinase receptor tyro3, second dom | 99.57 | |
| d1gl4b_ | 89 | Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: | 99.57 | |
| d2fdbp2 | 109 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.57 | |
| d1vcaa2 | 90 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 99.57 | |
| d1rhfa1 | 91 | Tyrosine-protein kinase receptor tyro3, N-terminal | 99.57 | |
| d1biha3 | 97 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.57 | |
| d1wwbx_ | 103 | Ligand binding domain of trkB receptor {Human (Hom | 99.56 | |
| d1tnna_ | 91 | Titin {Human (Homo sapiens), different modules [Ta | 99.56 | |
| d2ifga1 | 92 | High affinity nerve growth factor receptor TrkA, d | 99.56 | |
| d2nxyb2 | 84 | CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9 | 99.55 | |
| d1pd6a_ | 94 | Cardiac myosin binding protein C, different domain | 99.55 | |
| d2oz4a3 | 84 | Intercellular adhesion molecule-1, ICAM-1 {Human ( | 99.54 | |
| d1wwca_ | 105 | NT3 binding domain of trkC receptor {Human (Homo s | 99.54 | |
| d2avga1 | 110 | Cardiac myosin binding protein C, different domain | 99.54 | |
| d1cs6a1 | 97 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.53 | |
| d1l6za2 | 96 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t | 99.53 | |
| d1biha1 | 94 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.53 | |
| d2dava1 | 113 | Myosin-binding protein C, slow-type {Human (Homo s | 99.52 | |
| d1x44a1 | 90 | Myosin-binding protein C, slow-type {Human (Homo s | 99.52 | |
| d2c9aa1 | 96 | Receptor-type tyrosine-protein phosphatase mu {Hum | 99.52 | |
| d1cs6a3 | 91 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.52 | |
| d1he7a_ | 107 | High affinity nerve growth factor receptor TrkA, d | 99.51 | |
| d1qz1a3 | 100 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.5 | |
| d1epfa1 | 97 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.5 | |
| d2nxyb2 | 84 | CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9 | 99.5 | |
| d1gsma1 | 90 | Mucosal addressin cell adhesion molecule-1 (MADCAM | 99.49 | |
| d1gl4b_ | 89 | Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: | 99.49 | |
| d3dara1 | 97 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.49 | |
| d1pd6a_ | 94 | Cardiac myosin binding protein C, different domain | 99.49 | |
| d1tiua_ | 89 | Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI | 99.47 | |
| d1vcaa2 | 90 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 99.47 | |
| d1iray3 | 107 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.47 | |
| d1f97a2 | 110 | Junction adhesion molecule, JAM, C-terminal domain | 99.46 | |
| d1epfa2 | 92 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.45 | |
| d2aw2a1 | 104 | B- and T-lymphocyte attenuator CD272 {Human (Homo | 99.45 | |
| d3b5ha1 | 101 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 99.45 | |
| d1nbqa2 | 104 | Junction adhesion molecule, JAM, C-terminal domain | 99.45 | |
| d1gxea_ | 130 | Cardiac myosin binding protein C, different domain | 99.45 | |
| d1wwbx_ | 103 | Ligand binding domain of trkB receptor {Human (Hom | 99.45 | |
| d2fcba2 | 88 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.44 | |
| d1x44a1 | 90 | Myosin-binding protein C, slow-type {Human (Homo s | 99.44 | |
| d1rhfa2 | 85 | Tyrosine-protein kinase receptor tyro3, second dom | 99.43 | |
| d1n26a1 | 93 | Interleukin-6 receptor alpha chain, N-terminal dom | 99.43 | |
| d2fdbp2 | 109 | Fibroblast growth factor receptor, FGFR {Human (Ho | 99.43 | |
| d2avga1 | 110 | Cardiac myosin binding protein C, different domain | 99.42 | |
| d2oz4a3 | 84 | Intercellular adhesion molecule-1, ICAM-1 {Human ( | 99.42 | |
| d1rhfa1 | 91 | Tyrosine-protein kinase receptor tyro3, N-terminal | 99.41 | |
| d1wwca_ | 105 | NT3 binding domain of trkC receptor {Human (Homo s | 99.41 | |
| d1fnla2 | 89 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.41 | |
| d1cs6a2 | 105 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.41 | |
| d1biha3 | 97 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.39 | |
| d1l6za2 | 96 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t | 99.39 | |
| d2ifga1 | 92 | High affinity nerve growth factor receptor TrkA, d | 99.39 | |
| d2fcba2 | 88 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.38 | |
| d1tiua_ | 89 | Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI | 99.38 | |
| d1f2qa2 | 89 | IgE high affinity receptor alpha subunit {Human (H | 99.38 | |
| d1f97a1 | 102 | Junction adhesion molecule, JAM, N-terminal domain | 99.38 | |
| d2crya1 | 115 | Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s | 99.37 | |
| d1iray1 | 101 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.37 | |
| d1nbqa1 | 105 | Junction adhesion molecule, JAM, N-terminal domain | 99.36 | |
| d1olza1 | 92 | Semaphorin 4d Ig-like domain {Human (Homo sapiens) | 99.36 | |
| d1cs6a1 | 97 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.36 | |
| d2c9aa1 | 96 | Receptor-type tyrosine-protein phosphatase mu {Hum | 99.35 | |
| d1iama1 | 103 | Intercellular cell adhesion molecule-1 (ICAM-1) {H | 99.35 | |
| d1biha1 | 94 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.34 | |
| d1iray2 | 103 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.34 | |
| d1epfa1 | 97 | Neural cell adhesion molecule (NCAM) {Rat (Rattus | 99.33 | |
| d1n26a1 | 93 | Interleukin-6 receptor alpha chain, N-terminal dom | 99.33 | |
| d1iray3 | 107 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.33 | |
| d2dava1 | 113 | Myosin-binding protein C, slow-type {Human (Homo s | 99.33 | |
| d1he7a_ | 107 | High affinity nerve growth factor receptor TrkA, d | 99.33 | |
| d1fnla2 | 89 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.33 | |
| d1f2qa2 | 89 | IgE high affinity receptor alpha subunit {Human (H | 99.31 | |
| d2aw2a1 | 104 | B- and T-lymphocyte attenuator CD272 {Human (Homo | 99.31 | |
| d1f97a2 | 110 | Junction adhesion molecule, JAM, C-terminal domain | 99.3 | |
| d1fnla1 | 84 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.3 | |
| d1nbqa2 | 104 | Junction adhesion molecule, JAM, C-terminal domain | 99.28 | |
| d2fcba1 | 85 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.28 | |
| d1cs6a2 | 105 | Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | 99.28 | |
| d1f2qa1 | 82 | IgE high affinity receptor alpha subunit {Human (H | 99.27 | |
| d1iama1 | 103 | Intercellular cell adhesion molecule-1 (ICAM-1) {H | 99.26 | |
| d2crya1 | 115 | Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s | 99.22 | |
| d1nbqa1 | 105 | Junction adhesion molecule, JAM, N-terminal domain | 99.19 | |
| d1iray1 | 101 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.19 | |
| d1zxqa1 | 106 | Intercellular cell adhesion molecule-2 (ICAM-2) {H | 99.19 | |
| d1f97a1 | 102 | Junction adhesion molecule, JAM, N-terminal domain | 99.18 | |
| d1olza1 | 92 | Semaphorin 4d Ig-like domain {Human (Homo sapiens) | 99.18 | |
| d1iray2 | 103 | Type-1 interleukin-1 receptor {Human (Homo sapiens | 99.16 | |
| d1fnla1 | 84 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.15 | |
| d2fcba1 | 85 | Fc gamma receptor ectodomain (CD32) {Human (Homo s | 99.14 | |
| d1biha2 | 111 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 99.13 | |
| d1f2qa1 | 82 | IgE high affinity receptor alpha subunit {Human (H | 99.11 | |
| d1zxqa1 | 106 | Intercellular cell adhesion molecule-2 (ICAM-2) {H | 99.1 | |
| d1ccza1 | 93 | CD2-binding domain of CD58, N-terminal domain {Hum | 98.94 | |
| d1biha2 | 111 | Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | 98.93 | |
| d1pkoa_ | 126 | Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra | 98.89 | |
| d1ccza1 | 93 | CD2-binding domain of CD58, N-terminal domain {Hum | 98.85 | |
| d1pkoa_ | 126 | Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra | 98.84 | |
| d1hnga1 | 98 | CD2, first domain {Rat (Rattus norvegicus) [TaxId: | 98.76 | |
| d1hnga1 | 98 | CD2, first domain {Rat (Rattus norvegicus) [TaxId: | 98.74 | |
| d1eaja_ | 124 | Coxsackie virus and adenovirus receptor (Car), dom | 98.58 | |
| d1a0ql1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.58 | |
| d1eaja_ | 124 | Coxsackie virus and adenovirus receptor (Car), dom | 98.57 | |
| d1vcaa1 | 109 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 98.57 | |
| d1l6za1 | 107 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t | 98.54 | |
| d1olla1 | 95 | Ligand binding domain of NK receptor NKp46 {Human | 98.51 | |
| d1l6za1 | 107 | Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t | 98.51 | |
| d2rhea_ | 114 | Immunoglobulin light chain lambda variable domain, | 98.51 | |
| d1olla1 | 95 | Ligand binding domain of NK receptor NKp46 {Human | 98.51 | |
| d3bp5a1 | 114 | Programmed cell death protein 1, PD1, extracellula | 98.51 | |
| d1ucta1 | 99 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 98.49 | |
| d1i8ka_ | 106 | Immunoglobulin light chain kappa variable domain, | 98.49 | |
| d1ospl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.49 | |
| d1j1pl_ | 107 | Immunoglobulin light chain kappa variable domain, | 98.49 | |
| d1c5cl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.48 | |
| d2esvd1 | 110 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.47 | |
| d1kcvl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.47 | |
| d1mexl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.46 | |
| d1op3k1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.46 | |
| d1ucta1 | 99 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 98.46 | |
| d8faba1 | 103 | Immunoglobulin light chain lambda variable domain, | 98.45 | |
| d1tjgl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.45 | |
| d1yqvl1 | 104 | Immunoglobulin light chain kappa variable domain, | 98.43 | |
| d1lk3l1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.43 | |
| d1sq2n_ | 112 | Novel antigen receptor (against lysozyme) {Nurse s | 98.43 | |
| d1nezg_ | 122 | CD8 {Mouse (Mus musculus) [TaxId: 10090]} | 98.43 | |
| d1a0ql1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.41 | |
| d1i8ka_ | 106 | Immunoglobulin light chain kappa variable domain, | 98.41 | |
| d1rzfl1 | 111 | Immunoglobulin light chain lambda variable domain, | 98.4 | |
| d1jhll_ | 108 | Immunoglobulin light chain kappa variable domain, | 98.4 | |
| d1vesa_ | 113 | Novel antigen receptor 12Y-2 {Spotted wobbegong (O | 98.4 | |
| d1xeda_ | 116 | Polymeric-immunoglobulin receptor, PIGR {Human (Ho | 98.39 | |
| d3bp5a1 | 114 | Programmed cell death protein 1, PD1, extracellula | 98.39 | |
| d2bnqd1 | 113 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.38 | |
| d2ak4d1 | 114 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.36 | |
| d1tvda_ | 116 | T-cell antigen receptor {Human (Homo sapiens), del | 98.36 | |
| d1akjd_ | 114 | CD8 {Human (Homo sapiens) [TaxId: 9606]} | 98.35 | |
| d1vcaa1 | 109 | Vascular cell adhesion molecule-1 (VCAM-1) {Human | 98.34 | |
| d2fx7l1 | 108 | Immunoglobulin light chain kappa variable domain, | 98.34 | |
| d1akjd_ | 114 | CD8 {Human (Homo sapiens) [TaxId: 9606]} | 98.34 | |
| d2nxyb1 | 97 | CD4 V-set domains {Human (Homo sapiens) [TaxId: 96 | 98.34 | |
| d1kcvl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.33 | |
| d1neua_ | 119 | Myelin membrane adhesion molecule P0 {Rat (Rattus | 98.33 | |
| d2ak4d1 | 114 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.33 | |
| d1w72l1 | 109 | Immunoglobulin light chain lambda variable domain, | 98.33 | |
| d1hkfa_ | 108 | NK cell activating receptor NKP44 {Human (Homo sap | 98.33 | |
| d1q9ra1 | 113 | Immunoglobulin light chain kappa variable domain, | 98.32 | |
| d2nxyb1 | 97 | CD4 V-set domains {Human (Homo sapiens) [TaxId: 96 | 98.32 | |
| d1c5cl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.32 | |
| d2bnqd1 | 113 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.32 | |
| d1d5il1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.31 | |
| d1xeda_ | 116 | Polymeric-immunoglobulin receptor, PIGR {Human (Ho | 98.31 | |
| d1neua_ | 119 | Myelin membrane adhesion molecule P0 {Rat (Rattus | 98.31 | |
| d1mexl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.3 | |
| d1i9ea_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.3 | |
| d1oaql_ | 110 | Immunoglobulin light chain lambda variable domain, | 98.3 | |
| d1muja1 | 100 | Class II MHC alpha chain, C-terminal domain {Mouse | 98.3 | |
| d1bwwa_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.3 | |
| d3cx5k1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.3 | |
| d1hkfa_ | 108 | NK cell activating receptor NKP44 {Human (Homo sap | 98.3 | |
| d2rhea_ | 114 | Immunoglobulin light chain lambda variable domain, | 98.29 | |
| d2cdea1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.29 | |
| d1j1pl_ | 107 | Immunoglobulin light chain kappa variable domain, | 98.29 | |
| d1mqkl_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.29 | |
| d1lp9e1 | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.29 | |
| d1k5nb_ | 100 | beta2-microglobulin {Human (Homo sapiens) [TaxId: | 98.28 | |
| d1f3rb2 | 119 | Immunoglobulin light chain kappa variable domain, | 98.27 | |
| d1nezg_ | 122 | CD8 {Mouse (Mus musculus) [TaxId: 10090]} | 98.27 | |
| d2cdea1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.27 | |
| d2gsia1 | 111 | Immunoglobulin light chain kappa variable domain, | 98.26 | |
| d1lk2b_ | 99 | beta2-microglobulin {Mouse (Mus musculus) [TaxId: | 98.26 | |
| d3cx5k1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.25 | |
| d2esvd1 | 110 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.25 | |
| d1jhll_ | 108 | Immunoglobulin light chain kappa variable domain, | 98.25 | |
| d1ospl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.25 | |
| d1nfde1 | 108 | Immunoglobulin light chain lambda variable domain, | 98.24 | |
| d1tjgl1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.24 | |
| d1lk3l1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.23 | |
| d1lp9e1 | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.23 | |
| d2g5ra1 | 121 | N-terminal domain of sialic acid binding Ig-like l | 98.23 | |
| d1bd2d1 | 111 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.21 | |
| d1u3ha1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.21 | |
| d1op3k1 | 106 | Immunoglobulin light chain kappa variable domain, | 98.2 | |
| d1sq2n_ | 112 | Novel antigen receptor (against lysozyme) {Nurse s | 98.2 | |
| d1mqkl_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.2 | |
| d1cd0a_ | 111 | Immunoglobulin light chain lambda variable domain, | 98.2 | |
| d1n4xl_ | 113 | Immunoglobulin light chain kappa variable domain, | 98.2 | |
| d1vesa_ | 113 | Novel antigen receptor 12Y-2 {Spotted wobbegong (O | 98.19 | |
| d2aq2a1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.19 | |
| d1i9ea_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.19 | |
| d1mjul1 | 112 | Immunoglobulin light chain kappa variable domain, | 98.18 | |
| d1muja1 | 100 | Class II MHC alpha chain, C-terminal domain {Mouse | 98.18 | |
| d1d5il1 | 107 | Immunoglobulin light chain kappa variable domain, | 98.18 | |
| d1lgva1 | 112 | Immunoglobulin light chain lambda variable domain, | 98.18 | |
| d1yqvl1 | 104 | Immunoglobulin light chain kappa variable domain, | 98.18 | |
| d1q9ra1 | 113 | Immunoglobulin light chain kappa variable domain, | 98.17 | |
| d1smoa_ | 113 | TREM-1 (triggering receptor expressed on myeloid c | 98.17 | |
| d1olla2 | 93 | Ligand binding domain of NK receptor NKp46 {Human | 98.17 | |
| d8faba1 | 103 | Immunoglobulin light chain lambda variable domain, | 98.17 | |
| d1ogad1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.16 | |
| d1bwwa_ | 109 | Immunoglobulin light chain kappa variable domain, | 98.16 | |
| d1tvda_ | 116 | T-cell antigen receptor {Human (Homo sapiens), del | 98.16 | |
| d1fo0a_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.15 | |
| d1dr9a1 | 105 | CD80, N-terminal domain {Human (Homo sapiens) [Tax | 98.15 | |
| d1ncwl1 | 112 | Immunoglobulin light chain kappa variable domain, | 98.15 | |
| d2fx7l1 | 108 | Immunoglobulin light chain kappa variable domain, | 98.15 | |
| d1k5nb_ | 100 | beta2-microglobulin {Human (Homo sapiens) [TaxId: | 98.14 | |
| d2ij0c1 | 118 | T-cell antigen receptor {Human (Homo sapiens), bet | 98.14 | |
| d1j05a_ | 111 | Immunoglobulin light chain kappa variable domain, | 98.14 | |
| d1hxma1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 98.13 | |
| d1fnga1 | 101 | Class II MHC alpha chain, C-terminal domain {Mouse | 98.12 | |
| d1nkra2 | 99 | Killer cell inhibitory receptor {Human (Homo sapie | 98.12 | |
| d1fo0a_ | 115 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.12 | |
| d1d5mb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 98.12 | |
| d2gj6d1 | 94 | T-cell antigen receptor {Mouse (Mus musculus), bet | 98.11 | |
| d1ncwl1 | 112 | Immunoglobulin light chain kappa variable domain, | 98.11 | |
| d1hdmb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 98.1 | |
| d2gsia1 | 111 | Immunoglobulin light chain kappa variable domain, | 98.1 | |
| d1j8hd1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.09 | |
| d1w72l1 | 109 | Immunoglobulin light chain lambda variable domain, | 98.09 | |
| d1j8hd1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.09 | |
| d1kgcd1 | 112 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.08 | |
| d1uvqa1 | 99 | Class II MHC alpha chain, C-terminal domain {Human | 98.08 | |
| d1lgva1 | 112 | Immunoglobulin light chain lambda variable domain, | 98.07 | |
| d1hxmb1 | 123 | T-cell antigen receptor {Human (Homo sapiens), del | 98.07 | |
| d1rzfl1 | 111 | Immunoglobulin light chain lambda variable domain, | 98.07 | |
| d1ucta2 | 96 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 98.07 | |
| d1h5ba_ | 113 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.07 | |
| d1ucta2 | 96 | Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa | 98.06 | |
| d1lk2b_ | 99 | beta2-microglobulin {Mouse (Mus musculus) [TaxId: | 98.06 | |
| d1bd2d1 | 111 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.06 | |
| d1j05a_ | 111 | Immunoglobulin light chain kappa variable domain, | 98.06 | |
| d2atpb1 | 115 | CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009 | 98.04 | |
| d1nfde1 | 108 | Immunoglobulin light chain lambda variable domain, | 98.04 | |
| d1qfoa_ | 118 | N-terminal domain of sialoadhesin {Mouse (Mus musc | 98.04 | |
| d1fnga1 | 101 | Class II MHC alpha chain, C-terminal domain {Mouse | 98.03 | |
| d1de4a1 | 94 | Hemochromatosis protein Hfe, alpha-3 domain {Human | 98.03 | |
| d1f3rb2 | 119 | Immunoglobulin light chain kappa variable domain, | 98.03 | |
| d1dr9a2 | 95 | CD80, second domain {Human (Homo sapiens) [TaxId: | 98.02 | |
| d1ac6a_ | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.02 | |
| d1dr9a2 | 95 | CD80, second domain {Human (Homo sapiens) [TaxId: | 98.02 | |
| d1ogad1 | 115 | T-cell antigen receptor {Human (Homo sapiens), alp | 98.01 | |
| d1oaql_ | 110 | Immunoglobulin light chain lambda variable domain, | 98.01 | |
| d1ugna2 | 98 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 98.01 | |
| d1smoa_ | 113 | TREM-1 (triggering receptor expressed on myeloid c | 98.0 | |
| d1mjul1 | 112 | Immunoglobulin light chain kappa variable domain, | 98.0 | |
| d1u3ha1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 98.0 | |
| d1hdmb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 98.0 | |
| d1olla2 | 93 | Ligand binding domain of NK receptor NKp46 {Human | 98.0 | |
| d2atpb1 | 115 | CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009 | 97.99 | |
| d2esve1 | 111 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.99 | |
| d1cd0a_ | 111 | Immunoglobulin light chain lambda variable domain, | 97.98 | |
| d1u9ka_ | 110 | TREM-1 (triggering receptor expressed on myeloid c | 97.98 | |
| d1nkra2 | 99 | Killer cell inhibitory receptor {Human (Homo sapie | 97.98 | |
| d1d5mb1 | 98 | Class II MHC beta chain, C-terminal domain {Human | 97.97 | |
| d1ymmd1 | 96 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.97 | |
| d1n4xl_ | 113 | Immunoglobulin light chain kappa variable domain, | 97.96 | |
| d1uvqa1 | 99 | Class II MHC alpha chain, C-terminal domain {Human | 97.96 | |
| d1xaua_ | 104 | B and T lymphocyte attenuator, Btla {Mouse (Mus mu | 97.96 | |
| d1j8he1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.96 | |
| d2ntsp1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.95 | |
| d1dr9a1 | 105 | CD80, N-terminal domain {Human (Homo sapiens) [Tax | 97.95 | |
| d1q0xl2 | 102 | Immunoglobulin light chain lambda constant domain, | 97.95 | |
| d1de4a1 | 94 | Hemochromatosis protein Hfe, alpha-3 domain {Human | 97.95 | |
| d2gj6d1 | 94 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.94 | |
| d1kgce1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.93 | |
| d2aq2a1 | 110 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.93 | |
| d1ncna_ | 110 | CD86 (b7-2), N-terminal domain {Human (Homo sapien | 97.92 | |
| d1t7va1 | 94 | Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu | 97.92 | |
| d2ij0c1 | 118 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.91 | |
| d2agjh1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 97.9 | |
| d1hxmb1 | 123 | T-cell antigen receptor {Human (Homo sapiens), del | 97.89 | |
| d1ypzf1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.89 | |
| d1dqta_ | 117 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 97.89 | |
| d1uvqb1 | 97 | Class II MHC beta chain, C-terminal domain {Human | 97.89 | |
| d7fabh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.89 | |
| d1h5ba_ | 113 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.88 | |
| d1ncna_ | 110 | CD86 (b7-2), N-terminal domain {Human (Homo sapien | 97.88 | |
| d1nkra1 | 96 | Killer cell inhibitory receptor {Human (Homo sapie | 97.86 | |
| d1ow0a2 | 108 | Immunoglobulin heavy chain alpha constant domain 3 | 97.86 | |
| d1hxma1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.86 | |
| d1hdma1 | 103 | Class II MHC alpha chain, C-terminal domain {Human | 97.85 | |
| d1o0va1 | 104 | Immunoglobulin heavy chain epsilon constant domain | 97.85 | |
| d1nfdb1 | 113 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.85 | |
| d1kxvc_ | 119 | Camelid IG heavy chain variable domain, VHh {Camel | 97.85 | |
| d1ogae1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.84 | |
| d3frua1 | 91 | Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor | 97.83 | |
| d1hxmb2 | 107 | T-cell antigen receptor {Human (Homo sapiens), del | 97.83 | |
| d1ac6a_ | 110 | T-cell antigen receptor {Mouse (Mus musculus), alp | 97.82 | |
| d1ugna1 | 96 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 97.81 | |
| d1fp5a2 | 105 | Immunoglobulin heavy chain epsilon constant domain | 97.81 | |
| d1u9ka_ | 110 | TREM-1 (triggering receptor expressed on myeloid c | 97.8 | |
| d3b5ha2 | 80 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 97.8 | |
| d1rzfl2 | 102 | Immunoglobulin light chain lambda constant domain, | 97.8 | |
| d2bnub1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.8 | |
| d1t7va1 | 94 | Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu | 97.79 | |
| d1ugna2 | 98 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 97.79 | |
| d1nkra1 | 96 | Killer cell inhibitory receptor {Human (Homo sapie | 97.79 | |
| d1pg7x1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.78 | |
| d1dn0b1 | 120 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.78 | |
| d1kgcd1 | 112 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.78 | |
| d2cdeb1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.78 | |
| d1o0va1 | 104 | Immunoglobulin heavy chain epsilon constant domain | 97.78 | |
| d1dqta_ | 117 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 97.77 | |
| d1c5db1 | 117 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.76 | |
| d1j8he1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.75 | |
| d1ow0a2 | 108 | Immunoglobulin heavy chain alpha constant domain 3 | 97.75 | |
| d1iqdb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.75 | |
| d1q0xl2 | 102 | Immunoglobulin light chain lambda constant domain, | 97.75 | |
| d1jnhb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.74 | |
| d1fp5a2 | 105 | Immunoglobulin heavy chain epsilon constant domain | 97.74 | |
| d2fbjh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.74 | |
| d1uvqb1 | 97 | Class II MHC beta chain, C-terminal domain {Human | 97.74 | |
| d1hdma1 | 103 | Class II MHC alpha chain, C-terminal domain {Human | 97.73 | |
| d1i8lc_ | 118 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 97.73 | |
| d1f3dh1 | 115 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.73 | |
| d2g5ra1 | 121 | N-terminal domain of sialic acid binding Ig-like l | 97.73 | |
| d1ypzf1 | 120 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.73 | |
| d7fabh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.73 | |
| d1um5h1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.72 | |
| d1jpth1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 97.72 | |
| d2mhaa1 | 89 | Class I MHC, alpha-3 domain {Mouse (Mus musculus) | 97.72 | |
| d1mfah1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.72 | |
| d1ymmd1 | 96 | T-cell antigen receptor {Human (Homo sapiens), alp | 97.72 | |
| d2jelh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.71 | |
| d1mjuh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.71 | |
| d1qnzh_ | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.71 | |
| d1indh1 | 114 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.71 | |
| d1ogae2 | 127 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.71 | |
| d2h26a1 | 96 | CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T | 97.7 | |
| d1zvya1 | 124 | Camelid IG heavy chain variable domain, VHh {Camel | 97.7 | |
| d1a2yb_ | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.7 | |
| d1sjva_ | 107 | Camelid IG heavy chain variable domain, VHh {Llama | 97.7 | |
| d1kxvc_ | 119 | Camelid IG heavy chain variable domain, VHh {Camel | 97.69 | |
| d2p49b1 | 121 | Camelid IG heavy chain variable domain, VHh {Camel | 97.69 | |
| d2ck0h1 | 109 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.69 | |
| d1lo4h1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.69 | |
| d1nlbh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.69 | |
| d1rz7h1 | 119 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.69 | |
| d1oari_ | 103 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.68 | |
| d1dlfh_ | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.68 | |
| d1nlbh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.68 | |
| d1mqkh_ | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.67 | |
| d1dn0b1 | 120 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.67 | |
| d1ugna1 | 96 | Ligand binding domain of lir-1 (ilt2) {Human (Homo | 97.67 | |
| d1fltx_ | 95 | Second domain of the Flt-1 receptor {Human (Homo s | 97.66 | |
| d1zvya1 | 124 | Camelid IG heavy chain variable domain, VHh {Camel | 97.66 | |
| d2esve1 | 111 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.66 | |
| d1yjdc1 | 118 | CD28 {Human (Homo sapiens) [TaxId: 9606]} | 97.66 | |
| d1vgeh1 | 122 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.66 | |
| d1ct8b1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.65 | |
| d2nxyd1 | 128 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.65 | |
| d1xaua_ | 104 | B and T lymphocyte attenuator, Btla {Mouse (Mus mu | 97.64 | |
| d1j05b_ | 121 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.64 | |
| d2ck0h1 | 109 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.64 | |
| d1yjdc1 | 118 | CD28 {Human (Homo sapiens) [TaxId: 9606]} | 97.63 | |
| d1mjul2 | 107 | Immunoglobulin light chain kappa constant domain, | 97.63 | |
| d1jpth1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 97.62 | |
| d1op3h1 | 125 | Immunoglobulin heavy chain variable domain, VH {En | 97.62 | |
| d1c5db1 | 117 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.61 | |
| d1k5na1 | 95 | Class I MHC, alpha-3 domain {Human (Homo sapiens) | 97.61 | |
| d1kcvh2 | 101 | Immunoglobulin heavy chain gamma constant domain 1 | 97.61 | |
| d1eapb1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.61 | |
| d1ad9b1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 97.61 | |
| d1bz7b1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.6 | |
| d2h26a1 | 96 | CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T | 97.6 | |
| d1igtb4 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 97.6 | |
| d1jnhb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.6 | |
| d3frua1 | 91 | Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor | 97.6 | |
| d1rzfl2 | 102 | Immunoglobulin light chain lambda constant domain, | 97.6 | |
| d1etzb1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.59 | |
| d1rjca1 | 126 | Camelid IG heavy chain variable domain, VHh {Camel | 97.59 | |
| d2bnub1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.59 | |
| d2ntsp1 | 113 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.59 | |
| d1ol0a_ | 121 | Immunoglobulin heavy chain variable domain, VH {En | 97.59 | |
| d1ai1h1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.59 | |
| d1nfdb1 | 113 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.59 | |
| d1i8lc_ | 118 | Immunoreceptor CTLA-4 (CD152), N-terminal fragment | 97.59 | |
| d1lmka1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.58 | |
| d2fx7h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.58 | |
| d1tjgh1 | 132 | Immunoglobulin heavy chain variable domain, VH {En | 97.58 | |
| d1eapb1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.58 | |
| d1rhhb1 | 130 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.58 | |
| d1rihh1 | 125 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.57 | |
| d2fbjh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.57 | |
| d1q9rb1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.57 | |
| d1vgeh1 | 122 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.57 | |
| d1kgce1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.56 | |
| d1f3dh1 | 115 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.56 | |
| d1ieha_ | 135 | Camelid IG heavy chain variable domain, VHh {Llama | 97.56 | |
| d1dfbh1 | 126 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.56 | |
| d2agjh1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 97.55 | |
| d1c5cl2 | 107 | Immunoglobulin light chain kappa constant domain, | 97.55 | |
| d1n0xh1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.55 | |
| d1r0ah1 | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.54 | |
| d1hyrc1 | 94 | Class I MHC homolog, alpha-3 domain {Human (Homo s | 97.54 | |
| d1l6xa2 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 97.54 | |
| d2b1hh1 | 124 | Immunoglobulin heavy chain variable domain, VH {En | 97.54 | |
| d1qfoa_ | 118 | N-terminal domain of sialoadhesin {Mouse (Mus musc | 97.54 | |
| d1i3ua_ | 127 | Camelid IG heavy chain variable domain, VHh {Llama | 97.54 | |
| d3b5ha2 | 80 | Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960 | 97.54 | |
| d1cqka_ | 101 | Immunoglobulin heavy chain gamma constant domain 3 | 97.53 | |
| d1ogae1 | 114 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.52 | |
| d1iqdb1 | 117 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.51 | |
| d1dfbh1 | 126 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.51 | |
| d1indh1 | 114 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.51 | |
| d1i1ca2 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 97.51 | |
| d1a2yb_ | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.5 | |
| d2nxyd1 | 128 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.5 | |
| d1lo4h1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.5 | |
| d1oari_ | 103 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.5 | |
| d2jelh1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.49 | |
| d1mfah1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.49 | |
| d1rz7h1 | 119 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.49 | |
| d1mqkh_ | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.48 | |
| d1dlfh_ | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.48 | |
| d1um5h1 | 117 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.48 | |
| d1dn0b2 | 105 | Immunoglobulin heavy chain mu constant domain 1, C | 97.48 | |
| d1rzfh1 | 133 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.48 | |
| d1ncwh1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.48 | |
| d1kcvh2 | 101 | Immunoglobulin heavy chain gamma constant domain 1 | 97.47 | |
| d2fb4h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.46 | |
| d1ol0a_ | 121 | Immunoglobulin heavy chain variable domain, VH {En | 97.45 | |
| d1op3h1 | 125 | Immunoglobulin heavy chain variable domain, VH {En | 97.44 | |
| d2p49b1 | 121 | Camelid IG heavy chain variable domain, VHh {Camel | 97.44 | |
| d1mjuh2 | 102 | Immunoglobulin heavy chain gamma constant domain 1 | 97.44 | |
| d1nfde2 | 104 | Immunoglobulin light chain lambda constant domain, | 97.44 | |
| d1yedb1 | 124 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.44 | |
| d1rzga1 | 130 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.43 | |
| d1bz7b1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.43 | |
| d1rjca1 | 126 | Camelid IG heavy chain variable domain, VHh {Camel | 97.43 | |
| d1ogae2 | 127 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.43 | |
| d1pg7x1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.43 | |
| d3c2ah1 | 131 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.42 | |
| d1ai1h1 | 120 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.42 | |
| d1ncwh1 | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.41 | |
| d1igtb4 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 97.4 | |
| d1mjul2 | 107 | Immunoglobulin light chain kappa constant domain, | 97.39 | |
| d2fx7h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.39 | |
| d1ct8b1 | 118 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.39 | |
| d1mjuh2 | 102 | Immunoglobulin heavy chain gamma constant domain 1 | 97.39 | |
| d1etzb1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.38 | |
| d1qnzh_ | 119 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.38 | |
| d1hxma2 | 86 | T-cell antigen receptor {Human (Homo sapiens), gam | 97.38 | |
| d2fb4h1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.38 | |
| d1yedb1 | 124 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.37 | |
| d1fn4b1 | 116 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.37 | |
| d2mhaa1 | 89 | Class I MHC, alpha-3 domain {Mouse (Mus musculus) | 97.37 | |
| d1ieha_ | 135 | Camelid IG heavy chain variable domain, VHh {Llama | 97.37 | |
| d1hxmb2 | 107 | T-cell antigen receptor {Human (Homo sapiens), del | 97.36 | |
| d3cx5j1 | 127 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.36 | |
| d1nfdf1 | 121 | Immunoglobulin heavy chain variable domain, VH {Ha | 97.36 | |
| d1sjva_ | 107 | Camelid IG heavy chain variable domain, VHh {Llama | 97.36 | |
| d2cdeb1 | 112 | T-cell antigen receptor {Human (Homo sapiens), bet | 97.35 | |
| d1n0xh1 | 127 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.34 | |
| d1cqka_ | 101 | Immunoglobulin heavy chain gamma constant domain 3 | 97.34 | |
| d1ad9b1 | 120 | Immunoglobulin heavy chain variable domain, VH {En | 97.33 | |
| d1mjuh1 | 116 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.32 | |
| d3cx5j1 | 127 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.32 | |
| d1rhhb1 | 130 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.32 | |
| d1j05b_ | 121 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.32 | |
| d1rzfh1 | 133 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.32 | |
| d1lmka1 | 126 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.31 | |
| d1hyrc1 | 94 | Class I MHC homolog, alpha-3 domain {Human (Homo s | 97.3 | |
| d1l6xa2 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 97.3 | |
| d3c2ah1 | 131 | Immunoglobulin heavy chain variable domain, VH {Hu | 97.3 | |
| d1b2wh1 | 117 | Immunoglobulin heavy chain variable domain, VH {En | 97.3 | |
| d1rihh1 | 125 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.3 | |
| d1i3ua_ | 127 | Camelid IG heavy chain variable domain, VHh {Llama | 97.29 | |
| d1q9rb1 | 122 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.28 | |
| d1i1ca2 | 102 | Immunoglobulin heavy chain gamma constant domain 3 | 97.27 | |
| d1fn4b1 | 116 | Immunoglobulin heavy chain variable domain, VH {Ra | 97.25 | |
| d1nfdf1 | 121 | Immunoglobulin heavy chain variable domain, VH {Ha | 97.24 | |
| d1tjgh1 | 132 | Immunoglobulin heavy chain variable domain, VH {En | 97.24 | |
| d1r0ah1 | 123 | Immunoglobulin heavy chain variable domain, VH {Mo | 97.24 | |
| d1k5na1 | 95 | Class I MHC, alpha-3 domain {Human (Homo sapiens) | 97.22 | |
| d1fo0b_ | 112 | T-cell antigen receptor {Mouse (Mus musculus), bet | 97.2 | |
| d1c5cl2 | 107 | Immunoglobulin light chain kappa constant domain, | 97.2 |
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.78 E-value=3.3e-19 Score=145.89 Aligned_cols=96 Identities=25% Similarity=0.273 Sum_probs=89.4
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 770 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 770 (805)
.|+|...|.+. .+.+|+.+.|.|.+. |.|.|.|+|+|||+.|..+.++.+..+++...|.|.++..+|+|.|+|.|.
T Consensus 1 ~P~f~~~p~~~-~v~~G~~~~l~C~~~--g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 77 (97)
T d1koaa1 1 QPRFIVKPYGT-EVGEGQSANFYCRVI--ASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAK 77 (97)
T ss_dssp SCEEEECCCCC-EEETTSCEEEEEEEE--CSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEE
T ss_pred CCEEEEeCCCE-EEeCCCcEEEEEEEE--EcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEE
Confidence 48899999999 999999999999999 999999999999999999999888888888999999999999999999999
Q ss_pred cCCccEEEEEEEEEEEeCC
Q psy2166 771 NKWGQAEISVNLECVVWSP 789 (805)
Q Consensus 771 N~~G~~~~~~~l~V~~~~~ 789 (805)
|.+|.++.++.|+|...++
T Consensus 78 N~~G~~~~~~~l~V~~~~~ 96 (97)
T d1koaa1 78 NSYGTKEEIVFLNVTRHSE 96 (97)
T ss_dssp ETTEEEEEEECCEEECSCC
T ss_pred ECCCEEEEEEEEEEeecCC
Confidence 9999999999999976443
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=2.2e-18 Score=141.96 Aligned_cols=94 Identities=26% Similarity=0.320 Sum_probs=87.4
Q ss_pred CeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEc
Q psy2166 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 771 (805)
Q Consensus 692 P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N 771 (805)
|.|...+.+. .+.+|+.+.|.|.+. |.|.+.|.|+|||+.+..++++++....+..+|.|.++..+|+|.|+|.|.|
T Consensus 1 P~~~~~p~~~-~v~~G~~~~l~C~v~--g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 77 (101)
T d2cqva1 1 PQIIQFPEDQ-KVRAGESVELFGKVT--GTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN 77 (101)
T ss_dssp CEESCCCCSE-EEETTCCEEEEEEEE--SSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEEC
T ss_pred CeEEeeCCcE-EEeCCCcEEEEEEEE--ecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEE
Confidence 5677777888 999999999999999 9999999999999999999999988888888999999999999999999999
Q ss_pred CCccEEEEEEEEEEEeC
Q psy2166 772 KWGQAEISVNLECVVWS 788 (805)
Q Consensus 772 ~~G~~~~~~~l~V~~~~ 788 (805)
.+|.++.++.|.|...|
T Consensus 78 ~~G~~~~~~~l~V~~~P 94 (101)
T d2cqva1 78 KLGSRQAQVNLTVVDKP 94 (101)
T ss_dssp SSCEEECCEEEEEECSC
T ss_pred CCCEEEEEEEEEEEecC
Confidence 99999999999998654
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.75 E-value=2.7e-18 Score=140.68 Aligned_cols=94 Identities=24% Similarity=0.270 Sum_probs=86.6
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEE-EeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT-VHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
++|.|...+.+. .+.+|+.+.|.|.+. |+|.|.|+|+|||.+|..+.++.+ ..+++.+.|+|.++..+|+|.|+|.
T Consensus 3 eaP~f~~~~~~~-~v~~g~~v~l~c~v~--g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~ 79 (98)
T d1g1ca_ 3 EAPKIFERIQSQ-TVGQGSDAHFRVRVV--GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVK 79 (98)
T ss_dssp EEEEEEECCCCE-EEETTSCEEEEEEEE--EESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred cCCeEecCCCcE-EEcCCCcEEEEEEEE--EecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEE
Confidence 579999999998 999999999999999 999999999999999999888655 4567788999999999999999999
Q ss_pred EEcCCccEEEEEEEEEEE
Q psy2166 769 ATNKWGQAEISVNLECVV 786 (805)
Q Consensus 769 a~N~~G~~~~~~~l~V~~ 786 (805)
|.|.+|.++.++.|.|+.
T Consensus 80 a~N~~G~~~~~~~L~V~~ 97 (98)
T d1g1ca_ 80 AINIAGETSSHAFLLVQA 97 (98)
T ss_dssp EEETTEEEEEEEEEEEEC
T ss_pred EEECCcEEEEEEEEEEEE
Confidence 999999999999999964
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.75 E-value=2e-18 Score=139.84 Aligned_cols=92 Identities=14% Similarity=0.215 Sum_probs=87.0
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 770 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 770 (805)
+|.|...+.+. .+.+|+++.|.|.+. |+|.|.++|+|||..+..+.++.+...++...|.|.++..+|+|.|+|.|.
T Consensus 2 ~P~i~~~~~~~-~v~~G~~~~l~c~~~--g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~ 78 (93)
T d1wiua_ 2 KPKILTASRKI-KIKAGFTHNLEVDFI--GAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVK 78 (93)
T ss_dssp CCEECCCCCEE-EECSSBCCEEEEEEE--CCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEE
T ss_pred CCeEEeCCCcE-EEeCCCeEEEEEEEE--EecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEE
Confidence 68888888888 999999999999999 999999999999999999999998888888999999999999999999999
Q ss_pred cCCccEEEEEEEEEE
Q psy2166 771 NKWGQAEISVNLECV 785 (805)
Q Consensus 771 N~~G~~~~~~~l~V~ 785 (805)
|.+|+++.++.|+|+
T Consensus 79 N~~G~~~~~~~l~V~ 93 (93)
T d1wiua_ 79 NELGEDEAIFEVIVQ 93 (93)
T ss_dssp ETTEEEEEEEEEEEC
T ss_pred ECCCEEEEEEEEEEC
Confidence 999999999999884
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.73 E-value=4.5e-18 Score=135.93 Aligned_cols=87 Identities=25% Similarity=0.421 Sum_probs=80.5
Q ss_pred CeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEc
Q psy2166 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 771 (805)
Q Consensus 692 P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N 771 (805)
|.|...+.+. .+..|+++.|.|.+. |.|.|.|+|+|||+++..+.++.+. .+ .|.|.++..+|+|.|+|.|.|
T Consensus 2 P~f~~~~~~~-~v~~G~~~~l~C~~~--g~P~p~v~W~k~g~~i~~~~~~~~~--~~--~L~i~~v~~~D~G~Y~C~a~N 74 (89)
T d1cs6a4 2 PDWLDVITDT-EADIGSDLRWSCVAS--GKPRPAVRWLRDGQPLASQNRIEVS--GG--ELRFSKLVLEDSGMYQCVAEN 74 (89)
T ss_dssp EEEEECCCCE-EEETTCCEEEECEEE--EESCCEEEEEETTEECCCCSSEEEE--TT--EEEESSCCGGGCEEEEEEEEE
T ss_pred CCeEEECCCE-EECCCCcEEEEEEEE--EEcCCEEEEEEeeccccccceeeee--ee--eEEEEeecccCCEEEEEEEEe
Confidence 7888899999 999999999999999 9999999999999999998887653 33 699999999999999999999
Q ss_pred CCccEEEEEEEEEE
Q psy2166 772 KWGQAEISVNLECV 785 (805)
Q Consensus 772 ~~G~~~~~~~l~V~ 785 (805)
.+|..+.++.|+|+
T Consensus 75 ~~G~~~~~~~l~V~ 88 (89)
T d1cs6a4 75 KHGTVYASAELTVQ 88 (89)
T ss_dssp TTEEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEEE
Confidence 99999999999986
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Probab=99.73 E-value=8.9e-18 Score=138.68 Aligned_cols=93 Identities=25% Similarity=0.378 Sum_probs=86.2
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEe-eCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH-AFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
.+|.|...+.++ .+.+|+.+.|.|.+. |.|.|.|.|+|||++|..+.++.+.. ..+..+|.|.++..+|+|.|+|.
T Consensus 7 ~~P~f~~~~~~~-~v~~G~~~~l~C~~~--g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 83 (102)
T d1fhga_ 7 VKPYFTKTILDM-EVVEGSAARFDCKVE--GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCK 83 (102)
T ss_dssp EEEEEEECCCCE-EEETTSCEEEEEEEE--EESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEE
T ss_pred CCCeEEcCCCcE-EEecCCcEEEEEEEE--eccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEE
Confidence 478999999998 999999999999999 99999999999999999999988755 45678999999999999999999
Q ss_pred EEcCCccEEEEEEEEEE
Q psy2166 769 ATNKWGQAEISVNLECV 785 (805)
Q Consensus 769 a~N~~G~~~~~~~l~V~ 785 (805)
|.|.+|..+.++.|.|+
T Consensus 84 a~N~~G~~~~~~~L~V~ 100 (102)
T d1fhga_ 84 AVNSLGEATCTAELLVE 100 (102)
T ss_dssp EEETTEEEEEEEEEEEE
T ss_pred EEECCcEEEEEEEEEEE
Confidence 99999999999999986
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.69 E-value=6.3e-18 Score=136.13 Aligned_cols=89 Identities=24% Similarity=0.315 Sum_probs=81.8
Q ss_pred eeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy2166 694 FTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKW 773 (805)
Q Consensus 694 ~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 773 (805)
|...|.++ .+.+|+++.|.|.+. |.|.|.|.|++||..+..+.++.+.......+|.|.++..+|+|.|+|.|.|.+
T Consensus 2 ii~~P~~~-~v~~G~~~~l~C~~~--g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~ 78 (91)
T d1tnna_ 2 ILTKPRSM-TVYEGESARFSCDTD--GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSE 78 (91)
T ss_dssp CSBCCCCE-ECSSSSCCCEEEECC--CSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSS
T ss_pred EEeCCcCE-EEeCCCcEEEEEEEE--EEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECC
Confidence 34456677 999999999999998 999999999999999999999888888888899999999999999999999999
Q ss_pred ccEEEEEEEEEE
Q psy2166 774 GQAEISVNLECV 785 (805)
Q Consensus 774 G~~~~~~~l~V~ 785 (805)
|.++.++.|.|+
T Consensus 79 G~~~~~~~l~V~ 90 (91)
T d1tnna_ 79 GKQEAEFTLTIQ 90 (91)
T ss_dssp CBCCEEEEEECC
T ss_pred CEEEEEEEEEEE
Confidence 999999999884
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.68 E-value=5.6e-17 Score=129.54 Aligned_cols=87 Identities=24% Similarity=0.377 Sum_probs=74.8
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 770 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 770 (805)
+|.|...+.+.+.+.+|+.+.|.|.+. |.|.|.|+|+|||+++..+ ++.+. .+ .|.|.++..+|+|.|+|.|.
T Consensus 2 aP~f~~~p~~~~~v~~G~~~~l~C~~~--g~P~p~v~W~~~~~~i~~~-~~~~~--~~--~L~i~~v~~~d~G~Y~C~a~ 74 (89)
T d1biha4 2 APKYEQKPEKVIVVKQGQDVTIPCKVT--GLPAPNVVWSHNAKPLSGG-RATVT--DS--GLVIKGVKNGDKGYYGCRAT 74 (89)
T ss_dssp EEEEEECCCSEEEECTTSCEEEECEEE--EESCCCCEEEETTEECCSS-SEEEE--TT--EEEESSCCSTTCEEEEEEEE
T ss_pred CCeEEECCCCCEEEeCCCeEEEEEEEE--EeCCCEEEEEeCCccCccc-cEEEe--ee--eEEECCCChhhCEEEEEEEE
Confidence 577887776644889999999999999 9999999999999999654 55433 22 59999999999999999999
Q ss_pred cCCccEEEEEEEEE
Q psy2166 771 NKWGQAEISVNLEC 784 (805)
Q Consensus 771 N~~G~~~~~~~l~V 784 (805)
|.+|....++.|.|
T Consensus 75 N~~G~~~~~~~l~V 88 (89)
T d1biha4 75 NEHGDKYFETLVQV 88 (89)
T ss_dssp ETTEEEEEEEEEEE
T ss_pred ECCCEEEEEEEEEE
Confidence 99999999988887
|
| >d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.66 E-value=1.8e-16 Score=129.23 Aligned_cols=94 Identities=21% Similarity=0.272 Sum_probs=86.2
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEE
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAW 144 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 144 (805)
.|.|+..+. ++.+.+|+.+.|.|.+. |.|.+.|+|+|||..|..+.++.+..+++.++|.|.+++.+|+|.|+|.|.
T Consensus 1 ~P~f~~~p~-~~~v~~G~~~~l~C~~~--g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 77 (97)
T d1koaa1 1 QPRFIVKPY-GTEVGEGQSANFYCRVI--ASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAK 77 (97)
T ss_dssp SCEEEECCC-CCEEETTSCEEEEEEEE--CSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEE
T ss_pred CCEEEEeCC-CEEEeCCCcEEEEEEEE--EcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEE
Confidence 488888766 67899999999999999 789999999999999999999998888889999999999999999999999
Q ss_pred eCCeeEEEEEEEEEecc
Q psy2166 145 NLAGETFTSTTIYCSTK 161 (805)
Q Consensus 145 n~~g~~~~~~~l~V~~~ 161 (805)
|..|.....+.|.|...
T Consensus 78 N~~G~~~~~~~l~V~~~ 94 (97)
T d1koaa1 78 NSYGTKEEIVFLNVTRH 94 (97)
T ss_dssp ETTEEEEEEECCEEECS
T ss_pred ECCCEEEEEEEEEEeec
Confidence 99999999999998753
|
| >d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.66 E-value=4.6e-16 Score=127.09 Aligned_cols=94 Identities=21% Similarity=0.341 Sum_probs=83.8
Q ss_pred CCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceE-EEecCcEEEEEEcccccCCCeEEEEE
Q psy2166 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK-TTADFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 64 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
.+|.|+..+. +..+.+|+.++|.|.+. |.|.|.|+|+|||.+|..+.++. +..+++.++|.|.+++.+|+|.|+|.
T Consensus 3 eaP~f~~~~~-~~~v~~g~~v~l~c~v~--g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~ 79 (98)
T d1g1ca_ 3 EAPKIFERIQ-SQTVGQGSDAHFRVRVV--GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVK 79 (98)
T ss_dssp EEEEEEECCC-CEEEETTSCEEEEEEEE--EESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred cCCeEecCCC-cEEEcCCCcEEEEEEEE--EecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEE
Confidence 5688888776 78999999999999998 68999999999999999887754 44566788999999999999999999
Q ss_pred EEeCCeeEEEEEEEEEec
Q psy2166 143 AWNLAGETFTSTTIYCST 160 (805)
Q Consensus 143 a~n~~g~~~~~~~l~V~~ 160 (805)
|.|..|.....+.|.|+.
T Consensus 80 a~N~~G~~~~~~~L~V~~ 97 (98)
T d1g1ca_ 80 AINIAGETSSHAFLLVQA 97 (98)
T ss_dssp EEETTEEEEEEEEEEEEC
T ss_pred EEECCcEEEEEEEEEEEE
Confidence 999999999999999875
|
| >d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=6e-16 Score=127.14 Aligned_cols=95 Identities=22% Similarity=0.347 Sum_probs=85.0
Q ss_pred CceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEc
Q psy2166 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATN 575 (805)
Q Consensus 496 P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 575 (805)
|+|...+.+.. +.+|+++.|.|.+. |.|.+.++|+|||+.|..+.++.+...++.+.|.|.+++.+|+|.|+|.|.|
T Consensus 1 P~~~~~p~~~~-v~~G~~~~l~C~v~--g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 77 (101)
T d2cqva1 1 PQIIQFPEDQK-VRAGESVELFGKVT--GTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN 77 (101)
T ss_dssp CEESCCCCSEE-EETTCCEEEEEEEE--SSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEEC
T ss_pred CeEEeeCCcEE-EeCCCcEEEEEEEE--ecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEE
Confidence 55655555544 89999999999999 7899999999999999998899988888888999999999999999999999
Q ss_pred CCcceEEEEEEEEeeeee
Q psy2166 576 KYGSDVTKASLKCVSKTN 593 (805)
Q Consensus 576 ~~g~~~~~~~l~V~~~~~ 593 (805)
..|..+.++.|.|...|.
T Consensus 78 ~~G~~~~~~~l~V~~~P~ 95 (101)
T d2cqva1 78 KLGSRQAQVNLTVVDKPD 95 (101)
T ss_dssp SSCEEECCEEEEEECSCS
T ss_pred CCCEEEEEEEEEEEecCC
Confidence 999999999999998764
|
| >d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.64 E-value=5.9e-16 Score=125.02 Aligned_cols=92 Identities=16% Similarity=0.237 Sum_probs=84.1
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEE
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAW 144 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 144 (805)
+|.|+.++. ++.+.+|++++|.|.+. |.|.|.+.|+|||..+..+.++.+...+..++|.|.+++.+|+|.|+|.|.
T Consensus 2 ~P~i~~~~~-~~~v~~G~~~~l~c~~~--g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~ 78 (93)
T d1wiua_ 2 KPKILTASR-KIKIKAGFTHNLEVDFI--GAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVK 78 (93)
T ss_dssp CCEECCCCC-EEEECSSBCCEEEEEEE--CCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEE
T ss_pred CCeEEeCCC-cEEEeCCCeEEEEEEEE--EecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEE
Confidence 577776554 78999999999999999 799999999999999999999999888888999999999999999999999
Q ss_pred eCCeeEEEEEEEEEe
Q psy2166 145 NLAGETFTSTTIYCS 159 (805)
Q Consensus 145 n~~g~~~~~~~l~V~ 159 (805)
|..|.....+.|.|+
T Consensus 79 N~~G~~~~~~~l~V~ 93 (93)
T d1wiua_ 79 NELGEDEAIFEVIVQ 93 (93)
T ss_dssp ETTEEEEEEEEEEEC
T ss_pred ECCCEEEEEEEEEEC
Confidence 999999998888874
|
| >d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.63 E-value=9.5e-16 Score=122.15 Aligned_cols=87 Identities=20% Similarity=0.439 Sum_probs=78.7
Q ss_pred CeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEe
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWN 145 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 145 (805)
|.|+..+. +..+.+|+.++|.|.+. |.|.|.|+|+|||.++..+.++.+... +|.|.+++.+|+|.|+|.|.|
T Consensus 2 P~f~~~~~-~~~v~~G~~~~l~C~~~--g~P~p~v~W~k~g~~i~~~~~~~~~~~----~L~i~~v~~~D~G~Y~C~a~N 74 (89)
T d1cs6a4 2 PDWLDVIT-DTEADIGSDLRWSCVAS--GKPRPAVRWLRDGQPLASQNRIEVSGG----ELRFSKLVLEDSGMYQCVAEN 74 (89)
T ss_dssp EEEEECCC-CEEEETTCCEEEECEEE--EESCCEEEEEETTEECCCCSSEEEETT----EEEESSCCGGGCEEEEEEEEE
T ss_pred CCeEEECC-CEEECCCCcEEEEEEEE--EEcCCEEEEEEeeccccccceeeeeee----eEEEEeecccCCEEEEEEEEe
Confidence 77877666 78999999999999999 689999999999999999888877543 799999999999999999999
Q ss_pred CCeeEEEEEEEEEe
Q psy2166 146 LAGETFTSTTIYCS 159 (805)
Q Consensus 146 ~~g~~~~~~~l~V~ 159 (805)
..|.....+.|.|+
T Consensus 75 ~~G~~~~~~~l~V~ 88 (89)
T d1cs6a4 75 KHGTVYASAELTVQ 88 (89)
T ss_dssp TTEEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEEE
Confidence 99999999989885
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=3.1e-16 Score=128.74 Aligned_cols=94 Identities=21% Similarity=0.331 Sum_probs=75.7
Q ss_pred CCeeeecCCcc-cccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCC--eEEEeeCcEEEEEEcCCCCCCCEEEEE
Q psy2166 691 PPQFTSEFQHL-SNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR--IRTVHAFGMVVLEILGTKIEDTGVYTC 767 (805)
Q Consensus 691 ~P~~~~~~~~~-~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C 767 (805)
||.|...+... +++..|+.+.|.|.+. |.|.|.|+|+|+|+.+..... ...........|.|.++..+|+|.|+|
T Consensus 3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~--g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 80 (100)
T d1qz1a3 3 PPTVQARQSIVNATANLGQSVTLVCDAD--GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVC 80 (100)
T ss_dssp EEEEEESCSEEEEETTSCCCEEEEEEEE--EESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEE
T ss_pred CCEEEeCCCceeEEEcCCCCEEEEEEEE--EecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEE
Confidence 67777654432 2678999999999999 999999999999999876532 222233344589999999999999999
Q ss_pred EEEcCCccEEEEEEEEEEE
Q psy2166 768 RATNKWGQAEISVNLECVV 786 (805)
Q Consensus 768 ~a~N~~G~~~~~~~l~V~~ 786 (805)
.|.|.+|.++.++.|+|..
T Consensus 81 ~a~N~~G~~~~~~~l~V~~ 99 (100)
T d1qz1a3 81 IAENKAGEQDASIHLKVFA 99 (100)
T ss_dssp EEEETTEEEEEEEEEEEEC
T ss_pred EEEECCCEEEEEEEEEEEE
Confidence 9999999999999999964
|
| >d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Telokin species: Turkey (Meleagris gallopavo) [TaxId: 9103]
Probab=99.63 E-value=1.7e-15 Score=124.74 Aligned_cols=94 Identities=24% Similarity=0.483 Sum_probs=83.8
Q ss_pred cCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEec-CcEEEEEEcccccCCCeEEEE
Q psy2166 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTAD-FGFVTLDLTEVYDRDQGIYTC 141 (805)
Q Consensus 63 ~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C 141 (805)
..+|.|+..+. ++.+.+|++++|.|.+. |.|.|.|.|+|||..|..+.++.+..+ .+.++|.|.+++.+|+|.|+|
T Consensus 6 ~~~P~f~~~~~-~~~v~~G~~~~l~C~~~--g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 82 (102)
T d1fhga_ 6 HVKPYFTKTIL-DMEVVEGSAARFDCKVE--GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC 82 (102)
T ss_dssp CEEEEEEECCC-CEEEETTSCEEEEEEEE--EESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEE
T ss_pred CCCCeEEcCCC-cEEEecCCcEEEEEEEE--eccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEE
Confidence 34678877665 78999999999999999 688999999999999999999888654 467899999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEe
Q psy2166 142 RAWNLAGETFTSTTIYCS 159 (805)
Q Consensus 142 ~a~n~~g~~~~~~~l~V~ 159 (805)
.|.|..|....++.|.|+
T Consensus 83 ~a~N~~G~~~~~~~L~V~ 100 (102)
T d1fhga_ 83 KAVNSLGEATCTAELLVE 100 (102)
T ss_dssp EEEETTEEEEEEEEEEEE
T ss_pred EEEECCcEEEEEEEEEEE
Confidence 999999999999999885
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.62 E-value=5.6e-16 Score=124.61 Aligned_cols=90 Identities=19% Similarity=0.250 Sum_probs=77.9
Q ss_pred CeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEe-eCcEEEEEEcCCCCCCCEEEEEEEE
Q psy2166 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH-AFGMVVLEILGTKIEDTGVYTCRAT 770 (805)
Q Consensus 692 P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~ 770 (805)
+.|...|.+. .+.+|+.+.|.|.+. |.|.|.|+|+|+|..+....+..+.. ..+ .|.|.++..+|+|.|+|.|.
T Consensus 2 ~~F~~~P~~~-~v~~G~~~~l~C~v~--g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~ 76 (92)
T d1epfa2 2 LMFKNAPTPQ-EFKEGEDAVIVCDVV--SSLPPTIIWKHKGRDVILKKDVRFIVLSNN--YLQIRGIKKTDEGTYRCEGR 76 (92)
T ss_dssp SEEEECCSSE-ECCTTSCEEECCEEE--CSSCCEEEEEETTEEGGGGCCTTEEECTTS--CEEETTCCGGGCEEEEEEEE
T ss_pred cEEEEcCCCE-EEeCCCcEEEEEEEe--ecCCCeEEEEEcCcccccccceeeeeeeee--eEEECCCCHHhCEEEEEEEE
Confidence 6788888898 999999999999999 99999999999999988876544333 333 59999999999999999999
Q ss_pred cCCccEEEEEEEEEEE
Q psy2166 771 NKWGQAEISVNLECVV 786 (805)
Q Consensus 771 N~~G~~~~~~~l~V~~ 786 (805)
|..|.......++|.+
T Consensus 77 n~~~~~~~~~~i~ViV 92 (92)
T d1epfa2 77 ILARGEINFKDIQVIV 92 (92)
T ss_dssp EGGGTEEEEEEEEEEC
T ss_pred ECcCCEEEEEEEEEEC
Confidence 9999888888888753
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Probab=99.61 E-value=2e-16 Score=128.79 Aligned_cols=81 Identities=25% Similarity=0.363 Sum_probs=69.9
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEE-EeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT-VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVN 781 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 781 (805)
.+.+|+++.|.|.+. |+|.|.|+|+|||+++..+.++.. ....+..+|.|.++..+|+|.|+|.|.|.+|.++.+++
T Consensus 16 ~v~~G~~v~l~C~~~--g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 93 (97)
T d3dara1 16 AVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 93 (97)
T ss_dssp EECTTCCEEEECCEE--EESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred EECCCCcEEEEEEEe--EECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEE
Confidence 688999999999999 999999999999999987654322 22233348999999999999999999999999999999
Q ss_pred EEEE
Q psy2166 782 LECV 785 (805)
Q Consensus 782 l~V~ 785 (805)
|+|.
T Consensus 94 l~Vl 97 (97)
T d3dara1 94 LDVV 97 (97)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9983
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.61 E-value=4.1e-16 Score=125.24 Aligned_cols=87 Identities=16% Similarity=0.240 Sum_probs=72.1
Q ss_pred CCCeeeec-CCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 690 RPPQFTSE-FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 690 ~~P~~~~~-~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
.+|.|... +.+. .+.+|+.++|.|.+. |+|.|.|+|+|++..+.... ..+++ +|.|.++..+|+|.|+|.
T Consensus 3 ~~P~i~~~~p~~~-~~~~G~~v~l~C~~~--g~P~p~i~W~k~~~~~~~~~----~~~~~--~L~I~~v~~~D~G~Y~C~ 73 (91)
T d1cs6a3 3 YAPSIKAKFPADT-YALTGQMVTLECFAF--GNPVPQIKWRKLDGSQTSKW----LSSEP--LLHIQNVDFEDEGTYECE 73 (91)
T ss_dssp EEEEEEECCCSEE-EEETTCCEEEECEEE--EESCCEEEEEECCSCCSCCC----SBSSS--EEEECSCCGGGCEEEEEE
T ss_pred cCCeEEeeCCCcE-EEecCCcEEEEEEEE--EccCCEEEEEecccccceEe----eeeee--EEEeCCCCccCCEEEEEE
Confidence 46777664 5677 999999999999999 99999999999775433221 22233 699999999999999999
Q ss_pred EEcCCccEEEEEEEEEE
Q psy2166 769 ATNKWGQAEISVNLECV 785 (805)
Q Consensus 769 a~N~~G~~~~~~~l~V~ 785 (805)
|.|.+|.++.+++|.|+
T Consensus 74 a~N~~G~~~~~~~l~V~ 90 (91)
T d1cs6a3 74 AENIKGRDTYQGRIIIH 90 (91)
T ss_dssp EEETTEEEEEEEEEEEE
T ss_pred EEECCCEEEEEEEEEEE
Confidence 99999999999999986
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=1.9e-15 Score=124.52 Aligned_cols=93 Identities=18% Similarity=0.242 Sum_probs=79.5
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCe-EEEEEECCEE----cc--CCCCeEEEeeCcEEEEEEcCCC-CCC
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKP----IE--ASHRIRTVHAFGMVVLEILGTK-IED 761 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~-~v~W~~~g~~----l~--~~~~~~~~~~~~~~~L~i~~v~-~~d 761 (805)
.||.|...+.+. .+.+|+.+.|.|.+. |.|+| .++|+|++.. +. ...++.+.......+|.|.++. .+|
T Consensus 1 GPP~i~~~~~~~-~v~~G~~v~l~C~v~--g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D 77 (101)
T d3b5ha1 1 GPPRVKAVKSSE-HINEGETAMLVCKSE--SVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEAD 77 (101)
T ss_dssp CSCCCEESCSEE-EECTTSCEEEEEECC--CSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTS
T ss_pred CCceEEEcCCcE-EECcCCeEEEEEEEE--ecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccC
Confidence 378999888888 999999999999998 99887 7999997632 22 2356777888888999999998 579
Q ss_pred CEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 762 TGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 762 ~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
+|.|+|.|.|.+|.++..+.|.|.
T Consensus 78 ~G~Y~C~A~N~~G~~~~~~~L~Vr 101 (101)
T d3b5ha1 78 PGQYRCNGTSSKGSDQAIITLRVR 101 (101)
T ss_dssp SEEEEEEEEETTEEEEEEEEEEEC
T ss_pred CEEEEEEEEECCCEEEEEEEEEEC
Confidence 999999999999999999999883
|
| >d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.61 E-value=1.5e-15 Score=121.08 Aligned_cols=87 Identities=25% Similarity=0.405 Sum_probs=76.2
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEE
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAW 144 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 144 (805)
+|.|+..++..+.+.+|+.+.|.|.+. |.|.|.|+|+|||.++.. +++.+..+ .|.|.+++.+|+|.|+|.|.
T Consensus 2 aP~f~~~p~~~~~v~~G~~~~l~C~~~--g~P~p~v~W~~~~~~i~~-~~~~~~~~----~L~i~~v~~~d~G~Y~C~a~ 74 (89)
T d1biha4 2 APKYEQKPEKVIVVKQGQDVTIPCKVT--GLPAPNVVWSHNAKPLSG-GRATVTDS----GLVIKGVKNGDKGYYGCRAT 74 (89)
T ss_dssp EEEEEECCCSEEEECTTSCEEEECEEE--EESCCCCEEEETTEECCS-SSEEEETT----EEEESSCCSTTCEEEEEEEE
T ss_pred CCeEEECCCCCEEEeCCCeEEEEEEEE--EeCCCEEEEEeCCccCcc-ccEEEeee----eEEECCCChhhCEEEEEEEE
Confidence 588888877677899999999999998 688899999999999964 46665543 69999999999999999999
Q ss_pred eCCeeEEEEEEEEE
Q psy2166 145 NLAGETFTSTTIYC 158 (805)
Q Consensus 145 n~~g~~~~~~~l~V 158 (805)
|..|.....+.|.|
T Consensus 75 N~~G~~~~~~~l~V 88 (89)
T d1biha4 75 NEHGDKYFETLVQV 88 (89)
T ss_dssp ETTEEEEEEEEEEE
T ss_pred ECCCEEEEEEEEEE
Confidence 99999988888876
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.4e-15 Score=132.38 Aligned_cols=93 Identities=19% Similarity=0.332 Sum_probs=78.2
Q ss_pred CCCeeee-----cCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccC---------------------------
Q psy2166 690 RPPQFTS-----EFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEA--------------------------- 737 (805)
Q Consensus 690 ~~P~~~~-----~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~--------------------------- 737 (805)
.||+|.. .+.++ .|.+|+.++|.|.+. |.|.|.|.|+|++..+..
T Consensus 3 ~PP~i~~~~~~~~~~~v-~v~~G~~v~L~C~v~--G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (130)
T d1gxea_ 3 EPPKIHLDCPGRIPDTI-VVVAGNKLRLDVPIS--GDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLC 79 (130)
T ss_dssp BCCCSCCSSSCCCCCEE-EESSSSCCCCEEECC--SBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCC
T ss_pred CCCEEECCCCCCCCCCE-EEEcCCeEEEEEEEE--EecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceee
Confidence 5676643 34455 899999999999998 999999999997655432
Q ss_pred --CCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 738 --SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 738 --~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
..++.+....+.+.|.|.+++.+|+|.|+|.|.|.+|.++.+++|.|.
T Consensus 80 ~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 129 (130)
T d1gxea_ 80 ETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 129 (130)
T ss_dssp SCSSSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred ccCceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence 335667777788899999999999999999999999999999999985
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=4.5e-15 Score=118.00 Aligned_cols=88 Identities=15% Similarity=0.175 Sum_probs=70.5
Q ss_pred CeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEc
Q psy2166 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 771 (805)
Q Consensus 692 P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N 771 (805)
|.+...+.+.+.+.+|+++.|.|.+. .|.|.|.|+|++++.++.. .....+..+|+|.+++.+|+|.|+|+|.|
T Consensus 3 P~~i~~p~~~~~~~~G~~~~l~C~~~-~g~p~p~v~W~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn 76 (90)
T d1gsma1 3 PLQVEPPEPVVAVALGASRQLTCRLA-CADRGASVQWRGLDTSLGA-----VQSDTGRSVLTVRNASLSAAGTRVCVGSC 76 (90)
T ss_dssp SEEEESCCSEEEEETTCCEEEEEEEC-CSSTTCEEEEESSTTTTCC-----EEEESSEEEEEECSCCGGGCEEEEEEEEE
T ss_pred CcEEeCCCCeEEEEeCCcEEEEEEec-CCCCccEEEEEEeeeeeee-----eeccCceeeEEcCccChhhCCcEEEEEEe
Confidence 33333444433889999999999884 3789999999998876532 23445667899999999999999999999
Q ss_pred CCccEEEEEEEEEE
Q psy2166 772 KWGQAEISVNLECV 785 (805)
Q Consensus 772 ~~G~~~~~~~l~V~ 785 (805)
..|..+.+++|.|.
T Consensus 77 ~~g~~~~s~~l~Vy 90 (90)
T d1gsma1 77 GGRTFQHTVQLLVY 90 (90)
T ss_dssp TTEEEEEEEEEEEE
T ss_pred CCCcEEEEEEEEEC
Confidence 99999999999884
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=2.7e-15 Score=117.86 Aligned_cols=82 Identities=17% Similarity=0.225 Sum_probs=66.9
Q ss_pred CeeeecCCcccccCCCCeEEEEEEEeecCCCCe-EEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEE
Q psy2166 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 770 (805)
Q Consensus 692 P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 770 (805)
|.|...|.+. .+.+|+++.|.|.+. |.|.| .|+|+|||..+..... + .+.|..+..+|+|.|+|.|.
T Consensus 2 P~f~~~P~~~-~v~~G~~~~l~C~~~--g~P~P~~i~W~k~g~~i~~~~~-------~--~~~l~~~~~~d~G~Y~C~A~ 69 (85)
T d1rhfa2 2 PFFTVEPKDL-AVPPNAPFQLSCEAV--GPPEPVTIVWWRGTTKIGGPAP-------S--PSVLNVTGVTQSTMFSCEAH 69 (85)
T ss_dssp CEEEECCCCE-EECTTCCEEEEEEEE--CSSSCCEEEEEETTEECSCSEE-------S--SEEEEECCCSSCEEEEEEEE
T ss_pred CcEEEeCCcE-EEcCCCEEEEEEEEe--cCCcceEEEEEECCEECCCCCC-------c--ceEEecCCccccEEEEEEEE
Confidence 7889999998 999999999999999 99987 8999999999876521 2 13344455679999999999
Q ss_pred cCCccEE-EEEEEEEE
Q psy2166 771 NKWGQAE-ISVNLECV 785 (805)
Q Consensus 771 N~~G~~~-~~~~l~V~ 785 (805)
|.+|... ..++|.|+
T Consensus 70 N~~G~~~S~~~~v~Vk 85 (85)
T d1rhfa2 70 NLKGLASSRTATVHLQ 85 (85)
T ss_dssp ETTEEEECCCEEEEEC
T ss_pred cCCCcEEEEEEEEEEC
Confidence 9999654 46777763
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.57 E-value=4.3e-15 Score=118.96 Aligned_cols=82 Identities=17% Similarity=0.222 Sum_probs=69.2
Q ss_pred cCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccE
Q psy2166 697 EFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 776 (805)
Q Consensus 697 ~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 776 (805)
.+.+. .+.+|+++.|.|.+. .|.|.|.|+|+|+|..+..+.. ....+ +|.|.++..+|+|.|+|.|.|.+|.+
T Consensus 8 ~p~~~-~v~~G~~~~l~C~~~-~~~p~~~v~W~k~~~~~~~~~~---~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~ 80 (89)
T d1gl4b_ 8 EQRSQ-SVRPGADVTFICTAK-SKSPAYTLVWTRLHNGKLPSRA---MDFNG--ILTIRNVQPSDAGTYVCTGSNMFAMD 80 (89)
T ss_dssp SCCEE-EECTTCCEEEEEEEE-ESSSCCEEEEEEGGGBCCCTTE---EEETT--EEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred CCCeE-EEeCCCcEEEEEEcc-CCCCCCEEEEecCCceeecccc---Eeece--EEEEecCCcccCEEEEEEEEECCCEE
Confidence 45556 899999999999997 2678899999999988766543 22344 69999999999999999999999999
Q ss_pred EEEEEEEEE
Q psy2166 777 EISVNLECV 785 (805)
Q Consensus 777 ~~~~~l~V~ 785 (805)
+.+++|.|+
T Consensus 81 ~~~~~l~V~ 89 (89)
T d1gl4b_ 81 QGTATLHVQ 89 (89)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEEC
Confidence 999999884
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Probab=99.57 E-value=4.3e-15 Score=124.44 Aligned_cols=93 Identities=19% Similarity=0.233 Sum_probs=72.4
Q ss_pred CCCeeeec-CCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccC----CCC--eE-------EEeeCcEEEEEEc
Q psy2166 690 RPPQFTSE-FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEA----SHR--IR-------TVHAFGMVVLEIL 755 (805)
Q Consensus 690 ~~P~~~~~-~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~----~~~--~~-------~~~~~~~~~L~i~ 755 (805)
.+|.|... |.+. ++.+|+++.|.|.+. |.|.|.|.|+|++..... ... .. ...+.....|.|.
T Consensus 3 ~~P~i~~~~P~~~-tv~~G~~v~l~C~v~--g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~ 79 (109)
T d2fdbp2 3 HRPILQAGLPANA-STVVGGDVEFVCKVY--SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIR 79 (109)
T ss_dssp SCCEECTTCSCCE-EECTTCCEEEEEEEE--CSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEEC
T ss_pred CCCEEcCCCCCCE-EEecCCcEEEEEEEE--EcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEEC
Confidence 57888775 6788 999999999999999 999999999997643221 111 11 1122234689999
Q ss_pred CCCCCCCEEEEEEEEcCCccEEEEEEEEEE
Q psy2166 756 GTKIEDTGVYTCRATNKWGQAEISVNLECV 785 (805)
Q Consensus 756 ~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 785 (805)
++..+|+|.|+|.|.|.+|.+..++.|+|.
T Consensus 80 ~~~~~D~G~Y~C~a~N~~G~~~~~~~L~Vl 109 (109)
T d2fdbp2 80 NVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109 (109)
T ss_dssp SCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred CCCHHHCeEEEEEEEECCCEEEEEEEEEEC
Confidence 999999999999999999999999999983
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=6.1e-15 Score=118.00 Aligned_cols=78 Identities=13% Similarity=0.086 Sum_probs=68.1
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 782 (805)
.+.+|+.+.|.|.+. |.|.|.++|++++..+.... ........+|.|.++..+|+|.|+|+|.|..|..+.+++|
T Consensus 12 ~~~~G~~v~l~C~~~--g~p~p~i~W~~~~~~~~~~~---~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v 86 (90)
T d1vcaa2 12 LAQIGDSVSLTCSTT--GCESPFFSWRTQIDSPLNGK---VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQV 86 (90)
T ss_dssp EEETTSCEEEEEEEE--SCSSCEEEEEETTCCCCSSE---EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEE
T ss_pred EEECCCEEEEEEecc--CCCCceEEEEecCccceeee---eeeecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEE
Confidence 678999999999999 99999999999887665432 2344566789999999999999999999999999999999
Q ss_pred EEE
Q psy2166 783 ECV 785 (805)
Q Consensus 783 ~V~ 785 (805)
.|.
T Consensus 87 ~V~ 89 (90)
T d1vcaa2 87 EIY 89 (90)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=3e-15 Score=120.42 Aligned_cols=85 Identities=15% Similarity=0.221 Sum_probs=72.7
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeC--cEEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF--GMVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
|.++ ++.+|+++.|.|.+. |.|.|.|.|+|||..+....+..+.... ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 3 P~~~-~v~~G~~~~l~C~v~--g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 79 (91)
T d1rhfa1 3 PVKL-TVSQGQPVKLNCSVE--GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGET 79 (91)
T ss_dssp CEEE-EEETTCCEEEEEEEE--SCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTC
T ss_pred CeeE-EEcCCCeEEEEEEEE--ecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCC
Confidence 4455 899999999999998 9999999999999999888776554433 3467999999999999999999999997
Q ss_pred E-EEEEEEEEE
Q psy2166 776 A-EISVNLECV 785 (805)
Q Consensus 776 ~-~~~~~l~V~ 785 (805)
. +..+.|+|+
T Consensus 80 ~~S~~~~l~V~ 90 (91)
T d1rhfa1 80 EISQPVWLTVE 90 (91)
T ss_dssp EECCCEEEEEE
T ss_pred EEEEEEEEEEE
Confidence 5 567888885
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.57 E-value=3e-15 Score=121.72 Aligned_cols=85 Identities=22% Similarity=0.271 Sum_probs=70.6
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEE--EeeCcEEEEEEcCCCCCCCEEEEEEEEcCCcc
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT--VHAFGMVVLEILGTKIEDTGVYTCRATNKWGQ 775 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~--~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 775 (805)
+.+. .+.+|+++.|.|.+. |.|.|.|.|+|+|+.+.......+ .......+|.|.+++.+|+|.|+|.|.|.+|.
T Consensus 10 ~~~~-~~~~G~~v~l~C~~~--g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~ 86 (97)
T d1biha3 10 SKDM-MAKAGDVTMIYCMYG--SNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGK 86 (97)
T ss_dssp CCSE-EEETTSCEEEEEEEE--CSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSS
T ss_pred CCCE-EEecCCeEEEEEEEE--EecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCc
Confidence 4566 899999999999998 999999999999999876654433 22333457999999999999999999999997
Q ss_pred EE-EEEEEEEE
Q psy2166 776 AE-ISVNLECV 785 (805)
Q Consensus 776 ~~-~~~~l~V~ 785 (805)
.. .+++|+|.
T Consensus 87 ~~s~s~~L~Vl 97 (97)
T d1biha3 87 PQKHSLKLTVV 97 (97)
T ss_dssp CEEEEEEEEEE
T ss_pred EEEEEEEEEEC
Confidence 64 57888884
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=7e-15 Score=120.73 Aligned_cols=93 Identities=19% Similarity=0.234 Sum_probs=75.3
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEee-----CcEEEEEEcCCCCCCCEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA-----FGMVVLEILGTKIEDTGV 764 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G~ 764 (805)
.||.|+... ....++...|.|.+. |+|.|.|+|+|||+.|..+.+..+... .....|.|.+++.+|+|.
T Consensus 3 ~pP~it~~~----~~~~~~~~~i~~~v~--G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~ 76 (103)
T d1wwbx_ 3 FAPTITFLE----SPTSDHHWCIPFTVK--GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGD 76 (103)
T ss_dssp CCCCCCCCC----CCCCCCEEEEEEEEE--CSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred cCCeeEEcC----CCccceeEEEEEEEE--EeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCce
Confidence 467665322 234678889999998 999999999999999998877654322 224579999999999999
Q ss_pred EEEEEEcCCccEEEEEEEEEEEeC
Q psy2166 765 YTCRATNKWGQAEISVNLECVVWS 788 (805)
Q Consensus 765 Y~C~a~N~~G~~~~~~~l~V~~~~ 788 (805)
|+|.|+|.+|+++.+++|.|...|
T Consensus 77 Y~C~a~N~~G~~~~~~~v~V~~~P 100 (103)
T d1wwbx_ 77 YTLIAKNEYGKDEKQISAHFMGWP 100 (103)
T ss_dssp EEEEEECSSCEEEEEEEECCSCCC
T ss_pred EEEEEeccCCEEEEEEEEEEEeCC
Confidence 999999999999999999986543
|
| >d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Titin species: Human (Homo sapiens), different modules [TaxId: 9606]
Probab=99.56 E-value=1.7e-15 Score=121.64 Aligned_cols=86 Identities=17% Similarity=0.285 Sum_probs=78.7
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEE
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETF 151 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~ 151 (805)
.|.++.+.+|++++|.|.+. |.|.|.|.|++||..+..+.++.+.......+|.|.+++.+|+|.|+|.|.|..|...
T Consensus 5 ~P~~~~v~~G~~~~l~C~~~--g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~ 82 (91)
T d1tnna_ 5 KPRSMTVYEGESARFSCDTD--GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQE 82 (91)
T ss_dssp CCCCEECSSSSCCCEEEECC--CSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCC
T ss_pred CCcCEEEeCCCcEEEEEEEE--EEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEE
Confidence 34478999999999999998 7899999999999999999999988888888999999999999999999999999988
Q ss_pred EEEEEEEe
Q psy2166 152 TSTTIYCS 159 (805)
Q Consensus 152 ~~~~l~V~ 159 (805)
..+.|.|+
T Consensus 83 ~~~~l~V~ 90 (91)
T d1tnna_ 83 AEFTLTIQ 90 (91)
T ss_dssp EEEEEECC
T ss_pred EEEEEEEE
Confidence 88888774
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=2.6e-16 Score=126.81 Aligned_cols=89 Identities=16% Similarity=0.205 Sum_probs=77.3
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCE-EEEEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTG-VYTCRA 769 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a 769 (805)
.|.|...+.+. .+.+|+.+.|.|.+. |.|.|.|+|+++|..+...... ........|.|.+++.+|.| .|+|.|
T Consensus 2 ~P~i~~~~~~~-~v~~G~~v~l~C~~~--g~P~p~v~W~~~~~~~~~~~~~--~~~~~~~~L~i~~~~~~d~G~~Y~C~a 76 (92)
T d2ifga1 2 VPTLKVQVPNA-SVDVGDDVLLRCQVE--GRGLEQAGWILTELEQSATVMK--SGGLPSLGLTLANVTSDLNRKNVTCWA 76 (92)
T ss_dssp CCEEEEECCSS-CCBTTCCEEEEEEEE--CSSCCCCCEEESCCCSSEEECC--CCCSSEEEEEEESCCSTTTTCCEEECC
T ss_pred CCEEEEeCCCE-EEeCCCEEEEeeecc--CCCCcEEEEEECCceeeeeeee--eeeccceeEEEccccccccceEEEEEE
Confidence 58888889998 999999999999999 9999999999999877654332 23445668999999999999 699999
Q ss_pred EcCCccEEEEEEEEE
Q psy2166 770 TNKWGQAEISVNLEC 784 (805)
Q Consensus 770 ~N~~G~~~~~~~l~V 784 (805)
+|.+|.++.++.|.|
T Consensus 77 ~N~~G~~~~s~~l~V 91 (92)
T d2ifga1 77 ENDVGRAEVSVQVNV 91 (92)
T ss_dssp EETTEECCEEECCCC
T ss_pred EcCCCEEEEEEEEEE
Confidence 999999999998876
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=4.2e-15 Score=116.95 Aligned_cols=73 Identities=12% Similarity=0.204 Sum_probs=64.0
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 782 (805)
.+.+|++++|.|.+. |.|.|.|+|++++..+.. +.. .|+|.++..+|+|.|+|.|.|..|..+..+.|
T Consensus 10 ~v~~G~~~~L~C~~~--g~p~P~i~W~~~~~~~~~--------~~~--~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v 77 (84)
T d2nxyb2 10 HLLQGQSLTLTLESP--PGSSPSVQCRSPRGKNIQ--------GGK--TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 77 (84)
T ss_dssp CEETTCCEEEEEECC--TTCCCEEEEECTTCCEEE--------ESS--EEEESSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEECCCeEEEEEEeE--cCCchheEEEeeccccee--------eee--eeeeeecccccccEEEEEEEeCCCEEEEEEEE
Confidence 789999999999998 999999999997754432 233 69999999999999999999999999999999
Q ss_pred EEEEe
Q psy2166 783 ECVVW 787 (805)
Q Consensus 783 ~V~~~ 787 (805)
.|+..
T Consensus 78 ~V~~~ 82 (84)
T d2nxyb2 78 VVLAF 82 (84)
T ss_dssp CEECC
T ss_pred EEEec
Confidence 98753
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=5.7e-15 Score=119.03 Aligned_cols=89 Identities=19% Similarity=0.275 Sum_probs=76.0
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCC-CCeEEEeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS-HRIRTVHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
.+|.|...+.+.+.|.+|+.+.|.|.+. + |.|.|+|+|||+.+..+ .++.+..+++.+.|.|.++..+|+|.|+|.
T Consensus 4 ~~~~f~~~l~~~~~v~~G~~v~l~c~v~--~-p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~ 80 (94)
T d1pd6a_ 4 KSTAFQKKLEPAYQVSKGHKIRLTVELA--D-HDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCV 80 (94)
T ss_dssp TTSSCSEECCSEEEEETTSCEEEEEECS--S-SSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEE
T ss_pred CCCcEEEeCCCCEEECcCCeEEEEEEEC--C-CCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEE
Confidence 5778888776654799999999999984 4 88999999999998765 567888888899999999999999999999
Q ss_pred EEcCCccEEEEEEEEEE
Q psy2166 769 ATNKWGQAEISVNLECV 785 (805)
Q Consensus 769 a~N~~G~~~~~~~l~V~ 785 (805)
|.| ...+++|.|+
T Consensus 81 a~n----~~~s~~l~V~ 93 (94)
T d1pd6a_ 81 VGG----EKCSTELFVK 93 (94)
T ss_dssp ETT----EEECCEEEEE
T ss_pred Eee----EEEEEEEEEE
Confidence 966 5677788875
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=3.4e-16 Score=122.25 Aligned_cols=73 Identities=15% Similarity=0.158 Sum_probs=63.4
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEE
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE 777 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~ 777 (805)
+.+. ++.+|+.+.|.|.+. |+|.|.|+|+|||..+.+... |.+++++|+|.|+|+|.|.+|+.+
T Consensus 11 p~~~-~~~~G~~~~l~C~a~--G~P~P~v~W~k~g~~~~~~~~-------------~~~v~~~d~G~Y~C~A~N~~G~~~ 74 (84)
T d2oz4a3 11 PGNW-TWPENSQQTPMCQAW--GNPLPELKCLKDGTFPLPIGE-------------SVTVTRDLEGTYLCRARSTQGEVT 74 (84)
T ss_dssp CSEE-EEETTCEECCCCCCE--EESCCEEEEEETTTEECCTTS-------------CEECCGGGCEEEEEEEEETTEEEE
T ss_pred CccE-EEeCCCEEEEEEEEe--EcCccEEEEEEeeccceeeee-------------eeccccCCCCEEEEEEEcCCCEEE
Confidence 4566 899999999999999 999999999999987765433 346788999999999999999999
Q ss_pred EEEEEEEEE
Q psy2166 778 ISVNLECVV 786 (805)
Q Consensus 778 ~~~~l~V~~ 786 (805)
..+.|+|..
T Consensus 75 ~~~~l~V~~ 83 (84)
T d2oz4a3 75 REVTVNVLS 83 (84)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEEEC
Confidence 999998864
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.1e-14 Score=118.61 Aligned_cols=92 Identities=23% Similarity=0.178 Sum_probs=72.8
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEe--eC--cEEEEEEcCCCCCCCEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVH--AF--GMVVLEILGTKIEDTGVY 765 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~--~~--~~~~L~i~~v~~~d~G~Y 765 (805)
.||+|..... ...+....|.|.+. |+|.|.|+|+|||++|..+.++.+.. +. ....|.|.++..+|+|.|
T Consensus 4 ~PP~i~~~~~----~~~~~~~~i~~~v~--G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y 77 (105)
T d1wwca_ 4 YPPRVVSLEE----PELRLEHCIEFVVR--GNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNY 77 (105)
T ss_dssp CCCCCCCCCC----CCCCCEEEEEEEEE--CSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEE
T ss_pred cCCeeEEeCC----CEEEEEEEEEEEEE--EeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEE
Confidence 5676654222 23445567888998 99999999999999999887765432 22 246799999999999999
Q ss_pred EEEEEcCCccEEEEEEEEEEEe
Q psy2166 766 TCRATNKWGQAEISVNLECVVW 787 (805)
Q Consensus 766 ~C~a~N~~G~~~~~~~l~V~~~ 787 (805)
+|.|+|.+|.++.++.|+|...
T Consensus 78 ~C~a~N~~G~~~~~~~v~V~~~ 99 (105)
T d1wwca_ 78 TLIAKNPLGTANQTINGHFLKE 99 (105)
T ss_dssp EEEEEETTEEEEEEEEECCSCC
T ss_pred EEEEEcCCCEEEEEEEEEEEeC
Confidence 9999999999999999998653
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.54 E-value=2.3e-14 Score=119.78 Aligned_cols=94 Identities=17% Similarity=0.129 Sum_probs=75.9
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCC---CeEEEEEECCEEcc-CC--CCeEEEee------CcEEEEEEcCC
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ---TMTVEFLYNGKPIE-AS--HRIRTVHA------FGMVVLEILGT 757 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p---~~~v~W~~~g~~l~-~~--~~~~~~~~------~~~~~L~i~~v 757 (805)
..|.|...|.+. ++.+|++++|.|.+. |.| .|.|.|+|++.... .. .++..... .+.+.|.|.++
T Consensus 3 p~~~Fv~~P~~~-~v~~G~~v~l~C~v~--g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v 79 (110)
T d2avga1 3 PIGLFVMRPQDG-EVTVGGSITFSARVA--GASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDA 79 (110)
T ss_dssp TTCSEEECCCCE-EEETTSEEEEEEEEE--CCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESC
T ss_pred CCCEeEECCCeE-EEECCCCEEEEEeec--CCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEecc
Confidence 356888889998 999999999999999 888 58899999885432 22 22322211 13467999999
Q ss_pred CCCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 758 KIEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 758 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
+.+|+|.|+|.|+|..|.++.++.|+|..
