Psyllid ID: psy2177

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------
MLKFLRVLERLEPATAKLFDVNVNTQFRRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGIQYAGGHLRELQKAFKNPTAHLGLIIGEVKKRGLKSIGLSTPPSLHHVVHANLAESGVLCSKSVVLFGEAVESLLLKYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSYTKLGDIAKNELKF
ccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccccEEEEEcccccccccHHcccccHHHHHHccccccccccEEEEccccccccccccccccEEEEcccccEEEEcccEEEEEccccccEEEEEEEccccccccccccccEEEEEEcccccccccccccccccccccccccEEcccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcc
cHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccHHHHHHHHccccccccccccccHccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccHHHHHHHHHcccccccccHHcccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccEEEEEccEccEcccHHHcccEEEEcccccEEEEEEEEEEEEccccccEEEEEEEcccccccccccccEEEEEEEEcccccEEEEEEccccccccccEEEEEEEEEEEcHHHEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcEEccEEHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHEcccHHHHHHHHHHHHHHcccccccccccEEcccHHHHHHHHcHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcc
MLKFLRVLERLEPATAKLFDVNVNTQFRRLASASAAVKAKEEQKAAKESQSFTMNMFRgqlntnqvfpypevltedqsDTLKMLVDPVTKffdevndplkndsletvepntleglwdlgafslqvpqdlgglgltntQYARMVEIVGGNDLAVGIVLGahqsigfkgillvgnpeqkakylprvstgkEFAAfcltepasgsdagsiktravlspdgkhyilngskiwisnggfaEIMTVFaqtpvkdektgkvVDKVTAFIVERsfggvtsgppekkmgikasnTAEVyyedvkvpvenvlggvgnGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVqfgrridsFGTIQEKLARMALLHYVTESLAYMIsgnmdngsqdYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRgqlntnqvfpypevltedqsDTLKMLVDPVTKffdevndplkndsletvepntlegIQYAGGHLRELQKAFKNPTAHLGLIIGEVKKRglksiglstppslhhVVHANLAESGVLCSKSVVLFGEAVESLLLKYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRslnknlpsasHEQLLAELWCYEAAERVSQNlgalnsgkkldsytklgdiaknelkf
MLKFLRVLErlepataklfdvnvnTQFRRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDevndplkndsLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTepasgsdagsiKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAqtpvkdektgkvVDKVTAFIVersfggvtsgppekkmgIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDhatqrvqfgrridsfgTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDevndplkndsletvepnTLEGIQYAGGHLRELQKAFKNPTAHLGLIIGEVKKRGLKSIGLSTPPSLHHVVHANLAESGVLCSKSVVLFGEAVESLLLKYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNlgalnsgkkldsytklgdiaknelkf
MLKFLRVLERLEPATAKLFDVNVNTQFRRLasasaavkakeeqkaakesqsFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAiqilgginlllgrlasasaavkakeeqkaakesqsFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGIQYAGGHLRELQKAFKNPTAHLGLIIGEVKKRGLKSIGLSTPPSLHHVVHANLAESGVLCSKSVVLFGEAVESLLLKYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSYTKLGDIAKNELKF
***FLRVLERLEPATAKLFDVNVNTQFRR***************************FRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTE**********KTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGV************ASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLAS***********************MFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDP*******TVEPNTLEGIQYAGGHLRELQKAFKNPTAHLGLIIGEVKKRGLKSIGLSTPPSLHHVVHANLAESGVLCSKSVVLFGEAVESLLLKYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLN*******HEQLLAELWCYEAAERVSQNLG************************
*******************************************************MFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKD***GKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFF*************TVEPNTLEGIQYAGGHLRELQKAFKNPTAHLGLIIGEVKKRGLKSIGLSTPPSLHHVVHANLAESGVLCSKSVVLFGEAVESLLLKYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSR****************LLAELWCYEAAERVSQNLGALNSGKKLDSYTKLGDIAKNELKF
MLKFLRVLERLEPATAKLFDVNVNTQFRRLA******************QSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLAS*****************QSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGIQYAGGHLRELQKAFKNPTAHLGLIIGEVKKRGLKSIGLSTPPSLHHVVHANLAESGVLCSKSVVLFGEAVESLLLKYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSYTKLGDIAKNELKF
MLKFLRVLERLEPATAKLFDVNVNTQFRRLASAS************KESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGIQYAGGHLRELQKAFKNPTAHLGLIIGEVKKRGLKSIGLSTPPSLHHVVHANLAESGVLCSKSVVLFGEAVESLLLKYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSYTKLGDIAKNELKF
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLKFLRVLERLEPATAKLFDVNVNTQFRRxxxxxxxxxxxxxxxxxxxxxSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRxxxxxxxxxxxxxxxxxxxxxSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGIQYAGGHLRELQKAFKNPTAHLGLIIGEVKKRGLKSIGLSTPPSLHHVVHANLAESGVLCSKSVVLFGEAVESLLLKYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSGKKLDSYTKLGDIAKNELKF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query677 2.2.26 [Sep-21-2011]
P45953655 Very long-chain specific yes N/A 0.828 0.856 0.548 0.0
P50544656 Very long-chain specific yes N/A 0.830 0.856 0.539 0.0
P48818655 Very long-chain specific yes N/A 0.828 0.856 0.550 0.0
P49748655 Very long-chain specific yes N/A 0.837 0.865 0.544 0.0
Q8HXY7655 Very long-chain specific N/A N/A 0.849 0.877 0.538 0.0
Q9H845621 Acyl-CoA dehydrogenase fa no N/A 0.833 0.908 0.427 1e-132
Q8JZN5625 Acyl-CoA dehydrogenase fa no N/A 0.821 0.889 0.429 1e-128
O32176594 Probable acyl-CoA dehydro yes N/A 0.506 0.577 0.368 3e-56
P45857379 Acyl-CoA dehydrogenase OS no N/A 0.437 0.781 0.414 5e-54
P63430650 Probable acyl-CoA dehydro yes N/A 0.550 0.573 0.314 4e-51
>sp|P45953|ACADV_RAT Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Acadvl PE=1 SV=1 Back     alignment and function desciption
 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/616 (54%), Positives = 423/616 (68%), Gaps = 55/616 (8%)

Query: 42  EQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKN 101
           E+ A  ES+SF + MF+GQL T+QVFPYP VL E Q+  LK LV PV +FF+EVNDP KN
Sbjct: 63  EKPARAESKSFAVGMFKGQLTTDQVFPYPSVLNEGQTQFLKELVGPVARFFEEVNDPAKN 122

Query: 102 DSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQ 161
           DSLE VE +TL+GL +LGAF LQVP +LGGLGL+NTQYAR+ EIVG +DL V + LGAHQ
Sbjct: 123 DSLEKVEEDTLQGLKELGAFGLQVPSELGGLGLSNTQYARLAEIVGMHDLGVSVTLGAHQ 182

Query: 162 SIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYI 221
           SIGFKGILL G   QK KYLPRV++G+  AAFCLTEP+SGSD  SI++ AV SP GK+Y 
Sbjct: 183 SIGFKGILLYGTKAQKEKYLPRVASGQALAAFCLTEPSSGSDVASIRSSAVPSPCGKYYT 242

Query: 222 LNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGI 281
           LNGSKIWISNGG A+I TVFA+TP+KD  TG V +K+TAF+VERSFGGVT G PEKKMGI
Sbjct: 243 LNGSKIWISNGGLADIFTVFAKTPIKDAATGAVKEKITAFVVERSFGGVTHGLPEKKMGI 302

Query: 282 KASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDH 341
           KASNT+EVY++ VKVP ENVLG VG+GFKVA+ ILNNGRFGMAA LAGTM+++  KAVDH
Sbjct: 303 KASNTSEVYFDGVKVPAENVLGEVGDGFKVAVNILNNGRFGMAATLAGTMKAIIAKAVDH 362

Query: 342 ATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFA 401
           AT R QFG +I +FG IQEKLARMA+L YVTES+AYM+S NMD G +D+ +EAAISK+F 
Sbjct: 363 ATNRTQFGDKIHNFGVIQEKLARMAILQYVTESMAYMLSANMDQGFKDFQIEAAISKIFG 422

Query: 402 SEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQ 461
           SEAAW VTDE IQI+GG+  +                ++   E     + +FR       
Sbjct: 423 SEAAWKVTDECIQIMGGMGFM----------------KEPGVERVLRDIRIFR------- 459

Query: 462 VFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGIQYAGGHLREL 521
                  + E  +D L++ V                          L+G    G  L  L
Sbjct: 460 -------IFEGTNDILRLFV-------------------------ALQGCMDKGKELTGL 487

Query: 522 QKAFKNPTAHLGLIIGEVKKRGLKSIGLSTPPSLHHVVHANLAESGVLCSKSVVLFGEAV 581
             A KNP  ++GL+IGE  K+  +  G+ +  SL  +VH  L+ SG L  +++  F   V
Sbjct: 488 GNALKNPLGNVGLLIGEASKQLRRRTGIGSGLSLSGIVHPELSRSGELAVQALEQFATVV 547

Query: 582 ESLLLKYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWC 641
           E+ L+K+ KG+V EQFLL RLA  A D Y M VVLSRA+RSL++  P+A HE++L + WC
Sbjct: 548 EAKLMKHKKGIVNEQFLLQRLADGAIDLYAMVVVLSRASRSLSEGYPTAQHEKMLCDSWC 607

Query: 642 YEAAERVSQNLGALNS 657
            EAA R+ +N+ +L S
Sbjct: 608 IEAATRIRENMASLQS 623
Active toward esters of long-chain and very long chain fatty acids such as palmitoyl-CoA, mysritoyl-CoA and stearoyl-CoA. Can accommodate substrate acyl chain lengths as long as 24 carbons, but shows little activity for substrates of less than 12 carbons.
Rattus norvegicus (taxid: 10116)
EC: 1EC: .EC: 3EC: .EC: 9EC: 9EC: .EC: -
>sp|P50544|ACADV_MOUSE Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Acadvl PE=1 SV=3 Back     alignment and function description
>sp|P48818|ACADV_BOVIN Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=ACADVL PE=2 SV=3 Back     alignment and function description
>sp|P49748|ACADV_HUMAN Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=ACADVL PE=1 SV=1 Back     alignment and function description
>sp|Q8HXY7|ACADV_MACFA Very long-chain specific acyl-CoA dehydrogenase, mitochondrial OS=Macaca fascicularis GN=ACADVL PE=2 SV=1 Back     alignment and function description
>sp|Q9H845|ACAD9_HUMAN Acyl-CoA dehydrogenase family member 9, mitochondrial OS=Homo sapiens GN=ACAD9 PE=1 SV=1 Back     alignment and function description
>sp|Q8JZN5|ACAD9_MOUSE Acyl-CoA dehydrogenase family member 9, mitochondrial OS=Mus musculus GN=Acad9 PE=2 SV=2 Back     alignment and function description
>sp|O32176|FADE_BACSU Probable acyl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=fadE PE=2 SV=1 Back     alignment and function description
>sp|P45857|ACDB_BACSU Acyl-CoA dehydrogenase OS=Bacillus subtilis (strain 168) GN=mmgC PE=2 SV=3 Back     alignment and function description
>sp|P63430|Y897_MYCBO Probable acyl-CoA dehydrogenase FadE10 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=fadE10 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query677
328713184633 PREDICTED: very long-chain specific acyl 0.906 0.969 0.657 0.0
91076006630 PREDICTED: similar to acyl-coa dehydroge 0.875 0.941 0.637 0.0
383864239632 PREDICTED: very long-chain specific acyl 0.909 0.974 0.596 0.0
307198078637 Very long-chain specific acyl-CoA dehydr 0.870 0.924 0.606 0.0
322788010636 hypothetical protein SINV_11674 [Solenop 0.911 0.970 0.584 0.0
307180055638 Very long-chain specific acyl-CoA dehydr 0.870 0.923 0.601 0.0
332021483636 Very long-chain specific acyl-CoA dehydr 0.889 0.946 0.585 0.0
345497097633 PREDICTED: very long-chain specific acyl 0.880 0.941 0.590 0.0
157107359630 acyl-coa dehydrogenase [Aedes aegypti] g 0.874 0.939 0.573 0.0
321460362632 hypothetical protein DAPPUDRAFT_327246 [ 0.853 0.914 0.609 0.0
>gi|328713184|ref|XP_001949624.2| PREDICTED: very long-chain specific acyl-CoA dehydrogenase, mitochondrial-like isoform 1 [Acyrthosiphon pisum] gi|328713186|ref|XP_003245012.1| PREDICTED: very long-chain specific acyl-CoA dehydrogenase, mitochondrial-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  879 bits (2270), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/675 (65%), Positives = 521/675 (77%), Gaps = 61/675 (9%)

