Psyllid ID: psy2168

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510------

MGSVHAKEIPSQPYDELDSDPNDAMLGHVMVAPARVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATPEHGYEITFRVKELKRYRAGVTTSIGNNEGSVVVWGKMPNLYGRGELAEMSYVYGTKSLVYNLTLRKPFFGPIDSMLSGSLLRQVNEMPASSCKLLEQGLILDYAILFPTIKNSIEWNGLIREIQPASRGTPFAIRESAGYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLHRVVHRYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLFQVNYPLGPYITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKSGGSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLGEELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITFI

ccccccccccccccccccccccccEEEEEccccEEEEEEEEEccccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccEEEEEEEEEccEEEEEEEEEEEcccEEEEEEEEEEcccccccEEEEEEEEEEEEEEEEEEEEEccccccccEEEEEEEEEEEEccccccEEEEcEEEEEEEEEccccccEEEEccEEEEEEccccccccEEccccccccccccEEEEEEcccccccccccccEEcccEEEcccccccccccccHHHHHHccccEEEEEEEEEEEEcccccccccccccEEEEEEEEEEcccccEEEEEEEEEEEEEccccEEEEEEEEEEEEEccccccccccccEEEccccccccccccccccccccccccccEEEEEEEEEEEEEccccccccccccccEEEEEEEEcccccccccccccHHHHHcccccEEEEEEEEEEEccEEEEEEEEEEEEcccccccccccEEEEEEccccc

cccEEEEEEcccccccccccEEEEEEEEccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccEEEEEEEEEEccccEEEEEEEEEccccEEEEEEEcccccccccEEEEEEEccccEEEEEEEEccccccccccEcccEEEEEEccccccccccccccccccccccccccccHcccccccEcEcccEEEccccccccccEEEccEEEEcccccccccccccccccccccccHccccccccccccccccHHHcccccccEEEEEEEEEcccccccccccccEEEEEEEEEEcccccEEEEEEEccEEEccccccEEEEEEEEEEEccccccccccccHHHEEccccccEccccccccccccccccccccHEEEEEEEEEcccccccccccccccEEEEEEEEEccccEccccccccccccccHHHHEEHHHHEEHEEHcccccEEEEEEEEccccccccEEEEEEEEcccccc

mgsvhakeipsqpydeldsdpndamlghvmvaparvdrvkvegigrtyddiitdsikqteifksstfgQLIFQCHEVRNQLERLQCFQQVQIEidaskgpdatpehgyEITFRVKELKRYRAGVTtsignnegsvvvwgkmpnlygrgelaEMSYVYGTKSLVYNltlrkpffgpidsmlsgsllrqvnempassckLLEQGLILDYAIlfptiknsiewnglireiqpasrgtpfairesagyTLKSSLKFITSldkrddkilprhgqfcqgsvefaglggdvgfqkYSSLHRVVHRYTLKSSLKFITSldkrddkilprhgqfcqgsvefaglggdvgfqKYSSLFQvnyplgpyitAQASLdagllgsfsqdktftlcdrfflggplglrgfahygigpksggsslggtvywqgayhiytplpftkptkgsfsdnfrlnffanagsiqdmSASEITSKWRKLGEELRISYGIGLAIRFAGLARVEINycfpysyqrddsvvpgmqfgfgitfi

mgsvhakeipsqpydeldsDPNDAMLGHVMVaparvdrvkvegigrtyddiitdsiKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDaskgpdatpehgYEITFRVKELKRYRAGVttsignnegsvvvWGKMPNLYGRGELAEMSYVYGTKSLVYNLTLRKPFFGPIDSMLSGSLLRQVNEMPASSCKLLEQGLILDYAILFPTIKNSIEWNGLIREIQPASRGTPFAIRESAGYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLHRVVHRYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLFQVNYPLGPYITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKSGGSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLGEELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITFI

MGSVHAKEIPSQPYDELDSDPNDAMLGHVMVAPARVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATPEHGYEITFRVKELKRYRAGVTTSIGNNEGSVVVWGKMPNLYGRGELAEMSYVYGTKSLVYNLTLRKPFFGPIDSMLSGSLLRQVNEMPASSCKLLEQGLILDYAILFPTIKNSIEWNGLIREIQPASRGTPFAIRESAGYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLHRVVHRYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLFQVNYPLGPYITAQASLDAGLLGSFSQDKTFTLCDrfflggplglrgfAHYGIGPKSGGSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLGEELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITFI

*************************LGHVMVAPARVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDAS*******EHGYEITFRVKELKRYRAGVTTSIGNNEGSVVVWGKMPNLYGRGELAEMSYVYGTKSLVYNLTLRKPFFGPIDSMLSGSLLRQVNEMPASSCKLLEQGLILDYAILFPTIKNSIEWNGLIREIQPASRGTPFAIRESAGYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLHRVVHRYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLFQVNYPLGPYITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKSGGSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLGEELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITF*

***VHAK***************DAMLGHVMVAPARVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQI*************HGYEITFRVKELKRYRAGVTTSIGNNEGSVVVWGKMPNLYGRGELAEMSYVYGTKSLVYNLTLRKPFFGPIDSMLSGSLLRQVNEMPASSCKLLEQGLILDYAILFPTIKNSIEWNGLIREIQPASRGTPFAIRESAGYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLHRVVHRYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLFQVNYPLGPYITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKSGGSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLGEELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITFI

**SVHAKEIPSQPYDELDSDPNDAMLGHVMVAPARVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATPEHGYEITFRVKELKRYRAGVTTSIGNNEGSVVVWGKMPNLYGRGELAEMSYVYGTKSLVYNLTLRKPFFGPIDSMLSGSLLRQVNEMPASSCKLLEQGLILDYAILFPTIKNSIEWNGLIREIQPASRGTPFAIRESAGYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLHRVVHRYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLFQVNYPLGPYITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKSGGSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLGEELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITFI

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		516	2.2.26 [Sep-21-2011]
Q5U3I0		469	Sorting and assembly mach	yes	N/A	0.879	0.968	0.355	2e-79
Q7ZWS5		468	Sorting and assembly mach	N/A	N/A	0.875	0.965	0.355	4e-77
Q6PA35		468	Sorting and assembly mach	N/A	N/A	0.879	0.970	0.350	5e-73
Q6P806		468	Sorting and assembly mach	yes	N/A	0.879	0.970	0.349	2e-72
Q803G5		469	Sorting and assembly mach	no	N/A	0.875	0.963	0.335	4e-68
Q9V784		443	SAM50-like protein CG7639	yes	N/A	0.800	0.932	0.289	4e-56
Q6AXV4		469	Sorting and assembly mach	yes	N/A	0.418	0.460	0.440	6e-44
Q9Y512		469	Sorting and assembly mach	yes	N/A	0.544	0.599	0.361	9e-44
Q8BGH2		469	Sorting and assembly mach	yes	N/A	0.552	0.607	0.36	1e-43
Q2HJ55		469	Sorting and assembly mach	yes	N/A	0.540	0.594	0.375	6e-41