T Consensus 80 ~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~ 108 (110)
T d2avga1 80 QPAFTGGYRCEVSTKDKFDCSNFNLTVHE 108 (110)
T ss_dssp CTTCCEEEEEEEEETTEEEEEEEEEEEES
T ss_pred CHHHCcEEEEEEEECCCeEEEEEEEEEEe
Confidence 99999999999999999999999999963
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.53 E-value=3.9e-15 Score=121.21 Aligned_cols=90 Identities=23% Similarity=0.293 Sum_probs=74.4
Q ss_pred CCCeeeecCCcccccCCC---CeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEG---EIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYT 766 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G---~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 766 (805)
.+|.|...|.+. .+.+| +++.|.|.+. |.|.|.++|+|||+.+..+....+....+ ..|.|..+..+|+|.|+
T Consensus 3 ~~P~f~~~P~~~-~~~~g~~~~~v~l~C~~~--g~P~p~v~W~~ng~~i~~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~ 78 (97)
T d1cs6a1 3 YGPVFEEQPAHT-LFPEGSAEEKVTLTCRAR--ANPPATYRWKMNGTELKMGPDSRYRLVAG-DLVISNPVKAKDAGSYQ 78 (97)
T ss_dssp EEEEEEECCCCE-EEETTCSCCEEEECCEEE--EESCCEEEEEETTEECCCSTTSSEEEETT-EEEEESCCHHHHCEEEE
T ss_pred cCCEEEEeCCCE-EEECccCCCeEEEEEEEE--EeCCCEEEEEEeeeeccCCCCceEEeeee-eEEEEecccccCCEEEE
Confidence 478999999887 66555 7999999999 99999999999999998776555555544 37889999999999999
Q ss_pred EEEEcCCccEE-EEEEEE
Q psy2166 767 CRATNKWGQAE-ISVNLE 783 (805)
Q Consensus 767 C~a~N~~G~~~-~~~~l~ 783 (805)
|.|.|.+|... .+++|.
T Consensus 79 C~a~N~~G~~~S~~a~L~ 96 (97)
T d1cs6a1 79 CVATNARGTVVSREASLR 96 (97)
T ss_dssp EEEEETTEEEECCCEEEE
T ss_pred EEEEECCCEEEEEEEEEe
Confidence 99999999864 356653
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.53 E-value=8.5e-15 Score=118.87 Aligned_cols=90 Identities=18% Similarity=0.295 Sum_probs=75.5
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
.+|.|. +.+. .+.+|+.++|.|.+. + |++.+.|+|+|+.+..+.+..+..+.+ +|.|.+++.+|+|.|+|.|
T Consensus 4 ~~P~i~--~~~~-~v~~g~~v~l~C~~~--~-~~~~v~W~~~~~~l~~~~~~~~~~~~~--~L~I~~v~~~d~G~Y~C~a 75 (96)
T d1l6za2 4 TQPFLQ--VTNT-TVKELDSVTLTCLSN--D-IGANIQWLFNSQSLQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEI 75 (96)
T ss_dssp CCCCEE--CSCS-EECTTSCEEEEECCC--C-SSCEEEEEETTEECCCCTTEEEETTTT--EEEECSCCGGGCEEEEEEE
T ss_pred CCCeEE--cCce-EEeCCCeEEEEEccC--C-CCCCEEEEEeeeecccccceeccCCce--EEEEeccchhhceEEEEEE
Confidence 356664 4556 899999999999985 5 668999999999999999988766665 7999999999999999999
Q ss_pred EcCCccEE-EEEEEEEEEe
Q psy2166 770 TNKWGQAE-ISVNLECVVW 787 (805)
Q Consensus 770 ~N~~G~~~-~~~~l~V~~~ 787 (805)
.|.+|... ..++|+|...
T Consensus 76 ~N~~g~~~S~~~~L~V~~~ 94 (96)
T d1l6za2 76 SNPVSVRRSNSIKLDIIFD 94 (96)
T ss_dssp ESSSCCEECCCCEEEECCS
T ss_pred EeCCCCeEEEeEEEEEEcC
Confidence 99999775 4688888653
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.53 E-value=4.6e-15 Score=120.09 Aligned_cols=83 Identities=18% Similarity=0.228 Sum_probs=69.8
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCe-EEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
.|.|...|.+. .+.+|+.+.|.|.+. |.|.| .|.|++||+.+..+........ ...+|.|.++..+|+|.|+|.|
T Consensus 2 ~P~i~~~p~~~-~v~~g~~~~l~C~~~--g~p~p~~v~W~~~g~~l~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a 77 (94)
T d1biha1 2 YPVLKDQPAEV-LFRENNPTVLECIIE--GNDQGVKYSWKKDGKSYNWQEHNAALRK-DEGSLVFLRPQASDEGHYQCFA 77 (94)
T ss_dssp CCEECCCCSEE-EEETTSCEEECCCEE--SCCSSCEEEEEESSSBCCTTTTTEEECT-TSCCEEESSCCGGGCEEEEEEE
T ss_pred CCEEEecCCcE-EEeCCCeEEEEEEec--CCCCeeEEEEEeeeeeeeeecceeeecc-cceEEEEeccChhcCeEEEEEE
Confidence 58899999888 999999999999999 88866 7999999999976654433322 2237999999999999999999
Q ss_pred EcCCccEE
Q psy2166 770 TNKWGQAE 777 (805)
Q Consensus 770 ~N~~G~~~ 777 (805)
.|.+|...
T Consensus 78 ~N~~G~~~ 85 (94)
T d1biha1 78 ETPAGVAS 85 (94)
T ss_dssp EETTEEEE
T ss_pred EeCCCEEE
Confidence 99999754
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=3.4e-15 Score=125.70 Aligned_cols=96 Identities=19% Similarity=0.152 Sum_probs=74.7
Q ss_pred eeecCCcccccCCCCeEEEEEEEeecCCC---CeEEEEEECCEEcc---CCCCeEEEe--e----CcEEEEEEcCCCCCC
Q psy2166 694 FTSEFQHLSNLSEGEIAHFEASLIPVGDQ---TMTVEFLYNGKPIE---ASHRIRTVH--A----FGMVVLEILGTKIED 761 (805)
Q Consensus 694 ~~~~~~~~~~v~~G~~~~l~C~~~~~g~p---~~~v~W~~~g~~l~---~~~~~~~~~--~----~~~~~L~i~~v~~~d 761 (805)
|...|.+. ++.+|+.++|.|.+. |.| .|.|.|+|++.... ...++.+.. + .+.+.|.|.++..+|
T Consensus 3 F~~~P~~~-~v~~G~~v~l~C~v~--g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 79 (113)
T d2dava1 3 FIEKPQGG-TVKVGEDITFIAKVK--AEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNF 79 (113)
T ss_dssp CCSCCCCC-EEETTCCEEEEEEEE--CCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTS
T ss_pred EeECCceE-EEeCCCEEEEEEEEc--cCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHH
Confidence 45567777 999999999999999 988 58999999874322 223332211 1 224679999999999
Q ss_pred CEEEEEEEEcCCccEEEEEEEEEEEeCCCcc
Q psy2166 762 TGVYTCRATNKWGQAEISVNLECVVWSPSQT 792 (805)
Q Consensus 762 ~G~Y~C~a~N~~G~~~~~~~l~V~~~~~~~~ 792 (805)
+|.|+|.|.|.+|..+.++.|.|...++..+
T Consensus 80 ~G~Y~C~a~N~~G~~~~~~~L~V~~~~~~~p 110 (113)
T d2dava1 80 AGNYRCEVTYKDKFDSCSFDLEVHESTGTTP 110 (113)
T ss_dssp CEEEEEEEECSSCEEEECCEEEEECCCCSCC
T ss_pred CeEEEEEEEeCCCEEEEEEEEEEEcCCCcCC
Confidence 9999999999999999999999976655543
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=1.3e-14 Score=115.96 Aligned_cols=85 Identities=20% Similarity=0.263 Sum_probs=72.4
Q ss_pred eeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCC--eEEEeeCcEEEEEEcCCCCCCCEEEEEEEEc
Q psy2166 694 FTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR--IRTVHAFGMVVLEILGTKIEDTGVYTCRATN 771 (805)
Q Consensus 694 ~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N 771 (805)
|..++.+. .+.+|+++.|.|.+ +.|.+.+.|+|+|+++..+.+ +.+..+++.+.|.|.++..+|+|.|+|.|.|
T Consensus 3 i~~~l~~~-~v~~G~~v~l~C~v---~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 78 (90)
T d1x44a1 3 VTKQLEDT-TAYCGERVELECEV---SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG 78 (90)
T ss_dssp CSBCCCCE-EEETTEEEEEEEEC---SSSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT
T ss_pred EEcCCCCE-EEeCCCcEEEEEEE---CCCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec
Confidence 34456777 99999999999998 458889999999999887654 6778888899999999999999999999976
Q ss_pred CCccEEEEEEEEEEE
Q psy2166 772 KWGQAEISVNLECVV 786 (805)
Q Consensus 772 ~~G~~~~~~~l~V~~ 786 (805)
...+++|+|+.
T Consensus 79 ----~~~~a~l~V~~ 89 (90)
T d1x44a1 79 ----GQSSAKLSVDL 89 (90)
T ss_dssp ----EEEEEEEEEEC
T ss_pred ----ceEEEEEEEEE
Confidence 57788888863
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=8.5e-15 Score=118.96 Aligned_cols=91 Identities=19% Similarity=0.282 Sum_probs=69.2
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEE---ECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFL---YNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTC 767 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~---~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 767 (805)
.|.|. .+.++ .+.+|++++|.|.+. |.|.|.+.|. +++..+.......+.......+|.|.++..+|+|.|+|
T Consensus 2 ~P~f~-~~~~~-~v~~G~~v~l~C~~~--g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 77 (96)
T d2c9aa1 2 TPHFL-RIQNV-EVNAGQFATFQCSAI--GRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRC 77 (96)
T ss_dssp SCEEC-CCCCE-EECSSSCEEEEEEEE--SCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEE
T ss_pred cCeec-ccCCE-EEeCCCEEEEEEEEe--ecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEE
Confidence 68887 58888 999999999999999 9887765543 33444433333333333445679999999999999999
Q ss_pred EEEcCCccEEEE-EEEEEE
Q psy2166 768 RATNKWGQAEIS-VNLECV 785 (805)
Q Consensus 768 ~a~N~~G~~~~~-~~l~V~ 785 (805)
.|.|..|...++ ++|.|+
T Consensus 78 ~a~N~~G~~~s~~a~L~Vk 96 (96)
T d2c9aa1 78 MIRTEGGVGISNYAELVVK 96 (96)
T ss_dssp EEEETTEEEEEEEEEEEEC
T ss_pred EEEeCCCeEEEEEEEEEEC
Confidence 999999986544 799884
|
| >d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.52 E-value=9.5e-15 Score=117.06 Aligned_cols=90 Identities=21% Similarity=0.241 Sum_probs=73.3
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEE
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECR 572 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 572 (805)
+++|.|....+....+.+|++++|.|.+. |.|.|.|+|+|++..+.... ..+++ .|.|.+++.+|+|.|+|.
T Consensus 2 ~~~P~i~~~~p~~~~~~~G~~v~l~C~~~--g~P~p~i~W~k~~~~~~~~~----~~~~~--~L~I~~v~~~D~G~Y~C~ 73 (91)
T d1cs6a3 2 QYAPSIKAKFPADTYALTGQMVTLECFAF--GNPVPQIKWRKLDGSQTSKW----LSSEP--LLHIQNVDFEDEGTYECE 73 (91)
T ss_dssp CEEEEEEECCCSEEEEETTCCEEEECEEE--EESCCEEEEEECCSCCSCCC----SBSSS--EEEECSCCGGGCEEEEEE
T ss_pred ccCCeEEeeCCCcEEEecCCcEEEEEEEE--EccCCEEEEEecccccceEe----eeeee--EEEeCCCCccCCEEEEEE
Confidence 46788888766666699999999999999 67889999999775443221 11222 599999999999999999
Q ss_pred EEcCCcceEEEEEEEEee
Q psy2166 573 ATNKYGSDVTKASLKCVS 590 (805)
Q Consensus 573 a~n~~g~~~~~~~l~V~~ 590 (805)
|.|..|..+..+.|.|.+
T Consensus 74 a~N~~G~~~~~~~l~V~A 91 (91)
T d1cs6a3 74 AENIKGRDTYQGRIIIHA 91 (91)
T ss_dssp EEETTEEEEEEEEEEEEE
T ss_pred EEECCCEEEEEEEEEEEC
Confidence 999999999999998864
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=2.3e-14 Score=118.47 Aligned_cols=84 Identities=23% Similarity=0.211 Sum_probs=68.8
Q ss_pred ccCCCCeEEEE---EEEeecCCCCeEEEEEECCEEccCCCCeEEEeeC-------cEEEEEEcCCCCCCCEEEEEEEEcC
Q psy2166 703 NLSEGEIAHFE---ASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAF-------GMVVLEILGTKIEDTGVYTCRATNK 772 (805)
Q Consensus 703 ~v~~G~~~~l~---C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~N~ 772 (805)
.+..|....+. |.+. |+|.|.|+|+|||++|..+.+..+.... ....|.|.++..+|+|.|+|.|.|.
T Consensus 8 ~~~~g~~~~~~ci~~~v~--G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~ 85 (107)
T d1he7a_ 8 QLHTAVEMHHWCIPFSVD--GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 85 (107)
T ss_dssp CCCCCCCCCEEEEEEEEC--CSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEET
T ss_pred EECCCeEEEEEEEEEEEE--EecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeC
Confidence 56666665654 5787 9999999999999999988776543222 2467999999999999999999999
Q ss_pred CccEEEEEEEEEEEeC
Q psy2166 773 WGQAEISVNLECVVWS 788 (805)
Q Consensus 773 ~G~~~~~~~l~V~~~~ 788 (805)
+|.++.++.|.|...|
T Consensus 86 ~G~~~~~i~v~v~~~P 101 (107)
T d1he7a_ 86 FGQASASIMAAFMDNP 101 (107)
T ss_dssp TEEEEEEEEECCCSCT
T ss_pred CCEEEEEEEEEEEcCC
Confidence 9999999999997554
|
| >d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=2.4e-14 Score=117.26 Aligned_cols=94 Identities=20% Similarity=0.264 Sum_probs=74.0
Q ss_pred CCceEecCCCc-ccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc--eEEEeeCCEEEEEEccCCCCCCEEEEE
Q psy2166 495 APKFITQISDV-TQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR--YRTFHDFGIVILDILYCYEENSGVYEC 571 (805)
Q Consensus 495 ~P~~~~~~~~~-~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C 571 (805)
||.|....... ..+..|++++|.|.+. |.|.|.|+|++||+.+..... ...........|.|.+++.+|+|.|+|
T Consensus 3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~--g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 80 (100)
T d1qz1a3 3 PPTVQARQSIVNATANLGQSVTLVCDAD--GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVC 80 (100)
T ss_dssp EEEEEESCSEEEEETTSCCCEEEEEEEE--EESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEE
T ss_pred CCEEEeCCCceeEEEcCCCCEEEEEEEE--EecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEE
Confidence 66776554332 3378899999999999 678899999999999965432 122233344579999999999999999
Q ss_pred EEEcCCcceEEEEEEEEee
Q psy2166 572 RATNKYGSDVTKASLKCVS 590 (805)
Q Consensus 572 ~a~n~~g~~~~~~~l~V~~ 590 (805)
.|.|..|..+..+.|.|..
T Consensus 81 ~a~N~~G~~~~~~~l~V~~ 99 (100)
T d1qz1a3 81 IAENKAGEQDASIHLKVFA 99 (100)
T ss_dssp EEEETTEEEEEEEEEEEEC
T ss_pred EEEECCCEEEEEEEEEEEE
Confidence 9999999999999999875
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.50 E-value=1.1e-13 Score=112.49 Aligned_cols=87 Identities=25% Similarity=0.420 Sum_probs=68.6
Q ss_pred ecCCcccccCCCCeEEEEEEEeecCCCC-eEEEEEE-CCEEccC-CCCeEEE-eeCcEEEEEEcCCCCCCCEEEEEEEEc
Q psy2166 696 SEFQHLSNLSEGEIAHFEASLIPVGDQT-MTVEFLY-NGKPIEA-SHRIRTV-HAFGMVVLEILGTKIEDTGVYTCRATN 771 (805)
Q Consensus 696 ~~~~~~~~v~~G~~~~l~C~~~~~g~p~-~~v~W~~-~g~~l~~-~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N 771 (805)
..|.+. .+.+|+++.|.|.+. |.|+ +.|.|+| +|..+.. +.++.+. ...+..+|.|.+++.+|+|.|+|.|.|
T Consensus 5 i~P~~~-~v~~G~~~~l~C~v~--g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 81 (97)
T d1epfa1 5 IVPSQG-EISVGESKFFLCQVA--GDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTA 81 (97)
T ss_dssp EESSSE-EEETTCCEEEEEEEC--CCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred EECCCE-EEccCCcEEEEEEEE--eccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEe
Confidence 345565 899999999999998 8875 7999999 5665544 4566653 456678999999999999999999999
Q ss_pred CCccEE-EEEEEEEE
Q psy2166 772 KWGQAE-ISVNLECV 785 (805)
Q Consensus 772 ~~G~~~-~~~~l~V~ 785 (805)
..|... .++.|+|.
T Consensus 82 ~~G~~~~~tv~l~V~ 96 (97)
T d1epfa1 82 EDGTQSEATVNVKIF 96 (97)
T ss_dssp TTTEEEEEEEEEEEE
T ss_pred CCCcEEEEEEEEEEE
Confidence 999753 45666663
|
| >d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD4 C2-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=3.5e-14 Score=111.53 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=68.3
Q ss_pred EEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCC
Q psy2166 68 FIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLA 147 (805)
Q Consensus 68 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~ 147 (805)
|.+...++..|.+|+.++|.|.+. |.|.|.|+|++++..+..+.. +|.|.+++.+|+|.|+|.|.|..
T Consensus 1 F~it~~~~~~v~~G~~~~L~C~~~--g~p~P~i~W~~~~~~~~~~~~----------~l~i~~v~~~DsG~Y~C~a~N~~ 68 (84)
T d2nxyb2 1 FGLTANSDTHLLQGQSLTLTLESP--PGSSPSVQCRSPRGKNIQGGK----------TLSVSQLELQDSGTWTCTVLQNQ 68 (84)
T ss_dssp EEEEESCSSCEETTCCEEEEEECC--TTCCCEEEEECTTCCEEEESS----------EEEESSCCGGGCEEEEEEEEETT
T ss_pred CeEcCCCCeEEECCCeEEEEEEeE--cCCchheEEEeecccceeeee----------eeeeeecccccccEEEEEEEeCC
Confidence 344455567899999999999998 799999999998765432221 69999999999999999999999
Q ss_pred eeEEEEEEEEEecc
Q psy2166 148 GETFTSTTIYCSTK 161 (805)
Q Consensus 148 g~~~~~~~l~V~~~ 161 (805)
|.....+.|.|...
T Consensus 69 g~~~~~~~v~V~~~ 82 (84)
T d2nxyb2 69 KKVEFKIDIVVLAF 82 (84)
T ss_dssp EEEEEEEEECEECC
T ss_pred CEEEEEEEEEEEec
Confidence 99999999988754
|
| >d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=5e-14 Score=111.81 Aligned_cols=89 Identities=18% Similarity=0.168 Sum_probs=72.0
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRAT 574 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 574 (805)
+|.++..+.....+.+|+++.|.|.+.. |.|.+.|+|++++.++.. .........|.|.+++.+|+|.|+|.|+
T Consensus 2 kP~~i~~p~~~~~~~~G~~~~l~C~~~~-g~p~p~v~W~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~As 75 (90)
T d1gsma1 2 KPLQVEPPEPVVAVALGASRQLTCRLAC-ADRGASVQWRGLDTSLGA-----VQSDTGRSVLTVRNASLSAAGTRVCVGS 75 (90)
T ss_dssp CSEEEESCCSEEEEETTCCEEEEEEECC-SSTTCEEEEESSTTTTCC-----EEEESSEEEEEECSCCGGGCEEEEEEEE
T ss_pred cCcEEeCCCCeEEEEeCCcEEEEEEecC-CCCccEEEEEEeeeeeee-----eeccCceeeEEcCccChhhCCcEEEEEE
Confidence 3555555555555889999999999864 688999999998876632 2334566789999999999999999999
Q ss_pred cCCcceEEEEEEEEe
Q psy2166 575 NKYGSDVTKASLKCV 589 (805)
Q Consensus 575 n~~g~~~~~~~l~V~ 589 (805)
|..|..+.++.|.|.
T Consensus 76 n~~g~~~~s~~l~Vy 90 (90)
T d1gsma1 76 CGGRTFQHTVQLLVY 90 (90)
T ss_dssp ETTEEEEEEEEEEEE
T ss_pred eCCCcEEEEEEEEEC
Confidence 999999999998874
|
| >d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Perlecan Ig3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.49 E-value=7.5e-14 Score=111.51 Aligned_cols=88 Identities=13% Similarity=0.151 Sum_probs=72.1
Q ss_pred CeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEe
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWN 145 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 145 (805)
|.+.+..+....+.+|++++|.|.+.+ +.|.+.|.|+|++..+..+.. .. .++ +|+|.+++.+|+|.|+|.|.|
T Consensus 2 ~~v~~~~p~~~~v~~G~~~~l~C~~~~-~~p~~~v~W~k~~~~~~~~~~-~~-~~~---~L~i~~v~~~d~G~Y~C~a~N 75 (89)
T d1gl4b_ 2 IMVTVEEQRSQSVRPGADVTFICTAKS-KSPAYTLVWTRLHNGKLPSRA-MD-FNG---ILTIRNVQPSDAGTYVCTGSN 75 (89)
T ss_dssp EEEEECSCCEEEECTTCCEEEEEEEEE-SSSCCEEEEEEGGGBCCCTTE-EE-ETT---EEEECSCCGGGCEEEEEEEEC
T ss_pred CEEEEcCCCeEEEeCCCcEEEEEEccC-CCCCCEEEEecCCceeecccc-Ee-ece---EEEEecCCcccCEEEEEEEEE
Confidence 455555666789999999999999974 578899999999988776542 22 222 799999999999999999999
Q ss_pred CCeeEEEEEEEEEe
Q psy2166 146 LAGETFTSTTIYCS 159 (805)
Q Consensus 146 ~~g~~~~~~~l~V~ 159 (805)
..|.....+.|.|+
T Consensus 76 ~~G~~~~~~~l~V~ 89 (89)
T d1gl4b_ 76 MFAMDQGTATLHVQ 89 (89)
T ss_dssp SSCEEEEEEEEEEC
T ss_pred CCCEEEEEEEEEEC
Confidence 99999888888873
|
| >d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR2a [TaxId: 9606]
Probab=99.49 E-value=7.7e-15 Score=119.23 Aligned_cols=81 Identities=22% Similarity=0.323 Sum_probs=67.5
Q ss_pred cccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEE-EeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEE
Q psy2166 507 QLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT-FHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKAS 585 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~ 585 (805)
.+.+|+++.|.|.+. |.|.|.|+|+|||++|..+.++.. ....+...|.|.+++.+|+|.|+|.|.|..|..+.++.
T Consensus 16 ~v~~G~~v~l~C~~~--g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 93 (97)
T d3dara1 16 AVPAANTVKFRCPAG--GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 93 (97)
T ss_dssp EECTTCCEEEECCEE--EESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred EECCCCcEEEEEEEe--EECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEE
Confidence 478999999999999 678899999999999975543321 22233347999999999999999999999999999999
Q ss_pred EEEe
Q psy2166 586 LKCV 589 (805)
Q Consensus 586 l~V~ 589 (805)
|.|.
T Consensus 94 l~Vl 97 (97)
T d3dara1 94 LDVV 97 (97)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9873
|
| >d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=4.5e-14 Score=113.65 Aligned_cols=90 Identities=18% Similarity=0.386 Sum_probs=76.6
Q ss_pred cCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCC-CceEEEecCcEEEEEEcccccCCCeEEEE
Q psy2166 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG-SRFKTTADFGFVTLDLTEVYDRDQGIYTC 141 (805)
Q Consensus 63 ~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~-~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 141 (805)
..+|.|+..+.+.+.|.+|+.+.|.|.+. .|.+.|+|+|||..|..+ .++.+..+++.++|.|.++..+|+|.|+|
T Consensus 3 ~~~~~f~~~l~~~~~v~~G~~v~l~c~v~---~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c 79 (94)
T d1pd6a_ 3 KKSTAFQKKLEPAYQVSKGHKIRLTVELA---DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQC 79 (94)
T ss_dssp STTSSCSEECCSEEEEETTSCEEEEEECS---SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEE
T ss_pred CCCCcEEEeCCCCEEECcCCeEEEEEEEC---CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEE
Confidence 35788988888778899999999999985 578899999999999765 56888888889999999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEe
Q psy2166 142 RAWNLAGETFTSTTIYCS 159 (805)
Q Consensus 142 ~a~n~~g~~~~~~~l~V~ 159 (805)
.|.| ..+++.|.|.
T Consensus 80 ~a~n----~~~s~~l~V~ 93 (94)
T d1pd6a_ 80 VVGG----EKCSTELFVK 93 (94)
T ss_dssp EETT----EEECCEEEEE
T ss_pred EEee----EEEEEEEEEE
Confidence 9954 4566667764
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Probab=99.47 E-value=3.4e-15 Score=118.79 Aligned_cols=84 Identities=21% Similarity=0.290 Sum_probs=73.7
Q ss_pred eeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCC
Q psy2166 694 FTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKW 773 (805)
Q Consensus 694 ~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~ 773 (805)
|..++.+. .+.+|+++.|.|.+ +.|.|.+.|+|||+++.++.++.+..+++.+.|.|.++..+|+|.|+|.|.|..
T Consensus 4 i~~~l~d~-~v~~G~~~~~~c~v---s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~ 79 (89)
T d1tiua_ 4 VEKPLYGV-EVFVGETAHFEIEL---SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAK 79 (89)
T ss_dssp CSBCCCCE-EEETTSCCCEEEBC---SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCB
T ss_pred EEcCCcCE-EEeCCCcEEEEEEE---CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceE
Confidence 34456777 99999999999997 568999999999999999999999999999999999999999999999997754
Q ss_pred ccEEEEEEEEEE
Q psy2166 774 GQAEISVNLECV 785 (805)
Q Consensus 774 G~~~~~~~l~V~ 785 (805)
.+++|+|.
T Consensus 80 ----~sa~l~V~ 87 (89)
T d1tiua_ 80 ----SAANLKVK 87 (89)
T ss_dssp ----CCEEEEEE
T ss_pred ----EEEEEEEE
Confidence 45677775
|
| >d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.8e-13 Score=109.22 Aligned_cols=87 Identities=15% Similarity=0.035 Sum_probs=71.3
Q ss_pred EecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCc
Q psy2166 499 ITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYG 578 (805)
Q Consensus 499 ~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g 578 (805)
...+.....+.+|+++.|.|.+. |.|.|.++|++++..+..+. .........|.|.+++.+|+|.|+|.|.|..|
T Consensus 4 ~i~P~~~~~~~~G~~v~l~C~~~--g~p~p~i~W~~~~~~~~~~~---~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g 78 (90)
T d1vcaa2 4 ETTPESRYLAQIGDSVSLTCSTT--GCESPFFSWRTQIDSPLNGK---VTNEGTTSTLTMNPVSFGNEHSYLCTATCESR 78 (90)
T ss_dssp EEESSSEEEEETTSCEEEEEEEE--SCSSCEEEEEETTCCCCSSE---EEEETTEEEEEESSCCGGGCSEEEEEEEETTE
T ss_pred EEECCCcEEEECCCEEEEEEecc--CCCCceEEEEecCccceeee---eeeecCCcEEEEecccccccceEEEEEEeCCC
Confidence 34444445478999999999999 88999999999887665432 23445667899999999999999999999999
Q ss_pred ceEEEEEEEEee
Q psy2166 579 SDVTKASLKCVS 590 (805)
Q Consensus 579 ~~~~~~~l~V~~ 590 (805)
..+.++.|.|.+
T Consensus 79 ~~~~~~~v~V~s 90 (90)
T d1vcaa2 79 KLEKGIQVEIYS 90 (90)
T ss_dssp EEEEEEEEEEEB
T ss_pred EEEEEEEEEEEC
Confidence 999999998863
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.3e-13 Score=114.41 Aligned_cols=90 Identities=18% Similarity=0.203 Sum_probs=72.4
Q ss_pred CeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEee------------CcEEEEEEcCCCC
Q psy2166 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA------------FGMVVLEILGTKI 759 (805)
Q Consensus 692 P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~------------~~~~~L~i~~v~~ 759 (805)
|.|.......+.+.+|+++.|.|.+. |.|.|.|.|++||..+........... ....+|.|.+++.
T Consensus 2 P~i~~p~~~~i~v~~G~~v~l~C~v~--g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~ 79 (107)
T d1iray3 2 PVIVSPANETMEVDLGSQIQLICNVT--GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIES 79 (107)
T ss_dssp CEEEECCSEEEECCTTCCEEEEEEEE--ECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCG
T ss_pred CCEEEECCCEEEEeCCCEEEEEEEec--cCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecch
Confidence 56666554433789999999999999 999999999999999876654322110 0135799999999
Q ss_pred CCCE-EEEEEEEcCCccEEEEEEEE
Q psy2166 760 EDTG-VYTCRATNKWGQAEISVNLE 783 (805)
Q Consensus 760 ~d~G-~Y~C~a~N~~G~~~~~~~l~ 783 (805)
+|.| .|+|.|.|.+|.++..++|+
T Consensus 80 ~D~g~~Y~C~A~N~~G~~~~~i~L~ 104 (107)
T d1iray3 80 RFYKHPFTCFAKNTHGIDAAYIQLI 104 (107)
T ss_dssp GGGSSCEEEEEECSSCEEEEEEEEE
T ss_pred HHCCcEEEEEEEeCCCeEEEEEEEE
Confidence 9999 59999999999999988886
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.46 E-value=3.6e-14 Score=118.70 Aligned_cols=84 Identities=19% Similarity=0.148 Sum_probs=64.4
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEE--------EeeCcEEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT--------VHAFGMVVLEILGTKIEDTGVYTCRATNKWG 774 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~--------~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G 774 (805)
.+.+|+.+.|.|.+. .|+|.+.|+|+|+|..+........ ........|.|.+++.+|+|.|+|.|.|.+|
T Consensus 13 ~v~~G~~v~L~C~~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G 91 (110)
T d1f97a2 13 SVTIGNRAVLTCSEH-DGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYG 91 (110)
T ss_dssp EEETTSCEEEEEECS-CCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSS
T ss_pred EEecCCeEEEEEEee-cCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCC
Confidence 678999999999985 3899999999999998876543221 1222234699999999999999999999999
Q ss_pred cEEEEEEEEEEEe
Q psy2166 775 QAEISVNLECVVW 787 (805)
Q Consensus 775 ~~~~~~~l~V~~~ 787 (805)
....+..+.+.+.
T Consensus 92 ~~~~s~~v~l~V~ 104 (110)
T d1f97a2 92 TAMRSEAAHMDAV 104 (110)
T ss_dssp CCEECCCEEEEEE
T ss_pred cEEEEEEEEEEEE
Confidence 8887666655543
|
| >d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.45 E-value=8.8e-14 Score=111.49 Aligned_cols=90 Identities=14% Similarity=0.202 Sum_probs=71.5
Q ss_pred CceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEc
Q psy2166 496 PKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATN 575 (805)
Q Consensus 496 P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 575 (805)
+.|...+.+.. +.+|+.+.|.|.+. |.|.|.++|+|+|+.+....+........ ..|.|.+++.+|+|.|+|.|.|
T Consensus 2 ~~F~~~P~~~~-v~~G~~~~l~C~v~--g~p~p~v~W~~~~~~i~~~~~~~~~~~~~-~~L~I~~~~~~D~G~Y~C~a~n 77 (92)
T d1epfa2 2 LMFKNAPTPQE-FKEGEDAVIVCDVV--SSLPPTIIWKHKGRDVILKKDVRFIVLSN-NYLQIRGIKKTDEGTYRCEGRI 77 (92)
T ss_dssp SEEEECCSSEE-CCTTSCEEECCEEE--CSSCCEEEEEETTEEGGGGCCTTEEECTT-SCEEETTCCGGGCEEEEEEEEE
T ss_pred cEEEEcCCCEE-EeCCCcEEEEEEEe--ecCCCeEEEEEcCcccccccceeeeeeee-eeEEECCCCHHhCEEEEEEEEE
Confidence 45666666654 99999999999999 78999999999999997554433322222 1499999999999999999999
Q ss_pred CCcceEEEEEEEEe
Q psy2166 576 KYGSDVTKASLKCV 589 (805)
Q Consensus 576 ~~g~~~~~~~l~V~ 589 (805)
..|.......|.|.
T Consensus 78 ~~~~~~~~~~i~Vi 91 (92)
T d1epfa2 78 LARGEINFKDIQVI 91 (92)
T ss_dssp GGGTEEEEEEEEEE
T ss_pred CcCCEEEEEEEEEE
Confidence 98888777777764
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=4.7e-14 Score=116.37 Aligned_cols=91 Identities=13% Similarity=0.108 Sum_probs=69.9
Q ss_pred CeeeecCCcccccCCCCeEEEEEEEeecCCC-CeEEEEEECCEEccCC---CCeEEEee--CcEEEEEEcCCCCCCCEEE
Q psy2166 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQ-TMTVEFLYNGKPIEAS---HRIRTVHA--FGMVVLEILGTKIEDTGVY 765 (805)
Q Consensus 692 P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p-~~~v~W~~~g~~l~~~---~~~~~~~~--~~~~~L~i~~v~~~d~G~Y 765 (805)
|.|...+.+. .+.+|+++.|.|.+. |.| .|.|+|+|++..+... .......+ .+...|.|.++..+|+|.|
T Consensus 4 ~~fi~~~~~~-~v~~G~~v~L~C~v~--g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 80 (104)
T d2aw2a1 4 QLYIKRQSEH-SILAGDPFELECPVK--YCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSY 80 (104)
T ss_dssp EECCCTTEEE-EEETTSCEEEEEEEE--CSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEE
T ss_pred cEEEecCCeE-EEeCCCeEEEEEEEE--eeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeE
Confidence 3455556666 899999999999999 888 5899999988655321 22222222 2356799999999999999
Q ss_pred EEEEEcCCccEE-EEEEEEEE
Q psy2166 766 TCRATNKWGQAE-ISVNLECV 785 (805)
Q Consensus 766 ~C~a~N~~G~~~-~~~~l~V~ 785 (805)
+|.|.|..|... .+++|.|.
T Consensus 81 ~C~A~N~~G~~~s~~~~l~V~ 101 (104)
T d2aw2a1 81 RCSANFQSNLIESHSTTLYVT 101 (104)
T ss_dssp EEEEEETTEEEECCCEEEEEE
T ss_pred EEEEEcCCCeEEEEEEEEEEE
Confidence 999999999865 47888885
|
| >d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=2e-13 Score=112.02 Aligned_cols=92 Identities=21% Similarity=0.296 Sum_probs=75.7
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCc-EEEEEECCEEc----c--CCCceEEEeeCCEEEEEEccCCC-CCC
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDL-VVEWFYNGKKL----P--HGHRYRTFHDFGIVILDILYCYE-ENS 566 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~-~v~W~~~g~~l----~--~~~~~~~~~~~~~~~L~i~~v~~-~d~ 566 (805)
||.|...+.... +.+|+.++|.|.+. |.|.+ .++|+|++..+ . ...++.+...+..+.|.|.++.. .|+
T Consensus 2 PP~i~~~~~~~~-v~~G~~v~l~C~v~--g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~ 78 (101)
T d3b5ha1 2 PPRVKAVKSSEH-INEGETAMLVCKSE--SVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADP 78 (101)
T ss_dssp SCCCEESCSEEE-ECTTSCEEEEEECC--CSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSS
T ss_pred CceEEEcCCcEE-ECcCCeEEEEEEEE--ecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCC
Confidence 788887766555 89999999999999 66665 89999976332 2 23467777888889999999984 799
Q ss_pred EEEEEEEEcCCcceEEEEEEEEe
Q psy2166 567 GVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 567 G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
|.|+|.|.|..|..+..+.|.|.
T Consensus 79 G~Y~C~A~N~~G~~~~~~~L~Vr 101 (101)
T d3b5ha1 79 GQYRCNGTSSKGSDQAIITLRVR 101 (101)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEC
T ss_pred EEEEEEEEECCCEEEEEEEEEEC
Confidence 99999999999999999999873
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=3.7e-15 Score=123.50 Aligned_cols=93 Identities=17% Similarity=0.161 Sum_probs=71.4
Q ss_pred CeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEee-------CcEEEEEEcCCCCCCCEE
Q psy2166 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA-------FGMVVLEILGTKIEDTGV 764 (805)
Q Consensus 692 P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-------~~~~~L~i~~v~~~d~G~ 764 (805)
|.+....... .+.+|+.++|.|.+. .|+|.|.+.|+|+|..+....+...... .....|.|.++..+|+|.
T Consensus 3 P~~p~~~~~~-~v~~G~~v~l~C~~~-~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~ 80 (104)
T d1nbqa2 3 PSKPTVNIPS-SATIGNRAVLTCSEQ-DGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGE 80 (104)
T ss_dssp CCCCCCCCBS-EEETTSCEEECCCCC-SCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCC
T ss_pred CcccccCCCC-EEecCCcEEEEEEee-cCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcE
Confidence 3333333344 788999999999984 3899999999999998877654332111 122469999999999999
Q ss_pred EEEEEEcCCccEEEEEEEEEEE
Q psy2166 765 YTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 765 Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
|+|.|.|.+|++..++.|.|.+
T Consensus 81 Y~C~a~N~~G~~~~s~~v~v~v 102 (104)
T d1nbqa2 81 YSCEARNGYGTPMTSNAVRMEA 102 (104)
T ss_dssp EEEEEECSSSCCEECCCBCCEE
T ss_pred EEEEEEECCCceEEEEEEEEEE
Confidence 9999999999998888777765
|
| >d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=8.4e-14 Score=120.87 Aligned_cols=95 Identities=22% Similarity=0.313 Sum_probs=78.6
Q ss_pred CCCCceEec----CCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCC--------------------------
Q psy2166 493 AEAPKFITQ----ISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG-------------------------- 542 (805)
Q Consensus 493 ~~~P~~~~~----~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~-------------------------- 542 (805)
++||++... .++...+.+|+.++|.|.+. |.|.|.+.|+|++..+...
T Consensus 2 q~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~--G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (130)
T d1gxea_ 2 QEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPIS--GDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLC 79 (130)
T ss_dssp CBCCCSCCSSSCCCCCEEEESSSSCCCCEEECC--SBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCC
T ss_pred CCCCEEECCCCCCCCCCEEEEcCCeEEEEEEEE--EecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceee
Confidence 567887542 34555689999999999999 7899999999988765322
Q ss_pred ---CceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEEEEEEEEe
Q psy2166 543 ---HRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDVTKASLKCV 589 (805)
Q Consensus 543 ---~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 589 (805)
.++.+....+.+.|.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 80 ~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 129 (130)
T d1gxea_ 80 ETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 129 (130)
T ss_dssp SCSSSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred ccCceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence 24556666778899999999999999999999999999999999885
|
| >d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of trkB receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=2.4e-13 Score=111.39 Aligned_cols=96 Identities=21% Similarity=0.211 Sum_probs=77.2
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEee-----CCEEEEEEccCCCCCCE
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD-----FGIVILDILYCYEENSG 567 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-----~~~~~L~i~~v~~~d~G 567 (805)
..||.|.... . -..+....|.|.+. |.|.|+++|+|||+.|..+.+..+... ...+.|.|.+++.+|+|
T Consensus 2 ~~pP~it~~~-~---~~~~~~~~i~~~v~--G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G 75 (103)
T d1wwbx_ 2 HFAPTITFLE-S---PTSDHHWCIPFTVK--GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNG 75 (103)
T ss_dssp CCCCCCCCCC-C---CCCCCEEEEEEEEE--CSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCE
T ss_pred ccCCeeEEcC-C---CccceeEEEEEEEE--EeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCc
Confidence 4677764321 1 34678889999998 889999999999999987766654321 22457999999999999
Q ss_pred EEEEEEEcCCcceEEEEEEEEeeeeee
Q psy2166 568 VYECRATNKYGSDVTKASLKCVSKTNL 594 (805)
Q Consensus 568 ~Y~C~a~n~~g~~~~~~~l~V~~~~~~ 594 (805)
.|+|.|.|..|..+.++.|.|...|.+
T Consensus 76 ~Y~C~a~N~~G~~~~~~~v~V~~~P~i 102 (103)
T d1wwbx_ 76 DYTLIAKNEYGKDEKQISAHFMGWPGI 102 (103)
T ss_dssp EEEEEEECSSCEEEEEEEECCSCCCCC
T ss_pred eEEEEEeccCCEEEEEEEEEEEeCCCC
Confidence 999999999999999999999887753
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.44 E-value=1.4e-13 Score=108.84 Aligned_cols=74 Identities=19% Similarity=0.252 Sum_probs=59.2
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEE-EEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE-ISVN 781 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~-~~~~ 781 (805)
.+.+|++++|.|.+. .+.|.+.+.|+|||+.+.... ....|.|.+++.+|+|.|+|.|.|..|... ..+.
T Consensus 11 ~v~eG~~v~L~C~~~-~~~p~~~~~W~k~g~~~~~~~--------~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~ 81 (88)
T d2fcba2 11 EFQEGETIVLRCHSW-KDKPLVKVTFFQNGKSKKFSR--------SDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVT 81 (88)
T ss_dssp EECTTCCEEEEEEEG-GGCCCEEEEEEETTEEEEEES--------SCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred eEecCCeEEEEEEec-CCCCCcEEEEEeecccccccc--------cccccccCccCHHHCCeEEEEEEeCCCCEEeeeEE
Confidence 689999999999996 255778999999999875432 122699999999999999999999998653 4556
Q ss_pred EEEE
Q psy2166 782 LECV 785 (805)
Q Consensus 782 l~V~ 785 (805)
|+|+
T Consensus 82 l~V~ 85 (88)
T d2fcba2 82 ITVQ 85 (88)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6654
|
| >d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=2.6e-13 Score=108.15 Aligned_cols=82 Identities=15% Similarity=0.212 Sum_probs=69.9
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCC--ceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCee
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS--RFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGE 149 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~--~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~ 149 (805)
+..++.+.+|+.++|.|.+. .|.+.+.|+|||.++..+. ++.+..+++.++|.|.+++.+|+|.|+|.|.|
T Consensus 6 ~l~~~~v~~G~~v~l~C~v~---~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n---- 78 (90)
T d1x44a1 6 QLEDTTAYCGERVELECEVS---EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG---- 78 (90)
T ss_dssp CCCCEEEETTEEEEEEEECS---SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----
T ss_pred CCCCEEEeCCCcEEEEEEEC---CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec----
Confidence 34478999999999999985 5778999999999987664 57888888899999999999999999999955
Q ss_pred EEEEEEEEEec
Q psy2166 150 TFTSTTIYCST 160 (805)
Q Consensus 150 ~~~~~~l~V~~ 160 (805)
..+++.|+|+.
T Consensus 79 ~~~~a~l~V~~ 89 (90)
T d1x44a1 79 GQSSAKLSVDL 89 (90)
T ss_dssp EEEEEEEEEEC
T ss_pred ceEEEEEEEEE
Confidence 56677888764
|
| >d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Tyrosine-protein kinase receptor tyro3, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=3.4e-13 Score=105.57 Aligned_cols=81 Identities=20% Similarity=0.319 Sum_probs=65.2
Q ss_pred CeEEecCCCCceecCCCcEEEEEEEecCCCCCc-eEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEE
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNL-KIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAW 144 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 144 (805)
|.|+..+. +..+.+|+.++|.|.+. |.|.| .|+|+|||..+..... . .++|..+..+|+|.|+|.|.
T Consensus 2 P~f~~~P~-~~~v~~G~~~~l~C~~~--g~P~P~~i~W~k~g~~i~~~~~-------~--~~~l~~~~~~d~G~Y~C~A~ 69 (85)
T d1rhfa2 2 PFFTVEPK-DLAVPPNAPFQLSCEAV--GPPEPVTIVWWRGTTKIGGPAP-------S--PSVLNVTGVTQSTMFSCEAH 69 (85)
T ss_dssp CEEEECCC-CEEECTTCCEEEEEEEE--CSSSCCEEEEEETTEECSCSEE-------S--SEEEEECCCSSCEEEEEEEE
T ss_pred CcEEEeCC-cEEEcCCCEEEEEEEEe--cCCcceEEEEEECCEECCCCCC-------c--ceEEecCCccccEEEEEEEE
Confidence 78887765 78899999999999998 78877 8999999999875432 1 34556667789999999999
Q ss_pred eCCeeEEE-EEEEEE
Q psy2166 145 NLAGETFT-STTIYC 158 (805)
Q Consensus 145 n~~g~~~~-~~~l~V 158 (805)
|..|...+ .++|.|
T Consensus 70 N~~G~~~S~~~~v~V 84 (85)
T d1rhfa2 70 NLKGLASSRTATVHL 84 (85)
T ss_dssp ETTEEEECCCEEEEE
T ss_pred cCCCcEEEEEEEEEE
Confidence 99997544 566665
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=3.1e-14 Score=113.65 Aligned_cols=86 Identities=15% Similarity=0.169 Sum_probs=70.4
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCC-eEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQT-MTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~-~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
.+|.|...+... ++.+|+++.|.|.+. |.|+ +.|+|+|+|..+....+.. ..+++ +|.|.+++.+|+|.|+|.
T Consensus 5 ~~P~~~~~~~~v-~~~~G~~v~L~C~~~--g~~~~~~i~W~k~~~~l~~~~~~~-~~~~~--~L~I~~v~~~D~G~Y~C~ 78 (93)
T d1n26a1 5 RCPAQEVARGVL-TSLPGDSVTLTCPGV--EPEDNATVHWVLRKPAAGSHPSRW-AGMGR--RLLLRSVQLHDSGNYSCY 78 (93)
T ss_dssp CCCCCCCCTTEE-EECTTCCEEEECTTS--CTTCCSEEEEEEECSSSSCCCEEE-EEESS--EEEECSCCGGGCEEEEEE
T ss_pred CCCcEEeCCCCE-EEeCCCcEEEEEEee--cCCCCceEEEEEccccccceeeEE-ecCCC--EEEECCCChhcCEEEEEE
Confidence 578888888888 999999999999998 7665 6999999999997776554 44455 699999999999999999
Q ss_pred EEcCCccEEEEEEEEE
Q psy2166 769 ATNKWGQAEISVNLEC 784 (805)
Q Consensus 769 a~N~~G~~~~~~~l~V 784 (805)
|.|..+. ++.|.|
T Consensus 79 a~n~~~~---t~~l~V 91 (93)
T d1n26a1 79 RAGRPAG---TVHLLV 91 (93)
T ss_dssp SSSSCSC---EEEEEE
T ss_pred ECCcccc---EEEEEE
Confidence 9887644 445555
|
| >d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fibroblast growth factor receptor, FGFR species: Human (Homo sapiens), FGFR1 [TaxId: 9606]
Probab=99.43 E-value=3.5e-13 Score=112.48 Aligned_cols=93 Identities=23% Similarity=0.262 Sum_probs=72.4
Q ss_pred CCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCC----CCc--e-------EEEecCcEEEEEEcc
Q psy2166 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL----GSR--F-------KTTADFGFVTLDLTE 130 (805)
Q Consensus 64 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~----~~~--~-------~~~~~~~~~~L~I~~ 130 (805)
.+|.|...++.++.+.+|++++|.|.+. |.|.|.|.|+|++..... ... . ....+.....|.|.+
T Consensus 3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~--g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 80 (109)
T d2fdbp2 3 HRPILQAGLPANASTVVGGDVEFVCKVY--SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRN 80 (109)
T ss_dssp SCCEECTTCSCCEEECTTCCEEEEEEEE--CSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECS
T ss_pred CCCEEcCCCCCCEEEecCCcEEEEEEEE--EcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECC
Confidence 4688877777789999999999999999 799999999997654321 111 1 111223456899999
Q ss_pred cccCCCeEEEEEEEeCCeeEEEEEEEEE
Q psy2166 131 VYDRDQGIYTCRAWNLAGETFTSTTIYC 158 (805)
Q Consensus 131 ~~~~D~G~Y~C~a~n~~g~~~~~~~l~V 158 (805)
++.+|+|.|+|.|.|..|....++.|+|
T Consensus 81 ~~~~D~G~Y~C~a~N~~G~~~~~~~L~V 108 (109)
T d2fdbp2 81 VTFEDAGEYTCLAGNSIGISFHSAWLTV 108 (109)
T ss_dssp CCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred CCHHHCeEEEEEEEECCCEEEEEEEEEE
Confidence 9999999999999999999999999987
|
| >d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cardiac myosin binding protein C, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=4.2e-13 Score=111.85 Aligned_cols=93 Identities=11% Similarity=0.142 Sum_probs=73.1
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCC---CceEEEEECCEecCC---CCceEEEe------cCcEEEEEEcccc
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDP---NLKIEWIFNGKPLEL---GSRFKTTA------DFGFVTLDLTEVY 132 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p---~~~v~W~k~g~~i~~---~~~~~~~~------~~~~~~L~I~~~~ 132 (805)
.|.|+..+. ++.+.+|++++|.|.+. |.| .|.|.|+|++..... +.++.... ....++|.|.+++
T Consensus 4 ~~~Fv~~P~-~~~v~~G~~v~l~C~v~--g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~ 80 (110)
T d2avga1 4 IGLFVMRPQ-DGEVTVGGSITFSARVA--GASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQ 80 (110)
T ss_dssp TCSEEECCC-CEEEETTSEEEEEEEEE--CCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCC
T ss_pred CCEeEECCC-eEEEECCCCEEEEEeec--CCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccC
Confidence 467776655 78999999999999999 566 678999998754322 22333222 1245689999999
Q ss_pred cCCCeEEEEEEEeCCeeEEEEEEEEEec
Q psy2166 133 DRDQGIYTCRAWNLAGETFTSTTIYCST 160 (805)
Q Consensus 133 ~~D~G~Y~C~a~n~~g~~~~~~~l~V~~ 160 (805)
.+|+|.|+|.|.|..|...+.+.|.|..
T Consensus 81 ~~D~G~Y~C~a~N~~G~~~~~~~L~V~~ 108 (110)
T d2avga1 81 PAFTGGYRCEVSTKDKFDCSNFNLTVHE 108 (110)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEEEEES
T ss_pred HHHCcEEEEEEEECCCeEEEEEEEEEEe
Confidence 9999999999999999999999999875
|
| >d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Intercellular adhesion molecule-1, ICAM-1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.3e-14 Score=113.17 Aligned_cols=82 Identities=13% Similarity=0.147 Sum_probs=65.3
Q ss_pred CCceEec-CCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEE
Q psy2166 495 APKFITQ-ISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRA 573 (805)
Q Consensus 495 ~P~~~~~-~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 573 (805)
+|+|... .+....+.+|+.+.|.|.+. |.|.|.++|+|||..+.... .+.+++.+|+|.|+|.|
T Consensus 2 ~P~i~~~~~p~~~~~~~G~~~~l~C~a~--G~P~P~v~W~k~g~~~~~~~-------------~~~~v~~~d~G~Y~C~A 66 (84)
T d2oz4a3 2 GPRLDERDCPGNWTWPENSQQTPMCQAW--GNPLPELKCLKDGTFPLPIG-------------ESVTVTRDLEGTYLCRA 66 (84)
T ss_dssp EEECCGGGSCSEEEEETTCEECCCCCCE--EESCCEEEEEETTTEECCTT-------------SCEECCGGGCEEEEEEE
T ss_pred CCceeecCCCccEEEeCCCEEEEEEEEe--EcCccEEEEEEeeccceeee-------------eeeccccCCCCEEEEEE
Confidence 3555432 23444589999999999999 77999999999998775442 34456789999999999
Q ss_pred EcCCcceEEEEEEEEeee
Q psy2166 574 TNKYGSDVTKASLKCVSK 591 (805)
Q Consensus 574 ~n~~g~~~~~~~l~V~~~ 591 (805)
+|..|..+..+.|.|..+
T Consensus 67 ~N~~G~~~~~~~l~V~~P 84 (84)
T d2oz4a3 67 RSTQGEVTREVTVNVLSP 84 (84)
T ss_dssp EETTEEEEEEEEEEEECC
T ss_pred EcCCCEEEEEEEEEEECC
Confidence 999999999999998763
|
| >d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=3.5e-13 Score=108.00 Aligned_cols=85 Identities=18% Similarity=0.274 Sum_probs=70.9
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEec--CcEEEEEEcccccCCCeEEEEEEEeCCeeE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTAD--FGFVTLDLTEVYDRDQGIYTCRAWNLAGET 150 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~ 150 (805)
|.++.+.+|+.++|.|.+. +.|.+.|.|+|||..+....++.+... .....|.|.+++.+|+|.|+|.|.|..|..
T Consensus 3 P~~~~v~~G~~~~l~C~v~--g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 80 (91)
T d1rhfa1 3 PVKLTVSQGQPVKLNCSVE--GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETE 80 (91)
T ss_dssp CEEEEEETTCCEEEEEEEE--SCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCE
T ss_pred CeeEEEcCCCeEEEEEEEE--ecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCE
Confidence 3467899999999999998 789999999999999988776555433 345689999999999999999999999876
Q ss_pred E-EEEEEEEe
Q psy2166 151 F-TSTTIYCS 159 (805)
Q Consensus 151 ~-~~~~l~V~ 159 (805)
. ..+.|.|.
T Consensus 81 ~S~~~~l~V~ 90 (91)
T d1rhfa1 81 ISQPVWLTVE 90 (91)
T ss_dssp ECCCEEEEEE
T ss_pred EEEEEEEEEE
Confidence 4 46777764
|
| >d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: NT3 binding domain of trkC receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=7.1e-13 Score=109.24 Aligned_cols=96 Identities=16% Similarity=0.112 Sum_probs=75.6
Q ss_pred CCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEe--eC--CEEEEEEccCCCCCCE
Q psy2166 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFH--DF--GIVILDILYCYEENSG 567 (805)
Q Consensus 492 ~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~--~~--~~~~L~i~~v~~~d~G 567 (805)
+..||++..... ...+....|.|.+. |.|.|.++|+|||++|..+.++.+.. +. ..+.|.|.+++.+|+|
T Consensus 2 V~~PP~i~~~~~----~~~~~~~~i~~~v~--G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G 75 (105)
T d1wwca_ 2 VYYPPRVVSLEE----PELRLEHCIEFVVR--GNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNG 75 (105)
T ss_dssp CCCCCCCCCCCC----CCCCCEEEEEEEEE--CSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCE
T ss_pred EEcCCeeEEeCC----CEEEEEEEEEEEEE--EeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccce
Confidence 567888754221 23455667888998 88999999999999998877665432 22 2457999999999999
Q ss_pred EEEEEEEcCCcceEEEEEEEEeeeee
Q psy2166 568 VYECRATNKYGSDVTKASLKCVSKTN 593 (805)
Q Consensus 568 ~Y~C~a~n~~g~~~~~~~l~V~~~~~ 593 (805)
.|+|.|.|..|..+.++.|.|..+|.
T Consensus 76 ~Y~C~a~N~~G~~~~~~~v~V~~~P~ 101 (105)
T d1wwca_ 76 NYTLIAKNPLGTANQTINGHFLKEPF 101 (105)
T ss_dssp EEEEEEEETTEEEEEEEEECCSCCCC
T ss_pred EEEEEEEcCCCEEEEEEEEEEEeCCC
Confidence 99999999999999999999877654
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.41 E-value=2e-13 Score=108.13 Aligned_cols=74 Identities=22% Similarity=0.277 Sum_probs=59.9
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEE-EEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAE-ISVN 781 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~-~~~~ 781 (805)
.|.+|++++|.|.+. .+.|.+.+.|+|||+.+... ...+ .|.|.+++.+|+|.|+|.|.|..|... ..+.
T Consensus 13 ~v~eG~~v~L~C~~~-~~~p~~~~~W~kng~~~~~~------~~~~--~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~ 83 (89)
T d1fnla2 13 VFKEEDPIHLRCHSW-KNTALHKVTYLQNGKDRKYF------HHNS--DFHIPKATLKDSGSYFCRGLVGSKNVSSETVN 83 (89)
T ss_dssp EEETTCCEEEEEEEC-TTCCCEEEEEEETTEEEEEE------EECC--CEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred eEccCCeEEEEEEec-CCCCCcEEEEEEccccccee------cccc--ccEECccceeccceEEEEEEeCCCCeEEeeEE
Confidence 689999999999986 25577799999999887532 2222 689999999999999999999999654 5677
Q ss_pred EEEE
Q psy2166 782 LECV 785 (805)
Q Consensus 782 l~V~ 785 (805)
|+|+
T Consensus 84 itV~ 87 (89)
T d1fnla2 84 ITIT 87 (89)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7775
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.41 E-value=4.5e-14 Score=116.36 Aligned_cols=85 Identities=26% Similarity=0.227 Sum_probs=65.2
Q ss_pred eeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCC--CCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEc
Q psy2166 694 FTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS--HRIRTVHAFGMVVLEILGTKIEDTGVYTCRATN 771 (805)
Q Consensus 694 ~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~--~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N 771 (805)
|...+.+.+.+.+|+.+.|.|.+. .|.|.|.|+|+|||..+... .+..+....+ .|.|.+++.+|+|.|+|.|.|
T Consensus 6 F~~~~~~~v~v~eG~~~~l~C~~~-~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N 82 (105)
T d1cs6a2 6 FSAEERDPVKITEGWGVMFTCSPP-PHYPALSYRWLLNEFPNFIPADGRRFVSQTTG--NLYIAKTEASDLGNYSCFATS 82 (105)
T ss_dssp CCSSCCCCEEEETTSCEEECCCCC-SEESCCEEEEEESSTTCBCCCCSSEEECTTTC--CEEESSCCGGGCEEEEEEEEE
T ss_pred ccCCCCCCEEEeCCCeEEEEEEcc-CCCCCCEEEEEEeeccccccccceeeeecCCC--EEeecccccccCcEEEEEEEE
Confidence 333333333899999999999973 28899999999999765433 3443333344 699999999999999999999
Q ss_pred CCccEEEEEE
Q psy2166 772 KWGQAEISVN 781 (805)
Q Consensus 772 ~~G~~~~~~~ 781 (805)
.+|..+.++.
T Consensus 83 ~~g~~~~~v~ 92 (105)
T d1cs6a2 83 HIDFITKSVF 92 (105)
T ss_dssp EETTEEEEEE
T ss_pred CCCCEEEEEE
Confidence 9998887643
|
| >d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.39 E-value=5.2e-13 Score=108.16 Aligned_cols=84 Identities=15% Similarity=0.154 Sum_probs=68.9
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEE--EecCcEEEEEEcccccCCCeEEEEEEEeCCeeE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT--TADFGFVTLDLTEVYDRDQGIYTCRAWNLAGET 150 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~--~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~ 150 (805)
+.++.+.+|++++|.|.+. |.|.+.|.|+|||..+....+..+ .......+|.|.+++.+|+|.|+|.|.|..|..
T Consensus 10 ~~~~~~~~G~~v~l~C~~~--g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 87 (97)
T d1biha3 10 SKDMMAKAGDVTMIYCMYG--SNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKP 87 (97)
T ss_dssp CCSEEEETTSCEEEEEEEE--CSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSC
T ss_pred CCCEEEecCCeEEEEEEEE--EecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcE
Confidence 3478999999999999998 689999999999999976654433 333344589999999999999999999999876
Q ss_pred E-EEEEEEE
Q psy2166 151 F-TSTTIYC 158 (805)
Q Consensus 151 ~-~~~~l~V 158 (805)
. .+..|+|
T Consensus 88 ~s~s~~L~V 96 (97)
T d1biha3 88 QKHSLKLTV 96 (97)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 4 4677776
|
| >d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.39 E-value=9.5e-13 Score=106.48 Aligned_cols=83 Identities=20% Similarity=0.344 Sum_probs=71.2
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEE-E
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFT-S 153 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~-~ 153 (805)
+..|.+|+.++|.|.+. ++.+.|.|+|+|..+..+.++.+..++. +|.|.+++.+|+|.|+|.|.|..|...+ .
T Consensus 12 ~~~v~~g~~v~l~C~~~---~~~~~v~W~~~~~~l~~~~~~~~~~~~~--~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~ 86 (96)
T d1l6za2 12 NTTVKELDSVTLTCLSN---DIGANIQWLFNSQSLQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEISNPVSVRRSNS 86 (96)
T ss_dssp CSEECTTSCEEEEECCC---CSSCEEEEEETTEECCCCTTEEEETTTT--EEEECSCCGGGCEEEEEEEESSSCCEECCC
T ss_pred ceEEeCCCeEEEEEccC---CCCCCEEEEEeeeecccccceeccCCce--EEEEeccchhhceEEEEEEEeCCCCeEEEe
Confidence 56899999999999876 4567999999999999999988876655 7999999999999999999999887754 5
Q ss_pred EEEEEeccc
Q psy2166 154 TTIYCSTKE 162 (805)
Q Consensus 154 ~~l~V~~~~ 162 (805)
+.|+|..+|
T Consensus 87 ~~L~V~~~P 95 (96)
T d1l6za2 87 IKLDIIFDP 95 (96)
T ss_dssp CEEEECCSC
T ss_pred EEEEEEcCC
Confidence 778886554
|
| >d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=5.8e-14 Score=112.74 Aligned_cols=89 Identities=10% Similarity=0.139 Sum_probs=74.1
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCE-EEEEEE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSG-VYECRA 573 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a 573 (805)
.|.|...+++.. +.+|+.+.|.|.+. |.|.|.++|+++|..+....+. ........|.|.+++.+|+| .|+|.|
T Consensus 2 ~P~i~~~~~~~~-v~~G~~v~l~C~~~--g~P~p~v~W~~~~~~~~~~~~~--~~~~~~~~L~i~~~~~~d~G~~Y~C~a 76 (92)
T d2ifga1 2 VPTLKVQVPNAS-VDVGDDVLLRCQVE--GRGLEQAGWILTELEQSATVMK--SGGLPSLGLTLANVTSDLNRKNVTCWA 76 (92)
T ss_dssp CCEEEEECCSSC-CBTTCCEEEEEEEE--CSSCCCCCEEESCCCSSEEECC--CCCSSEEEEEEESCCSTTTTCCEEECC
T ss_pred CCEEEEeCCCEE-EeCCCEEEEeeecc--CCCCcEEEEEECCceeeeeeee--eeeccceeEEEccccccccceEEEEEE
Confidence 588888888765 89999999999999 7899999999999877543221 23345667999999999999 799999
Q ss_pred EcCCcceEEEEEEEE
Q psy2166 574 TNKYGSDVTKASLKC 588 (805)
Q Consensus 574 ~n~~g~~~~~~~l~V 588 (805)
.|..|....++.|.|
T Consensus 77 ~N~~G~~~~s~~l~V 91 (92)
T d2ifga1 77 ENDVGRAEVSVQVNV 91 (92)
T ss_dssp EETTEECCEEECCCC
T ss_pred EcCCCEEEEEEEEEE
Confidence 999999999888876
|
| >d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.38 E-value=6.3e-13 Score=105.02 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=61.2
Q ss_pred ccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcceE-EEEEE
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSDV-TKASL 586 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~-~~~~l 586 (805)
+.+|++++|.|.+.+ +.|.+.+.|+|||+.+.... ....|.|.+++.+|+|.|+|.|.|..|... ..+.|
T Consensus 12 v~eG~~v~L~C~~~~-~~p~~~~~W~k~g~~~~~~~--------~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l 82 (88)
T d2fcba2 12 FQEGETIVLRCHSWK-DKPLVKVTFFQNGKSKKFSR--------SDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTI 82 (88)
T ss_dssp ECTTCCEEEEEEEGG-GCCCEEEEEEETTEEEEEES--------SCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred EecCCeEEEEEEecC-CCCCcEEEEEeecccccccc--------cccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEE
Confidence 889999999999975 56788999999998874321 223599999999999999999999988754 56778
Q ss_pred EEeee
Q psy2166 587 KCVSK 591 (805)
Q Consensus 587 ~V~~~ 591 (805)
.|..+
T Consensus 83 ~V~~P 87 (88)
T d2fcba2 83 TVQAP 87 (88)
T ss_dssp EECCC
T ss_pred EEeCC
Confidence 77654
|
| >d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Twitchin species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]
Probab=99.38 E-value=3.7e-14 Score=112.64 Aligned_cols=81 Identities=16% Similarity=0.181 Sum_probs=70.9
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEE
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETF 151 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~ 151 (805)
+..++.|.+|++++|.|.+. .|.+.+.|+|||.++..+.++.+..+++.++|.|.+++.+|+|.|+|.|.|. .
T Consensus 7 ~l~d~~v~~G~~~~~~c~vs---~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~----~ 79 (89)
T d1tiua_ 7 PLYGVEVFVGETAHFEIELS---EPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANA----K 79 (89)
T ss_dssp CCCCEEEETTSCCCEEEBCS---SSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSC----B
T ss_pred CCcCEEEeCCCcEEEEEEEC---CCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECce----E
Confidence 33478999999999999975 6788999999999999999999999999999999999999999999999664 3
Q ss_pred EEEEEEEe
Q psy2166 152 TSTTIYCS 159 (805)
Q Consensus 152 ~~~~l~V~ 159 (805)
+++.|.|.
T Consensus 80 ~sa~l~V~ 87 (89)
T d1tiua_ 80 SAANLKVK 87 (89)
T ss_dssp CCEEEEEE
T ss_pred EEEEEEEE
Confidence 45667764
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=4.3e-13 Score=106.23 Aligned_cols=75 Identities=15% Similarity=0.172 Sum_probs=60.4
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccE-EEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA-EISVN 781 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~ 781 (805)
.|.+|+.++|.|.+. .+.|++.+.|||||+.+..... .. .|.|.+++.+|+|.|+|.|.|..|.. +..+.
T Consensus 11 ~V~eG~~v~L~C~~~-~~~~~~~~~w~k~g~~~~~~~~------~~--~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~ 81 (89)
T d1f2qa2 11 VVMEGQPLFLRCHGW-RNWDVYKVIYYKDGEALKYWYE------NH--NISITNATVEDSGTYYCTGKVWQLDYESEPLN 81 (89)
T ss_dssp EEETTSCEEEEEEEG-GGCCEEEEEEEETTEECCSCCC------SS--EEEESSCCGGGCEEEEEEEEETTEEEECCCEE
T ss_pred eEeCCCEEEEEEEec-CCCCCeEEEEEEeeeccccccc------cc--eEEEeeeeeecCcEEEEEEEeCCCCeEeeeEE
Confidence 689999999999997 2456779999999998865422 12 69999999999999999999998854 35566
Q ss_pred EEEEE
Q psy2166 782 LECVV 786 (805)
Q Consensus 782 l~V~~ 786 (805)
|+|..
T Consensus 82 i~V~~ 86 (89)
T d1f2qa2 82 ITVIK 86 (89)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 77654
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.38 E-value=4.1e-13 Score=110.32 Aligned_cols=88 Identities=18% Similarity=0.259 Sum_probs=67.2
Q ss_pred CeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccC------------CCCeEEEeeCcEEEEEEcCCCC
Q psy2166 692 PQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEA------------SHRIRTVHAFGMVVLEILGTKI 759 (805)
Q Consensus 692 P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~------------~~~~~~~~~~~~~~L~i~~v~~ 759 (805)
|.+...+.+. .+.+|+++.|.|.+. |.|.|.|.|+|++..+.. ..+. ....+ +|.|.++..
T Consensus 2 ~sV~t~~~~v-~v~~G~~v~l~C~~~--g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--tL~I~~v~~ 74 (102)
T d1f97a1 2 GSVYTAQSDV-QVPENESIKLTCTYS--GFSSPRVEWKFVQGSTTALVCYNSQITAPYADRV--TFSSS--GITFSSVTR 74 (102)
T ss_dssp CEEECSCSEE-EEETTCCEEEECEEE--SCSSEEEEEEEEETTEEEEEEETTEECGGGTTTE--EEETT--EEEESCCCG
T ss_pred CCEEccCCcE-EEeCCCEEEEEEEcC--CCCCCeEEEEeccccceeeeccccccccceeeEE--EecCC--EEEEeECCc
Confidence 3344444555 899999999999999 999999999985421111 1122 11223 699999999
Q ss_pred CCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 760 EDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 760 ~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
+|+|.|+|.|.|..|.....++|+|+|
T Consensus 75 ~D~G~Y~C~a~n~~g~~~~~~~v~v~V 101 (102)
T d1f97a1 75 KDNGEYTCMVSEEGGQNYGEVSIHLTV 101 (102)
T ss_dssp GGCEEEEEEEEETTSSSEEEEEEEEEE
T ss_pred cCCEEEEEEEEECCCCEEEEEEEEEEE
Confidence 999999999999999999888888875
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.3e-14 Score=122.65 Aligned_cols=95 Identities=18% Similarity=0.227 Sum_probs=75.0
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCC-CCeEEEEEECCEEccCC--CCeEEEe--e--CcEEEEEEcCCCCCC-
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGD-QTMTVEFLYNGKPIEAS--HRIRTVH--A--FGMVVLEILGTKIED- 761 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~-p~~~v~W~~~g~~l~~~--~~~~~~~--~--~~~~~L~i~~v~~~d- 761 (805)
.||.|.. +.+. .+.+|+.+.|.|.+. |. |.+.+.|++++..+... .++.+.. . +..+.|.|.++..+|
T Consensus 6 ~Pp~i~~-~~~~-~~~~G~~~~l~C~v~--~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~ 81 (115)
T d2crya1 6 GPPIISS-TQTQ-HALHGEKGQIKCFIR--STPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADF 81 (115)
T ss_dssp SSCCEEE-ECCC-CCCTTSCCCCCEEEC--CSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHH
T ss_pred cCCEEec-CCCE-EEecCCEEEEEEEee--cCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcC
Confidence 5777764 5566 789999999999998 74 56689999999888755 3443322 1 123579999999998
Q ss_pred CEEEEEEEEcCCccEEEEEEEEEEEeC
Q psy2166 762 TGVYTCRATNKWGQAEISVNLECVVWS 788 (805)
Q Consensus 762 ~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 788 (805)
+|.|+|.|.|.+|.++.+++|.|+..+
T Consensus 82 ~G~Y~C~A~N~~G~~~~~~~L~V~~~~ 108 (115)
T d2crya1 82 QTIYNCTAWNSFGSDTEIIRLKEQGSE 108 (115)
T ss_dssp HSCEEEEEECSSCEEEEEECCCCSCSS
T ss_pred CeEEEEEEEECCCeEEEEEEEEEECCC
Confidence 799999999999999999999987543
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=4.4e-13 Score=108.91 Aligned_cols=85 Identities=20% Similarity=0.198 Sum_probs=70.7
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEcc--CCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIE--ASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISV 780 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~--~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~ 780 (805)
.+.+|+.+.|.|.+. .+.|.+.|.|+|+|..+. ...+.++...++ +|.|.+++.+|+|.|+|.|.|..|..+.++
T Consensus 13 ~~~~~e~~~l~C~~~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~ 89 (101)
T d1iray1 13 VSSANEIDVRPCPLN-PNEHKGTITWYKDDSKTPVSTEQASRIHQHKE--KLWFVPAKVEDSGHYYCVVRNSSYCLRIKI 89 (101)
T ss_dssp EEETTSCEEECCCCC-GGGCSSEEEEECSSTTSBCCCCTTSSEEEETT--EEEETTCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEeCCCeEEEEeeCC-CCCCCceEEEEECCcccccccccceEEeccCC--EEEeccceecCCEEEEEEEECCCCeEEEEE
Confidence 778899999999885 367999999999986543 233444455555 799999999999999999999999999999
Q ss_pred EEEEEEeCCC
Q psy2166 781 NLECVVWSPS 790 (805)
Q Consensus 781 ~l~V~~~~~~ 790 (805)
.|+|+.+.|.
T Consensus 90 ~L~V~~~~p~ 99 (101)
T d1iray1 90 SAKFVENEPN 99 (101)
T ss_dssp EEEEECCCTT
T ss_pred EEEEEeCCCC
Confidence 9999876654
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=7.8e-14 Score=115.62 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=69.3
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCC------------CCeEEEeeCcEEEEEEcCCC
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS------------HRIRTVHAFGMVVLEILGTK 758 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~------------~~~~~~~~~~~~~L~i~~v~ 758 (805)
++.+...+.+. .+.+|+++.|.|.+. |.|.|.|.|+|++..+... .+.. ...+ .|.|.+++
T Consensus 4 ~v~V~~~~~~v-~v~~g~~v~L~C~~~--g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~L~I~~v~ 76 (105)
T d1nbqa1 4 SVTVHSSEPEV-RIPENNPVKLSCAYS--GFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVT--FLPT--GITFKSVT 76 (105)
T ss_dssp CCEEECSCSBC-CEETTCCCEEECEEE--SCSSEEEEEEEEETTEEEESEETTEECTTTTTTCE--EETT--EEECSCCC
T ss_pred ceEEECCCCeE-EEeCCCeEEEEEEeC--CCCCCeeEEEeeeeceeeeeeccceeeccccceee--ecCc--eEEEeccc
Confidence 44555555566 899999999999999 9999999999976433221 1111 1122 69999999
Q ss_pred CCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 759 IEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 759 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
.+|+|.|+|.|.|..|.....+.|+|++
T Consensus 77 ~~D~G~Y~C~a~n~~G~~~~~~~v~v~V 104 (105)
T d1nbqa1 77 REDTGTYTCMVSEEGGNSYGEVKVKLIV 104 (105)
T ss_dssp TTSCSEEEEEEEETTSSCEECCEEECCE
T ss_pred ccceeeEEEEEEECCCCEEEEEEEEEEE
Confidence 9999999999999999999888888765
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.9e-13 Score=108.94 Aligned_cols=78 Identities=15% Similarity=0.167 Sum_probs=63.9
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccEEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQAEISVNL 782 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 782 (805)
.+.+|+++.|.|.+. | |+|.+.|+++|+.+...........++ .|.|.++..+|+|.|+|.|.|.+|..+.+..|
T Consensus 8 ~~~~G~~~~l~C~~~--g-~~~~v~W~~~g~~l~~~~~~~~~~~~~--~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l 82 (92)
T d1olza1 8 FFKHGGTAELKCSQK--S-NLARVFWKFQNGVLKAESPKYGLMGRK--NLLIFNLSEGDSGVYQCLSEERVKNKTVFQVV 82 (92)
T ss_dssp EEETTSCEEECCCCS--C-TTCEEEEEESSSBCCCCSSSBCCTTTT--CEEECSCCGGGCEEEEEEEEEECSSSEEEEEE
T ss_pred eEeCCCEEEEEEEee--c-cCCceeeecCcccceeeeeeeecceee--EEEECCCCHHHCcEEEEEEEEcCCCEEEEEEE
Confidence 799999999999998 7 668999999998887654433233344 59999999999999999999999988776666
Q ss_pred EEE
Q psy2166 783 ECV 785 (805)
Q Consensus 783 ~V~ 785 (805)
.+.
T Consensus 83 ~~~ 85 (92)
T d1olza1 83 AKH 85 (92)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
|
| >d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.36 E-value=2.9e-13 Score=109.81 Aligned_cols=90 Identities=27% Similarity=0.367 Sum_probs=70.5
Q ss_pred CCCceEecCCCcccccC---CCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEE
Q psy2166 494 EAPKFITQISDVTQLKE---GQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYE 570 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~---G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 570 (805)
.+|.|...+.+.. +.+ |++++|.|.+. |.|.|.++|+|||..|..+....+...++ ..|.|..+..+|+|.|+
T Consensus 3 ~~P~f~~~P~~~~-~~~g~~~~~v~l~C~~~--g~P~p~v~W~~ng~~i~~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~ 78 (97)
T d1cs6a1 3 YGPVFEEQPAHTL-FPEGSAEEKVTLTCRAR--ANPPATYRWKMNGTELKMGPDSRYRLVAG-DLVISNPVKAKDAGSYQ 78 (97)
T ss_dssp EEEEEEECCCCEE-EETTCSCCEEEECCEEE--EESCCEEEEEETTEECCCSTTSSEEEETT-EEEEESCCHHHHCEEEE
T ss_pred cCCEEEEeCCCEE-EECccCCCeEEEEEEEE--EeCCCEEEEEEeeeeccCCCCceEEeeee-eEEEEecccccCCEEEE
Confidence 5688888877765 444 48999999999 67889999999999997655444444444 36888988899999999
Q ss_pred EEEEcCCcceE-EEEEEE
Q psy2166 571 CRATNKYGSDV-TKASLK 587 (805)
Q Consensus 571 C~a~n~~g~~~-~~~~l~ 587 (805)
|.|.|..|... ..+.|.
T Consensus 79 C~a~N~~G~~~S~~a~L~ 96 (97)
T d1cs6a1 79 CVATNARGTVVSREASLR 96 (97)
T ss_dssp EEEEETTEEEECCCEEEE
T ss_pred EEEEECCCEEEEEEEEEe
Confidence 99999999864 356653
|
| >d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Receptor-type tyrosine-protein phosphatase mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.4e-12 Score=105.46 Aligned_cols=91 Identities=12% Similarity=0.168 Sum_probs=67.5
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEE--C-CEecCCCCceEEEecCcEEEEEEcccccCCCeEEEE
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--N-GKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTC 141 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~-g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 141 (805)
+|.|+ .+. ++.|.+|++++|.|.+. |.|.|.+.|++ + +..+.......+.......+|.|.+++.+|+|.|+|
T Consensus 2 ~P~f~-~~~-~~~v~~G~~v~l~C~~~--g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 77 (96)
T d2c9aa1 2 TPHFL-RIQ-NVEVNAGQFATFQCSAI--GRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRC 77 (96)
T ss_dssp SCEEC-CCC-CEEECSSSCEEEEEEEE--SCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEE
T ss_pred cCeec-ccC-CEEEeCCCEEEEEEEEe--ecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEE
Confidence 58886 444 78999999999999999 67766655433 3 333333333344444456689999999999999999
Q ss_pred EEEeCCeeEEEE-EEEEEe
Q psy2166 142 RAWNLAGETFTS-TTIYCS 159 (805)
Q Consensus 142 ~a~n~~g~~~~~-~~l~V~ 159 (805)
.|.|..|...+. +.|.|+
T Consensus 78 ~a~N~~G~~~s~~a~L~Vk 96 (96)
T d2c9aa1 78 MIRTEGGVGISNYAELVVK 96 (96)
T ss_dssp EEEETTEEEEEEEEEEEEC
T ss_pred EEEeCCCeEEEEEEEEEEC
Confidence 999999987554 678773
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=7e-13 Score=108.13 Aligned_cols=90 Identities=13% Similarity=0.110 Sum_probs=72.4
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCe--EEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM--TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTC 767 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~--~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 767 (805)
.||.+...+... .+.+|+.++|.|.+. .++|.| .|+|+++++.+..... .......+|.|..++.+|+|.|+|
T Consensus 3 ~P~~v~i~p~~~-~v~~G~~~~L~C~v~-g~~P~p~~~v~W~~~~~~l~~~~~---~~~~~~s~l~i~~~~~dd~g~ytC 77 (103)
T d1iama1 3 TPERVELAPLPS-WQPVGKQLTLRCQVE-GGAPRAQLTVVLLRGEKELKREPA---VGEPAEVTTTVLVRRDHHGAQFSC 77 (103)
T ss_dssp CCSEEEECCCCS-EECTTSEEEEEEEEE-CCBCGGGEEEEEEETTEEEEEEEC---CTTTEEEEEEEECCSSCSSCEEEE
T ss_pred CCCceEEeCCCc-eEeCCCEEEEEEEec-CCCCCCceEEEEcccccccccccc---ccccceEEEEEeeehhHCCCEEEE
Confidence 477888888877 899999999999998 235655 6889999998865422 222345689999999999999999
Q ss_pred EEEcCCccEEEEEEEEE
Q psy2166 768 RATNKWGQAEISVNLEC 784 (805)
Q Consensus 768 ~a~N~~G~~~~~~~l~V 784 (805)
+|.|.+|....+..+.|
T Consensus 78 ~A~n~~g~~~~~~~~~~ 94 (103)
T d1iama1 78 RTELDLRPQGLELFENT 94 (103)
T ss_dssp EEEEECGGGTSCEEEEE
T ss_pred EEEeCCCCccCeEeeeE
Confidence 99999998877777766
|
| >d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.34 E-value=9.3e-13 Score=106.17 Aligned_cols=83 Identities=25% Similarity=0.290 Sum_probs=66.4
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCCc-eEEEEECCEecCCCCc-eEEEecCcEEEEEEcccccCCCeEEEEE
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNL-KIEWIFNGKPLELGSR-FKTTADFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~k~g~~i~~~~~-~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
.|.|...+ .++.+.+|+.++|.|.+. |.|.+ .|.|++||..+..... +....++ .+|.|.+++.+|+|.|+|.
T Consensus 2 ~P~i~~~p-~~~~v~~g~~~~l~C~~~--g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~--~~L~i~~v~~~D~G~Y~C~ 76 (94)
T d1biha1 2 YPVLKDQP-AEVLFRENNPTVLECIIE--GNDQGVKYSWKKDGKSYNWQEHNAALRKDE--GSLVFLRPQASDEGHYQCF 76 (94)
T ss_dssp CCEECCCC-SEEEEETTSCEEECCCEE--SCCSSCEEEEEESSSBCCTTTTTEEECTTS--CCEEESSCCGGGCEEEEEE
T ss_pred CCEEEecC-CcEEEeCCCeEEEEEEec--CCCCeeEEEEEeeeeeeeeecceeeecccc--eEEEEeccChhcCeEEEEE
Confidence 46666554 478999999999999999 57655 7999999999976554 3333333 3799999999999999999
Q ss_pred EEeCCeeEEE
Q psy2166 143 AWNLAGETFT 152 (805)
Q Consensus 143 a~n~~g~~~~ 152 (805)
|.|..|...+
T Consensus 77 a~N~~G~~~s 86 (94)
T d1biha1 77 AETPAGVASS 86 (94)
T ss_dssp EEETTEEEEC
T ss_pred EEeCCCEEEE
Confidence 9999997654
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=9.2e-13 Score=106.87 Aligned_cols=73 Identities=12% Similarity=0.147 Sum_probs=61.0
Q ss_pred ccCCCCeEEEEE------EEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcCCccE
Q psy2166 703 NLSEGEIAHFEA------SLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNKWGQA 776 (805)
Q Consensus 703 ~v~~G~~~~l~C------~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~ 776 (805)
.+..|....|.| .+. |+|.|.|.|+|||++|..+.+..... ++ .|.|.++..+|+|.|+|.|.|..|..
T Consensus 10 ~~~~g~~~~l~Cp~~~~~~~~--~~p~P~i~W~kdg~~l~~~~~~~~~~-~~--~L~I~~v~~~D~G~Y~C~a~n~~~g~ 84 (103)
T d1iray2 10 KLPVAGDGGLVCPYMEFFKNE--NNELPKLQWYKDCKPLLLDNIHFSGV-KD--RLIVMNVAEKHRGNYTCHASYTYLGK 84 (103)
T ss_dssp EEESSSCEEEECTTGGGGCBT--TTBCCCCEEEETTEECCCCSSSEEEE-TT--EEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred EEecCCCEEEEcCCccccccC--CCCCCEEEEEECCccccCCCcEEEec-CC--EEEEcccccccCcEEEEEEEECcCCE
Confidence 688999999999 566 99999999999999998776554333 44 59999999999999999999999865
Q ss_pred EEEE
Q psy2166 777 EISV 780 (805)
Q Consensus 777 ~~~~ 780 (805)
..++
T Consensus 85 ~~~v 88 (103)
T d1iray2 85 QYPI 88 (103)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4433
|
| >d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Neural cell adhesion molecule (NCAM) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.33 E-value=5.4e-12 Score=102.12 Aligned_cols=87 Identities=25% Similarity=0.445 Sum_probs=67.0
Q ss_pred ecCCCcccccCCCeEEEEEEEeeCCCC-CcEEEEEE-CCEEcc-CCCceEEE-eeCCEEEEEEccCCCCCCEEEEEEEEc
Q psy2166 500 TQISDVTQLKEGQSAHFEARLTPVTDP-DLVVEWFY-NGKKLP-HGHRYRTF-HDFGIVILDILYCYEENSGVYECRATN 575 (805)
Q Consensus 500 ~~~~~~~~v~~G~~v~L~C~v~~~g~p-~~~v~W~~-~g~~l~-~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~n 575 (805)
+.+... .+.+|+++.|.|.+. |.| .+.|+|+| +|..+. .+.++.+. .......|.|.+++.+|+|.|+|.|.|
T Consensus 5 i~P~~~-~v~~G~~~~l~C~v~--g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N 81 (97)
T d1epfa1 5 IVPSQG-EISVGESKFFLCQVA--GDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTA 81 (97)
T ss_dssp EESSSE-EEETTCCEEEEEEEC--CCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred EECCCE-EEccCCcEEEEEEEE--eccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEe
Confidence 334443 388999999999998 555 47999998 566654 34566553 456678899999999999999999999
Q ss_pred CCcce-EEEEEEEEe
Q psy2166 576 KYGSD-VTKASLKCV 589 (805)
Q Consensus 576 ~~g~~-~~~~~l~V~ 589 (805)
..|.. +.++.|.|.
T Consensus 82 ~~G~~~~~tv~l~V~ 96 (97)
T d1epfa1 82 EDGTQSEATVNVKIF 96 (97)
T ss_dssp TTTEEEEEEEEEEEE
T ss_pred CCCcEEEEEEEEEEE
Confidence 99975 456777664
|
| >d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Interleukin-6 receptor alpha chain, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=3.8e-13 Score=107.16 Aligned_cols=88 Identities=14% Similarity=0.095 Sum_probs=66.6
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEE
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECR 572 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 572 (805)
..+|.|........ +.+|++++|.|.+.+ +.|.++|+|+|+|..+....+... ..++ .|.|.+++.+|+|.|+|.
T Consensus 4 ~~~P~~~~~~~~v~-~~~G~~v~L~C~~~g-~~~~~~i~W~k~~~~l~~~~~~~~-~~~~--~L~I~~v~~~D~G~Y~C~ 78 (93)
T d1n26a1 4 RRCPAQEVARGVLT-SLPGDSVTLTCPGVE-PEDNATVHWVLRKPAAGSHPSRWA-GMGR--RLLLRSVQLHDSGNYSCY 78 (93)
T ss_dssp SCCCCCCCCTTEEE-ECTTCCEEEECTTSC-TTCCSEEEEEEECSSSSCCCEEEE-EESS--EEEECSCCGGGCEEEEEE
T ss_pred CCCCcEEeCCCCEE-EeCCCcEEEEEEeec-CCCCceEEEEEccccccceeeEEe-cCCC--EEEECCCChhcCEEEEEE
Confidence 45677777665544 889999999999984 344579999999999977665543 3344 599999999999999999
Q ss_pred EEcCCcceEEEEEEEE
Q psy2166 573 ATNKYGSDVTKASLKC 588 (805)
Q Consensus 573 a~n~~g~~~~~~~l~V 588 (805)
|.|..+. ++.|.|
T Consensus 79 a~n~~~~---t~~l~V 91 (93)
T d1n26a1 79 RAGRPAG---TVHLLV 91 (93)
T ss_dssp SSSSCSC---EEEEEE
T ss_pred ECCcccc---EEEEEE
Confidence 9875543 334554
|
| >d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=3.2e-12 Score=105.92 Aligned_cols=91 Identities=16% Similarity=0.232 Sum_probs=72.5
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEe----e--------CCEEEEEEccCC
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFH----D--------FGIVILDILYCY 562 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~----~--------~~~~~L~i~~v~ 562 (805)
+|.|..+......+..|+++.|.|.+. |.|.|.+.|++||..+.......... . ...+.|.|.+++
T Consensus 1 kP~i~~p~~~~i~v~~G~~v~l~C~v~--g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~ 78 (107)
T d1iray3 1 RPVIVSPANETMEVDLGSQIQLICNVT--GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIE 78 (107)
T ss_dssp CCEEEECCSEEEECCTTCCEEEEEEEE--ECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCC
T ss_pred CCCEEEECCCEEEEeCCCEEEEEEEec--cCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecc
Confidence 367777666556688999999999999 67889999999999987554332211 0 114579999999
Q ss_pred CCCCE-EEEEEEEcCCcceEEEEEEE
Q psy2166 563 EENSG-VYECRATNKYGSDVTKASLK 587 (805)
Q Consensus 563 ~~d~G-~Y~C~a~n~~g~~~~~~~l~ 587 (805)
.+|.| .|+|.|.|..|..+..+.|+
T Consensus 79 ~~D~g~~Y~C~A~N~~G~~~~~i~L~ 104 (107)
T d1iray3 79 SRFYKHPFTCFAKNTHGIDAAYIQLI 104 (107)
T ss_dssp GGGGSSCEEEEEECSSCEEEEEEEEE
T ss_pred hHHCCcEEEEEEEeCCCeEEEEEEEE
Confidence 99999 59999999999999888876
|
| >d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Myosin-binding protein C, slow-type species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=9.2e-13 Score=110.42 Aligned_cols=92 Identities=13% Similarity=0.110 Sum_probs=71.2
Q ss_pred EEecCCCCceecCCCcEEEEEEEecCCCC---CceEEEEECCEecC---CCCceEEEe------cCcEEEEEEcccccCC
Q psy2166 68 FIVPLKPEFKLGEAQPLHLEAQVEPKNDP---NLKIEWIFNGKPLE---LGSRFKTTA------DFGFVTLDLTEVYDRD 135 (805)
Q Consensus 68 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~p---~~~v~W~k~g~~i~---~~~~~~~~~------~~~~~~L~I~~~~~~D 135 (805)
|+..+ .++.+.+|++++|.|.+. |.| .|.|.|+|++.... ...++.+.. ....++|.|.+++.+|
T Consensus 3 F~~~P-~~~~v~~G~~v~l~C~v~--g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 79 (113)
T d2dava1 3 FIEKP-QGGTVKVGEDITFIAKVK--AEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNF 79 (113)
T ss_dssp CCSCC-CCCEEETTCCEEEEEEEE--CCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTS
T ss_pred EeECC-ceEEEeCCCEEEEEEEEc--cCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHH
Confidence 44444 478999999999999999 566 57999999875432 233333322 2245689999999999
Q ss_pred CeEEEEEEEeCCeeEEEEEEEEEeccc
Q psy2166 136 QGIYTCRAWNLAGETFTSTTIYCSTKE 162 (805)
Q Consensus 136 ~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 162 (805)
+|.|+|.|.|..|.....+.|.|..++
T Consensus 80 ~G~Y~C~a~N~~G~~~~~~~L~V~~~~ 106 (113)
T d2dava1 80 AGNYRCEVTYKDKFDSCSFDLEVHEST 106 (113)
T ss_dssp CEEEEEEEECSSCEEEECCEEEEECCC
T ss_pred CeEEEEEEEeCCCEEEEEEEEEEEcCC
Confidence 999999999999999999999997654
|
| >d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: High affinity nerve growth factor receptor TrkA, different domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=4e-12 Score=104.77 Aligned_cols=89 Identities=24% Similarity=0.251 Sum_probs=71.6
Q ss_pred CCCCceecCCCcEEEEE---EEecCCCCCceEEEEECCEecCCCCceEEEec-------CcEEEEEEcccccCCCeEEEE
Q psy2166 72 LKPEFKLGEAQPLHLEA---QVEPKNDPNLKIEWIFNGKPLELGSRFKTTAD-------FGFVTLDLTEVYDRDQGIYTC 141 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C---~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~-------~~~~~L~I~~~~~~D~G~Y~C 141 (805)
++..+.+.+|..+.+.| .+. |.|.|.|+|+|||..|..+.++..... .....|.|.++..+|+|.|+|
T Consensus 3 ~p~~~~~~~g~~~~~~ci~~~v~--G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C 80 (107)
T d1he7a_ 3 MPASVQLHTAVEMHHWCIPFSVD--GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTL 80 (107)
T ss_dssp CCCCCCCCCCCCCCEEEEEEEEC--CSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEE
T ss_pred CCCEeEECCCeEEEEEEEEEEEE--EecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEE
Confidence 34456777777666555 777 799999999999999988776554322 134679999999999999999
Q ss_pred EEEeCCeeEEEEEEEEEeccc
Q psy2166 142 RAWNLAGETFTSTTIYCSTKE 162 (805)
Q Consensus 142 ~a~n~~g~~~~~~~l~V~~~~ 162 (805)
.|.|..|.....+.|.|..+|
T Consensus 81 ~A~N~~G~~~~~i~v~v~~~P 101 (107)
T d1he7a_ 81 LAANPFGQASASIMAAFMDNP 101 (107)
T ss_dssp EEEETTEEEEEEEEECCCSCT
T ss_pred EEEeCCCEEEEEEEEEEEcCC
Confidence 999999999999999887765
|
| >d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.33 E-value=1.6e-12 Score=102.78 Aligned_cols=80 Identities=19% Similarity=0.148 Sum_probs=61.6
Q ss_pred ecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 500 TQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 500 ~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
+.++... +.+|++++|.|.+.+ +.|.+.+.|+|||+.+... ..+ ..|.|.+++.+|+|.|+|.|.|..|.