Query: 1   MLKFLRVLERLEPATAKLFDVNVNTQFRRLASASA---AVKAKEEQKAAKESQSFTMNMF 57
           M K    L R +  T  L D     + RRL S SA     K  + +K  K+S+SFTMN+F
Sbjct: 1   MFKVYNKLNRNQLKT--LEDYKTVQKTRRLLSTSAIHLKEKTSDSKKDVKQSKSFTMNLF 58

Query: 58  RGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGLWD 117
           RGQL T+QVFPYP VL ++Q++TL  LVDPVTKFF EVN+PLKND +ETVEPNTLEGLWD
Sbjct: 59  RGQLQTSQVFPYPNVLNDEQTETLTSLVDPVTKFFKEVNNPLKNDEIETVEPNTLEGLWD 118

Query: 118 LGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQK 177
           +GAFSLQVPQDLGGLGL+NTQYARMVEIVG +DLAVGIVLGAHQSIGFKGILL G PEQK
Sbjct: 119 MGAFSLQVPQDLGGLGLSNTQYARMVEIVGAHDLAVGIVLGAHQSIGFKGILLFGTPEQK 178

Query: 178 AKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEI 237
           AKYLPRVS  KEFAAFCLTEP+SGSDAGSI+TRAVLSPDGKH++LNG+KIWISNGG AEI
Sbjct: 179 AKYLPRVSN-KEFAAFCLTEPSSGSDAGSIRTRAVLSPDGKHFVLNGNKIWISNGGMAEI 237

Query: 238 MTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVP 297
           MTVFAQTPVKDEKTGK VDKVTAFIVER+FGGV++ PPEKKMGIKASNTAEV YEDVK+P
Sbjct: 238 MTVFAQTPVKDEKTGKTVDKVTAFIVERAFGGVSNSPPEKKMGIKASNTAEVTYEDVKIP 297

Query: 298 VENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGT 357
           +ENVLGGVG GFKVAM ILNNGRFGMAAAL+GTMRSVT KAV+HAT RVQFG+R+DSFG+
Sbjct: 298 IENVLGGVGQGFKVAMNILNNGRFGMAAALSGTMRSVTAKAVEHATTRVQFGKRLDSFGS 357

Query: 358 IQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILG 417
           IQEKLARMA+LHYVTES+AYMISGNMD+GS DYHLEAAISK FASE+AWYV DEAIQILG
Sbjct: 358 IQEKLARMAMLHYVTESMAYMISGNMDSGSIDYHLEAAISKCFASESAWYVCDEAIQILG 417

Query: 418 GINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTL 477
           G+  +           KA   +K  ++     + +FR              + E  +D L
Sbjct: 418 GMGYM-----------KATGLEKVMRD-----LRIFR--------------IFEGTNDIL 447

Query: 478 KMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGIQYAGGHLRELQKAFKNPTAHLGLIIG 537
           ++ V                          L GIQ+AG HL+ELQKAFKNPTA+LGLI+ 
Sbjct: 448 RLFV-------------------------ALTGIQFAGSHLKELQKAFKNPTANLGLILE 482

Query: 538 EVKKRGLKSIGLSTPPSLHHVVHANLAESGVLCSKSVVLFGEAVESLLLKYGKGVVEEQF 597
           EV KR L S+G S+ PSL H+VH  L+++  L  +SV LFG AVESLL+K+GKG+++EQF
Sbjct: 483 EVTKRALSSVGFSSAPSLSHLVHPKLSDAANLAGQSVGLFGPAVESLLIKHGKGIIDEQF 542

Query: 598 LLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNS 657
           LLNRLA AA DTYTM VVLSRATR+LN  LP+A +E LL +++C EA++RV+ NL  L S
Sbjct: 543 LLNRLAQAAIDTYTMTVVLSRATRALNLGLPTADYEALLTQVYCSEASDRVASNLLQLKS 602

Query: 658 GKKLDSYTKLGDIAK 672
           GK LD+++K+ DIA+
Sbjct: 603 GKHLDNFSKMSDIAE 617

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|91076006|ref|XP_966406.1| PREDICTED: similar to acyl-coa dehydrogenase isoform 1 [Tribolium castaneum] gi|270014595|gb|EFA11043.1| hypothetical protein TcasGA2_TC004634 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|383864239|ref|XP_003707587.1| PREDICTED: very long-chain specific acyl-CoA dehydrogenase, mitochondrial-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307198078|gb|EFN79131.1| Very long-chain specific acyl-CoA dehydrogenase, mitochondrial [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|322788010|gb|EFZ13851.1| hypothetical protein SINV_11674 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307180055|gb|EFN68131.1| Very long-chain specific acyl-CoA dehydrogenase, mitochondrial [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332021483|gb|EGI61848.1| Very long-chain specific acyl-CoA dehydrogenase, mitochondrial [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|345497097|ref|XP_001601226.2| PREDICTED: very long-chain specific acyl-CoA dehydrogenase, mitochondrial-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|157107359|ref|XP_001649744.1| acyl-coa dehydrogenase [Aedes aegypti] gi|108879621|gb|EAT43846.1| AAEL004739-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|321460362|gb|EFX71405.1| hypothetical protein DAPPUDRAFT_327246 [Daphnia pulex] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query677
ZFIN|ZDB-GENE-030131-899659 acadvl "acyl-Coenzyme A dehydr 0.531 0.546 0.733 5.6e-180
RGD|2014655 Acadvl "acyl-CoA dehydrogenase 0.531 0.549 0.705 6.3e-168
UNIPROTKB|P49748655 ACADVL "Very long-chain specif 0.531 0.549 0.702 1.7e-167
UNIPROTKB|E2QXA3687 ACADVL "Uncharacterized protei 0.531 0.524 0.713 2.1e-167
UNIPROTKB|P48818655 ACADVL "Very long-chain specif 0.531 0.549 0.713 3.4e-167
UNIPROTKB|I3LLE3701 LOC100622764 "Uncharacterized 0.531 0.513 0.705 1.5e-166
MGI|MGI:895149656 Acadvl "acyl-Coenzyme A dehydr 0.531 0.548 0.694 2.2e-165
FB|FBgn0034432627 CG7461 [Drosophila melanogaste 0.533 0.575 0.667 2.8e-165
UNIPROTKB|J9P0B6449 ACADVL "Uncharacterized protei 0.525 0.792 0.719 3.8e-142
UNIPROTKB|F1ST43524 LOC100622764 "Uncharacterized 0.531 0.687 0.705 2e-136
ZFIN|ZDB-GENE-030131-899 acadvl "acyl-Coenzyme A dehydrogenase, very long chain" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 1399 (497.5 bits), Expect = 5.6e-180, Sum P(2) = 5.6e-180
 Identities = 264/360 (73%), Positives = 314/360 (87%)

Query:    52 FTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNT 111
             F +NMF+GQ++T+QVFPYP VL E+QS  L+ LV P +KFF+EVNDP+KND+LE VE +T
Sbjct:    78 FAVNMFKGQISTSQVFPYPSVLNEEQSQFLRELVGPCSKFFEEVNDPMKNDALEKVEEHT 137

Query:   112 LEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLV 171
             L+GL ++GAF LQVP DLGG+GLTNTQYAR+VEIVG +DL VGI LGAHQSIGFKGILL 
Sbjct:   138 LQGLKEMGAFGLQVPADLGGVGLTNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLF 197

Query:   172 GNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISN 231
             GNP+QK KYLP+++TG+  AAFCLTEPASGSDA SIKT AV SP G++Y +NGSKIWISN
Sbjct:   198 GNPQQKEKYLPKLATGENIAAFCLTEPASGSDAASIKTTAVRSPCGQYYTMNGSKIWISN 257

Query:   232 GGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYY 291
             GG AEI TVFA+TPVKDEKTG++ DK+TAFIVERSFGGV+SGPPEKKMGIKASNTAEVY+
Sbjct:   258 GGTAEIFTVFAKTPVKDEKTGEMKDKITAFIVERSFGGVSSGPPEKKMGIKASNTAEVYF 317

Query:   292 EDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRR 351
             E+V+VP + VLG VG GFKVAM ILNNGRFGMAAAL+GTM+ V  KAVDHA  R QFG +
Sbjct:   318 ENVRVPADCVLGEVGGGFKVAMNILNNGRFGMAAALSGTMKGVITKAVDHAANRTQFGNK 377

Query:   352 IDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDE 411
             I ++G IQEK+ARMA+L YVTES+AYM+SGNMD+G+ ++ +EAAISK+FASEAAW VTDE
Sbjct:   378 IHNYGAIQEKMARMAMLQYVTESMAYMVSGNMDSGATEFQIEAAISKIFASEAAWLVTDE 437
GO:0016627 "oxidoreductase activity, acting on the CH-CH group of donors" evidence=IEA
GO:0003995 "acyl-CoA dehydrogenase activity" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
RGD|2014 Acadvl "acyl-CoA dehydrogenase, very long chain" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P49748 ACADVL "Very long-chain specific acyl-CoA dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QXA3 ACADVL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P48818 ACADVL "Very long-chain specific acyl-CoA dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3LLE3 LOC100622764 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:895149 Acadvl "acyl-Coenzyme A dehydrogenase, very long chain" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0034432 CG7461 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|J9P0B6 ACADVL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1ST43 LOC100622764 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8HXY7ACADV_MACFA1, ., 3, ., 9, 9, ., -0.53880.84930.8778N/AN/A
P48818ACADV_BOVIN1, ., 3, ., 9, 9, ., -0.55030.82860.8564yesN/A
P49748ACADV_HUMAN1, ., 3, ., 9, 9, ., -0.54480.83750.8656yesN/A
P50544ACADV_MOUSE1, ., 3, ., 9, 9, ., -0.53970.83010.8567yesN/A
P45953ACADV_RAT1, ., 3, ., 9, 9, ., -0.54870.82860.8564yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.3.990.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query677
cd01161409 cd01161, VLCAD, Very long chain acyl-CoA dehydroge 0.0
cd01158373 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrog 3e-96
COG1960393 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid meta 2e-89
cd00567327 cd00567, ACAD, Acyl-CoA dehydrogenase 7e-88
cd01156376 cd01156, IVD, Isovaleryl-CoA dehydrogenase 1e-70
cd01162375 cd01162, IBD, Isobutyryl-CoA dehydrogenase 5e-59
PLN02519404 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase 5e-55
cd01157378 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase 7e-54
cd01160372 cd01160, LCAD, Long chain acyl-CoA dehydrogenase 1e-52
cd01151386 cd01151, GCD, Glutaryl-CoA dehydrogenase 2e-47
PTZ00461410 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; 2e-47
PRK03354380 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogen 5e-41
PRK12341381 PRK12341, PRK12341, putative acyl-CoA dehydrogenas 5e-39
cd01152380 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehyd 9e-38
cd01153407 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogena 2e-34
cd01155394 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases simil 1e-31
pfam00441150 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, 3e-27
PLN02526412 PLN02526, PLN02526, acyl-coenzyme A oxidase 7e-26
TIGR03207372 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-Co 2e-24
cd01154418 cd01154, AidB, Proteins involved in DNA damage res 2e-22
PTZ00457520 PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provis 1e-21
PLN02876822 PLN02876, PLN02876, acyl-CoA dehydrogenase 5e-19
PRK09463777 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed 6e-19
TIGR03204395 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, 6e-19
pfam02771113 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, 9e-19
cd01161 409 cd01161, VLCAD, Very long chain acyl-CoA dehydroge 2e-18
PRK13026774 PRK13026, PRK13026, acyl-CoA dehydrogenase; Review 2e-18
pfam0277052 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, 4e-18
TIGR03203378 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, 2e-16
PTZ00456622 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provis 2e-15
cd01163377 cd01163, DszC, Dibenzothiophene (DBT) desulfurizat 5e-13
cd01150610 cd01150, AXO, Peroxisomal acyl-CoA oxidase 3e-12
PLN02636686 PLN02636, PLN02636, acyl-coenzyme A oxidase 4e-11
PTZ00457520 PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provis 5e-09
TIGR04022391 TIGR04022, sulfur_SfnB, sulfur acquisition oxidore 2e-07
PRK11561538 PRK11561, PRK11561, isovaleryl CoA dehydrogenase; 6e-05
PTZ00460646 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provis 3e-04
PLN02312680 PLN02312, PLN02312, acyl-CoA oxidase 8e-04
cd01159370 cd01159, NcnH, Naphthocyclinone hydroxylase 0.001
>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase Back     alignment and domain information 
 Score =  594 bits (1533), Expect = 0.0
 Identities = 258/369 (69%), Positives = 295/369 (79%), Gaps = 3/369 (0%)