>sp\|Q5U3I0\|SAM5B_DANRE Sorting and assembly machinery component 50 homolog B OS=Danio rerio GN=samm50b PE=2 SV=1	Back alignment and function desciption

 Score =  296 bits (758), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 189/531 (35%), Positives = 272/531 (51%), Gaps = 77/531 (14%)

Query: 1   MGSVHAKEIPSQPYDELDSDPN-DAMLGHVMVAPAR------------VDRVKVEGIGRT 47
           MG+VHA+ + S P    D   N D M   VM A               V  V +EG+GRT
Sbjct: 1   MGTVHARSMDSYPMYGRDLGVNTDDM--EVMEAVQETKQEVLENKDVVVQHVNIEGLGRT 58

Query: 48  YDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATPEHG 107
            +D +   I  +++F +    +++ + HE R +L RL  F+ V++ ID S+G DA P +G
Sbjct: 59  KEDYLGYEI--SDVFTARNLVEVMRKSHEARQRLLRLGIFRDVEVVIDISEGADALP-NG 115

Query: 108 YEITFRVKELKRYRAGVTTSIGNNEGSVVVWGKMPNLYGRGELAEMSYVYGTKSLVYNLT 167
            ++TF V ELKR      T +GNNEGS+V+  K+PN+ GRGE     + YGTK   Y L+
Sbjct: 116 LDVTFEVTELKRLTGSYNTMVGNNEGSMVLGIKLPNMLGRGEKLTFQFSYGTKETSYGLS 175

Query: 168 LRKPFFGPIDSMLSGSLLRQVNEMPASSCKLLEQGLILDYAILFPTIKNSIEWNGLIREI 227
             KP  G  +   + +L +   + P SS K  ++G+  + ++      ++++W G+ RE+
Sbjct: 176 FFKPQSGYFERNFTVNLYKVTGQFPWSSLKETDRGVSTELSLPLWMTDHTLKWEGVWREL 235

Query: 228 QPASRGTPFAIRESAGYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAG-LGGDVGF 286
              +R   FA+RE +G+TLKS+L     +D R+  ILPR G   + + E AG  GGD  F
Sbjct: 236 GCLARSASFAVREESGHTLKSALSHTMVVDTRNSAILPRKGALLRINQELAGYTGGDANF 295

Query: 287 QKYSSLHRVVHRYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSS 346
            K                          +D  L  + QF  GSV  A L G         
Sbjct: 296 LK--------------------------EDVELQLNKQFIWGSVLSASLWGG-------- 321

Query: 347 LFQVNYPLGPYITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKSGG 406
              + YPLG   T                   ++ DRF+LGGP  +RGF  Y IGP+S G
Sbjct: 322 ---MIYPLGAQPT-------------------SIADRFYLGGPTSVRGFGMYSIGPQSEG 359

Query: 407 SSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASE-ITSKWRKL 465
             LGG  YW G  H+YTPLPF +  KG  +D FR +FF NAG+I +++  E   +  +KL
Sbjct: 360 DYLGGEAYWAGGLHLYTPLPF-RSNKGGLADLFRTHFFLNAGNICNLNYGEGPRAHLQKL 418

Query: 466 GEELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITFI 516
            E +R SYG G+ +R   +AR+E+NYCFP   Q  D +  G+QFG GI F+
Sbjct: 419 AECIRWSYGAGIILRLGNIARLELNYCFPMGVQSGDRICDGVQFGAGIRFL 469

May be required for the assembly pathway of mitochondrial outer membrane proteins.
Danio rerio (taxid: 7955)

>sp\|Q7ZWS5\|SAM5A_XENLA Sorting and assembly machinery component 50 homolog A OS=Xenopus laevis GN=samm50-a PE=2 SV=1	Back alignment and function description

>sp\|Q6PA35\|SAM5B_XENLA Sorting and assembly machinery component 50 homolog B OS=Xenopus laevis GN=samm50-b PE=2 SV=1	Back alignment and function description

>sp\|Q6P806\|SAM50_XENTR Sorting and assembly machinery component 50 homolog OS=Xenopus tropicalis GN=samm50 PE=2 SV=1	Back alignment and function description

>sp\|Q803G5\|SAM5A_DANRE Sorting and assembly machinery component 50 homolog A OS=Danio rerio GN=samm50a PE=2 SV=1	Back alignment and function description

>sp\|Q9V784\|SAM50_DROME SAM50-like protein CG7639 OS=Drosophila melanogaster GN=CG7639 PE=2 SV=2	Back alignment and function description

>sp\|Q6AXV4\|SAM50_RAT Sorting and assembly machinery component 50 homolog OS=Rattus norvegicus GN=Samm50 PE=1 SV=1	Back alignment and function description

>sp\|Q9Y512\|SAM50_HUMAN Sorting and assembly machinery component 50 homolog OS=Homo sapiens GN=SAMM50 PE=1 SV=3	Back alignment and function description

>sp\|Q8BGH2\|SAM50_MOUSE Sorting and assembly machinery component 50 homolog OS=Mus musculus GN=Samm50 PE=1 SV=1	Back alignment and function description

>sp\|Q2HJ55\|SAM50_BOVIN Sorting and assembly machinery component 50 homolog OS=Bos taurus GN=SAMM50 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		516
189238341		467	PREDICTED: similar to sorting and assemb	0.883	0.976	0.368	3e-92
346469373		452	hypothetical protein [Amblyomma maculatu	0.866	0.988	0.370	1e-90
270008577		498	hypothetical protein TcasGA2_TC015112 [T	0.875	0.907	0.365	2e-90
442757597		452	Putative sorting and assembly machinery	0.866	0.988	0.370	6e-90
332372716		471	unknown [Dendroctonus ponderosae]	0.877	0.961	0.353	3e-86
321461476		434	hypothetical protein DAPPUDRAFT_110732 [	0.821	0.976	0.364	4e-84
427789539		452	Putative sorting and assembly machinery	0.866	0.988	0.349	2e-80
332022973		454	Sorting and assembly machinery component	0.817	0.929	0.349	1e-78
395819600		469	PREDICTED: sorting and assembly machiner	0.875	0.963	0.356	3e-78
322792908		532	hypothetical protein SINV_15569 [Solenop	0.817	0.793	0.349	5e-78