T Consensus 7 lq~p~~~-v~eG~~v~L~C~~~~-~~p~~~~~W~kng~~~~~~------~~~--~~l~I~~v~~~dsG~Y~C~a~n~~~~ 76 (89)
T d1fnla2 7 LQAPRWV-FKEEDPIHLRCHSWK-NTALHKVTYLQNGKDRKYF------HHN--SDFHIPKATLKDSGSYFCRGLVGSKN 76 (89)
T ss_dssp EECSCSE-EETTCCEEEEEEECT-TCCCEEEEEEETTEEEEEE------EEC--CCEEESSCCGGGCEEEEEEEEETTEE
T ss_pred EECCCCe-EccCCeEEEEEEecC-CCCCcEEEEEEccccccee------ccc--cccEECccceeccceEEEEEEeCCCC
Confidence 3334433 789999999999975 6778899999999877421 112 24899999999999999999999887
Q ss_pred eE-EEEEEEEe
Q psy2166 580 DV-TKASLKCV 589 (805)
Q Consensus 580 ~~-~~~~l~V~ 589 (805)
.. ..+.|+|.
T Consensus 77 ~~S~~v~itV~ 87 (89)
T d1fnla2 77 VSSETVNITIT 87 (89)
T ss_dssp EECCCEEEEEE
T ss_pred eEEeeEEEEEE
Confidence 54 45667665
|
| >d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=1.8e-12 Score=102.61 Aligned_cols=76 Identities=16% Similarity=0.111 Sum_probs=62.3
Q ss_pred ccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCCcce-EEEEEE
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKYGSD-VTKASL 586 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l 586 (805)
+.+|+.++|.|.+.+ +.|.+++.|+|||+.+..... ...|.|.+++.+|+|.|+|.|.|..|.. +..+.|
T Consensus 12 V~eG~~v~L~C~~~~-~~~~~~~~w~k~g~~~~~~~~--------~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i 82 (89)
T d1f2qa2 12 VMEGQPLFLRCHGWR-NWDVYKVIYYKDGEALKYWYE--------NHNISITNATVEDSGTYYCTGKVWQLDYESEPLNI 82 (89)
T ss_dssp EETTSCEEEEEEEGG-GCCEEEEEEEETTEECCSCCC--------SSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred EeCCCEEEEEEEecC-CCCCeEEEEEEeeeccccccc--------cceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEE
Confidence 889999999999975 567789999999998865321 1259999999999999999999988765 355778
Q ss_pred EEeeee
Q psy2166 587 KCVSKT 592 (805)
Q Consensus 587 ~V~~~~ 592 (805)
+|...|
T Consensus 83 ~V~~~P 88 (89)
T d1f2qa2 83 TVIKAP 88 (89)
T ss_dssp EEECSC
T ss_pred EEEeCC
Confidence 887655
|
| >d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: B- and T-lymphocyte attenuator CD272 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=2.3e-12 Score=105.90 Aligned_cols=91 Identities=21% Similarity=0.319 Sum_probs=68.1
Q ss_pred CeEEecCCCCceecCCCcEEEEEEEecCCCC-CceEEEEECCEecCCC--C-ceEEEec--CcEEEEEEcccccCCCeEE
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDP-NLKIEWIFNGKPLELG--S-RFKTTAD--FGFVTLDLTEVYDRDQGIY 139 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p-~~~v~W~k~g~~i~~~--~-~~~~~~~--~~~~~L~I~~~~~~D~G~Y 139 (805)
|.|+..+ ....+.+|+++.|.|.+. |.| .|.|+|+|+++.+... . +.....+ .....|.|.+++.+|+|.|
T Consensus 4 ~~fi~~~-~~~~v~~G~~v~L~C~v~--g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 80 (104)
T d2aw2a1 4 QLYIKRQ-SEHSILAGDPFELECPVK--YCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSY 80 (104)
T ss_dssp EECCCTT-EEEEEETTSCEEEEEEEE--CSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEE
T ss_pred cEEEecC-CeEEEeCCCeEEEEEEEE--eeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeE
Confidence 4455433 367899999999999999 566 5899999988765421 1 2222222 2456799999999999999
Q ss_pred EEEEEeCCeeEEE-EEEEEEe
Q psy2166 140 TCRAWNLAGETFT-STTIYCS 159 (805)
Q Consensus 140 ~C~a~n~~g~~~~-~~~l~V~ 159 (805)
+|.|.|..|...+ ...|.|.
T Consensus 81 ~C~A~N~~G~~~s~~~~l~V~ 101 (104)
T d2aw2a1 81 RCSANFQSNLIESHSTTLYVT 101 (104)
T ss_dssp EEEEEETTEEEECCCEEEEEE
T ss_pred EEEEEcCCCeEEEEEEEEEEE
Confidence 9999999998654 6777775
|
| >d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.30 E-value=1.1e-12 Score=109.47 Aligned_cols=81 Identities=21% Similarity=0.236 Sum_probs=61.6
Q ss_pred ccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEE--------EeeCCEEEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT--------FHDFGIVILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~--------~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
+.+|++++|.|.+.. |.|.+.|+|+|+|..+........ ........|.|.+++.+|+|.|+|.|.|..|.
T Consensus 14 v~~G~~v~L~C~~~~-g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~ 92 (110)
T d1f97a2 14 VTIGNRAVLTCSEHD-GSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT 92 (110)
T ss_dssp EETTSCEEEEEECSC-CBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSC
T ss_pred EecCCeEEEEEEeec-CCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCc
Confidence 789999999999864 789999999999998865432221 12223346999999999999999999999998
Q ss_pred eEEEEEEEEe
Q psy2166 580 DVTKASLKCV 589 (805)
Q Consensus 580 ~~~~~~l~V~ 589 (805)
...+..+.+.
T Consensus 93 ~~~s~~v~l~ 102 (110)
T d1f97a2 93 AMRSEAAHMD 102 (110)
T ss_dssp CEECCCEEEE
T ss_pred EEEEEEEEEE
Confidence 8775554444
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.30 E-value=2.3e-12 Score=100.78 Aligned_cols=80 Identities=16% Similarity=0.150 Sum_probs=65.5
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeE-EEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMT-VEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~-v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
.+|.|...|... ++.+|++++|.|.+. |.|.+. +.|+++|..+..+.. .|.|.+++.+|+|.|+|.
T Consensus 4 Pkpvi~~~P~~~-~v~~G~~vtL~C~~~--~~~~~~~~~~~~~~~~~~~~~~----------~l~i~~~~~~d~G~Y~C~ 70 (84)
T d1fnla1 4 PKAVVFLEPQWY-SVLEKDSVTLKCQGA--YSPEDNSTQWFHNESLISSQAS----------SYFIDAATVNDSGEYRCQ 70 (84)
T ss_dssp CCCEEEEESCCS-EEETTCCEEEEEECC--CBTTBCCCEEEETTEEEESSCS----------EEEESSCCGGGCEEEEEE
T ss_pred CCCEEEECCCCc-EEeCCCeEEEEEEec--cCCCCeEEEEeeeceeeeecce----------eeEecCCcccCCEEEEEE
Confidence 578899999888 999999999999998 888875 667899987765432 699999999999999999
Q ss_pred EEcCCccEEEEEEEEE
Q psy2166 769 ATNKWGQAEISVNLEC 784 (805)
Q Consensus 769 a~N~~G~~~~~~~l~V 784 (805)
|.|..+++ .++|+|
T Consensus 71 a~~s~~S~--~v~L~V 84 (84)
T d1fnla1 71 TNLSTLSD--PVQLEV 84 (84)
T ss_dssp CSSSCCCC--CEEEEE
T ss_pred ccCCCccc--cEEEEC
Confidence 99976543 445544
|
| >d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Junction adhesion molecule, JAM, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=1.6e-13 Score=113.31 Aligned_cols=83 Identities=19% Similarity=0.298 Sum_probs=65.3
Q ss_pred cccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEe-------eCCEEEEEEccCCCCCCEEEEEEEEcCCcc
Q psy2166 507 QLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFH-------DFGIVILDILYCYEENSGVYECRATNKYGS 579 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~-------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~ 579 (805)
.+.+|+.++|.|.+.. |.|.+.++|+|+|+.+....++.... ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus 13 ~v~~G~~v~l~C~~~~-g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~ 91 (104)
T d1nbqa2 13 SATIGNRAVLTCSEQD-GSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGT 91 (104)
T ss_dssp EEETTSCEEECCCCCS-CBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSC
T ss_pred EEecCCcEEEEEEeec-CCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCc
Confidence 3789999999999853 78999999999999986554332211 112346999999999999999999999999
Q ss_pred eEEEEEEEEee
Q psy2166 580 DVTKASLKCVS 590 (805)
Q Consensus 580 ~~~~~~l~V~~ 590 (805)
...++.|.|.+
T Consensus 92 ~~~s~~v~v~v 102 (104)
T d1nbqa2 92 PMTSNAVRMEA 102 (104)
T ss_dssp CEECCCBCCEE
T ss_pred eEEEEEEEEEE
Confidence 98877666543
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.28 E-value=1.7e-12 Score=101.89 Aligned_cols=80 Identities=16% Similarity=0.230 Sum_probs=66.4
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCe-EEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM-TVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~-~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
+|.|...|... .+.+|+.++|.|.+. ++|.+ .+.|++||+.+..... .|.|.+++.+|+|.|+|.|
T Consensus 4 kp~i~~~P~~~-~v~~G~~v~L~C~~~--~~~~~~~~~w~~~g~~~~~~~~----------~l~i~~v~~~dsG~Y~C~a 70 (85)
T d2fcba1 4 KAVLKLEPQWI-NVLQEDSVTLTCRGT--HSPESDSIQWFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQT 70 (85)
T ss_dssp BCEEEEESCCS-EEETTCEEEEEEECS--SCCCTTCCEEEETTEECTTCCS----------SEEEEECCGGGCEEEEEEC
T ss_pred CCEEEECCCCe-EEcCCCeEEEEEEEe--eccceeEEEeeccccccccccc----------ceEEeeccccCCcEEEEEC
Confidence 57888888888 899999999999998 87766 6899999999876533 5889999999999999999
Q ss_pred EcCCccEEEEEEEEEE
Q psy2166 770 TNKWGQAEISVNLECV 785 (805)
Q Consensus 770 ~N~~G~~~~~~~l~V~ 785 (805)
.|..+++ .+.|+|.
T Consensus 71 ~ns~~S~--~v~l~V~ 84 (85)
T d2fcba1 71 GQTSLSD--PVHLTVL 84 (85)
T ss_dssp TTSBCCC--CEEEEEE
T ss_pred CCCcccc--cEEEEEE
Confidence 9987654 4566653
|
| >d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Axonin-1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=99.28 E-value=8.2e-13 Score=108.61 Aligned_cols=85 Identities=21% Similarity=0.280 Sum_probs=65.2
Q ss_pred CeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCC--CCceEEEecCcEEEEEEcccccCCCeEEEEEE
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL--GSRFKTTADFGFVTLDLTEVYDRDQGIYTCRA 143 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~--~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 143 (805)
+.|...+...+.|.+|+.++|.|.+.. +.|.+.|+|+|||..+.. ..+......++ +|.|.+++.+|+|.|+|.|
T Consensus 4 ~~F~~~~~~~v~v~eG~~~~l~C~~~~-~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a 80 (105)
T d1cs6a2 4 QEFSAEERDPVKITEGWGVMFTCSPPP-HYPALSYRWLLNEFPNFIPADGRRFVSQTTG--NLYIAKTEASDLGNYSCFA 80 (105)
T ss_dssp CCCCSSCCCCEEEETTSCEEECCCCCS-EESCCEEEEEESSTTCBCCCCSSEEECTTTC--CEEESSCCGGGCEEEEEEE
T ss_pred CcccCCCCCCEEEeCCCeEEEEEEccC-CCCCCEEEEEEeeccccccccceeeeecCCC--EEeecccccccCcEEEEEE
Confidence 345556666789999999999999732 578899999999977653 33433333333 7999999999999999999
Q ss_pred EeCCeeEEEE
Q psy2166 144 WNLAGETFTS 153 (805)
Q Consensus 144 ~n~~g~~~~~ 153 (805)
.|..|.....
T Consensus 81 ~N~~g~~~~~ 90 (105)
T d1cs6a2 81 TSHIDFITKS 90 (105)
T ss_dssp EEEETTEEEE
T ss_pred EECCCCEEEE
Confidence 9987765544
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.5e-12 Score=101.28 Aligned_cols=80 Identities=21% Similarity=0.309 Sum_probs=62.9
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeE-EEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMT-VEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~-v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
+|.|...|... .+.+|+.++|.|.+. |.|.+. +.|+++|..+..... .|.|.+++.+|+|.|+|.|
T Consensus 1 KP~It~~P~~~-~v~~G~~v~L~C~~~--~~~~~~~~~~~~~~~~~~~~~~----------~l~i~~v~~~d~G~Y~C~a 67 (82)
T d1f2qa1 1 KPKVSLNPPWN-RIFKGENVTLTCNGN--NFFEVSSTKWFHNGSLSEETNS----------SLNIVNAKFEDSGEYKCQH 67 (82)
T ss_dssp CCCCEEESSCS-EEETTCCEEEECCTT--CC----CCEEEETTEECSCCSS----------EEEECSCCGGGCEEEEEEC
T ss_pred CCEEEEcCCCe-EEeCCCeEEEEEEEe--eeeeecceeeeeeeeeeecccc----------eeEECCCChhhCCcEEEEe
Confidence 47788888777 899999999999998 888874 567899998865432 5999999999999999999
Q ss_pred EcCCccEEEEEEEEEE
Q psy2166 770 TNKWGQAEISVNLECV 785 (805)
Q Consensus 770 ~N~~G~~~~~~~l~V~ 785 (805)
.|..+++ .++|+|.
T Consensus 68 ~~s~~S~--~v~l~V~ 81 (82)
T d1f2qa1 68 QQVNESE--PVYLEVF 81 (82)
T ss_dssp TTSSCCC--CEEEEEE
T ss_pred cCCCCcc--cEEEEEE
Confidence 9976644 5667764
|
| >d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-1 (ICAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=6.5e-12 Score=102.26 Aligned_cols=95 Identities=9% Similarity=0.064 Sum_probs=73.1
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCc--EEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEE
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDL--VVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYEC 571 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~--~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 571 (805)
.||++.+.+.... +.+|+.++|+|.+.+ +.|.+ .++|+++++.|..... ......+.|.|..+..+|+|.|+|
T Consensus 3 ~P~~v~i~p~~~~-v~~G~~~~L~C~v~g-~~P~p~~~v~W~~~~~~l~~~~~---~~~~~~s~l~i~~~~~dd~g~ytC 77 (103)
T d1iama1 3 TPERVELAPLPSW-QPVGKQLTLRCQVEG-GAPRAQLTVVLLRGEKELKREPA---VGEPAEVTTTVLVRRDHHGAQFSC 77 (103)
T ss_dssp CCSEEEECCCCSE-ECTTSEEEEEEEEEC-CBCGGGEEEEEEETTEEEEEEEC---CTTTEEEEEEEECCSSCSSCEEEE
T ss_pred CCCceEEeCCCce-EeCCCEEEEEEEecC-CCCCCceEEEEcccccccccccc---ccccceEEEEEeeehhHCCCEEEE
Confidence 4677777766654 889999999999996 45544 7899999999854211 122345679999999999999999
Q ss_pred EEEcCCcceEEEEEEEEeeeee
Q psy2166 572 RATNKYGSDVTKASLKCVSKTN 593 (805)
Q Consensus 572 ~a~n~~g~~~~~~~l~V~~~~~ 593 (805)
+|.|..|.......+.+..+..
T Consensus 78 ~A~n~~g~~~~~~~~~~s~p~~ 99 (103)
T d1iama1 78 RTELDLRPQGLELFENTSAPYQ 99 (103)
T ss_dssp EEEEECGGGTSCEEEEECCCEE
T ss_pred EEEeCCCCccCeEeeeEcCCCE
Confidence 9999999987777777766554
|
| >d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Kin of IRRE-like protein 3, KIRREL3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=6.4e-13 Score=111.99 Aligned_cols=100 Identities=22% Similarity=0.309 Sum_probs=76.7
Q ss_pred CCCCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCC--CceEEEee----CCEEEEEEccCCC
Q psy2166 490 APVAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG--HRYRTFHD----FGIVILDILYCYE 563 (805)
Q Consensus 490 ~~~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~--~~~~~~~~----~~~~~L~i~~v~~ 563 (805)
+.+..||.|.. +... .+.+|+.+.|.|.+.+ ..|.+.+.|+++++.+..+ .++.+... +..+.|.|.++..
T Consensus 2 L~V~~Pp~i~~-~~~~-~~~~G~~~~l~C~v~~-~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~ 78 (115)
T d2crya1 2 LTVNGPPIISS-TQTQ-HALHGEKGQIKCFIRS-TPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVR 78 (115)
T ss_dssp CCCCSSCCEEE-ECCC-CCCTTSCCCCCEEECC-SSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCH
T ss_pred eEEecCCEEec-CCCE-EEecCCEEEEEEEeec-CCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccch
Confidence 34567887754 4444 3889999999999994 3677799999999988653 34433221 2245799999999
Q ss_pred CC-CEEEEEEEEcCCcceEEEEEEEEeeee
Q psy2166 564 EN-SGVYECRATNKYGSDVTKASLKCVSKT 592 (805)
Q Consensus 564 ~d-~G~Y~C~a~n~~g~~~~~~~l~V~~~~ 592 (805)
+| +|.|+|.|.|..|.++..+.|.|...+
T Consensus 79 ~D~~G~Y~C~A~N~~G~~~~~~~L~V~~~~ 108 (115)
T d2crya1 79 ADFQTIYNCTAWNSFGSDTEIIRLKEQGSE 108 (115)
T ss_dssp HHHHSCEEEEEECSSCEEEEEECCCCSCSS
T ss_pred hcCCeEEEEEEEECCCeEEEEEEEEEECCC
Confidence 99 799999999999999999999887543
|
| >d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=1.1e-11 Score=102.37 Aligned_cols=84 Identities=19% Similarity=0.343 Sum_probs=65.0
Q ss_pred ecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCC------------CceEEEecCcEEEEEEcccccCCCe
Q psy2166 70 VPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG------------SRFKTTADFGFVTLDLTEVYDRDQG 137 (805)
Q Consensus 70 ~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~------------~~~~~~~~~~~~~L~I~~~~~~D~G 137 (805)
...++.+.+.+|++++|.|.+. |.|.|.|.|+|++..+... .+.... + .+|.|.+++.+|+|
T Consensus 8 ~~~~~~v~v~~g~~v~L~C~~~--g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~L~I~~v~~~D~G 81 (105)
T d1nbqa1 8 HSSEPEVRIPENNPVKLSCAYS--GFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFL--P--TGITFKSVTREDTG 81 (105)
T ss_dssp ECSCSBCCEETTCCCEEECEEE--SCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEE--T--TEEECSCCCTTSCS
T ss_pred ECCCCeEEEeCCCeEEEEEEeC--CCCCCeeEEEeeeeceeeeeeccceeeccccceeeec--C--ceEEEeccccccee
Confidence 3445578999999999999999 7899999999976544321 122221 1 27999999999999
Q ss_pred EEEEEEEeCCeeEEEEEEEEEe
Q psy2166 138 IYTCRAWNLAGETFTSTTIYCS 159 (805)
Q Consensus 138 ~Y~C~a~n~~g~~~~~~~l~V~ 159 (805)
.|+|.|.|..|.......|.|.
T Consensus 82 ~Y~C~a~n~~G~~~~~~~v~v~ 103 (105)
T d1nbqa1 82 TYTCMVSEEGGNSYGEVKVKLI 103 (105)
T ss_dssp EEEEEEEETTSSCEECCEEECC
T ss_pred eEEEEEEECCCCEEEEEEEEEE
Confidence 9999999999998877666654
|
| >d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=2.3e-11 Score=98.53 Aligned_cols=84 Identities=12% Similarity=0.067 Sum_probs=68.2
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCC--CceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG--SRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFT 152 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~ 152 (805)
.+...+|+.+.|.|.+.. +.|.+.|.|+|+|..+... .+..+...+. +|.|.+++.+|+|.|+|.|.|..|....
T Consensus 11 ~~~~~~~e~~~l~C~~~~-~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~g~~~~ 87 (101)
T d1iray1 11 ILVSSANEIDVRPCPLNP-NEHKGTITWYKDDSKTPVSTEQASRIHQHKE--KLWFVPAKVEDSGHYYCVVRNSSYCLRI 87 (101)
T ss_dssp CEEEETTSCEEECCCCCG-GGCSSEEEEECSSTTSBCCCCTTSSEEEETT--EEEETTCCGGGCEEEEEEEEETTEEEEE
T ss_pred EEEEeCCCeEEEEeeCCC-CCCCceEEEEECCcccccccccceEEeccCC--EEEeccceecCCEEEEEEEECCCCeEEE
Confidence 467788999999998863 5788999999998665422 2333443333 7999999999999999999999999999
Q ss_pred EEEEEEecc
Q psy2166 153 STTIYCSTK 161 (805)
Q Consensus 153 ~~~l~V~~~ 161 (805)
++.|.|..+
T Consensus 88 ~~~L~V~~~ 96 (101)
T d1iray1 88 KISAKFVEN 96 (101)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEEeC
Confidence 999999764
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=3.9e-12 Score=104.39 Aligned_cols=86 Identities=7% Similarity=0.052 Sum_probs=63.0
Q ss_pred cCCcccccCCCCeEEEEEEEeecCC--CCeEEEEEECCEEccCCCCeEEE--eeCcEEEEEEcCCCCCCCEEEEEEEEcC
Q psy2166 697 EFQHLSNLSEGEIAHFEASLIPVGD--QTMTVEFLYNGKPIEASHRIRTV--HAFGMVVLEILGTKIEDTGVYTCRATNK 772 (805)
Q Consensus 697 ~~~~~~~v~~G~~~~l~C~~~~~g~--p~~~v~W~~~g~~l~~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a~N~ 772 (805)
.+... .+.+|+.++|.|.+.+ |+ |.+.|+|+|+|+++..+....+. .....+.|.|...+.+|+|.|+|+|.|.
T Consensus 8 ~~~p~-~v~~G~~v~l~C~v~g-~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~ 85 (106)
T d1zxqa1 8 TLQPT-LVAVGKSFTIECRVPT-VEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLD 85 (106)
T ss_dssp EEESS-EECTTSEEEEEEEECS-CBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred cCCCC-EEeCCCEEEEEEEEeC-cccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEec
Confidence 34444 7899999999999982 34 45689999999988754332221 1223467888888899999999999999
Q ss_pred CccEEEEEEEEE
Q psy2166 773 WGQAEISVNLEC 784 (805)
Q Consensus 773 ~G~~~~~~~l~V 784 (805)
+|.......+.+
T Consensus 86 ~~~~~~~~~~~~ 97 (106)
T d1zxqa1 86 LMSRGGNIFHKH 97 (106)
T ss_dssp CGGGTCCEEEEE
T ss_pred CCCCCCeeEecc
Confidence 987655555554
|
| >d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Junction adhesion molecule, JAM, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.18 E-value=3.1e-11 Score=98.79 Aligned_cols=82 Identities=17% Similarity=0.352 Sum_probs=62.6
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCC------------CCceEEEecCcEEEEEEcccccCCCeEE
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL------------GSRFKTTADFGFVTLDLTEVYDRDQGIY 139 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~------------~~~~~~~~~~~~~~L~I~~~~~~D~G~Y 139 (805)
.++.+.+.+|++++|.|.+. +.|.|.|.|+|++..+.. ..+.... + .+|.|.+++.+|+|.|
T Consensus 7 ~~~~v~v~~G~~v~l~C~~~--g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~tL~I~~v~~~D~G~Y 80 (102)
T d1f97a1 7 AQSDVQVPENESIKLTCTYS--GFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFS--S--SGITFSSVTRKDNGEY 80 (102)
T ss_dssp SCSEEEEETTCCEEEECEEE--SCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEE--T--TEEEESCCCGGGCEEE
T ss_pred cCCcEEEeCCCEEEEEEEcC--CCCCCeEEEEeccccceeeeccccccccceeeEEEec--C--CEEEEeECCccCCEEE
Confidence 33368999999999999999 688899999985432211 1122221 1 2799999999999999
Q ss_pred EEEEEeCCeeEEEEEEEEEe
Q psy2166 140 TCRAWNLAGETFTSTTIYCS 159 (805)
Q Consensus 140 ~C~a~n~~g~~~~~~~l~V~ 159 (805)
+|.|.|..|.......+.|.
T Consensus 81 ~C~a~n~~g~~~~~~~v~v~ 100 (102)
T d1f97a1 81 TCMVSEEGGQNYGEVSIHLT 100 (102)
T ss_dssp EEEEEETTSSSEEEEEEEEE
T ss_pred EEEEEECCCCEEEEEEEEEE
Confidence 99999999988777776664
|
| >d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Semaphorin 4d Ig-like domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=1e-11 Score=98.60 Aligned_cols=78 Identities=13% Similarity=0.215 Sum_probs=61.9
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCC-ceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGS-RFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFTS 153 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~ 153 (805)
...+.+|++++|+|.+. + +.+.+.|+++|..+.... ++.+..++ +|.|.+++.+|+|.|+|.|.|..|.....
T Consensus 6 ~~~~~~G~~~~l~C~~~--g-~~~~v~W~~~g~~l~~~~~~~~~~~~~---~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~ 79 (92)
T d1olza1 6 QHFFKHGGTAELKCSQK--S-NLARVFWKFQNGVLKAESPKYGLMGRK---NLLIFNLSEGDSGVYQCLSEERVKNKTVF 79 (92)
T ss_dssp EEEEETTSCEEECCCCS--C-TTCEEEEEESSSBCCCCSSSBCCTTTT---CEEECSCCGGGCEEEEEEEEEECSSSEEE
T ss_pred heeEeCCCEEEEEEEee--c-cCCceeeecCcccceeeeeeeecceee---EEEECCCCHHHCcEEEEEEEEcCCCEEEE
Confidence 35789999999999998 4 567999999999887654 45544444 69999999999999999999987766554
Q ss_pred EEEEE
Q psy2166 154 TTIYC 158 (805)
Q Consensus 154 ~~l~V 158 (805)
..+.+
T Consensus 80 ~~l~~ 84 (92)
T d1olza1 80 QVVAK 84 (92)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44433
|
| >d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Type-1 interleukin-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=4.5e-11 Score=96.72 Aligned_cols=71 Identities=27% Similarity=0.240 Sum_probs=58.8
Q ss_pred ceecCCCcEEEEE------EEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCee
Q psy2166 76 FKLGEAQPLHLEA------QVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGE 149 (805)
Q Consensus 76 ~~v~~G~~v~L~C------~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~ 149 (805)
..+..|....|.| .+. ++|.|.|.|+|||.+|..+.+.....++ .|.|.+++.+|+|.|+|.|.|..|.
T Consensus 9 q~~~~g~~~~l~Cp~~~~~~~~--~~p~P~i~W~kdg~~l~~~~~~~~~~~~---~L~I~~v~~~D~G~Y~C~a~n~~~g 83 (103)
T d1iray2 9 QKLPVAGDGGLVCPYMEFFKNE--NNELPKLQWYKDCKPLLLDNIHFSGVKD---RLIVMNVAEKHRGNYTCHASYTYLG 83 (103)
T ss_dssp EEEESSSCEEEECTTGGGGCBT--TTBCCCCEEEETTEECCCCSSSEEEETT---EEEESSCCGGGCEEEEEEEEEEETT
T ss_pred EEEecCCCEEEEcCCccccccC--CCCCCEEEEEECCccccCCCcEEEecCC---EEEEcccccccCcEEEEEEEECcCC
Confidence 4678999999999 444 7899999999999999877655444444 7999999999999999999997654
Q ss_pred EE
Q psy2166 150 TF 151 (805)
Q Consensus 150 ~~ 151 (805)
..
T Consensus 84 ~~ 85 (103)
T d1iray2 84 KQ 85 (103)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), III [TaxId: 9606]
Probab=99.15 E-value=4.8e-11 Score=93.05 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=57.7
Q ss_pred cCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCc-eEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEE
Q psy2166 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNL-KIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTC 141 (805)
Q Consensus 63 ~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 141 (805)
.++|.+++.++ ...|.+|++++|.|.+. +.|.+ .+.|++||..+..+.. +|.|.+++.+|+|.|+|
T Consensus 3 lPkpvi~~~P~-~~~v~~G~~vtL~C~~~--~~~~~~~~~~~~~~~~~~~~~~----------~l~i~~~~~~d~G~Y~C 69 (84)
T d1fnla1 3 LPKAVVFLEPQ-WYSVLEKDSVTLKCQGA--YSPEDNSTQWFHNESLISSQAS----------SYFIDAATVNDSGEYRC 69 (84)
T ss_dssp CCCCEEEEESC-CSEEETTCCEEEEEECC--CBTTBCCCEEEETTEEEESSCS----------EEEESSCCGGGCEEEEE
T ss_pred CCCCEEEECCC-CcEEeCCCeEEEEEEec--cCCCCeEEEEeeeceeeeecce----------eeEecCCcccCCEEEEE
Confidence 45677666665 57899999999999998 55655 4667889887654332 79999999999999999
Q ss_pred EEEeCCee
Q psy2166 142 RAWNLAGE 149 (805)
Q Consensus 142 ~a~n~~g~ 149 (805)
.|.+..++
T Consensus 70 ~a~~s~~S 77 (84)
T d1fnla1 70 QTNLSTLS 77 (84)
T ss_dssp ECSSSCCC
T ss_pred EccCCCcc
Confidence 99876443
|
| >d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Fc gamma receptor ectodomain (CD32) species: Human (Homo sapiens), IIb [TaxId: 9606]
Probab=99.14 E-value=4.1e-11 Score=93.76 Aligned_cols=79 Identities=16% Similarity=0.267 Sum_probs=60.2
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCC-ceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEE
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPN-LKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRA 143 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 143 (805)
+|.+.+.++ ...|.+|+.++|.|.+. +.|. ..+.|++||..+..... .|.|.+++.+|+|.|+|.|
T Consensus 4 kp~i~~~P~-~~~v~~G~~v~L~C~~~--~~~~~~~~~w~~~g~~~~~~~~----------~l~i~~v~~~dsG~Y~C~a 70 (85)
T d2fcba1 4 KAVLKLEPQ-WINVLQEDSVTLTCRGT--HSPESDSIQWFHNGNLIPTHTQ----------PSYRFKANNNDSGEYTCQT 70 (85)
T ss_dssp BCEEEEESC-CSEEETTCEEEEEEECS--SCCCTTCCEEEETTEECTTCCS----------SEEEEECCGGGCEEEEEEC
T ss_pred CCEEEECCC-CeEEcCCCeEEEEEEEe--eccceeEEEeeccccccccccc----------ceEEeeccccCCcEEEEEC
Confidence 455555444 57899999999999998 4554 46899999999876533 5889999999999999999
Q ss_pred EeCCeeEEEEEEEEE
Q psy2166 144 WNLAGETFTSTTIYC 158 (805)
Q Consensus 144 ~n~~g~~~~~~~l~V 158 (805)
.|..++.. ..|+|
T Consensus 71 ~ns~~S~~--v~l~V 83 (85)
T d2fcba1 71 GQTSLSDP--VHLTV 83 (85)
T ss_dssp TTSBCCCC--EEEEE
T ss_pred CCCccccc--EEEEE
Confidence 88655433 34444
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=99.13 E-value=7.3e-12 Score=103.48 Aligned_cols=78 Identities=18% Similarity=0.128 Sum_probs=60.8
Q ss_pred ccCCCCeEEEEEEE-eecCCCCeEEEEEECCEEccCCC-------CeEEEeeCcEEEEEEcCCCCCCCE---EEEEEEEc
Q psy2166 703 NLSEGEIAHFEASL-IPVGDQTMTVEFLYNGKPIEASH-------RIRTVHAFGMVVLEILGTKIEDTG---VYTCRATN 771 (805)
Q Consensus 703 ~v~~G~~~~l~C~~-~~~g~p~~~v~W~~~g~~l~~~~-------~~~~~~~~~~~~L~i~~v~~~d~G---~Y~C~a~N 771 (805)
++.+|++++|.|.+ . |+|.|.+.|+|+|..+.... ++. ....+ +|.|.+++.+|+| .|+|.|.|
T Consensus 13 t~~EG~~~~L~C~v~~--G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~-~~~~~--~L~i~~v~~~D~gd~g~Y~C~A~N 87 (111)
T d1biha2 13 TPIEGRPFQLDCVLPN--AYPKPLITWKKRLSGADPNADVTDFDRRIT-AGPDG--NLYFTIVTKEDVSDIYKYVCTAKN 87 (111)
T ss_dssp CCBTTEEEEECCCCCE--EESCCEEEEEEEETTSCGGGCCCCCCTTEE-ECTTS--CEEEEEECGGGCCSSEEEEEEEEC
T ss_pred cccCCCeEEEEEEccc--CCCCCEEEEEeCCccccccccceeeeeeec-ccccc--ccEEeeeEeeccCCceEEEEEEEe
Confidence 67899999999987 7 99999999999886654432 222 22233 6999999988776 89999999
Q ss_pred CCccEEEEEEEEEE
Q psy2166 772 KWGQAEISVNLECV 785 (805)
Q Consensus 772 ~~G~~~~~~~l~V~ 785 (805)
.+|.+.....+.++
T Consensus 88 ~~g~~~~~~~~~~i 101 (111)
T d1biha2 88 AAVDEEVVLVEYEI 101 (111)
T ss_dssp TTCSSCEEEEEEEE
T ss_pred CCCCceEEEEEEEe
Confidence 99988877655554
|
| >d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: IgE high affinity receptor alpha subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=4.5e-11 Score=92.72 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=59.0
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCCc-eEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEEE
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNL-KIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRA 143 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~-~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 143 (805)
+|.+.+.++ ...|.+|+.++|.|.+. ++|.+ .+.|++|+..+..... .|.|.+++.+|+|.|.|.|
T Consensus 1 KP~It~~P~-~~~v~~G~~v~L~C~~~--~~~~~~~~~~~~~~~~~~~~~~----------~l~i~~v~~~d~G~Y~C~a 67 (82)
T d1f2qa1 1 KPKVSLNPP-WNRIFKGENVTLTCNGN--NFFEVSSTKWFHNGSLSEETNS----------SLNIVNAKFEDSGEYKCQH 67 (82)
T ss_dssp CCCCEEESS-CSEEETTCCEEEECCTT--CC----CCEEEETTEECSCCSS----------EEEECSCCGGGCEEEEEEC
T ss_pred CCEEEEcCC-CeEEeCCCeEEEEEEEe--eeeeecceeeeeeeeeeecccc----------eeEECCCChhhCCcEEEEe
Confidence 467777654 56899999999999998 56655 4667899988875432 6999999999999999999
Q ss_pred EeCCeeEEEEEEEEE
Q psy2166 144 WNLAGETFTSTTIYC 158 (805)
Q Consensus 144 ~n~~g~~~~~~~l~V 158 (805)
.|..+.. .+.|+|
T Consensus 68 ~~s~~S~--~v~l~V 80 (82)
T d1f2qa1 68 QQVNESE--PVYLEV 80 (82)
T ss_dssp TTSSCCC--CEEEEE
T ss_pred cCCCCcc--cEEEEE
Confidence 8865543 344554
|
| >d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Intercellular cell adhesion molecule-2 (ICAM-2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=1.5e-11 Score=100.81 Aligned_cols=83 Identities=14% Similarity=0.083 Sum_probs=59.8
Q ss_pred cccCCCeEEEEEEEeeCCC--CCcEEEEEECCEEccCCCceEEE--eeCCEEEEEEccCCCCCCEEEEEEEEcCCcceEE
Q psy2166 507 QLKEGQSAHFEARLTPVTD--PDLVVEWFYNGKKLPHGHRYRTF--HDFGIVILDILYCYEENSGVYECRATNKYGSDVT 582 (805)
Q Consensus 507 ~v~~G~~v~L~C~v~~~g~--p~~~v~W~~~g~~l~~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 582 (805)
.+.+|+.++|+|.+.+ +. |.++++|+|||+.|..+...... .....+.|.|.....+|.|.|+|+|.|..|....
T Consensus 13 ~v~~G~~v~l~C~v~g-~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~~ 91 (106)
T d1zxqa1 13 LVAVGKSFTIECRVPT-VEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGG 91 (106)
T ss_dssp EECTTSEEEEEEEECS-CBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGGTC
T ss_pred EEeCCCEEEEEEEEeC-cccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCCCC
Confidence 3889999999999985 34 56689999999998543222111 1223456888877778888999999999887655
Q ss_pred EEEEEEee
Q psy2166 583 KASLKCVS 590 (805)
Q Consensus 583 ~~~l~V~~ 590 (805)
...+.+..
T Consensus 92 ~~~~~~s~ 99 (106)
T d1zxqa1 92 NIFHKHSA 99 (106)
T ss_dssp CEEEEECC
T ss_pred eeEecccC
Confidence 55555543
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.94 E-value=1.7e-10 Score=92.26 Aligned_cols=75 Identities=12% Similarity=-0.031 Sum_probs=56.8
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCC------------CCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEAS------------HRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 770 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~------------~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 770 (805)
.+..|++|+|.|.+ +.|.+.|.|++++..+... .+..+ +.....|+|.+++.+|+|.|+|.|.
T Consensus 6 ~~~~G~sVtl~c~~---~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~sL~I~~l~~~DsG~Y~c~~~ 80 (93)
T d1ccza1 6 YGVVYGNVTFHVPS---NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYL--DTVSGSLTIYNLTSSDEDEYEMESP 80 (93)
T ss_dssp EEETTCCEEECCCC---SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEE--CTTTCCEEECSCCGGGCEEEEEECT
T ss_pred EEEECCCEEEEecC---CCCCcEEEEEEeccccceeeecceeeCCCccceEEE--cCCeeEEEEEecChhhCEEEEEEEE
Confidence 78899999999986 5689999999998765321 22222 2223479999999999999999999
Q ss_pred cCCccEEEEEEEEE
Q psy2166 771 NKWGQAEISVNLEC 784 (805)
Q Consensus 771 N~~G~~~~~~~l~V 784 (805)
|..|..+ +.|.|
T Consensus 81 n~~~t~~--~~l~V 92 (93)
T d1ccza1 81 NITDTMK--FFLYV 92 (93)
T ss_dssp TCCSCEE--EEEEE
T ss_pred CCCcEEE--EEEEE
Confidence 9877554 45544
|
| >d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Hemolin species: Moth (Hyalophora cecropia) [TaxId: 7123]
Probab=98.93 E-value=2e-10 Score=94.56 Aligned_cols=78 Identities=23% Similarity=0.233 Sum_probs=60.3
Q ss_pred ceecCCCcEEEEEEE-ecCCCCCceEEEEECCEecCCCC-------ceEEEecCcEEEEEEcccccCCCe---EEEEEEE
Q psy2166 76 FKLGEAQPLHLEAQV-EPKNDPNLKIEWIFNGKPLELGS-------RFKTTADFGFVTLDLTEVYDRDQG---IYTCRAW 144 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~-~~~~~p~~~v~W~k~g~~i~~~~-------~~~~~~~~~~~~L~I~~~~~~D~G---~Y~C~a~ 144 (805)
..+.||++++|.|.+ . |.|.|.+.|+|++..+.... ++.+..++ +|.|.+++.+|+| .|.|.|.
T Consensus 12 ~t~~EG~~~~L~C~v~~--G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~---~L~i~~v~~~D~gd~g~Y~C~A~ 86 (111)
T d1biha2 12 KTPIEGRPFQLDCVLPN--AYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG---NLYFTIVTKEDVSDIYKYVCTAK 86 (111)
T ss_dssp ECCBTTEEEEECCCCCE--EESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTS---CEEEEEECGGGCCSSEEEEEEEE
T ss_pred ccccCCCeEEEEEEccc--CCCCCEEEEEeCCccccccccceeeeeeecccccc---ccEEeeeEeeccCCceEEEEEEE
Confidence 356799999999997 6 68999999999877664322 33344343 6999999999877 7999999
Q ss_pred eCCeeEEEEEEEEE
Q psy2166 145 NLAGETFTSTTIYC 158 (805)
Q Consensus 145 n~~g~~~~~~~l~V 158 (805)
|..|.......+.+
T Consensus 87 N~~g~~~~~~~~~~ 100 (111)
T d1biha2 87 NAAVDEEVVLVEYE 100 (111)
T ss_dssp CTTCSSCEEEEEEE
T ss_pred eCCCCceEEEEEEE
Confidence 99998876655444
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.89 E-value=1.4e-08 Score=86.34 Aligned_cols=90 Identities=16% Similarity=0.205 Sum_probs=65.1
Q ss_pred CCCCceecCCCcEEEEEEEecC-CCCCceEEEEECCEec-----------C------CCCceEEEec---CcEEEEEEcc
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPK-NDPNLKIEWIFNGKPL-----------E------LGSRFKTTAD---FGFVTLDLTE 130 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~-~~p~~~v~W~k~g~~i-----------~------~~~~~~~~~~---~~~~~L~I~~ 130 (805)
+...+.+.+|++|+|.|.+... ......|.|++.+... . ...|..+..+ .+..+|.|.+
T Consensus 8 p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~ 87 (126)
T d1pkoa_ 8 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQN 87 (126)
T ss_dssp CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESS
T ss_pred CCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEE
Confidence 3335788999999999998632 2345579999864311 0 1124444332 3578999999
Q ss_pred cccCCCeEEEEEEEeCCeeEEEEEEEEEecc
Q psy2166 131 VYDRDQGIYTCRAWNLAGETFTSTTIYCSTK 161 (805)
Q Consensus 131 ~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~ 161 (805)
++.+|+|.|+|.+.+..+.....+.|.|.++
T Consensus 88 v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P 118 (126)
T d1pkoa_ 88 VRFSDEGGYTCFFRDHSYQEEAAVELKVEDP 118 (126)
T ss_dssp CCGGGCEEEEEEEEETTEEEEEEEEEEEECT
T ss_pred EchhHCeEEEEEEEECCCEEEEEEEEEEeCC
Confidence 9999999999999999888888888888764
|
| >d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2-binding domain of CD58, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=5.7e-10 Score=89.13 Aligned_cols=79 Identities=10% Similarity=0.057 Sum_probs=57.2
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEECCEecCC----------CCceEEEecCcEEEEEEcccccCCCeEEEEEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLEL----------GSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAW 144 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~----------~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 144 (805)
.+....|++|+|.|.+. .|.+.|.|++++..+.. ..+..+..+....+|+|.+++.+|+|.|.|.+.
T Consensus 4 ~v~~~~G~sVtl~c~~~---~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~ 80 (93)
T d1ccza1 4 QIYGVVYGNVTFHVPSN---VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESP 80 (93)
T ss_dssp EEEEETTCCEEECCCCS---SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECT
T ss_pred EEEEEECCCEEEEecCC---CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEE
Confidence 45778999999999865 68889999999877631 111122222334479999999999999999998
Q ss_pred eCCeeEEEEEEEEE
Q psy2166 145 NLAGETFTSTTIYC 158 (805)
Q Consensus 145 n~~g~~~~~~~l~V 158 (805)
|..+..+ ..|+|
T Consensus 81 n~~~t~~--~~l~V 92 (93)
T d1ccza1 81 NITDTMK--FFLYV 92 (93)
T ss_dssp TCCSCEE--EEEEE
T ss_pred CCCcEEE--EEEEE
Confidence 8765443 45554
|
| >d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin oligodendrocyte glycoprotein (MOG) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.84 E-value=8.9e-09 Score=87.56 Aligned_cols=84 Identities=23% Similarity=0.259 Sum_probs=60.7
Q ss_pred ccCCCCeEEEEEEEeec-CCCCeEEEEEECCEE-----------cc------CCCCeEEEee---CcEEEEEEcCCCCCC
Q psy2166 703 NLSEGEIAHFEASLIPV-GDQTMTVEFLYNGKP-----------IE------ASHRIRTVHA---FGMVVLEILGTKIED 761 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~-g~p~~~v~W~~~g~~-----------l~------~~~~~~~~~~---~~~~~L~i~~v~~~d 761 (805)
.+.+|++++|.|.+... ......|.|++.+.. .. ...+..+..+ .+..+|.|.+++.+|
T Consensus 13 ~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D 92 (126)
T d1pkoa_ 13 RALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSD 92 (126)
T ss_dssp EEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSCCGGG
T ss_pred EEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEEchhH
Confidence 88899999999998611 223357999986421 10 0123333322 346799999999999
Q ss_pred CEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 762 TGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 762 ~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
+|.|+|.+.|..|..+..++|+|.+
T Consensus 93 ~G~Y~C~v~~~~~~~~~~v~L~V~~ 117 (126)
T d1pkoa_ 93 EGGYTCFFRDHSYQEEAAVELKVED 117 (126)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CeEEEEEEEECCCEEEEEEEEEEeC
Confidence 9999999999999888888888864
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.76 E-value=7.6e-09 Score=82.74 Aligned_cols=80 Identities=16% Similarity=0.156 Sum_probs=56.5
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccC----------CCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEEcC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEA----------SHRIRTVHAFGMVVLEILGTKIEDTGVYTCRATNK 772 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~----------~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~ 772 (805)
....|++|+|.|.......+...|.|+|++..+.. ..+..+ ...+ +|+|.+++.+|+|.|+|.+.|.
T Consensus 6 ~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~-~~ng--SL~I~nl~~~DsG~Y~c~v~~~ 82 (98)
T d1hnga1 6 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEI-LANG--DLKIKNLTRDDSGTYNVTVYST 82 (98)
T ss_dssp EEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEE-CTTS--CEEESSCCGGGCEEEEEEEEET
T ss_pred EEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEE-CCCc--cEEEeCCCHHHCEEEEEEEEeC
Confidence 56789999999963211233468999999876531 122222 2223 5999999999999999999999
Q ss_pred CccEE--EEEEEEEE
Q psy2166 773 WGQAE--ISVNLECV 785 (805)
Q Consensus 773 ~G~~~--~~~~l~V~ 785 (805)
.|... .++.|.|+
T Consensus 83 ~g~~~~~~~~~L~V~ 97 (98)
T d1hnga1 83 NGTRILNKALDLRIL 97 (98)
T ss_dssp TCCEEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEEEE
Confidence 99874 55556554
|
| >d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD2, first domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.74 E-value=9.4e-09 Score=82.21 Aligned_cols=81 Identities=12% Similarity=0.167 Sum_probs=58.5
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEECCEecC----------CCCceEEEecCcEEEEEEcccccCCCeEEEEEEEe
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLE----------LGSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWN 145 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~----------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n 145 (805)
+....|++|+|.|...........|.|+|++..+. .+.++.+..++ +|+|.+++.+|+|.|+|.+.+
T Consensus 5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ng---SL~I~nl~~~DsG~Y~c~v~~ 81 (98)
T d1hnga1 5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG---DLKIKNLTRDDSGTYNVTVYS 81 (98)
T ss_dssp EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTS---CEEESSCCGGGCEEEEEEEEE
T ss_pred EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCc---cEEEeCCCHHHCEEEEEEEEe
Confidence 45678999999996432123345799999987663 22345444443 799999999999999999999
Q ss_pred CCeeEE--EEEEEEEe
Q psy2166 146 LAGETF--TSTTIYCS 159 (805)
Q Consensus 146 ~~g~~~--~~~~l~V~ 159 (805)
..|... ..+.|.|.
T Consensus 82 ~~g~~~~~~~~~L~V~ 97 (98)
T d1hnga1 82 TNGTRILNKALDLRIL 97 (98)
T ss_dssp TTCCEEEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEEEE
Confidence 988764 44555553
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=3.9e-08 Score=83.19 Aligned_cols=82 Identities=18% Similarity=0.340 Sum_probs=60.1
Q ss_pred ccCCCCeEEEEEEEeecCCCC----eEEEEEECCE----------------Ecc-----CCCCeEEEee---CcEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT----MTVEFLYNGK----------------PIE-----ASHRIRTVHA---FGMVVLEI 754 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~----~~v~W~~~g~----------------~l~-----~~~~~~~~~~---~~~~~L~i 754 (805)
.+.+|+++.|.|.+. +.+. ..|.|++.+. ... -.+|+.+..+ .+.+.|+|
T Consensus 15 ~~~~G~~v~L~C~~~--~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I 92 (124)
T d1eaja_ 15 EKAKGETAYLPCKFT--LSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINV 92 (124)
T ss_dssp EEETTSCEEECCBEE--CCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEE
T ss_pred EEECCCcEEEeEEEe--cccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEE
Confidence 788999999999987 4333 4689997211 010 0133333221 23467999
Q ss_pred cCCCCCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 755 LGTKIEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 755 ~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
.+++.+|+|.|.|.+.|..|.....+.|+|.|
T Consensus 93 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~V 124 (124)
T d1eaja_ 93 TNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 124 (124)
T ss_dssp CSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred cccEEccCEEEEEEEEECCCeEEeEEEEEEEC
Confidence 99999999999999999999999999999864
|
| >d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.58 E-value=1.1e-07 Score=76.72 Aligned_cols=72 Identities=15% Similarity=0.270 Sum_probs=55.0
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec------------CCCCceEEEecCcEEEEEEcccccCCCeE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 138 (805)
|..+.+.+|++|+|.|... ......+.||+- |... ....++....++..++|+|.+++.+|+|.
T Consensus 7 P~~l~~~~G~svtl~C~~s--~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~ 84 (106)
T d1a0ql1 7 PSSLSASLGGKVTITCKAS--QDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIAT 84 (106)
T ss_dssp CSEEEECTTCCEEEEEEES--SCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSE
T ss_pred CCEEEECCCCCEEEEEEcC--CCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEe
Confidence 4467899999999999987 344446999982 2111 12347777777788899999999999999
Q ss_pred EEEEEEeC
Q psy2166 139 YTCRAWNL 146 (805)
Q Consensus 139 Y~C~a~n~ 146 (805)
|.|.+...
T Consensus 85 YyCa~~~~ 92 (106)
T d1a0ql1 85 YYCLQYYN 92 (106)
T ss_dssp EEEEECSS
T ss_pred EEEEEeCC
Confidence 99998654
|
| >d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Coxsackie virus and adenovirus receptor (Car), domain 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=6.7e-08 Score=81.71 Aligned_cols=85 Identities=18% Similarity=0.320 Sum_probs=60.8
Q ss_pred CceecCCCcEEEEEEEecC--CCCCceEEEEECCEe----------------cC-----CCCceEEEec---CcEEEEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPK--NDPNLKIEWIFNGKP----------------LE-----LGSRFKTTAD---FGFVTLDL 128 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~--~~p~~~v~W~k~g~~----------------i~-----~~~~~~~~~~---~~~~~L~I 128 (805)
.+.+.+|++++|+|.+... ......|.|++.... .. ..+|..+..+ .+.++|+|
T Consensus 13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I 92 (124)
T d1eaja_ 13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINV 92 (124)
T ss_dssp EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEE
T ss_pred eEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEE
Confidence 4678899999999998733 222356899973111 00 1234444332 24568999
Q ss_pred cccccCCCeEEEEEEEeCCeeEEEEEEEEEe
Q psy2166 129 TEVYDRDQGIYTCRAWNLAGETFTSTTIYCS 159 (805)
Q Consensus 129 ~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 159 (805)
.+++.+|+|.|.|.+.+..+.......|+|.
T Consensus 93 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~ 123 (124)
T d1eaja_ 93 TNLQLSDIGTYQCKVKKAPGVANKKIHLVVL 123 (124)
T ss_dssp CSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred cccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence 9999999999999999998888888888875
|
| >d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=5.2e-08 Score=79.69 Aligned_cols=93 Identities=11% Similarity=0.082 Sum_probs=62.0
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCe--EEEEEECCEEccCCCCeEEEee-Cc---EEEEEEcCCCCCCCE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTM--TVEFLYNGKPIEASHRIRTVHA-FG---MVVLEILGTKIEDTG 763 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~--~v~W~~~g~~l~~~~~~~~~~~-~~---~~~L~i~~v~~~d~G 763 (805)
.+|.|.... .+.+|+.++|.|.+. .++|.+ .|.|+++++.+........... ++ .+.|++.-...+|..
T Consensus 3 ~~P~I~~~~----~l~~G~~~~l~C~v~-~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~ 77 (109)
T d1vcaa1 3 KDPEIHLSG----PLEAGKPITVKCSVA-DVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGK 77 (109)
T ss_dssp SCCEEEESS----CEETTSCEEEEEEEE-EEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTC
T ss_pred CCCEEecCC----CccCCCeEEEEeEeC-CcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCc
Confidence 457776432 467999999999998 367854 7999999987754321111111 11 246888766666777
Q ss_pred EEEEEEEcCCcc-------EEEEEEEEEEEe
Q psy2166 764 VYTCRATNKWGQ-------AEISVNLECVVW 787 (805)
Q Consensus 764 ~Y~C~a~N~~G~-------~~~~~~l~V~~~ 787 (805)
.|+|+|+|.++. ...+..|.|.+.
T Consensus 78 ~ltC~a~~~~~~~~~~~~~~~t~~~L~V~~~ 108 (109)
T d1vcaa1 78 VLVCRAKLHIDEMDSVPTVRQAVKELQVYIS 108 (109)
T ss_dssp EEEEEEEECSCCCTTSCSEEEEEEECCEECC
T ss_pred EEEEEEEcCcCCccccccccceeEEeEEEeC
Confidence 999999999764 234556777653
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.54 E-value=3.5e-08 Score=80.14 Aligned_cols=77 Identities=14% Similarity=0.056 Sum_probs=55.6
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCEEcc-------------------CCCCeEEEeeCcEEEEEEcCCCCCCCE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIE-------------------ASHRIRTVHAFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~-------------------~~~~~~~~~~~~~~~L~i~~v~~~d~G 763 (805)
.+.+|++|.|.|... ......+.|+|...... -.+|..+..++ +|.|.+++.+|+|
T Consensus 10 ~v~~G~~V~L~c~~~--p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ng---SL~I~~v~~~D~G 84 (107)
T d1l6za1 10 QVAEDNNVLLLVHNL--PLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG---SLLFQMITMKDMG 84 (107)
T ss_dssp SCCTTCCEEEEEESC--CTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTS---CEEECSCCGGGCE
T ss_pred cccCCCCEEEEecCC--CCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccc---cEEEcCCCchhCE
Confidence 678999999999843 33457899999543211 01355544332 5999999999999
Q ss_pred EEEEEEEcCCc-cEEEEEEEEE
Q psy2166 764 VYTCRATNKWG-QAEISVNLEC 784 (805)
Q Consensus 764 ~Y~C~a~N~~G-~~~~~~~l~V 784 (805)
.|+|.+.|..+ ..+.+++|.|
T Consensus 85 ~Y~c~v~~~~~~~~~~~v~L~V 106 (107)
T d1l6za1 85 VYTLDMTDENYRRTQATVRFHV 106 (107)
T ss_dssp EEEEEEEETTEEECCCCEEECC
T ss_pred EEEEEEEECCCCEEEEEEEEEE
Confidence 99999998865 5556677766
|
| >d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=1.3e-07 Score=74.64 Aligned_cols=81 Identities=14% Similarity=0.172 Sum_probs=58.0
Q ss_pred cCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEE
Q psy2166 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 63 ~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
+++|.+...+. ..|..|++|+|.|... .....+.|+|+|.......+. ....+....+.|.+++.+|+|.|+|.
T Consensus 2 lPKPsLsa~P~--~~V~~G~~VTL~C~~~---~~~~~f~L~k~g~~~~~~~~~-~~~~~~~a~F~i~~v~~~~~G~Y~C~ 75 (95)
T d1olla1 2 LPKPFIWAEPH--FMVPKEKQVTICCQGN---YGAVEYQLHFEGSLFAVDRPK-PPERINKVKFYIPDMNSRMAGQYSCI 75 (95)
T ss_dssp CCCCEEEEESC--SEEETTCCEEEEEECC---TTCCEEEEEETTEEEEEECCS-SCTTCCEEEEEESSCCGGGCEEEEEE
T ss_pred CCCCEEEeeCC--CcccCCCcEEEEEecC---CCccEEEEEECCCCcceeEEc-cCCCccEEEEEEeeeecCCCceEEEE
Confidence 46788777664 3688999999999976 556789999998643211110 00112345799999999999999999
Q ss_pred EEeCCee
Q psy2166 143 AWNLAGE 149 (805)
Q Consensus 143 a~n~~g~ 149 (805)
..+..+.
T Consensus 76 y~~~~~~ 82 (95)
T d1olla1 76 YRVGELW 82 (95)
T ss_dssp EEETTEE
T ss_pred eCCCCCc
Confidence 8876543
|
| >d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.51 E-value=8.9e-08 Score=77.65 Aligned_cols=77 Identities=13% Similarity=0.052 Sum_probs=55.4
Q ss_pred eecCCCcEEEEEEEecCCCCCceEEEEECCEecC-------------------CCCceEEEecCcEEEEEEcccccCCCe
Q psy2166 77 KLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLE-------------------LGSRFKTTADFGFVTLDLTEVYDRDQG 137 (805)
Q Consensus 77 ~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~-------------------~~~~~~~~~~~~~~~L~I~~~~~~D~G 137 (805)
.+.+|++|+|.|... +.....+.|+|...... ..+|..+..++ +|.|.+++.+|+|
T Consensus 10 ~v~~G~~V~L~c~~~--p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ng---SL~I~~v~~~D~G 84 (107)
T d1l6za1 10 QVAEDNNVLLLVHNL--PLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG---SLLFQMITMKDMG 84 (107)
T ss_dssp SCCTTCCEEEEEESC--CTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTS---CEEECSCCGGGCE
T ss_pred cccCCCCEEEEecCC--CCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccc---cEEEcCCCchhCE
Confidence 577999999999854 34567899999542211 12366665554 7999999999999
Q ss_pred EEEEEEEeCCee-EEEEEEEEE
Q psy2166 138 IYTCRAWNLAGE-TFTSTTIYC 158 (805)
Q Consensus 138 ~Y~C~a~n~~g~-~~~~~~l~V 158 (805)
.|+|.+.+..+. .+....|.|
T Consensus 85 ~Y~c~v~~~~~~~~~~~v~L~V 106 (107)
T d1l6za1 85 VYTLDMTDENYRRTQATVRFHV 106 (107)
T ss_dssp EEEEEEEETTEEECCCCEEECC
T ss_pred EEEEEEEECCCCEEEEEEEEEE
Confidence 999999887643 444555544
|
| >d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=98.51 E-value=3.2e-07 Score=74.82 Aligned_cols=86 Identities=17% Similarity=0.246 Sum_probs=60.3
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEEC--CEe---c---------CCCCceEEEecCcEEEEEEcccccCCCeEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKP---L---------ELGSRFKTTADFGFVTLDLTEVYDRDQGIYT 140 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~---i---------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 140 (805)
.+.+.+|++|+|.|...+.......+.||+- ++. + ...+++....++..+.|.|.+++.+|++.|.
T Consensus 9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Yy 88 (114)
T d2rhea_ 9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYY 88 (114)
T ss_dssp EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEE
Confidence 5788999999999998743223457899983 211 1 1234777777788899999999999999999
Q ss_pred EEEEeCCeeE---EEEEEEEEec
Q psy2166 141 CRAWNLAGET---FTSTTIYCST 160 (805)
Q Consensus 141 C~a~n~~g~~---~~~~~l~V~~ 160 (805)
|.+....... -.-+.|+|..
T Consensus 89 CA~~~~~~~~~~FG~GT~LtVlg 111 (114)
T d2rhea_ 89 CAAWNDSLDEPGFGGGTKLTVLG 111 (114)
T ss_dssp EEEEETTTTEEEECCCEEEEECS
T ss_pred EeecCCCCCCCEECCCeEEEECC
Confidence 9986542111 1235566653
|
| >d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=9.7e-08 Score=75.36 Aligned_cols=89 Identities=10% Similarity=0.054 Sum_probs=62.5
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
.+|.|...|... |..|++|+|.|... .+...+.|+|+|.......+. ....+....+.|.+|+.+|+|.|+|..
T Consensus 3 PKPsLsa~P~~~--V~~G~~VTL~C~~~---~~~~~f~L~k~g~~~~~~~~~-~~~~~~~a~F~i~~v~~~~~G~Y~C~y 76 (95)
T d1olla1 3 PKPFIWAEPHFM--VPKEKQVTICCQGN---YGAVEYQLHFEGSLFAVDRPK-PPERINKVKFYIPDMNSRMAGQYSCIY 76 (95)
T ss_dssp CCCEEEEESCSE--EETTCCEEEEEECC---TTCCEEEEEETTEEEEEECCS-SCTTCCEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCEEEeeCCCc--ccCCCcEEEEEecC---CCccEEEEEECCCCcceeEEc-cCCCccEEEEEEeeeecCCCceEEEEe
Confidence 468888888665 78999999999963 566789999999643221110 011233457999999999999999999
Q ss_pred EcCCccE--EEEEEEEE
Q psy2166 770 TNKWGQA--EISVNLEC 784 (805)
Q Consensus 770 ~N~~G~~--~~~~~l~V 784 (805)
.+..+.. +...+|.|
T Consensus 77 ~~~~~~S~~Sd~leL~V 93 (95)
T d1olla1 77 RVGELWSEPSNLLDLVV 93 (95)
T ss_dssp EETTEECCCCCCEEEEE
T ss_pred CCCCCccCCCCCEEEEE
Confidence 8876532 33344444
|
| >d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Programmed cell death protein 1, PD1, extracellular domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.51 E-value=3.4e-07 Score=75.14 Aligned_cols=73 Identities=16% Similarity=0.264 Sum_probs=54.2
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEE--CCEe-------------cCCCCceEEEec--CcEEEEEEcccccCC
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKP-------------LELGSRFKTTAD--FGFVTLDLTEVYDRD 135 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~-------------i~~~~~~~~~~~--~~~~~L~I~~~~~~D 135 (805)
|..+.+.+|++|+|.|.... ......+.||| .|.. .....|+.+..+ +..++|.|.+++.+|
T Consensus 6 P~~l~v~~G~~vtl~C~~~~-~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~D 84 (114)
T d3bp5a1 6 PAWLTVSEGANATFTCSLSN-WSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRND 84 (114)
T ss_dssp SSEEEEETTCCEEEEEEESC-CCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGG
T ss_pred CCeEEECCCCCEEEEEEECC-CCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCC
Confidence 44678999999999999863 23445789998 2221 123457777654 356789999999999
Q ss_pred CeEEEEEEEeC
Q psy2166 136 QGIYTCRAWNL 146 (805)
Q Consensus 136 ~G~Y~C~a~n~ 146 (805)
+|.|.|.+...
T Consensus 85 sg~YyCa~~~~ 95 (114)
T d3bp5a1 85 SGIYLCGAISL 95 (114)
T ss_dssp CEEEEEEEECS
T ss_pred CeEEEEEEEeC
Confidence 99999998754
|
| >d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=6.1e-08 Score=77.61 Aligned_cols=85 Identities=9% Similarity=0.024 Sum_probs=58.5
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEE-EeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT-VHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
.+|.+...|.. .|..|++|+|.|... .+...+.|+|+|........... ........+.|.+|+.+|+|.|+|.
T Consensus 6 pkPsLsa~P~~--~V~~G~~VTL~C~~~---~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~ 80 (99)
T d1ucta1 6 PMPFISAKSSP--VIPLDGSVKIQCQAI---REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQ 80 (99)
T ss_dssp CCCCEEESSCS--EEETTCCEEEEECCC---TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEE
T ss_pred CCCEEEecCCC--ceeCCCeEEEEEcCC---CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEE
Confidence 57888888865 488999999999863 56779999998742111111000 1112334689999999999999999
Q ss_pred EEcCCccEEEE
Q psy2166 769 ATNKWGQAEIS 779 (805)
Q Consensus 769 a~N~~G~~~~~ 779 (805)
..|..+....+
T Consensus 81 y~~~~~~S~~S 91 (99)
T d1ucta1 81 YRIGHYRFRYS 91 (99)
T ss_dssp EEETTTEEEEC
T ss_pred EECCCcccCCC
Confidence 99987643333
|
| >d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.49 E-value=2.4e-07 Score=74.66 Aligned_cols=71 Identities=15% Similarity=0.308 Sum_probs=54.7
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------------CCCCceEEEecCcEEEEEEcccccCCCeE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 138 (805)
|..+.|.+|++|+|+|... ......+.||| .|+.. ....|+.....+..++|+|.+++.+|+|.
T Consensus 8 P~slsv~~G~svtl~C~~s--~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~ 85 (106)
T d1i8ka_ 8 PASLSVATGEKVTIRCMTS--TDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGD 85 (106)
T ss_dssp CSEEECCTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred CCEEEECCCCCEEEEEEeC--CCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEE
Confidence 4467899999999999887 34445689997 23221 13457887777788899999999999999
Q ss_pred EEEEEEe
Q psy2166 139 YTCRAWN 145 (805)
Q Consensus 139 Y~C~a~n 145 (805)
|.|.+..
T Consensus 86 YyCa~~~ 92 (106)
T d1i8ka_ 86 YYCLQSF 92 (106)
T ss_dssp EEEEECS
T ss_pred EeEecCc
Confidence 9998754
|
| >d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.49 E-value=2.4e-07 Score=74.85 Aligned_cols=74 Identities=18% Similarity=0.283 Sum_probs=55.7
Q ss_pred cCCCCceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------------CCCCceEEEecCcEEEEEEcccccCCC
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~ 136 (805)
..|..+.+.+|++|+|.|.... .....+.||| .|+.. ....|+.....+..+.|+|.+++.+|+
T Consensus 6 QsP~~ltv~~G~svtl~C~~s~--~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds 83 (107)
T d1ospl1 6 QSSSSFSVSLGDRVTITCKASE--DIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDV 83 (107)
T ss_dssp CCCSEEEECTTCCEEEEEEESS--CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGC
T ss_pred eeCCEEEECCCCCEEEEEecCC--CcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccC
Confidence 3354678999999999999873 3334699998 22211 123578887777788999999999999
Q ss_pred eEEEEEEEeC
Q psy2166 137 GIYTCRAWNL 146 (805)
Q Consensus 137 G~Y~C~a~n~ 146 (805)
|.|.|.+...
T Consensus 84 a~YyCa~~~~ 93 (107)
T d1ospl1 84 ATYFCQQYWS 93 (107)
T ss_dssp SEEEEEECSS
T ss_pred CcEEEeeccC
Confidence 9999987644
|
| >d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.49 E-value=2.9e-07 Score=74.54 Aligned_cols=73 Identities=18% Similarity=0.287 Sum_probs=56.1
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec------------CCCCceEEEecCcEEEEEEcccccCCCe
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQG 137 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G 137 (805)
.|..+.+.+|++|+|+|.... .....+.|||- |+.+ ....++....++..+.|+|.+++.+|+|
T Consensus 7 ~p~~l~v~~G~~vtL~C~~~~--~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa 84 (107)
T d1j1pl_ 7 SPATLSVTPGNSVSLSCRASQ--SIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFG 84 (107)
T ss_dssp ECSEEEECTTCCEEEEEEESS--CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred cCCeEEECCCCCEEEEEEecC--CCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCE
Confidence 344678999999999999873 34457999982 3221 1235788888888899999999999999
Q ss_pred EEEEEEEeC
Q psy2166 138 IYTCRAWNL 146 (805)
Q Consensus 138 ~Y~C~a~n~ 146 (805)
.|.|.+.+.
T Consensus 85 ~YyCa~~~~ 93 (107)
T d1j1pl_ 85 MYFCQQANS 93 (107)
T ss_dssp EEEEEECSS
T ss_pred EEEEEcCCC
Confidence 999987543
|
| >d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.48 E-value=2.9e-07 Score=74.06 Aligned_cols=73 Identities=11% Similarity=0.197 Sum_probs=54.6
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------------CCCCceEEEecCcEEEEEEcccccCCCe
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQG 137 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G 137 (805)
.|..+.+.+|++|+|+|... ......+.||| .|+.. ....++.....+....|.|.+++.+|+|
T Consensus 7 ~P~s~~~~~G~svtl~C~~s--~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa 84 (107)
T d1c5cl1 7 SPSSLSASLGERVSLTCRTS--QEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFA 84 (107)
T ss_dssp ECSEEEECTTCCEEEEEEES--SCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred cCCEEEECCCCCEEEEEEeC--CCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCe
Confidence 34467899999999999987 34555699998 33221 1234666666667789999999999999
Q ss_pred EEEEEEEeC
Q psy2166 138 IYTCRAWNL 146 (805)
Q Consensus 138 ~Y~C~a~n~ 146 (805)
.|.|.+.+.
T Consensus 85 ~YyCa~~~~ 93 (107)
T d1c5cl1 85 DYYCLQYAS 93 (107)
T ss_dssp EEEEEECSS
T ss_pred EEEEecCcC
Confidence 999987653
|
| >d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.47 E-value=2.9e-07 Score=75.07 Aligned_cols=73 Identities=19% Similarity=0.190 Sum_probs=53.0
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------------CCCCceEEEecCcEEEEEEcccccCCCeE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 138 (805)
|+.+.+.+|++|+|.|..+. ......+.||| .|+.. ....++....++..+.|.|.+++.+|+|.
T Consensus 5 P~svsv~~G~~vtl~C~~s~-~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~ 83 (110)
T d2esvd1 5 PPSMDCAEGRAANLPCNHST-ISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAV 83 (110)
T ss_dssp CSEEEEETTSCEEEEEECTT-CCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEE
T ss_pred CCEEEECCCCCEEEEEEEcC-CCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceE
Confidence 34688999999999999763 23345689998 23211 11224555556678899999999999999
Q ss_pred EEEEEEeC
Q psy2166 139 YTCRAWNL 146 (805)
Q Consensus 139 Y~C~a~n~ 146 (805)
|.|.+...
T Consensus 84 YyCa~~~~ 91 (110)
T d2esvd1 84 YYCIVVRS 91 (110)
T ss_dssp EEEEEEES
T ss_pred EEEEEeCC
Confidence 99998654
|
| >d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.47 E-value=4.3e-07 Score=73.63 Aligned_cols=74 Identities=15% Similarity=0.258 Sum_probs=55.9
Q ss_pred cCCCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec------------CCCCceEEEecCcEEEEEEcccccCCC
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~ 136 (805)
..|..+.+.+|++|+|.|.... .....+.||+- ++.. ....++....+.....|+|.+++.+|+
T Consensus 6 QsP~~l~v~~G~svtl~C~~s~--~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DS 83 (107)
T d1kcvl1 6 QSPKSMGMSVGEAVTLNCKASE--NVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDD 83 (107)
T ss_dssp ESCSEEEEETTCCEEEEEEESS--CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CcCCEEeECCCCCEEEEEEecC--CcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCC
Confidence 3445678999999999999873 44456999972 2111 124577777777888999999999999
Q ss_pred eEEEEEEEeC
Q psy2166 137 GIYTCRAWNL 146 (805)
Q Consensus 137 G~Y~C~a~n~ 146 (805)
|.|.|.+...
T Consensus 84 a~YyCa~~~~ 93 (107)
T d1kcvl1 84 ADYYCGQSYS 93 (107)
T ss_dssp EEEEEEECSS
T ss_pred ceEEEEecCC
Confidence 9999987543
|
| >d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.46 E-value=3.8e-07 Score=73.65 Aligned_cols=74 Identities=15% Similarity=0.274 Sum_probs=55.5
Q ss_pred cCCCCceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------------CCCCceEEEecCcEEEEEEcccccCCC
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~ 136 (805)
..|..+.+.+|++|+|.|.... .....+.||| .|+.. ....|+....++..+.|+|.+++.+|+
T Consensus 6 Q~p~~l~~~~G~svtl~C~~s~--~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds 83 (107)
T d1mexl1 6 QSQKFMSTSLGNRVSVTCKASQ--NVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDL 83 (107)
T ss_dssp CCCSEEEECTTSCEEEEEEESS--CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred cCCCeEEECCCCCEEEEEEeCC--CCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecc
Confidence 3444578899999999999763 3344689997 22211 123578887777889999999999999
Q ss_pred eEEEEEEEeC
Q psy2166 137 GIYTCRAWNL 146 (805)
Q Consensus 137 G~Y~C~a~n~ 146 (805)
|.|.|.+...
T Consensus 84 A~YyCa~~~~ 93 (107)
T d1mexl1 84 AEYFCQQYNS 93 (107)
T ss_dssp SEEEEEECSS
T ss_pred eeEEEeECCC
Confidence 9999987543
|
| >d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.46 E-value=4.3e-07 Score=73.24 Aligned_cols=73 Identities=15% Similarity=0.244 Sum_probs=55.6
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec------------CCCCceEEEecCcEEEEEEcccccCCCe
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQG 137 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G 137 (805)
.|..+.+.+|++|+|.|.... .....+.||+- |+.. ....++....++..+.|.|.+++.+|+|
T Consensus 6 ~P~sl~~~~G~svtL~C~~~~--~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa 83 (106)
T d1op3k1 6 SPSTLSASVGDTITITCRASQ--SIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFA 83 (106)
T ss_dssp ECSEEEECTTCEEEEEEEESS--CCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCS
T ss_pred cCCeEEECCCCCEEEEEEeCC--CCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCC
Confidence 345688999999999999873 33446899982 2111 1234788877788889999999999999
Q ss_pred EEEEEEEeC
Q psy2166 138 IYTCRAWNL 146 (805)
Q Consensus 138 ~Y~C~a~n~ 146 (805)
.|.|.+...
T Consensus 84 ~YyCa~~~~ 92 (106)
T d1op3k1 84 TYHCQHYAG 92 (106)
T ss_dssp EEEEEEECS
T ss_pred cEeeeeCCC
Confidence 999987653
|
| >d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=1.2e-07 Score=75.88 Aligned_cols=83 Identities=7% Similarity=-0.029 Sum_probs=57.3
Q ss_pred CcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEE-EecCcEEEEEEcccccCCCeEEE
Q psy2166 62 TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT-TADFGFVTLDLTEVYDRDQGIYT 140 (805)
Q Consensus 62 ~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~-~~~~~~~~L~I~~~~~~D~G~Y~ 140 (805)
.+++|.+...+. ..|..|++|+|.|... .+...+.|+|+|........... ...+....+.|.+++.+|+|.|+
T Consensus 4 ~lpkPsLsa~P~--~~V~~G~~VTL~C~~~---~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~ 78 (99)
T d1ucta1 4 DFPMPFISAKSS--PVIPLDGSVKIQCQAI---REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQ 78 (99)
T ss_dssp GSCCCCEEESSC--SEEETTCCEEEEECCC---TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEE
T ss_pred CCCCCEEEecCC--CceeCCCeEEEEEcCC---CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEE
Confidence 457788877664 3688999999999876 66778999998742211111111 11122336899999999999999
Q ss_pred EEEEeCCee
Q psy2166 141 CRAWNLAGE 149 (805)
Q Consensus 141 C~a~n~~g~ 149 (805)
|...+....
T Consensus 79 C~y~~~~~~ 87 (99)
T d1ucta1 79 CQYRIGHYR 87 (99)
T ss_dssp EEEEETTTE
T ss_pred EEEECCCcc
Confidence 999887543
|
| >d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.45 E-value=3.7e-07 Score=73.38 Aligned_cols=72 Identities=24% Similarity=0.449 Sum_probs=54.3
Q ss_pred CCceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------------CCCCceEEEecCcEEEEEEcccccCCCeEE
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQGIY 139 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y 139 (805)
+.+.+.+|++|+|+|.... .....+.||| .|... ....++....+...+.|.|.+++.+|+|.|
T Consensus 6 ~sl~~~~G~svtl~C~~~~--~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y 83 (103)
T d8faba1 6 PSVSVSPGQTARITCSANA--LPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADY 83 (103)
T ss_dssp SEEEECTTSCEEEEEECTT--GGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEE
T ss_pred CeEEECCCCCEEEEEEeCC--CCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceE
Confidence 3678899999999999773 3344689998 22211 123467777777888999999999999999
Q ss_pred EEEEEeCC
Q psy2166 140 TCRAWNLA 147 (805)
Q Consensus 140 ~C~a~n~~ 147 (805)
.|.+....
T Consensus 84 yCA~~~~~ 91 (103)
T d8faba1 84 YCQAWDNS 91 (103)
T ss_dssp EEEEEETT
T ss_pred EeeecCCC
Confidence 99876543
|
| >d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.45 E-value=3.6e-07 Score=73.86 Aligned_cols=72 Identities=15% Similarity=0.319 Sum_probs=54.9
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec------------CCCCceEEEecCcEEEEEEcccccCCCeE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 138 (805)
|..+.+.+|++|+|+|... ......+.|||- |+.+ ....++....++..+.|+|.+++.+|+|.
T Consensus 8 P~sl~~~~G~svtL~C~~s--~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~ 85 (107)
T d1tjgl1 8 PSSLSASVGDRITITCRAS--QGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFAT 85 (107)
T ss_dssp CSEEEECTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred CCEEEECCCCCEEEEEEEC--CCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCce
Confidence 4467899999999999987 334557899982 2211 12347777777788999999999999999
Q ss_pred EEEEEEeC
Q psy2166 139 YTCRAWNL 146 (805)
Q Consensus 139 Y~C~a~n~ 146 (805)
|.|.+...
T Consensus 86 YyCa~~~~ 93 (107)
T d1tjgl1 86 YYCQQLHF 93 (107)
T ss_dssp EEEEECSB
T ss_pred EEEEECcC
Confidence 99976543
|
| >d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.43 E-value=4.5e-07 Score=73.00 Aligned_cols=72 Identities=13% Similarity=0.280 Sum_probs=53.0
Q ss_pred cCCCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec------------CCCCceEEEecCcEEEEEEcccccCCC
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~ 136 (805)
..|..+.+.+|++|+|+|..+ .....+.||+- ++.. ....++....++..++|.|.+++.+|+
T Consensus 5 QsP~~l~~~~G~~vtl~C~~s---~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds 81 (104)
T d1yqvl1 5 QSPAIMSASPGEKVTMTCSAS---SSVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDA 81 (104)
T ss_dssp EESSEEEECTTCCEEEEEEES---SCCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CcCCeEEECCCCCEEEEEEeC---CCCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccC
Confidence 334467899999999999876 23345799982 2111 123466777777888999999999999
Q ss_pred eEEEEEEEe
Q psy2166 137 GIYTCRAWN 145 (805)
Q Consensus 137 G~Y~C~a~n 145 (805)
|.|.|.+..
T Consensus 82 a~YyCa~~~ 90 (104)
T d1yqvl1 82 ATYYCQQWG 90 (104)
T ss_dssp EEEEEEECS
T ss_pred CeEEEEecC
Confidence 999997644
|
| >d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.43 E-value=4.7e-07 Score=73.12 Aligned_cols=70 Identities=20% Similarity=0.384 Sum_probs=53.9
Q ss_pred CCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEe---c---------CCCCceEEEecCcEEEEEEcccccCCCeEE
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKP---L---------ELGSRFKTTADFGFVTLDLTEVYDRDQGIY 139 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~---i---------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y 139 (805)
+.+.+.+|++|+|+|.... .....+.|||- |+. + ....++....++..+.|.|.+++.+|+|.|
T Consensus 8 ~s~~~~~G~svtL~C~~s~--~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Y 85 (106)
T d1lk3l1 8 PALTVSPGEKLTISCKASE--SVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIY 85 (106)
T ss_dssp SEEEECTTSCEEEEEEESS--CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred CeEEECCCCCEEEEEEeCC--CCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCc
Confidence 3688999999999999873 34457899972 211 1 123478888888888999999999999999
Q ss_pred EEEEEe
Q psy2166 140 TCRAWN 145 (805)
Q Consensus 140 ~C~a~n 145 (805)
.|.+..
T Consensus 86 yCa~~~ 91 (106)
T d1lk3l1 86 FCQQSW 91 (106)
T ss_dssp EEEECS
T ss_pred cccccc
Confidence 997643
|
| >d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor (against lysozyme) species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
Probab=98.43 E-value=6.3e-07 Score=72.89 Aligned_cols=74 Identities=15% Similarity=0.228 Sum_probs=55.7
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEE------CCEecCCCCceEEEec--CcEEEEEEcccccCCCeEEEEEEE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF------NGKPLELGSRFKTTAD--FGFVTLDLTEVYDRDQGIYTCRAW 144 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k------~g~~i~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~ 144 (805)
|..+.+.+|+.|+|.|...+.......+.||+ +...+..+.++....+ ...++|+|.+++.+|+|.|.|.+.
T Consensus 6 P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~ 85 (112)
T d1sq2n_ 6 PRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLG 85 (112)
T ss_dssp CSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred CCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEe
Confidence 44678889999999999864333456799998 2344555667766544 357799999999999999999875
Q ss_pred eC
Q psy2166 145 NL 146 (805)
Q Consensus 145 n~ 146 (805)
..
T Consensus 86 ~~ 87 (112)
T d1sq2n_ 86 VA 87 (112)
T ss_dssp BT
T ss_pred cC
Confidence 43
|
| >d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.43 E-value=3e-07 Score=76.51 Aligned_cols=77 Identities=14% Similarity=0.297 Sum_probs=57.1
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEE--CCEEcc----------------------CCCCeEEE-e
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY--NGKPIE----------------------ASHRIRTV-H 745 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g~~l~----------------------~~~~~~~~-~ 745 (805)
+|.+...|.++ .+.+|++++|.|.+. +.....+.|+| .|+.+. ...++... .
T Consensus 1 a~~~~~~P~~~-~~~~G~~vtL~C~~~--~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~ 77 (122)
T d1nezg_ 1 APELRIFPKKM-DAELGQKVDLVCEVL--GSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRD 77 (122)
T ss_dssp CCEEEEESSCE-EECTTCCEEEEEEEE--SCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEE
T ss_pred CCceEEcCCEE-EECCCCCEEEEEEEc--CccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECC
Confidence 47788888888 999999999999998 77777899997 122110 01133222 2
Q ss_pred eCcEEEEEEcCCCCCCCEEEEEEEE
Q psy2166 746 AFGMVVLEILGTKIEDTGVYTCRAT 770 (805)
Q Consensus 746 ~~~~~~L~i~~v~~~d~G~Y~C~a~ 770 (805)
++..++|+|.+++.+|+|.|.|.+.
T Consensus 78 ~~~~~~L~I~~~~~~Dsg~YyCa~~ 102 (122)
T d1nezg_ 78 TNNKYVLTLNKFSKENEGYYFCSVI 102 (122)
T ss_dssp TTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCEeEEEEcccccCCCEEEEeeEe
Confidence 2455789999999999999999875
|
| >d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.41 E-value=4.9e-07 Score=72.86 Aligned_cols=72 Identities=18% Similarity=0.170 Sum_probs=54.3
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEEC--C-EE-----------ccCCCCeEEEeeCcEEEEEEcCCCCCCCE
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN--G-KP-----------IEASHRIRTVHAFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g-~~-----------l~~~~~~~~~~~~~~~~L~i~~v~~~d~G 763 (805)
|..+ .+.+|++|+|.|... ......+.||+- | .+ -....++....++....|+|.++..+|+|
T Consensus 7 P~~l-~~~~G~svtl~C~~s--~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA 83 (106)
T d1a0ql1 7 PSSL-SASLGGKVTITCKAS--QDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIA 83 (106)
T ss_dssp CSEE-EECTTCCEEEEEEES--SCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCS
T ss_pred CCEE-EECCCCCEEEEEEcC--CCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCE
Confidence 3444 789999999999986 555557999981 1 11 11234666677777889999999999999
Q ss_pred EEEEEEEcC
Q psy2166 764 VYTCRATNK 772 (805)
Q Consensus 764 ~Y~C~a~N~ 772 (805)
.|.|.+.+.
T Consensus 84 ~YyCa~~~~ 92 (106)
T d1a0ql1 84 TYYCLQYYN 92 (106)
T ss_dssp EEEEEECSS
T ss_pred eEEEEEeCC
Confidence 999998654
|
| >d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.41 E-value=5.5e-07 Score=72.53 Aligned_cols=72 Identities=19% Similarity=0.199 Sum_probs=54.3
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEE--CCE------------EccCCCCeEEEeeCcEEEEEEcCCCCCCCE
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY--NGK------------PIEASHRIRTVHAFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g~------------~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G 763 (805)
|..+ .+.+|++++|.|... ..-...+.||| .|+ .-...+++.....+..+.|+|.++..+|+|
T Consensus 8 P~sl-sv~~G~svtl~C~~s--~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa 84 (106)
T d1i8ka_ 8 PASL-SVATGEKVTIRCMTS--TDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVG 84 (106)
T ss_dssp CSEE-ECCTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred CCEE-EECCCCCEEEEEEeC--CCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCE
Confidence 3444 799999999999986 55556799997 221 111345676666777889999999999999
Q ss_pred EEEEEEEcC
Q psy2166 764 VYTCRATNK 772 (805)
Q Consensus 764 ~Y~C~a~N~ 772 (805)
.|.|.+.+.
T Consensus 85 ~YyCa~~~~ 93 (106)
T d1i8ka_ 85 DYYCLQSFN 93 (106)
T ss_dssp EEEEEECSS
T ss_pred EEeEecCcc
Confidence 999987654
|
| >d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=98.40 E-value=8.6e-07 Score=72.25 Aligned_cols=73 Identities=21% Similarity=0.358 Sum_probs=54.7
Q ss_pred CCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec------------CCCCceEEEecCcEEEEEEcccccCCCeEE
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQGIY 139 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y 139 (805)
+.+.+.+|++|+|.|...........+.||+- +... ....|+....++..++|.|.+++.+|+|.|
T Consensus 8 ~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~Y 87 (111)
T d1rzfl1 8 PSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADY 87 (111)
T ss_dssp SEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEE
T ss_pred cceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcce
Confidence 36889999999999998632123446999972 2111 123477777778889999999999999999
Q ss_pred EEEEEeC
Q psy2166 140 TCRAWNL 146 (805)
Q Consensus 140 ~C~a~n~ 146 (805)
.|.+...
T Consensus 88 yCA~~~~ 94 (111)
T d1rzfl1 88 YCGTWDS 94 (111)
T ss_dssp EEEEEET
T ss_pred EEeecCC
Confidence 9988754
|
| >d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.40 E-value=7e-07 Score=71.95 Aligned_cols=72 Identities=17% Similarity=0.302 Sum_probs=53.6
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec------------CCCCceEEEecCcEEEEEEcccccCCCeE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 138 (805)
|..+.+.+|++|+|.|.... .....+.||+- |+.. ....++....++..++|+|.+++.+|+|.
T Consensus 8 P~~l~~~~G~svtL~C~~s~--~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~ 85 (108)
T d1jhll_ 8 PSYLVASPGETITINCRASK--SISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAM 85 (108)
T ss_dssp CSEEEECTTSCEEEEEEESS--CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSE
T ss_pred CCeEEecCCCCEEEEEEccC--CcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceE
Confidence 44678899999999999873 34456999982 2111 12235666777778899999999999999
Q ss_pred EEEEEEeC
Q psy2166 139 YTCRAWNL 146 (805)
Q Consensus 139 Y~C~a~n~ 146 (805)
|.|.+.+.
T Consensus 86 YyCA~~~~ 93 (108)
T d1jhll_ 86 YICQQHNE 93 (108)
T ss_dssp EEEEECSS
T ss_pred EEEeeCCC
Confidence 99987654
|
| >d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor 12Y-2 species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
Probab=98.40 E-value=1e-06 Score=72.03 Aligned_cols=74 Identities=16% Similarity=0.329 Sum_probs=55.3
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEE--CC----EecCCCCceEEEec--CcEEEEEEcccccCCCeEEEEEE
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NG----KPLELGSRFKTTAD--FGFVTLDLTEVYDRDQGIYTCRA 143 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g----~~i~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a 143 (805)
.|..+.+.+|++|+|+|..++.......+.||+ .| ..+....++....+ ...+.|+|.+++.+|+|.|.|.+
T Consensus 6 ~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~ 85 (113)
T d1vesa_ 6 TPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQA 85 (113)
T ss_dssp ECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred eCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeee
Confidence 344678899999999999874323445789997 22 23445567766554 35679999999999999999998
Q ss_pred Ee
Q psy2166 144 WN 145 (805)
Q Consensus 144 ~n 145 (805)
..