Query: 51  SFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPN 110
           SF +NMF G + T QVFPYP VLTE+Q++ L MLV PV KFF+EVNDP KND LE +   
Sbjct: 1   SFALNMFLGDIVTKQVFPYPSVLTEEQTEELNMLVGPVEKFFEEVNDPAKNDQLEKIPRK 60

Query: 111 TLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILL 170
           TL  L +LG F LQVP++ GGLGL NTQYAR+ EIVG  DL   + LGAHQSIGFKGILL
Sbjct: 61  TLTQLKELGLFGLQVPEEYGGLGLNNTQYARLAEIVG-MDLGFSVTLGAHQSIGFKGILL 119

Query: 171 VGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWIS 230
            G   QK KYLP++++G+  AAF LTEP+SGSDA SI+T AVLS DGKHY+LNGSKIWI+
Sbjct: 120 FGTEAQKEKYLPKLASGEWIAAFALTEPSSGSDAASIRTTAVLSEDGKHYVLNGSKIWIT 179

Query: 231 NGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVY 290
           NGG A+I TVFA+T VKD  TG V DK+TAFIVERSFGGVT+GPPEKKMGIK SNTAEVY
Sbjct: 180 NGGIADIFTVFAKTEVKDA-TGSVKDKITAFIVERSFGGVTNGPPEKKMGIKGSNTAEVY 238

Query: 291 YEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGR 350
           +EDVK+PVENVLG VG+GFKVAM ILNNGRFGM AAL GTM+   +KAVD+A  R QFG+
Sbjct: 239 FEDVKIPVENVLGEVGDGFKVAMNILNNGRFGMGAALIGTMKRCIEKAVDYANNRKQFGK 298

Query: 351 RIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGS-QDYHLEAAISKVFASEAAWYVT 409
           +I  FG IQEKLA MA+L Y TES+AYM SGNMD G   +Y +EAAISKVFASEAAW V 
Sbjct: 299 KIHEFGLIQEKLANMAILQYATESMAYMTSGNMDRGLKAEYQIEAAISKVFASEAAWLVV 358

Query: 410 DEAIQILGG 418
           DEAIQI GG
Sbjct: 359 DEAIQIHGG 367

VLCAD is an acyl-CoA dehydrogenase (ACAD), which is found in the mitochondria of eukaryotes and in some bacteria. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. VLCAD acts as a homodimer. Length = 409
>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>gnl|CDD|224871 COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|173838 cd00567, ACAD, Acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173845 cd01156, IVD, Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173851 cd01162, IBD, Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|215284 PLN02519, PLN02519, isovaleryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173846 cd01157, MCAD, Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173849 cd01160, LCAD, Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|185640 PTZ00461, PTZ00461, isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|179566 PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|183454 PRK12341, PRK12341, putative acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|173841 cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information
>gnl|CDD|173842 cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5 Back     alignment and domain information
>gnl|CDD|173844 cd01155, ACAD_FadE2, Acyl-CoA dehydrogenases similar to fadE2 Back     alignment and domain information
>gnl|CDD|201229 pfam00441, Acyl-CoA_dh_1, Acyl-CoA dehydrogenase, C-terminal domain Back     alignment and domain information
>gnl|CDD|178141 PLN02526, PLN02526, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|132251 TIGR03207, cyc_hxne_CoA_dh, cyclohexanecarboxyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|173843 cd01154, AidB, Proteins involved in DNA damage response, similar to the AidB gene product Back     alignment and domain information
>gnl|CDD|185636 PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|215473 PLN02876, PLN02876, acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|236528 PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|132248 TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit Back     alignment and domain information
>gnl|CDD|217220 pfam02771, Acyl-CoA_dh_N, Acyl-CoA dehydrogenase, N-terminal domain Back     alignment and domain information
>gnl|CDD|173850 cd01161, VLCAD, Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>gnl|CDD|237277 PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>gnl|CDD|145755 pfam02770, Acyl-CoA_dh_M, Acyl-CoA dehydrogenase, middle domain Back     alignment and domain information
>gnl|CDD|132247 TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit Back     alignment and domain information
>gnl|CDD|185635 PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|173852 cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C Back     alignment and domain information
>gnl|CDD|173839 cd01150, AXO, Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase Back     alignment and domain information
>gnl|CDD|185636 PTZ00457, PTZ00457, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|188537 TIGR04022, sulfur_SfnB, sulfur acquisition oxidoreductase, SfnB family Back     alignment and domain information
>gnl|CDD|183199 PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|185639 PTZ00460, PTZ00460, acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|215178 PLN02312, PLN02312, acyl-CoA oxidase Back     alignment and domain information
>gnl|CDD|173848 cd01159, NcnH, Naphthocyclinone hydroxylase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 677
KOG0137|consensus634 100.0
PRK09463 777 fadE acyl-CoA dehydrogenase; Reviewed 100.0
PTZ00457520 acyl-CoA dehydrogenase; Provisional 100.0
PRK13026 774 acyl-CoA dehydrogenase; Reviewed 100.0
KOG0139|consensus398 100.0
KOG0140|consensus408 100.0
KOG0141|consensus421 100.0
cd01161409 VLCAD Very long chain acyl-CoA dehydrogenase. VLCA 100.0
cd01151386 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd 100.0
PTZ00456622 acyl-CoA dehydrogenase; Provisional 100.0
TIGR03203378 pimD_small pimeloyl-CoA dehydrogenase, small subun 100.0
cd01157378 MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar 100.0
cd01162375 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d 100.0
TIGR03207372 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen 100.0
PTZ00461410 isovaleryl-CoA dehydrogenase; Provisional 100.0
PRK12341381 putative acyl-CoA dehydrogenase; Provisional 100.0
cd01156376 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d 100.0
PLN02636686 acyl-coenzyme A oxidase 100.0
cd01160372 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an 100.0
PRK03354380 crotonobetainyl-CoA dehydrogenase; Validated 100.0
PLN02519404 isovaleryl-CoA dehydrogenase 100.0
PLN02526412 acyl-coenzyme A oxidase 100.0
COG1960393 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] 100.0
cd01155394 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE 100.0
cd01158373 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and 100.0
TIGR03204395 pimC_large pimeloyl-CoA dehydrogenase, large subun 100.0
cd01153407 ACAD_fadE5 Putative acyl-CoA dehydrogenases simila 100.0
PLN02312680 acyl-CoA oxidase 100.0
PRK11561538 isovaleryl CoA dehydrogenase; Provisional 100.0
cd01152380 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases 100.0
PLN02876822 acyl-CoA dehydrogenase 100.0
cd01154418 AidB Proteins involved in DNA damage response, sim 100.0
KOG0138|consensus432 100.0
cd01163377 DszC Dibenzothiophene (DBT) desulfurization enzyme 100.0
PTZ00460646 acyl-CoA dehydrogenase; Provisional 100.0
cd01150610 AXO Peroxisomal acyl-CoA oxidase. Peroxisomal acyl 100.0
PLN02443664 acyl-coenzyme A oxidase 100.0
cd01159370 NcnH Naphthocyclinone hydroxylase. Naphthocyclinon 100.0
cd00567327 ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac 100.0
KOG1469|consensus392 100.0
KOG0135|consensus661 100.0
KOG0136|consensus670 99.95
TIGR02309477 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxy 99.92
PF00441150 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal 99.88
PF02771113 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal 99.67
PF0277052 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle doma 99.44
COG2368493 Aromatic ring hydroxylase [Secondary metabolites b 99.33
PF08028134 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal 99.29
PF09317 284 DUF1974: Domain of unknown function (DUF1974); Int 99.26
TIGR02310519 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxy 99.16
PF11794264 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N ter 98.13
PF03241205 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C termi 95.54
PF00441150 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal 93.9
cd01162375 IBD Isobutyryl-CoA dehydrogenase. Isobutyryl-CoA d 91.98
cd01161409 VLCAD Very long chain acyl-CoA dehydrogenase. VLCA 89.41
cd01157378 MCAD Medium chain acyl-CoA dehydrogenase. MCADs ar 88.97
PRK03354380 crotonobetainyl-CoA dehydrogenase; Validated 88.16
PTZ00457520 acyl-CoA dehydrogenase; Provisional 88.11
cd00567327 ACAD Acyl-CoA dehydrogenase. Both mitochondrial ac 87.87
TIGR03207372 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogen 87.72
KOG0139|consensus398 87.58
cd01151386 GCD Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehyd 87.58
PLN02526412 acyl-coenzyme A oxidase 87.4
PRK12341381 putative acyl-CoA dehydrogenase; Provisional 87.09
PF14749125 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; 86.94
TIGR03203378 pimD_small pimeloyl-CoA dehydrogenase, small subun 86.8
cd01155394 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE 84.81
PTZ00461410 isovaleryl-CoA dehydrogenase; Provisional 84.72
PLN02519404 isovaleryl-CoA dehydrogenase 84.65
cd01160372 LCAD Long chain acyl-CoA dehydrogenase. LCAD is an 84.45
PRK09463 777 fadE acyl-CoA dehydrogenase; Reviewed 83.83
cd01156376 IVD Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA d 83.26
KOG0137|consensus634 83.07
cd01152380 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases 82.98
>KOG0137|consensus Back     alignment and domain information 
Probab=100.00  E-value=5.7e-113  Score=925.28  Aligned_cols=601  Identities=52%  Similarity=0.776  Sum_probs=570.5

Q ss_pred             cccccchHHHhhhhhhhhhhhhhh--HhhhhcccCcchhHhhccCCCCccccCCCCCCCChhhHHHHHHHHHHHHHHHHh
Q psy2177          17 KLFDVNVNTQFRRLASASAAVKAK--EEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDE   94 (677)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~f~~~lf~g~~~~~~~~~~p~~l~~e~~~~~~~l~~~~~~f~~~   94 (677)
                      .+..++-.+-+.+....++.....  ..+..+..+.+|.+++|.|+...+++||||+++++|+.+.++++++++++|+.+
T Consensus        18 ~~t~r~t~~~~a~~~~~a~ta~~~~~~~k~~~i~~rs~~~~lF~~~~v~k~v~~yPev~~~e~~~~~~~~~~pl~r~f~e   97 (634)
T KOG0137|consen   18 TLTARHTSASRAYLGGAAQTAPRRLDSKKDASIESRSFARGLFRGKLVTKDVFPYPEVITSEQKELLEQFVLPLERFFEE   97 (634)
T ss_pred             ccccccchhhhhhhcchhhhccccccccccCCccchhHHHHhhhhhhhhhhhcCCcccCcHHHHHHHHhhhhhHHHhhhc
Confidence            334444444444444433322222  233678899999999999999999999999999999999999999999999999


Q ss_pred             hCCCcccCcCCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhccCchhHHHHHHhhhhHHHHHHhcCCh
Q psy2177          95 VNDPLKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNP  174 (677)
Q Consensus        95 ~~~p~~~d~~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~~d~s~~~~l~~h~~~g~~~i~~~Gt~  174 (677)
                      ++|+..+|+.+.+++++++.|+++|+||+.||++|||.|+++++++++.|.++.+|.++++.+.+|++++...|..||++
T Consensus        98 ~~d~~k~d~~~~~~~~t~e~l~elG~fgl~v~~e~~G~G~~ntq~arl~e~~~~~D~~v~~tl~ahq~i~~k~l~lyGt~  177 (634)
T KOG0137|consen   98 VNDSKKNDKLGKIEETTLEALRELGLFGLQVPSEFDGLGFCNTQYARLFEIVSVADLNVGVTLGAHQSIGLKGLLLYGTD  177 (634)
T ss_pred             cchhhhhhhhcccchhHHHHHHHhCceeeccCcccCccccchHHHHHHhhccccccccceeeeccchhhheeeeeecCCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEeecCccccCEEEEEEEcCCCCCCCCcc
Q psy2177         175 EQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKV  254 (677)
Q Consensus       175 eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~isna~~Ad~~lV~Art~~~d~~~g~~  254 (677)
                      +||++|||+|++|+.+++||+|||..|||++++.|+|++.+||++|+|||.|.||||++.||+++|||+|+ .|+.+|..
T Consensus       178 ~Qk~kYL~~LaSg~~~~A~altE~s~Gsdaas~~~~a~~s~dg~~y~LNG~Kiwisn~g~Adif~VfAqt~-~~~~~g~~  256 (634)
T KOG0137|consen  178 EQKQKYLPKLASGKLIAAFALTEPSSGSDAASGRTTATLSPDGKHYVLNGSKIWISNGGLADIFTVFAQTE-VDPADGEV  256 (634)
T ss_pred             HHHHHHHHhhhcCCccceEEEecCCCCcccccceeeeeecCCCCeEEEcCeeEEEecCccceeeeeeeccc-cCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998 57788988