>gi\|189238341\|ref\|XP_966817.2\| PREDICTED: similar to sorting and assembly machinery component 50 homolog [Tribolium castaneum]	Back alignment and taxonomy information

 Score =  345 bits (885), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 194/527 (36%), Positives = 286/527 (54%), Gaps = 71/527 (13%)

Query: 1   MGSVHAKE------IPSQPYDELDSDP---NDAMLGHVMVAPARVDRVKVEGIGRTYDDI 51
           MG+VHAK       +P+ P + + S+P    D     +    ARVD++ V+G+ RT DDI
Sbjct: 1   MGTVHAKSEENAPILPTIPQEHIKSEPAQHQDQREIFLDGVKARVDKIHVDGLARTKDDI 60

Query: 52  ITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATPEHGYEIT 111
           I D I+  ++FK++ F  ++ + H  R +L+ L CF+ + + ID SKG  A+P+ G E+T
Sbjct: 61  IEDCIR--DLFKAADFQDVLLRAHRARLKLDELGCFKNIAVFIDTSKGQGASPD-GLEVT 117

Query: 112 FRVKELKRYRAGVTTSIGNNEGSVVVWGKMPNLYGRGELAEMSYVYGTKSLV-YNLTLRK 170
           F V E KR   GVTT +GNNEG++++  + PNL+GRGE  ++ Y +G+K    +N+   K
Sbjct: 118 FNVTEHKRVTGGVTTQVGNNEGALLIGLRAPNLFGRGERVQLEYSHGSKRTTNFNVAFIK 177

Query: 171 PFFGPIDSMLSGSLLRQVNEMPASSCKLLEQGLILDYAILFPT-IKNSIEWNGLIREIQP 229
           P  G    M + S+ +   E P S  K L++GL+ D+       IK++I+W   IR++  
Sbjct: 178 PMRGKYRPMFTTSVFQSNAEWPVSGYKQLDRGLLFDFGFHSTALIKHNIQWEAAIRDLAV 237

Query: 230 ASRGTPFAIRESAGYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKY 289
            SR T F +RE AG +LKS+L+ I S+D RDD I P  G   Q + E AGLGGDVGF   
Sbjct: 238 LSRNTSFEVREQAGLSLKSALRHIISIDLRDDLIFPTSGSLLQLTSEVAGLGGDVGF--- 294

Query: 290 SSLHRVVHRYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLFQ 349
                      LK+                     F QG                     
Sbjct: 295 -----------LKNEF-------------------FIQG--------------------- 303

Query: 350 VNYPLGPYITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKSGGSSL 409
            NY L      Q +L  G +   S D    + D ++LGGPL LRGF   G+GP S G +L
Sbjct: 304 -NYSLVEDFVLQGTLSGGFMRGLSNDMKIGMSDMYYLGGPLTLRGFQMRGVGPHSEGDAL 362

Query: 410 GGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLGEEL 469
           G   YW    H+++PLPF +P +G F D F+ + F  AG++ D S S+  +    L   +
Sbjct: 363 GSMAYWASGLHLFSPLPF-RPGRGGFGDLFKTHLFITAGNVGDFSLSD-KNLIDSLTASV 420

Query: 470 RISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGFGITFI 516
           RISYG+G+A+R   +ARVE+NYCFP+++++ D + PG+QFG G+ F+
Sbjct: 421 RISYGVGIALRLGNMARVEVNYCFPHTFEKGDQIHPGIQFGIGVQFV 467

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|346469373\|gb\|AEO34531.1\| hypothetical protein [Amblyomma maculatum]	Back alignment and taxonomy information

>gi\|270008577\|gb\|EFA05025.1\| hypothetical protein TcasGA2_TC015112 [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|442757597\|gb\|JAA70957.1\| Putative sorting and assembly machinery component 50 [Ixodes ricinus]	Back alignment and taxonomy information

>gi\|332372716\|gb\|AEE61500.1\| unknown [Dendroctonus ponderosae]	Back alignment and taxonomy information

>gi\|321461476\|gb\|EFX72508.1\| hypothetical protein DAPPUDRAFT_110732 [Daphnia pulex]	Back alignment and taxonomy information

>gi\|427789539\|gb\|JAA60221.1\| Putative sorting and assembly machinery component 50 [Rhipicephalus pulchellus]	Back alignment and taxonomy information

>gi\|332022973\|gb\|EGI63239.1\| Sorting and assembly machinery component 50-like protein [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|395819600\|ref\|XP_003783170.1\| PREDICTED: sorting and assembly machinery component 50 homolog [Otolemur garnettii]	Back alignment and taxonomy information

>gi\|322792908\|gb\|EFZ16741.1\| hypothetical protein SINV_15569 [Solenopsis invicta]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		516
UNIPROTKB\|E1C8A2		469	SAMM50 "Uncharacterized protei	0.540	0.594	0.359	2.8e-80
ZFIN\|ZDB-GENE-040426-806		469	samm50 "sorting and assembly m	0.548	0.603	0.357	8.4e-79
ZFIN\|ZDB-GENE-041114-30		469	samm50l "sorting and assembly	0.552	0.607	0.35	3.6e-78
UNIPROTKB\|Q2HJ55		469	SAMM50 "Sorting and assembly m	0.540	0.594	0.379	5.7e-43
MGI\|MGI:1915903		469	Samm50 "sorting and assembly m	0.548	0.603	0.374	5.2e-42
UNIPROTKB\|Q9Y512		469	SAMM50 "Sorting and assembly m	0.540	0.594	0.375	5.2e-42
UNIPROTKB\|E2QSZ0		469	SAMM50 "Uncharacterized protei	0.548	0.603	0.370	6.6e-42
UNIPROTKB\|F6UPR4		456	SAMM50 "Uncharacterized protei	0.548	0.620	0.370	6.6e-42
RGD\|1303219		469	Samm50 "sorting and assembly m	0.548	0.603	0.367	2.8e-41
UNIPROTKB\|G3MZZ3		469	SAMM50 "Sorting and assembly m	0.540	0.594	0.375	1.8e-39

UNIPROTKB\|E1C8A2 SAMM50 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

 Score = 428 (155.7 bits), Expect = 2.8e-80, Sum P(2) = 2.8e-80
 Identities = 110/306 (35%), Positives = 165/306 (53%)