T Consensus 86 ~~ 87 (113)
T d1vesa_ 86 FY 87 (113)
T ss_dssp EE
T ss_pred ec
Confidence 54
|
| >d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Polymeric-immunoglobulin receptor, PIGR species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=3.3e-07 Score=75.99 Aligned_cols=88 Identities=14% Similarity=0.200 Sum_probs=57.7
Q ss_pred CCCceecCCCcEEEEEEEecC-CCCCceEEEEECC--Eec------------CCCCceEEE--ecCcEEEEEEcccccCC
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPK-NDPNLKIEWIFNG--KPL------------ELGSRFKTT--ADFGFVTLDLTEVYDRD 135 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~-~~p~~~v~W~k~g--~~i------------~~~~~~~~~--~~~~~~~L~I~~~~~~D 135 (805)
|..+.+.+|++|+|+|..... ......+.|+|.. ..+ ....++.+. ...+..+|+|.+++.+|
T Consensus 6 P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~D 85 (116)
T d1xeda_ 6 PEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDD 85 (116)
T ss_dssp CSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred CCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCC
Confidence 346788899999999987521 1123457898832 111 112344443 34567899999999999
Q ss_pred CeEEEEEEEeCCeeEEEEEEEEEec
Q psy2166 136 QGIYTCRAWNLAGETFTSTTIYCST 160 (805)
Q Consensus 136 ~G~Y~C~a~n~~g~~~~~~~l~V~~ 160 (805)
+|.|.|.+............|+|..
T Consensus 86 sG~Y~C~v~~~~~~~~~~v~L~V~~ 110 (116)
T d1xeda_ 86 SGRYKCGLGINSRGLSFDVSLEVLE 110 (116)
T ss_dssp CEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred CEEEEEEEEcCCCCceEeEEEEEEC
Confidence 9999999865433334456677654
|
| >d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Programmed cell death protein 1, PD1, extracellular domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.39 E-value=1e-06 Score=72.25 Aligned_cols=75 Identities=23% Similarity=0.298 Sum_probs=53.6
Q ss_pred cCCcccccCCCCeEEEEEEEeecCCCCeEEEEEE--CCE-------------EccCCCCeEEEee--CcEEEEEEcCCCC
Q psy2166 697 EFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY--NGK-------------PIEASHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 697 ~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g~-------------~l~~~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.|..+ .+.+|++|+|.|.+.. ......+.||| .|+ ......++.+..+ ...+.|.|.++..
T Consensus 5 sP~~l-~v~~G~~vtl~C~~~~-~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 82 (114)
T d3bp5a1 5 YPAWL-TVSEGANATFTCSLSN-WSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRR 82 (114)
T ss_dssp ESSEE-EEETTCCEEEEEEESC-CCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCG
T ss_pred CCCeE-EECCCCCEEEEEEECC-CCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCc
Confidence 34555 8999999999999861 23446789998 221 1123356665443 3567899999999
Q ss_pred CCCEEEEEEEEcCC
Q psy2166 760 EDTGVYTCRATNKW 773 (805)
Q Consensus 760 ~d~G~Y~C~a~N~~ 773 (805)
+|+|.|.|.+....
T Consensus 83 ~Dsg~YyCa~~~~~ 96 (114)
T d3bp5a1 83 NDSGIYLCGAISLH 96 (114)
T ss_dssp GGCEEEEEEEECSS
T ss_pred CCCeEEEEEEEeCC
Confidence 99999999987654
|
| >d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.38 E-value=6.2e-07 Score=73.57 Aligned_cols=74 Identities=22% Similarity=0.356 Sum_probs=52.9
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEE--CCE---Ec---------cCCCCeEE--EeeCcEEEEEEcCCCCCC
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY--NGK---PI---------EASHRIRT--VHAFGMVVLEILGTKIED 761 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g~---~l---------~~~~~~~~--~~~~~~~~L~i~~v~~~d 761 (805)
|.++ .+.+|++++|.|.+. +.....+.||| -|+ .+ ....++.. ........|+|.++..+|
T Consensus 7 P~~v-~v~~G~sv~L~C~~s--~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D 83 (113)
T d2bnqd1 7 PAAL-SVPEGENLVLNCSFT--DSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPGD 83 (113)
T ss_dssp SSEE-EEETTCCEEEEEEES--CCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred CCEE-EEcCCCCEEEEEEEe--cCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCCC
Confidence 4445 889999999999997 66777899998 111 10 01123332 223457899999999999
Q ss_pred CEEEEEEEEcCCc
Q psy2166 762 TGVYTCRATNKWG 774 (805)
Q Consensus 762 ~G~Y~C~a~N~~G 774 (805)
+|.|.|.+....|
T Consensus 84 sg~YyCa~~~~~~ 96 (113)
T d2bnqd1 84 SATYLCAVRPTSG 96 (113)
T ss_dssp CEEEEEEEEESSS
T ss_pred CcEEeEeEecCCC
Confidence 9999999975544
|
| >d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.36 E-value=6e-07 Score=73.88 Aligned_cols=76 Identities=16% Similarity=0.258 Sum_probs=52.8
Q ss_pred cCCCCceecCCCcEEEEEEEecCCCCCceEEEEE--CCEecC-------------CCCce--EEEecCcEEEEEEccccc
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPLE-------------LGSRF--KTTADFGFVTLDLTEVYD 133 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i~-------------~~~~~--~~~~~~~~~~L~I~~~~~ 133 (805)
..+..+.+.+|++|+|.|.... ......+.||| .|..+. ...++ .....+..++|.|.+++.
T Consensus 5 Q~~~~v~v~~G~~VtL~C~~~~-~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 83 (114)
T d2ak4d1 5 QAQTEISVVEKEDVTLDCVYET-RDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQV 83 (114)
T ss_dssp CCCCEEEEETTCCEEECCEEEC-SCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred ecCCeEEEeCCCCEEEEEEEcC-CCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeeccccc
Confidence 3455678999999999998763 23445688998 232211 01122 333445678999999999
Q ss_pred CCCeEEEEEEEeCC
Q psy2166 134 RDQGIYTCRAWNLA 147 (805)
Q Consensus 134 ~D~G~Y~C~a~n~~ 147 (805)
+|+|.|.|.+....
T Consensus 84 ~Dsg~YyCa~~~~~ 97 (114)
T d2ak4d1 84 VDSAVYFCALSGFY 97 (114)
T ss_dssp GGCEEEEEEEECSB
T ss_pred ccCCCceEeCCCCC
Confidence 99999999887653
|
| >d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=98.36 E-value=8.6e-07 Score=72.99 Aligned_cols=76 Identities=14% Similarity=0.138 Sum_probs=55.1
Q ss_pred cCCCCceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec---------------CCCCceEEEec--CcEEEEEEccc
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL---------------ELGSRFKTTAD--FGFVTLDLTEV 131 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i---------------~~~~~~~~~~~--~~~~~L~I~~~ 131 (805)
..++.+.+.+|++|+|.|..... .....+.||| .|+.. ...+|+.+..+ ...++|+|.++
T Consensus 5 Q~p~~~~~~~G~~vtL~C~~~~~-~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (116)
T d1tvda_ 5 QSSPDQTVASGSEVVLLCTYDTV-YSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPV 83 (116)
T ss_dssp CCSCCEEEETTCCEEECCEEECC-SSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSC
T ss_pred ccCCCEEEcCCCCEEEEEEEcCC-ccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCc
Confidence 44557889999999999998632 3456799997 22211 02247766543 45678999999
Q ss_pred ccCCCeEEEEEEEeCC
Q psy2166 132 YDRDQGIYTCRAWNLA 147 (805)
Q Consensus 132 ~~~D~G~Y~C~a~n~~ 147 (805)
+.+|+|.|.|.+....
T Consensus 84 ~~~Dsg~YyCa~~~~~ 99 (116)
T d1tvda_ 84 RTEDSATYYCAFTLPP 99 (116)
T ss_dssp CGGGCEEEEEEEECTT
T ss_pred cccccccceeeEecCC
Confidence 9999999999887643
|
| >d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=7.6e-07 Score=73.05 Aligned_cols=76 Identities=18% Similarity=0.302 Sum_probs=55.7
Q ss_pred eeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEEC----CE-Ec---------------cCCCCeEEEeeCcEEEEE
Q psy2166 694 FTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN----GK-PI---------------EASHRIRTVHAFGMVVLE 753 (805)
Q Consensus 694 ~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~----g~-~l---------------~~~~~~~~~~~~~~~~L~ 753 (805)
+...|.+. ++.+|++|+|.|.+.. ......+.|+|- +. .+ ....++.....+....|+
T Consensus 3 ~~~sP~~~-t~~~G~~vtL~C~~~~-~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~ 80 (114)
T d1akjd_ 3 FRVSPLDR-TWNLGETVELKCQVLL-SNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLT 80 (114)
T ss_dssp EEEECCSC-CCCTTCCEEEEEEECC-SSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEE
T ss_pred eeECCCcE-eccCCCcEEEEEEeCC-CcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcE
Confidence 34456677 8999999999999862 234457999981 11 00 112456666677788999
Q ss_pred EcCCCCCCCEEEEEEEEc
Q psy2166 754 ILGTKIEDTGVYTCRATN 771 (805)
Q Consensus 754 i~~v~~~d~G~Y~C~a~N 771 (805)
|.+++.+|+|.|.|.+..
T Consensus 81 I~~l~~~Dsg~YyCa~~~ 98 (114)
T d1akjd_ 81 LSDFRRENEGYYFCSALS 98 (114)
T ss_dssp ESSCCGGGCEEEEEEEEE
T ss_pred EccCCCCCCEEEeEeEcC
Confidence 999999999999999864
|
| >d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: Vascular cell adhesion molecule-1 (VCAM-1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=4.2e-07 Score=74.12 Aligned_cols=93 Identities=12% Similarity=0.112 Sum_probs=58.8
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCC--cEEEEEECCEEccCCCceEEE-eeC---CEEEEEEccCCCCCCE
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPD--LVVEWFYNGKKLPHGHRYRTF-HDF---GIVILDILYCYEENSG 567 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~--~~v~W~~~g~~l~~~~~~~~~-~~~---~~~~L~i~~v~~~d~G 567 (805)
..|.+.... .+.+|+.++|+|.+.+ +.|. +.++|+++++.+......... ..+ ..+.|.+.....+|..
T Consensus 3 ~~P~I~~~~----~l~~G~~~~l~C~v~~-~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~ 77 (109)
T d1vcaa1 3 KDPEIHLSG----PLEAGKPITVKCSVAD-VYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGK 77 (109)
T ss_dssp SCCEEEESS----CEETTSCEEEEEEEEE-EBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTC
T ss_pred CCCEEecCC----CccCCCeEEEEeEeCC-cCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCc
Confidence 446665432 2789999999999997 6774 479999999987421110000 111 1345777754445555
Q ss_pred EEEEEEEcCCcce-------EEEEEEEEeee
Q psy2166 568 VYECRATNKYGSD-------VTKASLKCVSK 591 (805)
Q Consensus 568 ~Y~C~a~n~~g~~-------~~~~~l~V~~~ 591 (805)
.|+|+|+|..+.. .....|.|...
T Consensus 78 ~ltC~a~~~~~~~~~~~~~~~t~~~L~V~~~ 108 (109)
T d1vcaa1 78 VLVCRAKLHIDEMDSVPTVRQAVKELQVYIS 108 (109)
T ss_dssp EEEEEEEECSCCCTTSCSEEEEEEECCEECC
T ss_pred EEEEEEEcCcCCccccccccceeEEeEEEeC
Confidence 9999999886552 33455777654
|
| >d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
Probab=98.34 E-value=8.5e-07 Score=71.93 Aligned_cols=75 Identities=19% Similarity=0.321 Sum_probs=55.4
Q ss_pred cCCCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEe---c---------CCCCceEEEecCcEEEEEEcccccCCC
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKP---L---------ELGSRFKTTADFGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~---i---------~~~~~~~~~~~~~~~~L~I~~~~~~D~ 136 (805)
..|..+.+.+|++|+|.|.... ......+.||+- |.. | ....++....++..+.|+|.+++.+|+
T Consensus 6 Q~P~~~~v~~G~tv~l~C~~~~-~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Ds 84 (108)
T d2fx7l1 6 QSPGTQSLSPGERATLSCRASQ-SVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDF 84 (108)
T ss_dssp CSSSEEEECTTCCEEEEEEESS-CCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred eeCCeEEECCCCCEEEEEEeec-CCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheeccc
Confidence 3344678899999999999763 123456899982 321 1 123477777777888999999999999
Q ss_pred eEEEEEEEeC
Q psy2166 137 GIYTCRAWNL 146 (805)
Q Consensus 137 G~Y~C~a~n~ 146 (805)
|.|.|.+...
T Consensus 85 a~YyCa~~~~ 94 (108)
T d2fx7l1 85 AVYYCQQYGQ 94 (108)
T ss_dssp SEEEEEECSS
T ss_pred EEEeeecCCC
Confidence 9999987543
|
| >d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=7.7e-07 Score=73.01 Aligned_cols=72 Identities=21% Similarity=0.325 Sum_probs=54.1
Q ss_pred CCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEe---c---------------CCCCceEEEecCcEEEEEEccccc
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKP---L---------------ELGSRFKTTADFGFVTLDLTEVYD 133 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~---i---------------~~~~~~~~~~~~~~~~L~I~~~~~ 133 (805)
....+.+|++|+|+|.+... .....+.|+|- |.. + ....|+.....+..+.|+|.+++.
T Consensus 8 ~~~t~~~G~~vtL~C~~~~~-~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~l~~ 86 (114)
T d1akjd_ 8 LDRTWNLGETVELKCQVLLS-NPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTLSDFRR 86 (114)
T ss_dssp CSCCCCTTCCEEEEEEECCS-SCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEESSCCG
T ss_pred CcEeccCCCcEEEEEEeCCC-cCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEEccCCC
Confidence 36789999999999998742 33456899982 111 1 012467777777788999999999
Q ss_pred CCCeEEEEEEEeC
Q psy2166 134 RDQGIYTCRAWNL 146 (805)
Q Consensus 134 ~D~G~Y~C~a~n~ 146 (805)
+|+|.|.|.+...
T Consensus 87 ~Dsg~YyCa~~~~ 99 (114)
T d1akjd_ 87 ENEGYYFCSALSN 99 (114)
T ss_dssp GGCEEEEEEEEET
T ss_pred CCCEEEeEeEcCC
Confidence 9999999998754
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=2.2e-07 Score=74.05 Aligned_cols=76 Identities=17% Similarity=0.259 Sum_probs=52.0
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEECCE--EccCC------------CCeEEE---eeCcEEEEEEcCCCCCCCEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYNGK--PIEAS------------HRIRTV---HAFGMVVLEILGTKIEDTGVY 765 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~--~l~~~------------~~~~~~---~~~~~~~L~i~~v~~~d~G~Y 765 (805)
...+|++|+|.|... ......+.|++... .+... +|+... .+.+.++|+|.+++.+|+|.|
T Consensus 5 ~~~~G~svtL~C~~s--~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y 82 (97)
T d2nxyb1 5 LGKKGDTVELTCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 82 (97)
T ss_dssp EEETTSCEEECCBCS--SSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred EEEcCCcEEEEEEEe--cCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEE
Confidence 678999999999987 66777899998432 11111 122111 122346799999999999999
Q ss_pred EEEEEcCCccEEEEEEEEE
Q psy2166 766 TCRATNKWGQAEISVNLEC 784 (805)
Q Consensus 766 ~C~a~N~~G~~~~~~~l~V 784 (805)
.|.+.| .+..++|.|
T Consensus 83 ~C~v~~----~~~~v~L~V 97 (97)
T d2nxyb1 83 ICEVED----QKEEVQLLV 97 (97)
T ss_dssp EEEETT----EEEEEEEEE
T ss_pred EEEEec----CCeEEEEEC
Confidence 999966 345555554
|
| >d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.33 E-value=1.2e-06 Score=70.86 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=53.9
Q ss_pred CcccccCCCCeEEEEEEEeecCCCCeEEEEEEC--C---EEc---------cCCCCeEEEeeCcEEEEEEcCCCCCCCEE
Q psy2166 699 QHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN--G---KPI---------EASHRIRTVHAFGMVVLEILGTKIEDTGV 764 (805)
Q Consensus 699 ~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g---~~l---------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 764 (805)
..+ .+.+|++|+|.|... ......+.||+- | +.+ ....++....+.....|+|.++..+|+|.
T Consensus 9 ~~l-~v~~G~svtl~C~~s--~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~ 85 (107)
T d1kcvl1 9 KSM-GMSVGEAVTLNCKAS--ENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDAD 85 (107)
T ss_dssp SEE-EEETTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred CEE-eECCCCCEEEEEEec--CCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCce
Confidence 344 789999999999987 555567999982 1 111 12356666777788899999999999999
Q ss_pred EEEEEEcC
Q psy2166 765 YTCRATNK 772 (805)
Q Consensus 765 Y~C~a~N~ 772 (805)
|.|.+...
T Consensus 86 YyCa~~~~ 93 (107)
T d1kcvl1 86 YYCGQSYS 93 (107)
T ss_dssp EEEEECSS
T ss_pred EEEEecCC
Confidence 99987543
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.33 E-value=6.8e-07 Score=74.53 Aligned_cols=87 Identities=18% Similarity=0.256 Sum_probs=54.8
Q ss_pred CCcccccCCCCeEEEEEEEeecC--CCCeEEEEEEC--C-------------EEcc-C----CCCeEEEee--CcEEEEE
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVG--DQTMTVEFLYN--G-------------KPIE-A----SHRIRTVHA--FGMVVLE 753 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g--~p~~~v~W~~~--g-------------~~l~-~----~~~~~~~~~--~~~~~L~ 753 (805)
+.++ .+..|++++|.|...... .....|.|+|. + .... . .+|+.+..+ .+...|+
T Consensus 6 p~~v-~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 84 (119)
T d1neua_ 6 DREV-YGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIV 84 (119)
T ss_dssp CSEE-EEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEE
T ss_pred CCeE-EEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEE
Confidence 4455 889999999999976211 23348999872 1 1111 0 134443222 3346799
Q ss_pred EcCCCCCCCEEEEEEEEcCCc--cEEEEEEEEEE
Q psy2166 754 ILGTKIEDTGVYTCRATNKWG--QAEISVNLECV 785 (805)
Q Consensus 754 i~~v~~~d~G~Y~C~a~N~~G--~~~~~~~l~V~ 785 (805)
|.+++.+|+|.|.|.+.|.-+ .....++|.|.
T Consensus 85 I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~ 118 (119)
T d1neua_ 85 IHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF 118 (119)
T ss_dssp ECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred ECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence 999999999999999998654 34445666664
|
| >d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.33 E-value=7e-07 Score=73.47 Aligned_cols=75 Identities=15% Similarity=0.175 Sum_probs=51.4
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEE--CCE---Ecc----------CCCCe--EEEeeCcEEEEEEcCCCCC
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY--NGK---PIE----------ASHRI--RTVHAFGMVVLEILGTKIE 760 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g~---~l~----------~~~~~--~~~~~~~~~~L~i~~v~~~ 760 (805)
+.++ .+.+|++|+|.|... .......+.||| .|. .+. ...+. ......+.+.|+|.+++.+
T Consensus 7 ~~~v-~v~~G~~VtL~C~~~-~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 84 (114)
T d2ak4d1 7 QTEI-SVVEKEDVTLDCVYE-TRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVV 84 (114)
T ss_dssp CCEE-EEETTCCEEECCEEE-CSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred CCeE-EEeCCCCEEEEEEEc-CCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccc
Confidence 3444 789999999999876 233456789998 221 110 01122 2233355788999999999
Q ss_pred CCEEEEEEEEcCCc
Q psy2166 761 DTGVYTCRATNKWG 774 (805)
Q Consensus 761 d~G~Y~C~a~N~~G 774 (805)
|+|.|.|.+....+
T Consensus 85 Dsg~YyCa~~~~~~ 98 (114)
T d2ak4d1 85 DSAVYFCALSGFYN 98 (114)
T ss_dssp GCEEEEEEEECSBT
T ss_pred cCCCceEeCCCCCC
Confidence 99999999887654
|
| >d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.33 E-value=8.5e-07 Score=71.53 Aligned_cols=72 Identities=18% Similarity=0.382 Sum_probs=54.2
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec------------CCCCceEEEecCcEEEEEEcccccCCCeE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 138 (805)
++.+.+.+|++|+|+|.... .....+.||+- |+.. ....++....++..++|.|.+++.+|+|.
T Consensus 7 p~sl~~~~G~svtl~C~~~~--~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsav 84 (109)
T d1w72l1 7 PPSVSVAPGQTARITCGGNN--IGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEAD 84 (109)
T ss_dssp CSEEEECTTSCEEEEEECTT--GGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred CCeEEECCCCCEEEEEEcCC--CCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEE
Confidence 33678899999999999762 33446899972 3211 12346777777788899999999999999
Q ss_pred EEEEEEeC
Q psy2166 139 YTCRAWNL 146 (805)
Q Consensus 139 Y~C~a~n~ 146 (805)
|.|.+...
T Consensus 85 YyCA~~~~ 92 (109)
T d1w72l1 85 YYCQVWDS 92 (109)
T ss_dssp EEEEEEET
T ss_pred EEEEecCC
Confidence 99998754
|
| >d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: NK cell activating receptor NKP44 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=2.6e-06 Score=69.20 Aligned_cols=73 Identities=27% Similarity=0.422 Sum_probs=51.2
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEEC--CEe---c---------CCCCceEEEe--cCcEEEEEEcccccCCCeE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKP---L---------ELGSRFKTTA--DFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~---i---------~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~ 138 (805)
.+.+.+|++|+|+|...........+.|+|. +.. + ....|+.+.. +.+.++|.|.+++.+|+|.
T Consensus 5 ~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~ 84 (108)
T d1hkfa_ 5 VLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGH 84 (108)
T ss_dssp EEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred EEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEE
Confidence 4678899999999987632233446789982 211 1 1223555433 4578899999999999999
Q ss_pred EEEEEEeCC
Q psy2166 139 YTCRAWNLA 147 (805)
Q Consensus 139 Y~C~a~n~~ 147 (805)
|.|.+....
T Consensus 85 Y~C~v~~~~ 93 (108)
T d1hkfa_ 85 YWCRIYRPS 93 (108)
T ss_dssp EEEEEECTT
T ss_pred EEEEEecCC
Confidence 999987553
|
| >d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
Probab=98.32 E-value=1.2e-06 Score=71.54 Aligned_cols=74 Identities=15% Similarity=0.284 Sum_probs=53.8
Q ss_pred CCCCceecCCCcEEEEEEEecC----CCCCceEEEEEC--CEec------------CCCCceEEEecCcEEEEEEccccc
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPK----NDPNLKIEWIFN--GKPL------------ELGSRFKTTADFGFVTLDLTEVYD 133 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~----~~p~~~v~W~k~--g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~ 133 (805)
.|..+.+.+|++|+|.|..+.. ......+.|||. |+.+ ....++....++..+.|.|.+++.
T Consensus 7 ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~ 86 (113)
T d1q9ra1 7 SPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQA 86 (113)
T ss_dssp ECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred cCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEeccccc
Confidence 3456789999999999987621 112235899982 3211 123477777777888999999999
Q ss_pred CCCeEEEEEEEe
Q psy2166 134 RDQGIYTCRAWN 145 (805)
Q Consensus 134 ~D~G~Y~C~a~n 145 (805)
+|+|.|.|.+..
T Consensus 87 ~Dsa~YyCA~~~ 98 (113)
T d1q9ra1 87 EDLAVYYCKQSY 98 (113)
T ss_dssp GGCEEEEEEECS
T ss_pred CCCeEEEecccC
Confidence 999999998754
|
| >d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD4 V-set domains species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=4.2e-07 Score=72.38 Aligned_cols=68 Identities=16% Similarity=0.285 Sum_probs=47.9
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEECCEe--cC------------CCCceEEEe---cCcEEEEEEcccccCCCeE
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKP--LE------------LGSRFKTTA---DFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~--i~------------~~~~~~~~~---~~~~~~L~I~~~~~~D~G~ 138 (805)
+...+|++|+|+|... ......+.|++.... +. ...|+.... +.+..+|.|.+++.+|+|.
T Consensus 4 V~~~~G~svtL~C~~s--~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~ 81 (97)
T d2nxyb1 4 VLGKKGDTVELTCTAS--QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDT 81 (97)
T ss_dssp EEEETTSCEEECCBCS--SSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEE
T ss_pred EEEEcCCcEEEEEEEe--cCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEE
Confidence 4567999999999987 456678999985321 11 112333221 2245689999999999999
Q ss_pred EEEEEEe
Q psy2166 139 YTCRAWN 145 (805)
Q Consensus 139 Y~C~a~n 145 (805)
|.|.+.+
T Consensus 82 Y~C~v~~ 88 (97)
T d2nxyb1 82 YICEVED 88 (97)
T ss_dssp EEEEETT
T ss_pred EEEEEec
Confidence 9999954
|
| >d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.32 E-value=9.9e-07 Score=70.84 Aligned_cols=72 Identities=18% Similarity=0.114 Sum_probs=53.9
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEE--CCE------------EccCCCCeEEEeeCcEEEEEEcCCCCCCCE
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY--NGK------------PIEASHRIRTVHAFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g~------------~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G 763 (805)
|.++ .+.+|++++|.|... ......+.||| .|+ .....+++.....+....|.|.+++.+|+|
T Consensus 8 P~s~-~~~~G~svtl~C~~s--~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa 84 (107)
T d1c5cl1 8 PSSL-SASLGERVSLTCRTS--QEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFA 84 (107)
T ss_dssp CSEE-EECTTCCEEEEEEES--SCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred CCEE-EECCCCCEEEEEEeC--CCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCe
Confidence 3344 789999999999987 66666799998 221 111234565566667789999999999999
Q ss_pred EEEEEEEcC
Q psy2166 764 VYTCRATNK 772 (805)
Q Consensus 764 ~Y~C~a~N~ 772 (805)
.|.|.+.+.
T Consensus 85 ~YyCa~~~~ 93 (107)
T d1c5cl1 85 DYYCLQYAS 93 (107)
T ss_dssp EEEEEECSS
T ss_pred EEEEecCcC
Confidence 999987654
|
| >d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.32 E-value=1.1e-06 Score=72.00 Aligned_cols=75 Identities=19% Similarity=0.351 Sum_probs=53.5
Q ss_pred cCCCCceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------------CCCCceEEE--ecCcEEEEEEcccccC
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------------ELGSRFKTT--ADFGFVTLDLTEVYDR 134 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------------~~~~~~~~~--~~~~~~~L~I~~~~~~ 134 (805)
..|..+.+.+|+.|+|+|... +.....+.||| .|+.. ...+++... .....++|+|.+++.+
T Consensus 5 Q~P~~v~v~~G~sv~L~C~~s--~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 82 (113)
T d2bnqd1 5 QIPAALSVPEGENLVLNCSFT--DSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG 82 (113)
T ss_dssp CSSSEEEEETTCCEEEEEEES--CCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred eeCCEEEEcCCCCEEEEEEEe--cCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCC
Confidence 334567899999999999987 34556789998 22211 012244333 2356789999999999
Q ss_pred CCeEEEEEEEeCC
Q psy2166 135 DQGIYTCRAWNLA 147 (805)
Q Consensus 135 D~G~Y~C~a~n~~ 147 (805)
|+|.|.|.+....
T Consensus 83 Dsg~YyCa~~~~~ 95 (113)
T d2bnqd1 83 DSATYLCAVRPTS 95 (113)
T ss_dssp GCEEEEEEEEESS
T ss_pred CCcEEeEeEecCC
Confidence 9999999997653
|
| >d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.31 E-value=1.3e-06 Score=70.41 Aligned_cols=71 Identities=20% Similarity=0.356 Sum_probs=54.4
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec------------CCCCceEEEecCcEEEEEEcccccCCCeE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 138 (805)
|..+.+.+|++|+|+|... ......+.||+. +... ....|+....++..++|.|.+++.+|+|.
T Consensus 8 P~sl~~~~G~svtl~C~~s--~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~ 85 (107)
T d1d5il1 8 PSSMYASLGERVTITCKAS--QDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGI 85 (107)
T ss_dssp CSEEEECTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred CCEEEECCCCCEEEEEEcC--CCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEE
Confidence 4467889999999999987 344557899972 2211 12347887777788899999999999999
Q ss_pred EEEEEEe
Q psy2166 139 YTCRAWN 145 (805)
Q Consensus 139 Y~C~a~n 145 (805)
|.|.+..
T Consensus 86 YyCa~~~ 92 (107)
T d1d5il1 86 YYCLQYD 92 (107)
T ss_dssp EEEEECS
T ss_pred EEeeecc
Confidence 9998654
|
| >d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Polymeric-immunoglobulin receptor, PIGR species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=5.7e-07 Score=74.52 Aligned_cols=86 Identities=17% Similarity=0.210 Sum_probs=57.9
Q ss_pred CCcccccCCCCeEEEEEEEeecCC---CCeEEEEEECC--E---Ec---------cCCCCeEE--EeeCcEEEEEEcCCC
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGD---QTMTVEFLYNG--K---PI---------EASHRIRT--VHAFGMVVLEILGTK 758 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~---p~~~v~W~~~g--~---~l---------~~~~~~~~--~~~~~~~~L~i~~v~ 758 (805)
|.++ .+.+|++|+|.|... .. ....+.|+|.. . .+ ....++.+ ....+...|+|.+++
T Consensus 6 P~~V-~~~~G~svtL~C~y~--~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~ 82 (116)
T d1xeda_ 6 PEEV-NSVEGNSVSITCYYP--PTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLS 82 (116)
T ss_dssp CSEE-EEETTCCEEEEEECC--CCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCEE-EEcCCCCEEEEEEEC--CCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhC
Confidence 3444 888999999999975 22 23467898832 1 11 11233433 334567899999999
Q ss_pred CCCCEEEEEEEEcCCccEEEEEEEEEEE
Q psy2166 759 IEDTGVYTCRATNKWGQAEISVNLECVV 786 (805)
Q Consensus 759 ~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 786 (805)
.+|+|.|.|.+..........+.|+|..
T Consensus 83 ~~DsG~Y~C~v~~~~~~~~~~v~L~V~~ 110 (116)
T d1xeda_ 83 QDDSGRYKCGLGINSRGLSFDVSLEVLE 110 (116)
T ss_dssp GGGCEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred cCCCEEEEEEEEcCCCCceEeEEEEEEC
Confidence 9999999999875554555567777754
|
| >d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Myelin membrane adhesion molecule P0 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.31 E-value=7.1e-07 Score=74.42 Aligned_cols=89 Identities=15% Similarity=0.265 Sum_probs=57.0
Q ss_pred cCCCCceecCCCcEEEEEEEecC--CCCCceEEEEEC--CE----ec----------C----CCCceEEEec--CcEEEE
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPK--NDPNLKIEWIFN--GK----PL----------E----LGSRFKTTAD--FGFVTL 126 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~--~~p~~~v~W~k~--g~----~i----------~----~~~~~~~~~~--~~~~~L 126 (805)
..+..+.+..|++|+|+|..... ......|.|+|. +. .+ . ..+|+.+..+ .+..+|
T Consensus 4 ~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL 83 (119)
T d1neua_ 4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSI 83 (119)
T ss_dssp ECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCE
T ss_pred cCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEE
Confidence 34446889999999999997632 234458999872 11 11 0 1134554322 344689
Q ss_pred EEcccccCCCeEEEEEEEeCCe--eEEEEEEEEEe
Q psy2166 127 DLTEVYDRDQGIYTCRAWNLAG--ETFTSTTIYCS 159 (805)
Q Consensus 127 ~I~~~~~~D~G~Y~C~a~n~~g--~~~~~~~l~V~ 159 (805)
.|.+++.+|+|.|.|.+.+..+ .......|.|.
T Consensus 84 ~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~ 118 (119)
T d1neua_ 84 VIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF 118 (119)
T ss_dssp EECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred EECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence 9999999999999999987533 23444556553
|
| >d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.30 E-value=1.2e-06 Score=70.68 Aligned_cols=68 Identities=18% Similarity=0.172 Sum_probs=51.7
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEE--CCE------------EccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLY--NGK------------PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g~------------~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
.+.+|++++|.|... ..-...+.||| .|+ .-....++....++..+.|+|.++..+|+|.|.|.
T Consensus 12 ~~~~G~svtl~C~~s--~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa 89 (107)
T d1mexl1 12 STSLGNRVSVTCKAS--QNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEYFCQ 89 (107)
T ss_dssp EECTTSCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred EECCCCCEEEEEEeC--CCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeEEEe
Confidence 789999999999986 44445789998 111 11123567766777788999999999999999998
Q ss_pred EEcC
Q psy2166 769 ATNK 772 (805)
Q Consensus 769 a~N~ 772 (805)
+.+.
T Consensus 90 ~~~~ 93 (107)
T d1mexl1 90 QYNS 93 (107)
T ss_dssp ECSS
T ss_pred ECCC
Confidence 6543
|
| >d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.30 E-value=7.9e-07 Score=73.19 Aligned_cols=86 Identities=15% Similarity=0.165 Sum_probs=55.8
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEE--CCEe---cC------------CCCceEEEecCcEEEEEEcccccC
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKP---LE------------LGSRFKTTADFGFVTLDLTEVYDR 134 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~---i~------------~~~~~~~~~~~~~~~L~I~~~~~~ 134 (805)
.+..+.+.+|++|+|.|.... .....+.||| .|.. +. ...++.....+..+.|+|.+++.+
T Consensus 6 ~~~~v~v~~G~svtl~C~~~~--~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 83 (115)
T d1i9ea_ 6 PDARVTVSEGASLQLRCKYSY--SATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWS 83 (115)
T ss_dssp CCSEEEEETTSCEEECCEEEC--SSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGG
T ss_pred CCCeEEECCCCCEEEEEEEcC--CCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccccc
Confidence 444678999999999999873 3345788997 2321 10 011223333445668999999999
Q ss_pred CCeEEEEEEEeCCeeEE--EEEEEEEe
Q psy2166 135 DQGIYTCRAWNLAGETF--TSTTIYCS 159 (805)
Q Consensus 135 D~G~Y~C~a~n~~g~~~--~~~~l~V~ 159 (805)
|+|.|.|.+........ ..+.|+|.
T Consensus 84 Dsg~YyCa~~~~~~~~~FG~GT~L~V~ 110 (115)
T d1i9ea_ 84 DSAVYFCAVSGFASALTFGSGTKVIVL 110 (115)
T ss_dssp GCEEEEEEEEETTEEEEECCCEEEEEE
T ss_pred ccceecccccCCCCCCEECCCEEEEEe
Confidence 99999998865432211 23556664
|
| >d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.30 E-value=1.5e-06 Score=70.19 Aligned_cols=73 Identities=15% Similarity=0.275 Sum_probs=54.1
Q ss_pred CceecCCCcEEEEEEEecCCC-CCceEEEEE--CCEec------------CCCCceEEEecCcEEEEEEcccccCCCeEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKND-PNLKIEWIF--NGKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQGIY 139 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~-p~~~v~W~k--~g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y 139 (805)
.+.+.+|++++|+|..+.... ....+.||+ .|+.. ...+|+....++..+.|.|.+++.+|+|.|
T Consensus 9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Y 88 (110)
T d1oaql_ 9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY 88 (110)
T ss_dssp EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeE
Confidence 578999999999999872111 122388997 23221 123578887788889999999999999999
Q ss_pred EEEEEeCC
Q psy2166 140 TCRAWNLA 147 (805)
Q Consensus 140 ~C~a~n~~ 147 (805)
.|.+....
T Consensus 89 yCa~~~~~ 96 (110)
T d1oaql_ 89 FCALWYSN 96 (110)
T ss_dssp EEEEEETT
T ss_pred EEEcccCC
Confidence 99987643
|
| >d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-A group [TaxId: 10090]
Probab=98.30 E-value=1.1e-06 Score=69.55 Aligned_cols=82 Identities=18% Similarity=0.295 Sum_probs=55.6
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCce---EEEeeCCEEEEEEccCCCCCCEEEE
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY---RTFHDFGIVILDILYCYEENSGVYE 570 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~---~~~~~~~~~~L~i~~v~~~d~G~Y~ 570 (805)
.+|.+.+.++.. +..|+.++|.|.+.++-++...++|++||+++..+... ....++.........+..++.+.|+
T Consensus 2 ~pP~V~v~p~~~--~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~yt 79 (100)
T d1muja1 2 EAPQATVFPKSP--VLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYD 79 (100)
T ss_dssp CCCEEEEEESSC--CCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEE
T ss_pred CCCEEEEEcCCc--cccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEE
Confidence 578887765443 56789999999999876778999999999988643211 1112223333333333456777899
Q ss_pred EEEEcCC
Q psy2166 571 CRATNKY 577 (805)
Q Consensus 571 C~a~n~~ 577 (805)
|++.+..
T Consensus 80 C~V~H~s 86 (100)
T d1muja1 80 CKVEHWG 86 (100)
T ss_dssp EEEECTT
T ss_pred EEEEECC
Confidence 9999864
|
| >d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.30 E-value=1.6e-06 Score=70.32 Aligned_cols=71 Identities=18% Similarity=0.329 Sum_probs=54.3
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEe---c---------CCCCceEEEecCcEEEEEEcccccCCCeE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKP---L---------ELGSRFKTTADFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~---i---------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 138 (805)
|..+.+.+|++|+|.|.... .....+.||+- |+. | ....++....++..+.|+|.+++.+|+|.
T Consensus 10 P~~l~~~~G~svtL~C~~s~--~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~ 87 (109)
T d1bwwa_ 10 PSSLSASVGDRVTITCQASQ--DIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIAT 87 (109)
T ss_dssp CSEEEECTTCCEEEEEEESS--CCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred CCEEEECCCCCEEEEEEecC--CCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCce
Confidence 44678999999999999873 33456899982 211 1 12347777777788899999999999999
Q ss_pred EEEEEEe
Q psy2166 139 YTCRAWN 145 (805)
Q Consensus 139 Y~C~a~n 145 (805)
|.|.+..
T Consensus 88 YyCA~~~ 94 (109)
T d1bwwa_ 88 YYCQQYQ 94 (109)
T ss_dssp EEEEECS
T ss_pred EEEeecC
Confidence 9998754
|
| >d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.30 E-value=6.2e-07 Score=72.41 Aligned_cols=71 Identities=14% Similarity=0.236 Sum_probs=53.4
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------------CCCCceEEEecCcEEEEEEcccccCCCe
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQG 137 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G 137 (805)
.|..+.+.+|++|+|+|... ......+.||+ .|+.. ....++....++..++|.|.+++.+|+|
T Consensus 7 sP~s~~~~~G~~vtl~C~~s--~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa 84 (107)
T d3cx5k1 7 TPVSLAASLGDRVTISCRAS--QDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIA 84 (107)
T ss_dssp ESTTCCBCSSSCCEEEEEES--SCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCS
T ss_pred cCCEEEECCCCCEEEEEEcC--CCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCC
Confidence 34467899999999999977 34455689997 23211 1234666666677889999999999999
Q ss_pred EEEEEEE
Q psy2166 138 IYTCRAW 144 (805)
Q Consensus 138 ~Y~C~a~ 144 (805)
.|.|.+.
T Consensus 85 ~YyCa~~ 91 (107)
T d3cx5k1 85 TYFCQHH 91 (107)
T ss_dssp EEEEEEC
T ss_pred cEEeeeC
Confidence 9999764
|
| >d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: NK cell activating receptor NKP44 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=2e-06 Score=69.87 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=55.1
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC--C-E--Ec---------cCCCCeEEE--eeCcEEEEEEcCCCCCCCEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--G-K--PI---------EASHRIRTV--HAFGMVVLEILGTKIEDTGVYT 766 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g-~--~l---------~~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~ 766 (805)
.+.+|++++|.|...........+.|+|. + . .+ ....++.+. ...+.+.|+|.+++.+|+|.|.
T Consensus 7 ~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y~ 86 (108)
T d1hkfa_ 7 QSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHYW 86 (108)
T ss_dssp EECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred EEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEEEE
Confidence 78999999999987522223346789882 1 1 01 112444443 3356789999999999999999
Q ss_pred EEEEcCCc-cEEEEEEEEEEE
Q psy2166 767 CRATNKWG-QAEISVNLECVV 786 (805)
Q Consensus 767 C~a~N~~G-~~~~~~~l~V~~ 786 (805)
|.+..... .......+.|+|
T Consensus 87 C~v~~~~~~~~~~~~~~~l~V 107 (108)
T d1hkfa_ 87 CRIYRPSDNSVSKSVRFYLVV 107 (108)
T ss_dssp EEEECTTTCCEEEEEEEEEEE
T ss_pred EEEecCCCCcEEEeeEEEEEE
Confidence 99875443 344444555543
|
| >d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=98.29 E-value=1.1e-06 Score=71.62 Aligned_cols=67 Identities=22% Similarity=0.251 Sum_probs=51.5
Q ss_pred ccCCCCeEEEEEEEeecCC--CCeEEEEEEC--C---EEc---------cCCCCeEEEeeCcEEEEEEcCCCCCCCEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGD--QTMTVEFLYN--G---KPI---------EASHRIRTVHAFGMVVLEILGTKIEDTGVYT 766 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~--p~~~v~W~~~--g---~~l---------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 766 (805)
.+.+|++|+|.|.+. +. ....+.||+- | +.| ...+++....++..+.|.|.+++.+|+|.|.
T Consensus 11 ~v~~G~svtL~C~~s--~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Yy 88 (114)
T d2rhea_ 11 SGTPGQRVTISCTGS--ATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYY 88 (114)
T ss_dssp EECTTCCEEEEEECC--TTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred EeCCCCCEEEEEEEC--CccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEE
Confidence 789999999999986 43 3467899982 1 111 1234666777778899999999999999999
Q ss_pred EEEEc
Q psy2166 767 CRATN 771 (805)
Q Consensus 767 C~a~N 771 (805)
|.+..
T Consensus 89 CA~~~ 93 (114)
T d2rhea_ 89 CAAWN 93 (114)
T ss_dssp EEEEE
T ss_pred EeecC
Confidence 98864
|
| >d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.29 E-value=4.8e-07 Score=74.39 Aligned_cols=74 Identities=15% Similarity=0.255 Sum_probs=52.4
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEEC--CE----E--------ccCCCCeEEE--eeCcEEEEEEcCCCCCC
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN--GK----P--------IEASHRIRTV--HAFGMVVLEILGTKIED 761 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g~----~--------l~~~~~~~~~--~~~~~~~L~i~~v~~~d 761 (805)
|..+ .+.+|++|+|.|... ..+...+.||+- |. . .....++... .....++|+|.+++.+|
T Consensus 7 P~~~-~~~~G~~vtL~C~~~--~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~D 83 (114)
T d2cdea1 7 PQSL-IILEGKNCTLQCNYT--VSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSD 83 (114)
T ss_dssp CSEE-EEETTCCCEEEEEEC--CSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGG
T ss_pred CCEE-EEeCCCCEEEEEEEc--CCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhh
Confidence 3444 789999999999987 666778999971 11 0 0111333332 22356789999999999
Q ss_pred CEEEEEEEEcCCc
Q psy2166 762 TGVYTCRATNKWG 774 (805)
Q Consensus 762 ~G~Y~C~a~N~~G 774 (805)
+|.|.|.+.+..+
T Consensus 84 sg~Y~Ca~~~~~~ 96 (114)
T d2cdea1 84 SASYICVVSDRGS 96 (114)
T ss_dssp CSEEEEEEECSCT
T ss_pred CcccceeeecCCC
Confidence 9999999987533
|
| >d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.29 E-value=1.5e-06 Score=70.24 Aligned_cols=72 Identities=15% Similarity=0.184 Sum_probs=54.7
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEEC--CE------------EccCCCCeEEEeeCcEEEEEEcCCCCCCCE
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN--GK------------PIEASHRIRTVHAFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g~------------~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G 763 (805)
|..+ .+.+|++++|.|... ..-...+.|||- |+ .-.-..++....++....|+|.+++.+|+|
T Consensus 8 p~~l-~v~~G~~vtL~C~~~--~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa 84 (107)
T d1j1pl_ 8 PATL-SVTPGNSVSLSCRAS--QSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFG 84 (107)
T ss_dssp CSEE-EECTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred CCeE-EECCCCCEEEEEEec--CCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCE
Confidence 3344 899999999999986 445567999982 11 111235777777788899999999999999
Q ss_pred EEEEEEEcC
Q psy2166 764 VYTCRATNK 772 (805)
Q Consensus 764 ~Y~C~a~N~ 772 (805)
.|-|.+.+.
T Consensus 85 ~YyCa~~~~ 93 (107)
T d1j1pl_ 85 MYFCQQANS 93 (107)
T ss_dssp EEEEEECSS
T ss_pred EEEEEcCCC
Confidence 999987654
|
| >d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.29 E-value=1.6e-06 Score=70.02 Aligned_cols=71 Identities=17% Similarity=0.327 Sum_probs=54.0
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEe---c---------CCCCceEEEecCcEEEEEEcccccCCCeE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKP---L---------ELGSRFKTTADFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~---i---------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 138 (805)
|..+.+.+|++|+|.|... ......+.||+- |+. | ....++....++..+.|.|.+++.+|+|.
T Consensus 8 P~~l~~~~G~svtL~C~~s--~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~ 85 (109)
T d1mqkl_ 8 PVSLSASVGETVTITCRAS--ENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGS 85 (109)
T ss_dssp CSEEEECTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred CCEEEECCCCCEEEEEEeC--CCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCee
Confidence 4467889999999999987 334456999982 221 1 12247777777788899999999999999
Q ss_pred EEEEEEe
Q psy2166 139 YTCRAWN 145 (805)
Q Consensus 139 Y~C~a~n 145 (805)
|.|.+..
T Consensus 86 YyCA~~~ 92 (109)
T d1mqkl_ 86 YYCQHHY 92 (109)
T ss_dssp EEEEECS
T ss_pred EEEeeeC
Confidence 9998753
|
| >d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.29 E-value=7.4e-07 Score=73.25 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=52.9
Q ss_pred cCCCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec------------CCCCceEEEe--cCcEEEEEEcccccC
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL------------ELGSRFKTTA--DFGFVTLDLTEVYDR 134 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i------------~~~~~~~~~~--~~~~~~L~I~~~~~~ 134 (805)
..+..+.+.+|++|+|.|.... .....+.|||. |+.+ ....++.... .+..+.|.|.+++.+
T Consensus 6 Q~~~~v~v~~G~~vtL~C~~~~--~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 83 (115)
T d1lp9e1 6 QTEGLVTLTEGLPVMLNCTYQS--TYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLS 83 (115)
T ss_dssp ECCSEEEEETTSCEEECEEEEC--SSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGG
T ss_pred cCCCeEEECCCCCEEEEEEEeC--CCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccc
Confidence 4455678999999999999883 44567999983 2211 1123455443 234567999999999
Q ss_pred CCeEEEEEEEeC
Q psy2166 135 DQGIYTCRAWNL 146 (805)
Q Consensus 135 D~G~Y~C~a~n~ 146 (805)
|+|.|.|.+...
T Consensus 84 Dsg~YyCa~~~~ 95 (115)
T d1lp9e1 84 DSALYYCALFLA 95 (115)
T ss_dssp GCEEEEEEEEEC
T ss_pred cCccceEEEEcC
Confidence 999999988654
|
| >d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=2e-06 Score=68.06 Aligned_cols=84 Identities=15% Similarity=0.277 Sum_probs=57.2
Q ss_pred CCCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc--eEEEeeCCEEEEEEccCCCCCCEEE
Q psy2166 492 VAEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR--YRTFHDFGIVILDILYCYEENSGVY 569 (805)
Q Consensus 492 ~~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y 569 (805)
+..+|.+.+..... +..|+.++|.|.+.++-++...++|.+||+++..... .....++.........+..+|.+.|
T Consensus 2 v~~~P~V~v~~~~~--~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~y 79 (100)
T d1k5nb_ 2 IQRTPKIQVYSRHP--AENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEY 79 (100)
T ss_dssp CCBCCEEEEEESSC--CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCE
T ss_pred ccCCCeeEEEcCCc--ccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEE
Confidence 35678877753332 5679999999999987677889999999999864321 1222233333333344456677899
Q ss_pred EEEEEcCC
Q psy2166 570 ECRATNKY 577 (805)
Q Consensus 570 ~C~a~n~~ 577 (805)
+|.+.+..
T Consensus 80 tC~V~H~s 87 (100)
T d1k5nb_ 80 ACRVNHVT 87 (100)
T ss_dssp EEEEECTT
T ss_pred EEEEEeCC
Confidence 99998864
|
| >d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.27 E-value=8.5e-07 Score=72.83 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=53.5
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEe---c---------CCCCceEEEecCcEEEEEEcccccCCCeE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKP---L---------ELGSRFKTTADFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~---i---------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 138 (805)
|..+.+.+|++++|.|... ......+.||+- ++. | ....++....++..+.|.|.+++.+|+|.
T Consensus 8 P~sv~~~~G~svtl~C~~s--~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsav 85 (119)
T d1f3rb2 8 PSLLSASVGDRVTLSCKGS--QNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVAT 85 (119)
T ss_dssp TSEECCCTTCCEEEEEECS--SCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSE
T ss_pred CCEEEECCCCCEEEEEEeC--CCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeE
Confidence 4467789999999999977 333456899982 211 1 12346766666777899999999999999
Q ss_pred EEEEEEeC
Q psy2166 139 YTCRAWNL 146 (805)
Q Consensus 139 Y~C~a~n~ 146 (805)
|.|.+...
T Consensus 86 YyCa~~~~ 93 (119)
T d1f3rb2 86 YFCYQYNN 93 (119)
T ss_dssp EEEEEESS
T ss_pred EEeeccCC
Confidence 99987653
|
| >d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.27 E-value=1.2e-06 Score=72.69 Aligned_cols=77 Identities=18% Similarity=0.300 Sum_probs=54.4
Q ss_pred CeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEE--CCEecC----------------------CCCceEEE-ec
Q psy2166 66 PVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPLE----------------------LGSRFKTT-AD 120 (805)
Q Consensus 66 p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i~----------------------~~~~~~~~-~~ 120 (805)
|.+...+. .+.+.+|++++|.|.+. +.....+.|+| .|..+. ...++... .+
T Consensus 2 ~~~~~~P~-~~~~~~G~~vtL~C~~~--~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 78 (122)
T d1nezg_ 2 PELRIFPK-KMDAELGQKVDLVCEVL--GSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDT 78 (122)
T ss_dssp CEEEEESS-CEEECTTCCEEEEEEEE--SCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEET
T ss_pred CceEEcCC-EEEECCCCCEEEEEEEc--CccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCC
Confidence 55555544 67899999999999987 45566899998 222210 01134333 33
Q ss_pred CcEEEEEEcccccCCCeEEEEEEEe
Q psy2166 121 FGFVTLDLTEVYDRDQGIYTCRAWN 145 (805)
Q Consensus 121 ~~~~~L~I~~~~~~D~G~Y~C~a~n 145 (805)
+..++|+|.+++.+|+|.|.|.+..
T Consensus 79 ~~~~~L~I~~~~~~Dsg~YyCa~~~ 103 (122)
T d1nezg_ 79 NNKYVLTLNKFSKENEGYYFCSVIS 103 (122)
T ss_dssp TTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCEeEEEEcccccCCCEEEEeeEeC
Confidence 4667999999999999999998864
|
| >d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.27 E-value=8.1e-07 Score=72.97 Aligned_cols=72 Identities=18% Similarity=0.271 Sum_probs=52.6
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec------------CCCCceEEEe--cCcEEEEEEcccccCCC
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL------------ELGSRFKTTA--DFGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i------------~~~~~~~~~~--~~~~~~L~I~~~~~~D~ 136 (805)
|..+.+.+|++|+|.|... ......+.||+- +... ....++.... ....++|+|.+++.+|+
T Consensus 7 P~~~~~~~G~~vtL~C~~~--~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Ds 84 (114)
T d2cdea1 7 PQSLIILEGKNCTLQCNYT--VSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDS 84 (114)
T ss_dssp CSEEEEETTCCCEEEEEEC--CSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGC
T ss_pred CCEEEEeCCCCEEEEEEEc--CCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhC
Confidence 4467899999999999987 344567999972 2111 1123555433 34678999999999999
Q ss_pred eEEEEEEEeC
Q psy2166 137 GIYTCRAWNL 146 (805)
Q Consensus 137 G~Y~C~a~n~ 146 (805)
|.|.|.+...
T Consensus 85 g~Y~Ca~~~~ 94 (114)
T d2cdea1 85 ASYICVVSDR 94 (114)
T ss_dssp SEEEEEEECS
T ss_pred cccceeeecC
Confidence 9999999764
|
| >d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.26 E-value=2.1e-06 Score=69.66 Aligned_cols=74 Identities=18% Similarity=0.310 Sum_probs=53.9
Q ss_pred CCCceecCCCcEEEEEEEecC--CCCCceEEEEEC--CEec------------CCCCceEEEecCcEEEEEEcccccCCC
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPK--NDPNLKIEWIFN--GKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~--~~p~~~v~W~k~--g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~ 136 (805)
|..+.+.+|++|+|+|..+.. ......+.||+. |+.. ....|+.....+..+.|+|.+++.+|+
T Consensus 8 P~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~Ds 87 (111)
T d2gsia1 8 PASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDA 87 (111)
T ss_dssp CSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCC
Confidence 446789999999999987621 112224899982 3211 123478877777888999999999999
Q ss_pred eEEEEEEEeC
Q psy2166 137 GIYTCRAWNL 146 (805)
Q Consensus 137 G~Y~C~a~n~ 146 (805)
|.|.|.+...
T Consensus 88 A~YyCa~~~~ 97 (111)
T d2gsia1 88 ATYYCSHIRE 97 (111)
T ss_dssp EEEEEEECSS
T ss_pred ceEEEEECCC
Confidence 9999987644
|
| >d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.26 E-value=3e-06 Score=67.11 Aligned_cols=83 Identities=18% Similarity=0.317 Sum_probs=56.3
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEE-e-eCCEEEEEEccCCCCCCEEEE
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTF-H-DFGIVILDILYCYEENSGVYE 570 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~-~-~~~~~~L~i~~v~~~d~G~Y~ 570 (805)
+.+|.+.+.+... ...|+.++|.|.+.++-++...++|++||..+......... . ++.........+..++.+.|+
T Consensus 2 ~~~P~V~v~~~~~--~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~yt 79 (99)
T d1lk2b_ 2 QKTPQIQVYSRHP--PENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYA 79 (99)
T ss_dssp CBCCEEEEEESSC--CCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEE
T ss_pred CCCCEEEEEcCCC--ccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEE
Confidence 4578777654332 45788999999999876677899999999998754332222 2 233333333334456777999
Q ss_pred EEEEcCC
Q psy2166 571 CRATNKY 577 (805)
Q Consensus 571 C~a~n~~ 577 (805)
|.+.+..
T Consensus 80 C~V~H~s 86 (99)
T d1lk2b_ 80 CRVKHDS 86 (99)
T ss_dssp EEEECTT
T ss_pred EEEEeCC
Confidence 9998754
|
| >d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.25 E-value=9.9e-07 Score=71.17 Aligned_cols=71 Identities=15% Similarity=0.086 Sum_probs=53.4
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEE--CCE------------EccCCCCeEEEeeCcEEEEEEcCCCCCCCE
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY--NGK------------PIEASHRIRTVHAFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g~------------~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G 763 (805)
|.++ .+.+|++|+|.|... ......+.||+ .|+ ......++....++..+.|+|.+++.+|+|
T Consensus 8 P~s~-~~~~G~~vtl~C~~s--~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa 84 (107)
T d3cx5k1 8 PVSL-AASLGDRVTISCRAS--QDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIA 84 (107)
T ss_dssp STTC-CBCSSSCCEEEEEES--SCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCS
T ss_pred CCEE-EECCCCCEEEEEEcC--CCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCC
Confidence 4455 899999999999987 66666799997 121 111234555566677889999999999999
Q ss_pred EEEEEEEc
Q psy2166 764 VYTCRATN 771 (805)
Q Consensus 764 ~Y~C~a~N 771 (805)
.|.|.+.+
T Consensus 85 ~YyCa~~~ 92 (107)
T d3cx5k1 85 TYFCQHHI 92 (107)
T ss_dssp EEEEEECS
T ss_pred cEEeeeCC
Confidence 99997654
|
| >d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.25 E-value=1.2e-06 Score=71.36 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=48.6
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEE--CCE---Ec---------cCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLY--NGK---PI---------EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g~---~l---------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
.+.+|++++|.|... .......+.||| .|+ .| ....++....+.....|.|.+++.+|+|.|.|.
T Consensus 9 sv~~G~~vtl~C~~s-~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa 87 (110)
T d2esvd1 9 DCAEGRAANLPCNHS-TISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYYCI 87 (110)
T ss_dssp EEETTSCEEEEEECT-TCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEEEE
T ss_pred EECCCCCEEEEEEEc-CCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEEEE
Confidence 789999999999975 123456789998 221 11 111233334445678899999999999999999
Q ss_pred EEcC
Q psy2166 769 ATNK 772 (805)
Q Consensus 769 a~N~ 772 (805)
+...
T Consensus 88 ~~~~ 91 (110)
T d2esvd1 88 VVRS 91 (110)
T ss_dssp EEES
T ss_pred EeCC
Confidence 8643
|
| >d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.25 E-value=1.9e-06 Score=69.36 Aligned_cols=72 Identities=19% Similarity=0.199 Sum_probs=53.0
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEEC--CE---E---------ccCCCCeEEEeeCcEEEEEEcCCCCCCCE
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN--GK---P---------IEASHRIRTVHAFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g~---~---------l~~~~~~~~~~~~~~~~L~i~~v~~~d~G 763 (805)
|..+ .+.+|++++|.|... +.....+.||+- |+ . .....++....++..+.|+|.++..+|+|
T Consensus 8 P~~l-~~~~G~svtL~C~~s--~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa 84 (108)
T d1jhll_ 8 PSYL-VASPGETITINCRAS--KSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFA 84 (108)
T ss_dssp CSEE-EECTTSCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCS
T ss_pred CCeE-EecCCCCEEEEEEcc--CCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccce
Confidence 3444 889999999999987 555667999981 11 1 11123455566667789999999999999
Q ss_pred EEEEEEEcC
Q psy2166 764 VYTCRATNK 772 (805)
Q Consensus 764 ~Y~C~a~N~ 772 (805)
.|.|.+.+.
T Consensus 85 ~YyCA~~~~ 93 (108)
T d1jhll_ 85 MYICQQHNE 93 (108)
T ss_dssp EEEEEECSS
T ss_pred EEEEeeCCC
Confidence 999987664
|
| >d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.25 E-value=9.9e-07 Score=71.11 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=52.9
Q ss_pred CcccccCCCCeEEEEEEEeecCCCCeEEEEEE--CCE------------EccCCCCeEEEeeCcEEEEEEcCCCCCCCEE
Q psy2166 699 QHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY--NGK------------PIEASHRIRTVHAFGMVVLEILGTKIEDTGV 764 (805)
Q Consensus 699 ~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g~------------~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 764 (805)
..+ .+.+|++|+|.|... +.-...+.||| .|+ .-....++.....+..+.|+|.++..+|+|.
T Consensus 9 ~~l-tv~~G~svtl~C~~s--~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~ 85 (107)
T d1ospl1 9 SSF-SVSLGDRVTITCKAS--EDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVAT 85 (107)
T ss_dssp SEE-EECTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSE
T ss_pred CEE-EECCCCCEEEEEecC--CCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCc
Confidence 344 899999999999987 55555799998 111 1112356666656667899999999999999
Q ss_pred EEEEEEcC
Q psy2166 765 YTCRATNK 772 (805)
Q Consensus 765 Y~C~a~N~ 772 (805)
|.|.+.+.
T Consensus 86 YyCa~~~~ 93 (107)
T d1ospl1 86 YFCQQYWS 93 (107)
T ss_dssp EEEEECSS
T ss_pred EEEeeccC
Confidence 99987654
|
| >d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.24 E-value=1.3e-06 Score=70.54 Aligned_cols=72 Identities=14% Similarity=0.206 Sum_probs=54.3
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------------CCCCceEEEecCcEEEEEEcccccCCCeE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 138 (805)
|+.+.+.+|++|+|.|.... .....+.||+ .|+.+ ...+|+....++..+.|.|.+++.+|+|.
T Consensus 6 P~s~~~~~G~svtl~C~~~~--~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~ 83 (108)
T d1nfde1 6 PSSASVTVGETVKITCSGDQ--LPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAA 83 (108)
T ss_dssp CSEEEEETTSCCCEEEEETT--GGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSE
T ss_pred CCeeEECCCCCEEEEEECCC--CCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCce
Confidence 34678899999999998762 3334689998 23211 11247888888888899999999999999
Q ss_pred EEEEEEeC
Q psy2166 139 YTCRAWNL 146 (805)
Q Consensus 139 Y~C~a~n~ 146 (805)
|.|.+...
T Consensus 84 YyCA~~~~ 91 (108)
T d1nfde1 84 YYCLSSYG 91 (108)
T ss_dssp EEEEEEET
T ss_pred EEEEeecC
Confidence 99988654
|
| >d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.24 E-value=1.8e-06 Score=69.52 Aligned_cols=72 Identities=17% Similarity=0.157 Sum_probs=53.9
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEEC--C---E---------EccCCCCeEEEeeCcEEEEEEcCCCCCCCE
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN--G---K---------PIEASHRIRTVHAFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g---~---------~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G 763 (805)
|.++ .+.+|++|+|.|... ..-...+.|||- | + ......++....++..+.|+|.+++.+|+|
T Consensus 8 P~sl-~~~~G~svtL~C~~s--~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA 84 (107)
T d1tjgl1 8 PSSL-SASVGDRITITCRAS--QGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFA 84 (107)
T ss_dssp CSEE-EECTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred CCEE-EECCCCCEEEEEEEC--CCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCc
Confidence 4455 899999999999987 444568899981 1 1 111234666666777889999999999999
Q ss_pred EEEEEEEcC
Q psy2166 764 VYTCRATNK 772 (805)
Q Consensus 764 ~Y~C~a~N~ 772 (805)
.|-|.+.+.
T Consensus 85 ~YyCa~~~~ 93 (107)
T d1tjgl1 85 TYYCQQLHF 93 (107)
T ss_dssp EEEEEECSB
T ss_pred eEEEEECcC
Confidence 999976543
|
| >d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.23 E-value=2.3e-06 Score=68.91 Aligned_cols=67 Identities=19% Similarity=0.244 Sum_probs=52.0
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC--C---EEc---------cCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--G---KPI---------EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g---~~l---------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
.+.+|++++|.|... +.-...+.|||- | +.+ ....++....++..+.|.|.+++.+|+|.|.|.
T Consensus 11 ~~~~G~svtL~C~~s--~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa 88 (106)
T d1lk3l1 11 TVSPGEKLTISCKAS--ESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQ 88 (106)
T ss_dssp EECTTSCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred EECCCCCEEEEEEeC--CCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcccc
Confidence 789999999999997 555667999971 1 111 123567777777888999999999999999997
Q ss_pred EEc
Q psy2166 769 ATN 771 (805)
Q Consensus 769 a~N 771 (805)
+..
T Consensus 89 ~~~ 91 (106)
T d1lk3l1 89 QSW 91 (106)
T ss_dssp ECS
T ss_pred ccc
Confidence 643
|
| >d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.23 E-value=7.2e-07 Score=73.32 Aligned_cols=70 Identities=11% Similarity=0.162 Sum_probs=49.6
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC--C---EEc---------cCCCCeEEE--eeCcEEEEEEcCCCCCCCEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--G---KPI---------EASHRIRTV--HAFGMVVLEILGTKIEDTGVYT 766 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g---~~l---------~~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~ 766 (805)
.+.+|++++|.|... ......+.|||. | +.+ ....++.+. .....+.|+|.+++.+|+|.|.
T Consensus 12 ~v~~G~~vtL~C~~~--~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~Yy 89 (115)
T d1lp9e1 12 TLTEGLPVMLNCTYQ--STYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYY 89 (115)
T ss_dssp EEETTSCEEECEEEE--CSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEEE
T ss_pred EECCCCCEEEEEEEe--CCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCccce
Confidence 789999999999998 566678999982 2 111 012233332 2233567999999999999999
Q ss_pred EEEEcCCc
Q psy2166 767 CRATNKWG 774 (805)
Q Consensus 767 C~a~N~~G 774 (805)
|.+....+
T Consensus 90 Ca~~~~~~ 97 (115)
T d1lp9e1 90 CALFLASS 97 (115)
T ss_dssp EEEEECSS
T ss_pred EEEEcCCC
Confidence 98866533
|
| >d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=1.3e-06 Score=72.96 Aligned_cols=79 Identities=16% Similarity=0.213 Sum_probs=54.6
Q ss_pred EecCCCCceecCCCcEEEEEEEecCC-----CCCceEEEEECCEecC-----------------CCCceEEEec--CcEE
Q psy2166 69 IVPLKPEFKLGEAQPLHLEAQVEPKN-----DPNLKIEWIFNGKPLE-----------------LGSRFKTTAD--FGFV 124 (805)
Q Consensus 69 ~~~~~~~~~v~~G~~v~L~C~~~~~~-----~p~~~v~W~k~g~~i~-----------------~~~~~~~~~~--~~~~ 124 (805)
.+..+..+.|.+|+.|+|+|..+... .....+.|++....-. ..+|+.+..+ .+.+
T Consensus 4 ~~~~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 83 (121)
T d2g5ra1 4 SLTMQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNC 83 (121)
T ss_dssp EEECCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBC
T ss_pred EEEeCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEE
Confidence 44556678999999999999986221 1234678998531110 1235665543 3567
Q ss_pred EEEEcccccCCCeEEEEEEEeCC
Q psy2166 125 TLDLTEVYDRDQGIYTCRAWNLA 147 (805)
Q Consensus 125 ~L~I~~~~~~D~G~Y~C~a~n~~ 147 (805)
+|.|.+++.+|+|.|.|.+....
T Consensus 84 sL~I~~v~~~DsG~Y~C~v~~~~ 106 (121)
T d2g5ra1 84 TLSIRDARMSDAGRYFFRMEKGN 106 (121)
T ss_dssp CEEECSCCGGGCEEEEEEEEETT
T ss_pred EEEECCCChHHCEEEEEEEEeCC
Confidence 89999999999999999997653
|
| >d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.21 E-value=3e-06 Score=69.07 Aligned_cols=72 Identities=15% Similarity=0.202 Sum_probs=51.5
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEE--CCEecC------------CCCceEEE--ecCcEEEEEEcccccCC
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPLE------------LGSRFKTT--ADFGFVTLDLTEVYDRD 135 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i~------------~~~~~~~~--~~~~~~~L~I~~~~~~D 135 (805)
.++.+.+.+|+.|+|.|.... .....+.||+ .|+... ...++... ..+..++|.|.+++.+|
T Consensus 6 ~p~s~~~~~G~svtl~C~~s~--~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D 83 (111)
T d1bd2d1 6 NSPSLSVQEGRISILNCDYTN--SMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGD 83 (111)
T ss_dssp CCSEEEEETTSCEEEEEEECC--TTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred cCCEEEEcCCCCEEEEEEeCC--CCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccc
Confidence 344678899999999999773 3445688998 232111 12344443 33568899999999999
Q ss_pred CeEEEEEEEe
Q psy2166 136 QGIYTCRAWN 145 (805)
Q Consensus 136 ~G~Y~C~a~n 145 (805)
+|.|.|.+..
T Consensus 84 sa~YyCa~~~ 93 (111)
T d1bd2d1 84 SAVYFCAAME 93 (111)
T ss_dssp CEEEEEEEES
T ss_pred cEEEEeeccC
Confidence 9999998864
|
| >d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.21 E-value=1.7e-06 Score=70.67 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=50.6
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEecC------------CCCceEE--EecCcEEEEEEcccccCCC
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPLE------------LGSRFKT--TADFGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i~------------~~~~~~~--~~~~~~~~L~I~~~~~~D~ 136 (805)
|..+.+.+|+.++|+|.... .....+.||+- |.... ...++.. ...+..++|.|.+++.+|+
T Consensus 6 P~~~~~~~G~~vtl~C~~~~--~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds 83 (110)
T d1u3ha1 6 PQSLTVWEGETAILNCSYEN--SAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDS 83 (110)
T ss_dssp CSSEEEETTSCEEEEEEECC--TTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSC
T ss_pred CCEEEEcCCCCEEEEEEecC--CCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCc
Confidence 44678899999999999873 33446899982 22111 1123332 3345678999999999999
Q ss_pred eEEEEEEEeC
Q psy2166 137 GIYTCRAWNL 146 (805)
Q Consensus 137 G~Y~C~a~n~ 146 (805)
|.|.|.+...
T Consensus 84 a~YyCa~~~~ 93 (110)
T d1u3ha1 84 ATYFCAASAN 93 (110)
T ss_dssp SEEEECCEES
T ss_pred eeEeeeecCC
Confidence 9999998643
|
| >d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Engineered (including hybrid species)
Probab=98.20 E-value=2.7e-06 Score=68.35 Aligned_cols=71 Identities=17% Similarity=0.214 Sum_probs=53.8
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEEC--C---EEc---------cCCCCeEEEeeCcEEEEEEcCCCCCCCE
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN--G---KPI---------EASHRIRTVHAFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g---~~l---------~~~~~~~~~~~~~~~~L~i~~v~~~d~G 763 (805)
|.++ .+.+|++++|.|... +.-...+.||+- | +.+ ....++....++....|.|.+++.+|+|
T Consensus 7 P~sl-~~~~G~svtL~C~~~--~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa 83 (106)
T d1op3k1 7 PSTL-SASVGDTITITCRAS--QSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFA 83 (106)
T ss_dssp CSEE-EECTTCEEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCS
T ss_pred CCeE-EECCCCCEEEEEEeC--CCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCC
Confidence 4455 899999999999987 444556899982 1 111 1224666666778889999999999999
Q ss_pred EEEEEEEc
Q psy2166 764 VYTCRATN 771 (805)
Q Consensus 764 ~Y~C~a~N 771 (805)
.|.|.+..
T Consensus 84 ~YyCa~~~ 91 (106)
T d1op3k1 84 TYHCQHYA 91 (106)
T ss_dssp EEEEEEEC
T ss_pred cEeeeeCC
Confidence 99998765
|
| >d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor (against lysozyme) species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]
Probab=98.20 E-value=4.5e-06 Score=67.63 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=53.9
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEE------CCEEccCCCCeEEEee--CcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY------NGKPIEASHRIRTVHA--FGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~------~g~~l~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
|..+ .+.+|++++|.|.+.........+.||+ ....+....++....+ ...+.|+|.+++.+|+|.|.|.+
T Consensus 6 P~s~-t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~ 84 (112)
T d1sq2n_ 6 PRSV-TKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGL 84 (112)
T ss_dssp CSEE-EECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred CCEE-EEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEE
Confidence 3344 7899999999999862123457899998 2244545566655433 34679999999999999999987
Q ss_pred EcC
Q psy2166 770 TNK 772 (805)
Q Consensus 770 ~N~ 772 (805)
.-.
T Consensus 85 ~~~ 87 (112)
T d1sq2n_ 85 GVA 87 (112)
T ss_dssp CBT
T ss_pred ecC
Confidence 644
|
| >d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.20 E-value=3.2e-06 Score=68.23 Aligned_cols=71 Identities=18% Similarity=0.166 Sum_probs=53.4
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEE--CC---EEc---------cCCCCeEEEeeCcEEEEEEcCCCCCCCE
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY--NG---KPI---------EASHRIRTVHAFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g---~~l---------~~~~~~~~~~~~~~~~L~i~~v~~~d~G 763 (805)
|... .+.+|++++|.|... ......+.||+ .| +.| ....++....++....|.|.+++.+|+|
T Consensus 8 P~~l-~~~~G~svtL~C~~s--~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa 84 (109)
T d1mqkl_ 8 PVSL-SASVGETVTITCRAS--ENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFG 84 (109)
T ss_dssp CSEE-EECTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred CCEE-EECCCCCEEEEEEeC--CCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCe
Confidence 4444 789999999999986 55556799998 11 111 1125666666777889999999999999
Q ss_pred EEEEEEEc
Q psy2166 764 VYTCRATN 771 (805)
Q Consensus 764 ~Y~C~a~N 771 (805)
.|.|.+..
T Consensus 85 ~YyCA~~~ 92 (109)
T d1mqkl_ 85 SYYCQHHY 92 (109)
T ss_dssp EEEEEECS
T ss_pred eEEEeeeC
Confidence 99998763
|
| >d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.20 E-value=2.1e-06 Score=69.99 Aligned_cols=75 Identities=12% Similarity=0.266 Sum_probs=53.2
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec------------CCCCceEEEe--cCcEEEEEEcccccCCC
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL------------ELGSRFKTTA--DFGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i------------~~~~~~~~~~--~~~~~~L~I~~~~~~D~ 136 (805)
|+.+.+.+|++|+|.|...+......-+.|+|- ++.+ ...+++.... .+..+.|.|.+++.+|+
T Consensus 7 P~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds 86 (111)
T d1cd0a_ 7 PHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDE 86 (111)
T ss_dssp CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred CCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccC
Confidence 446889999999999998732122335899982 2221 1224565544 35688999999999999
Q ss_pred eEEEEEEEeCC
Q psy2166 137 GIYTCRAWNLA 147 (805)
Q Consensus 137 G~Y~C~a~n~~ 147 (805)
|.|.|.+....
T Consensus 87 a~YyCA~~~~~ 97 (111)
T d1cd0a_ 87 ADYYCQSYDAR 97 (111)
T ss_dssp EEEEEEEEETT
T ss_pred cEEEEeeccCC
Confidence 99999886643
|
| >d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.20 E-value=3.8e-06 Score=68.32 Aligned_cols=76 Identities=20% Similarity=0.303 Sum_probs=54.7
Q ss_pred cCCCCceecCCCcEEEEEEEecC---CCCCceEEEEEC--CEec------------CCCCceEEEecCcEEEEEEccccc
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPK---NDPNLKIEWIFN--GKPL------------ELGSRFKTTADFGFVTLDLTEVYD 133 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~---~~p~~~v~W~k~--g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~ 133 (805)
..|..+.+.+|++|+|.|..+.. ......+.||+- |+.. ....++....++..++|+|.+++.
T Consensus 7 Q~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~ 86 (113)
T d1n4xl_ 7 QTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEA 86 (113)
T ss_dssp EECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCG
T ss_pred CcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCc
Confidence 33446789999999999998631 122246899972 2111 123477777777888999999999
Q ss_pred CCCeEEEEEEEeC
Q psy2166 134 RDQGIYTCRAWNL 146 (805)
Q Consensus 134 ~D~G~Y~C~a~n~ 146 (805)
+|+|.|.|...+.
T Consensus 87 ~DsavYyCa~~~~ 99 (113)
T d1n4xl_ 87 EDLGIYYCFQGSH 99 (113)
T ss_dssp GGCEEEEEEECSS
T ss_pred ccCEEEEEEECCC
Confidence 9999999976543
|
| >d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Novel antigen receptor 12Y-2 species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]
Probab=98.19 E-value=6.7e-06 Score=66.98 Aligned_cols=74 Identities=19% Similarity=0.219 Sum_probs=54.2
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEE--CC----EEccCCCCeEEEee--CcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY--NG----KPIEASHRIRTVHA--FGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g----~~l~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
|.++ .+.+|++++|.|.+.........+.||+ .| ..+....++....+ ...+.|+|.+++.+|+|.|.|.+
T Consensus 7 P~s~-~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~ 85 (113)
T d1vesa_ 7 PRTA-TKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQA 85 (113)
T ss_dssp CSEE-EECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred CCEE-EEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeee
Confidence 4455 8899999999999972223556799997 22 23444566655443 34678999999999999999998
Q ss_pred EcC
Q psy2166 770 TNK 772 (805)
Q Consensus 770 ~N~ 772 (805)
...
T Consensus 86 ~~~ 88 (113)
T d1vesa_ 86 FYS 88 (113)
T ss_dssp EEE
T ss_pred ecc
Confidence 643
|
| >d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.19 E-value=6.3e-06 Score=66.92 Aligned_cols=71 Identities=13% Similarity=0.178 Sum_probs=50.4
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec---------------CCCCce-EEEecCcEEEEEEcccccC
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL---------------ELGSRF-KTTADFGFVTLDLTEVYDR 134 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i---------------~~~~~~-~~~~~~~~~~L~I~~~~~~ 134 (805)
|..+.+.+|++++|+|.... ....+.||| .|+.. ....++ ........+.|+|.+++.+
T Consensus 8 P~~~~~~~G~~vtl~C~~s~---~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 84 (110)
T d2aq2a1 8 PRNKVAVTGEKVTLSCQQTN---NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPS 84 (110)
T ss_dssp CSEEEECTTCCEEEEEEESS---CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGG
T ss_pred CCeEEEcCCCCEEEEEEECC---CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHh
Confidence 44678899999999999762 345799998 22111 011233 3334456789999999999
Q ss_pred CCeEEEEEEEeC
Q psy2166 135 DQGIYTCRAWNL 146 (805)
Q Consensus 135 D~G~Y~C~a~n~ 146 (805)
|+|.|.|.+...
T Consensus 85 Dsa~YyCa~~~~ 96 (110)
T d2aq2a1 85 QTSVYFCASGGG 96 (110)
T ss_dssp GCEEEEEEEEET
T ss_pred hCEEEEEeeCCC
Confidence 999999988754
|
| >d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.19 E-value=1.1e-06 Score=72.25 Aligned_cols=81 Identities=11% Similarity=0.085 Sum_probs=52.1
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEE--CC---EEcc------------CCCCeEEEeeCcEEEEEEcCCCCCCCEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLY--NG---KPIE------------ASHRIRTVHAFGMVVLEILGTKIEDTGVY 765 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g---~~l~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 765 (805)
.+.+|++++|.|... ......+.||| .| +.+. ...+.....+...+.|+|.+++.+|+|.|
T Consensus 11 ~v~~G~svtl~C~~~--~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~Y 88 (115)
T d1i9ea_ 11 TVSEGASLQLRCKYS--YSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVY 88 (115)
T ss_dssp EEETTSCEEECCEEE--CSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEEE
T ss_pred EECCCCCEEEEEEEc--CCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccccccccee
Confidence 899999999999987 55566789997 22 1111 01111112223446799999999999999
Q ss_pred EEEEEcCCccEE--EEEEEEEE
Q psy2166 766 TCRATNKWGQAE--ISVNLECV 785 (805)
Q Consensus 766 ~C~a~N~~G~~~--~~~~l~V~ 785 (805)
.|.+........ .-++|+|+
T Consensus 89 yCa~~~~~~~~~FG~GT~L~V~ 110 (115)
T d1i9ea_ 89 FCAVSGFASALTFGSGTKVIVL 110 (115)
T ss_dssp EEEEEETTEEEEECCCEEEEEE
T ss_pred cccccCCCCCCEECCCEEEEEe
Confidence 998764322111 12467765
|
| >d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.18 E-value=4.4e-06 Score=67.88 Aligned_cols=73 Identities=18% Similarity=0.384 Sum_probs=53.4
Q ss_pred cCCCCceecCCCcEEEEEEEecC---CCCCceEEEEEC--CEec------------CCCCceEEEecCcEEEEEEccccc
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPK---NDPNLKIEWIFN--GKPL------------ELGSRFKTTADFGFVTLDLTEVYD 133 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~---~~p~~~v~W~k~--g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~ 133 (805)
..++.+.+.+|++|+|+|..++. ......+.||+. |+.. ....|+....++..+.|.|.+++.
T Consensus 6 Q~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~ 85 (112)
T d1mjul1 6 QAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEA 85 (112)
T ss_dssp CCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCG
T ss_pred ecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccc
Confidence 34556789999999999997631 122456899972 2211 123467777777888999999999
Q ss_pred CCCeEEEEEE
Q psy2166 134 RDQGIYTCRA 143 (805)
Q Consensus 134 ~D~G~Y~C~a 143 (805)
+|++.|.|..
T Consensus 86 ~DsAvYyCa~ 95 (112)
T d1mjul1 86 EDVGVYYCLQ 95 (112)
T ss_dssp GGCEEEEEEE
T ss_pred cCCceEEEEe
Confidence 9999999954
|
| >d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-A group [TaxId: 10090]
Probab=98.18 E-value=2.3e-06 Score=67.49 Aligned_cols=79 Identities=15% Similarity=0.132 Sum_probs=52.6
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCe--EEEeeCc-E---EEEEEcCCCCCCCE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI--RTVHAFG-M---VVLEILGTKIEDTG 763 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~--~~~~~~~-~---~~L~i~~v~~~d~G 763 (805)
.||.+...+.+ .+..|+.++|.|.+.++-.+...|+|++||+.+..+... .....++ . +.|.+. .++.+
T Consensus 2 ~pP~V~v~p~~--~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~---~~~~~ 76 (100)
T d1muja1 2 EAPQATVFPKS--PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFI---PSDDD 76 (100)
T ss_dssp CCCEEEEEESS--CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEEC---CCTTC
T ss_pred CCCEEEEEcCC--ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEc---CCCCC
Confidence 46777765544 367789999999999655566899999999888643211 1112222 2 345554 45677
Q ss_pred EEEEEEEcCC
Q psy2166 764 VYTCRATNKW 773 (805)
Q Consensus 764 ~Y~C~a~N~~ 773 (805)
.|+|+|....
T Consensus 77 ~ytC~V~H~s 86 (100)
T d1muja1 77 IYDCKVEHWG 86 (100)
T ss_dssp CEEEEEECTT
T ss_pred EEEEEEEECC
Confidence 8999998753
|
| >d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=98.18 E-value=3.5e-06 Score=67.84 Aligned_cols=72 Identities=19% Similarity=0.237 Sum_probs=54.1
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEEC--C---EEc---------cCCCCeEEEeeCcEEEEEEcCCCCCCCE
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN--G---KPI---------EASHRIRTVHAFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g---~~l---------~~~~~~~~~~~~~~~~L~i~~v~~~d~G 763 (805)
|.++ .+.+|++|+|.|... ......+.||+- | +.+ ...+++....++....|.|.++..+|+|
T Consensus 8 P~sl-~~~~G~svtl~C~~s--~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa 84 (107)
T d1d5il1 8 PSSM-YASLGERVTITCKAS--QDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMG 84 (107)
T ss_dssp CSEE-EECTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred CCEE-EECCCCCEEEEEEcC--CCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCE
Confidence 3444 789999999999987 555667899972 1 111 1125676677777889999999999999
Q ss_pred EEEEEEEcC
Q psy2166 764 VYTCRATNK 772 (805)
Q Consensus 764 ~Y~C~a~N~ 772 (805)
.|.|.+.+.
T Consensus 85 ~YyCa~~~~ 93 (107)
T d1d5il1 85 IYYCLQYDE 93 (107)
T ss_dssp EEEEEECSS
T ss_pred EEEeeeccC
Confidence 999987654
|
| >d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=98.18 E-value=4.2e-06 Score=68.19 Aligned_cols=75 Identities=13% Similarity=0.233 Sum_probs=54.7
Q ss_pred CCCceecCCCcEEEEEEEecCC-CCCceEEEEE--CCEec------------CCCCceEEEecCcEEEEEEcccccCCCe
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKN-DPNLKIEWIF--NGKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQG 137 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~-~p~~~v~W~k--~g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~G 137 (805)
|+.+.+.+|++|+|.|...... .....+.||| .|+.+ ....++....++..+.|.|.+++.+|+|
T Consensus 7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa 86 (112)
T d1lgva1 7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA 86 (112)
T ss_dssp CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence 3467899999999999977321 1223589998 22221 1234677777778889999999999999
Q ss_pred EEEEEEEeCC
Q psy2166 138 IYTCRAWNLA 147 (805)
Q Consensus 138 ~Y~C~a~n~~ 147 (805)
.|.|.+.+..
T Consensus 87 ~YyCa~~~~~ 96 (112)
T d1lgva1 87 DYYCSSYDGS 96 (112)
T ss_dssp EEEEEEECSS
T ss_pred EEEEeeecCC
Confidence 9999887543
|
| >d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=98.18 E-value=3.4e-06 Score=67.69 Aligned_cols=70 Identities=19% Similarity=0.172 Sum_probs=51.0
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEEC--C---E---------EccCCCCeEEEeeCcEEEEEEcCCCCCCCE
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN--G---K---------PIEASHRIRTVHAFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g---~---------~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G 763 (805)
|..+ .+.+|++|+|.|... . ....+.||+- | + .-....++....++..+.|.|.++..+|+|
T Consensus 7 P~~l-~~~~G~~vtl~C~~s--~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa 82 (104)
T d1yqvl1 7 PAIM-SASPGEKVTMTCSAS--S-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAA 82 (104)
T ss_dssp SSEE-EECTTCCEEEEEEES--S-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred CCeE-EECCCCCEEEEEEeC--C-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCC
Confidence 3444 899999999999875 3 3445799982 1 1 111234566666777889999999999999
Q ss_pred EEEEEEEc
Q psy2166 764 VYTCRATN 771 (805)
Q Consensus 764 ~Y~C~a~N 771 (805)
.|.|.+.+
T Consensus 83 ~YyCa~~~ 90 (104)
T d1yqvl1 83 TYYCQQWG 90 (104)
T ss_dssp EEEEEECS
T ss_pred eEEEEecC
Confidence 99997644
|
| >d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]
Probab=98.17 E-value=4.6e-06 Score=67.96 Aligned_cols=71 Identities=18% Similarity=0.237 Sum_probs=51.8
Q ss_pred CCcccccCCCCeEEEEEEEeecCC------CCeEEEEEEC--CE------------EccCCCCeEEEeeCcEEEEEEcCC
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGD------QTMTVEFLYN--GK------------PIEASHRIRTVHAFGMVVLEILGT 757 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~------p~~~v~W~~~--g~------------~l~~~~~~~~~~~~~~~~L~i~~v 757 (805)
|..+ .+.+|++++|.|.+. +. -...+.|||. |+ .-....++....++....|+|.++
T Consensus 8 P~~v-~~~~G~svtL~C~~s--~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l 84 (113)
T d1q9ra1 8 PSSL-AVSAGEKVTMSCKSS--QSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSV 84 (113)
T ss_dssp CSEE-EEETTSCEEEEEEES--SCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC
T ss_pred CCEE-EECCCCCEEEEEEEC--CCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEeccc
Confidence 3344 789999999999875 32 2246999982 21 111235666667778889999999
Q ss_pred CCCCCEEEEEEEEc
Q psy2166 758 KIEDTGVYTCRATN 771 (805)
Q Consensus 758 ~~~d~G~Y~C~a~N 771 (805)
+.+|+|.|.|.+.+
T Consensus 85 ~~~Dsa~YyCA~~~ 98 (113)
T d1q9ra1 85 QAEDLAVYYCKQSY 98 (113)
T ss_dssp CGGGCEEEEEEECS
T ss_pred ccCCCeEEEecccC
Confidence 99999999998754
|
| >d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=1.2e-06 Score=71.96 Aligned_cols=72 Identities=19% Similarity=0.403 Sum_probs=51.0
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEEC--CEe---cC------------CCCceEEEe--cCcEEEEEEcccccCC
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKP---LE------------LGSRFKTTA--DFGFVTLDLTEVYDRD 135 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~---i~------------~~~~~~~~~--~~~~~~L~I~~~~~~D 135 (805)
.+.|.+|++|+|.|...........+.|+|- +.. +. ..+|+.+.. ..+.++|+|.+++.+|
T Consensus 8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D 87 (113)
T d1smoa_ 8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED 87 (113)
T ss_dssp EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence 4678899999999987632233456889982 211 10 113666654 3467889999999999
Q ss_pred CeEEEEEEEeC
Q psy2166 136 QGIYTCRAWNL 146 (805)
Q Consensus 136 ~G~Y~C~a~n~ 146 (805)
+|.|.|.+...
T Consensus 88 sg~Y~Cav~~~ 98 (113)
T d1smoa_ 88 SGLYQCVIYQP 98 (113)
T ss_dssp CEEEEEEECCT
T ss_pred CceEEEEEECC
Confidence 99999988654
|
| >d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=4.2e-06 Score=65.03 Aligned_cols=73 Identities=11% Similarity=0.154 Sum_probs=55.0
Q ss_pred cCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEE
Q psy2166 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 63 ~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
+++|.+.+.+. ..|..|++|+|.|... .....+.|+|+|.... ...........+.|.+++.+|+|.|+|.
T Consensus 2 ypkPsLsa~P~--~~V~~G~~VTL~C~~~---~~~~~f~L~Keg~~~~----~~~~~~~~~a~F~i~~v~~~~~G~Y~C~ 72 (93)
T d1olla2 2 YDTPTLSVHPG--PEVISGEKVTFYCRLD---TATSMFLLLKEGRSSH----VQRGYGKVQAEFPLGPVTTAHRGTYRCF 72 (93)
T ss_dssp SCCCEEEEESC--SEEETTCEEEEEEECS---SSCSEEEEEEESSSCE----EEEEECSSEEEEEEEECCGGGCEEEEEE
T ss_pred CCCCEEEEeCC--CcccCCCcEEEEECCC---CCCCEEEEEECCCccc----eeecCCCceeEEEecccChhcCceEEEE
Confidence 56788877664 3789999999999976 5567899999886422 1112223456899999999999999997
Q ss_pred EE
Q psy2166 143 AW 144 (805)
Q Consensus 143 a~ 144 (805)
..
T Consensus 73 ~~ 74 (93)
T d1olla2 73 GS 74 (93)
T ss_dssp CE
T ss_pred eE
Confidence 53
|
| >d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.17 E-value=1.8e-06 Score=69.30 Aligned_cols=68 Identities=22% Similarity=0.293 Sum_probs=51.6
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC--CEE------------ccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--GKP------------IEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g~~------------l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
.+.+|++|+|.|... ......+.|||- |+. -....++....+.....|+|.+++.+|+|.|.|.