Q ss_pred             cCeEEEEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2177         255 VDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSV  334 (677)
Q Consensus       255 ~~gis~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~a  334 (677)
                      ++++++|||+++..||+.++++.+||+||+++++|+|++|.||.+|+||.+|+|++++|+++|.+|+.+++.++|+||++
T Consensus       257 k~k~T~Flver~~~Gvt~G~~e~k~GiKgsnt~~v~f~~~ki~~envlG~~G~G~kva~nilnsgR~~~aaa~~G~mkr~  336 (634)
T KOG0137|consen  257 KRKITAFLVERDFGGVTNGPPEKKMGIKGSNTAEVHFEGVKIPIENVLGKPGDGFKVAMNILNSGRFGMAAALLGLMKRI  336 (634)
T ss_pred             cCceEEEEEeccccCccCCCchhhhcccccceeeeeeccccccHHHhcCCCCcchHHHHHHHccCCcchhHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC-CCCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy2177         335 TKKAVDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDN-GSQDYHLEAAISKVFASEAAWYVTDEAI  413 (677)
Q Consensus       335 l~~a~~~a~~R~qfg~pi~~~~~vq~~La~m~~~~~aa~al~~~~a~~~d~-~~~~~~~~~a~aK~~ase~a~~v~~~a~  413 (677)
                      ++++.+|+..|+|||.+|.++..+|+++++|...+|++|+++|.+++.+|+ +..++.+++++.|+|++|.+|.++++++
T Consensus       337 I~~~~d~~~~rtQ~g~~L~~~~l~q~k~~~m~~~~Ya~ESm~yl~sg~~D~~~a~d~~lEaai~Ki~a~e~a~~v~se~i  416 (634)
T KOG0137|consen  337 IEEAADYATNRTQFGKKLHDFGLIQEKVAEMASKVYATESMLYLLSGLMDEVGAKDVQLEAAILKIFASEQAWAVVSEAI  416 (634)
T ss_pred             HHHHHHHhhcceecCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccceeeeehHHHHHHHhhhHHHHHHHhhh
Confidence            999999999999999999999999999999999999999999999999999 7889999999999999999999999999


Q ss_pred             HHhCCcccccchhhhhhHHHHhHHHHHHhhhhhHHHhhhhhcccCCCCCCChhhhhhhhhhhhhhhhcCCccccccCchH
Q psy2177         414 QILGGINLLLGRLASASAAVKAKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVND  493 (677)
Q Consensus       414 qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ler~~RD~~~~~ar~~~~pi~~i~eGtn~  493 (677)
                      |++||+||+.             +                         +|+||++||     +|     +++|||||||
T Consensus       417 qi~Gg~g~m~-------------d-------------------------~g~Er~LRD-----~r-----i~~I~egtnd  448 (634)
T KOG0137|consen  417 QIVGGMGYMR-------------D-------------------------TGLERLLRD-----AR-----ILRIFEGTND  448 (634)
T ss_pred             heeccccccc-------------c-------------------------CchHHHhhh-----hh-----eeeeecCchh
Confidence            9999999999             8                         999999999     99     9999999999


Q ss_pred             HhhhccCCCcchhHHHHHHHHhhhHHHHHHHhcCCCCchhHHHHHHHHHHHHHhcCCCCCCCccccCcchHHHHHHHHHH
Q psy2177         494 PLKNDSLETVEPNTLEGIQYAGGHLRELQKAFKNPTAHLGLIIGEVKKRGLKSIGLSTPPSLHHVVHANLAESGVLCSKS  573 (677)
Q Consensus       494 i~~~~~~~~~~~ia~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~  573 (677)
                      |++++       |++.++|++|.+|+.....++|  .+++++.+...+ ..+..++..+..|++++||+|+.+++.++.+
T Consensus       449 vLrlf-------iAltg~q~ag~~l~~~~r~~kn--~n~gli~~~~~~-~~~~~g~~~~~~ls~hvhpsL~~saq~~e~~  518 (634)
T KOG0137|consen  449 VLRLF-------IALTGLQHAGKHLATGVRALKN--ANPGLIGGKVSR-LRSLRGPGTGLYLSEHVHPSLQDSAQKLESS  518 (634)
T ss_pred             HHHHH-------HHHHHHHhhhHHHHHHHHHhhc--CCcchhcchhhh-hhhccCCCcccccccccCHHHHHHHHHHHHH
Confidence            99999       9999999999999999999998  899999888887 6667777777789999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHH
Q psy2177         574 VVLFGEAVESLLLKYGKGVVEEQFLLNRLAAAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLG  653 (677)
Q Consensus       574 ~~~~~~~~~~~l~~~g~~~~~~q~~l~rla~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~  653 (677)
                      +.+|+.+++.++.+||+.++++|..+.|||++++++|+|++++||||||||+|+|++|||+.+|++||.|+..++...+.
T Consensus       519 ~~~~~~~Ve~ll~k~~k~iv~~q~~l~rlA~~~~~iYam~a~isRASrS~~igl~~aDhEl~~at~~C~ea~~~~~~~l~  598 (634)
T KOG0137|consen  519 LARFQQVVEKLLTKHGKGIVEEQSVLQRLANVAINIYAMVAVISRASRSYSIGLPNADHELALATAICSEASLRVLRWLW  598 (634)
T ss_pred             HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCcchHHHHHHHHhhc
Q psy2177         654 ALNSGKKLDSYTKLGDIAKNELK  676 (677)
Q Consensus       654 ~l~~~~~~~~~~~~~~~~~~~~~  676 (677)
                      ++.++...+.|.++..+++++|+
T Consensus       599 ~~~~~~~~~~d~~i~~~sk~v~e  621 (634)
T KOG0137|consen  599 AASSGHVVNLDRNIVSLSKTVLE  621 (634)
T ss_pred             HhcccchhhhcHHHHHHHHHHHh
Confidence            99999888889999999999986

>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>PTZ00457 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PRK13026 acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>KOG0139|consensus Back     alignment and domain information
>KOG0140|consensus Back     alignment and domain information
>KOG0141|consensus Back     alignment and domain information
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>cd01151 GCD Glutaryl-CoA dehydrogenase Back     alignment and domain information
>PTZ00456 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit Back     alignment and domain information
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>cd01162 IBD Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase Back     alignment and domain information
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PRK12341 putative acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01156 IVD Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>PLN02636 acyl-coenzyme A oxidase Back     alignment and domain information
>cd01160 LCAD Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated Back     alignment and domain information
>PLN02519 isovaleryl-CoA dehydrogenase Back     alignment and domain information
>PLN02526 acyl-coenzyme A oxidase Back     alignment and domain information
>COG1960 CaiA Acyl-CoA dehydrogenases [Lipid metabolism] Back     alignment and domain information
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2 Back     alignment and domain information
>cd01158 SCAD_SBCAD Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases Back     alignment and domain information
>TIGR03204 pimC_large pimeloyl-CoA dehydrogenase, large subunit Back     alignment and domain information
>cd01153 ACAD_fadE5 Putative acyl-CoA dehydrogenases similar to fadE5 Back     alignment and domain information
>PLN02312 acyl-CoA oxidase Back     alignment and domain information
>PRK11561 isovaleryl CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information
>PLN02876 acyl-CoA dehydrogenase Back     alignment and domain information
>cd01154 AidB Proteins involved in DNA damage response, similar to the AidB gene product Back     alignment and domain information
>KOG0138|consensus Back     alignment and domain information
>cd01163 DszC Dibenzothiophene (DBT) desulfurization enzyme C Back     alignment and domain information
>PTZ00460 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd01150 AXO Peroxisomal acyl-CoA oxidase Back     alignment and domain information
>PLN02443 acyl-coenzyme A oxidase Back     alignment and domain information
>cd01159 NcnH Naphthocyclinone hydroxylase Back     alignment and domain information
>cd00567 ACAD Acyl-CoA dehydrogenase Back     alignment and domain information
>KOG1469|consensus Back     alignment and domain information
>KOG0135|consensus Back     alignment and domain information
>KOG0136|consensus Back     alignment and domain information
>TIGR02309 HpaB-1 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1 Back     alignment and domain information
>PF02771 Acyl-CoA_dh_N: Acyl-CoA dehydrogenase, N-terminal domain; InterPro: IPR006092 Mammalian Co-A dehydrogenases (1 Back     alignment and domain information
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1 Back     alignment and domain information
>COG2368 Aromatic ring hydroxylase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF08028 Acyl-CoA_dh_2: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR013107 Acyl Co-A dehydrogenases (1 Back     alignment and domain information
>PF09317 DUF1974: Domain of unknown function (DUF1974); InterPro: IPR015396 This C-terminal domain is functionally uncharacterised and is predominantly found in various prokaryotic acyl-coenzyme a dehydrogenases Back     alignment and domain information
>TIGR02310 HpaB-2 4-hydroxyphenylacetate 3-monooxygenase, oxygenase component Back     alignment and domain information
>PF11794 HpaB_N: 4-hydroxyphenylacetate 3-hydroxylase N terminal; InterPro: IPR024674 This domain is found in the N terminus of HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] Back     alignment and domain information
>PF03241 HpaB: 4-hydroxyphenylacetate 3-hydroxylase C terminal; InterPro: IPR024719 This C-terminal domain is found in HpaB, which encodes part of the 4-hydroxyphenylacetate 3-hydroxylase from Escherichia coli [] Back     alignment and domain information
>PF00441 Acyl-CoA_dh_1: Acyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006090 Mammalian Co-A dehydrogenases (1 Back     alignment and domain information
>cd01162 IBD Isobutyryl-CoA dehydrogenase Back     alignment and domain information
>cd01161 VLCAD Very long chain acyl-CoA dehydrogenase Back     alignment and domain information
>cd01157 MCAD Medium chain acyl-CoA dehydrogenase Back     alignment and domain information
>PRK03354 crotonobetainyl-CoA dehydrogenase; Validated Back     alignment and domain information
>PTZ00457 acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>cd00567 ACAD Acyl-CoA dehydrogenase Back     alignment and domain information
>TIGR03207 cyc_hxne_CoA_dh cyclohexanecarboxyl-CoA dehydrogenase Back     alignment and domain information
>KOG0139|consensus Back     alignment and domain information
>cd01151 GCD Glutaryl-CoA dehydrogenase Back     alignment and domain information
>PLN02526 acyl-coenzyme A oxidase Back     alignment and domain information
>PRK12341 putative acyl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PF14749 Acyl-CoA_ox_N: Acyl-coenzyme A oxidase N-terminal; PDB: 2FON_A 1W07_B 1IS2_B 2DDH_A Back     alignment and domain information
>TIGR03203 pimD_small pimeloyl-CoA dehydrogenase, small subunit Back     alignment and domain information
>cd01155 ACAD_FadE2 Acyl-CoA dehydrogenases similar to fadE2 Back     alignment and domain information
>PTZ00461 isovaleryl-CoA dehydrogenase; Provisional Back     alignment and domain information
>PLN02519 isovaleryl-CoA dehydrogenase Back     alignment and domain information
>cd01160 LCAD Long chain acyl-CoA dehydrogenase Back     alignment and domain information
>PRK09463 fadE acyl-CoA dehydrogenase; Reviewed Back     alignment and domain information
>cd01156 IVD Isovaleryl-CoA dehydrogenase Back     alignment and domain information
>KOG0137|consensus Back     alignment and domain information
>cd01152 ACAD_fadE6_17_26 Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query677
3b96_A587 Structural Basis For Substrate Fatty-Acyl Chain Spe 1e-153
3b96_A587 Structural Basis For Substrate Fatty-Acyl Chain Spe 2e-27
2uxw_A607 Crystal Structure Of Human Very Long Chain Acyl-coa 1e-153
2uxw_A607 Crystal Structure Of Human Very Long Chain Acyl-coa 2e-27
2z1q_A577 Crystal Structure Of Acyl Coa Dehydrogenase Length 1e-68
3owa_A597 Crystal Structure Of Acyl-Coa Dehydrogenase Complex 4e-53
1ukw_A379 Crystal Structure Of Medium-Chain Acyl-Coa Dehydrog 6e-47
1buc_A383 Three-Dimensional Structure Of Butyryl-Coa Dehydrog 1e-43
2jif_A404 Structure Of Human Short-Branched Chain Acyl-Coa De 5e-43
1jqi_A388 Crystal Structure Of Rat Short Chain Acyl-Coa Dehyd 7e-43
2vig_A391 Crystal Structure Of Human Short-Chain Acyl Coa Deh 1e-42
3pfd_A393 Crystal Structure Of An Acyl-Coa Dehydrogenase From 1e-42
1ws9_A387 Crystal Structure Of Project Id Tt0172 From Thermus 7e-40
1ivh_A394 Structure Of Human Isovaleryl-coa Dehydrogenase At 2e-39
2dvl_A372 Crystal Structure Of Project Tt0160 From Thermus Th 2e-38
3nf4_A387 Crystal Structure Of Acyl-Coa Dehydrogenase From My 3e-38
1ege_A396 Structure Of T255e, E376g Mutant Of Human Medium Ch 9e-37
1egd_A396 Structure Of T255e, E376g Mutant Of Human Medium Ch 1e-36
2a1t_A421 Structure Of The Human Mcad:etf E165betaa Complex L 1e-36
1udy_A396 Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaocta 3e-35
3mdd_A385 Crystal Structures Of Medium Chain Acyl-Coa Dehydro 4e-35
1rx0_A393 Crystal Structure Of Isobutyryl-Coa Dehydrogenase C 5e-33
3mpi_A397 Structure Of The Glutaryl-Coenzyme A Dehydrogenase 5e-32
3eom_A396 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehy 7e-32
3d6b_A395 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogena 9e-32
3gqt_A399 Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro 9e-32
2pg0_A385 Crystal Structure Of Acyl-Coa Dehydrogenase From Ge 2e-31
2eba_A385 Crystal Structure Of The Putative Glutaryl-coa Dehy 3e-27
3swo_A399 Crystal Structure Of A Glutaryl-Coa Dehydrogenase F 3e-26
3sf6_A403 Crystal Structure Of Glutaryl-Coa Dehydrogenase Fro 4e-26
2r0m_A394 The Effect Of A Glu370asp Mutation In Glutaryl-Coa 7e-26
1sir_A394 The Crystal Structure And Mechanism Of Human Glutar 7e-26
1siq_A392 The Crystal Structure And Mechanism Of Human Glutar 9e-26
2ix6_A449 Short Chain Specific Acyl-Coa Oxidase From Arabidop 2e-20
2ix5_A436 Short Chain Specific Acyl-Coa Oxidase From Arabidop 2e-20
3r7k_A403 Crystal Structure Of A Probable Acyl Coa Dehydrogen 4e-20
3oib_A403 Crystal Structure Of A Putative Acyl-Coa Dehydrogen 4e-20
1r2j_A366 Fkbi For Biosynthesis Of Methoxymalonyl Extender Un 2e-17
2wbi_A428 Crystal Structure Of Human Acyl-Coa Dehydrogenase 1 2e-15
4hr3_A415 Structure Of A Putative Acyl-Coa Dehydrogenase From 3e-13
3mkh_A438 Podospora Anserina Nitroalkane Oxidase Length = 438 2e-08
4doy_A437 Crystal Structure Of Dibenzothiophene Desulfurizati 5e-06
3djl_A541 Crystal Structure Of Alkylation Response Protein E. 1e-05
3d9f_A438 Nitroalkane Oxidase: Active Site Mutant S276a Cryst 7e-04
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain Specificity: Crystal Structure Of Human Very-Long-Chain Acyl-Coa Dehydrogenase Length = 587 Back     alignment and structure 
Iteration: 1