Query:     1 MGSVHAKEIPSQPYDELDSDPNDAMLGH----VMVAP-AR----------VDRVKVEGIG 45
             MG+VHA+ +   P     S P+   LG     V V P A+          V  V  +G+G
Sbjct:     1 MGTVHARSLEPLPA----SGPDFGALGEEAELVEVEPEAKQEILENKDVVVQHVHFDGLG 56

Query:    46 RTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDATPE 105
             RT DDII   I   ++FK+     ++ + HE R +L RL  F+QV++ ID  +G DA P 
Sbjct:    57 RTRDDIIMYEI--ADVFKAKNLIDVMRKSHEAREKLLRLGIFRQVEVLIDTCQGDDALP- 113

Query:   106 HGYEITFRVKELKRYRAGVTTSIGNNEGSVVVWGKMPNLYGRGELAEMSYVYGTKSLVYN 165
             +G ++TF V EL+R      T +GNNEGS+V+  K PNL GR E     + YGTK   Y 
Sbjct:   114 NGLDVTFEVTELRRLTGSYNTMVGNNEGSMVLGLKFPNLLGRAEKVTFQFSYGTKETSYG 173

Query:   166 LTLRKPFFGPIDSMLSGSLLRQVNEMPASSCKLLEQGLILDYAILFPTIK--NSIEWNGL 223
             L+  KP  G  +   S +L +   + P SS +  ++G+  ++   FP  K  ++++W G+
Sbjct:   174 LSFFKPQPGNFERNFSVNLYKVTGQFPWSSLRETDRGISTEFN--FPIWKTNHTLKWEGV 231

Query:   224 IREIQPASRGTPFAIRESAGYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGL-GG 282
              RE+   +R   F++RE +G++LKSS+     +D R+  ILP+ G   + + E AG  GG
Sbjct:   232 WRELGCLARTASFSVREESGHSLKSSISHAMVIDSRNSSILPKRGALLKINQELAGYTGG 291

Query:   283 DVGFQK 288
             DV F K
Sbjct:   292 DVSFLK 297

GO:0001401 "mitochondrial sorting and assembly machinery complex" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045040 "protein import into mitochondrial outer membrane" evidence=IEA

ZFIN\|ZDB-GENE-040426-806 samm50 "sorting and assembly machinery component 50 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-041114-30 samm50l "sorting and assembly machinery component 50 homolog, like" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2HJ55 SAMM50 "Sorting and assembly machinery component 50 homolog" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:1915903 Samm50 "sorting and assembly machinery component 50 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y512 SAMM50 "Sorting and assembly machinery component 50 homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QSZ0 SAMM50 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F6UPR4 SAMM50 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

RGD\|1303219 Samm50 "sorting and assembly machinery component 50 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|G3MZZ3 SAMM50 "Sorting and assembly machinery component 50 homolog" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5U3I0	SAM5B_DANRE	No assigned EC number	0.3559	0.8798	0.9680	yes	N/A
Q9V784	SAM50_DROME	No assigned EC number	0.2892	0.8003	0.9322	yes	N/A
Q6P806	SAM50_XENTR	No assigned EC number	0.3490	0.8798	0.9700	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		516
COG4775		766	COG4775, COG4775, Outer membrane protein/protectiv	8e-36
pfam01103		317	pfam01103, Bac_surface_Ag, Surface antigen	1e-27
TIGR03303		741	TIGR03303, OM_YaeT, outer membrane protein assembl	7e-26
COG0729		594	COG0729, COG0729, Outer membrane protein [Cell env	1e-06

>gnl\|CDD\|227116 COG4775, COG4775, Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

 Score =  141 bits (358), Expect = 8e-36
 Identities = 115/484 (23%), Positives = 177/484 (36%), Gaps = 67/484 (13%)

Query: 36  VDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEID 95
           V R+++ G  RT D +I   ++  E      F + + Q  +   +L RL  F+ V I+  
Sbjct: 346 VRRIRIRGNTRTKDYVIRREMRLKE---GDVFNRKLVQRGK--RRLRRLGYFESVNIDTA 400

Query: 96  ASKGPDATPEHGYEITFRVKELKRYRAGVTTSIGNNEG-SVVVWGKMPNLYGRGELAEMS 154
              G D       ++   VKE            G++ G S        N  G G+   ++
Sbjct: 401 PGSGSD-----QVDVVVDVKERSTGSINFGLGYGSDSGLSGFASLSERNFLGTGQSLSLN 455

Query: 155 YVYGTKSLVYNLTLRKPFFGPIDSMLSGSLLRQVNEMPASSCKLLEQGLILDYAILFPTI 214
              G K   Y+L+   P+F      L  +L     +   +           D A     +
Sbjct: 456 ANLGDKQTSYSLSFTDPYFLDDRVSLGFNLFSNRYDTFDA-----------DTANDSYRV 504

Query: 215 KNSIEWNGLIREIQPASRGTPFAIRESAGYTLKSSLKFITSLDKRDDKILPRHGQFCQGS 274
           K               + G    +      T   SL      ++    +L +       S
Sbjct: 505 K---------------TYG--GGVSLGRPITENLSLGLGYGYEQNSLSLLNKSPPDEYAS 547

Query: 275 VEFAGLGGDVGFQKYSSLHRVVHRYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAG 334
           +     GG                 +  SSL    + D RD+ + P  G +   + E AG
Sbjct: 548 LGVKLQGGK----------------SDLSSLSLGWTYDTRDNALFPTKGSYLSLTQEVAG 591

Query: 335 LGGDVGFQKYSSLFQVNYPLGPYI-TAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLR 393
           LGGD+ + K        YPL  YI T     + G    +   K   + +RF+LGG   +R
Sbjct: 592 LGGDIKYYKLELDGSKYYPLTDYIFTLSLRGEVGYGKGYG-TKLLPIYERFYLGGSNSVR 650

Query: 394 GFAHYGIGPKSG-GSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQD 452
           GF   G+GPK G   +LGGT Y+  +  +  PLP             R   F +AGS+ +
Sbjct: 651 GFESGGLGPKDGYTDALGGTSYFVASAELRFPLPKVIG------SGVRGALFFDAGSVWN 704

Query: 453 MSASEITSK-WRKLGEELRISYGIGLAIRFAGLARVEINYCFPYSYQRDDSVVPGMQFGF 511
                 T + +   G ELR S G+GL    + L  +  +Y FP   +  D      QFG 
Sbjct: 705 TGTDPSTVRNFYGSGSELRASAGVGLRWA-SPLGPLRFDYAFPIKKKEGD-DTQRFQFGL 762