T Consensus 9 ~~~~G~svtl~C~~~--~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA 86 (103)
T d8faba1 9 SVSPGQTARITCSAN--ALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQ 86 (103)
T ss_dssp EECTTSCEEEEEECT--TGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEEE
T ss_pred EECCCCCEEEEEEeC--CCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEee
Confidence 789999999999976 545567899981 111 1112456666777788999999999999999998
Q ss_pred EEcC
Q psy2166 769 ATNK 772 (805)
Q Consensus 769 a~N~ 772 (805)
+.+.
T Consensus 87 ~~~~ 90 (103)
T d8faba1 87 AWDN 90 (103)
T ss_dssp EEET
T ss_pred ecCC
Confidence 7654
|
| >d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.16 E-value=4.2e-06 Score=68.41 Aligned_cols=84 Identities=15% Similarity=0.190 Sum_probs=56.5
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------------CCCCce--EEEecCcEEEEEEcccccCCC
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------------ELGSRF--KTTADFGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------------~~~~~~--~~~~~~~~~~L~I~~~~~~D~ 136 (805)
|..+.+.+|++|+|.|.... ....+.||+ .|..+ ....++ ........++|+|.+++.+|+
T Consensus 7 P~~~~~~~G~svtl~C~~s~---~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds 83 (115)
T d1ogad1 7 PQFLSIQEGENLTVYCNSSS---VFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDT 83 (115)
T ss_dssp CSEEEEETTCCEEEEEECSS---CCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGC
T ss_pred CCeEEECCCCCEEEEEEECC---CCceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccce
Confidence 44678999999999999762 234799998 22211 111233 334445678999999999999
Q ss_pred eEEEEEEEeCCeeE--EEEEEEEEe
Q psy2166 137 GIYTCRAWNLAGET--FTSTTIYCS 159 (805)
Q Consensus 137 G~Y~C~a~n~~g~~--~~~~~l~V~ 159 (805)
|.|.|.+....+.. -.-+.|+|.
T Consensus 84 a~YyCa~~~~~~~~~FG~GT~LtV~ 108 (115)
T d1ogad1 84 GLYLCAGAGSQGNLIFGKGTKLSVK 108 (115)
T ss_dssp EEEEEEEECTTSSEEECCCEEEEEE
T ss_pred eeEcccccCCCCCcEECCCEEEEEe
Confidence 99999887543321 123556765
|
| >d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=98.16 E-value=4.2e-06 Score=67.75 Aligned_cols=71 Identities=17% Similarity=0.167 Sum_probs=53.6
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEEC--C---EE---------ccCCCCeEEEeeCcEEEEEEcCCCCCCCE
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN--G---KP---------IEASHRIRTVHAFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g---~~---------l~~~~~~~~~~~~~~~~L~i~~v~~~d~G 763 (805)
|..+ .+.+|++++|.|... +.-...+.||+- | +. -....++....++....|+|.+++.+|+|
T Consensus 10 P~~l-~~~~G~svtL~C~~s--~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa 86 (109)
T d1bwwa_ 10 PSSL-SASVGDRVTITCQAS--QDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIA 86 (109)
T ss_dssp CSEE-EECTTCCEEEEEEES--SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred CCEE-EECCCCCEEEEEEec--CCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCc
Confidence 3444 899999999999987 554557899981 1 11 11235666667777889999999999999
Q ss_pred EEEEEEEc
Q psy2166 764 VYTCRATN 771 (805)
Q Consensus 764 ~Y~C~a~N 771 (805)
.|.|.+..
T Consensus 87 ~YyCA~~~ 94 (109)
T d1bwwa_ 87 TYYCQQYQ 94 (109)
T ss_dssp EEEEEECS
T ss_pred eEEEeecC
Confidence 99998765
|
| >d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=98.16 E-value=2.3e-06 Score=70.37 Aligned_cols=85 Identities=12% Similarity=0.060 Sum_probs=57.5
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEE--CC---EEcc------------CCCCeEEEee--CcEEEEEEcCCC
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY--NG---KPIE------------ASHRIRTVHA--FGMVVLEILGTK 758 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g---~~l~------------~~~~~~~~~~--~~~~~L~i~~v~ 758 (805)
+.++ .+.+|++++|.|.... ......+.||| .| +.|. ...|+.+..+ ...+.|+|.+++
T Consensus 7 p~~~-~~~~G~~vtL~C~~~~-~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~ 84 (116)
T d1tvda_ 7 SPDQ-TVASGSEVVLLCTYDT-VYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVR 84 (116)
T ss_dssp SCCE-EEETTCCEEECCEEEC-CSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCC
T ss_pred CCCE-EEcCCCCEEEEEEEcC-CccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCcc
Confidence 3344 7899999999999862 33556899997 12 1110 1245554433 345789999999
Q ss_pred CCCCEEEEEEEEcCCccEEEE----EEEEE
Q psy2166 759 IEDTGVYTCRATNKWGQAEIS----VNLEC 784 (805)
Q Consensus 759 ~~d~G~Y~C~a~N~~G~~~~~----~~l~V 784 (805)
.+|+|.|.|.+....+..... +.|+|
T Consensus 85 ~~Dsg~YyCa~~~~~~~~~~~FG~GT~L~V 114 (116)
T d1tvda_ 85 TEDSATYYCAFTLPPPTDKLIFGKGTRVTV 114 (116)
T ss_dssp GGGCEEEEEEEECTTTTCCEEECCCEEEEE
T ss_pred ccccccceeeEecCCCCceeEECcCEEEEE
Confidence 999999999988765544322 35665
|
| >d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.15 E-value=2.3e-06 Score=70.37 Aligned_cols=75 Identities=12% Similarity=0.171 Sum_probs=53.0
Q ss_pred cCCCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEecC-------------CCCceEEEe--cCcEEEEEEccccc
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPLE-------------LGSRFKTTA--DFGFVTLDLTEVYD 133 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i~-------------~~~~~~~~~--~~~~~~L~I~~~~~ 133 (805)
..+..+.+.+|++|+|.|.... ......+.|||- |+.+. ...++.+.. .+..+.|.|.+++.
T Consensus 4 Q~p~~v~~~~G~~Vtl~C~~~~-~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 82 (115)
T d1fo0a_ 4 QTQTSISVMEKTTVTMDCVYET-QDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI 82 (115)
T ss_dssp CCCCEEEEETTCCEEECCEECC-CCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred ccCCEEEEcCCCCEEEEEEEcC-CCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCc
Confidence 3445688999999999998763 244556899982 22110 113455543 34578999999999
Q ss_pred CCCeEEEEEEEeC
Q psy2166 134 RDQGIYTCRAWNL 146 (805)
Q Consensus 134 ~D~G~Y~C~a~n~ 146 (805)
+|+|.|.|.+...
T Consensus 83 ~Dsa~YyCa~~~~ 95 (115)
T d1fo0a_ 83 EDSAVYFCAMRGD 95 (115)
T ss_dssp GGCEEEEEEEECC
T ss_pred cccccccceeecC
Confidence 9999999998754
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=9.7e-07 Score=71.48 Aligned_cols=69 Identities=14% Similarity=0.103 Sum_probs=49.7
Q ss_pred ccCCCCeEEEEEEEeecCCCC----eEEEEEECCEEccC------------CCCeEEEeeCcEEEEEEcCCCCCCCEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT----MTVEFLYNGKPIEA------------SHRIRTVHAFGMVVLEILGTKIEDTGVYT 766 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~----~~v~W~~~g~~l~~------------~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 766 (805)
++..|++++|.|... .... ..+.|.+++..+.. ..++.... .+..+|+|.+++.+|+|.|.
T Consensus 5 t~~~G~~a~L~C~~~--~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~-~g~~sL~I~~v~~~D~G~Y~ 81 (105)
T d1dr9a1 5 TKEVKEVATLSCGHN--VSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDI-TNNLSIVILALRPSDEGTYE 81 (105)
T ss_dssp EEETTSCEEECCSCC--CCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEES-TTTTEEEECSCCGGGCEEEE
T ss_pred EEEeCCCEEEEEEEC--CcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeecc-CCcEEEEECcCChHHCeEEE
Confidence 788999999999875 3221 47889988765311 23444332 34468999999999999999
Q ss_pred EEEEcCCc
Q psy2166 767 CRATNKWG 774 (805)
Q Consensus 767 C~a~N~~G 774 (805)
|.+.+.-+
T Consensus 82 C~V~~~~~ 89 (105)
T d1dr9a1 82 CVVLKYEK 89 (105)
T ss_dssp EEEEECCT
T ss_pred EEEEeCCC
Confidence 99986544
|
| >d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.15 E-value=4.5e-06 Score=67.65 Aligned_cols=73 Identities=18% Similarity=0.371 Sum_probs=52.8
Q ss_pred CCCceecCCCcEEEEEEEecC---CCCCceEEEEEC--CEec------------CCCCceEEEecCcEEEEEEcccccCC
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPK---NDPNLKIEWIFN--GKPL------------ELGSRFKTTADFGFVTLDLTEVYDRD 135 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~---~~p~~~v~W~k~--g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D 135 (805)
|..+.+.+|+.|+|.|..... ......+.||+. |+.. ....++.....+..+.|.|.+++.+|
T Consensus 8 P~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eD 87 (112)
T d1ncwl1 8 PKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAED 87 (112)
T ss_dssp CSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred CCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCc
Confidence 446789999999999987521 122345899972 2211 12347777777788899999999999
Q ss_pred CeEEEEEEEe
Q psy2166 136 QGIYTCRAWN 145 (805)
Q Consensus 136 ~G~Y~C~a~n 145 (805)
+|.|.|...+
T Consensus 88 sAvYYC~~~~ 97 (112)
T d1ncwl1 88 LGVYYCWQGT 97 (112)
T ss_dssp CEEEEEEECS
T ss_pred CEeEEEEcCC
Confidence 9999996543
|
| >d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]
Probab=98.15 E-value=2.8e-06 Score=68.80 Aligned_cols=72 Identities=19% Similarity=0.214 Sum_probs=53.5
Q ss_pred CCcccccCCCCeEEEEEEEeecCC-CCeEEEEEEC--C---EEc---------cCCCCeEEEeeCcEEEEEEcCCCCCCC
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGD-QTMTVEFLYN--G---KPI---------EASHRIRTVHAFGMVVLEILGTKIEDT 762 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~-p~~~v~W~~~--g---~~l---------~~~~~~~~~~~~~~~~L~i~~v~~~d~ 762 (805)
|..+ .+.+|++++|.|.+. +. ....+.||+- | +.| ...+++....++..+.|+|.++..+|+
T Consensus 8 P~~~-~v~~G~tv~l~C~~~--~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Ds 84 (108)
T d2fx7l1 8 PGTQ-SLSPGERATLSCRAS--QSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDF 84 (108)
T ss_dssp SSEE-EECTTCCEEEEEEES--SCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CCeE-EECCCCCEEEEEEee--cCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheeccc
Confidence 3444 899999999999985 43 3457899982 2 111 123566666777888999999999999
Q ss_pred EEEEEEEEcC
Q psy2166 763 GVYTCRATNK 772 (805)
Q Consensus 763 G~Y~C~a~N~ 772 (805)
|.|-|.+.+.
T Consensus 85 a~YyCa~~~~ 94 (108)
T d2fx7l1 85 AVYYCQQYGQ 94 (108)
T ss_dssp SEEEEEECSS
T ss_pred EEEeeecCCC
Confidence 9999987643
|
| >d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=4.2e-06 Score=66.11 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=53.2
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeE-EEeeCc-EEEEEEcCCCCCCCEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR-TVHAFG-MVVLEILGTKIEDTGVYTC 767 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~-~~~~~~-~~~L~i~~v~~~d~G~Y~C 767 (805)
.||.+...+.. .+..|+.++|.|.+.++-.+...|+|.+||+.+....... ....+| ........+..+|.+.|+|
T Consensus 4 ~~P~V~v~~~~--~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC 81 (100)
T d1k5nb_ 4 RTPKIQVYSRH--PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYAC 81 (100)
T ss_dssp BCCEEEEEESS--CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEE
T ss_pred CCCeeEEEcCC--cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEE
Confidence 56776664333 3577999999999995545667999999999986532211 122233 2223333344567789999
Q ss_pred EEEcCC
Q psy2166 768 RATNKW 773 (805)
Q Consensus 768 ~a~N~~ 773 (805)
++....
T Consensus 82 ~V~H~s 87 (100)
T d1k5nb_ 82 RVNHVT 87 (100)
T ss_dssp EEECTT
T ss_pred EEEeCC
Confidence 998753
|
| >d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=98.14 E-value=5.6e-06 Score=68.15 Aligned_cols=74 Identities=16% Similarity=0.218 Sum_probs=53.3
Q ss_pred cCCCCceecCCCcEEEEEEEecCCCCCceEEEEE--CCEecC-----------------CCCceEEEec-CcEEEEEEcc
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPLE-----------------LGSRFKTTAD-FGFVTLDLTE 130 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i~-----------------~~~~~~~~~~-~~~~~L~I~~ 130 (805)
..|..+.+.+|++|+|.|.... .....+.||| .|+.+. ...++.+..+ +..+.|+|.+
T Consensus 6 Q~P~~~~~~~G~~v~L~C~~~~--~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~ 83 (118)
T d2ij0c1 6 QHPSMVIVKSGTSVKIECRSLD--TNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTS 83 (118)
T ss_dssp EECSEEEECTTCCEEEEEEECS--SCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECS
T ss_pred EcCCeEEEcCCCCEEEEEEEcC--CcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccc
Confidence 3344578899999999999873 3445799998 232110 1236666543 4567899999
Q ss_pred cccCCCeEEEEEEEeC
Q psy2166 131 VYDRDQGIYTCRAWNL 146 (805)
Q Consensus 131 ~~~~D~G~Y~C~a~n~ 146 (805)
++.+|+|.|.|.+...
T Consensus 84 ~~~~Dsa~YyCa~~~~ 99 (118)
T d2ij0c1 84 AHPEDSGFYVCSALAG 99 (118)
T ss_dssp CCGGGCEEEEEEEECS
T ss_pred cccccCceEEEEEecC
Confidence 9999999999998654
|
| >d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.14 E-value=3.9e-06 Score=68.12 Aligned_cols=74 Identities=19% Similarity=0.194 Sum_probs=53.6
Q ss_pred CCCceecCCCcEEEEEEEecC--CCCCceEEEEE--CCEec------------CCCCceEEEecCcEEEEEEcccccCCC
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPK--NDPNLKIEWIF--NGKPL------------ELGSRFKTTADFGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~--~~p~~~v~W~k--~g~~i------------~~~~~~~~~~~~~~~~L~I~~~~~~D~ 136 (805)
|+.+.+.+|++|+|.|..... ......+.||+ .|+.. ....++....++..+.|.|.+++.+|+
T Consensus 8 P~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds 87 (111)
T d1j05a_ 8 PASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV 87 (111)
T ss_dssp CSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGC
T ss_pred CCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccC
Confidence 446788999999999987521 12233489998 23211 123467777777889999999999999
Q ss_pred eEEEEEEEeC
Q psy2166 137 GIYTCRAWNL 146 (805)
Q Consensus 137 G~Y~C~a~n~ 146 (805)
|.|.|.+.+.
T Consensus 88 a~YyCa~~~~ 97 (111)
T d1j05a_ 88 ATYYCQQTNE 97 (111)
T ss_dssp EEEEEEECSS
T ss_pred ccEEEeecCC
Confidence 9999987543
|
| >d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=98.13 E-value=4.9e-06 Score=68.51 Aligned_cols=76 Identities=21% Similarity=0.386 Sum_probs=53.9
Q ss_pred cCCCCceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------------CCCCceEEEec--CcEEEEEEcccccC
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------------ELGSRFKTTAD--FGFVTLDLTEVYDR 134 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------------~~~~~~~~~~~--~~~~~L~I~~~~~~ 134 (805)
+.+..+.|.+|++++|+|.+.+.......+.||+ .|+.+ ...+|+....+ ...+.|.|.+++.+
T Consensus 6 ~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~ 85 (120)
T d1hxma1 6 PEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSER 85 (120)
T ss_dssp ESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGG
T ss_pred ccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccccc
Confidence 3444678999999999999873211234699997 23211 12246766543 45789999999999
Q ss_pred CCeEEEEEEEeC
Q psy2166 135 DQGIYTCRAWNL 146 (805)
Q Consensus 135 D~G~Y~C~a~n~ 146 (805)
|+|.|.|.....
T Consensus 86 Dsa~YyCA~~~~ 97 (120)
T d1hxma1 86 DEGSYYCACDTL 97 (120)
T ss_dssp GCEEEEEEEECC
T ss_pred CCceeecCcccC
Confidence 999999987553
|
| >d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-E group [TaxId: 10090]
Probab=98.12 E-value=7.2e-06 Score=64.78 Aligned_cols=80 Identities=18% Similarity=0.315 Sum_probs=53.6
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc---eEEEeeCC---EEEEEEccCCCCCC
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR---YRTFHDFG---IVILDILYCYEENS 566 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~---~~~~~~~~---~~~L~i~~v~~~d~ 566 (805)
..+|.+.+.++.. +..|+.++|.|.+.++-+....|+|++||+++..+.. .....++. .+.|.+. ..+.
T Consensus 3 ~v~P~V~v~~~~~--~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~ 77 (101)
T d1fnga1 3 NVAPEVTVLSRSP--VNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFL---PSTD 77 (101)
T ss_dssp CBCCEEEEEESSC--CCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEEC---CCTT
T ss_pred CcCCeEEEeCCCc--ccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEc---CCCC
Confidence 3577777654433 4568889999999987667889999999999865421 11122223 3345554 3455
Q ss_pred EEEEEEEEcCC
Q psy2166 567 GVYECRATNKY 577 (805)
Q Consensus 567 G~Y~C~a~n~~ 577 (805)
..|+|.+.+..
T Consensus 78 ~~ytC~V~H~s 88 (101)
T d1fnga1 78 DFYDCEVDHWG 88 (101)
T ss_dssp CCEEEEEECTT
T ss_pred CEEEEEEEECC
Confidence 68999998863
|
| >d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=98.12 E-value=8.5e-06 Score=64.26 Aligned_cols=79 Identities=13% Similarity=0.031 Sum_probs=57.5
Q ss_pred CcCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEE
Q psy2166 62 TFAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTC 141 (805)
Q Consensus 62 ~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 141 (805)
.+++|.+.+.+. ..|..|++|+|.|... .+...+.|+|+|...... +-.....+....+.|..+...|+|.|+|
T Consensus 3 ~~pkPsLsa~P~--~~V~~G~~VTL~C~~~---~~~~~f~L~k~g~~~~~~-~~~~~~~~~~~~f~~~~~~~~~~G~Y~C 76 (99)
T d1nkra2 3 LYEKPSLSAQPG--PTVLAGENVTLSCSSR---SSYDMYHLSREGEAHERR-LPAGPKVNGTFQADFPLGPATHGGTYRC 76 (99)
T ss_dssp SSCCCEEEEESC--SEECTTCEEEEEEEES---SCCSEEEEEETTCSSCEE-EECEEEETTEEEEEEEEEECCSCEEEEE
T ss_pred CCCCCEEEEeCC--CcccCCCeEEEEECCC---CCccEEEEEECCCccccE-EEccccCCccEEEEEeccccccCEEEEE
Confidence 356788877764 3889999999999976 566789999998643321 1112233445567888999999999999
Q ss_pred EEEeC
Q psy2166 142 RAWNL 146 (805)
Q Consensus 142 ~a~n~ 146 (805)
.....
T Consensus 77 ~y~~~ 81 (99)
T d1nkra2 77 FGSFH 81 (99)
T ss_dssp EEEET
T ss_pred EeecC
Confidence 87654
|
| >d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.12 E-value=2e-06 Score=70.86 Aligned_cols=71 Identities=17% Similarity=0.248 Sum_probs=49.4
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC--C-EE--c----------cCCCCeEEEe--eCcEEEEEEcCCCCCCCEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--G-KP--I----------EASHRIRTVH--AFGMVVLEILGTKIEDTGVY 765 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g-~~--l----------~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y 765 (805)
.+.+|++|+|.|... .......+.|||- | .+ | ....++.+.. ..+...|+|.+++.+|+|.|
T Consensus 10 ~~~~G~~Vtl~C~~~-~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y 88 (115)
T d1fo0a_ 10 SVMEKTTVTMDCVYE-TQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAVY 88 (115)
T ss_dssp EEETTCCEEECCEEC-CCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCEEE
T ss_pred EEcCCCCEEEEEEEc-CCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCccccccc
Confidence 899999999999875 1344557899981 1 11 1 0113344432 34568899999999999999
Q ss_pred EEEEEcCCc
Q psy2166 766 TCRATNKWG 774 (805)
Q Consensus 766 ~C~a~N~~G 774 (805)
.|.+....+
T Consensus 89 yCa~~~~~~ 97 (115)
T d1fo0a_ 89 FCAMRGDYG 97 (115)
T ss_dssp EEEEECCCT
T ss_pred cceeecCCC
Confidence 999875443
|
| >d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]
Probab=98.12 E-value=6.1e-06 Score=65.00 Aligned_cols=82 Identities=16% Similarity=0.220 Sum_probs=53.1
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc---eEEEeeCCEEEEEEccCCCCCCEEEE
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR---YRTFHDFGIVILDILYCYEENSGVYE 570 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~---~~~~~~~~~~~L~i~~v~~~d~G~Y~ 570 (805)
.+|.+.+.++.. ...++..+|.|.+.++-++...|+|++||..+..+.. .....++....+....+...+...|+
T Consensus 3 V~P~V~l~~~~~--~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~yt 80 (98)
T d1d5mb1 3 VYPEVTVYPAKT--QPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYT 80 (98)
T ss_dssp BCCEEEEEEC----------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEE
T ss_pred CCCEEEEECCCc--cccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEE
Confidence 467776654433 3457778999999987777889999999999865421 11123344555555566678888999
Q ss_pred EEEEcCC
Q psy2166 571 CRATNKY 577 (805)
Q Consensus 571 C~a~n~~ 577 (805)
|++.+..
T Consensus 81 C~V~H~s 87 (98)
T d1d5mb1 81 CQVEHPS 87 (98)
T ss_dssp EEEECTT
T ss_pred EEEEECC
Confidence 9999864
|
| >d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.11 E-value=3.9e-06 Score=65.86 Aligned_cols=64 Identities=17% Similarity=0.291 Sum_probs=46.6
Q ss_pred CCcEEEEEEEecCCCCCceEEEEE--CCEe---c--------CCCCceEEE--ecCcEEEEEEcccccCCCeEEEEEEEe
Q psy2166 81 AQPLHLEAQVEPKNDPNLKIEWIF--NGKP---L--------ELGSRFKTT--ADFGFVTLDLTEVYDRDQGIYTCRAWN 145 (805)
Q Consensus 81 G~~v~L~C~~~~~~~p~~~v~W~k--~g~~---i--------~~~~~~~~~--~~~~~~~L~I~~~~~~D~G~Y~C~a~n 145 (805)
|++|+|.|... ......+.||| .|+. | ...+|+... .....++|.|.+++.+|+|.|.|.+..
T Consensus 1 G~~vtl~C~~~--~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~ 78 (94)
T d2gj6d1 1 GAIASLNCTYS--DRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTT 78 (94)
T ss_dssp TSCEEEEEEEC--CTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred CccEEEEEEEc--cccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEec
Confidence 89999999987 34556899998 2211 1 122356554 334678999999999999999999875
Q ss_pred C
Q psy2166 146 L 146 (805)
Q Consensus 146 ~ 146 (805)
.
T Consensus 79 ~ 79 (94)
T d2gj6d1 79 D 79 (94)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.11 E-value=6.5e-06 Score=66.67 Aligned_cols=72 Identities=18% Similarity=0.241 Sum_probs=51.6
Q ss_pred CCcccccCCCCeEEEEEEEeecCCC-----CeEEEEEEC--CE------------EccCCCCeEEEeeCcEEEEEEcCCC
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQ-----TMTVEFLYN--GK------------PIEASHRIRTVHAFGMVVLEILGTK 758 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p-----~~~v~W~~~--g~------------~l~~~~~~~~~~~~~~~~L~i~~v~ 758 (805)
|..+ .+.+|++|+|.|.+. +.. ...+.|++- |+ .....+++.....+..+.|+|.++.
T Consensus 8 P~sl-s~~~G~svtl~C~~s--~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~ 84 (112)
T d1ncwl1 8 PKTI-SVTIGQPASISCKSS--QRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVE 84 (112)
T ss_dssp CSEE-EEETTSCEEEEEEES--SCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred CCEE-EECCCCCEEEEEEEC--cccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccc
Confidence 4444 899999999999975 322 346899972 11 1112356665666778899999999
Q ss_pred CCCCEEEEEEEEcC
Q psy2166 759 IEDTGVYTCRATNK 772 (805)
Q Consensus 759 ~~d~G~Y~C~a~N~ 772 (805)
.+|+|.|.|...+.
T Consensus 85 ~eDsAvYYC~~~~~ 98 (112)
T d1ncwl1 85 AEDLGVYYCWQGTH 98 (112)
T ss_dssp GGGCEEEEEEECSS
T ss_pred cCcCEeEEEEcCCC
Confidence 99999999966544
|
| >d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=98.10 E-value=6.6e-06 Score=64.53 Aligned_cols=83 Identities=13% Similarity=0.178 Sum_probs=55.4
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCce-E-EE-eeCCEEEEEEccCCCCCCEEEE
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY-R-TF-HDFGIVILDILYCYEENSGVYE 570 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~-~-~~-~~~~~~~L~i~~v~~~d~G~Y~ 570 (805)
.||.+.+..... ...++.++|.|.+.++-++...++|++||+.+..+... . .. .++.........+..++...|+
T Consensus 2 ~PP~V~v~~~~~--~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~yt 79 (98)
T d1hdmb1 2 RPPSVQVAKTTP--FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYT 79 (98)
T ss_dssp BCCEEEEEECCC--CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEE
T ss_pred CCCEEEEEcCCC--ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEE
Confidence 467777654332 56788999999999877789999999999998654221 1 12 2333333222333456666899
Q ss_pred EEEEcCCc
Q psy2166 571 CRATNKYG 578 (805)
Q Consensus 571 C~a~n~~g 578 (805)
|.+.+...
T Consensus 80 C~V~H~sl 87 (98)
T d1hdmb1 80 CVVEHIGA 87 (98)
T ss_dssp EEEECTTS
T ss_pred EEEEeCCC
Confidence 99998644
|
| >d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.10 E-value=7.7e-06 Score=66.20 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=52.2
Q ss_pred CCcccccCCCCeEEEEEEEeec--CCCCeEEEEEEC--CE------------EccCCCCeEEEeeCcEEEEEEcCCCCCC
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPV--GDQTMTVEFLYN--GK------------PIEASHRIRTVHAFGMVVLEILGTKIED 761 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~--g~p~~~v~W~~~--g~------------~l~~~~~~~~~~~~~~~~L~i~~v~~~d 761 (805)
|..+ .+.+|++|+|.|.+... ......+.||+- |+ ......++.....+..+.|+|.++..+|
T Consensus 8 P~s~-s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~D 86 (111)
T d2gsia1 8 PASL-AVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEED 86 (111)
T ss_dssp CSEE-EEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred CCEE-EECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccC
Confidence 3444 78999999999987510 112235899982 21 1112356766667778899999999999
Q ss_pred CEEEEEEEEcC
Q psy2166 762 TGVYTCRATNK 772 (805)
Q Consensus 762 ~G~Y~C~a~N~ 772 (805)
+|.|.|.+.+.
T Consensus 87 sA~YyCa~~~~ 97 (111)
T d2gsia1 87 AATYYCSHIRE 97 (111)
T ss_dssp CEEEEEEECSS
T ss_pred CceEEEEECCC
Confidence 99999987655
|
| >d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.09 E-value=1.8e-06 Score=70.90 Aligned_cols=72 Identities=11% Similarity=0.159 Sum_probs=49.6
Q ss_pred CcccccCCCCeEEEEEEEeecCCCCeEEEEEE--CC---EEcc----------CCCCeEEEe--eCcEEEEEEcCCCCCC
Q psy2166 699 QHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY--NG---KPIE----------ASHRIRTVH--AFGMVVLEILGTKIED 761 (805)
Q Consensus 699 ~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g---~~l~----------~~~~~~~~~--~~~~~~L~i~~v~~~d 761 (805)
..+ .+.+|++++|.|... ..-...+.||| .| +.|. ...++.... ......|+|.++..+|
T Consensus 8 ~~v-~~~~G~~vtl~C~~s--~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D 84 (115)
T d1j8hd1 8 SHV-SVSEGALVLLRCNYS--SSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSD 84 (115)
T ss_dssp SEE-EEETTSCEEECCEEE--CSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGG
T ss_pred CeE-EEcCCCCEEEEEEeC--CCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccC
Confidence 344 899999999999987 55556899998 12 1110 112222221 2234579999999999
Q ss_pred CEEEEEEEEcCC
Q psy2166 762 TGVYTCRATNKW 773 (805)
Q Consensus 762 ~G~Y~C~a~N~~ 773 (805)
+|.|.|.+....
T Consensus 85 sa~YyCa~~~~~ 96 (115)
T d1j8hd1 85 AAEYFCAVSESP 96 (115)
T ss_dssp CEEEEEEEESST
T ss_pred CccceeeecCCC
Confidence 999999997653
|
| >d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 5 [TaxId: 9606]
Probab=98.09 E-value=4.2e-06 Score=67.35 Aligned_cols=68 Identities=16% Similarity=0.230 Sum_probs=51.7
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC--C---EEc---------cCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--G---KPI---------EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g---~~l---------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
.+.+|++|+|.|... ..-...+.||+- | +.| ....++....++....|.|.++..+|+|.|-|.
T Consensus 11 ~~~~G~svtl~C~~~--~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA 88 (109)
T d1w72l1 11 SVAPGQTARITCGGN--NIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYCQ 88 (109)
T ss_dssp EECTTSCEEEEEECT--TGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred EECCCCCEEEEEEcC--CCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEEE
Confidence 789999999999975 444557999972 2 111 123556666777788999999999999999999
Q ss_pred EEcC
Q psy2166 769 ATNK 772 (805)
Q Consensus 769 a~N~ 772 (805)
+...
T Consensus 89 ~~~~ 92 (109)
T d1w72l1 89 VWDS 92 (109)
T ss_dssp EEET
T ss_pred ecCC
Confidence 8654
|
| >d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.09 E-value=1.9e-06 Score=70.77 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=51.6
Q ss_pred cCCCCceecCCCcEEEEEEEecCCCCCceEEEEE--CCEecC-------------CCCceEEEe--cCcEEEEEEccccc
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPLE-------------LGSRFKTTA--DFGFVTLDLTEVYD 133 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i~-------------~~~~~~~~~--~~~~~~L~I~~~~~ 133 (805)
..+..+.+.+|+.|+|+|.... .....+.||| .|+.+. ...++.... ......|+|.+++.
T Consensus 5 Q~p~~v~~~~G~~vtl~C~~s~--~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 82 (115)
T d1j8hd1 5 QLGSHVSVSEGALVLLRCNYSS--SVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHM 82 (115)
T ss_dssp CSCSEEEEETTSCEEECCEEEC--SSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCG
T ss_pred cCCCeEEEcCCCCEEEEEEeCC--CCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccc
Confidence 3455688999999999999873 4445799998 232110 112333332 23455799999999
Q ss_pred CCCeEEEEEEEeC
Q psy2166 134 RDQGIYTCRAWNL 146 (805)
Q Consensus 134 ~D~G~Y~C~a~n~ 146 (805)
+|+|.|.|.+...
T Consensus 83 ~Dsa~YyCa~~~~ 95 (115)
T d1j8hd1 83 SDAAEYFCAVSES 95 (115)
T ss_dssp GGCEEEEEEEESS
T ss_pred cCCccceeeecCC
Confidence 9999999999764
|
| >d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.08 E-value=4e-06 Score=68.36 Aligned_cols=72 Identities=21% Similarity=0.209 Sum_probs=52.1
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEecC------------CCCceEEEecCcEEEEEEcccccCCCeE
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPLE------------LGSRFKTTADFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i~------------~~~~~~~~~~~~~~~L~I~~~~~~D~G~ 138 (805)
|..+.+.+|++|+|.|...+. .....+.|||- |+.+. ...++.+..+.....|+|.+++.+|+|.
T Consensus 5 P~~~~~~~G~svtl~C~~s~~-~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~ 83 (112)
T d1kgcd1 5 PNSMESNEEEPVHLPCNHSTI-SGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAV 83 (112)
T ss_dssp CSEEEEETTSCEEEEEEESCC-CTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred CCEEEECCCCCEEEEEEEeCC-CccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeeccccccee
Confidence 346788999999999998632 22345899982 32221 1125556666778899999999999999
Q ss_pred EEEEEEe
Q psy2166 139 YTCRAWN 145 (805)
Q Consensus 139 Y~C~a~n 145 (805)
|.|.+..
T Consensus 84 YyCa~~~ 90 (112)
T d1kgcd1 84 YYCILPL 90 (112)
T ss_dssp EEEECCC
T ss_pred EeeeEec
Confidence 9998754
|
| >d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=98.08 E-value=8.6e-06 Score=64.13 Aligned_cols=80 Identities=18% Similarity=0.373 Sum_probs=54.2
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc---eEEEeeCCEE---EEEEccCCCCCC
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR---YRTFHDFGIV---ILDILYCYEENS 566 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~---~~~~~~~~~~---~L~i~~v~~~d~ 566 (805)
..+|.+.+.++.. ...|+..+|.|.+.++-++...++|++||+++..+.. .....++... .|.+. .+|.
T Consensus 3 ~~~P~V~v~~~~~--~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~---~~~~ 77 (99)
T d1uvqa1 3 NEVPEVTVFSKSP--VTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL---PSAD 77 (99)
T ss_dssp CCCCEEEEEESSC--CCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEC---CCTT
T ss_pred CcCCEEEEEcCCc--ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEc---CCCC
Confidence 4677777654433 4568889999999987777899999999999865321 1111223333 35554 4555
Q ss_pred EEEEEEEEcCC
Q psy2166 567 GVYECRATNKY 577 (805)
Q Consensus 567 G~Y~C~a~n~~ 577 (805)
..|+|++.+..
T Consensus 78 ~~ytC~V~H~s 88 (99)
T d1uvqa1 78 EIYDCKVEHWG 88 (99)
T ss_dssp CCEEEEEECTT
T ss_pred CEEEEEEEeCC
Confidence 68999998763
|
| >d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=98.07 E-value=6.3e-06 Score=67.13 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=53.4
Q ss_pred CcccccCCCCeEEEEEEEeecCCC---CeEEEEEEC--CE------------EccCCCCeEEEeeCcEEEEEEcCCCCCC
Q psy2166 699 QHLSNLSEGEIAHFEASLIPVGDQ---TMTVEFLYN--GK------------PIEASHRIRTVHAFGMVVLEILGTKIED 761 (805)
Q Consensus 699 ~~~~~v~~G~~~~l~C~~~~~g~p---~~~v~W~~~--g~------------~l~~~~~~~~~~~~~~~~L~i~~v~~~d 761 (805)
.++ .+.+|++|+|.|... +.. ...+.|||- |+ ......++....+.....|+|.+++.+|
T Consensus 8 ~s~-~~~~G~svtl~C~~~--~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D 84 (112)
T d1lgva1 8 ASV-SGSPGQSITVSCTGV--SSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAED 84 (112)
T ss_dssp SEE-EECTTCCEEEEEECC--CCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGG
T ss_pred CcE-EECCCCCEEEEEEeC--CCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCcccc
Confidence 344 899999999999986 432 246899981 11 1112345666667778899999999999
Q ss_pred CEEEEEEEEcCCc
Q psy2166 762 TGVYTCRATNKWG 774 (805)
Q Consensus 762 ~G~Y~C~a~N~~G 774 (805)
+|.|.|.+.+..+
T Consensus 85 sa~YyCa~~~~~~ 97 (112)
T d1lgva1 85 EADYYCSSYDGSS 97 (112)
T ss_dssp CEEEEEEEECSSS
T ss_pred CEEEEEeeecCCC
Confidence 9999998876443
|
| >d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=98.07 E-value=1.2e-05 Score=66.25 Aligned_cols=73 Identities=19% Similarity=0.297 Sum_probs=52.5
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec--------------C---CCCceEEEec--CcEEEEEEccc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL--------------E---LGSRFKTTAD--FGFVTLDLTEV 131 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i--------------~---~~~~~~~~~~--~~~~~L~I~~~ 131 (805)
+..+.+.+|++++|.|.+++..-....+.||+- |+.+ . ..+||.+..+ ...+.|.|.++
T Consensus 8 ~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l 87 (123)
T d1hxmb1 8 QISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNV 87 (123)
T ss_dssp CSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSC
T ss_pred CCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccccc
Confidence 334677889999999999853223457899982 2111 0 1347877654 45778999999
Q ss_pred ccCCCeEEEEEEEe
Q psy2166 132 YDRDQGIYTCRAWN 145 (805)
Q Consensus 132 ~~~D~G~Y~C~a~n 145 (805)
+.+|+|.|.|.+..
T Consensus 88 ~~~Dsa~YyCA~~~ 101 (123)
T d1hxmb1 88 EKQDIATYYCALWE 101 (123)
T ss_dssp CGGGCEEEEEEEEE
T ss_pred ccccCcEEEEeeeC
Confidence 99999999998754
|
| >d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 2 [TaxId: 9606]
Probab=98.07 E-value=5.5e-06 Score=67.33 Aligned_cols=68 Identities=19% Similarity=0.247 Sum_probs=51.7
Q ss_pred ccCCCCeEEEEEEEeecCC--CCeEEEEEEC--C---E---------EccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGD--QTMTVEFLYN--G---K---------PIEASHRIRTVHAFGMVVLEILGTKIEDTGVYT 766 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~--p~~~v~W~~~--g---~---------~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 766 (805)
.+.+|++++|.|.+. +. ....+.||+- | + .-...+++....++..+.|+|.+++.+|+|.|.
T Consensus 11 ~v~~G~svtl~C~~s--~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~Yy 88 (111)
T d1rzfl1 11 SAAPGQKVTISCSGS--SSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADYY 88 (111)
T ss_dssp EECTTSCEEEEEECC--CCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred EeCCCCCEEEEEEEC--CcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcceE
Confidence 899999999999986 32 2346999971 1 1 111235677777788899999999999999999
Q ss_pred EEEEcC
Q psy2166 767 CRATNK 772 (805)
Q Consensus 767 C~a~N~ 772 (805)
|.+...
T Consensus 89 CA~~~~ 94 (111)
T d1rzfl1 89 CGTWDS 94 (111)
T ss_dssp EEEEET
T ss_pred EeecCC
Confidence 988643
|
| >d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=1e-05 Score=63.32 Aligned_cols=76 Identities=17% Similarity=0.211 Sum_probs=55.0
Q ss_pred cCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEE
Q psy2166 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 63 ~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
+++|.+.+.+. ..|..|++|+|.|... ......+.|+|+|...... .. . ......+.|.+++.+|+|.|+|.
T Consensus 3 ~PkP~Lsa~P~--~~V~~G~~VTL~C~~~--~~~~~~f~L~k~g~~~~~~--~~-~-~~~~a~F~l~~v~~~~~G~Y~C~ 74 (96)
T d1ucta2 3 YGKPFLSADRG--LVLMPGENISLTCSSA--HIPFDRFSLAKEGELSLPQ--HQ-S-GEHPANFSLGPVDLNVSGIYRCY 74 (96)
T ss_dssp SCCCEEEESSC--SEECTTCCCEEEEECS--SSCCSEEEEEETTCSSCCS--EE-E-CSSSEEEECCSCCGGGCEEEEEE
T ss_pred CCCCEEEEeCC--CccCCCCeEEEEEeCC--CCCceEEEEEECCcccceE--Ec-C-CCcccEEEEeccccccCcEEEEE
Confidence 56788877664 3899999999999853 1344579999999643321 11 1 12335799999999999999998
Q ss_pred EEeC
Q psy2166 143 AWNL 146 (805)
Q Consensus 143 a~n~ 146 (805)
....
T Consensus 75 y~~~ 78 (96)
T d1ucta2 75 GWYN 78 (96)
T ss_dssp EECT
T ss_pred EEcC
Confidence 8654
|
| >d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.07 E-value=3.4e-06 Score=68.88 Aligned_cols=72 Identities=19% Similarity=0.302 Sum_probs=48.9
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEecC------CC----Cce---EEEecCcEEEEEEcccccCCCe
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPLE------LG----SRF---KTTADFGFVTLDLTEVYDRDQG 137 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i~------~~----~~~---~~~~~~~~~~L~I~~~~~~D~G 137 (805)
|..+.+.+|++++|.|..+ .....+.|||- |..+. .. ... ........++|.|.+++.+|+|
T Consensus 8 P~~~~v~~G~~vtl~C~~~---~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa 84 (113)
T d1h5ba_ 8 PSALSLHEGTDSALRCNFT---TTMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSG 84 (113)
T ss_dssp CSEEEEETTCCEEEEEEES---SCCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCE
T ss_pred CCEEEEcCCCCEEEEEEEe---cCCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCE
Confidence 4467889999999999987 23457999982 21110 00 111 1112235678999999999999
Q ss_pred EEEEEEEeCC
Q psy2166 138 IYTCRAWNLA 147 (805)
Q Consensus 138 ~Y~C~a~n~~ 147 (805)
.|.|.+....
T Consensus 85 ~YyCa~~~~~ 94 (113)
T d1h5ba_ 85 TYFCAAEASS 94 (113)
T ss_dssp EEEEEEECSS
T ss_pred EEEEEecCCC
Confidence 9999987543
|
| >d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ig alpha Fc receptor, FCARI (CD89) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=5e-06 Score=65.06 Aligned_cols=75 Identities=12% Similarity=0.069 Sum_probs=55.3
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
.+|.+...|.. .|..|++|+|.|... ......+.|+|+|...... . ........+.|.+++.+|+|.|+|.-
T Consensus 4 PkP~Lsa~P~~--~V~~G~~VTL~C~~~--~~~~~~f~L~k~g~~~~~~--~--~~~~~~a~F~l~~v~~~~~G~Y~C~y 75 (96)
T d1ucta2 4 GKPFLSADRGL--VLMPGENISLTCSSA--HIPFDRFSLAKEGELSLPQ--H--QSGEHPANFSLGPVDLNVSGIYRCYG 75 (96)
T ss_dssp CCCEEEESSCS--EECTTCCCEEEEECS--SSCCSEEEEEETTCSSCCS--E--EECSSSEEEECCSCCGGGCEEEEEEE
T ss_pred CCCEEEEeCCC--ccCCCCeEEEEEeCC--CCCceEEEEEECCcccceE--E--cCCCcccEEEEeccccccCcEEEEEE
Confidence 47888888876 499999999999853 2345589999999643222 1 12233457999999999999999987
Q ss_pred EcC
Q psy2166 770 TNK 772 (805)
Q Consensus 770 ~N~ 772 (805)
...
T Consensus 76 ~~~ 78 (96)
T d1ucta2 76 WYN 78 (96)
T ss_dssp ECT
T ss_pred EcC
Confidence 643
|
| >d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: beta2-microglobulin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.06 E-value=6.1e-06 Score=65.26 Aligned_cols=81 Identities=17% Similarity=0.244 Sum_probs=51.8
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEE-EeeCc-EEEEEEcCCCCCCCEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT-VHAFG-MVVLEILGTKIEDTGVYTC 767 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~-~~~~~-~~~L~i~~v~~~d~G~Y~C 767 (805)
.+|.+...+.. ....|+.++|.|.+.++-.+...|+|.+||+.+........ ...++ ........+..++.+.|+|
T Consensus 3 ~~P~V~v~~~~--~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC 80 (99)
T d1lk2b_ 3 KTPQIQVYSRH--PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC 80 (99)
T ss_dssp BCCEEEEEESS--CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEE
T ss_pred CCCEEEEEcCC--CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEE
Confidence 46766664443 35678899999999955445579999999998876433222 22222 2222222334566778999
Q ss_pred EEEcC
Q psy2166 768 RATNK 772 (805)
Q Consensus 768 ~a~N~ 772 (805)
++...
T Consensus 81 ~V~H~ 85 (99)
T d1lk2b_ 81 RVKHD 85 (99)
T ss_dssp EEECT
T ss_pred EEEeC
Confidence 99875
|
| >d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.06 E-value=6.6e-06 Score=66.95 Aligned_cols=67 Identities=18% Similarity=0.254 Sum_probs=48.6
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEE--CCE---Ecc---------CCCCeEEE--eeCcEEEEEEcCCCCCCCEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLY--NGK---PIE---------ASHRIRTV--HAFGMVVLEILGTKIEDTGVYT 766 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g~---~l~---------~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~ 766 (805)
.+.+|++++|.|... +.....+.||+ .|+ .+- ...++... .....+.|.|.++..+|+|.|.
T Consensus 11 ~~~~G~svtl~C~~s--~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy 88 (111)
T d1bd2d1 11 SVQEGRISILNCDYT--NSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVYF 88 (111)
T ss_dssp EEETTSCEEEEEEEC--CTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEE
T ss_pred EEcCCCCEEEEEEeC--CCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEEEE
Confidence 789999999999987 55666789998 221 110 11334332 2345789999999999999999
Q ss_pred EEEEc
Q psy2166 767 CRATN 771 (805)
Q Consensus 767 C~a~N 771 (805)
|.+..
T Consensus 89 Ca~~~ 93 (111)
T d1bd2d1 89 CAAME 93 (111)
T ss_dssp EEEES
T ss_pred eeccC
Confidence 98864
|
| >d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]
Probab=98.06 E-value=6.9e-06 Score=66.60 Aligned_cols=73 Identities=18% Similarity=0.151 Sum_probs=50.8
Q ss_pred CcccccCCCCeEEEEEEEeecC--CCCeEEEEEE--CCE---Ec---------cCCCCeEEEeeCcEEEEEEcCCCCCCC
Q psy2166 699 QHLSNLSEGEIAHFEASLIPVG--DQTMTVEFLY--NGK---PI---------EASHRIRTVHAFGMVVLEILGTKIEDT 762 (805)
Q Consensus 699 ~~~~~v~~G~~~~l~C~~~~~g--~p~~~v~W~~--~g~---~l---------~~~~~~~~~~~~~~~~L~i~~v~~~d~ 762 (805)
..+ .+.+|++|+|.|.+.... .-...+.||+ .|+ .| ....++....++..+.|.|.+++.+|+
T Consensus 9 ~~l-~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds 87 (111)
T d1j05a_ 9 ASL-AVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDV 87 (111)
T ss_dssp SEE-ECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGC
T ss_pred CEE-EECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccC
Confidence 344 789999999999875111 1223499998 222 11 122455555666788999999999999
Q ss_pred EEEEEEEEcC
Q psy2166 763 GVYTCRATNK 772 (805)
Q Consensus 763 G~Y~C~a~N~ 772 (805)
|.|.|.+.+.
T Consensus 88 a~YyCa~~~~ 97 (111)
T d1j05a_ 88 ATYYCQQTNE 97 (111)
T ss_dssp EEEEEEECSS
T ss_pred ccEEEeecCC
Confidence 9999987654
|
| >d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=98.04 E-value=9.1e-06 Score=66.64 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=51.6
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEEC-----CEec------C-----------CCCceEEEe--cCcEEEEE
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN-----GKPL------E-----------LGSRFKTTA--DFGFVTLD 127 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~-----g~~i------~-----------~~~~~~~~~--~~~~~~L~ 127 (805)
.|..+.+.+|++|+|.|.+... .....+.|||- ++.+ . ...|+.... +...++|+
T Consensus 4 ~P~~~~v~~G~sv~l~C~~~~~-~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~ 82 (115)
T d2atpb1 4 TPSSLLVQTNHTAKMSCEVKSI-SKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLS 82 (115)
T ss_dssp ECSEEEECTTSCEEEEEECCSS-CCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEE
T ss_pred eCCcEEEcCCCCEEEEEEEeCC-CCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEe
Confidence 3446789999999999998732 34457899972 2211 0 122444333 34567899
Q ss_pred EcccccCCCeEEEEEEEeC
Q psy2166 128 LTEVYDRDQGIYTCRAWNL 146 (805)
Q Consensus 128 I~~~~~~D~G~Y~C~a~n~ 146 (805)
|.+++.+|+|.|.|.+...
T Consensus 83 I~~~~~~Dsg~Y~Ca~~~~ 101 (115)
T d2atpb1 83 IMNVKPEDSDFYFCATVGS 101 (115)
T ss_dssp ECSCCGGGCEEEEEEEECS
T ss_pred ecccCCCCCcEEEEeEcCC
Confidence 9999999999999988644
|
| >d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.04 E-value=4.7e-06 Score=67.06 Aligned_cols=67 Identities=18% Similarity=0.192 Sum_probs=50.8
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEE--CCE---Ec---------cCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLY--NGK---PI---------EASHRIRTVHAFGMVVLEILGTKIEDTGVYTCR 768 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g~---~l---------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 768 (805)
.+.+|++++|.|... ......+.||+ .|+ .| .-.+++....++....|.|.+++.+|+|.|-|.
T Consensus 10 ~~~~G~svtl~C~~~--~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~YyCA 87 (108)
T d1nfde1 10 SVTVGETVKITCSGD--QLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCL 87 (108)
T ss_dssp EEETTSCCCEEEEET--TGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEE
T ss_pred EECCCCCEEEEEECC--CCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEEEE
Confidence 788999999999875 44445789998 121 11 112467777777788999999999999999998
Q ss_pred EEc
Q psy2166 769 ATN 771 (805)
Q Consensus 769 a~N 771 (805)
+.-
T Consensus 88 ~~~ 90 (108)
T d1nfde1 88 SSY 90 (108)
T ss_dssp EEE
T ss_pred eec
Confidence 763
|
| >d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialoadhesin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.04 E-value=6.7e-06 Score=68.10 Aligned_cols=78 Identities=13% Similarity=0.125 Sum_probs=52.4
Q ss_pred ecCCCCceecCCCcEEEEEEEecC----CCCCceEEEEECCE----ec-----------CCCCceEEEec--CcEEEEEE
Q psy2166 70 VPLKPEFKLGEAQPLHLEAQVEPK----NDPNLKIEWIFNGK----PL-----------ELGSRFKTTAD--FGFVTLDL 128 (805)
Q Consensus 70 ~~~~~~~~v~~G~~v~L~C~~~~~----~~p~~~v~W~k~g~----~i-----------~~~~~~~~~~~--~~~~~L~I 128 (805)
+..|..+.+.+|+.|+|+|....+ ......+.|++... .+ ....|+.+..+ .+.++|+|
T Consensus 4 V~~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I 83 (118)
T d1qfoa_ 4 VSSPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLL 83 (118)
T ss_dssp EECCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEE
T ss_pred EECCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEE
Confidence 344557899999999999998632 11223466777321 11 12346666543 35678999
Q ss_pred cccccCCCeEEEEEEEeCC
Q psy2166 129 TEVYDRDQGIYTCRAWNLA 147 (805)
Q Consensus 129 ~~~~~~D~G~Y~C~a~n~~ 147 (805)
.+++.+|+|.|.|++....
T Consensus 84 ~~v~~~DsG~Y~C~v~~~~ 102 (118)
T d1qfoa_ 84 KDLKPEDSGTYNFRFEISD 102 (118)
T ss_dssp CSCCGGGCEEEEEEEECC-
T ss_pred CCCChhHCEEEEEEEEeCC
Confidence 9999999999999997653
|
| >d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Mouse (Mus musculus), I-E group [TaxId: 10090]
Probab=98.03 E-value=1.1e-05 Score=63.63 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=50.9
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCe--EEEeeCc----EEEEEEcCCCCCCCE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI--RTVHAFG----MVVLEILGTKIEDTG 763 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~--~~~~~~~----~~~L~i~~v~~~d~G 763 (805)
.||.+...+.. .+..|+.++|.|.+.++-.+...|+|++||+.+..+... .....++ .+.|.+.. .+..
T Consensus 4 v~P~V~v~~~~--~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~ 78 (101)
T d1fnga1 4 VAPEVTVLSRS--PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFLP---STDD 78 (101)
T ss_dssp BCCEEEEEESS--CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEECC---CTTC
T ss_pred cCCeEEEeCCC--cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEcC---CCCC
Confidence 57777765433 356788899999999554456799999999988654111 1122222 24566644 3445
Q ss_pred EEEEEEEcC
Q psy2166 764 VYTCRATNK 772 (805)
Q Consensus 764 ~Y~C~a~N~ 772 (805)
.|+|.+...
T Consensus 79 ~ytC~V~H~ 87 (101)
T d1fnga1 79 FYDCEVDHW 87 (101)
T ss_dssp CEEEEEECT
T ss_pred EEEEEEEEC
Confidence 799999875
|
| >d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Hemochromatosis protein Hfe, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=8.7e-06 Score=63.33 Aligned_cols=80 Identities=9% Similarity=0.074 Sum_probs=51.6
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCC--CceEEE--eeCCEEEEEEccCCCCCCEE
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHG--HRYRTF--HDFGIVILDILYCYEENSGV 568 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~--~~~~~~--~~~~~~~L~i~~v~~~d~G~ 568 (805)
+.||.+.+.. ...++.++|.|.+.++-++...++|++||+.+..+ ...... .++.........+...|...
T Consensus 2 ~vpP~V~v~~-----~~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ 76 (94)
T d1de4a1 2 QVPPLVKVTH-----HVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQR 76 (94)
T ss_dssp CBCCEEEEEE-----EECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGG
T ss_pred CCCCEEEEEE-----cCCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCE
Confidence 3567776521 23467799999999876778899999999998532 111222 22233333333344566778
Q ss_pred EEEEEEcCC
Q psy2166 569 YECRATNKY 577 (805)
Q Consensus 569 Y~C~a~n~~ 577 (805)
|+|.+.+..
T Consensus 77 ytC~V~H~s 85 (94)
T d1de4a1 77 YTCQVEHPG 85 (94)
T ss_dssp EEEEEECTT
T ss_pred EEEEEEeCC
Confidence 999999863
|
| >d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.03 E-value=6.4e-06 Score=67.42 Aligned_cols=70 Identities=19% Similarity=0.161 Sum_probs=51.9
Q ss_pred CcccccCCCCeEEEEEEEeecCCCCeEEEEEEC--C---EE---------ccCCCCeEEEeeCcEEEEEEcCCCCCCCEE
Q psy2166 699 QHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN--G---KP---------IEASHRIRTVHAFGMVVLEILGTKIEDTGV 764 (805)
Q Consensus 699 ~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g---~~---------l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 764 (805)
..+ .+.+|++++|.|... +.-...+.||+- | +. .....++....++..+.|.|.+++.+|+|.
T Consensus 9 ~sv-~~~~G~svtl~C~~s--~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsav 85 (119)
T d1f3rb2 9 SLL-SASVGDRVTLSCKGS--QNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVAT 85 (119)
T ss_dssp SEE-CCCTTCCEEEEEECS--SCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSE
T ss_pred CEE-EECCCCCEEEEEEeC--CCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeE
Confidence 344 899999999999976 544557999982 1 11 112345555556677899999999999999
Q ss_pred EEEEEEc
Q psy2166 765 YTCRATN 771 (805)
Q Consensus 765 Y~C~a~N 771 (805)
|.|.+.+
T Consensus 86 YyCa~~~ 92 (119)
T d1f3rb2 86 YFCYQYN 92 (119)
T ss_dssp EEEEEES
T ss_pred EEeeccC
Confidence 9998765
|
| >d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD80, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=1.8e-05 Score=61.79 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=52.9
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEee-Cc----EEEEEEcCCCCCCCEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA-FG----MVVLEILGTKIEDTGV 764 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-~~----~~~L~i~~v~~~d~G~ 764 (805)
.+|.+.... ...|+.++|.|.+.+ ++|.+.|+|++||+.+..........+ +| .+.|.|. ..+...
T Consensus 4 ~~P~V~~~~-----~~s~~~~~L~C~~~g-~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~ 74 (95)
T d1dr9a2 4 PTPSISDFE-----IPTSNIRRIICSTSG-GFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHS 74 (95)
T ss_dssp CCCEEEEEE-----CSSTTEEEEEEEEEE-ESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEE
T ss_pred CCCEEEecc-----cCCCCEEEEEEEECc-ccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccce
Confidence 467666432 235788999999993 469999999999998876543332222 23 2356664 345679
Q ss_pred EEEEEEcCCccEE
Q psy2166 765 YTCRATNKWGQAE 777 (805)
Q Consensus 765 Y~C~a~N~~G~~~ 777 (805)
|+|.+.+..-...
T Consensus 75 ~tC~V~h~~l~~~ 87 (95)
T d1dr9a2 75 FMCLIKYGHLRVN 87 (95)
T ss_dssp EEEEEEETTCCEE
T ss_pred EEEEEEecCCCCc
Confidence 9999988754443
|
| >d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.02 E-value=5.8e-06 Score=67.06 Aligned_cols=74 Identities=16% Similarity=0.230 Sum_probs=52.2
Q ss_pred cCCCCceecCCCcEEEEEEEecCCCCCceEEEEE--CCEecC------------CCCceEEEec--CcEEEEEEcccccC
Q psy2166 71 PLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPLE------------LGSRFKTTAD--FGFVTLDLTEVYDR 134 (805)
Q Consensus 71 ~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i~------------~~~~~~~~~~--~~~~~L~I~~~~~~ 134 (805)
..+..+.+.+|+.|+|.|.... .....+.||| .|+.+. ...++....+ +..+.|.|.+++.+
T Consensus 5 Q~p~~~~~~~G~~vtl~C~~~~--~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~ 82 (110)
T d1ac6a_ 5 QTEGQVALSEEDFLTIHCNYSA--SGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQES 82 (110)
T ss_dssp ECCSEEEEETTEEEEECEEEEC--SSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGG
T ss_pred eCCCeEEECCCCCEEEEEEecC--CCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcC
Confidence 3455678999999999998873 3334699998 232110 1234544432 45678999999999
Q ss_pred CCeEEEEEEEeC
Q psy2166 135 DQGIYTCRAWNL 146 (805)
Q Consensus 135 D~G~Y~C~a~n~ 146 (805)
|+|.|.|.+...
T Consensus 83 Dsa~YyCA~~~~ 94 (110)
T d1ac6a_ 83 DSAVYYCALSGG 94 (110)
T ss_dssp GCEEEEEEEEET
T ss_pred CCcccceeecCC
Confidence 999999988754
|
| >d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C2 set domains domain: CD80, second domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=2.2e-05 Score=61.36 Aligned_cols=70 Identities=11% Similarity=0.055 Sum_probs=49.0
Q ss_pred cCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEee-CC----EEEEEEccCCCCCCEEEEEEEEcCCcceEE
Q psy2166 509 KEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD-FG----IVILDILYCYEENSGVYECRATNKYGSDVT 582 (805)
Q Consensus 509 ~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-~~----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 582 (805)
..|+.++|.|.+.+ ..|.+.|+|++||+.+..........+ ++ .+.|.|. ..+...|+|.+.+..-....
T Consensus 14 ~s~~~~~L~C~~~g-~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~~~~ 88 (95)
T d1dr9a2 14 PTSNIRRIICSTSG-GFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLRVNQ 88 (95)
T ss_dssp SSTTEEEEEEEEEE-ESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCCEEE
T ss_pred CCCCEEEEEEEECc-ccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCCCcE
Confidence 46788999999997 478889999999998865433322221 22 2346665 45677999999987655443
|
| >d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=98.01 E-value=7.9e-06 Score=66.73 Aligned_cols=84 Identities=20% Similarity=0.237 Sum_probs=54.2
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEE--CCE---E---------ccCCCCeEE--EeeCcEEEEEEcCCCCCC
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY--NGK---P---------IEASHRIRT--VHAFGMVVLEILGTKIED 761 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g~---~---------l~~~~~~~~--~~~~~~~~L~i~~v~~~d 761 (805)
|..+ .+.+|++++|.|... +. ...+.||+ .|+ . .....++.. ........|.|.++..+|
T Consensus 7 P~~~-~~~~G~svtl~C~~s--~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D 82 (115)
T d1ogad1 7 PQFL-SIQEGENLTVYCNSS--SV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGD 82 (115)
T ss_dssp CSEE-EEETTCCEEEEEECS--SC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGG
T ss_pred CCeE-EECCCCCEEEEEEEC--CC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccc
Confidence 3344 899999999999976 43 34799998 111 0 011123322 223456889999999999
Q ss_pred CEEEEEEEEcCCccE--EEEEEEEEE
Q psy2166 762 TGVYTCRATNKWGQA--EISVNLECV 785 (805)
Q Consensus 762 ~G~Y~C~a~N~~G~~--~~~~~l~V~ 785 (805)
+|.|.|.+....+.. -.-++|+|.
T Consensus 83 sa~YyCa~~~~~~~~~FG~GT~LtV~ 108 (115)
T d1ogad1 83 TGLYLCAGAGSQGNLIFGKGTKLSVK 108 (115)
T ss_dssp CEEEEEEEECTTSSEEECCCEEEEEE
T ss_pred eeeEcccccCCCCCcEECCCEEEEEe
Confidence 999999987554421 122356664
|
| >d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.01 E-value=9e-06 Score=65.46 Aligned_cols=68 Identities=16% Similarity=0.154 Sum_probs=51.3
Q ss_pred ccCCCCeEEEEEEEeecCCCC---eEEEEEE---CCEE-----------ccCCCCeEEEeeCcEEEEEEcCCCCCCCEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT---MTVEFLY---NGKP-----------IEASHRIRTVHAFGMVVLEILGTKIEDTGVY 765 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~---~~v~W~~---~g~~-----------l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y 765 (805)
.+.+|++++|.|.+. +... -.|.||+ +..+ -...+++....++..+.|.|.++..+|+|.|
T Consensus 11 svs~G~tvtl~C~~s--~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Y 88 (110)
T d1oaql_ 11 TTSPGETVTLTCRSS--TGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY 88 (110)
T ss_dssp EECTTCEEEEEEEET--TBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred EeCCCCCEEEEEEEc--CCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeE
Confidence 789999999999986 4322 2488998 2211 1123567777777889999999999999999
Q ss_pred EEEEEcC
Q psy2166 766 TCRATNK 772 (805)
Q Consensus 766 ~C~a~N~ 772 (805)
.|.+...
T Consensus 89 yCa~~~~ 95 (110)
T d1oaql_ 89 FCALWYS 95 (110)
T ss_dssp EEEEEET
T ss_pred EEEcccC
Confidence 9997653
|
| >d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=1.6e-05 Score=62.48 Aligned_cols=79 Identities=11% Similarity=0.105 Sum_probs=53.2
Q ss_pred cCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCce--EEEecCcEEEEEEcccccCCCeEEE
Q psy2166 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRF--KTTADFGFVTLDLTEVYDRDQGIYT 140 (805)
Q Consensus 63 ~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~--~~~~~~~~~~L~I~~~~~~D~G~Y~ 140 (805)
+++|.+...+.+ .|..|++|+|.|... .....+.++|+|......... .....+....+.|.+++.+|+|.|+
T Consensus 2 ~pkPsLsa~P~~--~v~~G~~VTL~C~~~---~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~ 76 (98)
T d1ugna2 2 YIKPTLSAQPSP--VVNSGGNVTLQCDSQ---VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYR 76 (98)
T ss_dssp SCCCEEEEESCS--EEETTCCEEEEEECS---SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEE
T ss_pred CCCCEEEeeCCC--ccCCCCcEEEEeCCC---CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEE
Confidence 567888777753 799999999999976 556689999988754322110 1111234457999999999999999
Q ss_pred EEEEeC
Q psy2166 141 CRAWNL 146 (805)
Q Consensus 141 C~a~n~ 146 (805)
|.....
T Consensus 77 C~y~~~ 82 (98)
T d1ugna2 77 CYAYDS 82 (98)
T ss_dssp EEEECT
T ss_pred EeeEcC
Confidence 987654
|
| >d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=3.3e-06 Score=69.18 Aligned_cols=69 Identities=19% Similarity=0.344 Sum_probs=48.1
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC--C---EEccC------------CCCeEEEe--eCcEEEEEEcCCCCCCCE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--G---KPIEA------------SHRIRTVH--AFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g---~~l~~------------~~~~~~~~--~~~~~~L~i~~v~~~d~G 763 (805)
.+.+|++++|.|.+.........+.|+|- | ..+.. ..|+.+.. ..+.++|+|.+++.+|+|
T Consensus 10 ~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Dsg 89 (113)
T d1smoa_ 10 ELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDSG 89 (113)
T ss_dssp ECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred EEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccCc
Confidence 78999999999997521224457889982 2 11110 13555543 345788999999999999
Q ss_pred EEEEEEEc
Q psy2166 764 VYTCRATN 771 (805)
Q Consensus 764 ~Y~C~a~N 771 (805)
.|.|.+..
T Consensus 90 ~Y~Cav~~ 97 (113)
T d1smoa_ 90 LYQCVIYQ 97 (113)
T ss_dssp EEEEEECC
T ss_pred eEEEEEEC
Confidence 99998743
|
| >d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=98.00 E-value=1.3e-05 Score=64.95 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=48.7
Q ss_pred ccCCCCeEEEEEEEeecCC-----CCeEEEEEEC--CE------------EccCCCCeEEEeeCcEEEEEEcCCCCCCCE
Q psy2166 703 NLSEGEIAHFEASLIPVGD-----QTMTVEFLYN--GK------------PIEASHRIRTVHAFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~-----p~~~v~W~~~--g~------------~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G 763 (805)
.+.+|++|+|.|.+. +. -...+.||+- |+ ......++....++....|.|.+++.+|+|
T Consensus 12 sv~~G~svtL~C~~s--~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~DsA 89 (112)
T d1mjul1 12 PVTPGESVSISCRSS--KSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVG 89 (112)
T ss_dssp EECTTSCEEEEEEES--SCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGGCE
T ss_pred EECCCCCEEEEEEEC--CCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccCCc
Confidence 789999999999986 42 2457899971 11 111234566667777889999999999999
Q ss_pred EEEEEE
Q psy2166 764 VYTCRA 769 (805)
Q Consensus 764 ~Y~C~a 769 (805)
.|.|..
T Consensus 90 vYyCa~ 95 (112)
T d1mjul1 90 VYYCLQ 95 (112)
T ss_dssp EEEEEE
T ss_pred eEEEEe
Confidence 999954
|
| >d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=98.00 E-value=6.3e-06 Score=67.11 Aligned_cols=67 Identities=19% Similarity=0.234 Sum_probs=47.6
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC--CE---Ecc---------CCCCeEE--EeeCcEEEEEEcCCCCCCCEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--GK---PIE---------ASHRIRT--VHAFGMVVLEILGTKIEDTGVYT 766 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g~---~l~---------~~~~~~~--~~~~~~~~L~i~~v~~~d~G~Y~ 766 (805)
.+.+|++++|.|... +.-...+.|||- |+ .+. ...+... ......+.|.|.++..+|+|.|.
T Consensus 10 ~~~~G~~vtl~C~~~--~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy 87 (110)
T d1u3ha1 10 TVWEGETAILNCSYE--NSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYF 87 (110)
T ss_dssp EEETTSCEEEEEEEC--CTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEEE
T ss_pred EEcCCCCEEEEEEec--CCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeEe
Confidence 789999999999987 555567999982 21 110 1122222 23345678999999999999999
Q ss_pred EEEEc
Q psy2166 767 CRATN 771 (805)
Q Consensus 767 C~a~N 771 (805)
|.+.-
T Consensus 88 Ca~~~ 92 (110)
T d1u3ha1 88 CAASA 92 (110)
T ss_dssp ECCEE
T ss_pred eeecC
Confidence 99863
|
| >d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=98.00 E-value=1.3e-05 Score=62.87 Aligned_cols=80 Identities=16% Similarity=0.134 Sum_probs=52.6
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCe-E-EEeeCc-E---EEEEEcCCCCCCCE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI-R-TVHAFG-M---VVLEILGTKIEDTG 763 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~-~-~~~~~~-~---~~L~i~~v~~~d~G 763 (805)
.||.+...... ....++.++|.|.+.++-.+...|+|++||+.+..+... . ....++ . +.|.| ..++..
T Consensus 2 ~PP~V~v~~~~--~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v---~~~~~~ 76 (98)
T d1hdmb1 2 RPPSVQVAKTT--PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLAL---TPSYGD 76 (98)
T ss_dssp BCCEEEEEECC--CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEE---CCCTTC
T ss_pred CCCEEEEEcCC--CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEc---CCCCCC
Confidence 36666664433 356788999999999655567899999999988654321 1 122223 2 23555 345566
Q ss_pred EEEEEEEcCCc
Q psy2166 764 VYTCRATNKWG 774 (805)
Q Consensus 764 ~Y~C~a~N~~G 774 (805)
.|+|.+.+..-
T Consensus 77 ~ytC~V~H~sl 87 (98)
T d1hdmb1 77 TYTCVVEHIGA 87 (98)
T ss_dssp CEEEEEECTTS
T ss_pred EEEEEEEeCCC
Confidence 89999988643
|
| >d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of NK receptor NKp46 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=7.8e-06 Score=63.46 Aligned_cols=71 Identities=15% Similarity=0.158 Sum_probs=54.4
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
.+|.|...|... |..|++|+|.|... .+...+.|+|+|..... ..........+.|.+|+.+|+|.|+|.-
T Consensus 3 pkPsLsa~P~~~--V~~G~~VTL~C~~~---~~~~~f~L~Keg~~~~~----~~~~~~~~a~F~i~~v~~~~~G~Y~C~~ 73 (93)
T d1olla2 3 DTPTLSVHPGPE--VISGEKVTFYCRLD---TATSMFLLLKEGRSSHV----QRGYGKVQAEFPLGPVTTAHRGTYRCFG 73 (93)
T ss_dssp CCCEEEEESCSE--EETTCEEEEEEECS---SSCSEEEEEEESSSCEE----EEEECSSEEEEEEEECCGGGCEEEEEEC
T ss_pred CCCEEEEeCCCc--ccCCCcEEEEECCC---CCCCEEEEEECCCccce----eecCCCceeEEEecccChhcCceEEEEe
Confidence 478888888765 89999999999963 56678999998853221 1122345668999999999999999974
|
| >d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD8 species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.99 E-value=7.3e-06 Score=67.25 Aligned_cols=67 Identities=18% Similarity=0.259 Sum_probs=47.3
Q ss_pred ccCCCCeEEEEEEEeecC-CCCeEEEEEEC-----CEEcc-----------------CCCCeEEEe--eCcEEEEEEcCC
Q psy2166 703 NLSEGEIAHFEASLIPVG-DQTMTVEFLYN-----GKPIE-----------------ASHRIRTVH--AFGMVVLEILGT 757 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g-~p~~~v~W~~~-----g~~l~-----------------~~~~~~~~~--~~~~~~L~i~~v 757 (805)
.+.+|++|+|.|.+. + .....+.|+|- ++.+. ...++.... +.....|+|.++
T Consensus 9 ~v~~G~sv~l~C~~~--~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 86 (115)
T d2atpb1 9 LVQTNHTAKMSCEVK--SISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMNV 86 (115)
T ss_dssp EECTTSCEEEEEECC--SSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECSC
T ss_pred EEcCCCCEEEEEEEe--CCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeeccc
Confidence 899999999999987 4 34567999972 23210 122333222 233568999999
Q ss_pred CCCCCEEEEEEEEc
Q psy2166 758 KIEDTGVYTCRATN 771 (805)
Q Consensus 758 ~~~d~G~Y~C~a~N 771 (805)
+.+|+|.|.|.+.+
T Consensus 87 ~~~Dsg~Y~Ca~~~ 100 (115)
T d2atpb1 87 KPEDSDFYFCATVG 100 (115)
T ss_dssp CGGGCEEEEEEEEC
T ss_pred CCCCCcEEEEeEcC
Confidence 99999999998753
|
| >d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.99 E-value=9.4e-06 Score=65.95 Aligned_cols=71 Identities=20% Similarity=0.294 Sum_probs=50.0
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec-------------C---CCCceEEEec-CcEEEEEEccccc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL-------------E---LGSRFKTTAD-FGFVTLDLTEVYD 133 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i-------------~---~~~~~~~~~~-~~~~~L~I~~~~~ 133 (805)
|..+.+.+|++|+|.|... .....+.|||- |+.+ . ...++..... +..+.|+|.+++.
T Consensus 6 P~~~~~~~G~svtl~C~~~---~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~ 82 (111)
T d2esve1 6 PSHSVIEKGQTVTLRCDPI---SGHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAEL 82 (111)
T ss_dssp CSEEEEETTCCEEEEEECC---TTCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCG
T ss_pred CCEEEECCCCCEEEEEEEC---CCCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCccc
Confidence 3356789999999999865 23457999972 2111 0 1235655543 3457899999999
Q ss_pred CCCeEEEEEEEeC
Q psy2166 134 RDQGIYTCRAWNL 146 (805)
Q Consensus 134 ~D~G~Y~C~a~n~ 146 (805)
+|+|.|.|.+...
T Consensus 83 ~Dsa~YyCa~~~~ 95 (111)
T d2esve1 83 EDSGVYFCASSQD 95 (111)
T ss_dssp GGCEEEEEEEESS
T ss_pred CCCceEEEeeeCC
Confidence 9999999987643
|
| >d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain lambda variable domain, VL-lambda species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.98 E-value=4.5e-06 Score=67.91 Aligned_cols=72 Identities=18% Similarity=0.248 Sum_probs=50.7
Q ss_pred CCcccccCCCCeEEEEEEEeecCCC--CeEEEEEEC--CEE------------ccCCCCeEEEe--eCcEEEEEEcCCCC
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQ--TMTVEFLYN--GKP------------IEASHRIRTVH--AFGMVVLEILGTKI 759 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p--~~~v~W~~~--g~~------------l~~~~~~~~~~--~~~~~~L~i~~v~~ 759 (805)
|.++ .+.+|++++|.|.+. +.- ...+.|+|- |+. -...+++.... ....+.|+|.+++.
T Consensus 7 P~s~-sv~~G~svtL~C~~s--~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~ 83 (111)
T d1cd0a_ 7 PHSV-SESPGKTVTISCTRS--SGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKT 83 (111)
T ss_dssp CSEE-EECTTSCEEEEEEES--SSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCG
T ss_pred CCee-EECCCCCEEEEEEEC--CCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCc
Confidence 3344 899999999999987 433 345899982 211 01124555433 35578999999999
Q ss_pred CCCEEEEEEEEcC
Q psy2166 760 EDTGVYTCRATNK 772 (805)
Q Consensus 760 ~d~G~Y~C~a~N~ 772 (805)
+|+|.|.|.+.+.
T Consensus 84 ~Dsa~YyCA~~~~ 96 (111)
T d1cd0a_ 84 EDEADYYCQSYDA 96 (111)
T ss_dssp GGCEEEEEEEEET
T ss_pred ccCcEEEEeeccC
Confidence 9999999987654
|
| >d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.98 E-value=7.4e-06 Score=65.76 Aligned_cols=73 Identities=21% Similarity=0.376 Sum_probs=53.0
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEEC--CEe----cCC-----------CCceEEEec--CcEEEEEEcccccCC
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKP----LEL-----------GSRFKTTAD--FGFVTLDLTEVYDRD 135 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~----i~~-----------~~~~~~~~~--~~~~~L~I~~~~~~D 135 (805)
...+.+|++|+|.|..++.......+.|+|. |+. +.. .+|+.+..+ .+.++|+|.+++.+|
T Consensus 4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eD 83 (110)
T d1u9ka_ 4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTD 83 (110)
T ss_dssp EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCC
Confidence 4578999999999998743234457889983 321 110 136777654 467899999999999
Q ss_pred CeEEEEEEEeCC
Q psy2166 136 QGIYTCRAWNLA 147 (805)
Q Consensus 136 ~G~Y~C~a~n~~ 147 (805)
+|.|.|......
T Consensus 84 sa~YyCa~~~~~ 95 (110)
T d1u9ka_ 84 SGLYRCVIYHPP 95 (110)
T ss_dssp CEEEEEEEECTT
T ss_pred CEEEEEEEeCCC
Confidence 999999986543
|
| >d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=97.98 E-value=8.2e-06 Score=64.34 Aligned_cols=76 Identities=13% Similarity=0.122 Sum_probs=56.0
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
.+|.+...|... |..|++|+|.|.. ..+...+.|+|+|........ ......+...+.|..+...|+|.|+|.-
T Consensus 5 pkPsLsa~P~~~--V~~G~~VTL~C~~---~~~~~~f~L~k~g~~~~~~~~-~~~~~~~~~~f~~~~~~~~~~G~Y~C~y 78 (99)
T d1nkra2 5 EKPSLSAQPGPT--VLAGENVTLSCSS---RSSYDMYHLSREGEAHERRLP-AGPKVNGTFQADFPLGPATHGGTYRCFG 78 (99)
T ss_dssp CCCEEEEESCSE--ECTTCEEEEEEEE---SSCCSEEEEEETTCSSCEEEE-CEEEETTEEEEEEEEEECCSCEEEEEEE
T ss_pred CCCEEEEeCCCc--ccCCCeEEEEECC---CCCccEEEEEECCCccccEEE-ccccCCccEEEEEeccccccCEEEEEEe
Confidence 578888888765 8999999999997 457789999999964322111 1133455566778888889999999986
Q ss_pred Ec
Q psy2166 770 TN 771 (805)
Q Consensus 770 ~N 771 (805)
..
T Consensus 79 ~~ 80 (99)
T d1nkra2 79 SF 80 (99)
T ss_dssp EE
T ss_pred ec
Confidence 53
|
| >d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]
Probab=97.97 E-value=1.4e-05 Score=62.84 Aligned_cols=82 Identities=16% Similarity=0.130 Sum_probs=49.2
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCe--EEEee-CcEEEEEEcCCCCCCCEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI--RTVHA-FGMVVLEILGTKIEDTGVYT 766 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~--~~~~~-~~~~~L~i~~v~~~d~G~Y~ 766 (805)
.+|.+...+.. ....|+..+|.|.+.++..+...|+|++||..+..+... ..... +....+....+..++...|+
T Consensus 3 V~P~V~l~~~~--~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~yt 80 (98)
T d1d5mb1 3 VYPEVTVYPAK--TQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYT 80 (98)
T ss_dssp BCCEEEEEEC----------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEE
T ss_pred CCCEEEEECCC--ccccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEE
Confidence 35666654433 244577789999999655555799999999988654211 11222 33344444456677888999
Q ss_pred EEEEcCC
Q psy2166 767 CRATNKW 773 (805)
Q Consensus 767 C~a~N~~ 773 (805)
|+|....
T Consensus 81 C~V~H~s 87 (98)
T d1d5mb1 81 CQVEHPS 87 (98)
T ss_dssp EEEECTT
T ss_pred EEEEECC
Confidence 9998753
|
| >d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.97 E-value=3.9e-07 Score=71.91 Aligned_cols=71 Identities=17% Similarity=0.297 Sum_probs=50.8
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------------CCCCceEEEe--cCcEEEEEEcccccCCCeE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------------ELGSRFKTTA--DFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------------~~~~~~~~~~--~~~~~~L~I~~~~~~D~G~ 138 (805)
.+.|.+|++|+|+|..+ .....+.||| .|+.+ ...+|+.+.. ....++|+|.+++.+|+|.
T Consensus 2 slsV~eG~~vtL~C~~~---~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~ 78 (96)
T d1ymmd1 2 ALSIQEGENATMNCSYK---TSINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTAS 78 (96)
T ss_dssp CCCCSSCCCCCBCCBCS---SCEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSC
T ss_pred CceECCCCCEEEEEEEe---CCcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEE
Confidence 35789999999999876 3345799998 23222 1223554443 2345689999999999999
Q ss_pred EEEEEEeCCe
Q psy2166 139 YTCRAWNLAG 148 (805)
Q Consensus 139 Y~C~a~n~~g 148 (805)
|.|.+....|
T Consensus 79 YyCA~~~~~g 88 (96)
T d1ymmd1 79 YFCATDTTSG 88 (96)
T ss_dssp CEEEEEETTS
T ss_pred EeEeEecCCC
Confidence 9999876544
|
| >d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin light chain kappa variable domain, VL-kappa species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]
Probab=97.96 E-value=1.6e-05 Score=64.59 Aligned_cols=72 Identities=19% Similarity=0.210 Sum_probs=52.1
Q ss_pred CCcccccCCCCeEEEEEEEeecCC-----CCeEEEEEEC--C------------EEccCCCCeEEEeeCcEEEEEEcCCC
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGD-----QTMTVEFLYN--G------------KPIEASHRIRTVHAFGMVVLEILGTK 758 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~-----p~~~v~W~~~--g------------~~l~~~~~~~~~~~~~~~~L~i~~v~ 758 (805)
|..+ .+.+|++|+|.|... +. ....+.||+- | ....-.+++....++....|+|.++.
T Consensus 9 P~s~-~~~~G~svtl~C~~s--~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~ 85 (113)
T d1n4xl_ 9 PLYL-PVSLGDQASISCRSS--QTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVE 85 (113)
T ss_dssp CSEE-EECTTCCEEEEEEES--SCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCC
T ss_pred CCEE-EECCCCCEEEEEEec--cccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCC
Confidence 4455 899999999999985 32 2257999981 1 11112355665666777899999999
Q ss_pred CCCCEEEEEEEEcC
Q psy2166 759 IEDTGVYTCRATNK 772 (805)
Q Consensus 759 ~~d~G~Y~C~a~N~ 772 (805)
.+|+|.|.|.+.+.
T Consensus 86 ~~DsavYyCa~~~~ 99 (113)
T d1n4xl_ 86 AEDLGIYYCFQGSH 99 (113)
T ss_dssp GGGCEEEEEEECSS
T ss_pred cccCEEEEEEECCC
Confidence 99999999976543
|
| >d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=97.96 E-value=1.6e-05 Score=62.44 Aligned_cols=78 Identities=13% Similarity=0.195 Sum_probs=51.3
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCe-E-EEeeCc----EEEEEEcCCCCCCCE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI-R-TVHAFG----MVVLEILGTKIEDTG 763 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~-~-~~~~~~----~~~L~i~~v~~~d~G 763 (805)
.+|.+...+.. .+..|+..+|.|.+.++-.+...|+|.+||+.+..+... . ..+.++ .+.|.+.. .+..
T Consensus 4 ~~P~V~v~~~~--~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~---~~~~ 78 (99)
T d1uvqa1 4 EVPEVTVFSKS--PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLP---SADE 78 (99)
T ss_dssp CCCEEEEEESS--CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECC---CTTC
T ss_pred cCCEEEEEcCC--cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcC---CCCC
Confidence 57777765433 356788999999999655566899999999988653111 1 122222 23466544 4455
Q ss_pred EEEEEEEcC
Q psy2166 764 VYTCRATNK 772 (805)
Q Consensus 764 ~Y~C~a~N~ 772 (805)
.|+|+|...
T Consensus 79 ~ytC~V~H~ 87 (99)
T d1uvqa1 79 IYDCKVEHW 87 (99)
T ss_dssp CEEEEEECT
T ss_pred EEEEEEEeC
Confidence 799999875
|
| >d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: B and T lymphocyte attenuator, Btla species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.96 E-value=9.2e-05 Score=53.05 Aligned_cols=83 Identities=22% Similarity=0.314 Sum_probs=58.2
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE-CC---EecCCCCceEEE-ec---CcEEEEEEcccccCCCeEEEEEEEeC
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF-NG---KPLELGSRFKTT-AD---FGFVTLDLTEVYDRDQGIYTCRAWNL 146 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k-~g---~~i~~~~~~~~~-~~---~~~~~L~I~~~~~~D~G~Y~C~a~n~ 146 (805)
...+..|+.+.|.|.+..- .-.|.|+|-| +| .++..+.....+ .+ -..+.|.+..+-.+|.|.|+|.|...
T Consensus 12 ~hs~~~G~~f~leCPVkYC-~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~ 90 (104)
T d1xaua_ 12 KHSAWTGELFKIECPVKYC-VHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFN 90 (104)
T ss_dssp EEEECTTSCEEEEEEEECS-SSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEET
T ss_pred eeeEecCCceEecCcchhh-cCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCC
Confidence 5688999999999999843 4577999998 44 344433332222 21 24668999999999999999999877
Q ss_pred CeeEEE-EEEEEE
Q psy2166 147 AGETFT-STTIYC 158 (805)
Q Consensus 147 ~g~~~~-~~~l~V 158 (805)
.+-.++ +.++.|
T Consensus 91 s~vieSHSvti~V 103 (104)
T d1xaua_ 91 SQVINSHSVTIHV 103 (104)
T ss_dssp TEEEECCCEEEEE
T ss_pred hhheecceEEEEe
Confidence 665433 444444
|
| >d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.96 E-value=1.4e-05 Score=65.09 Aligned_cols=72 Identities=13% Similarity=0.172 Sum_probs=49.4
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEE--CCEecC---------------CCCceEEE-ecCcEEEEEEccccc
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPLE---------------LGSRFKTT-ADFGFVTLDLTEVYD 133 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i~---------------~~~~~~~~-~~~~~~~L~I~~~~~ 133 (805)
.|..+.+.+|++|+|.|... .....+.||| .|+.+. ...++... .++..+.|+|.+++.
T Consensus 6 sP~~~~~~~G~~v~l~C~~~---~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 82 (113)
T d1j8he1 6 SSRYLVKRTGEKVFLECVQD---MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAST 82 (113)
T ss_dssp SCSEEEEETTCCEEECEEES---SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCG
T ss_pred cCCEEEECCCCCEEEEEEEc---CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCcc
Confidence 34456788999999999875 2345789998 232110 11233333 334566899999999
Q ss_pred CCCeEEEEEEEeC
Q psy2166 134 RDQGIYTCRAWNL 146 (805)
Q Consensus 134 ~D~G~Y~C~a~n~ 146 (805)
+|+|.|.|.+...
T Consensus 83 ~Dsa~YyCa~~~~ 95 (113)
T d1j8he1 83 NQTSMYLCASSST 95 (113)
T ss_dssp GGCEEEEEEEECT
T ss_pred CCcccEEeeEccC
Confidence 9999999998753
|
| >d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.95 E-value=1.1e-05 Score=65.94 Aligned_cols=71 Identities=14% Similarity=0.220 Sum_probs=49.9
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec---------------CCCCceEEEe-cCcEEEEEEcccccC
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL---------------ELGSRFKTTA-DFGFVTLDLTEVYDR 134 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i---------------~~~~~~~~~~-~~~~~~L~I~~~~~~ 134 (805)
|..+.+.+|++|+|.|.... ....+.||| .|+.. ....++.... +...++|+|.+++.+
T Consensus 6 P~~~~~~~G~svtl~C~~~~---~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 82 (113)
T d2ntsp1 6 PRYLIKTRGQQVTLSCSPIS---GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELG 82 (113)
T ss_dssp CSEEEEETTCCEEEEEECST---TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGG
T ss_pred CCeEEECCCCCEEEEEEECC---CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcc
Confidence 33568899999999999762 335789998 33221 1122443333 345678999999999
Q ss_pred CCeEEEEEEEeC
Q psy2166 135 DQGIYTCRAWNL 146 (805)
Q Consensus 135 D~G~Y~C~a~n~ 146 (805)
|+|.|.|.+...
T Consensus 83 Dsa~YyCA~~~~ 94 (113)
T d2ntsp1 83 DSALYLCASSLA 94 (113)
T ss_dssp GCEEEEEEEESS
T ss_pred cceeeeeeeeCC
Confidence 999999988754
|
| >d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD80, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=4.3e-06 Score=67.50 Aligned_cols=71 Identities=13% Similarity=0.169 Sum_probs=50.1
Q ss_pred CceecCCCcEEEEEEEecCCC--CCceEEEEECCEecC------------CCCceEEEecCcEEEEEEcccccCCCeEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKND--PNLKIEWIFNGKPLE------------LGSRFKTTADFGFVTLDLTEVYDRDQGIYT 140 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~--p~~~v~W~k~g~~i~------------~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~ 140 (805)
.+....|+.++|+|....... ....+.|.+++..+. ...|.....+ +..+|.|.+++.+|+|.|.
T Consensus 3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~-g~~sL~I~~v~~~D~G~Y~ 81 (105)
T d1dr9a1 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDIT-NNLSIVILALRPSDEGTYE 81 (105)
T ss_dssp EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEEST-TTTEEEECSCCGGGCEEEE
T ss_pred EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccC-CcEEEEECcCChHHCeEEE
Confidence 357789999999998763211 224688988876542 1124444333 3458999999999999999
Q ss_pred EEEEeC
Q psy2166 141 CRAWNL 146 (805)
Q Consensus 141 C~a~n~ 146 (805)
|.+.+.
T Consensus 82 C~V~~~ 87 (105)
T d1dr9a1 82 CVVLKY 87 (105)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999765
|
| >d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=1.4e-05 Score=63.61 Aligned_cols=85 Identities=15% Similarity=0.182 Sum_probs=56.6
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc---eEEEeeCC---EEEEEEccCCCCCC
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR---YRTFHDFG---IVILDILYCYEENS 566 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~---~~~~~~~~---~~~L~i~~v~~~d~ 566 (805)
..+|.+.+.++....+ .++.++|.|.+.++-.....|+|++||+++..+.. .....++. .+.|.|..-.....
T Consensus 3 ~~~P~V~l~~ps~~~~-~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~ 81 (102)
T d1q0xl2 3 KSSPTVTLFPPSSEEL-STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERH 81 (102)
T ss_dssp CBCCEEEEECCCHHHH-TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTC
T ss_pred CCCCEEEEECCCHHHh-CCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCC
Confidence 3567777765554433 46679999999987666789999999998864321 11112233 33477765444556
Q ss_pred EEEEEEEEcCCc
Q psy2166 567 GVYECRATNKYG 578 (805)
Q Consensus 567 G~Y~C~a~n~~g 578 (805)
..|+|++.+...
T Consensus 82 ~~ytC~V~H~~~ 93 (102)
T d1q0xl2 82 SSYSCQVTHEGH 93 (102)
T ss_dssp CEEEEEEEETTE
T ss_pred CEEEEEEEECCc
Confidence 799999998654
|
| >d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Hemochromatosis protein Hfe, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=8.4e-06 Score=63.42 Aligned_cols=75 Identities=16% Similarity=0.352 Sum_probs=47.9
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCC--CeEEE-eeCc-E---EEEEEcCCCCCCC
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASH--RIRTV-HAFG-M---VVLEILGTKIEDT 762 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~--~~~~~-~~~~-~---~~L~i~~v~~~d~ 762 (805)
.||.+..... ..++.++|.|.+.++-.+...|+|++||+.+.... ..... ..++ . ..|.| ...|.