 Score =  539 bits (1388), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 253/361 (70%), Positives = 299/361 (82%)
Query: 52  FTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNT 111
           F + MF+GQL T+QVFPYP VL E+Q+  LK LV+PV++FF+EVNDP KND+LE VE  T
Sbjct: 5   FAVGMFKGQLTTDQVFPYPSVLNEEQTQFLKELVEPVSRFFEEVNDPAKNDALEMVEETT 64
Query: 112 LEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLV 171
            +GL +LGAF LQVP +LGG+GL NTQYAR+VEIVG +DL VGI LGAHQSIGFKGILL 
Sbjct: 65  WQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLF 124
Query: 172 GNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISN 231
           G   QK KYLP++++G+  AAFCLTEP+SGSDA SI+T AV SP GK+Y LNGSK+WISN
Sbjct: 125 GTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISN 184
Query: 232 GGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYY 291
           GG A+I TVFA+TPV D  TG V +K+TAF+VER FGG+T GPPEKKMGIKASNTAEV++
Sbjct: 185 GGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFF 244
Query: 292 EDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRR 351
           + V+VP ENVLG VG+GFKVAM ILNNGRFGMAAALAGTMR +  KAVDHAT R QFG +
Sbjct: 245 DGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEK 304
Query: 352 IDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDE 411
           I +FG IQEKLARM +L YVTES+AYM+S NMD G+ D+ +EAAISK+F SEAAW VTDE
Sbjct: 305 IHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKIFGSEAAWKVTDE 364
Query: 412 A 412
Sbjct: 365 C 365
>pdb|3B96|A Chain A, Structural Basis For Substrate Fatty-Acyl Chain Specificity: Crystal Structure Of Human Very-Long-Chain Acyl-Coa Dehydrogenase Length = 587 Back     alignment and structure
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa Dehydrogenase (acadvl) Length = 607 Back     alignment and structure
>pdb|2UXW|A Chain A, Crystal Structure Of Human Very Long Chain Acyl-coa Dehydrogenase (acadvl) Length = 607 Back     alignment and structure
>pdb|2Z1Q|A Chain A, Crystal Structure Of Acyl Coa Dehydrogenase Length = 577 Back     alignment and structure
>pdb|3OWA|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase Complexed With Fad From Bacillus Anthracis Length = 597 Back     alignment and structure
>pdb|1UKW|A Chain A, Crystal Structure Of Medium-Chain Acyl-Coa Dehydrogenase From Thermus Thermophilus Hb8 Length = 379 Back     alignment and structure
>pdb|1BUC|A Chain A, Three-Dimensional Structure Of Butyryl-Coa Dehydrogenase From Megasphaera Elsdenii Length = 383 Back     alignment and structure
>pdb|2JIF|A Chain A, Structure Of Human Short-Branched Chain Acyl-Coa Dehydrogenase (Acadsb) Length = 404 Back     alignment and structure
>pdb|1JQI|A Chain A, Crystal Structure Of Rat Short Chain Acyl-Coa Dehydrogenase Complexed With Acetoacetyl-Coa Length = 388 Back     alignment and structure
>pdb|2VIG|A Chain A, Crystal Structure Of Human Short-Chain Acyl Coa Dehydrogenase Length = 391 Back     alignment and structure
>pdb|3PFD|A Chain A, Crystal Structure Of An Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Reduced Flavin Adenine Dinucleotide Solved By Combined Iodide Ion Sad Mr Length = 393 Back     alignment and structure
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus Thermophilus Hb8 Length = 387 Back     alignment and structure
>pdb|1IVH|A Chain A, Structure Of Human Isovaleryl-coa Dehydrogenase At 2.6 Angstroms Resolution: Structural Basis For Substrate Specificity Length = 394 Back     alignment and structure
>pdb|2DVL|A Chain A, Crystal Structure Of Project Tt0160 From Thermus Thermophilus Hb8 Length = 372 Back     alignment and structure
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Mycobacterium Thermoresistibile Bound To Flavin Adenine Dinucleotide Length = 387 Back     alignment and structure
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 Back     alignment and structure
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain Acyl- Coa Dehydrogenase Length = 396 Back     alignment and structure
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex Length = 421 Back     alignment and structure
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With 3-Thiaoctanoyl-Coa Length = 396 Back     alignment and structure
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase From Pig Liver Mitochondria With And Without Substrate Length = 385 Back     alignment and structure
>pdb|1RX0|A Chain A, Crystal Structure Of Isobutyryl-Coa Dehydrogenase Complexed With SubstrateLIGAND. Length = 393 Back     alignment and structure
>pdb|3MPI|A Chain A, Structure Of The Glutaryl-Coenzyme A Dehydrogenase Glutaryl-Coa Complex Length = 397 Back     alignment and structure
>pdb|3EOM|A Chain A, 2.4 A Crystal Structure Of Native Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 396 Back     alignment and structure
>pdb|3D6B|A Chain A, 2.2 A Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei Length = 395 Back     alignment and structure
>pdb|3GQT|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Burkholderia Pseudomallei With Fragment (1,4-Dimethyl-1,2,3,4- Tetrahydroquinoxalin-6-Yl)methylamine Length = 399 Back     alignment and structure
>pdb|2PG0|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From Geobacillus Kaustophilus Length = 385 Back     alignment and structure
>pdb|2EBA|A Chain A, Crystal Structure Of The Putative Glutaryl-coa Dehydrogenase From Thermus Thermophilus Length = 385 Back     alignment and structure
>pdb|3SWO|A Chain A, Crystal Structure Of A Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis In Complex With Fadh2 Length = 399 Back     alignment and structure
>pdb|3SF6|A Chain A, Crystal Structure Of Glutaryl-Coa Dehydrogenase From Mycobacterium Smegmatis Length = 403 Back     alignment and structure
>pdb|2R0M|A Chain A, The Effect Of A Glu370asp Mutation In Glutaryl-Coa Dehydrogenase On Proton Transfer To The Dienolate Intermediate Length = 394 Back     alignment and structure
>pdb|1SIR|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 394 Back     alignment and structure
>pdb|1SIQ|A Chain A, The Crystal Structure And Mechanism Of Human Glutaryl-Coa Dehydrogenase Length = 392 Back     alignment and structure
>pdb|2IX6|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 Length = 449 Back     alignment and structure
>pdb|2IX5|A Chain A, Short Chain Specific Acyl-Coa Oxidase From Arabidopsis Thaliana, Acx4 In Complex With Acetoacetyl-Coa Length = 436 Back     alignment and structure
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase From Mycobacterium Abscessus Atcc 19977 DSM 44196 Length = 403 Back     alignment and structure
>pdb|3OIB|A Chain A, Crystal Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Smegmatis, Iodide Soak Length = 403 Back     alignment and structure
>pdb|1R2J|A Chain A, Fkbi For Biosynthesis Of Methoxymalonyl Extender Unit Of Fk520 Polyketide Immunosuppresant Length = 366 Back     alignment and structure
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11 Length = 428 Back     alignment and structure
>pdb|4HR3|A Chain A, Structure Of A Putative Acyl-Coa Dehydrogenase From Mycobacterium Abscessus Length = 415 Back     alignment and structure
>pdb|3MKH|A Chain A, Podospora Anserina Nitroalkane Oxidase Length = 438 Back     alignment and structure
>pdb|4DOY|A Chain A, Crystal Structure Of Dibenzothiophene Desulfurization Enzyme C Length = 437 Back     alignment and structure
>pdb|3DJL|A Chain A, Crystal Structure Of Alkylation Response Protein E. Coli Aidb Length = 541 Back     alignment and structure
>pdb|3D9F|A Chain A, Nitroalkane Oxidase: Active Site Mutant S276a Crystallized With 1- Nitrohexane Length = 438 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query677
2uxw_A607 VERY-long-chain specific acyl-COA dehydrogenase; f 0.0
2uxw_A607 VERY-long-chain specific acyl-COA dehydrogenase; f 2e-36
2uxw_A 607 VERY-long-chain specific acyl-COA dehydrogenase; f 2e-15
2z1q_A577 Acyl-COA dehydrogenase; FAD, structural genomics, 1e-167
2z1q_A577 Acyl-COA dehydrogenase; FAD, structural genomics, 4e-16
3owa_A597 Acyl-COA dehydrogenase; structural genomics, cente 1e-166
3owa_A597 Acyl-COA dehydrogenase; structural genomics, cente 8e-22
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 1e-114
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 1e-113
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 1e-113
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 1e-112
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 1e-112
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 1e-112
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 1e-111
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 1e-110
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 1e-109
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 1e-108
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 1e-108
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 1e-106
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 1e-105
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 2e-98
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 1e-96
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 2e-95
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 5e-95
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 1e-94
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 2e-94
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 2e-89
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 2e-86
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 5e-86
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 6e-85
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 9e-85
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 1e-83
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 9e-83
2ddh_A661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 4e-55
1w07_A659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 2e-49
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 5e-49
2jbr_A422 P-hydroxyphenylacetate hydroxylase C2 oxygenase C; 2e-37
3djl_A541 Protein AIDB; alpha helix, beta-barrel, FAD, flavo 4e-35
3hwc_A515 Chlorophenol-4-monooxygenase component 2; beta bar 1e-31
2yyk_A481 4-hydroxyphenylacetate-3-hydroxylase; structurome, 6e-26
2rfq_A394 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1 2e-23
1u8v_A490 Gamma-aminobutyrate metabolism dehydratase/isomera 9e-23
2or0_A414 Hydroxylase; APC7385, rhodococcus SP. RHA1, struct 7e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607 Back     alignment and structure
 Score =  565 bits (1459), Expect = 0.0
 Identities = 260/380 (68%), Positives = 309/380 (81%)

Query: 39  AKEEQKAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDP 98
               +    +S SF + MF+GQL T+QVFPYP VL E+Q+  LK LV+PV++FF+EVNDP
Sbjct: 12  DLGTENLYFQSMSFAVGMFKGQLTTDQVFPYPSVLNEEQTQFLKELVEPVSRFFEEVNDP 71