Query: 512 GITF 515
           G  F
Sbjct: 763 GTRF 766

Length = 766

>gnl\|CDD\|216300 pfam01103, Bac_surface_Ag, Surface antigen	Back alignment and domain information

>gnl\|CDD\|234165 TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein	Back alignment and domain information

>gnl\|CDD\|223801 COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		516
COG4775		766	Outer membrane protein/protective antigen OMA87 [C	100.0
PRK11067		803	outer membrane protein assembly factor YaeT; Provi	100.0
TIGR03303		741	OM_YaeT outer membrane protein assembly complex, Y	100.0
KOG2602\|consensus		457		100.0
TIGR00992		718	3a0901s03IAP75 chloroplast envelope protein transl	100.0
PLN03138		796	Protein TOC75; Provisional	100.0
COG0729		594	Outer membrane protein [Cell envelope biogenesis,	100.0
PF01103		323	Bac_surface_Ag: Surface antigen; InterPro: IPR0001	100.0
COG2831		554	FhaC Hemolysin activation/secretion protein [Intra	99.93
PF03865		404	ShlB: Haemolysin secretion/activation protein ShlB	99.84
PF07244		78	Surf_Ag_VNR: Surface antigen variable number repea	98.28
COG4775		766	Outer membrane protein/protective antigen OMA87 [C	98.12
TIGR03303		741	OM_YaeT outer membrane protein assembly complex, Y	98.07
PRK11067		803	outer membrane protein assembly factor YaeT; Provi	97.6
PLN03138		796	Protein TOC75; Provisional	96.32
TIGR00992		718	3a0901s03IAP75 chloroplast envelope protein transl	93.82
PF08478		69	POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013	93.4
PRK05529		255	cell division protein FtsQ; Provisional	89.79

>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

Probab=100.00  E-value=2.5e-56  Score=482.99  Aligned_cols=418  Identities=25%  Similarity=0.403  Sum_probs=342.4

Q ss_pred             ccccccCCccEEEEEEEEECCCccchHHHHhhcccccccccccHHHHHHHHHHHHHhhhcCCcceeeEEEEecCCCCCCC
Q psy2168          24 AMLGHVMVAPARVDRVKVEGIGRTYDDIITDSIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGPDAT  103 (516)
Q Consensus        24 ~~~~~~~~~~~~i~~I~v~G~~~t~~~vI~r~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~f~~V~i~~~~~~~~~~~  103 (516)
                      ..+.+.++.+++|++|.|+||.+|+|+||+|+|+++|   |+.|+..+  ++..++||+++|+|++|++.+.|.    ..
T Consensus       334 v~~~V~~g~~~~V~~i~i~gn~rT~D~VIrRE~~~~e---Gd~fn~~~--v~~~~~rL~~lgyF~~V~i~~~~~----~~  404 (766)
T COG4775         334 VVFRVDEGDRVYVRRIRIRGNTRTKDYVIRREMRLKE---GDVFNRKL--VQRGKRRLRRLGYFESVNIDTAPG----SG  404 (766)
T ss_pred             EEEEEEcCCceeeeeeeecCCCccccHHhhhhhhcCC---cchhhHHH--HHHHHHHHHhcCCceeeEEEeccC----CC
Confidence            5667779999999999999999999999999999766   99998633  368999999999999999997653    34


Q ss_pred             CCCcEEEEEEEEecceeeEEEEEeecCcce-EEEEEEeeeccCCCceEEEEEEEeeEEeEEEEEEEeccccCCCCceEEE
Q psy2168         104 PEHGYEITFRVKELKRYRAGVTTSIGNNEG-SVVVWGKMPNLYGRGELAEMSYVYGTKSLVYNLTLRKPFFGPIDSMLSG  182 (516)
Q Consensus       104 ~~~~v~l~i~v~E~~~~~~~~~~~~g~~~g-~~~l~~~~~Nl~G~g~~l~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~  182 (516)
                      + +.|||+|+|+|+++-+++++++|++.+| .+.++++..|++|+|+.+++++..+...+.++++|+.|++...++++++
T Consensus       405 ~-~~vdvvv~VkE~~Tgsi~~G~Gy~s~~gl~~~~s~~e~N~~G~G~~~~~~~~~g~~~~~~~l~ft~P~f~~~~~slg~  483 (766)
T COG4775         405 S-DQVDVVVDVKERSTGSINFGLGYGSDSGLSGFASLSERNFLGTGQSLSLNANLGDKQTSYSLSFTDPYFLDDRVSLGF  483 (766)
T ss_pred             C-CeEEEEEEEEecCceeEEecccccCCCceEEEEEEEEeecCccccEEEEEEEeccceEEEEEEEecccccCCCceeEE
Confidence            4 5899999999999878888888999888 8999999999999999999999999998899999999999999999999


Q ss_pred             EEEEeecc---cCcc--cceeeeeeEEEEEeEeec-CeEEEEEEEEEEEEecCCCCCC-----hHHHHHhhCCCccceeE
Q psy2168         183 SLLRQVNE---MPAS--SCKLLEQGLILDYAILFP-TIKNSIEWNGLIREIQPASRGT-----PFAIRESAGYTLKSSLK  251 (516)
Q Consensus       183 ~~~~~~~~---~~~~--~y~~~~~g~~~~l~~~~~-~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~~  251 (516)
                      +++++..+   ....  +|...+.|+.+++++|+. +++++++|.+.+..+.......     +.....+.++...    
T Consensus       484 ~~f~~~~~~~~~~~~~~~y~~~~~G~~~~lg~pi~e~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  559 (766)
T COG4775         484 NLFSNRYDTFDADTANDSYRVKTYGGGVSLGRPITENLSLGLGYGYEQNSLSLLNKSPPDEYASLGVKLQGGKSDL----  559 (766)
T ss_pred             EeEeeeecccccccccccceEeeccceEEecccccCCceEEEEEEEEEEEeeccccCccccccccccccccCccee----
Confidence            99998762   1233  789999999999999999 7999999999888877532110     0000011111222    


Q ss_pred             EEEEEecCCCCCCCCCcceeeeeeeeecCCCCcccccccccceeeeceeecccceeeeeccccCCCCCCCCCccccceee
Q psy2168         252 FITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLHRVVHRYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVE  331 (516)
Q Consensus       252 ~~~~~d~~d~~~~p~~G~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~p~~G~~~~~~~~  331 (516)
                                                                         ..+.+.++||++|+.++||+|+.++...+
T Consensus       560 ---------------------------------------------------~~~s~~~tyD~rD~~~~Pt~G~~~~~~~e  588 (766)
T COG4775         560 ---------------------------------------------------SSLSLGWTYDTRDNALFPTKGSYLSLTQE  588 (766)
T ss_pred             ---------------------------------------------------EEEEEeEEEcCCCCcCCCCCCeEEeeeeE
Confidence                                                               34455556666666666666666666666


Q ss_pred             eeccCCcceeeeEEEEEEEEEecCCCc-EEEEEeeeeeeecCCCCCccCcccceeeCCCCCccCCCCCCCCcCCC-CCCC
Q psy2168         332 FAGLGGDVGFQKYSSLFQVNYPLGPYI-TAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGFAHYGIGPKSG-GSSL  409 (516)
Q Consensus       332 ~~~~g~d~~f~k~~~~~~~~~~l~~~~-~l~~~~~~G~i~~~~~~~~lp~~e~f~lGG~~~vRGy~~~~igp~~~-~~~~  409 (516)
                      ++++|+|..|+|+++++++|+||.+.. ++.++..+|+..+++. ..+|++|+|++||.++||||..+.+||++. .+.+
T Consensus       589 ~~~~Ggd~~~~K~~~~~~~Y~~l~~~~~~l~~~~~~g~~~~~g~-~~~p~~e~F~~GG~~svRGf~~~~igp~~~~~~~~  667 (766)
T COG4775         589 VAGLGGDIKYYKLELDGSKYYPLTDYIFTLSLRGEVGYGKGYGT-KLLPIYERFYLGGSNSVRGFESGGLGPKDGYTDAL  667 (766)
T ss_pred             EeccCCcceEEEEEEEEEEEEEcccccEEEEEEEEEEEeeccCC-cccccccceeeCCCccccceecCCcCCcccccccc
Confidence            667788899999999999999999865 8899999999999976 458999999999999999999999999984 4789


Q ss_pred             cceeEEEeeEEEEeeCCCCCCCCCCCCCCceEEEEEecccccccCchh-hhhhhhhcccCeeeeeeEEEEEeecceeEEE
Q psy2168         410 GGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASE-ITSKWRKLGEELRISYGIGLAIRFAGLARVE  488 (516)
Q Consensus       410 gG~~~~~~~~El~~~l~~~~~~~~~~~~~l~~~~F~D~G~~~~~~~~~-~~~~~~~~~~~~~~s~G~Gir~~~t~~g~i~  488 (516)
                      ||+.++.+++|++||+++ .+.     ..+++++|+|+|.+|+..... ....+......++.|+|+|++| .+|+|||+
T Consensus       668 GG~~~~~~S~El~fPl~~-~~~-----~~~r~~lF~D~G~v~~~~~~~~~~~~~~~~~~~~r~S~Gvgl~w-~sP~gPlr  740 (766)
T COG4775         668 GGTSYFVASAELRFPLPK-VIG-----SGVRGALFFDAGSVWNTGTDPSTVRNFYGSGSELRASAGVGLRW-ASPLGPLR  740 (766)
T ss_pred             CceEEEEEEEEEEeecCC-CCC-----cceEEEEEEEcccccccCcccccccCCcCcCcceeEEeeeeEEE-ecCCCcEE
Confidence            999999999999999986 331     159999999999999964100 0001111122589999999999 59999999


Q ss_pred             EEEEeeccccCCCCccccEEEEeeecC
Q psy2168         489 INYCFPYSYQRDDSVVPGMQFGFGITF  515 (516)
Q Consensus       489 l~~a~~l~~~~~d~~~~~~~f~ig~~F  515 (516)
                      ++||+|+....+|..++ |+|+||..|
T Consensus       741 ~d~a~pi~~~~~D~~q~-F~F~iG~~F  766 (766)
T COG4775         741 FDYAFPIKKKEGDDTQR-FQFGLGTRF  766 (766)
T ss_pred             EEeecccccCCCCccee-EEEEccccC
Confidence            99999999888888766 999999987

>PRK11067 outer membrane protein assembly factor YaeT; Provisional	Back alignment and domain information

>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein	Back alignment and domain information

>KOG2602\|consensus	Back alignment and domain information

>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family	Back alignment and domain information

>PLN03138 Protein TOC75; Provisional	Back alignment and domain information

>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PF01103 Bac_surface_Ag: Surface antigen; InterPro: IPR000184 The protein sequences of d15 from various strains of Haemophilus influenzae are highly conserved, with only a small variable region identified near the carboxyl terminus of the protein []	Back alignment and domain information

>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	Back alignment and domain information

>PF03865 ShlB: Haemolysin secretion/activation protein ShlB/FhaC/HecB; InterPro: IPR005565 Haemolysin (HlyA) and related toxins are secreted across both the cytoplasmic and outer membranes of Gram-negative bacteria in a process which proceeds without a periplasmic intermediate	Back alignment and domain information

>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus	Back alignment and domain information

>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein	Back alignment and domain information

>PRK11067 outer membrane protein assembly factor YaeT; Provisional	Back alignment and domain information

>PLN03138 Protein TOC75; Provisional	Back alignment and domain information

>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family	Back alignment and domain information

>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain)	Back alignment and domain information

>PRK05529 cell division protein FtsQ; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		516
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 48.7 bits (115), Expect = 4e-06
 Identities = 75/511 (14%), Positives = 127/511 (24%), Gaps = 164/511 (32%)

Query: 12  QPYDELDS-----DPNDAMLGHVMVAPARVDRVKVEGIGRTYDDIITDSIKQTEIFKSST 66
           QPY +L        P   +L   ++           G G+T+  +  D     ++     
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVL-----------GSGKTW--VALDVCLSYKVQCKMD 181

Query: 67  FGQLIF-----QCHEVRNQLERLQCFQQVQIEIDASKGPDATPEHGYEITFRVKELKRYR 121
           F   IF      C+     LE LQ     QI+ + +   D    H   I  R+  ++   
Sbjct: 182 FK--IFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSD----HSSNIKLRIHSIQAEL 234

Query: 122 AGVTTSIGNNEGSVVVWGKMPNLYGRGELAEMSYVYGTKSL-----VYNLTLRKPF-FGP 175
                                    R  L    Y      L     V N      F    
Sbjct: 235 -------------------------RRLLKSKPYE---NCLLVLLNVQNAKAWNAFNLS- 265