T Consensus 3 vpP~V~v~~~-----~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v---~~~~~ 74 (94)
T d1de4a1 3 VPPLVKVTHH-----VTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAV---PPGEE 74 (94)
T ss_dssp BCCEEEEEEE-----ECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEE---CTTCG
T ss_pred CCCEEEEEEc-----CCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEE---CCCCC
Confidence 4676665222 24677999999995444567999999999986432 12222 2222 2 33544 44566
Q ss_pred EEEEEEEEcC
Q psy2166 763 GVYTCRATNK 772 (805)
Q Consensus 763 G~Y~C~a~N~ 772 (805)
..|+|++.+.
T Consensus 75 ~~ytC~V~H~ 84 (94)
T d1de4a1 75 QRYTCQVEHP 84 (94)
T ss_dssp GGEEEEEECT
T ss_pred CEEEEEEEeC
Confidence 6899999886
|
| >d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.94 E-value=1.3e-05 Score=62.72 Aligned_cols=64 Identities=22% Similarity=0.328 Sum_probs=46.1
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEE--CC---EEc--------cCCCCeEEE--eeCcEEEEEEcCCCCCCCEEEEEEEEc
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLY--NG---KPI--------EASHRIRTV--HAFGMVVLEILGTKIEDTGVYTCRATN 771 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~--~g---~~l--------~~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a~N 771 (805)
|++|+|.|... ......+.||| .| +.| ....++... .......|+|.++..+|+|.|.|.+..
T Consensus 1 G~~vtl~C~~~--~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~ 78 (94)
T d2gj6d1 1 GAIASLNCTYS--DRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTT 78 (94)
T ss_dssp TSCEEEEEEEC--CTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred CccEEEEEEEc--cccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEec
Confidence 78999999987 66667899998 11 111 112344432 334467899999999999999999875
Q ss_pred C
Q psy2166 772 K 772 (805)
Q Consensus 772 ~ 772 (805)
.
T Consensus 79 ~ 79 (94)
T d2gj6d1 79 D 79 (94)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.93 E-value=8.3e-06 Score=66.46 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=49.1
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec----------------CCCCceEEEec-CcEEEEEEccccc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL----------------ELGSRFKTTAD-FGFVTLDLTEVYD 133 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i----------------~~~~~~~~~~~-~~~~~L~I~~~~~ 133 (805)
|..+.+.+|++++|.|... .....+.|||- ++.. ....++..... ...++|+|.+++.
T Consensus 6 P~~~~~~~G~svtl~C~~~---~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 82 (112)
T d1kgce1 6 PRYKVAKRGQDVALRCDPI---SGHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQ 82 (112)
T ss_dssp CSEEEEETTCCEEEEEECC---TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCG
T ss_pred CCeEEECCCCCEEEEEEEC---CCCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCc
Confidence 3356788999999999865 33457999982 2111 01234544433 3457899999999
Q ss_pred CCCeEEEEEEEe
Q psy2166 134 RDQGIYTCRAWN 145 (805)
Q Consensus 134 ~D~G~Y~C~a~n 145 (805)
+|+|.|.|.+..
T Consensus 83 ~Dsa~YyCa~~~ 94 (112)
T d1kgce1 83 EDSAVYLCASSL 94 (112)
T ss_dssp GGCEEEEEEEES
T ss_pred CCCEEEEEeeeC
Confidence 999999998864
|
| >d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.93 E-value=3e-05 Score=62.73 Aligned_cols=70 Identities=11% Similarity=0.068 Sum_probs=49.0
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEE--CCE-E---c------------cCCCCeEEEeeCcEEEEEEcCCCC
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY--NGK-P---I------------EASHRIRTVHAFGMVVLEILGTKI 759 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g~-~---l------------~~~~~~~~~~~~~~~~L~i~~v~~ 759 (805)
|... .+.+|++++|.|... + -...+.||| .|+ + + ..............+.|+|.++..
T Consensus 8 P~~~-~~~~G~~vtl~C~~s--~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 83 (110)
T d2aq2a1 8 PRNK-VAVTGEKVTLSCQQT--N-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATP 83 (110)
T ss_dssp CSEE-EECTTCCEEEEEEES--S-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCG
T ss_pred CCeE-EEcCCCCEEEEEEEC--C-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCH
Confidence 4444 789999999999986 3 345799998 121 0 0 011222233445678999999999
Q ss_pred CCCEEEEEEEEc
Q psy2166 760 EDTGVYTCRATN 771 (805)
Q Consensus 760 ~d~G~Y~C~a~N 771 (805)
+|+|.|.|.+..
T Consensus 84 ~Dsa~YyCa~~~ 95 (110)
T d2aq2a1 84 SQTSVYFCASGG 95 (110)
T ss_dssp GGCEEEEEEEEE
T ss_pred hhCEEEEEeeCC
Confidence 999999998765
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=5.4e-06 Score=67.62 Aligned_cols=83 Identities=17% Similarity=0.196 Sum_probs=49.2
Q ss_pred ccCCCCeEEEEEEEeecCC-CCe--EEEEEECCEE----------ccC--CCCe--EEEeeCcEEEEEEcCCCCCCCEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGD-QTM--TVEFLYNGKP----------IEA--SHRI--RTVHAFGMVVLEILGTKIEDTGVY 765 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~-p~~--~v~W~~~g~~----------l~~--~~~~--~~~~~~~~~~L~i~~v~~~d~G~Y 765 (805)
.+..|++|+|.|..+.... +.. .+.|.+++.. ... ..++ +.....+...|+|.+++.+|+|.|
T Consensus 5 ~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~Y 84 (110)
T d1ncna_ 5 QAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGLY 84 (110)
T ss_dssp EEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEEE
T ss_pred EEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEEE
Confidence 6788999999999862111 112 3445453321 100 0111 112223345799999999999999
Q ss_pred EEEEEcC--Ccc---EEEEEEEEEE
Q psy2166 766 TCRATNK--WGQ---AEISVNLECV 785 (805)
Q Consensus 766 ~C~a~N~--~G~---~~~~~~l~V~ 785 (805)
.|.+... .|. ....++|.|.
T Consensus 85 ~C~V~~~~~~~~~~~~~~~~~L~V~ 109 (110)
T d1ncna_ 85 QCIIHHKKPTGMIRIHQMNSELSVL 109 (110)
T ss_dssp EEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred EEEEEecCCCceEEEEcceEEEEEE
Confidence 9998633 343 2556666664
|
| >d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=2.8e-05 Score=60.70 Aligned_cols=80 Identities=11% Similarity=0.191 Sum_probs=53.0
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEee--CCEEEEEEccCCCCCCEEEEE
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD--FGIVILDILYCYEENSGVYEC 571 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C 571 (805)
.||.+.+... -..|+.++|.|.+.++-++...|+|++||..+..........+ +.........+...|...|+|
T Consensus 2 ~PP~V~v~~~----~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC 77 (94)
T d1t7va1 2 DPPSVVVTSH----QAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSC 77 (94)
T ss_dssp BCCEEEEEEE----ECTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEE
T ss_pred cCCEeEEecc----CCCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEE
Confidence 5677766322 2357899999999987667789999999998864432222222 223333344445566678999
Q ss_pred EEEcCC
Q psy2166 572 RATNKY 577 (805)
Q Consensus 572 ~a~n~~ 577 (805)
.+.+..
T Consensus 78 ~V~H~s 83 (94)
T d1t7va1 78 HVQHSS 83 (94)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 998764
|
| >d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.91 E-value=1.6e-05 Score=65.26 Aligned_cols=72 Identities=18% Similarity=0.261 Sum_probs=51.5
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEE--CCE---Ec-----------c---CCCCeEEEee-CcEEEEEEcCC
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLY--NGK---PI-----------E---ASHRIRTVHA-FGMVVLEILGT 757 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g~---~l-----------~---~~~~~~~~~~-~~~~~L~i~~v 757 (805)
|..+ .+.+|++|+|.|... +.-...+.||| .|+ .| . ...++.+... +..+.|+|.++
T Consensus 8 P~~~-~~~~G~~v~L~C~~~--~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~ 84 (118)
T d2ij0c1 8 PSMV-IVKSGTSVKIECRSL--DTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSA 84 (118)
T ss_dssp CSEE-EECTTCCEEEEEEEC--SSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSC
T ss_pred CCeE-EEcCCCCEEEEEEEc--CCcccEEEEEEEcccccceeeeeccccccceeccccccccceeecccccccccccccc
Confidence 3444 789999999999987 55567899998 221 11 0 1234554433 44678999999
Q ss_pred CCCCCEEEEEEEEcC
Q psy2166 758 KIEDTGVYTCRATNK 772 (805)
Q Consensus 758 ~~~d~G~Y~C~a~N~ 772 (805)
..+|+|.|.|.+.-.
T Consensus 85 ~~~Dsa~YyCa~~~~ 99 (118)
T d2ij0c1 85 HPEDSGFYVCSALAG 99 (118)
T ss_dssp CGGGCEEEEEEEECS
T ss_pred ccccCceEEEEEecC
Confidence 999999999998643
|
| >d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.90 E-value=3.4e-05 Score=62.02 Aligned_cols=71 Identities=30% Similarity=0.353 Sum_probs=51.2
Q ss_pred CceecCCCcEEEEEEEecC--CCCCceEEEEE--CCEecC----------------CCCceEEEecC--cEEEEEEcccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPK--NDPNLKIEWIF--NGKPLE----------------LGSRFKTTADF--GFVTLDLTEVY 132 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~--~~p~~~v~W~k--~g~~i~----------------~~~~~~~~~~~--~~~~L~I~~~~ 132 (805)
...|..|+.|+|.|.+.+. ......+.|+| .|+.+. ..+|+.+..+. ....|.|.+++
T Consensus 9 ~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~ 88 (120)
T d2agjh1 9 PTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLD 88 (120)
T ss_dssp CSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCC
T ss_pred CeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeee
Confidence 3467889999999998853 22335688997 232211 13578877653 56789999999
Q ss_pred cCCCeEEEEEEEe
Q psy2166 133 DRDQGIYTCRAWN 145 (805)
Q Consensus 133 ~~D~G~Y~C~a~n 145 (805)
.+|++.|.|....
T Consensus 89 ~eDsAvYyCAr~~ 101 (120)
T d2agjh1 89 PVDTATYYCARTS 101 (120)
T ss_dssp GGGCEEEEEEEEC
T ss_pred eccceEEeeEecC
Confidence 9999999997543
|
| >d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.89 E-value=8.7e-05 Score=60.96 Aligned_cols=67 Identities=18% Similarity=0.231 Sum_probs=48.8
Q ss_pred ccCCCCeEEEEEEEeecCCC--CeEEEEEEC--C---E-----------Ecc---CCCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQ--TMTVEFLYN--G---K-----------PIE---ASHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p--~~~v~W~~~--g---~-----------~l~---~~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
++.+|++++|+|.+. |.. ...+.||+- | + .-. ..+|+.+..+ ...+.|+|.+++.
T Consensus 12 t~~~g~t~~LsC~~s--g~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l~~ 89 (123)
T d1hxmb1 12 TKTLSKTARLECVVS--GITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEK 89 (123)
T ss_dssp EEETTCCEEEEEEEE--SSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCG
T ss_pred EeCCCCCEEEEEEEc--CCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccccccc
Confidence 778899999999998 542 357899981 1 1 111 1346766543 4578899999999
Q ss_pred CCCEEEEEEEEc
Q psy2166 760 EDTGVYTCRATN 771 (805)
Q Consensus 760 ~d~G~Y~C~a~N 771 (805)
+|+|.|.|.+..
T Consensus 90 ~Dsa~YyCA~~~ 101 (123)
T d1hxmb1 90 QDIATYYCALWE 101 (123)
T ss_dssp GGCEEEEEEEEE
T ss_pred ccCcEEEEeeeC
Confidence 999999998643
|
| >d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.89 E-value=1.7e-05 Score=65.09 Aligned_cols=73 Identities=12% Similarity=0.218 Sum_probs=50.4
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEe---c-------------CCCCceEEEec--CcEEEEEEcccc
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKP---L-------------ELGSRFKTTAD--FGFVTLDLTEVY 132 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~---i-------------~~~~~~~~~~~--~~~~~L~I~~~~ 132 (805)
+..+.+.+|++|+|.|.+.+.......+.||+- |+. | ...+|+.+..+ ...+.|+|.+++
T Consensus 8 ~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~ 87 (120)
T d1ypzf1 8 EISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLE 87 (120)
T ss_dssp CSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCC
T ss_pred CCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccc
Confidence 335677799999999998632112346899982 211 1 11236666553 457889999999
Q ss_pred cCCCeEEEEEEEe
Q psy2166 133 DRDQGIYTCRAWN 145 (805)
Q Consensus 133 ~~D~G~Y~C~a~n 145 (805)
.+|+|.|.|.+..
T Consensus 88 ~~Dsa~YyCA~~~ 100 (120)
T d1ypzf1 88 EEDEAIYYCSYGE 100 (120)
T ss_dssp GGGCSEEEEEECC
T ss_pred cccceeEEEEEcC
Confidence 9999999998754
|
| >d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.89 E-value=4.1e-05 Score=62.80 Aligned_cols=73 Identities=14% Similarity=0.191 Sum_probs=49.2
Q ss_pred CCCceecCCCcEEEEEEEecCCC-CCceEEEEEC--CEecC--------------CCCc-eEEEecCcEEEEEEcccccC
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKND-PNLKIEWIFN--GKPLE--------------LGSR-FKTTADFGFVTLDLTEVYDR 134 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~-p~~~v~W~k~--g~~i~--------------~~~~-~~~~~~~~~~~L~I~~~~~~ 134 (805)
|..+.+.+|+.|+|+|....... ....+.|+|. |+... .+.+ .....++..+.|.|.+++.+
T Consensus 6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~ 85 (117)
T d1dqta_ 6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV 85 (117)
T ss_dssp CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence 44678889999999999863222 2224789982 32110 1111 23344556789999999999
Q ss_pred CCeEEEEEEEe
Q psy2166 135 DQGIYTCRAWN 145 (805)
Q Consensus 135 D~G~Y~C~a~n 145 (805)
|+|.|.|.+..
T Consensus 86 Dsa~YyCa~~~ 96 (117)
T d1dqta_ 86 DTGLYLCKVEL 96 (117)
T ss_dssp GCEEEEEEEEE
T ss_pred cCEeEEEEEec
Confidence 99999998853
|
| >d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=97.89 E-value=2.1e-05 Score=61.61 Aligned_cols=82 Identities=18% Similarity=0.227 Sum_probs=49.9
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc---eEEEeeCCEEEEEEccCCCCCCEEEEE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR---YRTFHDFGIVILDILYCYEENSGVYEC 571 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~---~~~~~~~~~~~L~i~~v~~~d~G~Y~C 571 (805)
+|.+.+.++.. ...|+.++|.|.+.++-+....++|++||+++..+.. .....++.........+..++...|+|
T Consensus 2 ~P~V~v~p~~~--~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC 79 (97)
T d1uvqb1 2 EPTVTISPSRT--EALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTC 79 (97)
T ss_dssp CCEEEEEEC----------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEE
T ss_pred CCEEEEecCCc--ccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEE
Confidence 46666544333 3457788999999987677899999999998765421 111223334444444455677789999
Q ss_pred EEEcCCc
Q psy2166 572 RATNKYG 578 (805)
Q Consensus 572 ~a~n~~g 578 (805)
.+.+..-
T Consensus 80 ~V~H~sl 86 (97)
T d1uvqb1 80 HVEHPSL 86 (97)
T ss_dssp EEECTTC
T ss_pred EEEeCCC
Confidence 9988643
|
| >d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.89 E-value=4.7e-05 Score=60.27 Aligned_cols=72 Identities=21% Similarity=0.271 Sum_probs=53.9
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C----------CCCceEEEecC--cEEEEEEcccccC
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E----------LGSRFKTTADF--GFVTLDLTEVYDR 134 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~----------~~~~~~~~~~~--~~~~L~I~~~~~~ 134 (805)
...+..|+.++|.|.+++..-....+.|++ .|+.+ . ..+|+.+..|. ....|.|.+++.+
T Consensus 9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~e 88 (116)
T d7fabh1 9 PGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAA 88 (116)
T ss_dssp CSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred CceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccc
Confidence 346788999999999996545566789998 23221 1 13577887653 5778999999999
Q ss_pred CCeEEEEEEEeC
Q psy2166 135 DQGIYTCRAWNL 146 (805)
Q Consensus 135 D~G~Y~C~a~n~ 146 (805)
|++.|.|.....
T Consensus 89 DtAvYyCAr~~~ 100 (116)
T d7fabh1 89 DTAVYYCARNLI 100 (116)
T ss_dssp GCEEEEEEEECS
T ss_pred cceEEEeeeecC
Confidence 999999986544
|
| >d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.88 E-value=1.2e-05 Score=65.49 Aligned_cols=83 Identities=19% Similarity=0.318 Sum_probs=52.5
Q ss_pred CcccccCCCCeEEEEEEEeecCCCCeEEEEEEC--C-EE--cc-CC------CCeE---EEeeCcEEEEEEcCCCCCCCE
Q psy2166 699 QHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN--G-KP--IE-AS------HRIR---TVHAFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 699 ~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g-~~--l~-~~------~~~~---~~~~~~~~~L~i~~v~~~d~G 763 (805)
..+ .+.+|++++|.|... +. ...+.|||- | .+ |- .. .... .......+.|.|.+++.+|+|
T Consensus 9 ~~~-~v~~G~~vtl~C~~~--~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa 84 (113)
T d1h5ba_ 9 SAL-SLHEGTDSALRCNFT--TT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSG 84 (113)
T ss_dssp SEE-EEETTCCEEEEEEES--SC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCE
T ss_pred CEE-EEcCCCCEEEEEEEe--cC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCE
Confidence 344 789999999999986 43 347899981 1 11 10 00 1110 012234578999999999999
Q ss_pred EEEEEEEcCCccEE----EEEEEEEE
Q psy2166 764 VYTCRATNKWGQAE----ISVNLECV 785 (805)
Q Consensus 764 ~Y~C~a~N~~G~~~----~~~~l~V~ 785 (805)
.|.|.+....|... .-++|+|.
T Consensus 85 ~YyCa~~~~~~~~~~~FG~GT~L~V~ 110 (113)
T d1h5ba_ 85 TYFCAAEASSGSWQLIFGSGTQLTVM 110 (113)
T ss_dssp EEEEEEECSSSSSSCEECCCEEEEEE
T ss_pred EEEEEecCCCCCCeeEECcCEEEEEE
Confidence 99999876554322 12356664
|
| >d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD86 (b7-2), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=9.9e-06 Score=65.97 Aligned_cols=71 Identities=18% Similarity=0.230 Sum_probs=43.4
Q ss_pred ceecCCCcEEEEEEEecCC-CCCce--EEEEECCEec----------C--CCCceE--EEecCcEEEEEEcccccCCCeE
Q psy2166 76 FKLGEAQPLHLEAQVEPKN-DPNLK--IEWIFNGKPL----------E--LGSRFK--TTADFGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~-~p~~~--v~W~k~g~~i----------~--~~~~~~--~~~~~~~~~L~I~~~~~~D~G~ 138 (805)
+.+..|++|+|+|...... .+... +.|.+++..+ . ...+|. .....+..+|.|.+++.+|+|.
T Consensus 4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~ 83 (110)
T d1ncna_ 4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL 83 (110)
T ss_dssp EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence 4677899999999987322 22222 3444433211 0 111221 2222334589999999999999
Q ss_pred EEEEEEeC
Q psy2166 139 YTCRAWNL 146 (805)
Q Consensus 139 Y~C~a~n~ 146 (805)
|.|.+...
T Consensus 84 Y~C~V~~~ 91 (110)
T d1ncna_ 84 YQCIIHHK 91 (110)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEec
Confidence 99999643
|
| >d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=97.86 E-value=2.3e-05 Score=61.14 Aligned_cols=77 Identities=9% Similarity=0.021 Sum_probs=53.6
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceE-EEecCcEEEEEEcccccCCCeEEEEEE
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK-TTADFGFVTLDLTEVYDRDQGIYTCRA 143 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~-~~~~~~~~~L~I~~~~~~D~G~Y~C~a 143 (805)
+|.+...+. ..|..|++|+|.|... .....+.++|+|.......... ....+....+.|.+++.+|+|.|+|..
T Consensus 2 KPsLsa~P~--~~V~~G~~VTl~C~~~---~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y 76 (96)
T d1nkra1 2 KPSLLAHPG--PLVKSEETVILQCWSD---VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYG 76 (96)
T ss_dssp CCEEEEESC--SEEETTCCEEEEEEES---SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred CCEEEeeCC--CccCCCCcEEEEECCC---CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEE
Confidence 466666554 4889999999999976 5566899999885422111111 111123457999999999999999987
Q ss_pred EeC
Q psy2166 144 WNL 146 (805)
Q Consensus 144 ~n~ 146 (805)
...
T Consensus 77 ~~~ 79 (96)
T d1nkra1 77 SVT 79 (96)
T ss_dssp EBT
T ss_pred EcC
Confidence 644
|
| >d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=1.4e-05 Score=64.48 Aligned_cols=84 Identities=12% Similarity=0.149 Sum_probs=56.9
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEE---E----eeCC---EEEEEEccCCC
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT---F----HDFG---IVILDILYCYE 563 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~---~----~~~~---~~~L~i~~v~~ 563 (805)
.+|.+.+..+....+..|+.++|.|.+.++.+....|+|++||+.+..+..... . .++. .+.|.|..-..
T Consensus 3 ~~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w 82 (108)
T d1ow0a2 3 FRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDW 82 (108)
T ss_dssp CCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHH
T ss_pred CCCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHh
Confidence 577777765554447789999999999987566779999999999865422211 0 1222 33566664333
Q ss_pred CCCEEEEEEEEcCC
Q psy2166 564 ENSGVYECRATNKY 577 (805)
Q Consensus 564 ~d~G~Y~C~a~n~~ 577 (805)
.....|+|.+.+..
T Consensus 83 ~~g~~ytC~V~H~s 96 (108)
T d1ow0a2 83 KKGDTFSCMVGHEA 96 (108)
T ss_dssp HHTCCEEEEEECTT
T ss_pred CCCCEEEEEEEeCC
Confidence 34569999999864
|
| >d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.86 E-value=4e-05 Score=62.83 Aligned_cols=70 Identities=21% Similarity=0.328 Sum_probs=50.2
Q ss_pred CcccccCCCCeEEEEEEEeecCCC--CeEEEEEEC--CE------------EccCCCCeEEEee--CcEEEEEEcCCCCC
Q psy2166 699 QHLSNLSEGEIAHFEASLIPVGDQ--TMTVEFLYN--GK------------PIEASHRIRTVHA--FGMVVLEILGTKIE 760 (805)
Q Consensus 699 ~~~~~v~~G~~~~l~C~~~~~g~p--~~~v~W~~~--g~------------~l~~~~~~~~~~~--~~~~~L~i~~v~~~ 760 (805)
... .+.+|++++|.|.+. +.. ...+.||+- |+ .-...+++....+ .....|.|.+++.+
T Consensus 9 ~sv-~v~~G~~vtL~C~~s--~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~ 85 (120)
T d1hxma1 9 QTV-PVSIGVPATLRCSMK--GEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSER 85 (120)
T ss_dssp SEE-EEETTCCEEEEEEEC--SSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGG
T ss_pred CCE-EECCCCCEEEEEEEe--ccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccccc
Confidence 344 789999999999997 543 357999981 11 1111246655433 45789999999999
Q ss_pred CCEEEEEEEEc
Q psy2166 761 DTGVYTCRATN 771 (805)
Q Consensus 761 d~G~Y~C~a~N 771 (805)
|+|.|.|.+..
T Consensus 86 Dsa~YyCA~~~ 96 (120)
T d1hxma1 86 DEGSYYCACDT 96 (120)
T ss_dssp GCEEEEEEEEC
T ss_pred CCceeecCccc
Confidence 99999998754
|
| >d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=97.85 E-value=0.00011 Score=58.01 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=54.3
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEE-eeCC----EEEEEEccCCCCCCEE
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTF-HDFG----IVILDILYCYEENSGV 568 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~-~~~~----~~~L~i~~v~~~d~G~ 568 (805)
..|.+.+..... +..|+..+|.|.+.++-.+...|+|++||..+......... .+++ .+.|.|. .+|...
T Consensus 3 ~~P~v~v~~~~p--~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ 77 (103)
T d1hdma1 3 GFPIAEVFTLKP--LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFT---PEPSDI 77 (103)
T ss_dssp BCCEEEEEESSC--CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEEC---CCTTCC
T ss_pred CCCeEEEECCCc--hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEe---cCCCCE
Confidence 456665544333 45788999999999887778999999999987543332222 2233 2335554 455567
Q ss_pred EEEEEEcCCcc
Q psy2166 569 YECRATNKYGS 579 (805)
Q Consensus 569 Y~C~a~n~~g~ 579 (805)
|+|.+.+..-.
T Consensus 78 ytC~V~H~~l~ 88 (103)
T d1hdma1 78 FSCIVTHEPDR 88 (103)
T ss_dssp EEEEEEETTTT
T ss_pred EEEEEEeCCCC
Confidence 99999987443
|
| >d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=2.4e-05 Score=62.46 Aligned_cols=86 Identities=12% Similarity=0.076 Sum_probs=55.5
Q ss_pred CCCceEecCCCc-ccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCce-EEEeeCC----EEEEEEccCCCCCCE
Q psy2166 494 EAPKFITQISDV-TQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY-RTFHDFG----IVILDILYCYEENSG 567 (805)
Q Consensus 494 ~~P~~~~~~~~~-~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~-~~~~~~~----~~~L~i~~v~~~d~G 567 (805)
.||.+.+..+.. .....+.+++|.|.+.++-+....|+|++||+.+..+... .....++ .+.|.|..-......
T Consensus 3 ~pP~V~v~~~s~~~~~~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~ 82 (104)
T d1o0va1 3 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDR 82 (104)
T ss_dssp CCCEEEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTC
T ss_pred CCCEEEEECCCcccccCCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCC
Confidence 567766543322 1135667899999999876667799999999998644221 1222333 235777653333466
Q ss_pred EEEEEEEcCCcc
Q psy2166 568 VYECRATNKYGS 579 (805)
Q Consensus 568 ~Y~C~a~n~~g~ 579 (805)
.|+|.+.+....
T Consensus 83 ~ytC~V~H~~~t 94 (104)
T d1o0va1 83 TYTCQVTYQGHT 94 (104)
T ss_dssp CEEEEEEETTEE
T ss_pred EEEEEEEECCEe
Confidence 799999997543
|
| >d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.85 E-value=1.1e-05 Score=65.76 Aligned_cols=71 Identities=18% Similarity=0.202 Sum_probs=49.4
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec---------------CCCCceEEEe-cCcEEEEEEcccccC
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL---------------ELGSRFKTTA-DFGFVTLDLTEVYDR 134 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i---------------~~~~~~~~~~-~~~~~~L~I~~~~~~ 134 (805)
|..+.+.+|+.++|.|... .....+.|||- |+.+ ....++.... .+..+.|+|.+++.+
T Consensus 8 P~~~~~~~G~~v~l~C~~~---~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 84 (113)
T d1nfdb1 8 PRHIIKEKGGRSVLTCIPI---SGHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELE 84 (113)
T ss_dssp CSEEEEETTCCCEEEEECC---TTCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGG
T ss_pred CCEEEEeCCCCEEEEEEeC---CCCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcC
Confidence 4356889999999999865 22347999982 2111 0123444432 334568999999999
Q ss_pred CCeEEEEEEEeC
Q psy2166 135 DQGIYTCRAWNL 146 (805)
Q Consensus 135 D~G~Y~C~a~n~ 146 (805)
|+|.|.|.+...
T Consensus 85 Dsa~YyCa~~~~ 96 (113)
T d1nfdb1 85 DSAMYFCASSLR 96 (113)
T ss_dssp GCEEECEEEESS
T ss_pred CceeEEEEeecC
Confidence 999999988654
|
| >d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.85 E-value=4.2e-05 Score=60.95 Aligned_cols=70 Identities=16% Similarity=0.273 Sum_probs=52.4
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec------C----------CCCceEEEecC--cEEEEEEcccccCC
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL------E----------LGSRFKTTADF--GFVTLDLTEVYDRD 135 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i------~----------~~~~~~~~~~~--~~~~L~I~~~~~~D 135 (805)
-.|..|++++|.|.+++.......+.|+|- |+.+ . ..+|+.++.|. ....|.|.+++.+|
T Consensus 9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eD 88 (119)
T d1kxvc_ 9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDD 88 (119)
T ss_dssp EEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGG
T ss_pred ceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCC
Confidence 467899999999999965444567889882 2211 1 12478888763 56789999999999
Q ss_pred CeEEEEEEEe
Q psy2166 136 QGIYTCRAWN 145 (805)
Q Consensus 136 ~G~Y~C~a~n 145 (805)
++.|.|....
T Consensus 89 tA~YYCAr~~ 98 (119)
T d1kxvc_ 89 TAMYYCKPSL 98 (119)
T ss_dssp CEEEEEEEEE
T ss_pred cceEeeeecc
Confidence 9999997654
|
| >d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.84 E-value=1.4e-05 Score=65.37 Aligned_cols=72 Identities=14% Similarity=0.202 Sum_probs=49.1
Q ss_pred CCCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec---------------CCCCceEEEe-cCcEEEEEEccccc
Q psy2166 72 LKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL---------------ELGSRFKTTA-DFGFVTLDLTEVYD 133 (805)
Q Consensus 72 ~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i---------------~~~~~~~~~~-~~~~~~L~I~~~~~ 133 (805)
.|..+.+.+|++|+|.|..+ .....+.||+- |+.+ ....++.... .+..++|.|.+++.
T Consensus 5 sP~~~~~~~G~svtl~C~~s---~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 81 (114)
T d1ogae1 5 SPKYLFRKEGQNVTLSCEQN---LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQK 81 (114)
T ss_dssp SCSEEEEETTCCEEECCEEC---SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCS
T ss_pred cCCeEEEcCCCCEEEEEEEe---cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCc
Confidence 34457889999999999986 33457999982 2111 0111232222 23456899999999
Q ss_pred CCCeEEEEEEEeC
Q psy2166 134 RDQGIYTCRAWNL 146 (805)
Q Consensus 134 ~D~G~Y~C~a~n~ 146 (805)
+|+|.|.|.+...
T Consensus 82 ~DSa~YyCa~~~~ 94 (114)
T d1ogae1 82 NPTAFYLCASSSR 94 (114)
T ss_dssp CCCEEEEEEEESS
T ss_pred CCceeEEEeeccC
Confidence 9999999987654
|
| >d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Fc (IgG) receptor, alpha-3 domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.83 E-value=2.6e-05 Score=60.24 Aligned_cols=77 Identities=14% Similarity=0.215 Sum_probs=50.9
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEee-CC---EEEEEEccCCCCCCEEE
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHD-FG---IVILDILYCYEENSGVY 569 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-~~---~~~L~i~~v~~~d~G~Y 569 (805)
.||.+.+.... ..+..++|.|.+.++-++...|+|++||..+..+........ +. .+.|.+. .+|...|
T Consensus 2 ~PP~V~v~~~~----~~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~---~~~~~~y 74 (91)
T d3frua1 2 EPPSMRLKARP----GNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVK---RGDEHHY 74 (91)
T ss_dssp BCCEEEEEEEE----CSTTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEE---TTCGGGE
T ss_pred CCCEEEEEecC----CCCCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEEC---CCCCCEE
Confidence 46777663221 234589999999987777899999999998865422222222 22 2345554 4566789
Q ss_pred EEEEEcCC
Q psy2166 570 ECRATNKY 577 (805)
Q Consensus 570 ~C~a~n~~ 577 (805)
+|++.+..
T Consensus 75 tC~V~H~s 82 (91)
T d3frua1 75 QCQVEHEG 82 (91)
T ss_dssp EEEEECTT
T ss_pred EEEEEeCC
Confidence 99998764
|
| >d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.83 E-value=2e-05 Score=63.34 Aligned_cols=85 Identities=11% Similarity=0.109 Sum_probs=58.3
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceE--EEeeCCE---EEEEEccCCCCCCE
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR--TFHDFGI---VILDILYCYEENSG 567 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~--~~~~~~~---~~L~i~~v~~~d~G 567 (805)
..+|++.+.++....+..+..++|.|.+.++-.....|+|++||..+..+.... ...++.. +.|.|. .+|-|
T Consensus 6 ~~~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~---~~~w~ 82 (107)
T d1hxmb2 6 DVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVP---EKSLD 82 (107)
T ss_dssp CCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEEC---TGGGG
T ss_pred CCCCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEe---cccCC
Confidence 467787777666665778899999999998877788999999998775432111 1223333 345554 34423
Q ss_pred -EEEEEEEcCCcce
Q psy2166 568 -VYECRATNKYGSD 580 (805)
Q Consensus 568 -~Y~C~a~n~~g~~ 580 (805)
.|+|.+.+.....
T Consensus 83 ~~ytC~V~H~s~~~ 96 (107)
T d1hxmb2 83 KEHRCIVRHENNKN 96 (107)
T ss_dssp SCEEEEEEETTSGG
T ss_pred CeEEEEEEECCCCC
Confidence 7999999865543
|
| >d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]
Probab=97.82 E-value=1.2e-05 Score=65.13 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=47.6
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEE--CCE---Ecc---------CCCCeEEEee--CcEEEEEEcCCCCCCCEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLY--NGK---PIE---------ASHRIRTVHA--FGMVVLEILGTKIEDTGVYT 766 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g~---~l~---------~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~ 766 (805)
.+.+|++++|.|... ..-...+.||| .|+ .|- ...++....+ +..+.|.|.++..+|+|.|.
T Consensus 11 ~~~~G~~vtl~C~~~--~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~Yy 88 (110)
T d1ac6a_ 11 ALSEEDFLTIHCNYS--ASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYY 88 (110)
T ss_dssp EEETTEEEEECEEEE--CSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEEEE
T ss_pred EECCCCCEEEEEEec--CCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCcccc
Confidence 799999999999987 44445799998 121 111 1123333222 33578999999999999999
Q ss_pred EEEEcC
Q psy2166 767 CRATNK 772 (805)
Q Consensus 767 C~a~N~ 772 (805)
|.+...
T Consensus 89 CA~~~~ 94 (110)
T d1ac6a_ 89 CALSGG 94 (110)
T ss_dssp EEEEET
T ss_pred eeecCC
Confidence 988754
|
| >d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=6.8e-06 Score=64.42 Aligned_cols=77 Identities=13% Similarity=0.114 Sum_probs=52.8
Q ss_pred cCCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEEEecCcEEEEEEcccccCCCeEEEEE
Q psy2166 63 FAKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKTTADFGFVTLDLTEVYDRDQGIYTCR 142 (805)
Q Consensus 63 ~~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~ 142 (805)
.++|.+...+. ..|..|++|+|.|... .+...+.++|+|.......+... ..+....+.|.+++.+|+|.|+|.
T Consensus 2 LPkP~Lsa~Ps--~~V~~G~~VTL~C~~~---~~~~~f~L~keg~~~~~~~~~~~-~~~~~a~F~i~~v~~~~~G~Y~C~ 75 (96)
T d1ugna1 2 LPKPTLWAEPG--SVITQGSPVTLRCQGG---QETQEYRLYREKKTAPWITRIPQ-ELVKKGQFPIPSITWEHTGRYRCY 75 (96)
T ss_dssp CCCCEEEEESC--SEEETTCCEEEEEECC---TTCCCEEEEESSSCCHHHHTSCH-HHHTTTEEEESSCCGGGCEEEEEE
T ss_pred CCCCEEEeECC--CccCCCCcEEEEEeCC---CCCCEEEEEECCCCcccEEEccC-CCCCEEEEEEEecCHHHCCeEEEE
Confidence 35677776664 4789999999999975 55668999998854221000000 011223789999999999999998
Q ss_pred EEe
Q psy2166 143 AWN 145 (805)
Q Consensus 143 a~n 145 (805)
...
T Consensus 76 y~~ 78 (96)
T d1ugna1 76 YGS 78 (96)
T ss_dssp EEE
T ss_pred EeC
Confidence 754
|
| >d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=1.7e-05 Score=63.48 Aligned_cols=85 Identities=19% Similarity=0.281 Sum_probs=55.6
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCce----EEEeeCC---EEEEEEccCCCCCC
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRY----RTFHDFG---IVILDILYCYEENS 566 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~----~~~~~~~---~~~L~i~~v~~~d~ 566 (805)
.+|.+.+.++... ...++.++|.|.+.++......|+|++||+.+..+... ....++. .+.|.|..-.....
T Consensus 3 ~~P~V~v~~p~~~-~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g 81 (105)
T d1fp5a2 3 AAPEVYAFATPEW-PGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQK 81 (105)
T ss_dssp BCCEEEEEECCCC-SSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTG
T ss_pred CCCEEEEECCChH-HhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCC
Confidence 4566655444332 44677899999999865667999999999988643211 1112222 33577765444455
Q ss_pred EEEEEEEEcCCcc
Q psy2166 567 GVYECRATNKYGS 579 (805)
Q Consensus 567 G~Y~C~a~n~~g~ 579 (805)
..|+|.+.+....
T Consensus 82 ~~ytC~V~H~~l~ 94 (105)
T d1fp5a2 82 DEFICRAVHEAAS 94 (105)
T ss_dssp GGEEEEEECTTST
T ss_pred CEEEEEEEECCCC
Confidence 6899999986553
|
| >d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: TREM-1 (triggering receptor expressed on myeloid cells 1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.80 E-value=2.4e-05 Score=62.64 Aligned_cols=71 Identities=15% Similarity=0.248 Sum_probs=50.4
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC--CE----EccC-----------CCCeEEEee--CcEEEEEEcCCCCCCCE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--GK----PIEA-----------SHRIRTVHA--FGMVVLEILGTKIEDTG 763 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g~----~l~~-----------~~~~~~~~~--~~~~~L~i~~v~~~d~G 763 (805)
.+.+|++++|.|.+.+.....-.+.|+|. |+ .+.. .+|+.+..+ .+.++|+|.+++.+|+|
T Consensus 6 ~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eDsa 85 (110)
T d1u9ka_ 6 DLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTDSG 85 (110)
T ss_dssp EECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGGCE
T ss_pred cCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCCCE
Confidence 78999999999998622234457889982 22 1111 135555543 56789999999999999
Q ss_pred EEEEEEEcCC
Q psy2166 764 VYTCRATNKW 773 (805)
Q Consensus 764 ~Y~C~a~N~~ 773 (805)
.|.|...+.-
T Consensus 86 ~YyCa~~~~~ 95 (110)
T d1u9ka_ 86 LYRCVIYHPP 95 (110)
T ss_dssp EEEEEEECTT
T ss_pred EEEEEEeCCC
Confidence 9999875443
|
| >d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=6.2e-05 Score=53.58 Aligned_cols=59 Identities=14% Similarity=0.132 Sum_probs=42.7
Q ss_pred CCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEEE
Q psy2166 705 SEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRAT 770 (805)
Q Consensus 705 ~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 770 (805)
..|..+.|.|.......+.---+|.|+|+.|..+.. .+....++|.. .+|+|.|.|+--
T Consensus 10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~-----~~~~tey~V~~--~D~SGeY~CVFl 68 (80)
T d3b5ha2 10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL-----PGQKTEFKVDS--DDQWGEYSCVFL 68 (80)
T ss_dssp EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTC-----CCSEEEEEECG--GGCCEEEEEEEE
T ss_pred cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCC-----CCCceEEEEec--CCCCceEEEEEc
Confidence 458889999999833334456789999999986532 12333577764 889999999953
|
| >d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=2.1e-05 Score=62.56 Aligned_cols=85 Identities=13% Similarity=0.147 Sum_probs=55.4
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc---eEEEeeCC---EEEEEEccCCCCCC
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR---YRTFHDFG---IVILDILYCYEENS 566 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~---~~~~~~~~---~~~L~i~~v~~~d~ 566 (805)
..+|.+.+.++....+ .++.++|.|.+.++......|+|++||+.+..+.. .....++. .+.|.|........
T Consensus 3 ~~~P~V~~~~ps~~~~-~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~ 81 (102)
T d1rzfl2 3 KAAPSVTLFPPSSEEL-QANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSH 81 (102)
T ss_dssp CBCCEEEEECCCHHHH-HTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHS
T ss_pred CCCCEEEEECCCHHHh-cCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCC
Confidence 4578877765554423 46779999999987677889999999999865421 11112233 33466654332334
Q ss_pred EEEEEEEEcCCc
Q psy2166 567 GVYECRATNKYG 578 (805)
Q Consensus 567 G~Y~C~a~n~~g 578 (805)
..|+|.+.+...
T Consensus 82 ~~ytC~V~H~~~ 93 (102)
T d1rzfl2 82 RSYSCQVTHEGS 93 (102)
T ss_dssp SCEEEEEEETTE
T ss_pred CEEEEEEEECCc
Confidence 579999998743
|
| >d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.80 E-value=1.8e-05 Score=64.39 Aligned_cols=70 Identities=14% Similarity=0.199 Sum_probs=47.7
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEE--CCEecC---------------CCCceEEE-ecCcEEEEEEcccccC
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPLE---------------LGSRFKTT-ADFGFVTLDLTEVYDR 134 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i~---------------~~~~~~~~-~~~~~~~L~I~~~~~~ 134 (805)
|....+.+|++++|.|..+ .....+.||+ .|+.+. ...++... .......|.|.+++.+
T Consensus 6 P~~~~~~~G~svtl~C~~s---~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~ 82 (112)
T d2bnub1 6 PKFQVLKTGQSMTLQCAQD---MNHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPS 82 (112)
T ss_dssp CSEEEEETTCCEEEEEEES---SCCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGG
T ss_pred CCeEEECCCCCEEEEEEEE---CCccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHH
Confidence 3356789999999999986 2345799998 232110 11222222 2334568999999999
Q ss_pred CCeEEEEEEEe
Q psy2166 135 DQGIYTCRAWN 145 (805)
Q Consensus 135 D~G~Y~C~a~n 145 (805)
|+|.|.|.+..
T Consensus 83 DsavYyCA~~~ 93 (112)
T d2bnub1 83 QTSVYFCASSY 93 (112)
T ss_dssp GCEEEEEEEEC
T ss_pred HCEEEEEeecC
Confidence 99999998764
|
| >d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=3.7e-05 Score=59.98 Aligned_cols=79 Identities=18% Similarity=0.273 Sum_probs=49.3
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEee-Cc-EEEEEEcCCCCCCCEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA-FG-MVVLEILGTKIEDTGVYTC 767 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-~~-~~~L~i~~v~~~d~G~Y~C 767 (805)
.||.+..... -..|+.++|.|.+.++-.+...|+|.+||+.+..........+ ++ ........+...|...|+|
T Consensus 2 ~PP~V~v~~~----~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC 77 (94)
T d1t7va1 2 DPPSVVVTSH----QAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSC 77 (94)
T ss_dssp BCCEEEEEEE----ECTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEE
T ss_pred cCCEeEEecc----CCCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEE
Confidence 4666665332 2357899999999955445579999999998865433322222 22 2222223334455668999
Q ss_pred EEEcC
Q psy2166 768 RATNK 772 (805)
Q Consensus 768 ~a~N~ 772 (805)
++...
T Consensus 78 ~V~H~ 82 (94)
T d1t7va1 78 HVQHS 82 (94)
T ss_dssp EEEET
T ss_pred EEEEC
Confidence 99775
|
| >d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=3.3e-05 Score=60.62 Aligned_cols=78 Identities=8% Similarity=0.048 Sum_probs=52.0
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCC--eEEEeeCcEEEEEEcCCCCCCCEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHR--IRTVHAFGMVVLEILGTKIEDTGVYTC 767 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C 767 (805)
.+|.|...|..+ |..|++|+|.|... .....+..+|+|........ ......+....+.|.+++.+|+|.|+|
T Consensus 3 pkPsLsa~P~~~--v~~G~~VTL~C~~~---~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C 77 (98)
T d1ugna2 3 IKPTLSAQPSPV--VNSGGNVTLQCDSQ---VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRC 77 (98)
T ss_dssp CCCEEEEESCSE--EETTCCEEEEEECS---SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEE
T ss_pred CCCEEEeeCCCc--cCCCCcEEEEeCCC---CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEE
Confidence 468888888664 99999999999963 45668888998874332211 011123345679999999999999999
Q ss_pred EEEcC
Q psy2166 768 RATNK 772 (805)
Q Consensus 768 ~a~N~ 772 (805)
.-...
T Consensus 78 ~y~~~ 82 (98)
T d1ugna2 78 YAYDS 82 (98)
T ss_dssp EEECT
T ss_pred eeEcC
Confidence 86543
|
| >d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Killer cell inhibitory receptor species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]
Probab=97.79 E-value=2.6e-05 Score=60.81 Aligned_cols=77 Identities=12% Similarity=0.052 Sum_probs=53.4
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEee-CcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHA-FGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
+|.|...|.. .|..|++|+|.|... .....+.++|+|..-........... .....+.|.+++.+|+|.|+|.-
T Consensus 2 KPsLsa~P~~--~V~~G~~VTl~C~~~---~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y 76 (96)
T d1nkra1 2 KPSLLAHPGP--LVKSEETVILQCWSD---VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYG 76 (96)
T ss_dssp CCEEEEESCS--EEETTCCEEEEEEES---SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred CCEEEeeCCC--ccCCCCcEEEEECCC---CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEE
Confidence 5777777765 499999999999974 56678999998742211100001111 22457999999999999999986
Q ss_pred EcC
Q psy2166 770 TNK 772 (805)
Q Consensus 770 ~N~ 772 (805)
...
T Consensus 77 ~~~ 79 (96)
T d1nkra1 77 SVT 79 (96)
T ss_dssp EBT
T ss_pred EcC
Confidence 543
|
| >d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.78 E-value=5.8e-05 Score=60.40 Aligned_cols=71 Identities=14% Similarity=0.268 Sum_probs=52.1
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-----------CCCceEEEec--CcEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-----------LGSRFKTTAD--FGFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-----------~~~~~~~~~~--~~~~~L~I~~~~~ 133 (805)
...+..|+.++|.|.+++..-....+.|++ .|+.+ . ..+|+.++.| .+...|.|.+++.
T Consensus 9 ~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~ 88 (120)
T d1pg7x1 9 PELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTS 88 (120)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCC
Confidence 346789999999999985433455688987 23221 1 1247877765 3577899999999
Q ss_pred CCCeEEEEEEEe
Q psy2166 134 RDQGIYTCRAWN 145 (805)
Q Consensus 134 ~D~G~Y~C~a~n 145 (805)
+|++.|.|....
T Consensus 89 eDtA~YYCAr~~ 100 (120)
T d1pg7x1 89 NDSAVYYCARED 100 (120)
T ss_dssp GGCEEEEEEEEC
T ss_pred CcceEEEeeecC
Confidence 999999998653
|
| >d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.78 E-value=5.7e-05 Score=60.18 Aligned_cols=68 Identities=28% Similarity=0.367 Sum_probs=51.1
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C----------CCCceEEEecC--cEEEEEEcccccCC
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E----------LGSRFKTTADF--GFVTLDLTEVYDRD 135 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~----------~~~~~~~~~~~--~~~~L~I~~~~~~D 135 (805)
-.|..|++++|.|.+++..-....+.|++ .|+.+ . ..+|+.++.|. ....|.|.+++.+|
T Consensus 10 ~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eD 89 (120)
T d1dn0b1 10 GLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAAD 89 (120)
T ss_dssp CEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred cEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccccccc
Confidence 46789999999999996544456788998 23221 1 13588888753 56789999999999
Q ss_pred CeEEEEEE
Q psy2166 136 QGIYTCRA 143 (805)
Q Consensus 136 ~G~Y~C~a 143 (805)
++.|.|..
T Consensus 90 tA~YYCAr 97 (120)
T d1dn0b1 90 TAVYYCAR 97 (120)
T ss_dssp CEEEEEEE
T ss_pred ccEEEEEe
Confidence 99999943
|
| >d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.78 E-value=1.6e-05 Score=64.65 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=48.1
Q ss_pred ccCCCCeEEEEEEEeecCCC-CeEEEEEEC--CEEcc------------CCCCeEEEeeCcEEEEEEcCCCCCCCEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQ-TMTVEFLYN--GKPIE------------ASHRIRTVHAFGMVVLEILGTKIEDTGVYTC 767 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p-~~~v~W~~~--g~~l~------------~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C 767 (805)
.+.+|++|+|.|... +.. ...+.|||- |+.+. ...++.+..+.....|+|.++..+|+|.|.|
T Consensus 9 ~~~~G~svtl~C~~s--~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyC 86 (112)
T d1kgcd1 9 ESNEEEPVHLPCNHS--TISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYYC 86 (112)
T ss_dssp EEETTSCEEEEEEES--CCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEEEE
T ss_pred EECCCCCEEEEEEEe--CCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeEee
Confidence 789999999999986 433 356999982 21111 1123444455667889999999999999999
Q ss_pred EEEc
Q psy2166 768 RATN 771 (805)
Q Consensus 768 ~a~N 771 (805)
.+.-
T Consensus 87 a~~~ 90 (112)
T d1kgcd1 87 ILPL 90 (112)
T ss_dssp ECCC
T ss_pred eEec
Confidence 8754
|
| >d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.78 E-value=1.2e-05 Score=65.41 Aligned_cols=72 Identities=18% Similarity=0.247 Sum_probs=48.8
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec---------------CCCCceEEE-ecCcEEEEEEcccccC
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL---------------ELGSRFKTT-ADFGFVTLDLTEVYDR 134 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i---------------~~~~~~~~~-~~~~~~~L~I~~~~~~ 134 (805)
|..+.+.+|+.++|.|... .....+.||+- |+.+ ....++... .+.....|.|.+++.+
T Consensus 5 P~~~~~~~G~svtL~C~~~---~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 81 (112)
T d2cdeb1 5 PRYLVIGTGKKITLECSQT---MGHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPS 81 (112)
T ss_dssp CSEEEEETTCCBCCEEEET---TCCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTT
T ss_pred CCEEEECCCCCEEEEEEEe---CCcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccccc
Confidence 3356889999999999976 23457999982 2211 011122222 2234568999999999
Q ss_pred CCeEEEEEEEeCC
Q psy2166 135 DQGIYTCRAWNLA 147 (805)
Q Consensus 135 D~G~Y~C~a~n~~ 147 (805)
|+|.|.|.+....
T Consensus 82 Dsa~YyCA~~~~~ 94 (112)
T d2cdeb1 82 HTSQYLCASSENI 94 (112)
T ss_dssp TCSEEEEEEECSS
T ss_pred ccccEEEEEecCC
Confidence 9999999887543
|
| >d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.78 E-value=5.3e-05 Score=60.31 Aligned_cols=87 Identities=13% Similarity=0.100 Sum_probs=54.4
Q ss_pred CCCeeeecCCc-ccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCe-EEEeeCcE----EEEEEcCCCCCCCE
Q psy2166 690 RPPQFTSEFQH-LSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI-RTVHAFGM----VVLEILGTKIEDTG 763 (805)
Q Consensus 690 ~~P~~~~~~~~-~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~-~~~~~~~~----~~L~i~~v~~~d~G 763 (805)
.||.+...... ......+.+++|.|.+.++..+...|+|++||+.+...... .....++. +.|.|..-......
T Consensus 3 ~pP~V~v~~~s~~~~~~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~ 82 (104)
T d1o0va1 3 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDR 82 (104)
T ss_dssp CCCEEEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTC
T ss_pred CCCEEEEECCCcccccCCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCC
Confidence 46655543222 10235567899999999554444589999999988754322 22333442 34777554444567
Q ss_pred EEEEEEEcCCccE
Q psy2166 764 VYTCRATNKWGQA 776 (805)
Q Consensus 764 ~Y~C~a~N~~G~~ 776 (805)
.|+|.|.+.....
T Consensus 83 ~ytC~V~H~~~t~ 95 (104)
T d1o0va1 83 TYTCQVTYQGHTF 95 (104)
T ss_dssp CEEEEEEETTEEE
T ss_pred EEEEEEEECCEeE
Confidence 8999999986443
|
| >d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.77 E-value=0.0001 Score=60.30 Aligned_cols=69 Identities=23% Similarity=0.251 Sum_probs=47.2
Q ss_pred ccCCCCeEEEEEEEeecCCC-CeEEEEEE--CCEE---c------------cCCCCeEEEeeCcEEEEEEcCCCCCCCEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQ-TMTVEFLY--NGKP---I------------EASHRIRTVHAFGMVVLEILGTKIEDTGV 764 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p-~~~v~W~~--~g~~---l------------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 764 (805)
.+.+|++++|.|.......+ ...+.|+| .|+. + ..........+.....|+|.+++.+|+|.
T Consensus 10 ~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~ 89 (117)
T d1dqta_ 10 LASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDTGL 89 (117)
T ss_dssp ECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred EEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccCEe
Confidence 78899999999998622222 23588998 2221 1 11112233455667899999999999999
Q ss_pred EEEEEEc
Q psy2166 765 YTCRATN 771 (805)
Q Consensus 765 Y~C~a~N 771 (805)
|.|.+..
T Consensus 90 YyCa~~~ 96 (117)
T d1dqta_ 90 YLCKVEL 96 (117)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 9998753
|
| >d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.76 E-value=7.1e-05 Score=59.01 Aligned_cols=68 Identities=26% Similarity=0.349 Sum_probs=51.5
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C----------CCCceEEEecC--cEEEEEEcccccCC
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E----------LGSRFKTTADF--GFVTLDLTEVYDRD 135 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~----------~~~~~~~~~~~--~~~~L~I~~~~~~D 135 (805)
..+..|++++|.|.+++..-....+.|+| .|+.+ . -.+|+.++.|. ....|.|.+++.+|
T Consensus 10 ~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eD 89 (117)
T d1c5db1 10 GLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTED 89 (117)
T ss_dssp SEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGG
T ss_pred ceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCc
Confidence 46789999999999996534455788987 23222 1 13488888763 56789999999999
Q ss_pred CeEEEEEE
Q psy2166 136 QGIYTCRA 143 (805)
Q Consensus 136 ~G~Y~C~a 143 (805)
++.|.|..
T Consensus 90 tAvYYCAr 97 (117)
T d1c5db1 90 TAIYFCTR 97 (117)
T ss_dssp CEEEEEEE
T ss_pred ceEEEEec
Confidence 99999964
|
| >d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.75 E-value=3.5e-05 Score=62.74 Aligned_cols=67 Identities=13% Similarity=0.152 Sum_probs=45.4
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEE--CCE-E--c------------cCCCCeEEE-eeCcEEEEEEcCCCCCCCEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLY--NGK-P--I------------EASHRIRTV-HAFGMVVLEILGTKIEDTGV 764 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g~-~--l------------~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~ 764 (805)
.+.+|++++|.|... .+ ...+.||| .|+ + | ....++... .++....|+|.++..+|+|.
T Consensus 11 ~~~~G~~v~l~C~~~-~~--~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~ 87 (113)
T d1j8he1 11 VKRTGEKVFLECVQD-MD--HENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQTSM 87 (113)
T ss_dssp EEETTCCEEECEEES-SC--CSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGGCEE
T ss_pred EECCCCCEEEEEEEc-CC--ccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCCccc
Confidence 788999999999875 23 35788998 111 0 0 011222222 22345689999999999999
Q ss_pred EEEEEEcC
Q psy2166 765 YTCRATNK 772 (805)
Q Consensus 765 Y~C~a~N~ 772 (805)
|.|.+...
T Consensus 88 YyCa~~~~ 95 (113)
T d1j8he1 88 YLCASSST 95 (113)
T ss_dssp EEEEEECT
T ss_pred EEeeEccC
Confidence 99998753
|
| >d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=3.3e-05 Score=62.25 Aligned_cols=83 Identities=11% Similarity=0.135 Sum_probs=55.2
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceE----E---EecC---cEEEEEEcccccC
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK----T---TADF---GFVTLDLTEVYDR 134 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~----~---~~~~---~~~~L~I~~~~~~ 134 (805)
+|.+.+-.++...+..|+.++|.|.+.+.-.....|+|++||+.+..+.... . ..++ ..+.|.|..-...
T Consensus 4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~ 83 (108)
T d1ow0a2 4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWK 83 (108)
T ss_dssp CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHH
T ss_pred CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhC
Confidence 4655554444556778999999999997533466999999999887543211 1 0111 1235677665555
Q ss_pred CCeEEEEEEEeCC
Q psy2166 135 DQGIYTCRAWNLA 147 (805)
Q Consensus 135 D~G~Y~C~a~n~~ 147 (805)
....|+|.+.+..
T Consensus 84 ~g~~ytC~V~H~s 96 (108)
T d1ow0a2 84 KGDTFSCMVGHEA 96 (108)
T ss_dssp HTCCEEEEEECTT
T ss_pred CCCEEEEEEEeCC
Confidence 5779999998753
|
| >d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.75 E-value=5.3e-05 Score=59.97 Aligned_cols=72 Identities=18% Similarity=0.323 Sum_probs=52.7
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-----------CCCceEEEecC--cEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-----------LGSRFKTTADF--GFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-----------~~~~~~~~~~~--~~~~L~I~~~~~ 133 (805)
...+..|++|+|.|.+++..-....+.|++ .|+.+ . ..+|+.++.|. ....|.|.+++.
T Consensus 9 ~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~ 88 (117)
T d1iqdb1 9 AEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRS 88 (117)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCc
Confidence 346788999999999995433455688988 23211 1 13478888764 566899999999
Q ss_pred CCCeEEEEEEEeC
Q psy2166 134 RDQGIYTCRAWNL 146 (805)
Q Consensus 134 ~D~G~Y~C~a~n~ 146 (805)
+|++.|.|.....
T Consensus 89 eDtAvYYCA~~~~ 101 (117)
T d1iqdb1 89 DDTAVYYCAVPDP 101 (117)
T ss_dssp GGCEEEEEEECSS
T ss_pred CcceEEEEeEcCC
Confidence 9999999987543
|
| >d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=3e-05 Score=61.61 Aligned_cols=87 Identities=15% Similarity=0.184 Sum_probs=54.7
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCe--EEEeeCc----EEEEEEcCCCCCCCE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI--RTVHAFG----MVVLEILGTKIEDTG 763 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~--~~~~~~~----~~~L~i~~v~~~d~G 763 (805)
.+|.+...+.+. .-..++.++|.|.+.++......|+|++||+.+..+... .....++ .+.|.|..-..+...
T Consensus 4 ~~P~V~l~~ps~-~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~ 82 (102)
T d1q0xl2 4 SSPTVTLFPPSS-EELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHS 82 (102)
T ss_dssp BCCEEEEECCCH-HHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCC
T ss_pred CCCEEEEECCCH-HHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCC
Confidence 466666544333 222466799999999654445799999999987643211 1122223 245777655556678
Q ss_pred EEEEEEEcCCccEE
Q psy2166 764 VYTCRATNKWGQAE 777 (805)
Q Consensus 764 ~Y~C~a~N~~G~~~ 777 (805)
.|+|.|.+.....+
T Consensus 83 ~ytC~V~H~~~~~~ 96 (102)
T d1q0xl2 83 SYSCQVTHEGHSSN 96 (102)
T ss_dssp EEEEEEEETTEEEE
T ss_pred EEEEEEEECCccEe
Confidence 99999998654433
|
| >d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.74 E-value=9.8e-05 Score=58.31 Aligned_cols=69 Identities=19% Similarity=0.313 Sum_probs=52.3
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-----------CCCceEEEecC--cEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-----------LGSRFKTTADF--GFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-----------~~~~~~~~~~~--~~~~L~I~~~~~ 133 (805)
...+..|+++.|.|.+++..-....+.|+| .|+.+ . ..+|+.++.|. ....|.|.+++.
T Consensus 9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~ 88 (117)
T d1jnhb1 9 AELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTS 88 (117)
T ss_dssp CEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCC
Confidence 346788999999999996545566789988 23211 1 12588888764 567899999999
Q ss_pred CCCeEEEEEE
Q psy2166 134 RDQGIYTCRA 143 (805)
Q Consensus 134 ~D~G~Y~C~a 143 (805)
+|++.|.|..
T Consensus 89 eDTAvYYCAr 98 (117)
T d1jnhb1 89 EDSAVYSCSR 98 (117)
T ss_dssp GGCEEEEEEE
T ss_pred CcceEEEEee
Confidence 9999999965
|
| >d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=1.3e-05 Score=64.12 Aligned_cols=84 Identities=12% Similarity=0.133 Sum_probs=54.2
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeE---EEeeCc----EEEEEEcCCCCCCCE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR---TVHAFG----MVVLEILGTKIEDTG 763 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~---~~~~~~----~~~L~i~~v~~~d~G 763 (805)
+|.+...+... ....++.++|.|.+.++......|+|++||+.+....... ....++ .+.|.|..-..+...
T Consensus 4 ~P~V~v~~p~~-~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~ 82 (105)
T d1fp5a2 4 APEVYAFATPE-WPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKD 82 (105)
T ss_dssp CCEEEEEECCC-CSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGG
T ss_pred CCEEEEECCCh-HHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCC
Confidence 55554433333 3456778999999995444458999999999876542111 122222 245777665556677
Q ss_pred EEEEEEEcCCcc
Q psy2166 764 VYTCRATNKWGQ 775 (805)
Q Consensus 764 ~Y~C~a~N~~G~ 775 (805)
.|+|.|.+....
T Consensus 83 ~ytC~V~H~~l~ 94 (105)
T d1fp5a2 83 EFICRAVHEAAS 94 (105)
T ss_dssp GEEEEEECTTST
T ss_pred EEEEEEEECCCC
Confidence 899999986553
|
| >d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.74 E-value=6.4e-05 Score=59.56 Aligned_cols=73 Identities=19% Similarity=0.304 Sum_probs=53.4
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-----------CCCceEEEecC--cEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-----------LGSRFKTTADF--GFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-----------~~~~~~~~~~~--~~~~L~I~~~~~ 133 (805)
...+..|++++|.|.+++..-....+.|+| .|+.+ . -.+|+.++.|. ....|.|.+++.
T Consensus 9 ~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~ 88 (118)
T d2fbjh1 9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS 88 (118)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCC
Confidence 346889999999999996534445688987 23211 1 12478888763 567899999999
Q ss_pred CCCeEEEEEEEeCC
Q psy2166 134 RDQGIYTCRAWNLA 147 (805)
Q Consensus 134 ~D~G~Y~C~a~n~~ 147 (805)
+|++.|.|......
T Consensus 89 eDtAvYYCAr~~~~ 102 (118)
T d2fbjh1 89 EDTALYYCARLHYY 102 (118)
T ss_dssp GGCEEEEEEEEETT
T ss_pred CcceEEEeeEecCC
Confidence 99999999875543
|
| >d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC beta chain, C-terminal domain species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]
Probab=97.74 E-value=4.5e-05 Score=59.69 Aligned_cols=81 Identities=15% Similarity=0.102 Sum_probs=45.6
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCe--EEEeeCc-EEEEEEcCCCCCCCEEEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI--RTVHAFG-MVVLEILGTKIEDTGVYTC 767 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~--~~~~~~~-~~~L~i~~v~~~d~G~Y~C 767 (805)
+|.+...+.. ....|+.++|.|.+.++-.+...|+|.+||+++..+... .....++ ........+..++...|+|
T Consensus 2 ~P~V~v~p~~--~~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC 79 (97)
T d1uvqb1 2 EPTVTISPSR--TEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTC 79 (97)
T ss_dssp CCEEEEEEC----------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEE
T ss_pred CCEEEEecCC--cccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEE
Confidence 3444443332 244577889999999654456899999999887654211 1122233 3333333455667789999
Q ss_pred EEEcCC
Q psy2166 768 RATNKW 773 (805)
Q Consensus 768 ~a~N~~ 773 (805)
.+....
T Consensus 80 ~V~H~s 85 (97)
T d1uvqb1 80 HVEHPS 85 (97)
T ss_dssp EEECTT
T ss_pred EEEeCC
Confidence 998753
|
| >d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class II MHC alpha chain, C-terminal domain species: Human (Homo sapiens), HLA-DM [TaxId: 9606]
Probab=97.73 E-value=9.8e-05 Score=58.20 Aligned_cols=67 Identities=15% Similarity=0.113 Sum_probs=46.8
Q ss_pred cCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEE-EeeCcE----EEEEEcCCCCCCCEEEEEEEEcCC
Q psy2166 704 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT-VHAFGM----VVLEILGTKIEDTGVYTCRATNKW 773 (805)
Q Consensus 704 v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~-~~~~~~----~~L~i~~v~~~d~G~Y~C~a~N~~ 773 (805)
+..|+..+|.|.+.++..+...|+|++||..+........ ..+++. +.|.|.. +|...|+|.+....
T Consensus 15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~~ 86 (103)
T d1hdma1 15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTP---EPSDIFSCIVTHEP 86 (103)
T ss_dssp CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECC---CTTCCEEEEEEETT
T ss_pred hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEec---CCCCEEEEEEEeCC
Confidence 4568899999999966555689999999998765544333 233442 3466543 44557999998874
|
| >d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=4.3e-05 Score=62.71 Aligned_cols=73 Identities=11% Similarity=0.136 Sum_probs=48.5
Q ss_pred CCCceecCCCcEEEEEEEecCCCC-CceEEEEEC--CEecC-------------CC-Cc-eEEEecCcEEEEEEcccccC
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDP-NLKIEWIFN--GKPLE-------------LG-SR-FKTTADFGFVTLDLTEVYDR 134 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p-~~~v~W~k~--g~~i~-------------~~-~~-~~~~~~~~~~~L~I~~~~~~ 134 (805)
|..+.+.+|+.|+|.|.....+.+ ...+.|+|. |+... .. .+ .....++..+.|.|.+++.+
T Consensus 6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~ 85 (118)
T d1i8lc_ 6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAM 85 (118)
T ss_dssp CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGG
T ss_pred CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccC
Confidence 335678899999999998632222 125889983 22110 00 11 12233456789999999999
Q ss_pred CCeEEEEEEEe
Q psy2166 135 DQGIYTCRAWN 145 (805)
Q Consensus 135 D~G~Y~C~a~n 145 (805)
|+|.|.|.+..
T Consensus 86 Dsa~YyCa~~~ 96 (118)
T d1i8lc_ 86 DTGLYICKVEL 96 (118)
T ss_dssp GCEEEEEEEEE
T ss_pred CCEEEEEeEec
Confidence 99999998864
|
| >d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.73 E-value=5.3e-05 Score=60.10 Aligned_cols=68 Identities=16% Similarity=0.278 Sum_probs=49.9
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-----------CCCceEEEec--CcEEEEEEcccccC
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-----------LGSRFKTTAD--FGFVTLDLTEVYDR 134 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-----------~~~~~~~~~~--~~~~~L~I~~~~~~ 134 (805)
..+..|++++|.|.+++.......+.|++ .|+.+ . ..+|+.+..| .....|.|.+++.+
T Consensus 10 ~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~e 89 (115)
T d1f3dh1 10 ELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFE 89 (115)
T ss_dssp EEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred cEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcC
Confidence 46788999999999985433455788987 23221 1 1247777765 35667999999999
Q ss_pred CCeEEEEEE
Q psy2166 135 DQGIYTCRA 143 (805)
Q Consensus 135 D~G~Y~C~a 143 (805)
|++.|.|..
T Consensus 90 DtAvYYCAr 98 (115)
T d1f3dh1 90 DSAVYYCAN 98 (115)
T ss_dssp GCEEEEEEE
T ss_pred CcEEEEEec
Confidence 999999964
|
| >d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=1.6e-05 Score=65.94 Aligned_cols=69 Identities=20% Similarity=0.287 Sum_probs=46.9
Q ss_pred ccCCCCeEEEEEEEeecCC-----CCeEEEEEECCEEc---------------cC--CCCeEEEee--CcEEEEEEcCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGD-----QTMTVEFLYNGKPI---------------EA--SHRIRTVHA--FGMVVLEILGTK 758 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~-----p~~~v~W~~~g~~l---------------~~--~~~~~~~~~--~~~~~L~i~~v~ 758 (805)
++.+|+.|+|.|.....+. ....+.|++.+..- .. .+|+.+..+ .+.++|.|.+++
T Consensus 12 tv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 91 (121)
T d2g5ra1 12 TVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRDAR 91 (121)
T ss_dssp EECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEECSCC
T ss_pred EEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEECCCC
Confidence 8999999999999851111 11368899853210 00 134554332 346789999999
Q ss_pred CCCCEEEEEEEEc
Q psy2166 759 IEDTGVYTCRATN 771 (805)
Q Consensus 759 ~~d~G~Y~C~a~N 771 (805)
.+|+|.|.|.+..
T Consensus 92 ~~DsG~Y~C~v~~ 104 (121)
T d2g5ra1 92 MSDAGRYFFRMEK 104 (121)
T ss_dssp GGGCEEEEEEEEE
T ss_pred hHHCEEEEEEEEe
Confidence 9999999999965
|
| >d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.73 E-value=4.5e-05 Score=62.46 Aligned_cols=66 Identities=14% Similarity=0.286 Sum_probs=46.5
Q ss_pred ccCCCCeEEEEEEEeecCC--CCeEEEEEEC--C---EEcc-------------CCCCeEEEe--eCcEEEEEEcCCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGD--QTMTVEFLYN--G---KPIE-------------ASHRIRTVH--AFGMVVLEILGTKIE 760 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~--p~~~v~W~~~--g---~~l~-------------~~~~~~~~~--~~~~~~L~i~~v~~~ 760 (805)
.+.+|++++|.|.+. +. -...+.||+- | +.|. ...++.+.. ....+.|+|.+++.+
T Consensus 12 ~~~~G~svtL~C~~~--~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~~ 89 (120)
T d1ypzf1 12 SRPRDETAQISCKVF--IESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEE 89 (120)
T ss_dssp EEETTSCEEEEEEEC--CGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGG
T ss_pred EecCCCcEEEEEEEe--cccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccccc
Confidence 778899999999986 43 2356999981 1 1110 113444433 245788999999999
Q ss_pred CCEEEEEEEE
Q psy2166 761 DTGVYTCRAT 770 (805)
Q Consensus 761 d~G~Y~C~a~ 770 (805)
|+|.|.|.+.
T Consensus 90 Dsa~YyCA~~ 99 (120)
T d1ypzf1 90 DEAIYYCSYG 99 (120)
T ss_dssp GCSEEEEEEC
T ss_pred cceeEEEEEc
Confidence 9999999764
|
| >d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.73 E-value=0.00017 Score=56.90 Aligned_cols=71 Identities=11% Similarity=0.160 Sum_probs=50.6
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC--CE--------------EccC--CCCeEEEee--CcEEEEEEcCCCCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--GK--------------PIEA--SHRIRTVHA--FGMVVLEILGTKIEDT 762 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g~--------------~l~~--~~~~~~~~~--~~~~~L~i~~v~~~d~ 762 (805)
.+++|++++|+|.+.++....-.+.|++- |+ ...+ .+|+.+..+ .....|+|++++.+|+
T Consensus 11 lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eDt 90 (116)
T d7fabh1 11 LVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAADT 90 (116)
T ss_dssp EECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred eECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccccc
Confidence 68999999999999832234457889881 11 1111 256666654 4478899999999999
Q ss_pred EEEEEEEEcCC
Q psy2166 763 GVYTCRATNKW 773 (805)
Q Consensus 763 G~Y~C~a~N~~ 773 (805)
+.|.|...-..
T Consensus 91 AvYyCAr~~~~ 101 (116)
T d7fabh1 91 AVYYCARNLIA 101 (116)
T ss_dssp EEEEEEEECSS
T ss_pred eEEEeeeecCC
Confidence 99999864433
|
| >d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.72 E-value=0.00011 Score=58.27 Aligned_cols=71 Identities=14% Similarity=0.290 Sum_probs=52.7
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-----------CCCceEEEec--CcEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-----------LGSRFKTTAD--FGFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-----------~~~~~~~~~~--~~~~~L~I~~~~~ 133 (805)
...+..|++++|.|.+++..-....+.|+| .|+.+ . -.+|+.++.| .....|.|.+++.
T Consensus 8 ~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~ 87 (117)
T d1um5h1 8 PVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTS 87 (117)
T ss_dssp CEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCC
Confidence 457888999999999996434556789987 23221 1 1247888776 3567899999999
Q ss_pred CCCeEEEEEEEe
Q psy2166 134 RDQGIYTCRAWN 145 (805)
Q Consensus 134 ~D~G~Y~C~a~n 145 (805)
+|++.|.|....
T Consensus 88 eDtAvYYCAr~~ 99 (117)
T d1um5h1 88 EDSAVYYCARSS 99 (117)
T ss_dssp GGCEEEEEEEEE
T ss_pred CcceEEEEeecc
Confidence 999999997544
|
| >d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.72 E-value=7.4e-05 Score=58.91 Aligned_cols=72 Identities=18% Similarity=0.272 Sum_probs=53.0
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEEC--CEe------cC-----------CCCceEEEec--CcEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKP------LE-----------LGSRFKTTAD--FGFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~------i~-----------~~~~~~~~~~--~~~~~L~I~~~~~ 133 (805)
...+..|++++|.|.+++..-....+.|+|- |+. |. -.+|+.++.| .+...|.|.+++.
T Consensus 9 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~ 88 (117)
T d1jpth1 9 GGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRA 88 (117)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCC
Confidence 3578899999999999965344567899872 321 11 1247888876 3567899999999
Q ss_pred CCCeEEEEEEEeC
Q psy2166 134 RDQGIYTCRAWNL 146 (805)
Q Consensus 134 ~D~G~Y~C~a~n~ 146 (805)
+|++.|+|.....
T Consensus 89 eDTAvYYCAr~~~ 101 (117)
T d1jpth1 89 EDTAVYYCARDTA 101 (117)
T ss_dssp GGCEEEEEEEECS
T ss_pred CCceEEEEeecCC
Confidence 9999999976443
|
| >d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.72 E-value=4.5e-05 Score=58.63 Aligned_cols=77 Identities=13% Similarity=0.179 Sum_probs=50.3
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceE--EEe-eCC---EEEEEEccCCCCCCE
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR--TFH-DFG---IVILDILYCYEENSG 567 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~--~~~-~~~---~~~L~i~~v~~~d~G 567 (805)
.||.+.+... ...++.++|.|.+.++-+....|+|.+||+.+..+.... ... ++. .+.|.|.. .+..
T Consensus 2 ~pP~v~v~~~----~~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~---~~~~ 74 (89)
T d2mhaa1 2 DSPKAHVTHH----SRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPL---GKEQ 74 (89)
T ss_dssp BCCEEEECCE----ESCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEES---STTT
T ss_pred CCCEeEEEcc----CCCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecC---cCCC
Confidence 3566655321 235678999999998777788999999999987543221 112 222 33466653 3444
Q ss_pred EEEEEEEcCC
Q psy2166 568 VYECRATNKY 577 (805)
Q Consensus 568 ~Y~C~a~n~~ 577 (805)
.|+|.+.+..
T Consensus 75 ~ytC~V~H~~ 84 (89)
T d2mhaa1 75 YYTCHVYHQG 84 (89)
T ss_dssp TCEEEEECSS
T ss_pred EEEEEEEECC
Confidence 7999998753
|
| >d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.72 E-value=8.2e-05 Score=58.93 Aligned_cols=69 Identities=17% Similarity=0.280 Sum_probs=50.9
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-----------CCCceEEEec--CcEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-----------LGSRFKTTAD--FGFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-----------~~~~~~~~~~--~~~~~L~I~~~~~ 133 (805)
...+..|++++|.|.+++..-....+.|+| .|+.+ . ...|+.++.| .....|.|.+++.
T Consensus 9 ~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~ 88 (117)
T d1mfah1 9 TVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTS 88 (117)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCC
Confidence 457788999999999996433455788987 33211 1 1237777766 3567899999999
Q ss_pred CCCeEEEEEE
Q psy2166 134 RDQGIYTCRA 143 (805)
Q Consensus 134 ~D~G~Y~C~a 143 (805)
+|++.|.|..
T Consensus 89 eDtAvYYCAr 98 (117)
T d1mfah1 89 EDSAVYYCTR 98 (117)
T ss_dssp GGCEEEEEEE
T ss_pred CcceEEEEec
Confidence 9999999965
|
| >d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), alpha-chain [TaxId: 9606]
Probab=97.72 E-value=1.4e-06 Score=68.50 Aligned_cols=70 Identities=23% Similarity=0.346 Sum_probs=49.3
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEE--CCEEcc------------CCCCeEEE--eeCcEEEEEEcCCCCCCCEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLY--NGKPIE------------ASHRIRTV--HAFGMVVLEILGTKIEDTGVYT 766 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g~~l~------------~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~ 766 (805)
+|.+|++|+|.|... + ....+.||| .|+.+. ...++.+. .....+.|.|.+++.+|+|.|.
T Consensus 4 sV~eG~~vtL~C~~~--~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy 80 (96)
T d1ymmd1 4 SIQEGENATMNCSYK--T-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYF 80 (96)
T ss_dssp CCSSCCCCCBCCBCS--S-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCE
T ss_pred eECCCCCEEEEEEEe--C-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEe
Confidence 799999999999875 3 456899998 222111 12333332 2234567999999999999999
Q ss_pred EEEEcCCcc
Q psy2166 767 CRATNKWGQ 775 (805)
Q Consensus 767 C~a~N~~G~ 775 (805)
|.+....|.
T Consensus 81 CA~~~~~g~ 89 (96)
T d1ymmd1 81 CATDTTSGT 89 (96)
T ss_dssp EEEEETTSC
T ss_pred EeEecCCCC
Confidence 998766553
|
| >d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.71 E-value=9.5e-05 Score=58.46 Aligned_cols=70 Identities=13% Similarity=0.232 Sum_probs=51.2
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEe------cCC-----------CCceEEEec--CcEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKP------LEL-----------GSRFKTTAD--FGFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~------i~~-----------~~~~~~~~~--~~~~~L~I~~~~~ 133 (805)
...+..|+++.|.|.+++..-....+.|+| .|+. |.. .+|+.++.| .....|.|.+++.
T Consensus 9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~ 88 (118)
T d2jelh1 9 PELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTS 88 (118)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccccccc
Confidence 456789999999999995433445789987 2321 111 247777765 3567899999999
Q ss_pred CCCeEEEEEEE
Q psy2166 134 RDQGIYTCRAW 144 (805)
Q Consensus 134 ~D~G~Y~C~a~ 144 (805)
+|++.|.|...
T Consensus 89 eDTAvYYCAr~ 99 (118)
T d2jelh1 89 EDSAIYYCARV 99 (118)
T ss_dssp GGCEEEEEEEE
T ss_pred CcceeeeEEEe
Confidence 99999999543
|
| >d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.71 E-value=6.7e-05 Score=58.97 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=52.7
Q ss_pred CCceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-C----------CCceEEEecC--cEEEEEEcccc
Q psy2166 74 PEFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-L----------GSRFKTTADF--GFVTLDLTEVY 132 (805)
Q Consensus 74 ~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-~----------~~~~~~~~~~--~~~~L~I~~~~ 132 (805)
....+..|+++.|.|.+++..-....+.|+| .|+.+ . . .+|+.++.|. ....|.|.+++
T Consensus 8 g~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~ 87 (116)
T d1mjuh1 8 GAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLT 87 (116)
T ss_dssp SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred CCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccC
Confidence 3457889999999999996544456788987 23211 1 1 2478887664 56789999999
Q ss_pred cCCCeEEEEEEE
Q psy2166 133 DRDQGIYTCRAW 144 (805)
Q Consensus 133 ~~D~G~Y~C~a~ 144 (805)
.+|++.|.|...
T Consensus 88 ~eDtAvYYCAr~ 99 (116)
T d1mjuh1 88 SDDSAVYYCANK 99 (116)
T ss_dssp GGGCEEEEEEEE
T ss_pred CCCceEEEEccc
Confidence 999999999753
|
| >d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.71 E-value=6.5e-05 Score=60.17 Aligned_cols=69 Identities=19% Similarity=0.346 Sum_probs=50.2
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-----------CCCceEEEecC--cEEEEEEcccccC
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-----------LGSRFKTTADF--GFVTLDLTEVYDR 134 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-----------~~~~~~~~~~~--~~~~L~I~~~~~~ 134 (805)
..+..|++|+|.|.+++..-....+.|++ .|+.+ . ..+|+.++.|. ....|+|.+++.+
T Consensus 10 ~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~e 89 (119)
T d1qnzh_ 10 ELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSD 89 (119)
T ss_dssp CEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGG
T ss_pred ceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCcc
Confidence 36788999999999985433445689987 23221 1 12477777653 5668999999999
Q ss_pred CCeEEEEEEE
Q psy2166 135 DQGIYTCRAW 144 (805)
Q Consensus 135 D~G~Y~C~a~ 144 (805)
|++.|.|...
T Consensus 90 DsAvYYCA~~ 99 (119)
T d1qnzh_ 90 DSAVYYCAIH 99 (119)
T ss_dssp GCEEEEEEEC
T ss_pred ceeEEEEEEe
Confidence 9999999653
|
| >d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.71 E-value=6.5e-05 Score=59.03 Aligned_cols=68 Identities=18% Similarity=0.277 Sum_probs=50.9
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEE--CCEe------cC-----------CCCceEEEecC--cEEEEEEcccccC
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKP------LE-----------LGSRFKTTADF--GFVTLDLTEVYDR 134 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~------i~-----------~~~~~~~~~~~--~~~~L~I~~~~~~ 134 (805)
..+..|++++|.|.+++..-....+.|++ .|+. |. ..+|+.++.|. ....|.|.+++.+
T Consensus 10 ~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~e 89 (114)
T d1indh1 10 DSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSE 89 (114)
T ss_dssp CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred ceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccC
Confidence 47889999999999996544455688987 2321 11 12478888763 5678999999999
Q ss_pred CCeEEEEEE
Q psy2166 135 DQGIYTCRA 143 (805)
Q Consensus 135 D~G~Y~C~a 143 (805)
|++.|.|..
T Consensus 90 DtAvYYCA~ 98 (114)
T d1indh1 90 DTALYFCAS 98 (114)
T ss_dssp GCEEEEEEC
T ss_pred cccEEEECC
Confidence 999999964
|
| >d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.71 E-value=2.6e-05 Score=64.87 Aligned_cols=85 Identities=15% Similarity=0.167 Sum_probs=58.4
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceE---EE-----eeCC---EEEEEEccCC
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR---TF-----HDFG---IVILDILYCY 562 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~---~~-----~~~~---~~~L~i~~v~ 562 (805)
.||.+.+..+....+..+..++|.|.+.++......|+|++||+.+..+.... .. .++. .+.|.|..-.
T Consensus 3 ~PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~ 82 (127)
T d1ogae2 3 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATF 82 (127)
T ss_dssp BCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHH
T ss_pred cCCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHH
Confidence 68888876665544667889999999998766688999999999885431100 00 0111 2468887655
Q ss_pred CCCCE-EEEEEEEcCCc
Q psy2166 563 EENSG-VYECRATNKYG 578 (805)
Q Consensus 563 ~~d~G-~Y~C~a~n~~g 578 (805)
..+.| .|+|++.+...
T Consensus 83 W~~~g~~ytC~V~H~~l 99 (127)
T d1ogae2 83 WQNPRNHFRCQVQFYGL 99 (127)
T ss_dssp HTCTTCEEEEEEEECCB
T ss_pred hCCCCCEEEEEEEECCC
Confidence 45656 79999987543
|
| >d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: CD1, alpha-3 domain species: Human (Homo sapiens), CD1a [TaxId: 9606]
Probab=97.70 E-value=3.2e-05 Score=60.40 Aligned_cols=78 Identities=9% Similarity=0.115 Sum_probs=50.5
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc--eEEEeeCC---EEEEEEccCCCCCCEE
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR--YRTFHDFG---IVILDILYCYEENSGV 568 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~~~~---~~~L~i~~v~~~d~G~ 568 (805)
.+|.+.+.... ...++.++|.|.+.++-+....++|++||..+..... .....++. .+.|.|. .+|...
T Consensus 2 v~P~V~l~~~~---~~~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ 75 (96)
T d2h26a1 2 VKPEAWLSSGP---SPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVA---DGEAAG 75 (96)
T ss_dssp BCCEEEEEEES---CCSTTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEE---GGGCTT
T ss_pred cCCEEEEEcCC---CCCCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEe---CccCCE
Confidence 35666654333 2345689999999987666779999999998754321 11122233 2346665 355568
Q ss_pred EEEEEEcCC
Q psy2166 569 YECRATNKY 577 (805)
Q Consensus 569 Y~C~a~n~~ 577 (805)
|+|.+.+..
T Consensus 76 ytC~V~H~s 84 (96)
T d2h26a1 76 LSCRVKHSS 84 (96)
T ss_dssp EEEEEEEGG
T ss_pred EEEEEEeCC
Confidence 999998754
|
| >d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.70 E-value=7.8e-05 Score=59.85 Aligned_cols=69 Identities=25% Similarity=0.355 Sum_probs=52.7
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-----------CCCceEEEecC--cEEEEEEcccccC
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-----------LGSRFKTTADF--GFVTLDLTEVYDR 134 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-----------~~~~~~~~~~~--~~~~L~I~~~~~~ 134 (805)
-.|..|+++.|.|.+++..-....+.|+| .|+.+ . -.+|+.++.|+ ....|.|.+++.+
T Consensus 9 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~e 88 (124)
T d1zvya1 9 GSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSE 88 (124)
T ss_dssp EECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred ceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCC
Confidence 46788999999999996655566789998 23221 1 12478887763 5778999999999
Q ss_pred CCeEEEEEEE
Q psy2166 135 DQGIYTCRAW 144 (805)
Q Consensus 135 D~G~Y~C~a~ 144 (805)
|++.|.|...
T Consensus 89 DtAvYYCAr~ 98 (124)
T d1zvya1 89 DTAIYTCGAT 98 (124)
T ss_dssp GCEEEEEEEC
T ss_pred cceEEEEeec
Confidence 9999999764
|
| >d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]
Probab=97.70 E-value=7.5e-05 Score=58.97 Aligned_cols=70 Identities=23% Similarity=0.300 Sum_probs=52.3
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEEC--CEec------C----------CCCceEEEecC--cEEEEEEcccccCC
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL------E----------LGSRFKTTADF--GFVTLDLTEVYDRD 135 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i------~----------~~~~~~~~~~~--~~~~L~I~~~~~~D 135 (805)
..+..|+.++|.|.+++..-....+.|+|. |+.+ . -.+|+.++.|. ....|.|.+++.+|
T Consensus 10 ~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eD 89 (116)
T d1a2yb_ 10 GLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDD 89 (116)
T ss_dssp SEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGG
T ss_pred ceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeecc
Confidence 467899999999999965445667889982 3221 1 12377777653 56789999999999
Q ss_pred CeEEEEEEEe
Q psy2166 136 QGIYTCRAWN 145 (805)
Q Consensus 136 ~G~Y~C~a~n 145 (805)
++.|+|....
T Consensus 90 TAvYYCAr~~ 99 (116)
T d1a2yb_ 90 TARYYCARER 99 (116)
T ss_dssp CEEEEEEEES
T ss_pred ceEEEEEEeC
Confidence 9999997543
|
| >d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.70 E-value=4e-05 Score=59.68 Aligned_cols=67 Identities=19% Similarity=0.332 Sum_probs=47.3
Q ss_pred eecCCCcEEEEEEEecCCCCCceEEEEEC--CEec------C----------CCCceEEEecC--cEEEEEEcccccCCC
Q psy2166 77 KLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPL------E----------LGSRFKTTADF--GFVTLDLTEVYDRDQ 136 (805)
Q Consensus 77 ~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i------~----------~~~~~~~~~~~--~~~~L~I~~~~~~D~ 136 (805)
.|..|++++|.|.+++.......+.|++. |+.+ . ..+|+.++.|. ....|.|.+++.+|+
T Consensus 4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt 83 (107)
T d1sjva_ 4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT 83 (107)
T ss_dssp CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence 46789999999999854334556889872 2221 1 12478888763 567899999999999
Q ss_pred eEEEEEE
Q psy2166 137 GIYTCRA 143 (805)
Q Consensus 137 G~Y~C~a 143 (805)
+.|.|..
T Consensus 84 AvYyCA~ 90 (107)
T d1sjva_ 84 AVYYCYT 90 (107)
T ss_dssp SEEEEEE
T ss_pred eeeeEec
Confidence 9999964
|
| >d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.69 E-value=0.00016 Score=57.47 Aligned_cols=67 Identities=18% Similarity=0.322 Sum_probs=49.5
Q ss_pred ccCCCCeEEEEEEEeecCCC--CeEEEEEEC--CE--------------EccC--CCCeEEEee--CcEEEEEEcCCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQ--TMTVEFLYN--GK--------------PIEA--SHRIRTVHA--FGMVVLEILGTKIE 760 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p--~~~v~W~~~--g~--------------~l~~--~~~~~~~~~--~~~~~L~i~~v~~~ 760 (805)
.+++|++++|+|.+. |.. .-.+.|+|- |+ ...+ .+|+.+..+ .....|+|.+++.+
T Consensus 10 ~vkPg~sl~LsC~~S--G~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~e 87 (119)
T d1kxvc_ 10 TVPAGGSLRLSCAAS--GNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPD 87 (119)
T ss_dssp EECTTCCEEEEEEEE--SCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGG
T ss_pred eECCCCCeEEEEEEc--CCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcC
Confidence 689999999999998 643 457889882 11 1111 156776655 45778999999999
Q ss_pred CCEEEEEEEEc
Q psy2166 761 DTGVYTCRATN 771 (805)
Q Consensus 761 d~G~Y~C~a~N 771 (805)
|++.|.|.+.-
T Consensus 88 DtA~YYCAr~~ 98 (119)
T d1kxvc_ 88 DTAMYYCKPSL 98 (119)
T ss_dssp GCEEEEEEEEE
T ss_pred CcceEeeeecc
Confidence 99999997654
|
| >d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.69 E-value=9.2e-05 Score=58.85 Aligned_cols=68 Identities=21% Similarity=0.312 Sum_probs=51.5
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-----------CCCceEEEecC--cEEEEEEcccccC
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-----------LGSRFKTTADF--GFVTLDLTEVYDR 134 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-----------~~~~~~~~~~~--~~~~L~I~~~~~~ 134 (805)
..|..|++++|.|.+++.......+.|+| .|+.+ . ..+|+.++.|. ....|.|.+++.+
T Consensus 10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~e 89 (121)
T d2p49b1 10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPE 89 (121)
T ss_dssp EEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGG
T ss_pred ceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeecccc
Confidence 46789999999999996545566789987 23211 1 12478888763 5678999999999
Q ss_pred CCeEEEEEE
Q psy2166 135 DQGIYTCRA 143 (805)
Q Consensus 135 D~G~Y~C~a 143 (805)
|++.|.|..