Query: 99  LKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLG 158
            KND+LE VE  T +GL +LGAF LQVP +LGG+GL NTQYAR+VEIVG +DL VGI LG
Sbjct: 72  AKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLG 131

Query: 159 AHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGK 218
           AHQSIGFKGILL G   QK KYLP++++G+  AAFCLTEP+SGSDA SI+T AV SP GK
Sbjct: 132 AHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGK 191

Query: 219 HYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKK 278
           +Y LNGSK+WISNGG A+I TVFA+TPV D  TG V +K+TAF+VER FGG+T GPPEKK
Sbjct: 192 YYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKK 251

Query: 279 MGIKASNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKA 338
           MGIKASNTAEV+++ V+VP ENVLG VG+GFKVAM ILNNGRFGMAAALAGTMR +  KA
Sbjct: 252 MGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKA 311

Query: 339 VDHATQRVQFGRRIDSFGTIQEKLARMALLHYVTESLAYMISGNMDNGSQDYHLEAAISK 398
           VDHAT R QFG +I +FG IQEKLARM +L YVTES+AYM+S NMD G+ D+ +EAAISK
Sbjct: 312 VDHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISK 371

Query: 399 VFASEAAWYVTDEAIQILGG 418
           +F SEAAW VTDE IQI+GG
Sbjct: 372 IFGSEAAWKVTDECIQIMGG 391
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607 Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Length = 607 Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577 Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Length = 577 Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597 Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Length = 597 Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Length = 391 Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Length = 387 Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Length = 404 Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Length = 372 Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Length = 393 Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Length = 383 Back     alignment and structure
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Length = 379 Back     alignment and structure
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Length = 396 Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Length = 387 Back     alignment and structure
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 394 Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Length = 393 Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Length = 366 Back     alignment and structure
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Length = 397 Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Length = 403 Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Length = 403 Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Length = 385 Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Length = 438 Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Length = 439 Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Length = 439 Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Length = 396 Back     alignment and structure
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Length = 436 Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Length = 395 Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Length = 385 Back     alignment and structure
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Length = 399 Back     alignment and structure
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Length = 403 Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Length = 392 Back     alignment and structure
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Length = 661 Back     alignment and structure
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Length = 659 Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Length = 428 Back     alignment and structure
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Length = 422 Back     alignment and structure
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Length = 541 Back     alignment and structure
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Length = 515 Back     alignment and structure
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Length = 481 Back     alignment and structure
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Length = 394 Back     alignment and structure
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Length = 490 Back     alignment and structure
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Length = 414 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query677
2uxw_A607 VERY-long-chain specific acyl-COA dehydrogenase; f 100.0
3owa_A597 Acyl-COA dehydrogenase; structural genomics, cente 100.0
2z1q_A577 Acyl-COA dehydrogenase; FAD, structural genomics, 100.0
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 100.0
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 100.0
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 100.0
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 100.0
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 100.0
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 100.0
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 100.0
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 100.0
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 100.0
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 100.0
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 100.0
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 100.0
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 100.0
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 100.0
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 100.0
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 100.0
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 100.0
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 100.0
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 100.0
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 100.0
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 100.0
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 100.0
4hr3_A415 Putative acyl-COA dehydrogenase; ssgcid, seattle s 100.0
3mkh_A438 Nitroalkane oxidase; oxidoreductase flavoenzyme, a 100.0
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 100.0
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 100.0
3mxl_A395 Nitrososynthase; flavin monooxygenase, acyl-COA de 100.0
3djl_A541 Protein AIDB; alpha helix, beta-barrel, FAD, flavo 100.0
2or0_A414 Hydroxylase; APC7385, rhodococcus SP. RHA1, struct 100.0
2jbr_A422 P-hydroxyphenylacetate hydroxylase C2 oxygenase C; 100.0
3m9v_A439 FAD-dependent oxidoreductase; KIJD3, fatty acyl-CO 100.0
2rfq_A394 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1 100.0
1w07_A659 Acyl-COA oxidase; oxidoreductase, peroxisomal beta 100.0
2ddh_A661 Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundl 100.0
1u8v_A490 Gamma-aminobutyrate metabolism dehydratase/isomera 100.0
2yyk_A481 4-hydroxyphenylacetate-3-hydroxylase; structurome, 100.0
3hwc_A515 Chlorophenol-4-monooxygenase component 2; beta bar 100.0
4g5e_A517 2,4,6-trichlorophenol 4-monooxygenase; oxidoreduct 99.95
3owa_A597 Acyl-COA dehydrogenase; structural genomics, cente 90.98
1rx0_A393 Acyl-COA dehydrogenase family member 8, mitochondr 89.1
3p4t_A403 Putative acyl-COA dehydrogenase; ssgcid, structura 89.04
2ix5_A436 Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, 88.29
2pg0_A385 Acyl-COA dehydrogenase; GK1316, geobacillus kausto 87.88
3ii9_A396 Glutaryl-COA dehydrogenase; slipchip, microfluidic 87.55
1siq_A392 GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrog 86.75
2vig_A391 Short-chain specific acyl-COA dehydrogenase,; fatt 86.69
3pfd_A393 Acyl-COA dehydrogenase; structural genomics, seatt 86.57
2eba_A385 Putative glutaryl-COA dehydrogenase; thermus therm 86.45
3r7k_A403 Probable acyl COA dehydrogenase; ssgcid, structura 86.02
1buc_A383 Butyryl-COA dehydrogenase; acyl-COA dehydrogenase 85.78
2dvl_A372 Acyl-COA dehydrogenase; structural genomics, NPPSF 85.26
1ukw_A379 Acyl-COA dehydrogenase; oxidoreductase, riken stru 84.92
3mpi_A397 Glutaryl-COA dehydrogenase; alpha-beta fold, oxido 84.72
1r2j_A366 Protein FKBI; polyketide synthase, polyketide, acy 84.62
2jif_A404 Short/branched chain specific acyl-COA dehydrogen; 84.38
2rfq_A394 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1 84.22
3swo_A399 Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA d 84.22
2d29_A387 Acyl-COA dehydrogenase; structural genomics, NPPSF 83.98
2wbi_A428 Acyl-COA dehydrogenase family member 11; human, ph 83.51
3sf6_A403 Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SB 83.49
2c12_A439 Nitroalkane oxidase; oxidoreductase, flavoenzyme, 83.39
1egd_A396 Medium chain acyl-COA dehydrogenase; flavoprotein, 83.34
2uxw_A 607 VERY-long-chain specific acyl-COA dehydrogenase; f 82.83
4hr3_A415 Putative acyl-COA dehydrogenase; ssgcid, seattle s 82.25
1ivh_A394 Isovaleryl-COA dehydrogenase; oxidoreductase, acyl 81.79
2z1q_A 577 Acyl-COA dehydrogenase; FAD, structural genomics, 80.97
3nf4_A387 Acyl-COA dehydrogenase; seattle structural genomic 80.87
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Back     alignment and structure
Probab=100.00  E-value=3.9e-97  Score=852.37  Aligned_cols=578  Identities=58%  Similarity=0.928  Sum_probs=521.2

Q ss_pred             hhcccCcchhHhhccCCCCccccCCCCCCCChhhHHHHHHHHHHHHHHHHhhCCCcccCcCCCCCHHHHHHHHHcCCCCC
Q psy2177          44 KAAKESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGLWDLGAFSL  123 (677)
Q Consensus        44 ~~~~~~~~f~~~lf~g~~~~~~~~~~p~~l~~e~~~~~~~l~~~~~~f~~~~~~p~~~d~~~~~p~e~~~~l~~~Gl~~l  123 (677)
                      ..++++.||.+++|.|+++++++|+||+.+++|++++++++++.+++|+++.++|...|..+.+|+++|+.|++.||+++
T Consensus        17 ~~~~~~~~~~~~lf~g~~~~~~~~~~p~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~~~p~~~~~~l~e~Gl~~l   96 (607)
T 2uxw_A           17 NLYFQSMSFAVGMFKGQLTTDQVFPYPSVLNEEQTQFLKELVEPVSRFFEEVNDPAKNDALEMVEETTWQGLKELGAFGL   96 (607)
T ss_dssp             ----CCCCHHHHHTTTCCCCTTTSSCCCCCCHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHTSCCHHHHHHHHHTTTTCT
T ss_pred             cCCCCCccHHHHhcCCCCCHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHhccccCCCHHHHHHHHHcCCcCC
Confidence            57889999999999999999999999998999999999999999999999988887777888999999999999999999


Q ss_pred             CCcccCCCCCCCHHHHHHHHHHHhccCchhHHHHHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCC
Q psy2177         124 QVPQDLGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSD  203 (677)
Q Consensus       124 ~vP~eyGG~Gls~~~~~~v~e~la~~d~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD  203 (677)
                      .+|++|||.|++..+++.+.|++++.|+++++++++|.+++...|..+|+++||++|||++++|++++|+++|||++|||
T Consensus        97 ~~P~e~GG~gl~~~~~~~v~e~l~~~~~s~a~~~~~~~~~g~~~l~~~Gt~eqk~~~Lp~l~~G~~~~~~alTEp~aGSD  176 (607)
T 2uxw_A           97 QVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSD  176 (607)
T ss_dssp             TSCGGGTSCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHTTTTHHHHHHCCHHHHHHHHHHHHTTSSCEEEECCBTTBSSC
T ss_pred             CCChhhCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhCCCeEEEEEecCCCCCCC
Confidence            99999999999999999999999999999999998888777788899999999999999999999999999999999999


Q ss_pred             CCCCceEEEEcCCCCEEEEEEEEEeecCccccCEEEEEEEcCCCCCCCCcccCeEEEEEEecCCCCeeeCCCCCcCCCCC
Q psy2177         204 AGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKA  283 (677)
Q Consensus       204 ~~~~~T~A~~~~dG~~y~LnG~K~~isna~~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~~~GV~v~~~~~~~G~rg  283 (677)
                      +.+++|+|++++||++|+|||+|+||||++.||+++|+|+++..+++.|.+.+|+++|+||++.|||++.+.|+++|+++
T Consensus       177 ~~~~~t~A~~~~dG~~y~LnG~K~~is~~~~Ad~~lV~Ar~~~~~~~~g~~~~gis~flVp~~~~Gv~v~~~~~~~G~rg  256 (607)
T 2uxw_A          177 AASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKA  256 (607)
T ss_dssp             GGGCCCEEEECTTSSEEEEEEEEEEEETTTTCSEEEEEEEEEEECTTTCCEEEEEEEEEEEGGGSSEEECCCCCCSSCTT
T ss_pred             cccceeEEEEeCCCCEEEEEeEEEeecCCcccCEEEEEEEecCCCcccCCCCCceEEEEEeCCCCCeEEecCccccCCCC
Confidence            99999999998888889999999999999999999999999643322232236899999999999999999999999999


Q ss_pred             CCceEEEEcceecccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCcHHHHHHHH
Q psy2177         284 SNTAEVYYEDVKVPVENVLGGVGNGFKVAMQILNNGRFGMAAALAGTMRSVTKKAVDHATQRVQFGRRIDSFGTIQEKLA  363 (677)
Q Consensus       284 ~~t~~v~fddV~VP~~~lLG~~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~~a~~R~qfg~pi~~~~~vq~~La  363 (677)
                      +++++|.|+||+||.+++||.+|+|++.++.+++.+|+.+++.++|+++++++.+++|+++|+|||+||+++|.+|++|+
T Consensus       257 ~~t~~v~fddv~VP~~~llG~~g~G~~~~~~~l~~~Rl~~aa~~~G~a~~al~~a~~ya~~R~qfG~pi~~~~~vq~~La  336 (607)
T 2uxw_A          257 SNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKLA  336 (607)
T ss_dssp             SCEEEEEEEEEEEEGGGEESSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEETTEEGGGSHHHHHHHH
T ss_pred             CCeeEEEeccEEecHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCchhhcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccchhhhhhHHHHhHHHHHHhh
Q psy2177         364 RMALLHYVTESLAYMISGNMDNGSQDYHLEAAISKVFASEAAWYVTDEAIQILGGINLLLGRLASASAAVKAKEEQKAAK  443 (677)
Q Consensus       364 ~m~~~~~aa~al~~~~a~~~d~~~~~~~~~~a~aK~~ase~a~~v~~~a~qi~GG~G~~~g~~~~~~~~~~~~~~~~~~~  443 (677)
                      +|.+.+++++++++.++..+|.+.++..++++++|+++++.+++++++++|++||+||+.             +      
T Consensus       337 ~~~~~~eaaral~~~aa~~~d~~~~~~~~~~~~aK~~~se~a~~v~~~a~qv~GG~G~~~-------------e------  397 (607)
T 2uxw_A          337 RMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMK-------------E------  397 (607)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSS-------------T------
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC-------------c------
Confidence            999999999999999999999876666789999999999999999999999999999999             8      