Query: 176 IDSMLSGSLLRQVNEMPASSCKLLEQGLILDYAILFPTIKNSIEWNGLIREIQPASRGTP 235
                               CK           IL  T    +        +  A+    
Sbjct: 266 --------------------CK-----------ILLTTRFKQV-----TDFLSAATTTHI 289

Query: 236 FAIRESAGYTLKSSLK-FITSLDKRDDKILPRHGQFCQGS-VEFAGLGGDV-------GF 286
                S   T        +  LD R    LPR  +    +    + +   +         
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQD-LPR--EVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 287 QKYSSLHRVVHRYTLKSSLKFITSLDKR-----------DDKILPRH----------GQF 325
            K+ +  ++     ++SSL  +   + R              I P               
Sbjct: 347 WKHVNCDKLTT--IIESSLNVLEPAEYRKMFDRLSVFPPSAHI-PTILLSLIWFDVIKSD 403

Query: 326 CQGSVEFAGLGGDVGFQKYSSLFQVNYPLGPYITAQASLDAGLLGSFSQDKTF--TLCDR 383
               V            KYS + +        I    S+   L      +     ++ D 
Sbjct: 404 VMVVVN--------KLHKYSLVEKQPKESTISIP---SIYLELKVKLENEYALHRSIVDH 452

Query: 384 FFLGGPLGLRGFAHYGIGPKSGGSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNF 443
           + +      + F    + P      L    Y    +H+       + T   F   F L+F
Sbjct: 453 YNI-----PKTFDSDDLIPP----YLDQYFYSHIGHHLKNIEHPERMT--LFRMVF-LDF 500

Query: 444 -FANAGSIQDMSASEITSKWRKLGEELRISY 473
            F       D +A   +       ++L+  Y
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKF-Y 530

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		516
2qdz_A		554	TPSB transporter FHAC; beta barrel, potra domain,	100.0
3q6b_A		189	Outer membrane protein assembly complex, YAET Pro;	98.76
2x8x_X		235	TLR1789 protein, OMP85; chaperone, TOC75, protein	98.11
2qdf_A		335	OMP85, outer membrane protein assembly factor YAET	97.94
3mc9_A		316	ALR2269 protein; polypeptide transport associated,	97.84
3efc_A		395	OMP85, outer membrane protein assembly factor YAET	97.52
3mc9_A		316	ALR2269 protein; polypeptide transport associated,	97.26
3efc_A		395	OMP85, outer membrane protein assembly factor YAET	97.11
2x8x_X		235	TLR1789 protein, OMP85; chaperone, TOC75, protein	96.93
3q6b_A		189	Outer membrane protein assembly complex, YAET Pro;	96.35
2qdf_A		335	OMP85, outer membrane protein assembly factor YAET	95.65

>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A	Back alignment and structure

Probab=100.00  E-value=9.5e-35  Score=312.88  Aligned_cols=398  Identities=11%  Similarity=0.035  Sum_probs=276.3

Q ss_pred             ccccccCCccEEEEEEEEECCCccchHHHHh---hcccccccccccHHHHHHHHHHHHHhhhcCCcceeeEEEEecCCCC
Q psy2168          24 AMLGHVMVAPARVDRVKVEGIGRTYDDIITD---SIKQTEIFKSSTFGQLIFQCHEVRNQLERLQCFQQVQIEIDASKGP  100 (516)
Q Consensus        24 ~~~~~~~~~~~~i~~I~v~G~~~t~~~vI~r---~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~f~~V~i~~~~~~~~  100 (516)
                      ..|.+.+|   +|++|+|+|+.++++.+|++   ++++.+   |++++.  .++++..++|.+++  .+|++.+.|.   
T Consensus       127 l~i~v~eG---~i~~I~i~G~~~~~~~~l~~~~~~~~~~~---G~~~n~--~~le~~~~~L~~~~--~~v~~~~~p~---  193 (554)
T 2qdz_A          127 LKLKVEWG---RIKGWLIDGKPLEGTRDRMMVFSAMPGWQ---DKVLNV--FDIDQAIYNINNGG--KTGNITIVPA---  193 (554)
T ss_dssp             EEEEEECC---EEEEEEETTEECCSHHHHHHHHHHSTTCT---TCBCCH--HHHHHHHHHHCSSS--EEEEEEEEEC---
T ss_pred             EEEEEEeE---EEEEEEECCCCccchhhhhhhhhhccccC---CCcCCH--HHHHHHHHHHhcCc--hhceEEEecC---
Confidence            44455555   48999999999999999999   887544   888863  33457999999998  7788887653   


Q ss_pred             CCCCCCcEEEEEEEEecceeeEEEEEee-c--C-cce--EEEEEEeeeccCCCceEEEEEEEeeE-------EeEEEEEE
Q psy2168         101 DATPEHGYEITFRVKELKRYRAGVTTSI-G--N-NEG--SVVVWGKMPNLYGRGELAEMSYVYGT-------KSLVYNLT  167 (516)
Q Consensus       101 ~~~~~~~v~l~i~v~E~~~~~~~~~~~~-g--~-~~g--~~~l~~~~~Nl~G~g~~l~~~~~~~~-------~~~~~~~~  167 (516)
                       ..+ +.++|+|.|+|++++.+.++++. +  + ..|  .+.+.+.+.|++|.|+++++++..+.       ..+.++++
T Consensus       194 -~~~-g~~~l~v~v~e~~~~~~~~g~~~~g~g~~~tg~~~~~~~~~~~n~~g~gd~l~~~~~~~~~~~~~~~~~~~~~~~  271 (554)
T 2qdz_A          194 -DEY-GYSYLDLQLQRRALPRVSLGMDNSGPGTPENGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLM  271 (554)
T ss_dssp             -SST-TEEEEEEEEEECCSCEEEEEEEECSCSSSCSSCEEEEEEEEEECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEE
T ss_pred             -CCC-CeeEEEEEEeeCCcEEEEEEEcCCCCCCCCccceEEEEEEEeCCCCCCCcEEEEEEEecCccccCCCCceEEEEE
Confidence             456 89999999999888888888774 3  2 223  68999999999999999999999986       55689999


Q ss_pred             EeccccCCCCceEEEEEEEeecccC------cccceeeeeeEEEEEeEeec---CeEEEEEEEEEEEEecCCCCCChHHH
Q psy2168         168 LRKPFFGPIDSMLSGSLLRQVNEMP------ASSCKLLEQGLILDYAILFP---TIKNSIEWNGLIREIQPASRGTPFAI  238 (516)
Q Consensus       168 ~~~P~~~~~~~~~~~~~~~~~~~~~------~~~y~~~~~g~~~~l~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~  238 (516)
                      |..|+..   +.+.+.+.+...+..      ...|..++.++++.+++++.   ..++++++++.+++......+..  +
T Consensus       272 y~~P~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  346 (554)
T 2qdz_A          272 YSVPLGR---TRLDLQTGYSTYRNLLKTRYGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTR--L  346 (554)
T ss_dssp             EEEEETT---EEEEEEEEEEEEECCCSSSSCCCCCEEEEEEEEEEEEEEEECCSSEEEEEEEEEEEEEEEEECCTTS--C
T ss_pred             EEEEEec---CeEEEEEEEeEEEEEccCCcceEEEEeeEEEEEEEEEEEEEECCCeEEEEEEEEEEEEeeeeeCCcC--c
Confidence            9999863   456666655443211      12466777888999999984   46667777766666643111110  0


Q ss_pred             HHhhCCCccceeEEEEEEecCCCCCCCCCcceeeeeeeeecCCCCcccccccccceeeeceeecccceeeeeccccCCCC
Q psy2168         239 RESAGYTLKSSLKFITSLDKRDDKILPRHGQFCQGSVEFAGLGGDVGFQKYSSLHRVVHRYTLKSSLKFITSLDKRDDKI  318 (516)
Q Consensus       239 ~~~~g~~~~~~~~~~~~~d~~d~~~~p~~G~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~  318 (516)
                        ..+......+..++.|++++    |..+....+....+.                              .+.      
T Consensus       347 --~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~G~------------------------------~~~------  384 (554)
T 2qdz_A          347 --DVSSKHYSDVTVGMQYSTQR----GANAYFGDLSFTRGV------------------------------GVN------  384 (554)
T ss_dssp             --CCEEEEEEEEEEEEEEEEEC----SSEEEEEEEEEEECC------------------------------CC-------
T ss_pred             --cccCceEEEEEEEEEEEEEe----cCeEEEEEEEEEecC------------------------------CCC------
Confidence              01222345677788888764    222222222221110                              000      


Q ss_pred             CCCCCccccceeeeeccCCcceeeeEEEEEEEEEec---CCCcEEEEEeeeeeeecCCCCCccCcccceeeCCCCCccCC
Q psy2168         319 LPRHGQFCQGSVEFAGLGGDVGFQKYSSLFQVNYPL---GPYITAQASLDAGLLGSFSQDKTFTLCDRFFLGGPLGLRGF  395 (516)
Q Consensus       319 ~p~~G~~~~~~~~~~~~g~d~~f~k~~~~~~~~~~l---~~~~~l~~~~~~G~i~~~~~~~~lp~~e~f~lGG~~~vRGy  395 (516)
                             +....+....+++.+|.|+.+++++|+|+   ..++++.+++.+++..     +.+|.+|+|++||.++||||
T Consensus       385 -------a~~~~~~~~~~~~~~f~k~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-----~~lp~~e~f~lGG~~sVRGy  452 (554)
T 2qdz_A          385 -------NGKYAAYDERGPQGNVSRFNGSLAWTRYMALAGQPIQWASQLGFQYSR-----QQLLNSYQITVGDEYTVRGY  452 (554)
T ss_dssp             --------------------CCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEECS-----SCSSSSEECCSCCCCCCTTC
T ss_pred             -------CCcCcccccCCCcceEEEEEEEEEEEEEccccCCCEEEEEEEEeEecC-----CCCCcHHhEecCCCCeECCc
Confidence                   00000001124678999999999999996   4567777777776642     46999999999999999999


Q ss_pred             CCCCCCcCCCCCCCcceeEEEeeEEEEeeCCCCCCCCCCCCCCceEEEEEecccccccCchhhhhhhhhcccCeeeeeeE
Q psy2168         396 AHYGIGPKSGGSSLGGTVYWQGAYHIYTPLPFTKPTKGSFSDNFRLNFFANAGSIQDMSASEITSKWRKLGEELRISYGI  475 (516)
Q Consensus       396 ~~~~igp~~~~~~~gG~~~~~~~~El~~~l~~~~~~~~~~~~~l~~~~F~D~G~~~~~~~~~~~~~~~~~~~~~~~s~G~  475 (516)
                      ++++++|        |+.++.+++||+||+.  .|. +.....+.+++|+|+|++|+....        ....++.|+|+
T Consensus       453 ~~~~l~p--------Gd~g~~~~~El~~~~~--~~~-~~~~~~~~~~~F~D~G~v~~~~~~--------~~~~~~~g~G~  513 (554)
T 2qdz_A          453 NLRTSQS--------GDSGVYLSNTLTVPVQ--FSL-LGKQASVAPFVGADVGALKSNHPD--------ARTIRMAGLAA  513 (554)
T ss_dssp             CCCCSCC--------SSCSSCCEESEEEEEE--EEE-EECCSSCEEEEEEEEEEEECSSSS--------CCEEEEEEEEE
T ss_pred             ccccccC--------CCccEEEEEEEEeecc--ccc-cCccceEEEEEEEEEEEEecCCCC--------CCCCEEEEEEE
Confidence            9876654        6777889999999972  110 000026899999999999986531        13457899999


Q ss_pred             EEEEeecceeEEEEEEEeecccc-CCCCccccE-EEEeeecC
Q psy2168         476 GLAIRFAGLARVEINYCFPYSYQ-RDDSVVPGM-QFGFGITF  515 (516)
Q Consensus       476 Gir~~~t~~g~i~l~~a~~l~~~-~~d~~~~~~-~f~ig~~F  515 (516)
                      |+||. +|.+|+++++|+|+.+. +++....+| ||+||..|
T Consensus       514 Glr~~-~~~~~l~l~~a~pl~~~~~~~~~~~~~~~fsig~~F  554 (554)
T 2qdz_A          514 GVRFD-LPYARMSFTYSKPVGAQPGGAPRAPVWLYINAGLSF  554 (554)
T ss_dssp             EEEEC-CSSEEEEEEEEEECSCSCSSSCCCCSEEEEEEEEEC
T ss_pred             EEEEe-cCcEEEEEEEEeeccCCcccccCCceEEEEEEEEEC
Confidence            99996 79999999999999876 443122349 99999987

PyMOL of 2qdz

>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A	Back alignment and structure

>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}	Back alignment and structure

>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A	Back alignment and structure

>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A	Back alignment and structure

>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli}	Back alignment and structure

>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A	Back alignment and structure

>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli}	Back alignment and structure

>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}	Back alignment and structure

>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A	Back alignment and structure

>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00