T Consensus 90 DtAvYYCAr 98 (121)
T d2p49b1 90 DTATYYCAA 98 (121)
T ss_dssp GCEEEEEEE
T ss_pred ceeEEeeec
Confidence 999999975
|
| >d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.69 E-value=9e-05 Score=57.68 Aligned_cols=70 Identities=20% Similarity=0.322 Sum_probs=52.1
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEe------cC-------------CCCceEEEec--CcEEEEEEccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKP------LE-------------LGSRFKTTAD--FGFVTLDLTEV 131 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~------i~-------------~~~~~~~~~~--~~~~~L~I~~~ 131 (805)
...|..|++++|.|.+++..-....+.|++ .|+. |. -.+|+.++.| .....|.|.++
T Consensus 9 ~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL 88 (109)
T d2ck0h1 9 GGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNL 88 (109)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred CCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCC
Confidence 457889999999999996534455788987 2311 11 1248888876 35678999999
Q ss_pred ccCCCeEEEEEEE
Q psy2166 132 YDRDQGIYTCRAW 144 (805)
Q Consensus 132 ~~~D~G~Y~C~a~ 144 (805)
+.+|++.|.|...
T Consensus 89 ~~eDTAvYYCAr~ 101 (109)
T d2ck0h1 89 KTEDTGIYYCVRG 101 (109)
T ss_dssp CGGGCEEEEEEEE
T ss_pred CHhHCEEEEEEEc
Confidence 9999999999853
|
| >d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]
Probab=97.69 E-value=0.0002 Score=56.54 Aligned_cols=71 Identities=18% Similarity=0.310 Sum_probs=53.3
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C----------CCCceEEEecC--cEEEEEEcccccCC
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E----------LGSRFKTTADF--GFVTLDLTEVYDRD 135 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~----------~~~~~~~~~~~--~~~~L~I~~~~~~D 135 (805)
..+..|+++.|.|.+++..-....+.|++ .|+.+ . -.+|+.++.|. ....|.|.+++.+|
T Consensus 10 ~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eD 89 (118)
T d1lo4h1 10 DLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSED 89 (118)
T ss_dssp CEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGG
T ss_pred ceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCc
Confidence 36789999999999996655566889998 23221 1 12477787763 56789999999999
Q ss_pred CeEEEEEEEeC
Q psy2166 136 QGIYTCRAWNL 146 (805)
Q Consensus 136 ~G~Y~C~a~n~ 146 (805)
++.|.|.....
T Consensus 90 tA~YyCAr~~~ 100 (118)
T d1lo4h1 90 TAIYYCARGTS 100 (118)
T ss_dssp CEEEEEEEEET
T ss_pred ceEEEecccCC
Confidence 99999976544
|
| >d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.69 E-value=5.8e-05 Score=59.64 Aligned_cols=69 Identities=13% Similarity=0.287 Sum_probs=51.1
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEe------cCC-----------CCceEEEecC--cEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKP------LEL-----------GSRFKTTADF--GFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~------i~~-----------~~~~~~~~~~--~~~~L~I~~~~~ 133 (805)
...+..|+.++|.|.+++..-....+.|+| .|+. |.. .+|+.++.|. ....|.|.+++.
T Consensus 9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~ 88 (118)
T d1nlbh1 9 PELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKN 88 (118)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeeccc
Confidence 346789999999999996433455689987 2321 111 2478888764 567899999999
Q ss_pred CCCeEEEEEE
Q psy2166 134 RDQGIYTCRA 143 (805)
Q Consensus 134 ~D~G~Y~C~a 143 (805)
+|++.|.|..
T Consensus 89 eDtAvYYCAr 98 (118)
T d1nlbh1 89 EDTATYFCAR 98 (118)
T ss_dssp GGCEEEEEEE
T ss_pred CcceEEEEee
Confidence 9999999953
|
| >d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.69 E-value=9.1e-05 Score=58.86 Aligned_cols=70 Identities=20% Similarity=0.301 Sum_probs=51.8
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-----------CCCceEEEec--CcEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-----------LGSRFKTTAD--FGFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-----------~~~~~~~~~~--~~~~~L~I~~~~~ 133 (805)
...+..|+++.|.|.+++.......+.|++ .|+.+ . ..+|+.++.| .....|.|.+++.
T Consensus 9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~ 88 (119)
T d1rz7h1 9 AEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRS 88 (119)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCc
Confidence 346788999999999996544555789987 22211 1 1248888776 3567899999999
Q ss_pred CCCeEEEEEEE
Q psy2166 134 RDQGIYTCRAW 144 (805)
Q Consensus 134 ~D~G~Y~C~a~ 144 (805)
+|++.|+|...
T Consensus 89 eDTAvYYCAr~ 99 (119)
T d1rz7h1 89 EDTAVYYCAAD 99 (119)
T ss_dssp GGCEEEEEEEC
T ss_pred ccceEEEEeec
Confidence 99999999753
|
| >d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.68 E-value=0.0001 Score=57.20 Aligned_cols=67 Identities=16% Similarity=0.314 Sum_probs=44.3
Q ss_pred CCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-----------CCCceEEEec--CcEEEEEEcccccCCCeE
Q psy2166 80 EAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-----------LGSRFKTTAD--FGFVTLDLTEVYDRDQGI 138 (805)
Q Consensus 80 ~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-----------~~~~~~~~~~--~~~~~L~I~~~~~~D~G~ 138 (805)
.|++|+|.|.+++..-....+.|+| .|+.+ . ..+|+.++.| .....|+|.+++.+|++.
T Consensus 1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv 80 (103)
T d1oari_ 1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV 80 (103)
T ss_dssp CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence 4899999999995433455789997 33322 1 1257888776 356789999999999999
Q ss_pred EEEEEEeC
Q psy2166 139 YTCRAWNL 146 (805)
Q Consensus 139 Y~C~a~n~ 146 (805)
|.|.....
T Consensus 81 YYCAr~~~ 88 (103)
T d1oari_ 81 YYCARMWY 88 (103)
T ss_dssp EEEEEEEC
T ss_pred EEeEEECC
Confidence 99986544
|
| >d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.68 E-value=0.00017 Score=57.19 Aligned_cols=70 Identities=20% Similarity=0.304 Sum_probs=52.5
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-------------CCCceEEEec--CcEEEEEEcccc
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-------------LGSRFKTTAD--FGFVTLDLTEVY 132 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-------------~~~~~~~~~~--~~~~~L~I~~~~ 132 (805)
..|..|++++|.|.+++.......+.|+| .|+.+ . -.+|+.++.| .+...|.|.+++
T Consensus 10 ~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~ 89 (120)
T d1dlfh_ 10 GLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLR 89 (120)
T ss_dssp CEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred ceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeecc
Confidence 46788999999999996544566789987 33221 1 1247888776 356789999999
Q ss_pred cCCCeEEEEEEEe
Q psy2166 133 DRDQGIYTCRAWN 145 (805)
Q Consensus 133 ~~D~G~Y~C~a~n 145 (805)
.+|++.|.|....
T Consensus 90 ~eDtAvYYCA~~~ 102 (120)
T d1dlfh_ 90 AEDTGIYYCTGIY 102 (120)
T ss_dssp GGGCEEEEEEEEB
T ss_pred CCCceEEEeeEec
Confidence 9999999997644
|
| >d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]
Probab=97.68 E-value=9.7e-05 Score=58.33 Aligned_cols=67 Identities=21% Similarity=0.239 Sum_probs=48.6
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEEC--CE------Ecc-C----------CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLYN--GK------PIE-A----------SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~~--g~------~l~-~----------~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |... -.+.|+|- |+ .+. . ..|+.+..| .....|+|.+++.
T Consensus 11 ~~kPG~sl~LsC~~S--G~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~ 88 (118)
T d1nlbh1 11 LKKPGETVKISCKAS--GYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKN 88 (118)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCG
T ss_pred eECCCCCEEEEEEEc--CCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeeccc
Confidence 689999999999998 6543 46889871 11 111 1 246666655 4577899999999
Q ss_pred CCCEEEEEEEEcC
Q psy2166 760 EDTGVYTCRATNK 772 (805)
Q Consensus 760 ~d~G~Y~C~a~N~ 772 (805)
+|++.|.|. ...
T Consensus 89 eDtAvYYCA-r~~ 100 (118)
T d1nlbh1 89 EDTATYFCA-RFL 100 (118)
T ss_dssp GGCEEEEEE-EEC
T ss_pred CcceEEEEe-eeC
Confidence 999999994 443
|
| >d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.67 E-value=0.0001 Score=58.78 Aligned_cols=71 Identities=15% Similarity=0.293 Sum_probs=51.8
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEE--CCEe------cC-----------CCCceEEEecC--cEEEEEEcccccC
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKP------LE-----------LGSRFKTTADF--GFVTLDLTEVYDR 134 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~------i~-----------~~~~~~~~~~~--~~~~L~I~~~~~~ 134 (805)
..+..|+.++|.|.+++..-....+.|+| .|+. |. ..+|+.+..|. ....|.|.+++.+
T Consensus 10 ~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~e 89 (123)
T d1mqkh_ 10 DLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSE 89 (123)
T ss_dssp CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred ceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccC
Confidence 46789999999999995433445688987 2321 11 12477887653 5667999999999
Q ss_pred CCeEEEEEEEeC
Q psy2166 135 DQGIYTCRAWNL 146 (805)
Q Consensus 135 D~G~Y~C~a~n~ 146 (805)
|++.|.|.....
T Consensus 90 DtAvYYCAr~~~ 101 (123)
T d1mqkh_ 90 DTAMYYCVRHEY 101 (123)
T ss_dssp GCEEEEEEEEET
T ss_pred cccceeEEecCC
Confidence 999999976543
|
| >d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]
Probab=97.67 E-value=0.00015 Score=57.69 Aligned_cols=64 Identities=19% Similarity=0.281 Sum_probs=47.9
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEEC--CEE--------------ccC--CCCeEEEee--CcEEEEEEcCCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLYN--GKP--------------IEA--SHRIRTVHA--FGMVVLEILGTKIE 760 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~~--g~~--------------l~~--~~~~~~~~~--~~~~~L~i~~v~~~ 760 (805)
.+++|++++|+|.+. |... -.+.|++- |+. ..+ ..|+.+..| .....|+|++++.+
T Consensus 11 ~vkPG~sl~LsC~~S--G~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~e 88 (120)
T d1dn0b1 11 LLKPSETLSLTCAVY--GGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA 88 (120)
T ss_dssp EECTTSCEEEEEEEE--SSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred EECCCCCEEEEEEEc--cccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccc
Confidence 689999999999998 6544 46889881 211 111 257777654 44678999999999
Q ss_pred CCEEEEEE
Q psy2166 761 DTGVYTCR 768 (805)
Q Consensus 761 d~G~Y~C~ 768 (805)
|++.|.|.
T Consensus 89 DtA~YYCA 96 (120)
T d1dn0b1 89 DTAVYYCA 96 (120)
T ss_dssp GCEEEEEE
T ss_pred cccEEEEE
Confidence 99999994
|
| >d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Ligand binding domain of lir-1 (ilt2) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=4.9e-06 Score=65.24 Aligned_cols=76 Identities=18% Similarity=0.206 Sum_probs=53.3
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCcEEEEEEcCCCCCCCEEEEEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFGMVVLEILGTKIEDTGVYTCRA 769 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a 769 (805)
.+|.|...|..+ |..|++|+|.|.. ..+...+.++|+|.......+.. ...+....+.|.+|+.+|+|.|+|.-
T Consensus 3 PkP~Lsa~Ps~~--V~~G~~VTL~C~~---~~~~~~f~L~keg~~~~~~~~~~-~~~~~~a~F~i~~v~~~~~G~Y~C~y 76 (96)
T d1ugna1 3 PKPTLWAEPGSV--ITQGSPVTLRCQG---GQETQEYRLYREKKTAPWITRIP-QELVKKGQFPIPSITWEHTGRYRCYY 76 (96)
T ss_dssp CCCEEEEESCSE--EETTCCEEEEEEC---CTTCCCEEEEESSSCCHHHHTSC-HHHHTTTEEEESSCCGGGCEEEEEEE
T ss_pred CCCEEEeECCCc--cCCCCcEEEEEeC---CCCCCEEEEEECCCCcccEEEcc-CCCCCEEEEEEEecCHHHCCeEEEEE
Confidence 468888888765 8899999999996 35667888999885321100000 01112236899999999999999987
Q ss_pred Ec
Q psy2166 770 TN 771 (805)
Q Consensus 770 ~N 771 (805)
..
T Consensus 77 ~~ 78 (96)
T d1ugna1 77 GS 78 (96)
T ss_dssp EE
T ss_pred eC
Confidence 54
|
| >d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Second domain of the Flt-1 receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=8.9e-05 Score=56.98 Aligned_cols=76 Identities=18% Similarity=0.293 Sum_probs=54.9
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEE-ECCEecCC-CCceEEEecCcEEEEEEcccccCCCeEEEEEEEeCCeeEEE
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWI-FNGKPLEL-GSRFKTTADFGFVTLDLTEVYDRDQGIYTCRAWNLAGETFT 152 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~-k~g~~i~~-~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~ 152 (805)
.+.+.+|+.++|+|.++ +|...++-+ +++..+.. +..+.-.... -++|.+++..|.|.|.|.|... |....
T Consensus 14 ~V~v~eg~~~vIPC~vT---~P~~~VtL~~~~~~~~~p~g~~v~~Dpk~---Gf~I~~~~~~~~g~y~C~a~~~-g~~~~ 86 (95)
T d1fltx_ 14 IIHMTEGRELVIPCRVT---SPNITVTLKKFPLDTLIPDGKRIIWDSRK---GFIISNATYKEIGLLTCEATVN-GHLYK 86 (95)
T ss_dssp EEEECTTSCEEECCCBS---CTTSCCEEEETTTEEECCCSSSEEEETTT---EEEESSCCGGGCEEEEEEEEET-TEEEE
T ss_pred EEEEeCCCCEEEEccCC---CCCceeEEEeccCCccCCCCCEEEECCCC---CEEEeCCCcccCeEEEEEEEEC-CEEEE
Confidence 46789999999999998 777777644 46666654 4444444443 3889999999999999999876 44444
Q ss_pred EEEEE
Q psy2166 153 STTIY 157 (805)
Q Consensus 153 ~~~l~ 157 (805)
+..+.
T Consensus 87 S~yl~ 91 (95)
T d1fltx_ 87 TNYLT 91 (95)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 44443
|
| >d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.66 E-value=0.00011 Score=58.85 Aligned_cols=69 Identities=23% Similarity=0.346 Sum_probs=50.4
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC--CEE------c---------cC--CCCeEEEee--CcEEEEEEcCCCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--GKP------I---------EA--SHRIRTVHA--FGMVVLEILGTKIED 761 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g~~------l---------~~--~~~~~~~~~--~~~~~L~i~~v~~~d 761 (805)
.+++|++++|+|.+.++....-.+.|+|- |+. + .+ ..|+.+..+ .....|+|++++.+|
T Consensus 10 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~eD 89 (124)
T d1zvya1 10 SVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSED 89 (124)
T ss_dssp ECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred eECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCCc
Confidence 68899999999999833334457899881 110 1 11 256766655 457889999999999
Q ss_pred CEEEEEEEEc
Q psy2166 762 TGVYTCRATN 771 (805)
Q Consensus 762 ~G~Y~C~a~N 771 (805)
++.|.|....
T Consensus 90 tAvYYCAr~~ 99 (124)
T d1zvya1 90 TAIYTCGATR 99 (124)
T ss_dssp CEEEEEEECS
T ss_pred ceEEEEeecc
Confidence 9999998754
|
| >d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.66 E-value=3.4e-05 Score=62.49 Aligned_cols=66 Identities=20% Similarity=0.352 Sum_probs=45.7
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC--CE-------------Ecc---CCCCeEEEee-CcEEEEEEcCCCCCCCE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--GK-------------PIE---ASHRIRTVHA-FGMVVLEILGTKIEDTG 763 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g~-------------~l~---~~~~~~~~~~-~~~~~L~i~~v~~~d~G 763 (805)
.+.+|++++|.|... + -...+.|||- |+ ... ...++..... +..+.|+|.++..+|+|
T Consensus 10 ~~~~G~svtl~C~~~--~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa 86 (111)
T d2esve1 10 VIEKGQTVTLRCDPI--S-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELEDSG 86 (111)
T ss_dssp EEETTCCEEEEEECC--T-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGGCE
T ss_pred EECCCCCEEEEEEEC--C-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCCCc
Confidence 789999999999865 3 3458999971 11 111 1233433332 23468999999999999
Q ss_pred EEEEEEEc
Q psy2166 764 VYTCRATN 771 (805)
Q Consensus 764 ~Y~C~a~N 771 (805)
.|.|.+..
T Consensus 87 ~YyCa~~~ 94 (111)
T d2esve1 87 VYFCASSQ 94 (111)
T ss_dssp EEEEEEES
T ss_pred eEEEeeeC
Confidence 99998764
|
| >d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD28 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=0.00014 Score=59.61 Aligned_cols=70 Identities=13% Similarity=0.061 Sum_probs=45.0
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEE-EEEC-CEe---c------------CCCCceEE--EecCcEEEEEEcccccCCC
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIE-WIFN-GKP---L------------ELGSRFKT--TADFGFVTLDLTEVYDRDQ 136 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~-W~k~-g~~---i------------~~~~~~~~--~~~~~~~~L~I~~~~~~D~ 136 (805)
..+.+|+.|+|.|..+.......... |++. +.. + ....++.. ...+..++|+|.+++.+|+
T Consensus 10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds 89 (118)
T d1yjdc1 10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQT 89 (118)
T ss_dssp EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGC
T ss_pred cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccC
Confidence 45778999999999873322333333 4442 111 1 01224443 3345677899999999999
Q ss_pred eEEEEEEEe
Q psy2166 137 GIYTCRAWN 145 (805)
Q Consensus 137 G~Y~C~a~n 145 (805)
|.|.|.+..
T Consensus 90 avYyCa~~~ 98 (118)
T d1yjdc1 90 DIYFCKIEV 98 (118)
T ss_dssp EEEEEEEEE
T ss_pred eEEEEEEec
Confidence 999998754
|
| >d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.66 E-value=0.0001 Score=58.62 Aligned_cols=71 Identities=14% Similarity=0.230 Sum_probs=52.5
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-----------CCCceEEEecC--cEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-----------LGSRFKTTADF--GFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-----------~~~~~~~~~~~--~~~~L~I~~~~~ 133 (805)
...+..|++++|.|.+++..-....+.|+| .|+.+ . ..+|+.++.|. ....|.|.+++.
T Consensus 10 ~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~ 89 (122)
T d1vgeh1 10 AEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRP 89 (122)
T ss_dssp CEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCC
Confidence 456899999999999995433455789988 23211 1 12578887763 567899999999
Q ss_pred CCCeEEEEEEEe
Q psy2166 134 RDQGIYTCRAWN 145 (805)
Q Consensus 134 ~D~G~Y~C~a~n 145 (805)
+|++.|+|....
T Consensus 90 eDtA~YYCAr~~ 101 (122)
T d1vgeh1 90 EDTAVYYCARDP 101 (122)
T ss_dssp GGCEEEEEEEET
T ss_pred CcceEEEEeecC
Confidence 999999997653
|
| >d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]
Probab=97.65 E-value=0.00014 Score=57.51 Aligned_cols=70 Identities=14% Similarity=0.308 Sum_probs=51.6
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEe------cC-----------CCCceEEEecC--cEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKP------LE-----------LGSRFKTTADF--GFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~------i~-----------~~~~~~~~~~~--~~~~L~I~~~~~ 133 (805)
...+..|+.+.|.|.+++..-....+.|+| .|+. |. ..+|+.++.|. ....|.|.+++.
T Consensus 9 ~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~ 88 (118)
T d1ct8b1 9 AVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTT 88 (118)
T ss_dssp CEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCC
Confidence 457888999999999996544456788987 2321 11 12377777653 567899999999
Q ss_pred CCCeEEEEEEE
Q psy2166 134 RDQGIYTCRAW 144 (805)
Q Consensus 134 ~D~G~Y~C~a~ 144 (805)
+|++.|+|...
T Consensus 89 eDtAvYYCAr~ 99 (118)
T d1ct8b1 89 EDSAIYYCARY 99 (118)
T ss_dssp GGCEEEEEEEE
T ss_pred CcceEEEEeee
Confidence 99999999654
|
| >d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.65 E-value=0.00014 Score=58.34 Aligned_cols=71 Identities=20% Similarity=0.294 Sum_probs=53.1
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec---------------C--CCCceEEEecC--cEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL---------------E--LGSRFKTTADF--GFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i---------------~--~~~~~~~~~~~--~~~~L~I~~~~~ 133 (805)
...+..|+++.|.|.+++..-....+.|+| .|+.+ . -.+|+.++.|+ ....|.|.+++.
T Consensus 9 ~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~ 88 (128)
T d2nxyd1 9 AEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRS 88 (128)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccc
Confidence 346889999999999996544455678987 22111 1 13588888773 677899999999
Q ss_pred CCCeEEEEEEEe
Q psy2166 134 RDQGIYTCRAWN 145 (805)
Q Consensus 134 ~D~G~Y~C~a~n 145 (805)
+|++.|.|....
T Consensus 89 eDTA~YYCAr~~ 100 (128)
T d2nxyd1 89 DDTAVYFCAGVY 100 (128)
T ss_dssp GGCEEEEEEEEE
T ss_pred cCceEEEEeEEe
Confidence 999999998754
|
| >d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: B and T lymphocyte attenuator, Btla species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.64 E-value=0.00038 Score=49.84 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=53.4
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEE-CC---EEccCCCCeEEEee----CcEEEEEEcCCCCCCCEEEEEEEEcCCc
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLY-NG---KPIEASHRIRTVHA----FGMVVLEILGTKIEDTGVYTCRATNKWG 774 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~-~g---~~l~~~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~G 774 (805)
.+-.|+.+.|.|.+. .-.-.|.++|-| +| .+|....+...... ...++|.+..+-..|.|.|+|.|.=..|
T Consensus 14 s~~~G~~f~leCPVk-YC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s~ 92 (104)
T d1xaua_ 14 SAWTGELFKIECPVK-YCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQ 92 (104)
T ss_dssp EECTTSCEEEEEEEE-CSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTE
T ss_pred eEecCCceEecCcch-hhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCChh
Confidence 788999999999997 334568999987 55 45665545444333 2357899999999999999999854444
|
| >d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.64 E-value=0.0001 Score=58.98 Aligned_cols=70 Identities=19% Similarity=0.304 Sum_probs=51.1
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-----------CCCceEEEec--CcEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-----------LGSRFKTTAD--FGFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-----------~~~~~~~~~~--~~~~~L~I~~~~~ 133 (805)
...+..|+.++|.|.+++.......+.|+| .|+.+ . ..+|+.+..| .....|.|.+++.
T Consensus 9 ~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~ 88 (121)
T d1j05b_ 9 AELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTS 88 (121)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCc
Confidence 456889999999999985433445788987 23221 1 1247777765 3567899999999
Q ss_pred CCCeEEEEEEE
Q psy2166 134 RDQGIYTCRAW 144 (805)
Q Consensus 134 ~D~G~Y~C~a~ 144 (805)
+|++.|.|...
T Consensus 89 eDtAvYYCAr~ 99 (121)
T d1j05b_ 89 EDTAVYYCAPF 99 (121)
T ss_dssp GGCEEEEEEEE
T ss_pred CcceEEEeEee
Confidence 99999999764
|
| >d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.64 E-value=0.00017 Score=56.12 Aligned_cols=66 Identities=21% Similarity=0.300 Sum_probs=49.0
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEE--CCE--E----c-----------cC--CCCeEEEee--CcEEEEEEcCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLY--NGK--P----I-----------EA--SHRIRTVHA--FGMVVLEILGT 757 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~--~g~--~----l-----------~~--~~~~~~~~~--~~~~~L~i~~v 757 (805)
.+++|++++|+|.+. |... -.+.|++ -|+ + + .+ ..|+.+..| .....|+|+++
T Consensus 11 ~vkPG~Sl~LsC~~S--G~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i~sL 88 (109)
T d2ck0h1 11 LVQPRGSLKLSCAAS--GFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQMNNL 88 (109)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred eECCCCCeEEEEEEC--CCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecccCC
Confidence 689999999999998 6443 4788987 111 1 1 11 137777665 55788999999
Q ss_pred CCCCCEEEEEEEE
Q psy2166 758 KIEDTGVYTCRAT 770 (805)
Q Consensus 758 ~~~d~G~Y~C~a~ 770 (805)
+.+|++.|.|.-.
T Consensus 89 ~~eDTAvYYCAr~ 101 (109)
T d2ck0h1 89 KTEDTGIYYCVRG 101 (109)
T ss_dssp CGGGCEEEEEEEE
T ss_pred CHhHCEEEEEEEc
Confidence 9999999999843
|
| >d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: CD28 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=0.00013 Score=59.84 Aligned_cols=70 Identities=6% Similarity=-0.038 Sum_probs=44.3
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEE-EEEEC--CE--Ec------------cCCCCeEE--EeeCcEEEEEEcCCCCCCCE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTV-EFLYN--GK--PI------------EASHRIRT--VHAFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v-~W~~~--g~--~l------------~~~~~~~~--~~~~~~~~L~i~~v~~~d~G 763 (805)
.+.+|++++|.|...........+ -|++. +. .+ ....++.+ ....+.+.|+|.+++.+|+|
T Consensus 11 ~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa 90 (118)
T d1yjdc1 11 LVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTD 90 (118)
T ss_dssp EECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGCE
T ss_pred EEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccCe
Confidence 456799999999987222233333 45551 11 00 11133333 33456778999999999999
Q ss_pred EEEEEEEcC
Q psy2166 764 VYTCRATNK 772 (805)
Q Consensus 764 ~Y~C~a~N~ 772 (805)
.|.|.+...
T Consensus 91 vYyCa~~~~ 99 (118)
T d1yjdc1 91 IYFCKIEVM 99 (118)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEecc
Confidence 999987553
|
| >d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.63 E-value=8.3e-05 Score=59.55 Aligned_cols=85 Identities=22% Similarity=0.209 Sum_probs=54.7
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEE---Ee-eCC---EEEEEEccCCCCCC
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRT---FH-DFG---IVILDILYCYEENS 566 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~---~~-~~~---~~~L~i~~v~~~d~ 566 (805)
.+|.+.+.++....+ .+..++|.|.+.++-.....|+|++||+.+..+..... .. ++. .+.|.|..-.....
T Consensus 4 ~~P~V~l~~ps~~~~-~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g 82 (107)
T d1mjul2 4 AAPTVSIFPPSSEQL-TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERH 82 (107)
T ss_dssp BCCEEEEECCCHHHH-TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTC
T ss_pred cCCEEEEECCCHHHh-cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCC
Confidence 567776655544433 46789999999986566789999999998864321111 11 122 23577764333345
Q ss_pred EEEEEEEEcCCcc
Q psy2166 567 GVYECRATNKYGS 579 (805)
Q Consensus 567 G~Y~C~a~n~~g~ 579 (805)
..|+|.+.+....
T Consensus 83 ~~ytC~V~H~~~~ 95 (107)
T d1mjul2 83 NSYTCEATHKTST 95 (107)
T ss_dssp CEEEEEEECTTCS
T ss_pred CEEEEEEEECCCC
Confidence 6899999986544
|
| >d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.62 E-value=0.0002 Score=56.43 Aligned_cols=68 Identities=16% Similarity=0.248 Sum_probs=50.2
Q ss_pred ccCCCCeEEEEEEEeecCCC--CeEEEEEEC--C---------------EEccC--CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQ--TMTVEFLYN--G---------------KPIEA--SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p--~~~v~W~~~--g---------------~~l~~--~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |.. .-.+.|+|- | ....+ ..|+.+..| .....|+|++++.
T Consensus 11 ~vkpg~sl~LsC~~S--G~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~ 88 (117)
T d1jpth1 11 LVQPGGSLRLSCAAS--GFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRA 88 (117)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred eECCCCCEEEEEEEc--CCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCC
Confidence 689999999999999 654 357889871 1 11111 256666655 4578899999999
Q ss_pred CCCEEEEEEEEcC
Q psy2166 760 EDTGVYTCRATNK 772 (805)
Q Consensus 760 ~d~G~Y~C~a~N~ 772 (805)
+|++.|.|.....
T Consensus 89 eDTAvYYCAr~~~ 101 (117)
T d1jpth1 89 EDTAVYYCARDTA 101 (117)
T ss_dssp GGCEEEEEEEECS
T ss_pred CCceEEEEeecCC
Confidence 9999999976543
|
| >d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.62 E-value=0.00012 Score=58.58 Aligned_cols=70 Identities=23% Similarity=0.328 Sum_probs=52.3
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-----------CCCceEEEecC--cEEEEEEcccccC
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-----------LGSRFKTTADF--GFVTLDLTEVYDR 134 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-----------~~~~~~~~~~~--~~~~L~I~~~~~~ 134 (805)
-.|..|+.++|.|.+++.......+.|+| .|+.+ . ..+|+.++.|. ....|.|.+++.+
T Consensus 10 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~e 89 (125)
T d1op3h1 10 GLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVE 89 (125)
T ss_dssp EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred ceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCc
Confidence 46789999999999996534455689987 23221 1 12478888764 6778999999999
Q ss_pred CCeEEEEEEEe
Q psy2166 135 DQGIYTCRAWN 145 (805)
Q Consensus 135 D~G~Y~C~a~n 145 (805)
|++.|.|....
T Consensus 90 DTAvYYCAr~~ 100 (125)
T d1op3h1 90 DTAIYYCARKG 100 (125)
T ss_dssp GCEEEEEEEEC
T ss_pred cceeEeEeecc
Confidence 99999997643
|
| >d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.61 E-value=0.00019 Score=56.49 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=49.0
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEEC--CE--------------EccC--CCCeEEEee--CcEEEEEEcCCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLYN--GK--------------PIEA--SHRIRTVHA--FGMVVLEILGTKIE 760 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~~--g~--------------~l~~--~~~~~~~~~--~~~~~L~i~~v~~~ 760 (805)
.+++|++++|+|.+. |... -.+.|++- |+ ...+ ..|+.+..+ .....|+|++++.+
T Consensus 11 lvkPg~sl~LsC~~S--G~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~e 88 (117)
T d1c5db1 11 LVQPSQTLSLTCTVS--GFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE 88 (117)
T ss_dssp EECTTSCEEEEEEEC--SSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGG
T ss_pred eECCCCCeEEEEEEc--CCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccC
Confidence 689999999999998 6544 46889881 11 1111 257777665 44688999999999
Q ss_pred CCEEEEEEEE
Q psy2166 761 DTGVYTCRAT 770 (805)
Q Consensus 761 d~G~Y~C~a~ 770 (805)
|++.|.|...
T Consensus 89 DtAvYYCAr~ 98 (117)
T d1c5db1 89 DTAIYFCTRE 98 (117)
T ss_dssp GCEEEEEEEC
T ss_pred cceEEEEecc
Confidence 9999999643
|
| >d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.61 E-value=5.9e-05 Score=58.80 Aligned_cols=77 Identities=9% Similarity=0.142 Sum_probs=50.2
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceE--EEee-CC---EEEEEEccCCCCCCE
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR--TFHD-FG---IVILDILYCYEENSG 567 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~--~~~~-~~---~~~L~i~~v~~~d~G 567 (805)
.||++.+.... ..+..++|.|.+.++-+....|+|++||+.+..+.... ...+ +. .+.|.+. ..+..
T Consensus 2 ~PP~v~v~~~~----~~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~---~~~~~ 74 (95)
T d1k5na1 2 DPPKTHVTHHP----ISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVP---SGEEQ 74 (95)
T ss_dssp BCCEEEEEEEE----EETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEE---TTCGG
T ss_pred cCCccEEEecc----CCCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEE---cCCCC
Confidence 46777664322 23567999999999888899999999999886542111 1122 22 2234443 44556
Q ss_pred EEEEEEEcCC
Q psy2166 568 VYECRATNKY 577 (805)
Q Consensus 568 ~Y~C~a~n~~ 577 (805)
.|+|++.+..
T Consensus 75 ~ytC~V~H~~ 84 (95)
T d1k5na1 75 RYTCHVQHEG 84 (95)
T ss_dssp GEEEEEECTT
T ss_pred EEEEEEEECc
Confidence 8999998753
|
| >d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.61 E-value=2.4e-05 Score=61.95 Aligned_cols=86 Identities=8% Similarity=-0.018 Sum_probs=53.6
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCC---EEEEEEccCCCCCCEEEE
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG---IVILDILYCYEENSGVYE 570 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~ 570 (805)
.+|.+....+... -..++.++|.|.+.++-.....|+|.++|.............++. .+.|.|..-.. +.|.|+
T Consensus 4 ~aP~V~~l~p~~~-~~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w-~~~~yt 81 (101)
T d1kcvh2 4 TAPSVFPLVPGSA-TAAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTW-PSASVT 81 (101)
T ss_dssp BCCEEEEECCCSC-CTTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTT-TTSCCE
T ss_pred CCCEEEeECCCcc-ccCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhc-CCCeEE
Confidence 4566655433322 346889999999998766788999998885432110111122222 34577765444 367899
Q ss_pred EEEEcCCcceE
Q psy2166 571 CRATNKYGSDV 581 (805)
Q Consensus 571 C~a~n~~g~~~ 581 (805)
|.+.+......
T Consensus 82 C~V~H~~~~~~ 92 (101)
T d1kcvh2 82 CLVAHPKSSTA 92 (101)
T ss_dssp EEEEEGGGTEE
T ss_pred EEEEeCCCCee
Confidence 99998765543
|
| >d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.61 E-value=0.0001 Score=58.42 Aligned_cols=69 Identities=13% Similarity=0.249 Sum_probs=50.8
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEe------cCC-----------CCceEEEecC--cEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKP------LEL-----------GSRFKTTADF--GFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~------i~~-----------~~~~~~~~~~--~~~~L~I~~~~~ 133 (805)
...+..|+++.|.|.+++.......+.|+| .|+. |.. .+|+.++.|. ....|.|.+++.
T Consensus 9 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~ 88 (119)
T d1eapb1 9 TELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTS 88 (119)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccC
Confidence 346788999999999996433455789997 2322 221 2477777653 567899999999
Q ss_pred CCCeEEEEEE
Q psy2166 134 RDQGIYTCRA 143 (805)
Q Consensus 134 ~D~G~Y~C~a 143 (805)
+|++.|.|..
T Consensus 89 eDTAvYYCAr 98 (119)
T d1eapb1 89 EDSAVYFCKR 98 (119)
T ss_dssp GGCEEEEEEE
T ss_pred CcceEEEEEE
Confidence 9999999964
|
| >d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.61 E-value=0.00012 Score=57.91 Aligned_cols=70 Identities=16% Similarity=0.266 Sum_probs=52.2
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-----------CCCceEEEecC--cEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-----------LGSRFKTTADF--GFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-----------~~~~~~~~~~~--~~~~L~I~~~~~ 133 (805)
...+..|++++|.|.+++..-....+.|+| .|+.+ . -.+|+.++.|. +...|.|.+++.
T Consensus 9 ~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~ 88 (120)
T d1ad9b1 9 AEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRS 88 (120)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCC
Confidence 346889999999999996534455788987 23221 1 12577887763 677899999999
Q ss_pred CCCeEEEEEEE
Q psy2166 134 RDQGIYTCRAW 144 (805)
Q Consensus 134 ~D~G~Y~C~a~ 144 (805)
+|++.|+|...
T Consensus 89 eDTAvYYCAr~ 99 (120)
T d1ad9b1 89 EDTAFYFCARE 99 (120)
T ss_dssp GGCEEEEEEEE
T ss_pred CcceEEEEEEc
Confidence 99999999754
|
| >d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.60 E-value=0.0001 Score=58.97 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=51.6
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-----------CCCceEEEecC--cEEEEEEcccccC
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-----------LGSRFKTTADF--GFVTLDLTEVYDR 134 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-----------~~~~~~~~~~~--~~~~L~I~~~~~~ 134 (805)
..|..|++++|.|.+++..-....+.|+| .|+.+ . -.+|+.++.|. ....|.|.+++.+
T Consensus 10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~e 89 (122)
T d1bz7b1 10 GLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSE 89 (122)
T ss_dssp EEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred ceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeeccc
Confidence 46788999999999995433455689988 22111 1 12578887763 5678999999999
Q ss_pred CCeEEEEEEEe
Q psy2166 135 DQGIYTCRAWN 145 (805)
Q Consensus 135 D~G~Y~C~a~n 145 (805)
|++.|.|....
T Consensus 90 DTAvYYCAr~~ 100 (122)
T d1bz7b1 90 DTAIYYCTRGG 100 (122)
T ss_dssp GCEEEEEEEEC
T ss_pred CceEEEeecCC
Confidence 99999997643
|
| >d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: CD1, alpha-3 domain species: Human (Homo sapiens), CD1a [TaxId: 9606]
Probab=97.60 E-value=5.5e-05 Score=59.00 Aligned_cols=77 Identities=8% Similarity=0.009 Sum_probs=47.8
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeE-EEeeCc----EEEEEEcCCCCCCCEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR-TVHAFG----MVVLEILGTKIEDTGVY 765 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~-~~~~~~----~~~L~i~~v~~~d~G~Y 765 (805)
+|.+...... ...++.++|.|.+.++......|+|++||..+....... ....++ .+.|.|.. +|...|
T Consensus 3 ~P~V~l~~~~---~~~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~y 76 (96)
T d2h26a1 3 KPEAWLSSGP---SPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVAD---GEAAGL 76 (96)
T ss_dssp CCEEEEEEES---CCSTTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEEG---GGCTTE
T ss_pred CCEEEEEcCC---CCCCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEeC---ccCCEE
Confidence 4555443332 234678999999996544456999999998876542211 122233 23466643 455689
Q ss_pred EEEEEcCC
Q psy2166 766 TCRATNKW 773 (805)
Q Consensus 766 ~C~a~N~~ 773 (805)
+|.+.+..
T Consensus 77 tC~V~H~s 84 (96)
T d2h26a1 77 SCRVKHSS 84 (96)
T ss_dssp EEEEEEGG
T ss_pred EEEEEeCC
Confidence 99998754
|
| >d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus), gamma2 [TaxId: 10090]
Probab=97.60 E-value=4.8e-05 Score=60.40 Aligned_cols=83 Identities=17% Similarity=0.117 Sum_probs=52.1
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc--eEEEeeCC---EEEEEEccCCCCCCEE
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR--YRTFHDFG---IVILDILYCYEENSGV 568 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~~~~---~~~L~i~~v~~~d~G~ 568 (805)
.+|.+.+..+... ...++.++|.|.+.++.+....|+|++||........ .....++. .+.|.|..-.......
T Consensus 3 ~~P~V~l~~ps~~-~~~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ 81 (102)
T d1igtb4 3 RAPQVYVLPPPEE-EMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNS 81 (102)
T ss_dssp BCCEEEEECCCGG-GTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCC
T ss_pred CCCEEEEECCCHH-HhcCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCE
Confidence 3466665444333 3357889999999987666789999999987643211 11112222 3356666433334558
Q ss_pred EEEEEEcCC
Q psy2166 569 YECRATNKY 577 (805)
Q Consensus 569 Y~C~a~n~~ 577 (805)
|+|.+.+..
T Consensus 82 ytC~V~H~~ 90 (102)
T d1igtb4 82 YSCSVVHEG 90 (102)
T ss_dssp EEEEEECTT
T ss_pred EEEEEEeCC
Confidence 999999864
|
| >d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.60 E-value=0.00022 Score=56.24 Aligned_cols=68 Identities=15% Similarity=0.201 Sum_probs=49.1
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEE----CC------------E-EccC--CCCeEEEee--CcEEEEEEcCCCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLY----NG------------K-PIEA--SHRIRTVHA--FGMVVLEILGTKIED 761 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~----~g------------~-~l~~--~~~~~~~~~--~~~~~L~i~~v~~~d 761 (805)
.+++|++++|+|.+.++....-.+.|++ .| . ...+ ..|+.+..+ .....|+|++++.+|
T Consensus 11 ~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~eD 90 (117)
T d1jnhb1 11 LARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSED 90 (117)
T ss_dssp ECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCCc
Confidence 6799999999999993223445789988 11 1 1111 157777655 456889999999999
Q ss_pred CEEEEEEEE
Q psy2166 762 TGVYTCRAT 770 (805)
Q Consensus 762 ~G~Y~C~a~ 770 (805)
++.|.|...
T Consensus 91 TAvYYCAr~ 99 (117)
T d1jnhb1 91 SAVYSCSRG 99 (117)
T ss_dssp CEEEEEEEE
T ss_pred ceEEEEeec
Confidence 999999653
|
| >d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Fc (IgG) receptor, alpha-3 domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.60 E-value=6.7e-05 Score=57.82 Aligned_cols=77 Identities=16% Similarity=0.235 Sum_probs=48.5
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCc----EEEEEEcCCCCCCCEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG----MVVLEILGTKIEDTGVY 765 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y 765 (805)
.||.+..... ...++.++|.|.+.++-.+...|+|.+||+.+...........++ .+.|.|. .+|...|
T Consensus 2 ~PP~V~v~~~----~~~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~---~~~~~~y 74 (91)
T d3frua1 2 EPPSMRLKAR----PGNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVK---RGDEHHY 74 (91)
T ss_dssp BCCEEEEEEE----ECSTTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEE---TTCGGGE
T ss_pred CCCEEEEEec----CCCCCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEEC---CCCCCEE
Confidence 4666655322 223568999999996555557999999999876542222222232 2346664 3455689
Q ss_pred EEEEEcCC
Q psy2166 766 TCRATNKW 773 (805)
Q Consensus 766 ~C~a~N~~ 773 (805)
+|++....
T Consensus 75 tC~V~H~s 82 (91)
T d3frua1 75 QCQVEHEG 82 (91)
T ss_dssp EEEEECTT
T ss_pred EEEEEeCC
Confidence 99998753
|
| >d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=2.8e-05 Score=61.87 Aligned_cols=85 Identities=13% Similarity=0.137 Sum_probs=53.3
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCe--EEEeeCc----EEEEEEcCCCCCCCE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI--RTVHAFG----MVVLEILGTKIEDTG 763 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~--~~~~~~~----~~~L~i~~v~~~d~G 763 (805)
.+|.+...+... .-..++.++|.|.+.++......|+|++||+.+..+... .....++ .+.|.|.....+...
T Consensus 4 ~~P~V~~~~ps~-~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~ 82 (102)
T d1rzfl2 4 AAPSVTLFPPSS-EELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHR 82 (102)
T ss_dssp BCCEEEEECCCH-HHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSS
T ss_pred CCCEEEEECCCH-HHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCC
Confidence 467666544333 223467799999999554455699999999988754211 1122223 245776554444466
Q ss_pred EEEEEEEcCCcc
Q psy2166 764 VYTCRATNKWGQ 775 (805)
Q Consensus 764 ~Y~C~a~N~~G~ 775 (805)
.|+|.|.+....
T Consensus 83 ~ytC~V~H~~~~ 94 (102)
T d1rzfl2 83 SYSCQVTHEGST 94 (102)
T ss_dssp CEEEEEEETTEE
T ss_pred EEEEEEEECCcc
Confidence 799999987533
|
| >d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=97.59 E-value=0.00018 Score=58.26 Aligned_cols=69 Identities=28% Similarity=0.394 Sum_probs=49.7
Q ss_pred ceecCCCcEEEEEEEecC--CCCCceEEEEE--CCEec--------------C--CCCceEEEecC--cEEEEEEccccc
Q psy2166 76 FKLGEAQPLHLEAQVEPK--NDPNLKIEWIF--NGKPL--------------E--LGSRFKTTADF--GFVTLDLTEVYD 133 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~--~~p~~~v~W~k--~g~~i--------------~--~~~~~~~~~~~--~~~~L~I~~~~~ 133 (805)
..|..|+.++|.|.+++. ......+.|+| .|+.+ . ..+|+.+..+. ....|.|.+++.
T Consensus 10 ~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~ 89 (126)
T d1etzb1 10 GILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDT 89 (126)
T ss_dssp SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred ceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceecccc
Confidence 467889999999999853 12334567986 22211 0 13478887763 567899999999
Q ss_pred CCCeEEEEEEE
Q psy2166 134 RDQGIYTCRAW 144 (805)
Q Consensus 134 ~D~G~Y~C~a~ 144 (805)
+|++.|.|...
T Consensus 90 eDtAvYyCAr~ 100 (126)
T d1etzb1 90 SDTATYHCARR 100 (126)
T ss_dssp GGCEEEEEEEE
T ss_pred cccceEEEEEe
Confidence 99999999853
|
| >d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.59 E-value=0.00016 Score=58.14 Aligned_cols=69 Identities=19% Similarity=0.274 Sum_probs=51.2
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-C----------CCceEEEecC--cEEEEEEcccccC
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-L----------GSRFKTTADF--GFVTLDLTEVYDR 134 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-~----------~~~~~~~~~~--~~~~L~I~~~~~~ 134 (805)
..|..|+++.|.|.+++.......+.|+| .|+.+ . . .+|+.++.|. ....|.|.+++.+
T Consensus 9 ~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~e 88 (126)
T d1rjca1 9 GSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPE 88 (126)
T ss_dssp EEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGG
T ss_pred ceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCcc
Confidence 46789999999999996545566789998 23221 1 1 2478888764 4567999999999
Q ss_pred CCeEEEEEEE
Q psy2166 135 DQGIYTCRAW 144 (805)
Q Consensus 135 D~G~Y~C~a~ 144 (805)
|++.|.|...
T Consensus 89 DTAvYYCAr~ 98 (126)
T d1rjca1 89 DTAMYYCAAD 98 (126)
T ss_dssp GCEEEEEEEC
T ss_pred cCceeEEEee
Confidence 9999999754
|
| >d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.59 E-value=6.2e-05 Score=61.02 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=44.3
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEE--CC-EE--c----------cC--CCCeEE-EeeCcEEEEEEcCCCCCCCEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLY--NG-KP--I----------EA--SHRIRT-VHAFGMVVLEILGTKIEDTGV 764 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g-~~--l----------~~--~~~~~~-~~~~~~~~L~i~~v~~~d~G~ 764 (805)
.+.+|++++|.|... .+ ...+.||+ .| .+ | .. ..++.. ........|.|.++..+|+|.
T Consensus 10 ~~~~G~svtl~C~~s-~~--~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsav 86 (112)
T d2bnub1 10 VLKTGQSMTLQCAQD-MN--HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSV 86 (112)
T ss_dssp EEETTCCEEEEEEES-SC--CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGCEE
T ss_pred EECCCCCEEEEEEEE-CC--ccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHCEE
Confidence 789999999999986 23 45799998 12 11 0 00 112211 122234579999999999999
Q ss_pred EEEEEEc
Q psy2166 765 YTCRATN 771 (805)
Q Consensus 765 Y~C~a~N 771 (805)
|.|.+..
T Consensus 87 YyCA~~~ 93 (112)
T d2bnub1 87 YFCASSY 93 (112)
T ss_dssp EEEEEEC
T ss_pred EEEeecC
Confidence 9998764
|
| >d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.59 E-value=6.9e-05 Score=60.92 Aligned_cols=67 Identities=13% Similarity=0.232 Sum_probs=46.6
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEE--CCE-E--c------------cCCCCeEEE-eeCcEEEEEEcCCCCCCCEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLY--NGK-P--I------------EASHRIRTV-HAFGMVVLEILGTKIEDTGV 764 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g~-~--l------------~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~ 764 (805)
.+.+|++++|.|... + -...+.||| .|+ + | ....++... .+.....|+|.++..+|+|.
T Consensus 10 ~~~~G~svtl~C~~~--~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~ 86 (113)
T d2ntsp1 10 IKTRGQQVTLSCSPI--S-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSAL 86 (113)
T ss_dssp EEETTCCEEEEEECS--T-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEE
T ss_pred EECCCCCEEEEEEEC--C-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCccccee
Confidence 789999999999975 3 235789998 221 1 1 111233322 23345789999999999999
Q ss_pred EEEEEEcC
Q psy2166 765 YTCRATNK 772 (805)
Q Consensus 765 Y~C~a~N~ 772 (805)
|.|.+...
T Consensus 87 YyCA~~~~ 94 (113)
T d2ntsp1 87 YLCASSLA 94 (113)
T ss_dssp EEEEEESS
T ss_pred eeeeeeCC
Confidence 99998753
|
| >d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.59 E-value=0.00012 Score=58.49 Aligned_cols=69 Identities=17% Similarity=0.296 Sum_probs=50.8
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEE--CCEe------cC-----------CCCceEEEec--CcEEEEEEcccccC
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKP------LE-----------LGSRFKTTAD--FGFVTLDLTEVYDR 134 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~------i~-----------~~~~~~~~~~--~~~~~L~I~~~~~~ 134 (805)
..+..|++++|.|.+++..-....+.|+| .|+. |. ..+|+.++.| .....|.|.+++.+
T Consensus 10 ~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~e 89 (121)
T d1ol0a_ 10 GLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAE 89 (121)
T ss_dssp EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred ceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecccc
Confidence 36788999999999995433344688987 2322 11 1247888876 35778999999999
Q ss_pred CCeEEEEEEE
Q psy2166 135 DQGIYTCRAW 144 (805)
Q Consensus 135 D~G~Y~C~a~ 144 (805)
|++.|.|...
T Consensus 90 DtAvYYCAr~ 99 (121)
T d1ol0a_ 90 DTAVYYCARE 99 (121)
T ss_dssp GCEEEEEEEC
T ss_pred cceEEEEEEe
Confidence 9999999753
|
| >d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]
Probab=97.59 E-value=8.4e-05 Score=59.36 Aligned_cols=70 Identities=26% Similarity=0.279 Sum_probs=50.7
Q ss_pred CceecCCCcEEEEEEEecCCC--CCceEEEEE--CCEec------CC----------CCceEEEecC--cEEEEEEcccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKND--PNLKIEWIF--NGKPL------EL----------GSRFKTTADF--GFVTLDLTEVY 132 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~--p~~~v~W~k--~g~~i------~~----------~~~~~~~~~~--~~~~L~I~~~~ 132 (805)
...|..|++++|.|.+++... ....+.|+| .|+.+ .. .+|+.++.|. ....|.|.+++
T Consensus 9 ~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~ 88 (120)
T d1ai1h1 9 PAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVT 88 (120)
T ss_dssp CSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCC
T ss_pred CceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeee
Confidence 346889999999999985321 334678987 23222 11 1478887763 56789999999
Q ss_pred cCCCeEEEEEEE
Q psy2166 133 DRDQGIYTCRAW 144 (805)
Q Consensus 133 ~~D~G~Y~C~a~ 144 (805)
.+|++.|.|...
T Consensus 89 ~eDtAvYYCAr~ 100 (120)
T d1ai1h1 89 NEDTAMYYCSRE 100 (120)
T ss_dssp GGGCEEEEEEEE
T ss_pred ccceeEEEEEec
Confidence 999999999754
|
| >d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.59 E-value=3.4e-05 Score=62.69 Aligned_cols=73 Identities=19% Similarity=0.321 Sum_probs=48.7
Q ss_pred CCcccccCCCCeEEEEEEEeecCCCCeEEEEEEC--CE---Ec------------cCCCCeEEE-eeCcEEEEEEcCCCC
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYN--GK---PI------------EASHRIRTV-HAFGMVVLEILGTKI 759 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g~---~l------------~~~~~~~~~-~~~~~~~L~i~~v~~ 759 (805)
|..+ .+.+|++++|.|... .+ ...+.|||- |+ .| ....++... .....+.|+|.++..
T Consensus 8 P~~~-~~~~G~~v~l~C~~~-~~--~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 83 (113)
T d1nfdb1 8 PRHI-IKEKGGRSVLTCIPI-SG--HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALEL 83 (113)
T ss_dssp CSEE-EEETTCCCEEEEECC-TT--CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCG
T ss_pred CCEE-EEeCCCCEEEEEEeC-CC--CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCc
Confidence 3344 789999999999875 23 357999982 11 11 011233332 223356899999999
Q ss_pred CCCEEEEEEEEcCCc
Q psy2166 760 EDTGVYTCRATNKWG 774 (805)
Q Consensus 760 ~d~G~Y~C~a~N~~G 774 (805)
+|+|.|.|.+....|
T Consensus 84 ~Dsa~YyCa~~~~~~ 98 (113)
T d1nfdb1 84 EDSAMYFCASSLRWG 98 (113)
T ss_dssp GGCEEECEEEESSSC
T ss_pred CCceeEEEEeecCCC
Confidence 999999998875444
|
| >d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=8.8e-05 Score=60.77 Aligned_cols=70 Identities=24% Similarity=0.264 Sum_probs=46.6
Q ss_pred ccCCCCeEEEEEEEeecCCCC-eEEEEEEC--CEE---c------------cCCCCeEEEeeCcEEEEEEcCCCCCCCEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT-MTVEFLYN--GKP---I------------EASHRIRTVHAFGMVVLEILGTKIEDTGV 764 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~-~~v~W~~~--g~~---l------------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 764 (805)
.+.+|++++|.|.....+.+. ..|.|+|. |+. + ..........+...+.|.|.++..+|+|.
T Consensus 10 ~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~ 89 (118)
T d1i8lc_ 10 LASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDTGL 89 (118)
T ss_dssp ECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGGCEE
T ss_pred EEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCCCEE
Confidence 688999999999986222222 26899982 211 1 00111112334556889999999999999
Q ss_pred EEEEEEcC
Q psy2166 765 YTCRATNK 772 (805)
Q Consensus 765 Y~C~a~N~ 772 (805)
|.|.+...
T Consensus 90 YyCa~~~~ 97 (118)
T d1i8lc_ 90 YICKVELM 97 (118)
T ss_dssp EEEEEEEE
T ss_pred EEEeEecc
Confidence 99988653
|
| >d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.58 E-value=0.00017 Score=57.82 Aligned_cols=69 Identities=20% Similarity=0.316 Sum_probs=52.4
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-----------CCCceEEEec--CcEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-----------LGSRFKTTAD--FGFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-----------~~~~~~~~~~--~~~~~L~I~~~~~ 133 (805)
...+..|+++.|.|.+++..-....+.|+| .|+.+ . -.+|+.++.| .....|.|.+++.
T Consensus 8 ~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~ 87 (126)
T d1lmka1 8 TELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTS 87 (126)
T ss_dssp CEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCC
Confidence 457788999999999996544566788987 23221 1 1257888766 4677899999999
Q ss_pred CCCeEEEEEE
Q psy2166 134 RDQGIYTCRA 143 (805)
Q Consensus 134 ~D~G~Y~C~a 143 (805)
+|++.|+|..
T Consensus 88 eDTAvYYCAr 97 (126)
T d1lmka1 88 EDSAVYYCAR 97 (126)
T ss_dssp GGCEEEEEEE
T ss_pred CcceEEEEee
Confidence 9999999975
|
| >d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.58 E-value=0.00019 Score=57.59 Aligned_cols=70 Identities=17% Similarity=0.279 Sum_probs=52.6
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-----------CCCceEEEecC--cEEEEEEcccccC
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-----------LGSRFKTTADF--GFVTLDLTEVYDR 134 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-----------~~~~~~~~~~~--~~~~L~I~~~~~~ 134 (805)
..+..|+.+.|.|.+++..-....+.|+| .|+.+ . -.+|+.++.|. ....|.|.+++.+
T Consensus 10 ~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~e 89 (127)
T d2fx7h1 10 EVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPE 89 (127)
T ss_dssp EEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred ceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCcc
Confidence 46788999999999996544556789987 23221 1 13578888764 5678999999999
Q ss_pred CCeEEEEEEEe
Q psy2166 135 DQGIYTCRAWN 145 (805)
Q Consensus 135 D~G~Y~C~a~n 145 (805)
|++.|.|....
T Consensus 90 DTavYYCAR~~ 100 (127)
T d2fx7h1 90 DTAVYYCAREG 100 (127)
T ss_dssp GCEEEEEEEEE
T ss_pred cceEEEEeecc
Confidence 99999998653
|
| >d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.58 E-value=0.00021 Score=58.21 Aligned_cols=71 Identities=30% Similarity=0.360 Sum_probs=51.2
Q ss_pred ceecCCCcEEEEEEEecCC--CCCceEEEEE--CCEecC----------------CCCceEEEecC--cEEEEEEccccc
Q psy2166 76 FKLGEAQPLHLEAQVEPKN--DPNLKIEWIF--NGKPLE----------------LGSRFKTTADF--GFVTLDLTEVYD 133 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~--~p~~~v~W~k--~g~~i~----------------~~~~~~~~~~~--~~~~L~I~~~~~ 133 (805)
..|..|+.++|.|.+++.. .....+.|+| .|+.+. -.+|+.+..|. ....|.|.+++.
T Consensus 10 ~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~ 89 (132)
T d1tjgh1 10 PLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSP 89 (132)
T ss_dssp SEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred eeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCc
Confidence 4688999999999998531 2234688997 222210 13578877653 567899999999
Q ss_pred CCCeEEEEEEEeC
Q psy2166 134 RDQGIYTCRAWNL 146 (805)
Q Consensus 134 ~D~G~Y~C~a~n~ 146 (805)
+|++.|.|.....
T Consensus 90 eDtAvYYCAr~~~ 102 (132)
T d1tjgh1 90 VDTATYFCAHRRG 102 (132)
T ss_dssp GGCEEEEEEEECC
T ss_pred ccceEEEEEEecC
Confidence 9999999987543
|
| >d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.58 E-value=0.0002 Score=56.79 Aligned_cols=65 Identities=12% Similarity=0.230 Sum_probs=47.6
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEEC--CEE------ccC-----------CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLYN--GKP------IEA-----------SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~~--g~~------l~~-----------~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |... -.+.|++- |+- +.. ..|+.+..+ .....|+|.+++.
T Consensus 11 ~~kPg~sl~LsC~~S--G~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~ 88 (119)
T d1eapb1 11 LVKPGASVKISCKAS--GYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTS 88 (119)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred eECCCCCEEEEEEEc--cCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccC
Confidence 678999999999998 6544 46889871 111 111 146666554 4567899999999
Q ss_pred CCCEEEEEEE
Q psy2166 760 EDTGVYTCRA 769 (805)
Q Consensus 760 ~d~G~Y~C~a 769 (805)
+|++.|.|..
T Consensus 89 eDTAvYYCAr 98 (119)
T d1eapb1 89 EDSAVYFCKR 98 (119)
T ss_dssp GGCEEEEEEE
T ss_pred CcceEEEEEE
Confidence 9999999953
|
| >d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.58 E-value=0.00021 Score=57.51 Aligned_cols=71 Identities=17% Similarity=0.229 Sum_probs=52.9
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-----------CCCceEEEecC--cEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-----------LGSRFKTTADF--GFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-----------~~~~~~~~~~~--~~~~L~I~~~~~ 133 (805)
...+..|+++.|.|.+++..-....+.|+| .|+.+ . -.+|+.++.|. ....|.|.+++.
T Consensus 8 ~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~ 87 (130)
T d1rhhb1 8 AEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRS 87 (130)
T ss_dssp CEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCC
Confidence 346789999999999996534556789987 23211 1 12488888764 567899999999
Q ss_pred CCCeEEEEEEEe
Q psy2166 134 RDQGIYTCRAWN 145 (805)
Q Consensus 134 ~D~G~Y~C~a~n 145 (805)
+|++.|.|....
T Consensus 88 eDtAvYyCAr~~ 99 (130)
T d1rhhb1 88 DDTAVYYCARDF 99 (130)
T ss_dssp GGCEEEEEEEEC
T ss_pred CCcEEEEEEeec
Confidence 999999997654
|
| >d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.57 E-value=0.00015 Score=58.33 Aligned_cols=71 Identities=14% Similarity=0.205 Sum_probs=51.8
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-----------CCCceEEEecC--cEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-----------LGSRFKTTADF--GFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-----------~~~~~~~~~~~--~~~~L~I~~~~~ 133 (805)
...+..|++++|.|.+++..-....+.|++ .|+.+ . ..+|+.++.|. ....|.|.+++.
T Consensus 9 ~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~ 88 (125)
T d1rihh1 9 NELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTS 88 (125)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCc
Confidence 356788999999999995433345688987 23221 1 12477777764 567899999999
Q ss_pred CCCeEEEEEEEe
Q psy2166 134 RDQGIYTCRAWN 145 (805)
Q Consensus 134 ~D~G~Y~C~a~n 145 (805)
+|++.|.|....
T Consensus 89 eDtAvYYCAR~~ 100 (125)
T d1rihh1 89 EDSAVYYCARES 100 (125)
T ss_dssp GGCEEEEEEEEC
T ss_pred ccceEEEEeeeC
Confidence 999999998643
|
| >d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.57 E-value=0.0002 Score=56.61 Aligned_cols=70 Identities=17% Similarity=0.290 Sum_probs=50.6
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEEC--CE------Ecc---------C--CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLYN--GK------PIE---------A--SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~~--g~------~l~---------~--~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |... -.+.|+|- |+ .+. + ..|+.+..| .....|+|++++.
T Consensus 11 ~vkpg~sl~LsC~~S--G~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~ 88 (118)
T d2fbjh1 11 LVQPGGSLKLSCAAS--GFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS 88 (118)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred eECCCCCEEEEEEEC--CccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCC
Confidence 689999999999998 6544 46889871 11 011 1 146666554 4567899999999
Q ss_pred CCCEEEEEEEEcCCc
Q psy2166 760 EDTGVYTCRATNKWG 774 (805)
Q Consensus 760 ~d~G~Y~C~a~N~~G 774 (805)
+|++.|.|......|
T Consensus 89 eDtAvYYCAr~~~~~ 103 (118)
T d2fbjh1 89 EDTALYYCARLHYYG 103 (118)
T ss_dssp GGCEEEEEEEEETTT
T ss_pred CcceEEEeeEecCCC
Confidence 999999998766544
|
| >d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.57 E-value=0.00014 Score=57.97 Aligned_cols=70 Identities=19% Similarity=0.315 Sum_probs=51.7
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-------------CCCceEEEecC--cEEEEEEcccc
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-------------LGSRFKTTADF--GFVTLDLTEVY 132 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-------------~~~~~~~~~~~--~~~~L~I~~~~ 132 (805)
..|..|++++|.|.+++.......+.|+| .|+.+ . -.+|+.++.|. ....|.|.+++
T Consensus 10 ~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~ 89 (122)
T d1q9rb1 10 GLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLR 89 (122)
T ss_dssp CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred ceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeec
Confidence 47888999999999995433445688997 23221 1 12478887763 56789999999
Q ss_pred cCCCeEEEEEEEe
Q psy2166 133 DRDQGIYTCRAWN 145 (805)
Q Consensus 133 ~~D~G~Y~C~a~n 145 (805)
.+|++.|.|....
T Consensus 90 ~eDTAvYYCar~~ 102 (122)
T d1q9rb1 90 AEDSATYYCARDH 102 (122)
T ss_dssp GGGCEEEEEEECC
T ss_pred cCcceEEEEEecC
Confidence 9999999998643
|
| >d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.57 E-value=0.00029 Score=56.03 Aligned_cols=67 Identities=13% Similarity=0.163 Sum_probs=49.7
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEEC----CE-------------EccC--CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLYN----GK-------------PIEA--SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~~----g~-------------~l~~--~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |... -.+.|++- |- ...+ .+|+.+..+ .....|+|++++.
T Consensus 12 ~vkpg~sl~LsC~~S--G~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~ 89 (122)
T d1vgeh1 12 VKKPGASVKVSCKAS--GYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRP 89 (122)
T ss_dssp EECTTCCEEEEEEEC--SSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred EECCCCCEEEEEEEc--CCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCC
Confidence 689999999999998 6544 46889881 11 1111 256766655 4577899999999
Q ss_pred CCCEEEEEEEEc
Q psy2166 760 EDTGVYTCRATN 771 (805)
Q Consensus 760 ~d~G~Y~C~a~N 771 (805)
+|++.|.|....
T Consensus 90 eDtA~YYCAr~~ 101 (122)
T d1vgeh1 90 EDTAVYYCARDP 101 (122)
T ss_dssp GGCEEEEEEEET
T ss_pred CcceEEEEeecC
Confidence 999999997653
|
| >d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.56 E-value=4e-05 Score=62.22 Aligned_cols=65 Identities=20% Similarity=0.289 Sum_probs=45.1
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC--CE---Ec-------------cCCCCeEEEe-eCcEEEEEEcCCCCCCCE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--GK---PI-------------EASHRIRTVH-AFGMVVLEILGTKIEDTG 763 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g~---~l-------------~~~~~~~~~~-~~~~~~L~i~~v~~~d~G 763 (805)
.+.+|++++|.|... .....+.|||- |+ .+ ....++.... ....+.|+|.++..+|+|
T Consensus 10 ~~~~G~svtl~C~~~---~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa 86 (112)
T d1kgce1 10 VAKRGQDVALRCDPI---SGHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQEDSA 86 (112)
T ss_dssp EEETTCCEEEEEECC---TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGGCE
T ss_pred EECCCCCEEEEEEEC---CCCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCCCE
Confidence 789999999999864 23457999981 11 10 0123333322 223578999999999999
Q ss_pred EEEEEEE
Q psy2166 764 VYTCRAT 770 (805)
Q Consensus 764 ~Y~C~a~ 770 (805)
.|.|.+.
T Consensus 87 ~YyCa~~ 93 (112)
T d1kgce1 87 VYLCASS 93 (112)
T ss_dssp EEEEEEE
T ss_pred EEEEeee
Confidence 9999875
|
| >d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.56 E-value=0.00015 Score=57.52 Aligned_cols=65 Identities=14% Similarity=0.261 Sum_probs=47.2
Q ss_pred ccCCCCeEEEEEEEeecCC--CCeEEEEEEC--CE---------------EccC--CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGD--QTMTVEFLYN--GK---------------PIEA--SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~--p~~~v~W~~~--g~---------------~l~~--~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|.|.+. |. ..-.+.|++- |+ ...+ .+|+.+..+ .....|+|++++.
T Consensus 11 ~~kPG~sl~LsC~~S--G~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~ 88 (115)
T d1f3dh1 11 LVKPGASVKVSCKAS--GYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTF 88 (115)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred EECCCCCEEEEEEEc--cccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCc
Confidence 588999999999998 54 3446889871 11 1111 146666554 4567899999999
Q ss_pred CCCEEEEEEE
Q psy2166 760 EDTGVYTCRA 769 (805)
Q Consensus 760 ~d~G~Y~C~a 769 (805)
+|++.|.|..
T Consensus 89 eDtAvYYCAr 98 (115)
T d1f3dh1 89 EDSAVYYCAN 98 (115)
T ss_dssp GGCEEEEEEE
T ss_pred CCcEEEEEec
Confidence 9999999953
|
| >d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.56 E-value=0.00019 Score=57.69 Aligned_cols=70 Identities=17% Similarity=0.351 Sum_probs=52.1
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-----------CCCceEEEecC--cEEEEEEcccccC
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-----------LGSRFKTTADF--GFVTLDLTEVYDR 134 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-----------~~~~~~~~~~~--~~~~L~I~~~~~~ 134 (805)
..+..|+.+.|.|.+++..-....+.|+| .|+.+ . ..+|+.++.|. ....|.|.+++.+
T Consensus 10 ~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~e 89 (135)
T d1ieha_ 10 GLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSE 89 (135)
T ss_dssp CEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSS
T ss_pred ceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCcc
Confidence 46789999999999996534456789987 23211 1 12478888764 4568999999999
Q ss_pred CCeEEEEEEEe
Q psy2166 135 DQGIYTCRAWN 145 (805)
Q Consensus 135 D~G~Y~C~a~n 145 (805)
|++.|+|....
T Consensus 90 DTAvYYCAr~~ 100 (135)
T d1ieha_ 90 DTAVYYCAKYS 100 (135)
T ss_dssp SCEEEEEEEBS
T ss_pred cceeeEEEEec
Confidence 99999997643
|
| >d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=97.56 E-value=0.00016 Score=57.96 Aligned_cols=70 Identities=17% Similarity=0.302 Sum_probs=51.8
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEE--CCEe------cC-----------CCCceEEEecC--cEEEEEEcccccC
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKP------LE-----------LGSRFKTTADF--GFVTLDLTEVYDR 134 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~------i~-----------~~~~~~~~~~~--~~~~L~I~~~~~~ 134 (805)
..+..|++++|.|.+++..-....+.|+| .|+. |. ..+|+.++.|. ....|.|.+++.+
T Consensus 10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~e 89 (126)
T d1dfbh1 10 GLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAE 89 (126)
T ss_dssp EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred ceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccC
Confidence 46789999999999995433455688987 2321 11 12477887764 5678999999999
Q ss_pred CCeEEEEEEEe
Q psy2166 135 DQGIYTCRAWN 145 (805)
Q Consensus 135 D~G~Y~C~a~n 145 (805)
|++.|.|....
T Consensus 90 DtavYYCAr~~ 100 (126)
T d1dfbh1 90 DMALYYCVKGR 100 (126)
T ss_dssp GCEEEEEEEEE
T ss_pred cceEEEEEecc
Confidence 99999997643
|
| >d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.55 E-value=0.0003 Score=56.40 Aligned_cols=68 Identities=19% Similarity=0.259 Sum_probs=48.6
Q ss_pred ccCCCCeEEEEEEEeecCC----CCeEEEEEEC--CEE--------------ccC--CCCeEEEee--CcEEEEEEcCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGD----QTMTVEFLYN--GKP--------------IEA--SHRIRTVHA--FGMVVLEILGTK 758 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~----p~~~v~W~~~--g~~--------------l~~--~~~~~~~~~--~~~~~L~i~~v~ 758 (805)
.+++|++++|.|.+. |. +...+.|+|- |+. ..+ ..|+.+..+ .....|+|.+++
T Consensus 11 ~v~PG~sv~LsC~~S--G~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~ 88 (120)
T d2agjh1 11 LVKPTQTLTLTCTFS--GFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLD 88 (120)
T ss_dssp BCCSSSEEEEEEEEE--SCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCC
T ss_pred eECCCCCEEEEEEEc--ccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeee
Confidence 688999999999997 53 3357889972 211 011 246666544 346889999999
Q ss_pred CCCCEEEEEEEEcC
Q psy2166 759 IEDTGVYTCRATNK 772 (805)
Q Consensus 759 ~~d~G~Y~C~a~N~ 772 (805)
.+|++.|.|.....
T Consensus 89 ~eDsAvYyCAr~~~ 102 (120)
T d2agjh1 89 PVDTATYYCARTSG 102 (120)
T ss_dssp GGGCEEEEEEEECS
T ss_pred eccceEEeeEecCC
Confidence 99999999975543
|
| >d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=0.00013 Score=58.44 Aligned_cols=85 Identities=19% Similarity=0.159 Sum_probs=54.9
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEE---e-eCC---EEEEEEccCCCCCC
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTF---H-DFG---IVILDILYCYEENS 566 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~---~-~~~---~~~L~i~~v~~~d~ 566 (805)
.+|.+.+.++..... .++.++|.|.+.++......|+|++||..+......... . ++. .+.|.|..-.....
T Consensus 4 ~~P~V~l~~Ps~~~~-~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~ 82 (107)
T d1c5cl2 4 AAPSVFIFPPSDEQL-KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKH 82 (107)
T ss_dssp BCCEEEEECCCHHHH-HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTC
T ss_pred cCCEEEEECCCHHHh-cCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCC
Confidence 467777655544323 467899999999875556899999999987644222111 1 122 34577765433444
Q ss_pred EEEEEEEEcCCcc
Q psy2166 567 GVYECRATNKYGS 579 (805)
Q Consensus 567 G~Y~C~a~n~~g~ 579 (805)
..|+|.+.+....
T Consensus 83 ~~ytC~V~H~~~~ 95 (107)
T d1c5cl2 83 KVYACEVTHQGLS 95 (107)
T ss_dssp CEEEEEEECTTCS
T ss_pred CEEEEEEEECCCC
Confidence 5899999986544
|
| >d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.55 E-value=0.00016 Score=57.94 Aligned_cols=69 Identities=19% Similarity=0.322 Sum_probs=51.3
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEe------cC-----------CCCceEEEecC--cEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKP------LE-----------LGSRFKTTADF--GFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~------i~-----------~~~~~~~~~~~--~~~~L~I~~~~~ 133 (805)
...+..|+++.|.|.+++..-....+.|+| .|+. |. ..+|+.++.|. ....|.|.+++.
T Consensus 9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~ 88 (127)
T d1n0xh1 9 AEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRS 88 (127)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCC
Confidence 457889999999999996434445689987 2322 11 12477888763 567899999999
Q ss_pred CCCeEEEEEE
Q psy2166 134 RDQGIYTCRA 143 (805)
Q Consensus 134 ~D~G~Y~C~a 143 (805)
+|++.|.|..
T Consensus 89 eDtAvYYCAR 98 (127)
T d1n0xh1 89 ADTAVYYCAR 98 (127)
T ss_dssp GGCEEEEEEE
T ss_pred CCceEEEEEe
Confidence 9999999964
|
| >d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=97.54 E-value=0.00017 Score=57.83 Aligned_cols=69 Identities=28% Similarity=0.421 Sum_probs=49.2
Q ss_pred ceecCCCcEEEEEEEecCC--CCCceEEEEE--CCEecC----------------CCCceEEEecC--cEEEEEEccccc
Q psy2166 76 FKLGEAQPLHLEAQVEPKN--DPNLKIEWIF--NGKPLE----------------LGSRFKTTADF--GFVTLDLTEVYD 133 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~--~p~~~v~W~k--~g~~i~----------------~~~~~~~~~~~--~~~~L~I~~~~~ 133 (805)
..|..|++++|.|.+.+.. .....+.|+| .|+.+. ..+|+.++.|. ....|+|.+++.
T Consensus 10 ~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~ 89 (123)
T d1r0ah1 10 GIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVET 89 (123)
T ss_dssp SEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCG
T ss_pred ceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeeccc
Confidence 4678899999999998542 2334578987 232211 12477777653 467899999999
Q ss_pred CCCeEEEEEEE
Q psy2166 134 RDQGIYTCRAW 144 (805)
Q Consensus 134 ~D~G~Y~C~a~ 144 (805)
+|++.|.|...
T Consensus 90 eDsAvYyCAr~ 100 (123)
T d1r0ah1 90 ADTAIYYCAQS 100 (123)
T ss_dssp GGCEEEEEEEE
T ss_pred ccceEEeeccc
Confidence 99999999753
|
| >d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC homolog, alpha-3 domain species: Human (Homo sapiens), Mic-a [TaxId: 9606]
Probab=97.54 E-value=0.00013 Score=56.59 Aligned_cols=80 Identities=10% Similarity=0.115 Sum_probs=49.8
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceE--EE-e-eCCEEEEEEccCCCCCCEEE
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR--TF-H-DFGIVILDILYCYEENSGVY 569 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~--~~-~-~~~~~~L~i~~v~~~d~G~Y 569 (805)
.||.+.+..+. ..+..++|.|.+.++-++...++|++||+.+..+.... .. . ++.........+..+|...|
T Consensus 2 vpP~V~v~~~~----~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~y 77 (94)
T d1hyrc1 2 VPPMVNVTRSE----ASEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRF 77 (94)
T ss_dssp BCCEEEEEECC----CSSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGE
T ss_pred cCCEEEEEecC----CCCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEE
Confidence 35666653322 23567899999998877889999999999986543221 11 1 22222222222334555579
Q ss_pred EEEEEcCC
Q psy2166 570 ECRATNKY 577 (805)
Q Consensus 570 ~C~a~n~~ 577 (805)
+|.+.+..
T Consensus 78 tC~V~H~~ 85 (94)
T d1hyrc1 78 TCYMEHSG 85 (94)
T ss_dssp EEEEEETT
T ss_pred EEEEEECC
Confidence 99998753
|
| >d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=5.3e-05 Score=60.20 Aligned_cols=83 Identities=16% Similarity=0.163 Sum_probs=52.6
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCC--ceEEEeeCC---EEEEEEccCCCCCCEE
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGH--RYRTFHDFG---IVILDILYCYEENSGV 568 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~--~~~~~~~~~---~~~L~i~~v~~~d~G~ 568 (805)
..|.+.+..+..... .++.++|.|.+.++......|+|++||+...... ......++. .+.|.|..-.....-.
T Consensus 3 ~~P~V~i~~ps~~~~-~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ 81 (102)
T d1l6xa2 3 REPQVYTLPPSRDEL-TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNV 81 (102)
T ss_dssp BCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCC
T ss_pred cCCEEEEECcCHHHh-cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCE
Confidence 356665544443323 5788999999998766678999999999865321 111112222 3347776433334457
Q ss_pred EEEEEEcCC
Q psy2166 569 YECRATNKY 577 (805)
Q Consensus 569 Y~C~a~n~~ 577 (805)
|+|++.+..
T Consensus 82 ytC~V~H~~ 90 (102)
T d1l6xa2 82 FSCSVMHEA 90 (102)
T ss_dssp EEEEEECTT
T ss_pred EEEEEEeCC
Confidence 999999864
|
| >d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.54 E-value=0.00015 Score=57.97 Aligned_cols=70 Identities=19% Similarity=0.273 Sum_probs=51.0
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-----------CCCceEEEecC--cEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-----------LGSRFKTTADF--GFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-----------~~~~~~~~~~~--~~~~L~I~~~~~ 133 (805)
...+..|+++.|.|.+++..-....+.|+| .|+.+ . -.+|+.++.|. ....|.|.+++.
T Consensus 9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~ 88 (124)
T d2b1hh1 9 AEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKP 88 (124)
T ss_dssp CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCG
T ss_pred CceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeecccc
Confidence 456789999999999995433344688987 22111 1 13588888764 567899999999
Q ss_pred CCCeEEEEEEE
Q psy2166 134 RDQGIYTCRAW 144 (805)
Q Consensus 134 ~D~G~Y~C~a~ 144 (805)
+|++.|.|...
T Consensus 89 eDTA~YYCAR~ 99 (124)
T d2b1hh1 89 SDTALYYCARL 99 (124)
T ss_dssp GGCEEEEEEEE
T ss_pred ccceEEEEeec
Confidence 99999999643
|
| >d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: N-terminal domain of sialoadhesin species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.54 E-value=6.4e-05 Score=61.85 Aligned_cols=74 Identities=15% Similarity=0.118 Sum_probs=48.7
Q ss_pred CCcccccCCCCeEEEEEEEeecC-CC---CeEEEEEECC----EEc-----------cCCCCeEEEee--CcEEEEEEcC
Q psy2166 698 FQHLSNLSEGEIAHFEASLIPVG-DQ---TMTVEFLYNG----KPI-----------EASHRIRTVHA--FGMVVLEILG 756 (805)
Q Consensus 698 ~~~~~~v~~G~~~~l~C~~~~~g-~p---~~~v~W~~~g----~~l-----------~~~~~~~~~~~--~~~~~L~i~~ 756 (805)
|.++ .+.+|+.|+|.|...... .+ ...+.|++.+ ..+ ....|+.+..+ .+.++|+|.+
T Consensus 7 P~~v-~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~ 85 (118)
T d1qfoa_ 7 PKNV-QGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD 85 (118)
T ss_dssp CSEE-EEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred CCEE-EEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence 3444 899999999999986111 11 1356677732 111 11245554332 3567899999
Q ss_pred CCCCCCEEEEEEEEcC
Q psy2166 757 TKIEDTGVYTCRATNK 772 (805)
Q Consensus 757 v~~~d~G~Y~C~a~N~ 772 (805)
++.+|+|.|.|.+...
T Consensus 86 v~~~DsG~Y~C~v~~~ 101 (118)
T d1qfoa_ 86 LKPEDSGTYNFRFEIS 101 (118)
T ss_dssp CCGGGCEEEEEEEECC
T ss_pred CChhHCEEEEEEEEeC
Confidence 9999999999999754
|
| >d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.54 E-value=0.00014 Score=58.82 Aligned_cols=70 Identities=23% Similarity=0.369 Sum_probs=51.3
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEEC--CEe---c--------C-----------CCCceEEEec--CcEEEEEEc
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKP---L--------E-----------LGSRFKTTAD--FGFVTLDLT 129 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~---i--------~-----------~~~~~~~~~~--~~~~~L~I~ 129 (805)
-.+..|++++|.|.+++..-....+.|+|- |+. + . ..+|+.++.| .....|+|.
T Consensus 10 ~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~ 89 (127)
T d1i3ua_ 10 GLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMN 89 (127)
T ss_dssp EECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEEC
T ss_pred ceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeee
Confidence 467889999999999954334557889972 211 1 0 1147877765 357789999
Q ss_pred ccccCCCeEEEEEEEe
Q psy2166 130 EVYDRDQGIYTCRAWN 145 (805)
Q Consensus 130 ~~~~~D~G~Y~C~a~n 145 (805)
+++.+|++.|.|....
T Consensus 90 ~l~~eDtAvYYCAr~~ 105 (127)
T d1i3ua_ 90 SLKPEDTAVYYCAAKT 105 (127)
T ss_dssp SCCGGGCEEEEEEEES
T ss_pred cccccceeEEEEEEEe
Confidence 9999999999998753
|
| >d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: I set domains domain: Cervical EMMPRIN species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=0.00029 Score=50.06 Aligned_cols=60 Identities=13% Similarity=0.117 Sum_probs=45.9
Q ss_pred ccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEE
Q psy2166 508 LKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRAT 574 (805)
Q Consensus 508 v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 574 (805)
...|..+.|+|.......+.---.|.|+|+.|..+... +....+.|.. .+|+|.|.|...
T Consensus 9 ~~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~-----~~~tey~V~~--~D~SGeY~CVFl 68 (80)
T d3b5ha2 9 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP-----GQKTEFKVDS--DDQWGEYSCVFL 68 (80)
T ss_dssp EEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC-----CSEEEEEECG--GGCCEEEEEEEE
T ss_pred ccCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCC-----CCceEEEEec--CCCCceEEEEEc
Confidence 35688899999999766666678999999999865322 2344577764 789999999975
|
| >d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.53 E-value=6.2e-05 Score=59.55 Aligned_cols=82 Identities=17% Similarity=0.200 Sum_probs=52.2
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCC--ceEEEeeCC---EEEEEEccCCCCCCEEE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGH--RYRTFHDFG---IVILDILYCYEENSGVY 569 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~--~~~~~~~~~---~~~L~i~~v~~~d~G~Y 569 (805)
+|.+.+..+... ....+.++|.|.+.++-.....|+|++||.++.... ......++. .+.|.|..-.......|
T Consensus 3 ~P~V~i~~ps~~-~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~y 81 (101)
T d1cqka_ 3 APQVYTIPPPLE-QMAKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTF 81 (101)
T ss_dssp CCEEEEECCCGG-GTTSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCE
T ss_pred CCEEEEECCCHH-HHCCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEE
Confidence 455555444333 235678999999998766688999999999875321 111122232 34566664333446689
Q ss_pred EEEEEcCC
Q psy2166 570 ECRATNKY 577 (805)
Q Consensus 570 ~C~a~n~~ 577 (805)
+|++.+..
T Consensus 82 tC~V~H~~ 89 (101)
T d1cqka_ 82 TCSVLHEG 89 (101)
T ss_dssp EEEEECTT
T ss_pred EEEEEECC
Confidence 99999863
|
| >d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.52 E-value=5.6e-05 Score=61.57 Aligned_cols=67 Identities=12% Similarity=0.170 Sum_probs=45.4
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC--CE---Ec------------cCCCCeEEE-eeCcEEEEEEcCCCCCCCEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--GK---PI------------EASHRIRTV-HAFGMVVLEILGTKIEDTGV 764 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g~---~l------------~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~ 764 (805)
.+.+|++++|.|... .....+.||+- |+ .+ ....++... .....+.|+|.++..+|+|.
T Consensus 10 ~~~~G~svtl~C~~s---~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DSa~ 86 (114)
T d1ogae1 10 FRKEGQNVTLSCEQN---LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAF 86 (114)
T ss_dssp EEETTCCEEECCEEC---SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEE
T ss_pred EEcCCCCEEEEEEEe---cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCcee
Confidence 789999999999985 23458999981 11 00 011122221 22334679999999999999
Q ss_pred EEEEEEcC
Q psy2166 765 YTCRATNK 772 (805)
Q Consensus 765 Y~C~a~N~ 772 (805)
|.|.+...
T Consensus 87 YyCa~~~~ 94 (114)
T d1ogae1 87 YLCASSSR 94 (114)
T ss_dssp EEEEEESS
T ss_pred EEEeeccC
Confidence 99987654
|
| >d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.51 E-value=0.00023 Score=56.23 Aligned_cols=69 Identities=16% Similarity=0.283 Sum_probs=50.1
Q ss_pred ccCCCCeEEEEEEEeecCCC--CeEEEEEE--CCEE------cc-----------CCCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQ--TMTVEFLY--NGKP------IE-----------ASHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p--~~~v~W~~--~g~~------l~-----------~~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |.. .-.+.|++ -|+. +. -..|+.+..| .....|+|++++.
T Consensus 11 ~~kPg~sv~LsC~~S--G~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~ 88 (117)
T d1iqdb1 11 VKKPGASVKVSCKVS--GYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRS 88 (117)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred eECCCCCEEEEEEEc--CCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCc
Confidence 689999999999998 653 34688987 1111 11 1256666654 4567899999999
Q ss_pred CCCEEEEEEEEcCC
Q psy2166 760 EDTGVYTCRATNKW 773 (805)
Q Consensus 760 ~d~G~Y~C~a~N~~ 773 (805)
+|++.|.|...+..
T Consensus 89 eDtAvYYCA~~~~~ 102 (117)
T d1iqdb1 89 DDTAVYYCAVPDPD 102 (117)
T ss_dssp GGCEEEEEEECSSS
T ss_pred CcceEEEEeEcCCC
Confidence 99999999876543
|
| >d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=97.51 E-value=0.00026 Score=56.68 Aligned_cols=68 Identities=16% Similarity=0.265 Sum_probs=49.8
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEEC--CE--E----c---------cC--CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLYN--GK--P----I---------EA--SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~~--g~--~----l---------~~--~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |... -.+.|++- |+ + + .+ ..|+.+..| .....|+|.+++.
T Consensus 11 ~vkPg~sl~LsC~~S--G~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~ 88 (126)
T d1dfbh1 11 LVQPGRSLRLSCAAS--GFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRA 88 (126)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred eECCCCCeEEEEEEC--CccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeecc
Confidence 589999999999998 6544 46889871 11 0 1 11 246666665 4568899999999
Q ss_pred CCCEEEEEEEEcC
Q psy2166 760 EDTGVYTCRATNK 772 (805)
Q Consensus 760 ~d~G~Y~C~a~N~ 772 (805)
+|++.|.|.....
T Consensus 89 eDtavYYCAr~~~ 101 (126)
T d1dfbh1 89 EDMALYYCVKGRD 101 (126)
T ss_dssp GGCEEEEEEEEEC
T ss_pred CcceEEEEEeccC
Confidence 9999999986543
|
| >d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.51 E-value=0.00022 Score=55.92 Aligned_cols=65 Identities=17% Similarity=0.252 Sum_probs=47.8
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEEC--CE------Ecc-C----------CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLYN--GK------PIE-A----------SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~~--g~------~l~-~----------~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |... -.+.|++- |+ .+. . ..|+.+..+ .....|+|++++.
T Consensus 11 ~vkpG~sl~LsC~~S--G~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~ 88 (114)
T d1indh1 11 SVKPGGSLKLSCAAS--GFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRS 88 (114)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred eECCCCCEEEEEEEC--ccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeecc
Confidence 689999999999998 6543 46889871 11 011 1 146666655 4567899999999
Q ss_pred CCCEEEEEEE
Q psy2166 760 EDTGVYTCRA 769 (805)
Q Consensus 760 ~d~G~Y~C~a 769 (805)
+|++.|.|..
T Consensus 89 eDtAvYYCA~ 98 (114)
T d1indh1 89 EDTALYFCAS 98 (114)
T ss_dssp GGCEEEEEEC
T ss_pred CcccEEEECC
Confidence 9999999963
|
| >d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.51 E-value=6.4e-05 Score=59.68 Aligned_cols=83 Identities=13% Similarity=0.158 Sum_probs=52.9
Q ss_pred CCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCC--ceEEEeeCC---EEEEEEccCCCCCCEEE
Q psy2166 495 APKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGH--RYRTFHDFG---IVILDILYCYEENSGVY 569 (805)
Q Consensus 495 ~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~--~~~~~~~~~---~~~L~i~~v~~~d~G~Y 569 (805)
+|.+.+..+..... ..+.++|.|.+.++-.....|+|++||+++.... ......++. .+.|.|..-...+...|
T Consensus 4 ~P~V~i~~p~~~~~-~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~y 82 (102)
T d1i1ca2 4 GPQVYTMAPPKEEM-TQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTF 82 (102)
T ss_dssp CCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCE
T ss_pred CCEEEEECCCHHHh-cCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEE
Confidence 46666554443323 3578999999998767778999999999875321 111112232 33467765444455689
Q ss_pred EEEEEcCCc
Q psy2166 570 ECRATNKYG 578 (805)
Q Consensus 570 ~C~a~n~~g 578 (805)
+|.|.+..-
T Consensus 83 tC~V~H~~~ 91 (102)
T d1i1ca2 83 TCSVLHEGL 91 (102)
T ss_dssp EEEEECTTS
T ss_pred EEEEEeCCC
Confidence 999998643
|
| >d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]
Probab=97.50 E-value=0.00023 Score=56.08 Aligned_cols=69 Identities=14% Similarity=0.228 Sum_probs=49.0
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC--CE--------------EccC--CCCeEEEee--CcEEEEEEcCCCCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--GK--------------PIEA--SHRIRTVHA--FGMVVLEILGTKIEDT 762 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g~--------------~l~~--~~~~~~~~~--~~~~~L~i~~v~~~d~ 762 (805)
.+++|++++|+|.+.++..-.-.+.|++. |+ ...+ ..|+.+..| .....|+|++++.+|+
T Consensus 11 ~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eDT 90 (116)
T d1a2yb_ 11 LVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDT 90 (116)
T ss_dssp EECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred eECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeeccc
Confidence 68999999999999832223357889882 11 1111 135666543 4568899999999999
Q ss_pred EEEEEEEEc
Q psy2166 763 GVYTCRATN 771 (805)
Q Consensus 763 G~Y~C~a~N 771 (805)
+.|.|.-..