Q ss_pred             hhhHHHhhhhhcccCCCCCCChhhhhhhhhhhhhhhhcCCccccccCchHHhhhccCCCcchhHHHHHHHHhhhHHHHHH
Q psy2177         444 ESQSFTMNMFRGQLNTNQVFPYPEVLTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGIQYAGGHLRELQK  523 (677)
Q Consensus       444 ~~~~~~~~~~~~~~~~~~~~~ler~~RD~~~~~ar~~~~pi~~i~eGtn~i~~~~~~~~~~~ia~~~l~~~~~~l~~~~~  523 (677)
                                         +|++|+|||     ++     ++.||||||+|++++       |++.++|++++.++...+
T Consensus       398 -------------------~~l~r~~Rd-----a~-----~~~i~eGt~~i~~~~-------ia~~glq~~~~~~~~~~~  441 (607)
T 2uxw_A          398 -------------------PGVERVLRD-----LR-----IFRIFEGTNDILRLF-------VALQGCMDKGKELSGLGS  441 (607)
T ss_dssp             -------------------TSHHHHHHH-----HG-----GGGTSSSCHHHHHHH-------HHHHHHHHHHHHHHGGGC
T ss_pred             -------------------cHHHHHHHh-----cc-----cceeeCChHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence                               999999999     99     999999999999999       999999998888766677


Q ss_pred             HhcCCCCchhHHHHHHHHHHHHHhcCCCCCCCccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q psy2177         524 AFKNPTAHLGLIIGEVKKRGLKSIGLSTPPSLHHVVHANLAESGVLCSKSVVLFGEAVESLLLKYGKGVVEEQFLLNRLA  603 (677)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~q~~l~rla  603 (677)
                      ++++|..+.+..++.+.+.+.+.++......+.+..++.++..++.+++.+.+|..+++.++.+||++++++|+++.||+
T Consensus       442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~  521 (607)
T 2uxw_A          442 ALKNPFGNAGLLLGEAGKQLRRRAGLGSGLSLSGLVHPELSRSGELAVRALEQFATVVEAKLIKHKKGIVNEQFLLQRLA  521 (607)
T ss_dssp             SCCCTTC--------------------CCCCCBTTBCGGGHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGGCHHHHHHHH
T ss_pred             HhhcccccchHHHHHHHHHHHHHhhhcccccccccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            88888888888888887777665543322122333478899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCCcchHHHHHHHHhhc
Q psy2177         604 AAAFDTYTMAVVLSRATRSLNKNLPSASHEQLLAELWCYEAAERVSQNLGALNSG-KKLDSYTKLGDIAKNELK  676 (677)
Q Consensus       604 ~~~~~ly~~~a~l~ra~~~~~~~~~~~~~e~~la~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~  676 (677)
                      |+++++|+|+++|+|+++++++|++++++|+.+|++||.++.+||+.++++|.++ .+.|.|+++++||++|++
T Consensus       522 d~~~~~y~~~~~l~r~~~~~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~  595 (607)
T 2uxw_A          522 DGAIDLYAMVVVLSRASRSLSEGHPTAQHEKMLCDTWCIEAAARIREGMAALQSDPWQQELYRNFKSISKALVE  595 (607)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998 889999999999999985
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Back     alignment and structure
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Back     alignment and structure
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Back     alignment and structure
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Back     alignment and structure
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Back     alignment and structure
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Back     alignment and structure
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus} Back     alignment and structure
>3mkh_A Nitroalkane oxidase; oxidoreductase flavoenzyme, acyl-COA dehydrogen flavoprotein, oxidoreductase; HET: FAD; 2.00A {Podospora anserina} Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Back     alignment and structure
>3mxl_A Nitrososynthase; flavin monooxygenase, acyl-COA dehydrogenas oxidoreductase; 3.15A {Micromonospora carbonacea} Back     alignment and structure
>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} PDB: 3u33_A* Back     alignment and structure
>2or0_A Hydroxylase; APC7385, rhodococcus SP. RHA1, structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Rhodococcus SP} Back     alignment and structure
>2jbr_A P-hydroxyphenylacetate hydroxylase C2 oxygenase C; flavoenzyme hydroxylase, oxidoreductase; 2.3A {Acinetobacter baumannii} PDB: 2jbs_A* 2jbt_A* Back     alignment and structure
>3m9v_A FAD-dependent oxidoreductase; KIJD3, fatty acyl-COA dehydrogenase family, kijanose, kijani FAD, flavoprotein; HET: TYD; 2.05A {Actinomadura kijaniata} Back     alignment and structure
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Back     alignment and structure
>1w07_A Acyl-COA oxidase; oxidoreductase, peroxisomal beta-oxidation, FAD cofactor; HET: FAD; 2.0A {Arabidopsis thaliana} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 2fon_A* Back     alignment and structure
>2ddh_A Acyl-COA oxidase; beta barrel, alpha UP-DOWN bundle, oxidoreductase; HET: FAD HXD; 2.07A {Rattus norvegicus} SCOP: a.29.3.2 a.29.3.2 e.6.1.2 PDB: 1is2_A* Back     alignment and structure
>1u8v_A Gamma-aminobutyrate metabolism dehydratase/isomerase; ALFA-helixes, beta-strands, lyase; HET: FAD; 1.60A {Clostridium aminobutyricum} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2yyk_A 4-hydroxyphenylacetate-3-hydroxylase; structurome, riken spring-8 center, oxygnase component, 4- hydroxyphenylacetate 3-monooxygenase; 1.60A {Thermus thermophilus} PDB: 2yyl_A* 2yym_A* 2yyi_A* 2yyg_A* 2yyj_A* Back     alignment and structure
>3hwc_A Chlorophenol-4-monooxygenase component 2; beta barrel, helix bundle, oxidoreductase; 2.50A {Burkholderia cepacia} Back     alignment and structure
>4g5e_A 2,4,6-trichlorophenol 4-monooxygenase; oxidoreductase; 2.50A {Cupriavidus necator JMP134} Back     alignment and structure
>3owa_A Acyl-COA dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-structure, beta-barrel; HET: MSE FAD 1PE; 1.97A {Bacillus anthracis} Back     alignment and structure
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial; flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC; 1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3p4t_A Putative acyl-COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FAO; 1.70A {Mycobacterium smegmatis} PDB: 3oib_A* Back     alignment and structure
>2ix5_A Acyl-coenzyme A oxidase 4, peroxisomal; FAD, ACX4, flavin, peroxisome, glyoxysome, fatty acid metabo lipid metabolism, acyl-COA oxidase; HET: CAA FAD; 2.7A {Arabidopsis thaliana} PDB: 2ix6_A* Back     alignment and structure
>2pg0_A Acyl-COA dehydrogenase; GK1316, geobacillus kaustophilus HTA structural genomics, PSI, protein structure initiative; HET: FAD; 1.80A {Geobacillus kaustophilus} Back     alignment and structure
>3ii9_A Glutaryl-COA dehydrogenase; slipchip, microfluidics, screening, optimization, protein crystallization, structural genomics; HET: PGE PG4; 1.74A {Burkholderia pseudomallei 1710B} PDB: 3eon_A* 3eom_A* 3gqt_A* 3gnc_A* 3d6b_A Back     alignment and structure
>1siq_A GCD, glutaryl-COA dehydrogenase; acyl-COA dehydrogenase, decarboxylation, flavin protein, oxidoreductase; HET: FAD; 2.10A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 2r0n_A* 1sir_A* 2r0m_A* Back     alignment and structure
>2vig_A Short-chain specific acyl-COA dehydrogenase,; fatty acid metabolism, FAD, polymorphism, flavoprotein, mitochondrion, disease mutation; HET: FAD COS; 1.9A {Homo sapiens} PDB: 1jqi_A* Back     alignment and structure
>3pfd_A Acyl-COA dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: FDA; 2.10A {Mycobacterium thermoresistibile} Back     alignment and structure
>2eba_A Putative glutaryl-COA dehydrogenase; thermus thermophilius, FAD, STRU genomics, NPPSFA; HET: FAD; 2.21A {Thermus thermophilus} Back     alignment and structure
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: FDA; 2.50A {Mycobacterium abscessus} Back     alignment and structure
>1buc_A Butyryl-COA dehydrogenase; acyl-COA dehydrogenase short-chain acyl-COA dehydrogenase, flavoprotein, oxidoreductase; HET: CAA FAD; 2.50A {Megasphaera elsdenii} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2dvl_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project on protein STR and functional analyses; HET: FAD; 2.50A {Thermus thermophilus} Back     alignment and structure
>1ukw_A Acyl-COA dehydrogenase; oxidoreductase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: FAD; 2.40A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>3mpi_A Glutaryl-COA dehydrogenase; alpha-beta fold, oxidoreductase; HET: FAD GRA; 2.05A {Desulfococcus multivorans} PDB: 3mpj_A* Back     alignment and structure
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA dehydrogenase, , aldehyde dehydrogenase, oxidoreductase; HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2jif_A Short/branched chain specific acyl-COA dehydrogen; mitochondrion, oxidoreductase, transit peptide, fatty acid metabolism, FAD, flavoprotein; HET: FAD COS; 2.0A {Homo sapiens} Back     alignment and structure
>2rfq_A 3-HSA hydroxylase, oxygenase; rhodococcus SP. RHA1, structural genomics protein structure initiative, midwest center for structural genomics, MCSG; HET: 1PS; 1.65A {Rhodococcus SP} PDB: 3aff_A 3afe_A Back     alignment and structure
>3swo_A Glutaryl-COA dehydrogenase; ssgcid, glutaryl-COA dehdrogenase, mycobacerium smegmatis, S genomics; HET: FDA; 1.45A {Mycobacterium smegmatis} Back     alignment and structure
>2d29_A Acyl-COA dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: FAD; 1.65A {Thermus thermophilus} SCOP: a.29.3.1 e.6.1.1 PDB: 1ws9_A 2cx9_A* Back     alignment and structure
>2wbi_A Acyl-COA dehydrogenase family member 11; human, phosphoprotein, oxidoreducta; HET: FAD; 2.80A {Homo sapiens} Back     alignment and structure
>3sf6_A Glutaryl-COA dehydrogenase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: FDA; 1.70A {Mycobacterium smegmatis} Back     alignment and structure
>2c12_A Nitroalkane oxidase; oxidoreductase, flavoenzyme, acyl-COA dehydrogenase, long cell EDGE, FAD, inhibitor, flavoprotein; HET: SPM FAD PE4; 2.07A {Fusarium oxysporum} SCOP: a.29.3.1 e.6.1.1 PDB: 2c0u_A* 2zaf_A* 2reh_A* 3d9g_A* 3d9f_A* 3d9d_A* 3d9e_A* 3fcj_A* Back     alignment and structure
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A* 3mdd_A* 3mde_A* Back     alignment and structure
>2uxw_A VERY-long-chain specific acyl-COA dehydrogenase; fatty acid metabolism, transit peptide, disease mutation, LI metabolism, coenzyme A dehydrogenase; HET: FAD TH3; 1.45A {Homo sapiens} PDB: 3b96_A* Back     alignment and structure
>4hr3_A Putative acyl-COA dehydrogenase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: FAD; 1.80A {Mycobacterium abscessus} Back     alignment and structure
>1ivh_A Isovaleryl-COA dehydrogenase; oxidoreductase, acyl-COA dehydrogenase, flavoprotein, isovaleric acidemia; HET: FAD COS; 2.60A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1 Back     alignment and structure
>2z1q_A Acyl-COA dehydrogenase; FAD, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: FAD; 2.30A {Thermus thermophilus} Back     alignment and structure
>3nf4_A Acyl-COA dehydrogenase; seattle structural genomics center for infectious disease, S FAD, FADH, tuberculosis, oxidoredu; HET: FAD; 2.35A {Mycobacterium thermoresistibile} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 677
d1ivha2236 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM 3e-48
d1jqia2231 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM do 5e-41
d3mdea2231 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydroge 2e-37
d1rx0a2231 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {H 1e-36
d2d29a2233 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus 2e-35
d1ukwa2227 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydroge 2e-34
d1siqa2236 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH 2e-34
d2ddha3267 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, 3e-29
d1buca2232 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM do 3e-29
d1w07a3271 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domai 4e-27
d1u8va2275 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase 1e-23
d2c12a2259 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium ox 1e-19
d1ukwa1152 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydro 6e-18
d1rx0a1153 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase 5e-16
d1r2ja2210 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygro 7e-16
d1buca1151 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C- 1e-14
d2d29a1153 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Therm 2e-14
d1w07a1189 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, do 5e-14
d2ddha1183 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase- 3e-13
d3mdea1154 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydro 1e-11
d1ivha1151 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, 3e-11
d1jqia1153 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C- 1e-10
d1r2ja1153 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hy 5e-08
d1siqa1154 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GC 8e-07
d2c12a1170 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium 2e-05
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Isovaleryl-coa dehydrogenase, NM domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  167 bits (423), Expect = 3e-48
 Identities = 79/236 (33%), Positives = 126/236 (53%), Gaps = 13/236 (5%)