T Consensus 91 AvYYCAr~~ 99 (116)
T d1a2yb_ 91 ARYYCARER 99 (116)
T ss_dssp EEEEEEEES
T ss_pred eEEEEEEeC
Confidence 999998654
|
| >d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.50 E-value=0.00031 Score=56.35 Aligned_cols=68 Identities=18% Similarity=0.248 Sum_probs=50.7
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEE----------------CCE-EccC--CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLY----------------NGK-PIEA--SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~----------------~g~-~l~~--~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |... -.+.|++ ++. ...+ .+|+.+..+ .....|+|++++.
T Consensus 11 ~~kpg~sl~LsC~~S--G~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~ 88 (128)
T d2nxyd1 11 VKKPGSSVKVSCKAS--GDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRS 88 (128)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred eECCCCCEEEEEEEc--CCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccc
Confidence 689999999999999 6544 4678877 111 1112 257777666 5678899999999
Q ss_pred CCCEEEEEEEEcC
Q psy2166 760 EDTGVYTCRATNK 772 (805)
Q Consensus 760 ~d~G~Y~C~a~N~ 772 (805)
+|++.|.|.....
T Consensus 89 eDTA~YYCAr~~~ 101 (128)
T d2nxyd1 89 DDTAVYFCAGVYE 101 (128)
T ss_dssp GGCEEEEEEEEEC
T ss_pred cCceEEEEeEEec
Confidence 9999999997543
|
| >d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]
Probab=97.50 E-value=0.00075 Score=53.20 Aligned_cols=70 Identities=13% Similarity=0.181 Sum_probs=49.7
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC--CE--------------EccC--CCCeEEEee--CcEEEEEEcCCCCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--GK--------------PIEA--SHRIRTVHA--FGMVVLEILGTKIEDT 762 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g~--------------~l~~--~~~~~~~~~--~~~~~L~i~~v~~~d~ 762 (805)
.+++|++++|+|.+.++..-.-.+.|++- |+ ...+ ..|+.+..+ .....|+|++++.+|+
T Consensus 11 ~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eDt 90 (118)
T d1lo4h1 11 LVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSEDT 90 (118)
T ss_dssp EECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGGC
T ss_pred eECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCcc
Confidence 68999999999999933334457889881 11 1111 146666655 4567899999999999
Q ss_pred EEEEEEEEcC
Q psy2166 763 GVYTCRATNK 772 (805)
Q Consensus 763 G~Y~C~a~N~ 772 (805)
+.|.|...-.
T Consensus 91 A~YyCAr~~~ 100 (118)
T d1lo4h1 91 AIYYCARGTS 100 (118)
T ss_dssp EEEEEEEEET
T ss_pred eEEEecccCC
Confidence 9999975433
|
| >d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.50 E-value=0.00025 Score=55.05 Aligned_cols=67 Identities=13% Similarity=0.256 Sum_probs=43.3
Q ss_pred CCCeEEEEEEEeecCCCC--eEEEEEE--CCEEc------c---------C--CCCeEEEee--CcEEEEEEcCCCCCCC
Q psy2166 706 EGEIAHFEASLIPVGDQT--MTVEFLY--NGKPI------E---------A--SHRIRTVHA--FGMVVLEILGTKIEDT 762 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p~--~~v~W~~--~g~~l------~---------~--~~~~~~~~~--~~~~~L~i~~v~~~d~ 762 (805)
+|++++|+|.+. |... -.+.|+| -|+.+ . + ..|+.+..+ .....|+|++++.+|+
T Consensus 1 PG~sl~LsC~~S--G~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDT 78 (103)
T d1oari_ 1 PGASVKLSCKAS--GYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDS 78 (103)
T ss_dssp CCCCEEEEEECC--SSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CC
T ss_pred CCCCeEEEEEEE--CCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeecccccc
Confidence 589999999998 6543 4788987 22211 1 1 256766554 4567899999999999
Q ss_pred EEEEEEEEcCCc
Q psy2166 763 GVYTCRATNKWG 774 (805)
Q Consensus 763 G~Y~C~a~N~~G 774 (805)
+.|.|......|
T Consensus 79 AvYYCAr~~~~~ 90 (103)
T d1oari_ 79 AVYYCARMWYYG 90 (103)
T ss_dssp SEEEEEEEECSS
T ss_pred EEEEeEEECCCC
Confidence 999998655444
|
| >d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.49 E-value=0.00035 Score=55.19 Aligned_cols=65 Identities=12% Similarity=0.183 Sum_probs=48.2
Q ss_pred ccCCCCeEEEEEEEeecCCCCe--EEEEEE--CCE---------------EccC--CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTM--TVEFLY--NGK---------------PIEA--SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~--~v~W~~--~g~---------------~l~~--~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |...- .+.|+| -|+ ...+ ..|+.+..| .+...|+|++++.
T Consensus 11 ~~kpg~sl~lsC~~S--G~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~ 88 (118)
T d2jelh1 11 LVRPGVSVKISCKGS--GYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTS 88 (118)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCG
T ss_pred eECCCCCEEEEEEEc--CCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccccccc
Confidence 689999999999998 76553 788988 111 1111 146666654 4567899999999
Q ss_pred CCCEEEEEEE
Q psy2166 760 EDTGVYTCRA 769 (805)
Q Consensus 760 ~d~G~Y~C~a 769 (805)
+|++.|.|..
T Consensus 89 eDTAvYYCAr 98 (118)
T d2jelh1 89 EDSAIYYCAR 98 (118)
T ss_dssp GGCEEEEEEE
T ss_pred CcceeeeEEE
Confidence 9999999953
|
| >d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.49 E-value=0.0003 Score=55.58 Aligned_cols=65 Identities=14% Similarity=0.218 Sum_probs=47.3
Q ss_pred ccCCCCeEEEEEEEeecCCC--CeEEEEEE--CCE---------------EccC--CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQ--TMTVEFLY--NGK---------------PIEA--SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p--~~~v~W~~--~g~---------------~l~~--~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |.- .-.+.|++ -|+ ...+ ..|+.+..+ .....|+|++++.
T Consensus 11 ~~kPG~sl~LsC~~S--G~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~ 88 (117)
T d1mfah1 11 VARPGASVKMSCKAS--GYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTS 88 (117)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred eECCCCCEEEEEEEc--ccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCC
Confidence 689999999999998 543 34678887 111 1111 236666555 4567899999999
Q ss_pred CCCEEEEEEE
Q psy2166 760 EDTGVYTCRA 769 (805)
Q Consensus 760 ~d~G~Y~C~a 769 (805)
+|++.|.|..
T Consensus 89 eDtAvYYCAr 98 (117)
T d1mfah1 89 EDSAVYYCTR 98 (117)
T ss_dssp GGCEEEEEEE
T ss_pred CcceEEEEec
Confidence 9999999964
|
| >d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.49 E-value=0.00023 Score=56.54 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=48.6
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEEC--C--------------E-EccC--CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLYN--G--------------K-PIEA--SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~~--g--------------~-~l~~--~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |... -.+.|++- | . ...+ ..|+.+..| .....|+|.+++.
T Consensus 11 ~~kpg~sl~LsC~~S--G~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~ 88 (119)
T d1rz7h1 11 VKKPGATVKISCKAS--GYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRS 88 (119)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred eECCCCCEEEEEEEc--CCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCc
Confidence 679999999999999 6543 46889871 1 1 1111 147776654 4578899999999
Q ss_pred CCCEEEEEEEE
Q psy2166 760 EDTGVYTCRAT 770 (805)
Q Consensus 760 ~d~G~Y~C~a~ 770 (805)
+|++.|.|...
T Consensus 89 eDTAvYYCAr~ 99 (119)
T d1rz7h1 89 EDTAVYYCAAD 99 (119)
T ss_dssp GGCEEEEEEEC
T ss_pred ccceEEEEeec
Confidence 99999999754
|
| >d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.48 E-value=0.00036 Score=55.56 Aligned_cols=68 Identities=18% Similarity=0.198 Sum_probs=49.2
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEE--CCE---------------EccC--CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLY--NGK---------------PIEA--SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~--~g~---------------~l~~--~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |... -.+.|+| -|+ ...+ .+|+.+..+ .....|+|++++.
T Consensus 11 lvkPG~sl~LsC~~S--G~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~ 88 (123)
T d1mqkh_ 11 LVQPGGSLKLSCAAS--GFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKS 88 (123)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCG
T ss_pred eECCCCCEEEEEEEC--cccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeecc
Confidence 689999999999998 6544 4678987 111 1111 246666554 4567899999999
Q ss_pred CCCEEEEEEEEcC
Q psy2166 760 EDTGVYTCRATNK 772 (805)
Q Consensus 760 ~d~G~Y~C~a~N~ 772 (805)
+|++.|.|.....
T Consensus 89 eDtAvYYCAr~~~ 101 (123)
T d1mqkh_ 89 EDTAMYYCVRHEY 101 (123)
T ss_dssp GGCEEEEEEEEET
T ss_pred CcccceeEEecCC
Confidence 9999999976543
|
| >d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.48 E-value=0.00061 Score=53.91 Aligned_cols=69 Identities=17% Similarity=0.214 Sum_probs=49.3
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEE--CCEE------c-----------cC--CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLY--NGKP------I-----------EA--SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g~~------l-----------~~--~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+.++..-.-.+.|++ -|+- + .+ ..|+.+..+ .+...|+|++++.
T Consensus 11 ~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~~L~~ 90 (120)
T d1dlfh_ 11 LVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMNTLRA 90 (120)
T ss_dssp EECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred eECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceeccceeeccC
Confidence 6899999999999983222445788987 2211 1 11 146666655 4578899999999
Q ss_pred CCCEEEEEEEEc
Q psy2166 760 EDTGVYTCRATN 771 (805)
Q Consensus 760 ~d~G~Y~C~a~N 771 (805)
+|++.|.|....
T Consensus 91 eDtAvYYCA~~~ 102 (120)
T d1dlfh_ 91 EDTGIYYCTGIY 102 (120)
T ss_dssp GGCEEEEEEEEB
T ss_pred CCceEEEeeEec
Confidence 999999997543
|
| >d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.48 E-value=0.00045 Score=54.58 Aligned_cols=67 Identities=15% Similarity=0.200 Sum_probs=49.1
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEEC--CEE------cc-C----------CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLYN--GKP------IE-A----------SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~~--g~~------l~-~----------~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |... -.+.|+|- |+. +. . ..|+.+..+ .....|+|++++.
T Consensus 10 ~~kPG~sl~LsC~~S--G~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~ 87 (117)
T d1um5h1 10 LVKPGGSVKMSCKAS--EYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTS 87 (117)
T ss_dssp EECTTCCEEEEEEES--SCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCG
T ss_pred eECCCCCEEEEEEEc--cccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCC
Confidence 689999999999998 6543 47899871 211 11 1 156666554 4567899999999
Q ss_pred CCCEEEEEEEEc
Q psy2166 760 EDTGVYTCRATN 771 (805)
Q Consensus 760 ~d~G~Y~C~a~N 771 (805)
+|++.|.|....
T Consensus 88 eDtAvYYCAr~~ 99 (117)
T d1um5h1 88 EDSAVYYCARSS 99 (117)
T ss_dssp GGCEEEEEEEEE
T ss_pred CcceEEEEeecc
Confidence 999999997543
|
| >d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.48 E-value=0.00016 Score=57.53 Aligned_cols=91 Identities=10% Similarity=0.081 Sum_probs=53.1
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCc--eEEEeeCC---EEEEEEccCCCC--CC
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHR--YRTFHDFG---IVILDILYCYEE--NS 566 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~--~~~~~~~~---~~~L~i~~v~~~--d~ 566 (805)
.+|.+....+..........++|.|.+.++-+....|+|.++|+.+..... .....++. .+.|.|..-... ..
T Consensus 4 ~~P~V~~l~p~~~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~ 83 (105)
T d1dn0b2 4 SAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTD 83 (105)
T ss_dssp BCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CC
T ss_pred cCCeEEeECCCccccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCC
Confidence 456665443333324557889999999987666799999999977643211 01122232 235676643322 12
Q ss_pred EEEEEEEEcCCcceEEEE
Q psy2166 567 GVYECRATNKYGSDVTKA 584 (805)
Q Consensus 567 G~Y~C~a~n~~g~~~~~~ 584 (805)
..|+|.+.+..+.....+
T Consensus 84 ~~ytC~V~H~~~~~~~~v 101 (105)
T d1dn0b2 84 EHVVCKVQHPNGNKEKNV 101 (105)
T ss_dssp CEEEEEEECTTCCEEEEE
T ss_pred CEEEEEEEECCCCEEeEE
Confidence 379999999876655443
|
| >d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.48 E-value=0.00033 Score=56.58 Aligned_cols=71 Identities=18% Similarity=0.264 Sum_probs=53.1
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-----------CCCceEEEecC--cEEEEEEcccccC
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-----------LGSRFKTTADF--GFVTLDLTEVYDR 134 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-----------~~~~~~~~~~~--~~~~L~I~~~~~~ 134 (805)
..+..|+++.|.|.+++..-....+.|+| .|+.+ . -.+|+.++.|+ ....|.|.+++.+
T Consensus 9 ~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~e 88 (133)
T d1rzfh1 9 EVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRSD 88 (133)
T ss_dssp EEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred ceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCCC
Confidence 46889999999999996544555788987 23211 1 13588888774 5778999999999
Q ss_pred CCeEEEEEEEeC
Q psy2166 135 DQGIYTCRAWNL 146 (805)
Q Consensus 135 D~G~Y~C~a~n~ 146 (805)
|++.|.|.....
T Consensus 89 DtA~YYCAr~~~ 100 (133)
T d1rzfh1 89 DTAVYYCASNSI 100 (133)
T ss_dssp GCEEEEEEEEEC
T ss_pred CCEEEEeeeccC
Confidence 999999976443
|
| >d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=97.48 E-value=0.00029 Score=55.83 Aligned_cols=71 Identities=28% Similarity=0.339 Sum_probs=51.3
Q ss_pred CceecCCCcEEEEEEEecCCCC-CceEEEEE--CCEecC----------------CCCceEEEec--CcEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDP-NLKIEWIF--NGKPLE----------------LGSRFKTTAD--FGFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p-~~~v~W~k--~g~~i~----------------~~~~~~~~~~--~~~~~L~I~~~~~ 133 (805)
...+..|++++|.|.+++..-. ...+.|+| .|+.+. ..+|+.++.| .....|.|.+++.
T Consensus 9 ~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~ 88 (119)
T d1ncwh1 9 PGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTT 88 (119)
T ss_dssp CSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred CcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeecccccccc
Confidence 3478899999999999954222 24578987 342221 1247888775 4567899999999
Q ss_pred CCCeEEEEEEEe
Q psy2166 134 RDQGIYTCRAWN 145 (805)
Q Consensus 134 ~D~G~Y~C~a~n 145 (805)
+|++.|.|....
T Consensus 89 eDTAvYYCAr~~ 100 (119)
T d1ncwh1 89 EDTATYYCAGLL 100 (119)
T ss_dssp GGCEEEEEEEEE
T ss_pred CCceEEEEeEec
Confidence 999999997543
|
| >d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.47 E-value=7.7e-05 Score=58.92 Aligned_cols=73 Identities=5% Similarity=-0.063 Sum_probs=46.7
Q ss_pred cCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCc---EEEEEEcCCCCCCCEEEEEEEEcCCccEE
Q psy2166 704 LSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG---MVVLEILGTKIEDTGVYTCRATNKWGQAE 777 (805)
Q Consensus 704 v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~ 777 (805)
-..++.++|.|.+.++......|.|.++|........-....++. .+.|+|..-... .|.|+|.|.+..+...
T Consensus 17 ~~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w~-~~~ytC~V~H~~~~~~ 92 (101)
T d1kcvh2 17 TAAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTWP-SASVTCLVAHPKSSTA 92 (101)
T ss_dssp CTTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTT-TSCCEEEEEEGGGTEE
T ss_pred ccCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhcC-CCeEEEEEEeCCCCee
Confidence 346889999999995544457999998885432111111122222 246887665553 5789999998766543
|
| >d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=97.46 E-value=0.00019 Score=57.68 Aligned_cols=70 Identities=19% Similarity=0.240 Sum_probs=51.6
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------CC-----------CCceEEEecC--cEEEEEEcccccC
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------EL-----------GSRFKTTADF--GFVTLDLTEVYDR 134 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~~-----------~~~~~~~~~~--~~~~L~I~~~~~~ 134 (805)
..+..|+.++|.|.+++.......+.|+| .|+.+ .. .+|+.++.|. ....|.|.+++.+
T Consensus 10 ~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~e 89 (127)
T d2fb4h1 10 GVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPE 89 (127)
T ss_dssp CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred ceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeec
Confidence 46788999999999996533455688987 22211 11 2477887764 5678999999999
Q ss_pred CCeEEEEEEEe
Q psy2166 135 DQGIYTCRAWN 145 (805)
Q Consensus 135 D~G~Y~C~a~n 145 (805)
|++.|.|....
T Consensus 90 DTA~YYCAr~~ 100 (127)
T d2fb4h1 90 DTGVYFCARDG 100 (127)
T ss_dssp GCEEEEEEEEC
T ss_pred ceeEEEEEEec
Confidence 99999997644
|
| >d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.45 E-value=0.00029 Score=56.17 Aligned_cols=67 Identities=18% Similarity=0.295 Sum_probs=48.8
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEEC--CEE------cc-C----------CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLYN--GKP------IE-A----------SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~~--g~~------l~-~----------~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |.-. -.+.|+|- |+. +. . .+|+.+..| .....|+|++++.
T Consensus 11 ~vkpg~sl~LsC~~S--G~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~ 88 (121)
T d1ol0a_ 11 LVQPGGSLRLSCAAS--GFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRA 88 (121)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred eECCCCCeEEEEEEc--CcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeeccc
Confidence 679999999999998 6443 46789871 111 11 1 146777665 4578899999999
Q ss_pred CCCEEEEEEEEc
Q psy2166 760 EDTGVYTCRATN 771 (805)
Q Consensus 760 ~d~G~Y~C~a~N 771 (805)
+|++.|.|....
T Consensus 89 eDtAvYYCAr~~ 100 (121)
T d1ol0a_ 89 EDTAVYYCAREP 100 (121)
T ss_dssp GGCEEEEEEECC
T ss_pred ccceEEEEEEec
Confidence 999999997543
|
| >d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.44 E-value=0.00036 Score=55.69 Aligned_cols=69 Identities=16% Similarity=0.259 Sum_probs=49.3
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC----CE-------------EccC--CCCeEEEee--CcEEEEEEcCCCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN----GK-------------PIEA--SHRIRTVHA--FGMVVLEILGTKIED 761 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~----g~-------------~l~~--~~~~~~~~~--~~~~~L~i~~v~~~d 761 (805)
.+++|++++|+|.+.++..-.-.+.|++- |- ...+ ..|+.+..+ .....|+|++++.+|
T Consensus 11 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~eD 90 (125)
T d1op3h1 11 LVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVED 90 (125)
T ss_dssp EEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred eECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCcc
Confidence 68899999999999832223346889871 11 1111 146776655 457889999999999
Q ss_pred CEEEEEEEEc
Q psy2166 762 TGVYTCRATN 771 (805)
Q Consensus 762 ~G~Y~C~a~N 771 (805)
++.|.|....
T Consensus 91 TAvYYCAr~~ 100 (125)
T d1op3h1 91 TAIYYCARKG 100 (125)
T ss_dssp CEEEEEEEEC
T ss_pred ceeEeEeecc
Confidence 9999998654
|
| >d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.44 E-value=0.00025 Score=56.26 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=48.6
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC--CEE------cc-C----------CCCeEEEee--CcEEEEEEcCCCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--GKP------IE-A----------SHRIRTVHA--FGMVVLEILGTKIED 761 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g~~------l~-~----------~~~~~~~~~--~~~~~L~i~~v~~~d 761 (805)
.+++|++++|+|.+.++..-...+.|++- |+. +. . ..|+.+..| .....|+|++++.+|
T Consensus 11 lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~eD 90 (121)
T d2p49b1 11 LVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPED 90 (121)
T ss_dssp EEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGGG
T ss_pred eECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccccc
Confidence 67899999999999832234457889871 110 11 1 136666654 456789999999999
Q ss_pred CEEEEEEEE
Q psy2166 762 TGVYTCRAT 770 (805)
Q Consensus 762 ~G~Y~C~a~ 770 (805)
++.|.|...
T Consensus 91 tAvYYCAr~ 99 (121)
T d2p49b1 91 TATYYCAAG 99 (121)
T ss_dssp CEEEEEEES
T ss_pred eeEEeeecc
Confidence 999999753
|
| >d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.44 E-value=5e-05 Score=60.20 Aligned_cols=86 Identities=9% Similarity=-0.011 Sum_probs=49.3
Q ss_pred CCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCC---EEEEEEccCCCCCCEEEE
Q psy2166 494 EAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFG---IVILDILYCYEENSGVYE 570 (805)
Q Consensus 494 ~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~ 570 (805)
.+|.+....+... -..++.++|.|.+.++-.....|+|.++|.............++. .+.|.|..-.. +.+.|+
T Consensus 4 s~PsV~~l~p~~~-~~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~~w-~~~~yt 81 (102)
T d1mjuh2 4 TAPSVYPLAPVCG-DTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PSQSIT 81 (102)
T ss_dssp BCCEEEEECCCC-------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTT-TTSCCE
T ss_pred cCCEEEEECCCcc-ccCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehhHc-CCceEE
Confidence 4676654333222 346789999999998767788999987764321100001122222 34577776544 356899
Q ss_pred EEEEcCCcceE
Q psy2166 571 CRATNKYGSDV 581 (805)
Q Consensus 571 C~a~n~~g~~~ 581 (805)
|++.+..+...
T Consensus 82 C~V~H~~~~~~ 92 (102)
T d1mjuh2 82 CNVAHPASSTK 92 (102)
T ss_dssp EEEEEGGGTEE
T ss_pred EEEEECCCCEE
Confidence 99998765543
|
| >d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain lambda constant domain, CL-lambda species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.44 E-value=1.2e-05 Score=64.39 Aligned_cols=86 Identities=14% Similarity=0.162 Sum_probs=54.8
Q ss_pred CCCCceEecCCCcccccCCCeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceE--EEeeCCE---EEEEEccCCCCCCE
Q psy2166 493 AEAPKFITQISDVTQLKEGQSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYR--TFHDFGI---VILDILYCYEENSG 567 (805)
Q Consensus 493 ~~~P~~~~~~~~~~~v~~G~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~--~~~~~~~---~~L~i~~v~~~d~G 567 (805)
..+|.+.+.++..... .++.++|.|.+.++-.....|+|++||+.+....... ...++.. +.|.|..-...+..
T Consensus 3 ~~~P~V~v~~ps~~~~-~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~ 81 (104)
T d1nfde2 3 KSSPKVTVFPPSPEEL-RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHN 81 (104)
T ss_dssp CBCCEEECCCCCHHHH-HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCS
T ss_pred CcCCEEEEECCCHHHH-cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCC
Confidence 3567776655444322 4667999999998655578999999999986432211 1122332 33555443334556
Q ss_pred EEEEEEEcCCcc
Q psy2166 568 VYECRATNKYGS 579 (805)
Q Consensus 568 ~Y~C~a~n~~g~ 579 (805)
.|+|.|.+....
T Consensus 82 ~ytC~V~H~~~~ 93 (104)
T d1nfde2 82 RVSCQVTHEGET 93 (104)
T ss_dssp CEEEEEECTTTT
T ss_pred EEEEEEEECCCc
Confidence 899999987544
|
| >d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.44 E-value=0.00022 Score=56.75 Aligned_cols=69 Identities=17% Similarity=0.248 Sum_probs=51.6
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------CC-----------CCceEEEec--CcEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------EL-----------GSRFKTTAD--FGFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~~-----------~~~~~~~~~--~~~~~L~I~~~~~ 133 (805)
...+..|+++.|.|.+++..-....+.|+| .|+.+ .. .+|+.++.| .....|.|.+++.
T Consensus 9 ~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~ 88 (124)
T d1yedb1 9 PELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKS 88 (124)
T ss_dssp CEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCG
T ss_pred CceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCC
Confidence 346789999999999996534455788987 23221 11 247888876 3677899999999
Q ss_pred CCCeEEEEEE
Q psy2166 134 RDQGIYTCRA 143 (805)
Q Consensus 134 ~D~G~Y~C~a 143 (805)
+|++.|+|..
T Consensus 89 eDTAvYYCAR 98 (124)
T d1yedb1 89 EDSAVYFCTR 98 (124)
T ss_dssp GGCEEEEEEE
T ss_pred CcceEEEecc
Confidence 9999999975
|
| >d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.43 E-value=0.00018 Score=57.89 Aligned_cols=70 Identities=17% Similarity=0.291 Sum_probs=51.7
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-C----------CCceEEEecC--cEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-L----------GSRFKTTADF--GFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-~----------~~~~~~~~~~--~~~~L~I~~~~~ 133 (805)
...+..|++++|.|.+++..-....+.|++ .|+.+ . . .+|+.++.|. ....|.|.+++.
T Consensus 9 ~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~~ 88 (130)
T d1rzga1 9 AEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLRS 88 (130)
T ss_dssp CEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecCC
Confidence 346788999999999986534455789987 23221 1 1 2477787764 567799999999
Q ss_pred CCCeEEEEEEE
Q psy2166 134 RDQGIYTCRAW 144 (805)
Q Consensus 134 ~D~G~Y~C~a~ 144 (805)
+|++.|.|...
T Consensus 89 eDtA~YYCAr~ 99 (130)
T d1rzga1 89 EDTAVFYCASP 99 (130)
T ss_dssp GGCEEEEEEEC
T ss_pred CccEEEEEEEe
Confidence 99999999864
|
| >d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]
Probab=97.43 E-value=0.00034 Score=55.84 Aligned_cols=68 Identities=13% Similarity=0.216 Sum_probs=49.7
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEEC--C---------------EEccC--CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLYN--G---------------KPIEA--SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~~--g---------------~~l~~--~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |... -.+.|++- | ....+ ..|+.+..+ .....|+|++++.
T Consensus 11 lvkPg~sl~LsC~~S--G~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~ 88 (122)
T d1bz7b1 11 LVQPGGSRKLSCAAS--GFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRS 88 (122)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred eECCCCCeEEEEEEc--CCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecc
Confidence 578999999999998 6544 46889881 1 11111 156766655 4578899999999
Q ss_pred CCCEEEEEEEEcC
Q psy2166 760 EDTGVYTCRATNK 772 (805)
Q Consensus 760 ~d~G~Y~C~a~N~ 772 (805)
+|++.|.|...+.
T Consensus 89 eDTAvYYCAr~~~ 101 (122)
T d1bz7b1 89 EDTAIYYCTRGGT 101 (122)
T ss_dssp GGCEEEEEEEECC
T ss_pred cCceEEEeecCCC
Confidence 9999999976543
|
| >d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Camel (Camelus dromedarius) [TaxId: 9838]
Probab=97.43 E-value=0.00039 Score=55.83 Aligned_cols=69 Identities=19% Similarity=0.313 Sum_probs=48.6
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC--CEE------cc---------C--CCCeEEEee--CcEEEEEEcCCCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--GKP------IE---------A--SHRIRTVHA--FGMVVLEILGTKIED 761 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g~~------l~---------~--~~~~~~~~~--~~~~~L~i~~v~~~d 761 (805)
.+++|++++|+|.+.++....-.+.|++- |+. +. + .+|+.+..| .....|+|++++.+|
T Consensus 10 lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~eD 89 (126)
T d1rjca1 10 SVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPED 89 (126)
T ss_dssp EECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGGG
T ss_pred eECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCccc
Confidence 57899999999999833344457899881 211 11 1 146776655 445779999999999
Q ss_pred CEEEEEEEEc
Q psy2166 762 TGVYTCRATN 771 (805)
Q Consensus 762 ~G~Y~C~a~N 771 (805)
++.|.|....
T Consensus 90 TAvYYCAr~~ 99 (126)
T d1rjca1 90 TAMYYCAADT 99 (126)
T ss_dssp CEEEEEEECC
T ss_pred CceeEEEeec
Confidence 9999997653
|
| >d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.43 E-value=0.00012 Score=60.69 Aligned_cols=78 Identities=18% Similarity=0.310 Sum_probs=53.9
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCC----------------CceEEEecCcEEEEEE
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELG----------------SRFKTTADFGFVTLDL 128 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~----------------~~~~~~~~~~~~~L~I 128 (805)
+|.+.+-.++...+..+..++|.|.+.+.-.....|+|++||+.+..+ +.|.+. +.|.|
T Consensus 4 PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~s-----S~L~v 78 (127)
T d1ogae2 4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLS-----SRLRV 78 (127)
T ss_dssp CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEE-----EEEEE
T ss_pred CCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEE-----EEEEE
Confidence 565555444444566788999999999764447789999999887642 123222 36888
Q ss_pred cccccCCCe-EEEEEEEeCC
Q psy2166 129 TEVYDRDQG-IYTCRAWNLA 147 (805)
Q Consensus 129 ~~~~~~D~G-~Y~C~a~n~~ 147 (805)
....-.+.| .|+|.+.+..
T Consensus 79 ~~~~W~~~g~~ytC~V~H~~ 98 (127)
T d1ogae2 79 SATFWQNPRNHFRCQVQFYG 98 (127)
T ss_dssp EHHHHTCTTCEEEEEEEECC
T ss_pred CHHHhCCCCCEEEEEEEECC
Confidence 776666655 7999998753
|
| >d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.43 E-value=0.00047 Score=55.00 Aligned_cols=67 Identities=13% Similarity=0.259 Sum_probs=49.0
Q ss_pred ccCCCCeEEEEEEEeecCCC--CeEEEEEEC--CEE------ccC-----------CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQ--TMTVEFLYN--GKP------IEA-----------SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p--~~~v~W~~~--g~~------l~~-----------~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|.|.+. |.. ...+.|++- |+. +.. .+|+.+..+ .+...|+|.+++.
T Consensus 11 ~vkpG~sl~LsC~~S--G~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~ 88 (120)
T d1pg7x1 11 LVKPGASVKISCKAS--GYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTS 88 (120)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred EECCCCCEEEEEEEc--cccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCC
Confidence 688999999999998 654 346889881 211 111 246666554 4577899999999
Q ss_pred CCCEEEEEEEEc
Q psy2166 760 EDTGVYTCRATN 771 (805)
Q Consensus 760 ~d~G~Y~C~a~N 771 (805)
+|++.|.|....
T Consensus 89 eDtA~YYCAr~~ 100 (120)
T d1pg7x1 89 NDSAVYYCARED 100 (120)
T ss_dssp GGCEEEEEEEEC
T ss_pred CcceEEEeeecC
Confidence 999999998654
|
| >d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=97.42 E-value=0.00027 Score=57.10 Aligned_cols=69 Identities=19% Similarity=0.326 Sum_probs=51.8
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-------------CCCceEEEecC--cEEEEEEcccc
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-------------LGSRFKTTADF--GFVTLDLTEVY 132 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-------------~~~~~~~~~~~--~~~~L~I~~~~ 132 (805)
..+..|++++|.|.+++.......+.|++ .|+.+ . -.+|+.++.|. ....|.|.+++
T Consensus 10 ~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~ 89 (131)
T d3c2ah1 10 GLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLK 89 (131)
T ss_dssp CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCC
T ss_pred ceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceeccc
Confidence 46889999999999996544455788987 23211 1 12478887763 67789999999
Q ss_pred cCCCeEEEEEEE
Q psy2166 133 DRDQGIYTCRAW 144 (805)
Q Consensus 133 ~~D~G~Y~C~a~ 144 (805)
.+|++.|.|...
T Consensus 90 ~eDTAvYYCAR~ 101 (131)
T d3c2ah1 90 TEDTAVYSCTTD 101 (131)
T ss_dssp GGGCEEEEEEEE
T ss_pred cCCceEEEEecc
Confidence 999999999864
|
| >d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]
Probab=97.42 E-value=0.00051 Score=54.67 Aligned_cols=67 Identities=16% Similarity=0.277 Sum_probs=48.9
Q ss_pred ccCCCCeEEEEEEEeecCCC----CeEEEEEEC--CEE------ccC----------CCCeEEEee--CcEEEEEEcCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQ----TMTVEFLYN--GKP------IEA----------SHRIRTVHA--FGMVVLEILGTK 758 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p----~~~v~W~~~--g~~------l~~----------~~~~~~~~~--~~~~~L~i~~v~ 758 (805)
.+++|++++|+|.+. |.. ...+.|+|- |+. +.. ..|+.+..| .....|+|.+++
T Consensus 11 ~vkPg~sl~LsC~~S--G~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~ 88 (120)
T d1ai1h1 11 VIKPSQSLSLTCIVS--GFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVT 88 (120)
T ss_dssp EECSSSCEEEEEEEE--SSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCC
T ss_pred eECCCCCEEEEEEEc--ccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeee
Confidence 689999999999998 643 246889872 211 111 146766654 456889999999
Q ss_pred CCCCEEEEEEEEc
Q psy2166 759 IEDTGVYTCRATN 771 (805)
Q Consensus 759 ~~d~G~Y~C~a~N 771 (805)
.+|++.|.|....
T Consensus 89 ~eDtAvYYCAr~~ 101 (120)
T d1ai1h1 89 NEDTAMYYCSREN 101 (120)
T ss_dssp GGGCEEEEEEEEE
T ss_pred ccceeEEEEEecC
Confidence 9999999997543
|
| >d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=97.41 E-value=0.00048 Score=54.54 Aligned_cols=66 Identities=15% Similarity=0.274 Sum_probs=48.8
Q ss_pred ccCCCCeEEEEEEEeecCCCC---eEEEEEE--CCE--------------EccC--CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT---MTVEFLY--NGK--------------PIEA--SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~---~~v~W~~--~g~--------------~l~~--~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |... -.+.|+| -|+ ...+ .+|+.+..+ .....|+|.+++.
T Consensus 11 ~vkPg~sl~LsC~~S--G~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~ 88 (119)
T d1ncwh1 11 LVKPSQSLSLTCTVT--GYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTT 88 (119)
T ss_dssp EECTTSCEEEEEEEE--SSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred EECCCCCEEEEEEEc--cccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeecccccccc
Confidence 689999999999999 7654 3578987 121 1111 246776654 4578899999999
Q ss_pred CCCEEEEEEEE
Q psy2166 760 EDTGVYTCRAT 770 (805)
Q Consensus 760 ~d~G~Y~C~a~ 770 (805)
+|++.|.|...
T Consensus 89 eDTAvYYCAr~ 99 (119)
T d1ncwh1 89 EDTATYYCAGL 99 (119)
T ss_dssp GGCEEEEEEEE
T ss_pred CCceEEEEeEe
Confidence 99999999643
|
| >d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus), gamma2 [TaxId: 10090]
Probab=97.40 E-value=0.00011 Score=58.34 Aligned_cols=82 Identities=13% Similarity=0.120 Sum_probs=49.6
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCe-EEEeeCc----EEEEEEcCCCCCCCEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI-RTVHAFG----MVVLEILGTKIEDTGVY 765 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~-~~~~~~~----~~~L~i~~v~~~d~G~Y 765 (805)
+|.+...+... ....++.++|.|.+.++......|+|.+||+........ .....+| .+.|.|..-..+....|
T Consensus 4 ~P~V~l~~ps~-~~~~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~y 82 (102)
T d1igtb4 4 APQVYVLPPPE-EEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSY 82 (102)
T ss_dssp CCEEEEECCCG-GGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCE
T ss_pred CCEEEEECCCH-HHhcCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEE
Confidence 45555433222 333578899999999554445799999999865432111 0112222 24577655444456689
Q ss_pred EEEEEcCC
Q psy2166 766 TCRATNKW 773 (805)
Q Consensus 766 ~C~a~N~~ 773 (805)
+|.|.+..
T Consensus 83 tC~V~H~~ 90 (102)
T d1igtb4 83 SCSVVHEG 90 (102)
T ss_dssp EEEEECTT
T ss_pred EEEEEeCC
Confidence 99998754
|
| >d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.39 E-value=0.0003 Score=56.17 Aligned_cols=83 Identities=17% Similarity=0.182 Sum_probs=51.6
Q ss_pred CCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceEE----EecCc---EEEEEEcccccCCCe
Q psy2166 65 KPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFKT----TADFG---FVTLDLTEVYDRDQG 137 (805)
Q Consensus 65 ~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~~----~~~~~---~~~L~I~~~~~~D~G 137 (805)
+|.+.+-++....+ .+..++|.|.+.+.-.....|+|++||..+..+..... ..++. .+.|.|..-......
T Consensus 5 ~P~V~l~~ps~~~~-~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~ 83 (107)
T d1mjul2 5 APTVSIFPPSSEQL-TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHN 83 (107)
T ss_dssp CCEEEEECCCHHHH-TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCC
T ss_pred CCEEEEECCCHHHh-cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCC
Confidence 45554444433333 46789999999975344579999999988764321111 11121 235677665555577
Q ss_pred EEEEEEEeCCe
Q psy2166 138 IYTCRAWNLAG 148 (805)
Q Consensus 138 ~Y~C~a~n~~g 148 (805)
.|+|.+.+...
T Consensus 84 ~ytC~V~H~~~ 94 (107)
T d1mjul2 84 SYTCEATHKTS 94 (107)
T ss_dssp EEEEEEECTTC
T ss_pred EEEEEEEECCC
Confidence 89999988643
|
| >d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.39 E-value=0.00053 Score=54.90 Aligned_cols=69 Identities=19% Similarity=0.217 Sum_probs=49.3
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEE--CCE---------------EccC--CCCeEEEee--CcEEEEEEcCCCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLY--NGK---------------PIEA--SHRIRTVHA--FGMVVLEILGTKIED 761 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g~---------------~l~~--~~~~~~~~~--~~~~~L~i~~v~~~d 761 (805)
.+++|++++|+|.+.++....-.+.|++ -|+ ...+ ..|+.+..| .....|+|++++.+|
T Consensus 11 ~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~eD 90 (127)
T d2fx7h1 11 VKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPED 90 (127)
T ss_dssp EECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred eECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCccc
Confidence 6789999999999983223344688987 111 1111 256767655 457889999999999
Q ss_pred CEEEEEEEEc
Q psy2166 762 TGVYTCRATN 771 (805)
Q Consensus 762 ~G~Y~C~a~N 771 (805)
++.|.|....
T Consensus 91 TavYYCAR~~ 100 (127)
T d2fx7h1 91 TAVYYCAREG 100 (127)
T ss_dssp CEEEEEEEEE
T ss_pred ceEEEEeecc
Confidence 9999998654
|
| >d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]
Probab=97.39 E-value=0.00051 Score=54.30 Aligned_cols=66 Identities=14% Similarity=0.251 Sum_probs=47.7
Q ss_pred ccCCCCeEEEEEEEeecCCC--CeEEEEEE--CCE---------------EccC--CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQ--TMTVEFLY--NGK---------------PIEA--SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p--~~~v~W~~--~g~---------------~l~~--~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |.. .-.+.|+| -|+ ...+ ..|+.+..+ .....|+|++++.
T Consensus 11 ~~kPg~sl~LsC~~S--G~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~ 88 (118)
T d1ct8b1 11 LVKPGASVKLSCKTS--GFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTT 88 (118)
T ss_dssp EECTTCCEEEEEEEE--SSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred eECCCCCEEEEEEEc--cccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCC
Confidence 689999999999998 543 34788887 111 1111 145666544 4568899999999
Q ss_pred CCCEEEEEEEE
Q psy2166 760 EDTGVYTCRAT 770 (805)
Q Consensus 760 ~d~G~Y~C~a~ 770 (805)
+|++.|.|...
T Consensus 89 eDtAvYYCAr~ 99 (118)
T d1ct8b1 89 EDSAIYYCARY 99 (118)
T ss_dssp GGCEEEEEEEE
T ss_pred CcceEEEEeee
Confidence 99999999653
|
| >d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.39 E-value=0.00011 Score=58.25 Aligned_cols=86 Identities=7% Similarity=0.009 Sum_probs=48.1
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEEEeeCc----EEEEEEcCCCCCCCEEE
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRTVHAFG----MVVLEILGTKIEDTGVY 765 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y 765 (805)
.+|.+....... .-..++.++|.|.+.++-.....|+|.+++.......... ...+| .+.|.|..-.. +.+.|
T Consensus 4 s~PsV~~l~p~~-~~~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~-~~~~g~ys~~S~L~v~~~~w-~~~~y 80 (102)
T d1mjuh2 4 TAPSVYPLAPVC-GDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPA-VLQSDLYTLSSSVTVTSSTW-PSQSI 80 (102)
T ss_dssp BCCEEEEECCCC-------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCC-EEETTEEEEEEEEEECTTTT-TTSCC
T ss_pred cCCEEEEECCCc-cccCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEeccc-ccCCCCEEEEEEEEEehhHc-CCceE
Confidence 456554322222 2346789999999995544557999988774321111111 12233 24577776665 35689
Q ss_pred EEEEEcCCccEEE
Q psy2166 766 TCRATNKWGQAEI 778 (805)
Q Consensus 766 ~C~a~N~~G~~~~ 778 (805)
+|.|.+..+....
T Consensus 81 tC~V~H~~~~~~v 93 (102)
T d1mjuh2 81 TCNVAHPASSTKV 93 (102)
T ss_dssp EEEEEEGGGTEEE
T ss_pred EEEEEECCCCEEE
Confidence 9999998765543
|
| >d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=97.38 E-value=0.00073 Score=54.57 Aligned_cols=66 Identities=23% Similarity=0.316 Sum_probs=48.0
Q ss_pred ccCCCCeEEEEEEEeecCC----CCeEEEEEE---------------CC-EEccC--CCCeEEEee--CcEEEEEEcCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGD----QTMTVEFLY---------------NG-KPIEA--SHRIRTVHA--FGMVVLEILGTK 758 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~----p~~~v~W~~---------------~g-~~l~~--~~~~~~~~~--~~~~~L~i~~v~ 758 (805)
.+++|++++|.|.+. |. ....+.|++ ++ ....+ ..|+.+..+ .....|+|++++
T Consensus 11 lvkPg~sv~LsC~~S--G~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~ 88 (126)
T d1etzb1 11 ILQPSQTLSLTCSFS--GFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVD 88 (126)
T ss_dssp EECTTCCEEEEEEEE--SSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred eECCCCCEEEEEEEe--CCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceeccc
Confidence 688999999999998 53 234678987 11 11111 246766655 446789999999
Q ss_pred CCCCEEEEEEEE
Q psy2166 759 IEDTGVYTCRAT 770 (805)
Q Consensus 759 ~~d~G~Y~C~a~ 770 (805)
.+|++.|.|...
T Consensus 89 ~eDtAvYyCAr~ 100 (126)
T d1etzb1 89 TSDTATYHCARR 100 (126)
T ss_dssp GGGCEEEEEEEE
T ss_pred ccccceEEEEEe
Confidence 999999999854
|
| >d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.38 E-value=0.00029 Score=56.32 Aligned_cols=65 Identities=20% Similarity=0.327 Sum_probs=46.9
Q ss_pred ccCCCCeEEEEEEEeecCCC--CeEEEEEEC--CEE------cc---------C--CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQ--TMTVEFLYN--GKP------IE---------A--SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p--~~~v~W~~~--g~~------l~---------~--~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |.. .-.+.|++- |+. +. + ..|+.+..+ .....|+|++++.
T Consensus 11 ~~kpG~Sv~LsC~~S--G~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~ 88 (119)
T d1qnzh_ 11 LVKPGASVKMSCKAS--GYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTS 88 (119)
T ss_dssp EECTTEEEEEEEEEE--TCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECG
T ss_pred eECCCCCEEEEEEEe--ccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCc
Confidence 688999999999998 543 346889871 211 11 1 146666544 4567899999999
Q ss_pred CCCEEEEEEE
Q psy2166 760 EDTGVYTCRA 769 (805)
Q Consensus 760 ~d~G~Y~C~a 769 (805)
+|++.|.|..
T Consensus 89 eDsAvYYCA~ 98 (119)
T d1qnzh_ 89 DDSAVYYCAI 98 (119)
T ss_dssp GGCEEEEEEE
T ss_pred cceeEEEEEE
Confidence 9999999964
|
| >d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), gamma-chain [TaxId: 9606]
Probab=97.38 E-value=0.00013 Score=55.15 Aligned_cols=64 Identities=6% Similarity=-0.003 Sum_probs=47.2
Q ss_pred CeEEEEEEEeeCCCCCcEEEEEECCEEccCCCceEEEeeCCEEEEEEccCCCCCCEEEEEEEEcCC
Q psy2166 512 QSAHFEARLTPVTDPDLVVEWFYNGKKLPHGHRYRTFHDFGIVILDILYCYEENSGVYECRATNKY 577 (805)
Q Consensus 512 ~~v~L~C~v~~~g~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 577 (805)
+.++|.|.+.++-++...|+|.+||..+..........++.+..+.+..+...| .|+|.+.+..
T Consensus 14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~gtys~~s~~~~~~~~--~yTC~V~H~~ 77 (86)
T d1hxma2 14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKYEDSN--SVTCSVQHDN 77 (86)
T ss_dssp ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEEECTTSSEEEEEEEEETTTT--TCEEEEEETT
T ss_pred CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEeeeccCCcEEEEEEEecCCCC--EEEEEEEECC
Confidence 446899999988778899999999998866544444445566666666554444 6999999863
|
| >d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 3 [TaxId: 9606]
Probab=97.38 E-value=0.00049 Score=55.28 Aligned_cols=68 Identities=21% Similarity=0.250 Sum_probs=49.4
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEEC----CEE----cc-C----------CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLYN----GKP----IE-A----------SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~~----g~~----l~-~----------~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|.|.+. |... -.+.|++- |-+ +. . ..|+.+..| .....|+|++++.
T Consensus 11 ~~kpg~sl~LsC~~S--G~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~ 88 (127)
T d2fb4h1 11 VVQPGRSLRLSCSSS--GFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRP 88 (127)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred eECCCCCeEEEEEEC--CCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeee
Confidence 679999999999998 6433 46788871 110 11 1 146666665 4578899999999
Q ss_pred CCCEEEEEEEEcC
Q psy2166 760 EDTGVYTCRATNK 772 (805)
Q Consensus 760 ~d~G~Y~C~a~N~ 772 (805)
+|++.|.|.....
T Consensus 89 eDTA~YYCAr~~~ 101 (127)
T d2fb4h1 89 EDTGVYFCARDGG 101 (127)
T ss_dssp GGCEEEEEEEECS
T ss_pred cceeEEEEEEecC
Confidence 9999999986544
|
| >d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.37 E-value=0.0003 Score=55.92 Aligned_cols=66 Identities=17% Similarity=0.220 Sum_probs=49.1
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEE--CCEE------cc---------C--CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLY--NGKP------IE---------A--SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~--~g~~------l~---------~--~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |... -.+.|++ -|+- +. + ..|+.+..+ .....|+|++++.
T Consensus 11 ~~kPG~sl~LsC~~S--G~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~ 88 (124)
T d1yedb1 11 LVRPGTSVKLSCKTS--GYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKS 88 (124)
T ss_dssp EECTTCEEEEEEEEE--SSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCG
T ss_pred eECCCCCEEEEEEEc--CCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCC
Confidence 688999999999998 6544 4688987 1110 11 1 257777665 5678899999999
Q ss_pred CCCEEEEEEEE
Q psy2166 760 EDTGVYTCRAT 770 (805)
Q Consensus 760 ~d~G~Y~C~a~ 770 (805)
+|++.|.|...
T Consensus 89 eDTAvYYCAR~ 99 (124)
T d1yedb1 89 EDSAVYFCTRW 99 (124)
T ss_dssp GGCEEEEEEEC
T ss_pred CcceEEEeccc
Confidence 99999999753
|
| >d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.37 E-value=6.3e-05 Score=59.60 Aligned_cols=70 Identities=21% Similarity=0.284 Sum_probs=51.0
Q ss_pred ceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------CC----------CCceEEEecC--cEEEEEEcccccCC
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------EL----------GSRFKTTADF--GFVTLDLTEVYDRD 135 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~~----------~~~~~~~~~~--~~~~L~I~~~~~~D 135 (805)
..|..|++++|.|.+++..-....+.|+| .|+.+ .. .+|+.++.|. ....|.|.+++.+|
T Consensus 10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eD 89 (116)
T d1fn4b1 10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD 89 (116)
T ss_dssp SBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCC
T ss_pred ceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCC
Confidence 35788999999999996534456788998 33222 11 2466666653 56789999999999
Q ss_pred CeEEEEEEEe
Q psy2166 136 QGIYTCRAWN 145 (805)
Q Consensus 136 ~G~Y~C~a~n 145 (805)
++.|.|....
T Consensus 90 TAvYyCAr~~ 99 (116)
T d1fn4b1 90 TGTYYCTRDL 99 (116)
T ss_dssp CEEEEEEEEC
T ss_pred CEEEEEEeec
Confidence 9999996543
|
| >d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.37 E-value=0.00046 Score=52.72 Aligned_cols=66 Identities=14% Similarity=0.292 Sum_probs=43.9
Q ss_pred cCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCce---EEEecCc---EEEEEEcccccCCCeEEEEEEEeCC
Q psy2166 79 GEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRF---KTTADFG---FVTLDLTEVYDRDQGIYTCRAWNLA 147 (805)
Q Consensus 79 ~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~---~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~n~~ 147 (805)
..++.++|.|.+.+.-.....|+|++||+.+..+... ....++. .+.|.|. ..+...|+|.+.+..
T Consensus 13 ~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~---~~~~~~ytC~V~H~~ 84 (89)
T d2mhaa1 13 RPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVP---LGKEQYYTCHVYHQG 84 (89)
T ss_dssp SCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEE---SSTTTTCEEEEECSS
T ss_pred CCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEec---CcCCCEEEEEEEECC
Confidence 4567899999999764457789999999988754321 2222332 2345554 345557999997753
|
| >d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.37 E-value=0.00052 Score=55.16 Aligned_cols=67 Identities=21% Similarity=0.301 Sum_probs=48.8
Q ss_pred ccCCCCeEEEEEEEeecCCC--CeEEEEEEC--CE------Ecc---------C--CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQ--TMTVEFLYN--GK------PIE---------A--SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p--~~~v~W~~~--g~------~l~---------~--~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |.. .-.+.|++- |+ .+. + .+|+.+..| .....|+|.+++.
T Consensus 11 lvkPG~Sl~LsC~~S--G~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~ 88 (135)
T d1ieha_ 11 LVQPGGSLRVSCAAS--GFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKS 88 (135)
T ss_dssp EECTTCEEEEEEEEE--SSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCS
T ss_pred eECCCCCeEEEEEEc--CCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCc
Confidence 689999999999998 543 356889871 11 011 1 146766655 3457899999999
Q ss_pred CCCEEEEEEEEc
Q psy2166 760 EDTGVYTCRATN 771 (805)
Q Consensus 760 ~d~G~Y~C~a~N 771 (805)
+|++.|.|....
T Consensus 89 eDTAvYYCAr~~ 100 (135)
T d1ieha_ 89 EDTAVYYCAKYS 100 (135)
T ss_dssp SSCEEEEEEEBS
T ss_pred ccceeeEEEEec
Confidence 999999997654
|
| >d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), delta-chain [TaxId: 9606]
Probab=97.36 E-value=0.00025 Score=56.62 Aligned_cols=83 Identities=16% Similarity=0.033 Sum_probs=53.2
Q ss_pred CCCeEEecCCCCceecCCCcEEEEEEEecCCCCCceEEEEECCEecCCCCceE--EEecCc---EEEEEEcccccCCCeE
Q psy2166 64 AKPVFIVPLKPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFNGKPLELGSRFK--TTADFG---FVTLDLTEVYDRDQGI 138 (805)
Q Consensus 64 ~~p~~~~~~~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~g~~i~~~~~~~--~~~~~~---~~~L~I~~~~~~D~G~ 138 (805)
.+|...+-+++...+..+..++|.|.+.+.-.....|+|++||..+..+.... ...++. .+.|.|..... ...
T Consensus 7 ~~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w--~~~ 84 (107)
T d1hxmb2 7 VSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL--DKE 84 (107)
T ss_dssp CSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG--GSC
T ss_pred CCCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccC--CCe
Confidence 45555555555556778899999999997644567899999998776432111 112222 23566655433 237
Q ss_pred EEEEEEeCCe
Q psy2166 139 YTCRAWNLAG 148 (805)
Q Consensus 139 Y~C~a~n~~g 148 (805)
|+|.+.+...
T Consensus 85 ytC~V~H~s~ 94 (107)
T d1hxmb2 85 HRCIVRHENN 94 (107)
T ss_dssp EEEEEEETTS
T ss_pred EEEEEEECCC
Confidence 9999988643
|
| >d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=97.36 E-value=0.00031 Score=56.34 Aligned_cols=69 Identities=26% Similarity=0.301 Sum_probs=49.8
Q ss_pred ceecCCCcEEEEEEEecCCCC-CceEEEEE--CCEec------C----------CCCceEEEec--CcEEEEEEcccccC
Q psy2166 76 FKLGEAQPLHLEAQVEPKNDP-NLKIEWIF--NGKPL------E----------LGSRFKTTAD--FGFVTLDLTEVYDR 134 (805)
Q Consensus 76 ~~v~~G~~v~L~C~~~~~~~p-~~~v~W~k--~g~~i------~----------~~~~~~~~~~--~~~~~L~I~~~~~~ 134 (805)
..|..|+++.|.|.+++..-. ...+.|+| .|+.+ . ..+|+.+..| .....|.|.+++.+
T Consensus 10 ~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~e 89 (127)
T d3cx5j1 10 GLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTE 89 (127)
T ss_dssp SEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGG
T ss_pred ceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccccc
Confidence 467889999999999954222 24689987 23222 1 1246666665 46778999999999
Q ss_pred CCeEEEEEEE
Q psy2166 135 DQGIYTCRAW 144 (805)
Q Consensus 135 D~G~Y~C~a~ 144 (805)
|++.|.|...
T Consensus 90 DtAvYyCAr~ 99 (127)
T d3cx5j1 90 DTATYYCARS 99 (127)
T ss_dssp GCEEEEEEEE
T ss_pred cceEEEeeee
Confidence 9999999753
|
| >d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.36 E-value=0.00016 Score=57.40 Aligned_cols=70 Identities=19% Similarity=0.292 Sum_probs=51.5
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEec------C-------------CCCceEEEec--CcEEEEEEccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKPL------E-------------LGSRFKTTAD--FGFVTLDLTEV 131 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~i------~-------------~~~~~~~~~~--~~~~~L~I~~~ 131 (805)
...+..|++++|.|.+++..-....+.|++ .|+.+ . -.+|+.++.| .....|.|.++
T Consensus 9 ~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~L 88 (121)
T d1nfdf1 9 GDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRL 88 (121)
T ss_dssp CEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEESC
T ss_pred CceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceeccc
Confidence 357889999999999996534455678998 33221 1 1236677766 35777999999
Q ss_pred ccCCCeEEEEEEE
Q psy2166 132 YDRDQGIYTCRAW 144 (805)
Q Consensus 132 ~~~D~G~Y~C~a~ 144 (805)
+.+|++.|+|...
T Consensus 89 ~~eDTAvYYCAr~ 101 (121)
T d1nfdf1 89 RVDDTAIYYCTRA 101 (121)
T ss_dssp CGGGCEECEEEEE
T ss_pred CCCcceEEEEecc
Confidence 9999999999754
|
| >d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.36 E-value=0.00021 Score=55.51 Aligned_cols=65 Identities=23% Similarity=0.293 Sum_probs=45.6
Q ss_pred ccCCCCeEEEEEEEeecCC--CCeEEEEEEC--CE--------------EccC--CCCeEEEee--CcEEEEEEcCCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGD--QTMTVEFLYN--GK--------------PIEA--SHRIRTVHA--FGMVVLEILGTKIE 760 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~--p~~~v~W~~~--g~--------------~l~~--~~~~~~~~~--~~~~~L~i~~v~~~ 760 (805)
.+++|++++|+|.+. |. -.-.+.|++- |+ ...+ ..|+.+..+ .....|+|++++.+
T Consensus 4 lvkPG~sl~LsC~~S--G~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~e 81 (107)
T d1sjva_ 4 LVQAGESLKLSCAAS--GNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPE 81 (107)
T ss_dssp CCCTTCCEEEEECCC--C-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGG
T ss_pred EecCCCCcEEEEEEC--CCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcc
Confidence 578999999999997 53 3346789872 11 1111 146666654 34678999999999
Q ss_pred CCEEEEEEE
Q psy2166 761 DTGVYTCRA 769 (805)
Q Consensus 761 d~G~Y~C~a 769 (805)
|++.|.|..
T Consensus 82 DtAvYyCA~ 90 (107)
T d1sjva_ 82 DTAVYYCYT 90 (107)
T ss_dssp GCSEEEEEE
T ss_pred cceeeeEec
Confidence 999999964
|
| >d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Human (Homo sapiens), beta-chain [TaxId: 9606]
Probab=97.35 E-value=7.5e-05 Score=60.54 Aligned_cols=69 Identities=17% Similarity=0.246 Sum_probs=46.0
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEEC--CE---Ec------------cCCCCeEEE-eeCcEEEEEEcCCCCCCCEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLYN--GK---PI------------EASHRIRTV-HAFGMVVLEILGTKIEDTGV 764 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~~--g~---~l------------~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~ 764 (805)
.+.+|++++|.|... .+ ...+.||+- |+ .| ....+.... .+.....|.|.++..+|+|.
T Consensus 9 ~~~~G~svtL~C~~~-~~--~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~ 85 (112)
T d2cdeb1 9 VIGTGKKITLECSQT-MG--HDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTSQ 85 (112)
T ss_dssp EEETTCCBCCEEEET-TC--CSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTCSE
T ss_pred EECCCCCEEEEEEEe-CC--cccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccccccccc
Confidence 789999999999975 23 357999981 11 00 011112111 12334679999999999999
Q ss_pred EEEEEEcCCc
Q psy2166 765 YTCRATNKWG 774 (805)
Q Consensus 765 Y~C~a~N~~G 774 (805)
|.|.+....|
T Consensus 86 YyCA~~~~~~ 95 (112)
T d2cdeb1 86 YLCASSENIG 95 (112)
T ss_dssp EEEEEECSSS
T ss_pred EEEEEecCCC
Confidence 9999876544
|
| >d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.34 E-value=0.00054 Score=54.75 Aligned_cols=65 Identities=17% Similarity=0.285 Sum_probs=48.3
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEE--CCEE------cc-C----------CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLY--NGKP------IE-A----------SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~--~g~~------l~-~----------~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |... -.+.|++ -|+. +. . ..|+.+..| .....|+|++++.
T Consensus 11 ~~kpg~sl~lsC~~S--G~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~ 88 (127)
T d1n0xh1 11 VKKPGASVKVSCQAS--GYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRS 88 (127)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred eECCCCCEEEEEEEc--CCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCC
Confidence 689999999999999 6544 4688987 1211 11 1 146767655 4578899999999
Q ss_pred CCCEEEEEEE
Q psy2166 760 EDTGVYTCRA 769 (805)
Q Consensus 760 ~d~G~Y~C~a 769 (805)
+|++.|.|.-
T Consensus 89 eDtAvYYCAR 98 (127)
T d1n0xh1 89 ADTAVYYCAR 98 (127)
T ss_dssp GGCEEEEEEE
T ss_pred CCceEEEEEe
Confidence 9999999963
|
| >d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.34 E-value=0.00013 Score=57.67 Aligned_cols=67 Identities=18% Similarity=0.362 Sum_probs=44.3
Q ss_pred CCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeE-EEeeCc----EEEEEEcCCCCCCCEEEEEEEEcC
Q psy2166 706 EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR-TVHAFG----MVVLEILGTKIEDTGVYTCRATNK 772 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~-~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~ 772 (805)
..+.++|.|.+.++......|+|++||+.+....... ....++ .+.|.|..-..+....|+|.|...
T Consensus 17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~ 88 (101)
T d1cqka_ 17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHE 88 (101)
T ss_dssp TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEEC
Confidence 4678999999995444457999999999875432111 122232 245676544445567899999875
|
| >d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.33 E-value=0.00064 Score=53.74 Aligned_cols=66 Identities=15% Similarity=0.230 Sum_probs=48.9
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEEC--CE---------------EccC--CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLYN--GK---------------PIEA--SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~~--g~---------------~l~~--~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |... -.+.|.+- |+ ...+ ..|+.+..+ .+...|+|++++.
T Consensus 11 ~vkpg~sl~LsC~vS--G~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~ 88 (120)
T d1ad9b1 11 VKKPGSSVKVSCKAS--GYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRS 88 (120)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred eECCCCCEEEEEEEc--CCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCC
Confidence 689999999999999 6544 47888871 11 1111 156666554 4578999999999
Q ss_pred CCCEEEEEEEE
Q psy2166 760 EDTGVYTCRAT 770 (805)
Q Consensus 760 ~d~G~Y~C~a~ 770 (805)
+|++.|.|...
T Consensus 89 eDTAvYYCAr~ 99 (120)
T d1ad9b1 89 EDTAFYFCARE 99 (120)
T ss_dssp GGCEEEEEEEE
T ss_pred CcceEEEEEEc
Confidence 99999999754
|
| >d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.32 E-value=0.00049 Score=53.95 Aligned_cols=65 Identities=11% Similarity=0.212 Sum_probs=48.1
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEE--CCE-------E--------ccC--CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLY--NGK-------P--------IEA--SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~--~g~-------~--------l~~--~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |... -.+.|++ -|+ . ..+ .+|+.+..+ .....|+|++++.
T Consensus 11 ~~kPg~sl~LsC~~S--G~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~~ 88 (116)
T d1mjuh1 11 LVKPGASVKLSCKAS--GYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTS 88 (116)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred EECCCCCEEEEEEEc--cCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccCC
Confidence 789999999999998 6544 4678987 111 1 111 146777655 4578899999999
Q ss_pred CCCEEEEEEE
Q psy2166 760 EDTGVYTCRA 769 (805)
Q Consensus 760 ~d~G~Y~C~a 769 (805)
+|++.|.|..
T Consensus 89 eDtAvYYCAr 98 (116)
T d1mjuh1 89 DDSAVYYCAN 98 (116)
T ss_dssp GGCEEEEEEE
T ss_pred CCceEEEEcc
Confidence 9999999964
|
| >d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]
Probab=97.32 E-value=0.00066 Score=54.43 Aligned_cols=66 Identities=15% Similarity=0.260 Sum_probs=48.1
Q ss_pred ccCCCCeEEEEEEEeecCCCC---eEEEEEE--CCE--------------EccC--CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT---MTVEFLY--NGK--------------PIEA--SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~---~~v~W~~--~g~--------------~l~~--~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|.|.+. |... ..+.|++ -|+ ...+ ..|+.+..+ .....|+|.+++.
T Consensus 11 lvkPg~sl~LsC~~S--G~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~ 88 (127)
T d3cx5j1 11 LVQPSQSLSLTCSVT--GYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTT 88 (127)
T ss_dssp EECTTSCEEEEEEEE--SSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCG
T ss_pred eECCCCCEEEEEEEe--cccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceecccc
Confidence 689999999999998 6543 4689988 121 1111 135555443 5578899999999
Q ss_pred CCCEEEEEEEE
Q psy2166 760 EDTGVYTCRAT 770 (805)
Q Consensus 760 ~d~G~Y~C~a~ 770 (805)
+|++.|.|...
T Consensus 89 eDtAvYyCAr~ 99 (127)
T d3cx5j1 89 EDTATYYCARS 99 (127)
T ss_dssp GGCEEEEEEEE
T ss_pred ccceEEEeeee
Confidence 99999999754
|
| >d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.32 E-value=0.00079 Score=54.13 Aligned_cols=67 Identities=16% Similarity=0.263 Sum_probs=49.2
Q ss_pred ccCCCCeEEEEEEEeecCCC--CeEEEEEE--CCE--E----c---------cC--CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQ--TMTVEFLY--NGK--P----I---------EA--SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p--~~~v~W~~--~g~--~----l---------~~--~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |.. .-.+.|+| -|+ + + .+ ..|+.+..| .....|+|++++.
T Consensus 10 ~~kPg~sl~LsC~~S--G~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~ 87 (130)
T d1rhhb1 10 VKKPGSSVQVSCKAS--GGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRS 87 (130)
T ss_dssp EECTTCCEEEEEEET--TSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred eECCCCCeEEEEEEe--CCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCC
Confidence 689999999999998 643 34688987 111 0 1 11 147766655 4567899999999
Q ss_pred CCCEEEEEEEEc
Q psy2166 760 EDTGVYTCRATN 771 (805)
Q Consensus 760 ~d~G~Y~C~a~N 771 (805)
+|++.|.|....
T Consensus 88 eDtAvYyCAr~~ 99 (130)
T d1rhhb1 88 DDTAVYYCARDF 99 (130)
T ss_dssp GGCEEEEEEEEC
T ss_pred CCcEEEEEEeec
Confidence 999999998654
|
| >d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.32 E-value=0.00055 Score=54.67 Aligned_cols=67 Identities=15% Similarity=0.228 Sum_probs=48.5
Q ss_pred ccCCCCeEEEEEEEeecCCC--CeEEEEEE--CCEE------ccC-----------CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQ--TMTVEFLY--NGKP------IEA-----------SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p--~~~v~W~~--~g~~------l~~-----------~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |.. ...+.|+| -|+. +.. ..|+.+..+ .....|+|++++.
T Consensus 11 ~~kpG~sv~LsC~~S--G~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~ 88 (121)
T d1j05b_ 11 LVEPGASVKLSCTAS--GFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTS 88 (121)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred eECCCCCEEEEEEEe--cCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCc
Confidence 689999999999998 643 34788987 1211 111 136666544 4567899999999
Q ss_pred CCCEEEEEEEEc
Q psy2166 760 EDTGVYTCRATN 771 (805)
Q Consensus 760 ~d~G~Y~C~a~N 771 (805)
+|++.|.|....
T Consensus 89 eDtAvYYCAr~~ 100 (121)
T d1j05b_ 89 EDTAVYYCAPFG 100 (121)
T ss_dssp GGCEEEEEEEEB
T ss_pred CcceEEEeEeec
Confidence 999999997643
|
| >d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 1 [TaxId: 9606]
Probab=97.32 E-value=0.00073 Score=54.49 Aligned_cols=68 Identities=18% Similarity=0.267 Sum_probs=49.8
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEE--CC--------------E-EccC--CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLY--NG--------------K-PIEA--SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~--~g--------------~-~l~~--~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |... -.+.|+| -| . ...+ ..|+.+..+ .....|+|++++.
T Consensus 10 ~vkPg~sl~LsC~~S--G~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~ 87 (133)
T d1rzfh1 10 VNKPGSSVKVSCQAS--GATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRS 87 (133)
T ss_dssp EECTTCCEEEEEEES--SSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred eECCCCCEEEEEEEc--CCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCC
Confidence 689999999999998 5433 4688887 11 1 1111 257777666 4578899999999
Q ss_pred CCCEEEEEEEEcC
Q psy2166 760 EDTGVYTCRATNK 772 (805)
Q Consensus 760 ~d~G~Y~C~a~N~ 772 (805)
+|++.|.|.....
T Consensus 88 eDtA~YYCAr~~~ 100 (133)
T d1rzfh1 88 DDTAVYYCASNSI 100 (133)
T ss_dssp GGCEEEEEEEEEC
T ss_pred CCCEEEEeeeccC
Confidence 9999999976443
|
| >d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.31 E-value=0.00097 Score=53.27 Aligned_cols=67 Identities=12% Similarity=0.170 Sum_probs=48.7
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEE--CC--------------E-EccC--CCCeEEEee--CcEEEEEEcCCCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLY--NG--------------K-PIEA--SHRIRTVHA--FGMVVLEILGTKIED 761 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g--------------~-~l~~--~~~~~~~~~--~~~~~L~i~~v~~~d 761 (805)
.+++|++++|+|.+.++..-.-.+.|++ -| . ...+ ..|+.+..+ .....|+|++++.+|
T Consensus 10 ~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~eD 89 (126)
T d1lmka1 10 LMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTSED 89 (126)
T ss_dssp EECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred eECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCCCc
Confidence 6899999999999993223445788987 11 1 1111 256666655 567899999999999
Q ss_pred CEEEEEEE
Q psy2166 762 TGVYTCRA 769 (805)
Q Consensus 762 ~G~Y~C~a 769 (805)
++.|.|..
T Consensus 90 TAvYYCAr 97 (126)
T d1lmka1 90 SAVYYCAR 97 (126)
T ss_dssp CEEEEEEE
T ss_pred ceEEEEee
Confidence 99999964
|
| >d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC homolog, alpha-3 domain species: Human (Homo sapiens), Mic-a [TaxId: 9606]
Probab=97.30 E-value=0.00034 Score=54.22 Aligned_cols=77 Identities=12% Similarity=0.117 Sum_probs=47.3
Q ss_pred CCCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeE--E-EeeCc-E---EEEEEcCCCCCCC
Q psy2166 690 RPPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR--T-VHAFG-M---VVLEILGTKIEDT 762 (805)
Q Consensus 690 ~~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~--~-~~~~~-~---~~L~i~~v~~~d~ 762 (805)
.||.+...... ..++.++|.|.+.++-.+...|+|++||+.+....... . ...++ . ..|.+. .+|.
T Consensus 2 vpP~V~v~~~~----~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~---~~~~ 74 (94)
T d1hyrc1 2 VPPMVNVTRSE----ASEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRIC---QGEE 74 (94)
T ss_dssp BCCEEEEEECC----CSSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEE---TTCG
T ss_pred cCCEEEEEecC----CCCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEc---CCCC
Confidence 35665553322 23567999999996555667999999999887553221 1 12222 2 335554 3344
Q ss_pred EEEEEEEEcCC
Q psy2166 763 GVYTCRATNKW 773 (805)
Q Consensus 763 G~Y~C~a~N~~ 773 (805)
..|+|.+....
T Consensus 75 ~~ytC~V~H~~ 85 (94)
T d1hyrc1 75 QRFTCYMEHSG 85 (94)
T ss_dssp GGEEEEEEETT
T ss_pred CEEEEEEEECC
Confidence 46999998753
|
| >d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.30 E-value=0.00013 Score=57.80 Aligned_cols=82 Identities=13% Similarity=0.169 Sum_probs=49.9
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCe-EEEeeCc----EEEEEEcCCCCCCCEEE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRI-RTVHAFG----MVVLEILGTKIEDTGVY 765 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~-~~~~~~~----~~~L~i~~v~~~d~G~Y 765 (805)
+|.+...+... .-..++.++|.|.+.++......|+|++||+........ .....+| .+.|.|..-..+..-.|
T Consensus 4 ~P~V~i~~ps~-~~~~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~y 82 (102)
T d1l6xa2 4 EPQVYTLPPSR-DELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVF 82 (102)
T ss_dssp CCEEEEECCCG-GGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCE
T ss_pred CCEEEEECcCH-HHhcCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEE
Confidence 45544432222 222578899999999554445799999999876542111 1122233 23577765544555689
Q ss_pred EEEEEcCC
Q psy2166 766 TCRATNKW 773 (805)
Q Consensus 766 ~C~a~N~~ 773 (805)
+|.|.+..
T Consensus 83 tC~V~H~~ 90 (102)
T d1l6xa2 83 SCSVMHEA 90 (102)
T ss_dssp EEEEECTT
T ss_pred EEEEEeCC
Confidence 99999864
|
| >d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Human (Homo sapiens), cluster 4 [TaxId: 9606]
Probab=97.30 E-value=0.0006 Score=55.02 Aligned_cols=66 Identities=23% Similarity=0.318 Sum_probs=48.7
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEEC--CEE------c-----------cC--CCCeEEEee--CcEEEEEEcCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLYN--GKP------I-----------EA--SHRIRTVHA--FGMVVLEILGT 757 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~~--g~~------l-----------~~--~~~~~~~~~--~~~~~L~i~~v 757 (805)
.+++|++++|+|.+. |... ..+.|++- |+. + .+ ..|+.+..| .....|+|+++
T Consensus 11 ~vkpg~sl~LsC~~S--G~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L 88 (131)
T d3c2ah1 11 LVKPGGSLRLTCVAS--GFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSL 88 (131)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred eECCCCCeEEEEEEC--CCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceecc
Confidence 689999999999998 5443 47888871 111 1 11 146666655 45788999999
Q ss_pred CCCCCEEEEEEEE
Q psy2166 758 KIEDTGVYTCRAT 770 (805)
Q Consensus 758 ~~~d~G~Y~C~a~ 770 (805)
+.+|++.|.|...
T Consensus 89 ~~eDTAvYYCAR~ 101 (131)
T d3c2ah1 89 KTEDTAVYSCTTD 101 (131)
T ss_dssp CGGGCEEEEEEEE
T ss_pred ccCCceEEEEecc
Confidence 9999999999864
|
| >d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.30 E-value=7.4e-05 Score=58.91 Aligned_cols=69 Identities=17% Similarity=0.292 Sum_probs=51.3
Q ss_pred CceecCCCcEEEEEEEecCCCCCceEEEEE--CCEe------cC-C----------CCceEEEec--CcEEEEEEccccc
Q psy2166 75 EFKLGEAQPLHLEAQVEPKNDPNLKIEWIF--NGKP------LE-L----------GSRFKTTAD--FGFVTLDLTEVYD 133 (805)
Q Consensus 75 ~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k--~g~~------i~-~----------~~~~~~~~~--~~~~~L~I~~~~~ 133 (805)
...|..|++++|.|.+++..-....+.|+| .|+. |. . .+|+.++.| .....|.|.+++.
T Consensus 9 ~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~~ 88 (117)
T d1b2wh1 9 GGVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRP 88 (117)
T ss_dssp CCEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCCG
T ss_pred CceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccccC
Confidence 347889999999999996533455788987 2321 21 1 147888876 3577899999999
Q ss_pred CCCeEEEEEE
Q psy2166 134 RDQGIYTCRA 143 (805)
Q Consensus 134 ~D~G~Y~C~a 143 (805)
+|++.|+|..
T Consensus 89 eDTAvYYCAr 98 (117)
T d1b2wh1 89 EDTAVYYCAR 98 (117)
T ss_dssp GGCEEEECCE
T ss_pred CcceEEEEcc
Confidence 9999999964
|
| >d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
Probab=97.30 E-value=0.00068 Score=54.46 Aligned_cols=67 Identities=12% Similarity=0.142 Sum_probs=49.0
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEE--CCE---------------EccC--CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLY--NGK---------------PIEA--SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~--~g~---------------~l~~--~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+. |... -.+.|++ -|+ ...+ ..|+.+..+ .....|+|++++.
T Consensus 11 l~kPg~sl~LsC~~S--G~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~ 88 (125)
T d1rihh1 11 LAKPGASMKMSCRAS--GYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTS 88 (125)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred eECCCCCEEEEEEEc--cCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCc
Confidence 689999999999998 6544 4688887 111 1111 146666555 4578899999999
Q ss_pred CCCEEEEEEEEc
Q psy2166 760 EDTGVYTCRATN 771 (805)
Q Consensus 760 ~d~G~Y~C~a~N 771 (805)
+|++.|.|....
T Consensus 89 eDtAvYYCAR~~ 100 (125)
T d1rihh1 89 EDSAVYYCARES 100 (125)
T ss_dssp GGCEEEEEEEEC
T ss_pred ccceEEEEeeeC
Confidence 999999998653
|
| >d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Camelid IG heavy chain variable domain, VHh species: Llama (Lama glama) [TaxId: 9844]
Probab=97.29 E-value=0.00053 Score=55.39 Aligned_cols=67 Identities=25% Similarity=0.374 Sum_probs=49.1
Q ss_pred ccCCCCeEEEEEEEeecCCC--CeEEEEEEC--CE---Ec--------c---------C--CCCeEEEee--CcEEEEEE
Q psy2166 703 NLSEGEIAHFEASLIPVGDQ--TMTVEFLYN--GK---PI--------E---------A--SHRIRTVHA--FGMVVLEI 754 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p--~~~v~W~~~--g~---~l--------~---------~--~~~~~~~~~--~~~~~L~i 754 (805)
.+++|++++|+|.+. |.. .-.+.|++- |+ -| . + ..|+.+..+ .....|+|
T Consensus 11 lvkpg~sl~LsC~~S--G~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i 88 (127)
T d1i3ua_ 11 LVQAGDSLKLSCEAS--GDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQM 88 (127)
T ss_dssp ECCTTCCEEEEEEEE--SSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEE
T ss_pred eECCCCCeEEEEEEc--CCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEee
Confidence 688999999999998 653 357889972 11 01 0 1 136666554 45788999
Q ss_pred cCCCCCCCEEEEEEEEc
Q psy2166 755 LGTKIEDTGVYTCRATN 771 (805)
Q Consensus 755 ~~v~~~d~G~Y~C~a~N 771 (805)
++++.+|++.|.|.+.-
T Consensus 89 ~~l~~eDtAvYYCAr~~ 105 (127)
T d1i3ua_ 89 NSLKPEDTAVYYCAAKT 105 (127)
T ss_dssp CSCCGGGCEEEEEEEES
T ss_pred ecccccceeEEEEEEEe
Confidence 99999999999998753
|
| >d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]
Probab=97.28 E-value=0.00069 Score=53.88 Aligned_cols=68 Identities=16% Similarity=0.289 Sum_probs=49.8
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEEC--CEE------c-----------cC--CCCeEEEee--CcEEEEEEcCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLYN--GKP------I-----------EA--SHRIRTVHA--FGMVVLEILGT 757 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~~--g~~------l-----------~~--~~~~~~~~~--~~~~~L~i~~v 757 (805)
.+++|++++|+|.+. |... -.+.|++- |+. + .+ ..|+.+..| .....|+|+++
T Consensus 11 ~vkpg~sl~LsC~~S--G~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL 88 (122)
T d1q9rb1 11 LVQSGGSLRLSCATS--GFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTL 88 (122)
T ss_dssp EECTTCCEEEEEEEE--SSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred eECCCCCEEEEEEEc--CCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeee
Confidence 689999999999998 6544 46889972 211 1 11 146666654 45678999999
Q ss_pred CCCCCEEEEEEEEcC
Q psy2166 758 KIEDTGVYTCRATNK 772 (805)
Q Consensus 758 ~~~d~G~Y~C~a~N~ 772 (805)
+.+|++.|.|.....
T Consensus 89 ~~eDTAvYYCar~~~ 103 (122)
T d1q9rb1 89 RAEDSATYYCARDHD 103 (122)
T ss_dssp CGGGCEEEEEEECCC
T ss_pred ccCcceEEEEEecCC
Confidence 999999999986443
|
| >d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.27 E-value=0.00015 Score=57.48 Aligned_cols=67 Identities=15% Similarity=0.219 Sum_probs=44.5
Q ss_pred CCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeE-EEeeCc----EEEEEEcCCCCCCCEEEEEEEEcC
Q psy2166 706 EGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR-TVHAFG----MVVLEILGTKIEDTGVYTCRATNK 772 (805)
Q Consensus 706 ~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~-~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~ 772 (805)
.++.++|.|.+.++..+...|+|.+||+++....... ....+| .+.|.|.....++...|+|.|...
T Consensus 18 ~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~ 89 (102)
T d1i1ca2 18 TQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHE 89 (102)
T ss_dssp GSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred cCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeC
Confidence 3578999999996544557999999998765421111 122222 234677665555667899999885
|
| >d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.25 E-value=0.00022 Score=56.44 Aligned_cols=68 Identities=19% Similarity=0.289 Sum_probs=48.7
Q ss_pred ccCCCCeEEEEEEEeecCCCC--eEEEEEE--CCEE------ccC----------CCCeEEEee--CcEEEEEEcCCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQT--MTVEFLY--NGKP------IEA----------SHRIRTVHA--FGMVVLEILGTKIE 760 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~--~~v~W~~--~g~~------l~~----------~~~~~~~~~--~~~~~L~i~~v~~~ 760 (805)
.+++|++++|+|.+. |... -.+.|++ -|+. +.. ..|+.+..| .....|+|++++.+
T Consensus 11 ~vkPg~sl~LsC~~S--G~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~e 88 (116)
T d1fn4b1 11 LVRPSETLSLTCTVS--GFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTD 88 (116)
T ss_dssp BCCTTSEECCEEECC--SSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCC
T ss_pred eECCCCCeEEEEEEe--CcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCC
Confidence 688999999999998 5433 5788988 1211 111 145555544 45678999999999
Q ss_pred CCEEEEEEEEcC
Q psy2166 761 DTGVYTCRATNK 772 (805)
Q Consensus 761 d~G~Y~C~a~N~ 772 (805)
|++.|.|.....
T Consensus 89 DTAvYyCAr~~~ 100 (116)
T d1fn4b1 89 DTGTYYCTRDLY 100 (116)
T ss_dssp CCEEEEEEEECS
T ss_pred CCEEEEEEeecC
Confidence 999999975443
|
| >d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.24 E-value=0.0005 Score=54.45 Aligned_cols=69 Identities=14% Similarity=0.233 Sum_probs=48.5
Q ss_pred ccCCCCeEEEEEEEeecCCCCeEEEEEE--CCEE------cc---C----------CCCeEEEee--CcEEEEEEcCCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQTMTVEFLY--NGKP------IE---A----------SHRIRTVHA--FGMVVLEILGTKI 759 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p~~~v~W~~--~g~~------l~---~----------~~~~~~~~~--~~~~~L~i~~v~~ 759 (805)
.+++|++++|+|.+.++..-.-.+.|++ -|+. +. . ..|+.+..| .....|+|++++.
T Consensus 11 ~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~~~L~~ 90 (121)
T d1nfdf1 11 LVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRLRV 90 (121)
T ss_dssp EECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEEESCCG
T ss_pred eECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeeceecccCC
Confidence 6899999999999993222335678988 2211 11 1 135555554 4577899999999
Q ss_pred CCCEEEEEEEEc
Q psy2166 760 EDTGVYTCRATN 771 (805)
Q Consensus 760 ~d~G~Y~C~a~N 771 (805)
+|++.|.|....
T Consensus 91 eDTAvYYCAr~~ 102 (121)
T d1nfdf1 91 DDTAIYYCTRAG 102 (121)
T ss_dssp GGCEECEEEEEE
T ss_pred CcceEEEEeccC
Confidence 999999997643
|
| >d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Engineered (including hybrid species)
Probab=97.24 E-value=0.00094 Score=54.27 Aligned_cols=67 Identities=19% Similarity=0.260 Sum_probs=48.6
Q ss_pred ccCCCCeEEEEEEEeecCCC----CeEEEEEEC--CE--------------EccC--CCCeEEEee--CcEEEEEEcCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQ----TMTVEFLYN--GK--------------PIEA--SHRIRTVHA--FGMVVLEILGTK 758 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p----~~~v~W~~~--g~--------------~l~~--~~~~~~~~~--~~~~~L~i~~v~ 758 (805)
.+++|++++|+|.+. |.. ...+.|++- |+ ...+ ..|+.+..+ ...+.|+|++++
T Consensus 11 ~vkpg~Sl~LsC~~S--G~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~ 88 (132)
T d1tjgh1 11 LVKPTQTLTLTCSFS--GFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVS 88 (132)
T ss_dssp EECTTCCEEEEEEEE--SSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred eECCCCCeEEEEEEe--CCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCC
Confidence 689999999999998 543 246889971 11 1111 256666554 456789999999
Q ss_pred CCCCEEEEEEEEc
Q psy2166 759 IEDTGVYTCRATN 771 (805)
Q Consensus 759 ~~d~G~Y~C~a~N 771 (805)
.+|++.|.|....
T Consensus 89 ~eDtAvYYCAr~~ 101 (132)
T d1tjgh1 89 PVDTATYFCAHRR 101 (132)
T ss_dssp GGGCEEEEEEEEC
T ss_pred cccceEEEEEEec
Confidence 9999999998654
|
| >d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: Immunoglobulin heavy chain variable domain, VH species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]
Probab=97.24 E-value=0.00054 Score=54.83 Aligned_cols=66 Identities=15% Similarity=0.316 Sum_probs=46.9
Q ss_pred ccCCCCeEEEEEEEeecCCC----CeEEEEEE--CCEE--------------ccC--CCCeEEEee--CcEEEEEEcCCC
Q psy2166 703 NLSEGEIAHFEASLIPVGDQ----TMTVEFLY--NGKP--------------IEA--SHRIRTVHA--FGMVVLEILGTK 758 (805)
Q Consensus 703 ~v~~G~~~~l~C~~~~~g~p----~~~v~W~~--~g~~--------------l~~--~~~~~~~~~--~~~~~L~i~~v~ 758 (805)
.+++|++++|+|.+. |.. ...+.|+| -|+. ..+ ..|+.+..+ .....|+|++++
T Consensus 11 ~vkpg~sv~LsC~~S--G~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~ 88 (123)
T d1r0ah1 11 IVQPSQPFRLTCTFS--GFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVE 88 (123)
T ss_dssp EECTTCCEEEEEEEE--SSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCC
T ss_pred eECCCCCeEEEEEEc--CCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecc
Confidence 688999999999998 542 24678987 1111 111 135666554 346789999999
Q ss_pred CCCCEEEEEEEE
Q psy2166 759 IEDTGVYTCRAT 770 (805)
Q Consensus 759 ~~d~G~Y~C~a~ 770 (805)
.+|++.|.|...
T Consensus 89 ~eDsAvYyCAr~ 100 (123)
T d1r0ah1 89 TADTAIYYCAQS 100 (123)
T ss_dssp GGGCEEEEEEEE
T ss_pred cccceEEeeccc
Confidence 999999999753
|
| >d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Class I MHC, alpha-3 domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.00027 Score=54.88 Aligned_cols=63 Identities=10% Similarity=0.141 Sum_probs=41.6
Q ss_pred CCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeE--EEeeCc----EEEEEEcCCCCCCCEEEEEEEEcC
Q psy2166 707 GEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIR--TVHAFG----MVVLEILGTKIEDTGVYTCRATNK 772 (805)
Q Consensus 707 G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~--~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~ 772 (805)
++.++|.|.+.++-.....|+|.+||+.+....... ...+++ .+.|.+.. ++...|+|++...
T Consensus 15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~---~~~~~ytC~V~H~ 83 (95)
T d1k5na1 15 DHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPS---GEEQRYTCHVQHE 83 (95)
T ss_dssp TTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEET---TCGGGEEEEEECT
T ss_pred CCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEc---CCCCEEEEEEEEC
Confidence 568999999996655667999999999887542211 122222 23455543 3445799999875
|
| >d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: V set domains (antibody variable domain-like) domain: T-cell antigen receptor species: Mouse (Mus musculus), beta-chain [TaxId: 10090]
Probab=97.20 E-value=0.00038 Score=56.13 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=46.4
Q ss_pred CCCceecCCCcEEEEEEEecCCCCCceEEEEEC--CEecC----------------CCCceEEEecCcEEEEEEcccccC
Q psy2166 73 KPEFKLGEAQPLHLEAQVEPKNDPNLKIEWIFN--GKPLE----------------LGSRFKTTADFGFVTLDLTEVYDR 134 (805)
Q Consensus 73 ~~~~~v~~G~~v~L~C~~~~~~~p~~~v~W~k~--g~~i~----------------~~~~~~~~~~~~~~~L~I~~~~~~ 134 (805)
|..+.+.+|++++|.|.... .....+.|||- |+.+. ...++...... ...|.|..++.+
T Consensus 8 P~~~~~~~G~~vtL~C~~~~--~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~-~~~l~l~~~~~~ 84 (112)
T d1fo0b_ 8 PRWRLVPRGQAVNLRCILKN--SQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVT-DTELRLQVANMS 84 (112)
T ss_dssp CSEEECCTTCCEEEEEEESC--TTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEE-TTEEEEEEESCC
T ss_pred CCeEEECCCCCEEEEEEEec--CCCCcEEEEeECCCCCccccceecccccccccccccccccccccc-ccEEEEecCCcc
Confidence 44567889999999999873 33357899983 32211 11234333221 136888889999
Q ss_pred CCeEEEEEEEe
Q psy2166 135 DQGIYTCRAWN 145 (805)
Q Consensus 135 D~G~Y~C~a~n 145 (805)
|++.|.|....
T Consensus 85 dsa~Y~Ca~~~ 95 (112)
T d1fo0b_ 85 QGRTLYCTCSA 95 (112)
T ss_dssp SCEEEEEEEES
T ss_pred CCccEEEEEec
Confidence 99999999754
|
| >d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: Immunoglobulin family: C1 set domains (antibody constant domain-like) domain: Immunoglobulin light chain kappa constant domain, CL-kappa species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.00035 Score=55.79 Aligned_cols=83 Identities=12% Similarity=0.025 Sum_probs=51.1
Q ss_pred CCeeeecCCcccccCCCCeEEEEEEEeecCCCCeEEEEEECCEEccCCCCeEE---EeeCc----EEEEEEcCCCCCCCE
Q psy2166 691 PPQFTSEFQHLSNLSEGEIAHFEASLIPVGDQTMTVEFLYNGKPIEASHRIRT---VHAFG----MVVLEILGTKIEDTG 763 (805)
Q Consensus 691 ~P~~~~~~~~~~~v~~G~~~~l~C~~~~~g~p~~~v~W~~~g~~l~~~~~~~~---~~~~~----~~~L~i~~v~~~d~G 763 (805)
+|.+...+... ....++.++|.|.+.++......|+|.+||..+........ ...+| .+.|.|..-..+...
T Consensus 5 ~P~V~l~~Ps~-~~~~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~ 83 (107)
T d1c5cl2 5 APSVFIFPPSD-EQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHK 83 (107)
T ss_dssp CCEEEEECCCH-HHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCC
T ss_pred CCEEEEECCCH-HHhcCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCC
Confidence 56555533322 22346789999999954333469999999987765422111 11122 245777655545556
Q ss_pred EEEEEEEcCCc
Q psy2166 764 VYTCRATNKWG 774 (805)
Q Consensus 764 ~Y~C~a~N~~G 774 (805)
.|+|.|.+..-
T Consensus 84 ~ytC~V~H~~~ 94 (107)
T d1c5cl2 84 VYACEVTHQGL 94 (107)
T ss_dssp EEEEEEECTTC
T ss_pred EEEEEEEECCC
Confidence 89999998653
|