Query: 73  LTEDQSDTLKMLVDPVTKFFDEVNDPLKNDSLETVEPNTLEGLW----DLGAFSLQVPQD 128
           L+E+Q    + L   + KF  E   P   +   + E   L   W    +LG   +  P  
Sbjct: 8   LSEEQ----RQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQ 63

Query: 129 LGGLGLTNTQYARMVEIVGGNDLAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGK 188
            GG GL   ++  ++E +     AVG+  GAH ++    ++  GN  QK KYLP++ +G+
Sbjct: 64  YGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGE 123

Query: 189 EFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWISNGGFAEIMTVFAQTPVKD 248
              A  ++EP +GSD  S+K +A     G HYILNG+K WI+NG  A+++ V+A+T +  
Sbjct: 124 YIGALAMSEPNAGSDVVSMKLKAE--KKGNHYILNGNKFWITNGPDADVLIVYAKTDLAA 181

Query: 249 EKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGG 304
               +    +TAFIVE+   G ++     K+G++ SNT E+ +ED K+P  N+LG 
Sbjct: 182 VPASR---GITAFIVEKGMPGFSTSKKLDKLGMRGSNTCELIFEDCKIPAANILGH 234
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 231 Back     information, alignment and structure
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Length = 231 Back     information, alignment and structure
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 231 Back     information, alignment and structure
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 233 Back     information, alignment and structure
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Length = 227 Back     information, alignment and structure
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 236 Back     information, alignment and structure
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 267 Back     information, alignment and structure
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Length = 232 Back     information, alignment and structure
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 271 Back     information, alignment and structure
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Length = 275 Back     information, alignment and structure
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 259 Back     information, alignment and structure
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Length = 152 Back     information, alignment and structure
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 153 Back     information, alignment and structure
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 210 Back     information, alignment and structure
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Length = 151 Back     information, alignment and structure
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 153 Back     information, alignment and structure
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 189 Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 183 Back     information, alignment and structure
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 154 Back     information, alignment and structure
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 153 Back     information, alignment and structure
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Length = 153 Back     information, alignment and structure
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Length = 154 Back     information, alignment and structure
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Length = 170 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query677
d1jqia2231 Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus 100.0
d2d29a2233 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 100.0
d3mdea2231 Medium chain acyl-CoA dehydrogenase, NM domains {P 100.0
d1ivha2236 Isovaleryl-coa dehydrogenase, NM domains {Human (H 100.0
d1siqa2236 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 100.0
d1ukwa2227 Medium chain acyl-CoA dehydrogenase, NM domains {T 100.0
d1rx0a2231 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 100.0
d1r2ja2210 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 100.0
d1buca2232 Butyryl-CoA dehydrogenase, NM domains {Megasphaera 100.0
d2c12a2259 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 100.0
d2ddha3267 Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 { 99.97
d1w07a3271 Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale 99.96
d1siqa1154 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 99.94
d1jqia1153 Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus n 99.94
d1rx0a1153 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 99.93
d1ivha1151 Isovaleryl-CoA dehydrogenase, C-domain {Human (Hom 99.93
d3mdea1154 Medium chain acyl-CoA dehydrogenase, C-domain {Pig 99.93
d2d29a1153 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 99.93
d1r2ja1153 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 99.93
d2c12a1170 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 99.93
d1ukwa1152 Medium chain acyl-CoA dehydrogenase, C-domain {The 99.92
d1buca1151 Butyryl-CoA dehydrogenase, C-domain {Megasphaera e 99.92
d1w07a1189 Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale 99.9
d2ddha1183 Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 { 99.87
d1u8va2275 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains 99.83
d1u8va1215 4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal 95.77
d1r2ja1153 Protein FkbI {Streptomyces hygroscopicus [TaxId: 1 95.19
d1ivha1151 Isovaleryl-CoA dehydrogenase, C-domain {Human (Hom 92.44
d1siqa1154 Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapie 92.42
d1rx0a1153 Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) 91.58
d2c12a1170 Nitroalkane oxidase {Fusarium oxysporum [TaxId: 55 90.09
d1ukwa1152 Medium chain acyl-CoA dehydrogenase, C-domain {The 89.96
d3mdea1154 Medium chain acyl-CoA dehydrogenase, C-domain {Pig 88.88
d1jqia1153 Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus n 87.77
d1buca1151 Butyryl-CoA dehydrogenase, C-domain {Megasphaera e 86.22
d2d29a1153 Acyl-CoA dehydrogenase {Thermus thermophilus [TaxI 85.11
>d1jqia2 e.6.1.1 (A:4-234) Butyryl-CoA dehydrogenase, NM domains {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acyl-CoA dehydrogenase NM domain-like
superfamily: Acyl-CoA dehydrogenase NM domain-like
family: Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
domain: Butyryl-CoA dehydrogenase, NM domains
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=5.9e-43  Score=352.82  Aligned_cols=223  Identities=32%  Similarity=0.555  Sum_probs=206.8

Q ss_pred             CChhhHHHHHHHHHHHHHHHHhhCCC--cccCcCCCCCHHHHHHHHHcCCCCCCCcccCCCCCCCHHHHHHHHHHHhccC
Q psy2177          73 LTEDQSDTLKMLVDPVTKFFDEVNDP--LKNDSLETVEPNTLEGLWDLGAFSLQVPQDLGGLGLTNTQYARMVEIVGGND  150 (677)
Q Consensus        73 l~~e~~~~~~~l~~~~~~f~~~~~~p--~~~d~~~~~p~e~~~~l~~~Gl~~l~vP~eyGG~Gls~~~~~~v~e~la~~d  150 (677)
                      |||||    +++++.+++|+++++.|  .+.|+.+.+|.+.|+.|+++||+++.+|++|||.|++..+.+.+.|++++.+
T Consensus         7 L~ee~----~~l~~~~r~f~~~~i~p~a~~~d~~~~~p~e~~~~l~~~Gl~~~~~p~~~GG~g~~~~~~~~~~ee~~~~~   82 (231)
T d1jqia2           7 LPETH----QMLRQTCRDFAEKELVPIAAQLDKEHLFPTSQVKKMGELGLLAMDVPEELSGAGLDYLAYSIALEEISRGC   82 (231)
T ss_dssp             CCHHH----HHHHHHHHHHHHHHTTTTHHHHHHHTCCCHHHHHHHHHHTTTSSSSCGGGTCCCCCHHHHHHHHHHHHHHC
T ss_pred             CCHHH----HHHHHHHHHHHHHhChHHHHHHHhcCCCCHHHHHHHHHhCCcccccccccCCCchhHHHHHHHHHHHHhhc
Confidence            89888    68999999999998877  4677889999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHhhhhHHHHHHhcCChhhhhccccccccCCccccccccCCCCCCCCCCCceEEEEcCCCCEEEEEEEEEeec
Q psy2177         151 LAVGIVLGAHQSIGFKGILLVGNPEQKAKYLPRVSTGKEFAAFCLTEPASGSDAGSIKTRAVLSPDGKHYILNGSKIWIS  230 (677)
Q Consensus       151 ~s~~~~l~~h~~~g~~~i~~~Gt~eqk~~yLp~l~~Ge~~~a~alTEp~~GSD~~~~~T~A~~~~dG~~y~LnG~K~~is  230 (677)
                      .+.+.....|.+.....|..+|+++||++|||++++|++++|+++|||++|||+..++|+|++  +|++|+|||+|+|||
T Consensus        83 ~~~~~~~~~~~~~~~~~l~~~g~~~qk~~~l~~~~~g~~~~~~a~tEp~~gsd~~~~~t~a~~--~~~~~~lnG~K~~vt  160 (231)
T d1jqia2          83 ASTGVIMSVNNSLYLGPILKFGSSQQKQQWITPFTNGDKIGCFALSEPGNGSDAGAASTTARE--EGDSWVLNGTKAWIT  160 (231)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHCCHHHHHHHTGGGSSSSCCEEEECCBTTBSSSTTCCCCEEEE--CSSEEEEEEEEEEEE
T ss_pred             cccccceeeeccchhhhhhhcCCHHHHHHHhCcccCCCccccceeccCCCCccCcccceEEEE--ECCEEEEeeeeeeEe
Confidence            888888888877777889999999999999999999999999999999999999999999999  455699999999999


Q ss_pred             CccccCEEEEEEEcCCCCCCCCcccCeEEEEEEecCCCCeeeCCCCCcCCCCCCCceEEEEcceecccccccCCCc
Q psy2177         231 NGGFAEIMTVFAQTPVKDEKTGKVVDKVTAFIVERSFGGVTSGPPEKKMGIKASNTAEVYYEDVKVPVENVLGGVG  306 (677)
Q Consensus       231 na~~Ad~~lV~Art~~~d~~~g~~~~gis~FlVp~~~~GV~v~~~~~~~G~rg~~t~~v~fddV~VP~~~lLG~~g  306 (677)
                      |+..||+++|+|+++..     ...+|+++|+||++.|||++.+.|+++|+|++++++|+||||+||++++||++|
T Consensus       161 ~~~~a~~~~v~a~~~~~-----~~~~g~~~~~Vp~~~~Gv~i~~~~~~~G~r~~~~~~v~fd~v~Vp~~~~lG~~G  231 (231)
T d1jqia2         161 NSWEASATVVFASTDRS-----RQNKGISAFLVPMPTPGLTLGKKEDKLGIRASSTANLIFEDCRIPKENLLGEPG  231 (231)
T ss_dssp             TTTTCSEEEEEEESCGG-----GGGGSEEEEEEESSCTTEEECCCCCBSSCTTSCEEEEEEEEEEEEGGGEESSTT
T ss_pred             ecccccccccccccccc-----cccCCceEEEEeCCCCCeEECCccCccccCCCceEEEEEeeEEEcHHHCCCCCC
Confidence            99999999999998532     123689999999999999999999999999999999999999999999999886
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d3mdea2 e.6.1.1 (A:11-241) Medium chain acyl-CoA dehydrogenase, NM domains {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1ivha2 e.6.1.1 (A:6-241) Isovaleryl-coa dehydrogenase, NM domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1siqa2 e.6.1.1 (A:3-238) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ukwa2 e.6.1.1 (A:32-258) Medium chain acyl-CoA dehydrogenase, NM domains {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1rx0a2 e.6.1.1 (A:10-240) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r2ja2 e.6.1.1 (A:3-212) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d1buca2 e.6.1.1 (A:1-232) Butyryl-CoA dehydrogenase, NM domains {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d2c12a2 e.6.1.1 (A:2-260) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d2ddha3 e.6.1.2 (A:1-267) Peroxisomal acyl-CoA oxidase-II, domains 1 and 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1w07a3 e.6.1.2 (A:2-272) Acyl-coenzyme A oxidase 1, domains 1 and 2 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d1w07a1 a.29.3.2 (A:273-461) Acyl-coenzyme A oxidase 1, domains 3 and 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ddha1 a.29.3.2 (A:278-460) Peroxisomal acyl-CoA oxidase-II, domains 3 and 4 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1u8va2 e.6.1.1 (A:1-275) 4-hydroxybutyryl-CoA dehydratase AbfD, NM domains {Clostridium aminobutyricum [TaxId: 33953]} Back     information, alignment and structure
>d1u8va1 a.29.3.1 (A:276-490) 4-hydroxybutyryl-CoA dehydratase AbfD, C-terminal domain {Clostridium aminobutyricum [TaxId: 33953]} Back     information, alignment and structure
>d1r2ja1 a.29.3.1 (A:213-365) Protein FkbI {Streptomyces hygroscopicus [TaxId: 1912]} Back     information, alignment and structure
>d1ivha1 a.29.3.1 (A:242-392) Isovaleryl-CoA dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rx0a1 a.29.3.1 (A:241-393) Isobutyryl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c12a1 a.29.3.1 (A:261-430) Nitroalkane oxidase {Fusarium oxysporum [TaxId: 5507]} Back     information, alignment and structure
>d1ukwa1 a.29.3.1 (A:259-410) Medium chain acyl-CoA dehydrogenase, C-domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase, C-domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1jqia1 a.29.3.1 (A:235-387) Butyryl-CoA dehydrogenase, C-domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1buca1 a.29.3.1 (A:233-383) Butyryl-CoA dehydrogenase, C-domain {Megasphaera elsdenii [TaxId: 907]} Back     information, alignment and structure
>d2d29a1 a.29.3.1 (A:235-387) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure