Psyllid ID: psy2200

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------25
Protein Sequence
MATTSSGSKQTPPNRDEGSGDQKKTDGGNDKSQIYDCNICFDTAKDAVISMCGHLFWLKFFYWPGRGGSEIDPRDEVPPRPQGQRTERENSSVQSKVSNMATTSSGSKQTPPNRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPENSSSCYLLETVFHFCVQFCTSGVAICAIWGALV
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHHccHHHHHHHHcccccccEEcccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccEEEEEEHccccccEEEcccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEHccccccEEEcccccccHHHHHHHHHccccccccccEEEEEccccEEEEEcccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHHHHHcc
Coil and Loop (DISEMBL)
mattssgskqtppnrdegsgdqkktdggndksqiydcnicfdTAKDAVISMCGHLFWlkffywpgrggseidprdevpprpqgqrterenssvqskvsnmattssgskqtppnrdegsgdqkktdgendkgqiydcniclDTAKDAVISMCghlfcwpclhqwletcpnrqtcpvckaaidkdkvipvygrggssktdprdkvpprpqgqrtepenssscyLLETVFHFCVQFCTSGVAICAIWGALV
Flexible Loop (DISEMBL)
mattssgskqtppnrdegsgdqkktdggndksqiYDCNICFDTAKDAVISMCGHLFWLKFFYWPGRGGseidprdevpprpqgqrterenssvqskvsnmattssgskqtppnrdegsgdqkktdgendkgqiYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCkaaidkdkvipvygrggssktdprdkvpprpqgqrtepenSSSCYLLETVFHFCVQFCTSGVAICAIWGALV
Low Complexity Region (SEG)
MATTSSGSKQTPPNRDEGSGDQKKTDGGNDKSQIYDCNICFDTAKDAVISMCGHLFWLKFFYWPGRGGSEIDPRDEVPPRPQGQRTERENSSVQSKVSNMATTSSGSKQTPPNRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPENSSSCYLLETVFHFCVQFCTSGVAICAIWGALV
Disordered region (IsUnstruct)
********************************QIYDCNICFDTAKDAVISMCGHLFWLKFFYWPG******************************************************************QIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYG*****************************CYLLETVFHFCVQFCTSGVAICAIWGAL*
Disordered Region (DISOPRED)
*************************************NICFDTAKDAVISMCGHLFWLKFFYWPGRGGSEI*************RTERENSSVQSKVSNMATTSSGSKQTPPNRD****************QIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV*****************************************FHFCVQFCTSGVAICAIWGALV
Disordered Region (DISEMBL)
*****************************DKSQIYDCNICFDTAKDAVISMCGHLFWLKFFYWPGRGGSEIDP******************************************************NDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYG***************************SSCYLLETVFHFCVQFCTSGVAICAIWGALV
Disordered Region (DISPRO)
*******************************SQIYDCNICFDTAKDAVISMCGHLFWLKFFYWPGRG***************************************************************GQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRG*****************************LLETVFHFCVQFCTSGVAICAIWGALV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATTSSGSKQTPPNRDEGSGDQKKTDGGNDKSQIYDCNICFDTAKDAVISMCGHLFWLKFFYWPGRGGSEIDPRDEVPPRPQGQRTERENSSVQSKVSNMATTSSGSKQTPPNRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPENSSSCYLLETVFHFCVQFCTSGVAICAIWGALV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	248	2.2.26 [Sep-21-2011]
Q91YT2	192	E3 ubiquitin-protein liga	yes	N/A	0.471	0.609	0.613	3e-38
Q5ZIR9	194	E3 ubiquitin-protein liga	yes	N/A	0.379	0.484	0.7	3e-37
Q568Y3	192	E3 ubiquitin-protein liga	yes	N/A	0.217	0.281	0.795	4e-37
Q96GF1	192	E3 ubiquitin-protein liga	yes	N/A	0.217	0.281	0.795	4e-37
Q5RFK9	192	E3 ubiquitin-protein liga	yes	N/A	0.217	0.281	0.795	6e-37
Q6PC78	194	E3 ubiquitin-protein liga	yes	N/A	0.225	0.288	0.783	2e-36
Q09463	235	RING finger protein 5 OS=	yes	N/A	0.379	0.4	0.642	1e-33
Q99942	180	E3 ubiquitin-protein liga	no	N/A	0.463	0.638	0.529	2e-32
Q5M807	180	E3 ubiquitin-protein liga	no	N/A	0.431	0.594	0.525	5e-32
O35445	180	E3 ubiquitin-protein liga	no	N/A	0.431	0.594	0.525	5e-32

>sp|Q91YT2|RN185_MOUSE E3 ubiquitin-protein ligase RNF185 OS=Mus musculus GN=Rnf185 PE=2 SV=1

 Score =  158 bits (400), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 73/119 (61%), Positives = 86/119 (72%), Gaps = 2/119 (1%)

Query: 100 MATTSSGSKQTPPNRDEG--SGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCW 157
           MA+    +  +  N + G  SG    T     +   ++CNICLDTAKDAVIS+CGHLFCW
Sbjct: 1   MASKGPSASASTENSNAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCW 60

Query: 158 PCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPEN 216
           PCLHQWLET PNRQ CPVCKA I +DKVIP+YGRG + + DPR+K PPRPQGQR EPEN
Sbjct: 61  PCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPEN 119

Mitochondrial E3 ubiquitin-protein ligase that regulates selective mitochondrial autophagy by mediating 'Lys-63'-linked polyubiquitination of BNIP1.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q5ZIR9|RN185_CHICK E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185 PE=2 SV=1

 Score =  155 bits (391), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 70/100 (70%), Positives = 79/100 (79%), Gaps = 6/100 (6%)

Query: 117 GSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVC 176
           G+GD    D        ++CNICLDTAKDAVIS+CGHLFCWPCLHQWLET PNRQ CPVC
Sbjct: 28  GAGDNTNQD------NTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVC 81

Query: 177 KAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPEN 216
           KA I +DKVIP+YGRG + + DPR+K PPRPQGQR EPEN
Sbjct: 82  KAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPEN 121

Mitochondrial E3 ubiquitin-protein ligase that regulates selective mitochondrial autophagy by mediating 'Lys-63'-linked polyubiquitination.

Gallus gallus (taxid: 9031)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q568Y3|RN185_RAT E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185 PE=2 SV=1

 Score =  155 bits (391), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 66/83 (79%), Positives = 74/83 (89%)

Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGG 193
           ++CNICLDTAKDAVIS+CGHLFCWPCLHQWLET PNRQ CPVCKA I +DKVIP+YGRG 
Sbjct: 37  FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGS 96

Query: 194 SSKTDPRDKVPPRPQGQRTEPEN 216
           + + DPR+K PPRPQGQR EPEN
Sbjct: 97  TGQQDPREKTPPRPQGQRPEPEN 119

Mitochondrial E3 ubiquitin-protein ligase that regulates selective mitochondrial autophagy by mediating 'Lys-63'-linked polyubiquitination of BNIP1.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q96GF1|RN185_HUMAN E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1 SV=1

 Score =  154 bits (390), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 66/83 (79%), Positives = 74/83 (89%)

Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGG 193
           ++CNICLDTAKDAVIS+CGHLFCWPCLHQWLET PNRQ CPVCKA I +DKVIP+YGRG 
Sbjct: 37  FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGS 96

Query: 194 SSKTDPRDKVPPRPQGQRTEPEN 216
           + + DPR+K PPRPQGQR EPEN
Sbjct: 97  TGQQDPREKTPPRPQGQRPEPEN 119

Mitochondrial E3 ubiquitin-protein ligase that regulates selective mitochondrial autophagy by mediating 'Lys-63'-linked polyubiquitination of BNIP1.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5RFK9|RN185_PONAB E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2 SV=1

 Score =  154 bits (389), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 66/83 (79%), Positives = 74/83 (89%)

Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGG 193
           ++CNICLDTAKDAVIS+CGHLFCWPCLHQWLET PNRQ CPVCKA I +DKVIP+YGRG 
Sbjct: 37  FECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGS 96

Query: 194 SSKTDPRDKVPPRPQGQRTEPEN 216
           + + DPR+K PPRPQGQR EPEN
Sbjct: 97  TGQQDPREKTPPRPQGQRPEPEN 119

Mitochondrial E3 ubiquitin-protein ligase that regulates selective mitochondrial autophagy by mediating 'Lys-63'-linked polyubiquitination of BNIP1.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6PC78|RN185_DANRE E3 ubiquitin-protein ligase RNF185 OS=Danio rerio GN=rnf185 PE=2 SV=1

 Score =  152 bits (384), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 65/83 (78%), Positives = 74/83 (89%)

Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGG 193
           ++CNICLDT+KDAVIS+CGHLFCWPCLHQWLET PNRQ CPVCKA I +DKVIP+YGRG 
Sbjct: 39  FECNICLDTSKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGS 98

Query: 194 SSKTDPRDKVPPRPQGQRTEPEN 216
           + + DPR+K PPRPQGQR EPEN
Sbjct: 99  TGQQDPREKTPPRPQGQRPEPEN 121

Mitochondrial E3 ubiquitin-protein ligase that regulates selective mitochondrial autophagy by mediating 'Lys-63'-linked polyubiquitination.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q09463|RNF5_CAEEL RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1

 Score =  143 bits (360), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 61/95 (64%), Positives = 77/95 (81%), Gaps = 1/95 (1%)

Query: 120 DQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAA 179
           ++  +    D+   ++CNICLD AKDAV+S+CGHLFCWPCL QWL+T PN Q CPVCK+A
Sbjct: 10  EEPTSSSNKDESARFECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCPVCKSA 69

Query: 180 IDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEP 214
           ID +KV+P+YGRGG S +DPR KVPPRP+GQR+EP
Sbjct: 70  IDGNKVVPIYGRGGDS-SDPRKKVPPRPKGQRSEP 103

Caenorhabditis elegans (taxid: 6239)

>sp|Q99942|RNF5_HUMAN E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1

 Score =  139 bits (350), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 62/117 (52%), Positives = 77/117 (65%), Gaps = 2/117 (1%)

Query: 115 DEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCP 174
           +E  G +         G  ++CNICL+TA++AV+S+CGHL+CWPCLHQWLET P RQ CP
Sbjct: 6   EEDGGPEGPNRERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQECP 65

Query: 175 VCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPENSSSCYLLETV--FHF 229
           VCKA I ++KV+P+YGRG     DPR K PPRPQGQR  PE+            FHF
Sbjct: 66  VCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDTGGFHF 122

Has E2-dependent E3 ubiquitin-protein ligase activity. May function together with E2 ubiquitin-conjugating enzymes UBE2D1/UBCH5A and UBE2D2/UBC4. Mediates ubiquitination of PXN/paxillin and Salmonella type III secreted protein sopA. May be involved in regulation of cell motility and localization of PXN/paxillin. Mediates the 'Lys-63'-linked polyubiquitination of JKAMP thereby regulating JKAMP function by decreasing its association with components of the proteasome and ERAD; the ubiquitination appears to involve E2 ubiquitin-conjugating enzyme UBE2N. Mediates the 'Lys-48'-linked polyubiquitination of TMEM173 at 'Lys-150' leading to its proteasomal degradation; the ubiquitination occurrs in mitochondria after viral transfection and regulates antiviral responses.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5M807|RNF5_RAT E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2 SV=1

 Score =  137 bits (346), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 63/120 (52%), Positives = 78/120 (65%), Gaps = 13/120 (10%)

Query: 112 PNRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQ 171
           PNR+ G                ++CNICL+TA++AV+S+CGHL+CWPCLHQWLET P+RQ
Sbjct: 14  PNRERGGASA-----------TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQ 62

Query: 172 TCPVCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPENSSSCYLLETV--FHF 229
            CPVCKA I ++KV+P+YGRG     DPR K PPRPQGQR  PE+            FHF
Sbjct: 63  ECPVCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDAGGFHF 122

Has E2-dependent E3 ubiquitin-protein ligase activity. May function together with E2 ubiquitin-conjugating enzymes UBE2D1/UBCH5A and UBE2D2/UBC4. Mediates ubiquitination of PXN/paxillin. May be involved in regulation of cell motility and localization of PXN/paxillin. Mediates the 'Lys-63'-linked polyubiquitination of JKAMP thereby regulating JKAMP function by decreasing its association with components of the proteasome and ERAD; the ubiquitination appears to involve E2 ubiquitin-conjugating enzyme UBE2N. Mediates the 'Lys-48'-linked polyubiquitination of TMEM173 at 'Lys-150' leading to its proteasomal degradation; the ubiquitination occurrs in mitochondria after viral transfection and regulates antiviral responses.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O35445|RNF5_MOUSE E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1

 Score =  137 bits (346), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 63/120 (52%), Positives = 78/120 (65%), Gaps = 13/120 (10%)

Query: 112 PNRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQ 171
           PNR+ G                ++CNICL+TA++AV+S+CGHL+CWPCLHQWLET P+RQ
Sbjct: 14  PNRERGGASA-----------TFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQ 62

Query: 172 TCPVCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPENSSSCYLLETV--FHF 229
            CPVCKA I ++KV+P+YGRG     DPR K PPRPQGQR  PE+            FHF
Sbjct: 63  ECPVCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQGQRPAPESRGGFQPFGDAGGFHF 122

Has E2-dependent E3 ubiquitin-protein ligase activity. May function together with E2 ubiquitin-conjugating enzymes UBE2D1/UBCH5A and UBE2D2/UBC4. Mediates ubiquitination of PXN/paxillin. May be involved in regulation of cell motility and localization of PXN/paxillin. Mediates the 'Lys-63'-linked polyubiquitination of JKAMP thereby regulating JKAMP function by decreasing its association with components of the proteasome and ERAD; the ubiquitination appears to involve E2 ubiquitin-conjugating enzyme UBE2N. Mediates the 'Lys-48'-linked polyubiquitination of TMEM173 at 'Lys-150 'leading to its proteasomal degradation; the ubiquitination occurrs in mitochondria after viral transfection and regulates antiviral responses.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
405960320	1362	hypothetical protein CGI_10024104 [Crass	0.415	0.075	0.716	4e-43
321454594	188	hypothetical protein DAPPUDRAFT_65278 [D	0.475	0.627	0.625	4e-40
83595295	262	transcription regulator [Glossina morsit	0.411	0.389	0.699	3e-38
195394263	272	GJ18601 [Drosophila virilis] gi|19415027	0.451	0.411	0.652	3e-38
194894214	277	GG19371 [Drosophila erecta] gi|190649679	0.548	0.490	0.513	2e-37
91090264	190	PREDICTED: similar to ring finger protei	0.455	0.594	0.627	2e-37
383852264	182	PREDICTED: E3 ubiquitin-protein ligase R	0.443	0.604	0.657	2e-37
225718068	182	RING finger protein 185 [Caligus clemens	0.310	0.423	0.628	2e-37
198476916	242	GA28677 [Drosophila pseudoobscura pseudo	0.447	0.458	0.647	3e-37
324510867	196	RING finger protein 185 [Ascaris suum] g	0.459	0.581	0.629	3e-37

>gi|405960320|gb|EKC26251.1| hypothetical protein CGI_10024104 [Crassostrea gigas]

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 76/106 (71%), Positives = 89/106 (83%), Gaps = 3/106 (2%)

Query: 113 NRDEGSGDQKKTDGENDKGQ-IYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQ 171
           ++D G G    T G  + G+  ++CNICLDTAKDAV+SMCGHLFCWPCLHQWLET PNRQ
Sbjct: 7   SQDNGPGG--ATGGPEEDGRAFFECNICLDTAKDAVVSMCGHLFCWPCLHQWLETRPNRQ 64

Query: 172 TCPVCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPENS 217
           TCPVCKA I KDKVIP+YGRG S +TDPR+K+PPRPQGQR+EPEN+
Sbjct: 65  TCPVCKAGISKDKVIPIYGRGASEQTDPREKLPPRPQGQRSEPENN 110

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|321454594|gb|EFX65759.1| hypothetical protein DAPPUDRAFT_65278 [Daphnia pulex]

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 80/128 (62%), Positives = 98/128 (76%), Gaps = 10/128 (7%)

Query: 92  SVQSKVSNMATTSSGSKQTPPNRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMC 151
           +V  +    A  S+G + T   R+E  G++++          ++CNICLDTAKDAVISMC
Sbjct: 2   AVDEEPDTTAKNSAGGENTENKRNESRGEEERA---------FECNICLDTAKDAVISMC 52

Query: 152 GHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQR 211
           GHLFCWPCLHQWLET PNRQ+CPVCKAAI +DKVIP+YGRGG SK DPR+K+PPRPQGQR
Sbjct: 53  GHLFCWPCLHQWLETRPNRQSCPVCKAAISRDKVIPLYGRGG-SKEDPREKLPPRPQGQR 111

Query: 212 TEPENSSS 219
           TEPEN+ +
Sbjct: 112 TEPENTGA 119

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|83595295|gb|ABC25099.1| transcription regulator [Glossina morsitans morsitans] gi|289739513|gb|ADD18504.1| putative E3 ubiquitin ligase [Glossina morsitans morsitans]

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 72/103 (69%), Positives = 85/103 (82%), Gaps = 1/103 (0%)

Query: 113 NRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQT 172
           N    +GD K+ + +ND   +++CNICLDTAKDAV+SMCGHLFCWPCLHQWLET PNR+ 
Sbjct: 88  NTKTAAGDNKREEDKNDD-SLFECNICLDTAKDAVVSMCGHLFCWPCLHQWLETRPNRKL 146

Query: 173 CPVCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPE 215
           CPVCKAAI KDKVIP+YGR  + + DPR+KVPPRP GQRTEPE
Sbjct: 147 CPVCKAAIGKDKVIPLYGRNSTKQEDPRNKVPPRPAGQRTEPE 189

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195394263|ref|XP_002055765.1| GJ18601 [Drosophila virilis] gi|194150275|gb|EDW65966.1| GJ18601 [Drosophila virilis]

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 75/115 (65%), Positives = 88/115 (76%), Gaps = 3/115 (2%)

Query: 101 ATTSSGSKQTPPNRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCL 160
           A  ++ S  T P  + GS D+ K   E     +Y+CNICLDTAKDAV+SMCGHLFCWPCL
Sbjct: 91  AAEATSSSATGPANEAGSNDKDKEPSEE---SLYECNICLDTAKDAVVSMCGHLFCWPCL 147

Query: 161 HQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPE 215
           HQWL T PNR+ CPVCKAA+DKDKVIP+YGR  + + DPR+KVPPRP GQRTEPE
Sbjct: 148 HQWLLTRPNRKLCPVCKAAVDKDKVIPLYGRNSTRQEDPRNKVPPRPAGQRTEPE 202

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194894214|ref|XP_001978030.1| GG19371 [Drosophila erecta] gi|190649679|gb|EDV46957.1| GG19371 [Drosophila erecta]

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/150 (51%), Positives = 102/150 (68%), Gaps = 14/150 (9%)

Query: 80  RPQGQRTERENSSVQSKVSNMATTSSGSKQTPPNRDEGSG---------DQKKTDGENDK 130
           RP G     ++++ ++  SN + + +G   +  N+ +  G         D K  + + +K
Sbjct: 55  RPLGTSIPTDSAASEANTSNTSYSFTGDYLSGGNKADLKGGYPSAGTESDSKSNEKDKEK 114

Query: 131 GQ-----IYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV 185
            Q     +Y+CNICLDTAKDAV+SMCGHL+CWPCLHQWL T PNR+ CPVCKAA+DKDKV
Sbjct: 115 EQTSDESLYECNICLDTAKDAVVSMCGHLYCWPCLHQWLLTRPNRKLCPVCKAAVDKDKV 174

Query: 186 IPVYGRGGSSKTDPRDKVPPRPQGQRTEPE 215
           IP+YGR  + K DPR+KVPPRP GQRTEP+
Sbjct: 175 IPLYGRNSTQKEDPRNKVPPRPSGQRTEPD 204

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91090264|ref|XP_970269.1| PREDICTED: similar to ring finger protein 5 [Tribolium castaneum] gi|270013784|gb|EFA10232.1| hypothetical protein TcasGA2_TC012429 [Tribolium castaneum]

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/118 (62%), Positives = 89/118 (75%), Gaps = 5/118 (4%)

Query: 98  SNMATTSSGSKQTPPNRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCW 157
           SN    +  S + P     G+ D+ K D      ++++CNICLDTA+DAV+SMCGHLFCW
Sbjct: 3   SNTTENAKHSAEHPDGDGAGATDEDKKDD-----RMFECNICLDTARDAVVSMCGHLFCW 57

Query: 158 PCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPE 215
           PCLHQWLET PNRQ CPVCKAAI K+KVIP+YGRG + + DPR+KVPPRP GQRTEPE
Sbjct: 58  PCLHQWLETRPNRQVCPVCKAAISKEKVIPLYGRGSTKQEDPREKVPPRPAGQRTEPE 115

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852264|ref|XP_003701648.1| PREDICTED: E3 ubiquitin-protein ligase RNF185-like [Megachile rotundata]

 Score =  161 bits (408), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/114 (65%), Positives = 90/114 (78%), Gaps = 4/114 (3%)

Query: 104 SSGSKQTPPNRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQW 163
           S+  +Q  P++   S  ++K   E D  + ++CNICLDTAKDAVISMCGHLFCWPCLHQW
Sbjct: 2   STAREQAGPSKQSDSATEEK---EKDN-RTFECNICLDTAKDAVISMCGHLFCWPCLHQW 57

Query: 164 LETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPENS 217
           LET P +QTCPVCKAAI KDKVIP+YGRG + + DPR+ VPPRP GQRTEPEN+
Sbjct: 58  LETRPMKQTCPVCKAAISKDKVIPLYGRGATRQEDPRNNVPPRPAGQRTEPENN 111

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225718068|gb|ACO14880.1| RING finger protein 185 [Caligus clemensi]

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 66/105 (62%), Positives = 85/105 (80%)

Query: 115 DEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCP 174
           D  +  +    G N+   +++CNICLDTA+DAVIS+CGHLFCWPCLHQWLET PNRQ CP
Sbjct: 5   DAQASQESAGGGSNEDNSLFECNICLDTARDAVISLCGHLFCWPCLHQWLETTPNRQMCP 64

Query: 175 VCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPENSSS 219
           VCKA I ++KV+PVYGRG + K DPR+K+PPRP+GQR+EPE +++
Sbjct: 65  VCKAGISREKVVPVYGRGNTDKKDPREKIPPRPRGQRSEPETANA 109

Source: Caligus clemensi

Species: Caligus clemensi

Genus: Caligus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198476916|ref|XP_002136852.1| GA28677 [Drosophila pseudoobscura pseudoobscura] gi|198145179|gb|EDY71883.1| GA28677 [Drosophila pseudoobscura pseudoobscura]

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 77/119 (64%), Positives = 90/119 (75%), Gaps = 8/119 (6%)

Query: 105 SGSKQTPPNRDEG--SGDQKKTDGE--NDKGQ----IYDCNICLDTAKDAVISMCGHLFC 156
           SG+ Q+ P   E   S D+K T G   NDK      +Y+CNICLDTAKDAV+SMCGHLFC
Sbjct: 89  SGTAQSVPTDSEPGLSADKKDTTGNSSNDKEHSDESLYECNICLDTAKDAVVSMCGHLFC 148

Query: 157 WPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPE 215
           WPCLHQWL T P+R+ CPVCKAA+DKDKVIP+YGR  + + DPR+KVPPRP G RTEPE
Sbjct: 149 WPCLHQWLLTRPSRKLCPVCKAAVDKDKVIPLYGRNSTRQEDPRNKVPPRPAGHRTEPE 207

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|324510867|gb|ADY44540.1| RING finger protein 185 [Ascaris suum] gi|324513476|gb|ADY45537.1| RING finger protein 185 [Ascaris suum]

 Score =  161 bits (407), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/116 (62%), Positives = 93/116 (80%), Gaps = 2/116 (1%)

Query: 102 TTSSGSKQTPPNRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLH 161
            +SSG      N  +G+    ++  + D+G  ++CNICLDTA+DAV+SMCGHLFCWPCLH
Sbjct: 2   ASSSGVSSQATNDSQGTSHSDRSKKKEDEGARFECNICLDTARDAVVSMCGHLFCWPCLH 61

Query: 162 QWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTE-PEN 216
           QWL+T PNRQ CPVCK+AI KDKVIP+YGRGG +++DPR+KVPPRP+GQRTE P+N
Sbjct: 62  QWLDTRPNRQLCPVCKSAISKDKVIPLYGRGG-TESDPREKVPPRPRGQRTEAPQN 116

Source: Ascaris suum

Species: Ascaris suum

Genus: Ascaris

Family: Ascarididae

Order: Ascaridida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	248
UNIPROTKB|Q5ZIR9	194	RNF185 "E3 ubiquitin-protein l	0.463	0.592	0.626	6.8e-40
UNIPROTKB|F1PCX5	192	RNF185 "Uncharacterized protei	0.467	0.604	0.616	1.4e-39
UNIPROTKB|Q96GF1	192	RNF185 "E3 ubiquitin-protein l	0.467	0.604	0.616	1.4e-39
UNIPROTKB|F2Z4Y3	192	RNF185 "Uncharacterized protei	0.467	0.604	0.616	1.4e-39
MGI|MGI:1922078	192	Rnf185 "ring finger protein 18	0.471	0.609	0.613	4.8e-39
RGD|1564777	192	Rnf185 "ring finger protein 18	0.471	0.609	0.613	6.1e-39
UNIPROTKB|A4IFC2	192	RNF185 "RNF185 protein" [Bos t	0.467	0.604	0.608	6.1e-39
ZFIN|ZDB-GENE-040426-1977	194	rnf185 "ring finger protein 18	0.483	0.618	0.578	2.6e-38
FB|FBgn0052581	283	CG32581 [Drosophila melanogast	0.548	0.480	0.513	1.5e-37
FB|FBgn0030693	277	CG8974 [Drosophila melanogaste	0.548	0.490	0.513	1.5e-37

UNIPROTKB|Q5ZIR9 RNF185 "E3 ubiquitin-protein ligase RNF185" [Gallus gallus (taxid:9031)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 72/115 (62%), Positives = 85/115 (73%)

Query:   102 TTSSGSKQTPPNRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLH 161
             TTS+ +K +      GS          ++   ++CNICLDTAKDAVIS+CGHLFCWPCLH
Sbjct:     7 TTSASTKSSSTGGTSGSSSSNGAGDNTNQDNTFECNICLDTAKDAVISLCGHLFCWPCLH 66

Query:   162 QWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPEN 216
             QWLET PNRQ CPVCKA I +DKVIP+YGRG + + DPR+K PPRPQGQR EPEN
Sbjct:    67 QWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPEN 121

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

UNIPROTKB|F1PCX5 RNF185 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 74/120 (61%), Positives = 88/120 (73%)

Query:   100 MATTSSGSKQTPPNRDEGSGDQKKTDGENDKG---QIYDCNICLDTAKDAVISMCGHLFC 156
             MA+    +  +P N   G G    ++G  + G     ++CNICLDTAKDAVIS+CGHLFC
Sbjct:     1 MASKGPSASASPENSSAG-GPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFC 59

Query:   157 WPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPEN 216
             WPCLHQWLET PNRQ CPVCKA I +DKVIP+YGRG + + DPR+K PPRPQGQR EPEN
Sbjct:    60 WPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPEN 119

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q96GF1 RNF185 "E3 ubiquitin-protein ligase RNF185" [Homo sapiens (taxid:9606)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 74/120 (61%), Positives = 88/120 (73%)

Query:   100 MATTSSGSKQTPPNRDEGSGDQKKTDGENDKG---QIYDCNICLDTAKDAVISMCGHLFC 156
             MA+    +  +P N   G G    ++G  + G     ++CNICLDTAKDAVIS+CGHLFC
Sbjct:     1 MASKGPSASASPENSSAG-GPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFC 59

Query:   157 WPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPEN 216
             WPCLHQWLET PNRQ CPVCKA I +DKVIP+YGRG + + DPR+K PPRPQGQR EPEN
Sbjct:    60 WPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPEN 119

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

UNIPROTKB|F2Z4Y3 RNF185 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 74/120 (61%), Positives = 88/120 (73%)

Query:   100 MATTSSGSKQTPPNRDEGSGDQKKTDGENDKG---QIYDCNICLDTAKDAVISMCGHLFC 156
             MA+    +  +P N   G G    ++G  + G     ++CNICLDTAKDAVIS+CGHLFC
Sbjct:     1 MASKGPSASASPENSSAG-GPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFC 59

Query:   157 WPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPEN 216
             WPCLHQWLET PNRQ CPVCKA I +DKVIP+YGRG + + DPR+K PPRPQGQR EPEN
Sbjct:    60 WPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPEN 119

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:1922078 Rnf185 "ring finger protein 185" [Mus musculus (taxid:10090)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 73/119 (61%), Positives = 86/119 (72%)

Query:   100 MATTSSGSKQTPPNRDEG--SGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCW 157
             MA+    +  +  N + G  SG    T     +   ++CNICLDTAKDAVIS+CGHLFCW
Sbjct:     1 MASKGPSASASTENSNAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCW 60

Query:   158 PCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPEN 216
             PCLHQWLET PNRQ CPVCKA I +DKVIP+YGRG + + DPR+K PPRPQGQR EPEN
Sbjct:    61 PCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPEN 119

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1564777 Rnf185 "ring finger protein 185" [Rattus norvegicus (taxid:10116)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 73/119 (61%), Positives = 85/119 (71%)

Query:   100 MATTSSGSKQTPPNRDEG--SGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCW 157
             MA+    +  +  N   G  SG    T     +   ++CNICLDTAKDAVIS+CGHLFCW
Sbjct:     1 MASKGPSASASTENSSAGGPSGSSNGTGESGGQDSTFECNICLDTAKDAVISLCGHLFCW 60

Query:   158 PCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPEN 216
             PCLHQWLET PNRQ CPVCKA I +DKVIP+YGRG + + DPR+K PPRPQGQR EPEN
Sbjct:    61 PCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPEN 119

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

UNIPROTKB|A4IFC2 RNF185 "RNF185 protein" [Bos taurus (taxid:9913)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 73/120 (60%), Positives = 88/120 (73%)

Query:   100 MATTSSGSKQTPPNRDEGSGDQKKTDGENDKG---QIYDCNICLDTAKDAVISMCGHLFC 156
             MA+    +  +P +   G G    ++G  + G     ++CNICLDTAKDAVIS+CGHLFC
Sbjct:     1 MASKGPSAPASPDSSSAG-GPSGSSNGAGESGGQDSTFECNICLDTAKDAVISLCGHLFC 59

Query:   157 WPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPEN 216
             WPCLHQWLET PNRQ CPVCKA I +DKVIP+YGRG + + DPR+K PPRPQGQR EPEN
Sbjct:    60 WPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPEN 119

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1977 rnf185 "ring finger protein 185" [Danio rerio (taxid:7955)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 70/121 (57%), Positives = 89/121 (73%)

Query:    97 VSNMATTSSGSKQTPPNRDEGSGDQK-KTDGENDKGQIYDCNICLDTAKDAVISMCGHLF 155
             +++ A + S S  +  +    +G    ++ G   +   ++CNICLDT+KDAVIS+CGHLF
Sbjct:     1 MASAAASESSSSSSSSSAGAANGQSAGESGGGGAQDSTFECNICLDTSKDAVISLCGHLF 60

Query:   156 CWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQGQRTEPE 215
             CWPCLHQWLET PNRQ CPVCKA I +DKVIP+YGRG + + DPR+K PPRPQGQR EPE
Sbjct:    61 CWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGRGSTGQQDPREKTPPRPQGQRPEPE 120

Query:   216 N 216
             N
Sbjct:   121 N 121

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006914 "autophagy" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0052581 CG32581 [Drosophila melanogaster (taxid:7227)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 77/150 (51%), Positives = 100/150 (66%)

Query:    80 RPQGQRTERENSSVQSKVSNMATTSSGSKQTPPNRDEGSG---------DQKKTDGENDK 130
             RP G      +++ + K SN + + +G   +  N+ +  G         D K  + + +K
Sbjct:    55 RPLGTSIPTNSTASELKKSNTSYSFTGDYLSGGNKADLKGGYPFGGTDTDTKANEKDKEK 114

Query:   131 -----GQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV 185
                    +Y+CNICLDTAKDAV+SMCGHLFCWPCLHQWL T PNR+ CPVCKAA+DKDKV
Sbjct:   115 EHTADDSLYECNICLDTAKDAVVSMCGHLFCWPCLHQWLLTRPNRKLCPVCKAAVDKDKV 174

Query:   186 IPVYGRGGSSKTDPRDKVPPRPQGQRTEPE 215
             IP+YGR  + + DPR+KVPPRP GQRTEP+
Sbjct:   175 IPLYGRNSTHQEDPRNKVPPRPAGQRTEPD 204

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0030693 CG8974 [Drosophila melanogaster (taxid:7227)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 77/150 (51%), Positives = 100/150 (66%)

Query:    80 RPQGQRTERENSSVQSKVSNMATTSSGSKQTPPNRDEGSG---------DQKKTDGENDK 130
             RP G      +++ + K SN + + +G   +  N+ +  G         D K  + + +K
Sbjct:    55 RPLGTSIPTNSTASELKKSNTSYSFTGDYLSGGNKADLKGGYPFGGTDTDTKANEKDKEK 114

Query:   131 -----GQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV 185
                    +Y+CNICLDTAKDAV+SMCGHLFCWPCLHQWL T PNR+ CPVCKAA+DKDKV
Sbjct:   115 EHTADDSLYECNICLDTAKDAVVSMCGHLFCWPCLHQWLLTRPNRKLCPVCKAAVDKDKV 174

Query:   186 IPVYGRGGSSKTDPRDKVPPRPQGQRTEPE 215
             IP+YGR  + + DPR+KVPPRP GQRTEP+
Sbjct:   175 IPLYGRNSTHQEDPRNKVPPRPAGQRTEPD 204

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q91YT2	RN185_MOUSE	6, ., 3, ., 2, ., -	0.6134	0.4717	0.6093	yes	N/A
Q5ZIR9	RN185_CHICK	6, ., 3, ., 2, ., -	0.7	0.3790	0.4845	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	248
PLN03208	193	PLN03208, PLN03208, E3 ubiquitin-protein ligase RM	9e-21
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	2e-09
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	2e-08
COG5574	271	COG5574, PEX10, RING-finger-containing E3 ubiquiti	4e-08
smart00184	40	smart00184, RING, Ring finger	1e-07
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	2e-07
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	4e-07
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	3e-05
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	9e-05
PLN03208	193	PLN03208, PLN03208, E3 ubiquitin-protein ligase RM	3e-04
pfam05290	141	pfam05290, Baculo_IE-1, Baculovirus immediate-earl	7e-04
COG5432	391	COG5432, RAD18, RING-finger-containing E3 ubiquiti	9e-04
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	0.001
TIGR00599	397	TIGR00599, rad18, DNA repair protein rad18	0.001

>gnl|CDD|178747 PLN03208, PLN03208, E3 ubiquitin-protein ligase RMA2; Provisional

 Score = 86.3 bits (213), Expect = 9e-21
 Identities = 38/94 (40%), Positives = 54/94 (57%), Gaps = 14/94 (14%)

Query: 129 DKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQ-------------TCPV 175
           D G  +DCNICLD  +D V+++CGHLFCWPC+H+W     N +              CPV
Sbjct: 14  DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPV 73

Query: 176 CKAAIDKDKVIPVYGRGGSSKTDPRDKVPPRPQG 209
           CK+ + +  ++P+YGRG  +     + VP RP G
Sbjct: 74  CKSDVSEATLVPIYGRGQKAPQSGSN-VPSRPSG 106

Length = 193

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 51.7 bits (124), Expect = 2e-09
 Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 3/47 (6%)

Query: 135 DCNICLDTAKD-AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAI 180
           +C ICL+  ++  V+  CGH+FC  C+ +WL++  N  TCP+C+  I
Sbjct: 1   ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKN--TCPLCRTPI 45

Length = 45

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 49.0 bits (117), Expect = 2e-08
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 132 QIYDCNICLDTAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPVCKA 178
           +  +C ICLD  +D V+   CGH+FC  C+ ++L+    +  CP+C+ 
Sbjct: 1   EELECPICLDLLRDPVVLTPCGHVFCRECILRYLK---KKSKCPICRT 45

Length = 45

>gnl|CDD|227861 COG5574, PEX10, RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 52.2 bits (125), Expect = 4e-08
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVI 186
           Y C +CL+  +    + CGHLFC  CL     T    + CP+C+A +   KVI
Sbjct: 216 YKCFLCLEEPEVPSCTPCGHLFCLSCLLISW-TKKKYEFCPLCRAKVYPKKVI 267

Length = 271

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 46.7 bits (111), Expect = 1e-07
 Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 3/42 (7%)

Query: 136 CNICLDT-AKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVC 176
           C ICL+   KD VI  CGH FC  C+ +WLE+     TCP+C
Sbjct: 1   CPICLEEYLKDPVILPCGHTFCRSCIRKWLES--GNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 45.9 bits (109), Expect = 2e-07
 Identities = 21/42 (50%), Positives = 26/42 (61%), Gaps = 3/42 (7%)

Query: 136 CNICLDTAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPVC 176
           C ICL+  KD V  + CGHLFC  C+  WLE+     TCP+C
Sbjct: 1   CPICLEEPKDPVTILPCGHLFCSKCILSWLES--GNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 45.5 bits (108), Expect = 4e-07
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 6/47 (12%)

Query: 135 DCNICLD---TAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKA 178
           +C ICLD     ++ V+  CGH+F   CL +WL +     TCP+C+A
Sbjct: 2   ECPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSN---TCPLCRA 45

Length = 46

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 136 CNICLDTAKDAVISMCGHL-FCWPCLHQWLETCPNRQTCPVCKAAIDK 182
           C ICL+  ++ V   CGHL  C  C  +        + CP+C+  I+ 
Sbjct: 5   CVICLERPRNVVFLPCGHLCLCEECAKRLRSK----KKCPICRQPIES 48

Length = 49

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 42.1 bits (99), Expect = 9e-05
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 11/51 (21%)

Query: 135 DCNICLDTAKD--------AVISMCGHLFCWPCLHQWLETCPNRQTCPVCK 177
           +C IC++   D         ++S C H+FC  C+  W +    + TCPVC+
Sbjct: 176 ECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKK---EKNTCPVCR 223

Length = 238

>gnl|CDD|178747 PLN03208, PLN03208, E3 ubiquitin-protein ligase RMA2; Provisional

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 21 DQKKTDGGNDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYW 63
          D    D G D    +DCNIC D  +D V+++CGHLF W     W
Sbjct: 9  DTTLVDSGGD----FDCNICLDQVRDPVVTLCGHLFCWPCIHKW 48

Length = 193

>gnl|CDD|147470 pfam05290, Baculo_IE-1, Baculovirus immediate-early protein (IE-0)

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 133 IYDCNICLDTAKDAVI----SMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVI 186
           +Y CNIC DT+ +         CG+  C  C     + C     CPVCK +       
Sbjct: 80  LYQCNICQDTSAEEHFLKPNECCGYKICNLCYANLWKFCTVYPVCPVCKTSFKSSSSS 137

The Autographa californica multinucleocapsid nuclear polyhedrosis virus (AcMNPV) ie-1 gene product (IE-1) is thought to play a central role in stimulating early viral transcription. IE-1 has been demonstrated to activate several early viral gene promoters and to negatively regulate the promoters of two other AcMNPV regulatory genes, ie-0 and ie-2. It is thought that that IE-1 negatively regulates the expression of certain genes by binding directly, or as part of a complex, to promoter regions containing a specific IE-1-binding motif (5'-ACBYGTAA-3') near their mRNA start sites. Length = 141

>gnl|CDD|227719 COG5432, RAD18, RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

 Score = 39.7 bits (92), Expect = 9e-04
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 3/43 (6%)

Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKA 178
           C IC         + CGH FC  C+ + L T P    CPVC+ 
Sbjct: 28  CRICDCRISIPCETTCGHTFCSLCIRRHLGTQPF---CPVCRE 67

Length = 391

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)

Query: 151 CGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPV 188
           CGH+    CL  WLE    +QTCP+C+  +  D+  P 
Sbjct: 318 CGHILHLHCLKNWLE---RQQTCPICRRPVIFDQSSPT 352

Length = 491

>gnl|CDD|233043 TIGR00599, rad18, DNA repair protein rad18

 Score = 38.8 bits (90), Expect = 0.001
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKA 178
           C+IC D     V++ C H FC  C+ + L   P    CP+C+A
Sbjct: 29  CHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPK---CPLCRA 68

All proteins in this family for which functions are known are involved in nucleotide excision repair.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 397

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	248
KOG0823|consensus	230		99.85
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.71
KOG0823|consensus	230		99.63
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.4
KOG0320|consensus	187		99.31
KOG0317|consensus	293		99.31
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.3
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	99.22
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.19
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.19
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.08
PHA02929	238	N1R/p28-like protein; Provisional	99.06
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.05
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	99.03
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.97
KOG2164|consensus	513		98.96
KOG0287|consensus	442		98.91
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.91
PHA02926	242	zinc finger-like protein; Provisional	98.89
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.87
PF14634	44	zf-RING_5: zinc-RING finger domain	98.8
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.79
KOG0978|consensus	698		98.77
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.76
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.75
KOG4628|consensus	348		98.71
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.7
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.66
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.59
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	98.58
KOG4172|consensus	62		98.55
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.53
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	98.41
KOG2177|consensus	386		98.37
KOG0802|consensus	543		98.36
KOG0317|consensus	293		98.34
KOG0824|consensus	324		98.26
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.21
KOG3039|consensus	303		98.11
KOG4265|consensus	349		98.11
KOG4159|consensus	398		98.06
KOG0320|consensus	187		97.97
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	97.93
KOG0311|consensus	381		97.9
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	97.87
KOG1785|consensus	563		97.87
COG5152	259	Uncharacterized conserved protein, contains RING a	97.83
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	97.75
KOG0827|consensus	465		97.7
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	97.7
KOG1039|consensus	344		97.7
KOG2660|consensus	331		97.67
KOG0297|consensus	391		97.65
PF04641	260	Rtf2: Rtf2 RING-finger	97.63
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.63
KOG1734|consensus	328		97.61
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	97.61
KOG2879|consensus	298		97.6
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.58
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	97.58
KOG0824|consensus	324		97.55
KOG1813|consensus	313		97.53
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	97.52
KOG0804|consensus	493		97.52
KOG1645|consensus	463		97.51
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	97.47
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.34
KOG0825|consensus	1134		97.27
KOG0828|consensus	636		97.23
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	97.23
KOG4275|consensus	350		97.21
KOG1493|consensus	84		97.2
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	97.18
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	97.17
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	97.16
COG5219	1525	Uncharacterized conserved protein, contains RING Z	97.12
KOG1002|consensus	791		97.08
KOG1571|consensus	355		97.06
KOG4692|consensus	489		97.02
KOG2164|consensus	513		96.94
PHA02929	238	N1R/p28-like protein; Provisional	96.81
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	96.77
KOG2930|consensus	114		96.75
KOG0826|consensus	357		96.67
KOG0287|consensus	442		96.66
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	96.6
COG5222	427	Uncharacterized conserved protein, contains RING Z	96.52
KOG4159|consensus	398		96.45
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.42
KOG4628|consensus	348		96.33
PF14634	44	zf-RING_5: zinc-RING finger domain	96.27
COG5236	493	Uncharacterized conserved protein, contains RING Z	96.22
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	96.19
KOG2177|consensus	386		96.17
KOG4367|consensus	699		96.02
KOG1001|consensus	674		96.01
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	95.97
KOG4739|consensus	233		95.85
KOG1941|consensus	518		95.82
KOG0802|consensus	543		95.75
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.75
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	95.68
KOG4185|consensus	296		95.65
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	95.56
KOG1814|consensus	445		95.38
COG5152	259	Uncharacterized conserved protein, contains RING a	95.38
KOG2817|consensus	394		95.35
KOG1814|consensus	445		95.08
KOG0804|consensus	493		94.96
PHA02926	242	zinc finger-like protein; Provisional	94.95
KOG1813|consensus	313		94.81
PHA03096	284	p28-like protein; Provisional	94.47
KOG3800|consensus	300		94.35
KOG3002|consensus	299		94.26
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	94.0
KOG0978|consensus	698		93.81
KOG1428|consensus	3738		93.6
PHA02825	162	LAP/PHD finger-like protein; Provisional	93.54
KOG2932|consensus	389		93.51
PHA02862	156	5L protein; Provisional	93.48
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	93.38
KOG0311|consensus	381		93.37
COG5175	480	MOT2 Transcriptional repressor [Transcription]	93.35
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	93.34
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	93.34
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	93.16
KOG3113|consensus	293		93.04
KOG3161|consensus	861		92.96
KOG1100|consensus	207		92.92
KOG1952|consensus	950		92.77
KOG3970|consensus	299		92.75
KOG4362|consensus	684		92.6
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	92.26
KOG0298|consensus	1394		92.01
KOG1940|consensus	276		91.9
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	91.81
KOG2114|consensus	933		91.66
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	91.64
KOG3039|consensus	303		91.37
KOG4445|consensus	368		91.28
KOG1571|consensus	355		90.54
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	90.31
KOG4275|consensus	350		89.33
KOG1815|consensus	444		89.21
COG5109	396	Uncharacterized conserved protein, contains RING Z	89.03
KOG3899|consensus	381		88.64
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	88.46
KOG3268|consensus	234		88.36
KOG3579|consensus	352		87.64
KOG4367|consensus	699		87.36
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	86.84
KOG4172|consensus	62		86.82
KOG1645|consensus	463		84.7
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	83.21
KOG4265|consensus	349		82.17
KOG1815|consensus	444		81.94

>KOG0823|consensus

Probab=99.85  E-value=4.4e-21  Score=156.89  Aligned_cols=109  Identities=51%  Similarity=1.079  Sum_probs=90.3

Q ss_pred             CCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCCCCCCCCCC-CCCCC
Q psy2200         129 DKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSKTDPRDK-VPPRP  207 (248)
Q Consensus       129 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~rp  207 (248)
                      .....+.|.||++..++||++.|||+|||.||++|++.+.+.+.||+|+..+..+.++|+|+++....++++.+ +|+||
T Consensus        43 ~~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG~~~~~~~~~~~vP~RP  122 (230)
T KOG0823|consen   43 RDGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRGSKKPSDPRKKDVPPRP  122 (230)
T ss_pred             CCCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeeccCCCCCCCcccccCCCCC
Confidence            34567999999999999999999999999999999999888889999999999999999999999888888777 99999


Q ss_pred             CCCCCCCCC-----CC--Ccc-cCC-------CcEEeeecccchh
Q psy2200         208 QGQRTEPEN-----SS--SCY-LLE-------TVFHFCVQFCTSG  237 (248)
Q Consensus       208 ~~~~~~~~~-----~~--~~~-~g~-------~~f~~~~g~~~~~  237 (248)
                      +++|.+..+     .+  .++ +|.       ..|++++|+....
T Consensus       123 ~~~R~e~~~p~~~~~~~~g~r~~g~~~~~~~~~~f~~s~~i~~~~  167 (230)
T KOG0823|consen  123 AGQRYESKRPTPQNRGNHGFRFFGFRLGEESSNRFMYSFGIGLFG  167 (230)
T ss_pred             CCccccccCCCCccccccccccccccccccCCcceeEEeecccCC
Confidence            999975322     22  333 221       1388888876433

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.71  E-value=5.6e-17  Score=130.69  Aligned_cols=85  Identities=44%  Similarity=1.125  Sum_probs=70.7

Q ss_pred             CCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhC-------------CCCCcccccccccccCCceeeecCCCCC
Q psy2200         129 DKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETC-------------PNRQTCPVCKAAIDKDKVIPVYGRGGSS  195 (248)
Q Consensus       129 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-------------~~~~~CP~Cr~~~~~~~~~~~~~~~~~~  195 (248)
                      +..+.+.|+||++.+.+|++++|||+||+.||..|+...             .+...||+||..+...+++++|..+...
T Consensus        14 ~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg~~~   93 (193)
T PLN03208         14 DSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRGQKA   93 (193)
T ss_pred             cCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccCCCC
Confidence            334568999999999999999999999999999998642             1245899999999999999999998764


Q ss_pred             CCCCCCCCCCCCCCCCCCC
Q psy2200         196 KTDPRDKVPPRPQGQRTEP  214 (248)
Q Consensus       196 ~~~~~~~~~~rp~~~~~~~  214 (248)
                       ......+|+||.+.+.++
T Consensus        94 -~~~~~~iP~rp~~~~~~~  111 (193)
T PLN03208         94 -PQSGSNVPSRPSGPVYDL  111 (193)
T ss_pred             -CCCCCCCCcCCCCCccCC
Confidence             344567899998887664

>KOG0823|consensus

Probab=99.63  E-value=3.5e-16  Score=128.23  Aligned_cols=67  Identities=49%  Similarity=1.081  Sum_probs=56.3

Q ss_pred             CCCCceeccccCCCCCCceEeccCccc-ccceecc-------------------------ccCCCC-CCCCCCC-CCCCC
Q psy2200          30 DKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYW-------------------------PGRGGS-EIDPRDE-VPPRP   81 (248)
Q Consensus        30 ~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~-------------------------y~Rg~~-~~~p~~~-~p~rp   81 (248)
                      .....|+|+||||.++|||+|.|||+| |.|+|+|                         ||||.. ..+++.. .|+||
T Consensus        43 ~~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG~~~~~~~~~~~vP~RP  122 (230)
T KOG0823|consen   43 RDGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRGSKKPSDPRKKDVPPRP  122 (230)
T ss_pred             CCCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeeccCCCCCCCcccccCCCCC
Confidence            357789999999999999999999999 6699999                         899984 7888877 99999


Q ss_pred             CCCCccccccchhhh
Q psy2200          82 QGQRTERENSSVQSK   96 (248)
Q Consensus        82 ~~~~~e~~~~~~~~~   96 (248)
                      +++|.+.+....+..
T Consensus       123 ~~~R~e~~~p~~~~~  137 (230)
T KOG0823|consen  123 AGQRYESKRPTPQNR  137 (230)
T ss_pred             CCccccccCCCCccc
Confidence            999987665544443

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.40  E-value=1.6e-13  Score=84.67  Aligned_cols=41  Identities=44%  Similarity=0.959  Sum_probs=32.7

Q ss_pred             ecccccccCCcEEccCCCccCHhHHHHHHHhCCCC-Cccccc
Q psy2200         136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNR-QTCPVC  176 (248)
Q Consensus       136 C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~-~~CP~C  176 (248)
                      |+||++++.+|+.++|||+||..||.+|++..... ..||+|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999999999999999999999999876533 689987

>KOG0320|consensus

Probab=99.31  E-value=2.6e-12  Score=101.24  Aligned_cols=58  Identities=34%  Similarity=0.864  Sum_probs=50.6

Q ss_pred             CCCceeecccccccCC--cEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeec
Q psy2200         130 KGQIYDCNICLDTAKD--AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYG  190 (248)
Q Consensus       130 ~~~~~~C~IC~~~~~~--p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~  190 (248)
                      .+..+.|+||++.+.+  |+.+.|||+||..||...++...   .||+|++.|..+.++++|.
T Consensus       128 ~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~---~CP~C~kkIt~k~~~rI~L  187 (187)
T KOG0320|consen  128 KEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTN---KCPTCRKKITHKQFHRIYL  187 (187)
T ss_pred             cccccCCCceecchhhccccccccchhHHHHHHHHHHHhCC---CCCCcccccchhhheeccC
Confidence            3456899999998875  45679999999999999999877   9999999999999998874

>KOG0317|consensus

Probab=99.31  E-value=1.8e-12  Score=109.54  Aligned_cols=56  Identities=30%  Similarity=0.950  Sum_probs=50.0

Q ss_pred             CCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceee
Q psy2200         130 KGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPV  188 (248)
Q Consensus       130 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~  188 (248)
                      .+....|.+|++...+|..+||||+|||.||..|...+.   .||+||..+...+++-.
T Consensus       236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~---eCPlCR~~~~pskvi~L  291 (293)
T KOG0317|consen  236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKA---ECPLCREKFQPSKVICL  291 (293)
T ss_pred             CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcccc---CCCcccccCCCcceeee
Confidence            345579999999999999999999999999999999877   89999999998877543

>smart00504 Ubox Modified RING finger domain

Probab=99.30  E-value=7e-13  Score=89.26  Aligned_cols=58  Identities=26%  Similarity=0.481  Sum_probs=52.3

Q ss_pred             eeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCC
Q psy2200         134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGS  194 (248)
Q Consensus       134 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~  194 (248)
                      +.|+||.+.+.+|++++|||+||+.||..|++.+.   .||+|+..+..+++++++.++..
T Consensus         2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~---~cP~~~~~~~~~~l~~~~~l~~~   59 (63)
T smart00504        2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHG---TDPVTGQPLTHEDLIPNLALKSA   59 (63)
T ss_pred             cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCC---CCCCCcCCCChhhceeCHHHHHH
Confidence            67999999999999999999999999999998855   99999999998999888766543

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=99.22  E-value=6.4e-12  Score=76.41  Aligned_cols=38  Identities=53%  Similarity=1.324  Sum_probs=33.1

Q ss_pred             ecccccccCCc-EEccCCCccCHhHHHHHHHhCCCCCccccc
Q psy2200         136 CNICLDTAKDA-VISMCGHLFCWPCLHQWLETCPNRQTCPVC  176 (248)
Q Consensus       136 C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C  176 (248)
                      |+||++.+.+| ++++|||+||..|+.+|++...   +||+|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~---~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNP---KCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTS---B-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcC---CCcCC
Confidence            89999999999 6789999999999999999854   99987

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.19  E-value=8e-12  Score=78.06  Aligned_cols=40  Identities=40%  Similarity=1.110  Sum_probs=34.9

Q ss_pred             eecccccccC---CcEEccCCCccCHhHHHHHHHhCCCCCcccccc
Q psy2200         135 DCNICLDTAK---DAVISMCGHLFCWPCLHQWLETCPNRQTCPVCK  177 (248)
Q Consensus       135 ~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr  177 (248)
                      .|+||++.+.   ..+.++|||.||..||..|++.+.   +||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~---~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNN---SCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSS---B-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCC---cCCccC
Confidence            6999999884   457789999999999999999876   999997

...

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.19  E-value=1.2e-11  Score=79.48  Aligned_cols=46  Identities=37%  Similarity=0.979  Sum_probs=40.4

Q ss_pred             ceeecccccccCCcEEccCCCc-cCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         133 IYDCNICLDTAKDAVISMCGHL-FCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       133 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                      +..|.||++...+.++++|||. ||..|+.+|++...   .||+||++|.
T Consensus         2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~---~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKK---KCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTS---BBTTTTBB-S
T ss_pred             cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCC---CCCcCChhhc
Confidence            4689999999999999999999 99999999999655   9999999885

...

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.08  E-value=2.9e-11  Score=108.55  Aligned_cols=66  Identities=26%  Similarity=0.546  Sum_probs=56.5

Q ss_pred             ccCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCCC
Q psy2200         127 ENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSS  195 (248)
Q Consensus       127 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~  195 (248)
                      ...++..+.|+||++.+.+|++++|||.||..||..|+....   .||+|+..+....+..++.+..++
T Consensus        20 l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~---~CP~Cr~~~~~~~Lr~N~~L~~iV   85 (397)
T TIGR00599        20 LYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQP---KCPLCRAEDQESKLRSNWLVSEIV   85 (397)
T ss_pred             ccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCC---CCCCCCCccccccCccchHHHHHH
Confidence            345667789999999999999999999999999999998754   899999999887777777666554

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.06  E-value=1.2e-10  Score=97.99  Aligned_cols=47  Identities=34%  Similarity=0.952  Sum_probs=40.2

Q ss_pred             CceeecccccccCCc--------EEccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         132 QIYDCNICLDTAKDA--------VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       132 ~~~~C~IC~~~~~~p--------~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                      ....|+||++.+.++        ++++|||.||..||..|++...   +||+||..+.
T Consensus       173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~---tCPlCR~~~~  227 (238)
T PHA02929        173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKN---TCPVCRTPFI  227 (238)
T ss_pred             CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCC---CCCCCCCEee
Confidence            346899999987643        5568999999999999999866   9999999887

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.05  E-value=6.3e-11  Score=82.22  Aligned_cols=61  Identities=23%  Similarity=0.431  Sum_probs=48.8

Q ss_pred             CceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCC
Q psy2200         132 QIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGS  194 (248)
Q Consensus       132 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~  194 (248)
                      +.+.|+|+.+.|.+||++++||+|++.+|..|+...  ...||+|+..+...++++++.+...
T Consensus         3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~--~~~~P~t~~~l~~~~l~pn~~Lk~~   63 (73)
T PF04564_consen    3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQN--GGTDPFTRQPLSESDLIPNRALKSA   63 (73)
T ss_dssp             GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTT--SSB-TTT-SB-SGGGSEE-HHHHHH
T ss_pred             cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcC--CCCCCCCCCcCCcccceECHHHHHH
Confidence            468999999999999999999999999999999982  2499999999999999999876544

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.03  E-value=1.8e-10  Score=70.66  Aligned_cols=40  Identities=48%  Similarity=1.231  Sum_probs=35.9

Q ss_pred             ecccccccCCcE-EccCCCccCHhHHHHHHHhCCCCCccccc
Q psy2200         136 CNICLDTAKDAV-ISMCGHLFCWPCLHQWLETCPNRQTCPVC  176 (248)
Q Consensus       136 C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C  176 (248)
                      |+||++.+.+++ +++|||.||..|+.+|++.. +...||+|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~-~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENS-GSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHT-SSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhc-CCccCCcC
Confidence            899999999998 88999999999999999963 35689987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.97  E-value=3.4e-10  Score=69.89  Aligned_cols=38  Identities=37%  Similarity=0.933  Sum_probs=23.8

Q ss_pred             ecccccccCC----cEEccCCCccCHhHHHHHHHhCC-CCCccc
Q psy2200         136 CNICLDTAKD----AVISMCGHLFCWPCLHQWLETCP-NRQTCP  174 (248)
Q Consensus       136 C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP  174 (248)
                      |+||++ +.+    |++|+|||+||..|+.++++... +..+||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 777    89999999999999999998642 356776

>KOG2164|consensus

Probab=98.96  E-value=3.7e-10  Score=102.34  Aligned_cols=62  Identities=31%  Similarity=0.809  Sum_probs=55.4

Q ss_pred             ceeecccccccCCcEEccCCCccCHhHHHHHHHhC--CCCCcccccccccccCCceeeecCCCC
Q psy2200         133 IYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETC--PNRQTCPVCKAAIDKDKVIPVYGRGGS  194 (248)
Q Consensus       133 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--~~~~~CP~Cr~~~~~~~~~~~~~~~~~  194 (248)
                      ...||||++...-|+.+.|||+||..||.+++...  ...+.||+|+..|..+++.+++.....
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~q  249 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQ  249 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeecccc
Confidence            67899999999999999999999999999988764  236799999999999999999987764

>KOG0287|consensus

Probab=98.91  E-value=1.7e-10  Score=99.35  Aligned_cols=65  Identities=22%  Similarity=0.548  Sum_probs=57.6

Q ss_pred             cCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCCC
Q psy2200         128 NDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSS  195 (248)
Q Consensus       128 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~  195 (248)
                      ..+...+.|-||.++|..|++++|||.||.-||..+|..++   .||.|+..+...++..++.+..++
T Consensus        18 k~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p---~CP~C~~~~~Es~Lr~n~il~Eiv   82 (442)
T KOG0287|consen   18 KTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKP---QCPTCCVTVTESDLRNNRILDEIV   82 (442)
T ss_pred             hhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccCC---CCCceecccchhhhhhhhHHHHHH
Confidence            34566789999999999999999999999999999999887   999999999998888877766554

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.91  E-value=1.2e-09  Score=67.68  Aligned_cols=44  Identities=41%  Similarity=1.288  Sum_probs=36.7

Q ss_pred             eecccccccCCcEEcc-CCCccCHhHHHHHHHhCCCCCccccccccc
Q psy2200         135 DCNICLDTAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPVCKAAI  180 (248)
Q Consensus       135 ~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~  180 (248)
                      .|+||++.+.+++.+. |||.||..|+..|++..  ...||+|+..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~--~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSG--KNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhC--cCCCCCCCCcC
Confidence            4899999997776665 99999999999999872  34899998754

>PHA02926 zinc finger-like protein; Provisional

Probab=98.89  E-value=9.5e-10  Score=90.01  Aligned_cols=61  Identities=23%  Similarity=0.739  Sum_probs=45.3

Q ss_pred             CCCceeecccccccCC---------cEEccCCCccCHhHHHHHHHhCC---CCCcccccccccccCCceeeec
Q psy2200         130 KGQIYDCNICLDTAKD---------AVISMCGHLFCWPCLHQWLETCP---NRQTCPVCKAAIDKDKVIPVYG  190 (248)
Q Consensus       130 ~~~~~~C~IC~~~~~~---------p~~~~CgH~fC~~Ci~~~~~~~~---~~~~CP~Cr~~~~~~~~~~~~~  190 (248)
                      ...+..|+||++...+         ++..+|+|.||..||..|.+.+.   ....||+||..+..-...+.|.
T Consensus       167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSrf~~  239 (242)
T PHA02926        167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSKFYK  239 (242)
T ss_pred             ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeecccccee
Confidence            3445799999997532         35669999999999999998642   2457999999987554444443

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=8.2e-10  Score=92.44  Aligned_cols=53  Identities=36%  Similarity=0.847  Sum_probs=46.8

Q ss_pred             CCceeecccccccCCcEEccCCCccCHhHHHH-HHHhCCCCCcccccccccccCCc
Q psy2200         131 GQIYDCNICLDTAKDAVISMCGHLFCWPCLHQ-WLETCPNRQTCPVCKAAIDKDKV  185 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~-~~~~~~~~~~CP~Cr~~~~~~~~  185 (248)
                      ..++.|.||++....|..++|||+||+.||.. |...+.  -.||+||+.+..+++
T Consensus       213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~--~~CplCRak~~pk~v  266 (271)
T COG5574         213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKY--EFCPLCRAKVYPKKV  266 (271)
T ss_pred             ccccceeeeecccCCcccccccchhhHHHHHHHHHhhcc--ccCchhhhhccchhh
Confidence            45789999999999999999999999999999 887765  259999999887766

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.80  E-value=2.6e-09  Score=66.56  Aligned_cols=41  Identities=34%  Similarity=1.027  Sum_probs=34.1

Q ss_pred             eeccccccc---CCcEEccCCCccCHhHHHHHHHhCCCCCccccccc
Q psy2200         135 DCNICLDTA---KDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKA  178 (248)
Q Consensus       135 ~C~IC~~~~---~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~  178 (248)
                      .|+||++.+   ..+++++|||+||..|+..+...   ...||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~---~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGK---SVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCC---CCCCcCCCC
Confidence            489999988   35688899999999999998832   449999985

>smart00184 RING Ring finger

Probab=98.79  E-value=4.6e-09  Score=62.72  Aligned_cols=39  Identities=49%  Similarity=1.317  Sum_probs=34.2

Q ss_pred             ecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCccccc
Q psy2200         136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVC  176 (248)
Q Consensus       136 C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C  176 (248)
                      |+||++....++.++|||.||..|+..|++..  ...||+|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~--~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSG--NNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHhC--cCCCCCC
Confidence            78999998999999999999999999999832  3479987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG0978|consensus

Probab=98.77  E-value=3.7e-10  Score=106.74  Aligned_cols=66  Identities=32%  Similarity=0.674  Sum_probs=57.8

Q ss_pred             CCCCccCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeec
Q psy2200         123 KTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYG  190 (248)
Q Consensus       123 ~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~  190 (248)
                      +..+.......+.|++|...+++.+++.|||+||..|+...+..+.  ++||.|...|...|+.++|.
T Consensus       633 L~EElk~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRq--RKCP~Cn~aFganDv~~I~l  698 (698)
T KOG0978|consen  633 LAEELKEYKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQ--RKCPKCNAAFGANDVHRIHL  698 (698)
T ss_pred             HHHHHHHHHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhc--CCCCCCCCCCCcccccccCC
Confidence            3445555667789999999999999999999999999999999865  69999999999999998873

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.76  E-value=4.9e-09  Score=72.62  Aligned_cols=40  Identities=43%  Similarity=1.168  Sum_probs=32.8

Q ss_pred             eecccccccCC------------c-EEccCCCccCHhHHHHHHHhCCCCCcccccc
Q psy2200         135 DCNICLDTAKD------------A-VISMCGHLFCWPCLHQWLETCPNRQTCPVCK  177 (248)
Q Consensus       135 ~C~IC~~~~~~------------p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr  177 (248)
                      .|+||++.+.+            + +..+|||.|+..||.+|++...   +||+||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~---~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN---TCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS---B-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC---cCCCCC
Confidence            49999998832            2 3448999999999999999876   999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.75  E-value=2.6e-09  Score=90.32  Aligned_cols=63  Identities=27%  Similarity=0.570  Sum_probs=52.6

Q ss_pred             ccCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCC
Q psy2200         127 ENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRG  192 (248)
Q Consensus       127 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~  192 (248)
                      ...+...+.|-||.+++..|+.++|||+||.-||..+|..++   .||+||.......+...+...
T Consensus        19 L~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp---~CP~Cr~~~~esrlr~~s~~~   81 (391)
T COG5432          19 LKGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQP---FCPVCREDPCESRLRGSSGSR   81 (391)
T ss_pred             hhcchhHHHhhhhhheeecceecccccchhHHHHHHHhcCCC---CCccccccHHhhhcccchhHH
Confidence            344556689999999999999999999999999999999887   999999988766555544443

>KOG4628|consensus

Probab=98.71  E-value=9.6e-09  Score=90.33  Aligned_cols=49  Identities=37%  Similarity=0.816  Sum_probs=41.6

Q ss_pred             eeecccccccCCc---EEccCCCccCHhHHHHHHHhCCCCCcccccccccccCC
Q psy2200         134 YDCNICLDTAKDA---VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDK  184 (248)
Q Consensus       134 ~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~  184 (248)
                      ..|+||+|.|...   ++|||+|.||..||+.|+....  ..||+|+..+....
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r--~~CPvCK~di~~~~  281 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTR--TFCPVCKRDIRTDS  281 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcC--ccCCCCCCcCCCCC
Confidence            5999999999865   6789999999999999998853  46999999776543

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.70  E-value=1.3e-08  Score=82.40  Aligned_cols=34  Identities=44%  Similarity=1.164  Sum_probs=29.4

Q ss_pred             CCCceeccccCCCCCCceEeccCccc-ccceeccc
Q psy2200          31 KSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWP   64 (248)
Q Consensus        31 ~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y   64 (248)
                      ....|+|+||+|.+++||+|+|||+| |.|+..|.
T Consensus        15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl   49 (193)
T PLN03208         15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWT   49 (193)
T ss_pred             CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHH
Confidence            34569999999999999999999999 55777774

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.66  E-value=5.9e-09  Score=64.23  Aligned_cols=30  Identities=37%  Similarity=0.528  Sum_probs=23.1

Q ss_pred             ccccCCCCCCceEeccCcccc-cceeccccC
Q psy2200          37 CNICFDTAKDAVISMCGHLFW-LKFFYWPGR   66 (248)
Q Consensus        37 C~iCld~~~~~v~~~CGH~f~-~cv~~~y~R   66 (248)
                      |+||+|++++||+++|||+|+ .|+..|+..
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~   31 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKE   31 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCC
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHc
Confidence            899999999999999999995 566665443

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.59  E-value=5e-09  Score=69.25  Aligned_cols=54  Identities=28%  Similarity=0.714  Sum_probs=28.3

Q ss_pred             CceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeec
Q psy2200         132 QIYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYG  190 (248)
Q Consensus       132 ~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~  190 (248)
                      +.+.|++|.+.+++||.+ .|.|+||..||..-+..     .||+|+.+-...|+.-|..
T Consensus         6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~-----~CPvC~~Paw~qD~~~Nrq   60 (65)
T PF14835_consen    6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS-----ECPVCHTPAWIQDIQINRQ   60 (65)
T ss_dssp             HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT-----B-SSS--B-S-SS----HH
T ss_pred             HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC-----CCCCcCChHHHHHHHhhhh
Confidence            347899999999999865 89999999999775543     7999999988777765543

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=3.5e-08  Score=86.19  Aligned_cols=48  Identities=33%  Similarity=0.790  Sum_probs=40.7

Q ss_pred             CceeecccccccCC-------------cEEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200         132 QIYDCNICLDTAKD-------------AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK  182 (248)
Q Consensus       132 ~~~~C~IC~~~~~~-------------p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~  182 (248)
                      ++-.|.||++.+..             |..+||||.++..|++.|++..+   +||+||.++..
T Consensus       286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQ---TCPICr~p~if  346 (491)
T COG5243         286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQ---TCPICRRPVIF  346 (491)
T ss_pred             CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhcc---CCCcccCcccc
Confidence            34689999998542             36889999999999999999887   99999998543

>KOG4172|consensus

Probab=98.55  E-value=8.2e-09  Score=65.44  Aligned_cols=51  Identities=33%  Similarity=0.892  Sum_probs=42.5

Q ss_pred             eeecccccccCCcEEccCCCc-cCHhHHHHHHHhCCCCCcccccccccccCCceee
Q psy2200         134 YDCNICLDTAKDAVISMCGHL-FCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPV  188 (248)
Q Consensus       134 ~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~  188 (248)
                      .+|.||++...+.|+..|||+ .|..|-.+.++..  +..||+||++|.  +++.-
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~--~g~CPiCRapi~--dvIkT   59 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKAL--HGCCPICRAPIK--DVIKT   59 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHcc--CCcCcchhhHHH--HHHHh
Confidence            589999999999999999998 9999998877742  339999999986  44433

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.53  E-value=7.2e-08  Score=67.74  Aligned_cols=49  Identities=27%  Similarity=0.678  Sum_probs=37.4

Q ss_pred             eeecccccccCC------------cEEc-cCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200         134 YDCNICLDTAKD------------AVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK  182 (248)
Q Consensus       134 ~~C~IC~~~~~~------------p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~  182 (248)
                      ..|.||...|..            |+++ .|+|.|+..||.+|+........||+||+....
T Consensus        22 d~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~   83 (85)
T PF12861_consen   22 DVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF   83 (85)
T ss_pred             CceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence            467777766541            3333 799999999999999975445699999998754

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=1.7e-07  Score=79.94  Aligned_cols=47  Identities=32%  Similarity=0.774  Sum_probs=39.1

Q ss_pred             ceeecccccccCC---cEEccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         133 IYDCNICLDTAKD---AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       133 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                      ..+|+||++.+..   -+++||.|.||..|+.+|+-...  ..||+||..+.
T Consensus       323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~--~~CPvCrt~iP  372 (374)
T COG5540         323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYS--NKCPVCRTAIP  372 (374)
T ss_pred             CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhc--ccCCccCCCCC
Confidence            4799999998763   37789999999999999998422  28999998875

>KOG2177|consensus

Probab=98.37  E-value=1e-07  Score=82.49  Aligned_cols=46  Identities=37%  Similarity=0.890  Sum_probs=40.8

Q ss_pred             CCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCccccccc
Q psy2200         130 KGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKA  178 (248)
Q Consensus       130 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~  178 (248)
                      ..+.+.|+||++++.+|++++|||.||..|+..++.   ....||.||.
T Consensus        10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~---~~~~Cp~cr~   55 (386)
T KOG2177|consen   10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE---GPLSCPVCRP   55 (386)
T ss_pred             ccccccChhhHHHhhcCccccccchHhHHHHHHhcC---CCcCCcccCC
Confidence            456689999999999999999999999999999988   2469999994

>KOG0802|consensus

Probab=98.36  E-value=1.9e-07  Score=88.42  Aligned_cols=51  Identities=31%  Similarity=0.703  Sum_probs=44.2

Q ss_pred             CceeecccccccCC-----cEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCc
Q psy2200         132 QIYDCNICLDTAKD-----AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV  185 (248)
Q Consensus       132 ~~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~  185 (248)
                      ....|.||.+.+..     +.+++|||+||..|+..|++...   +||+||..+.....
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~q---tCP~CR~~~~~~~~  345 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQ---TCPTCRTVLYDYVL  345 (543)
T ss_pred             cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhC---cCCcchhhhhcccc
Confidence            34689999999998     78999999999999999999977   99999996554443

>KOG0317|consensus

Probab=98.34  E-value=1.5e-07  Score=79.89  Aligned_cols=50  Identities=18%  Similarity=0.496  Sum_probs=38.8

Q ss_pred             CCCCCCCCCceeccccCCCCCCceEeccCccc-ccceeccccCCCCCCCCCCC
Q psy2200          25 TDGGNDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGGSEIDPRDE   76 (248)
Q Consensus        25 ~~~~~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~~   76 (248)
                      ..+..-..+.++|.+||+.-.+|..|||||+| |.|+..|.....  .||.+.
T Consensus       230 ~~~~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~--eCPlCR  280 (293)
T KOG0317|consen  230 NSLSSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKA--ECPLCR  280 (293)
T ss_pred             cCCccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcccc--CCCccc
Confidence            34455567789999999999999999999999 668888866443  355443

>KOG0824|consensus

Probab=98.26  E-value=3.3e-07  Score=78.23  Aligned_cols=51  Identities=31%  Similarity=0.681  Sum_probs=43.9

Q ss_pred             eeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCce
Q psy2200         134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVI  186 (248)
Q Consensus       134 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~  186 (248)
                      .+|+||+.....|+.+.|+|.||+.||.--....  .+.|++||.+|..+.+.
T Consensus         8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~nd--k~~CavCR~pids~i~~   58 (324)
T KOG0824|consen    8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKND--KKTCAVCRFPIDSTIDF   58 (324)
T ss_pred             CcceeeeccCCcCccccccchhhhhhhcchhhcC--CCCCceecCCCCcchhc
Confidence            4899999999999999999999999999866653  35799999999865543

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.21  E-value=9.7e-07  Score=76.64  Aligned_cols=52  Identities=23%  Similarity=0.643  Sum_probs=39.3

Q ss_pred             eeecccccc-cCCcE---Ec-cCCCccCHhHHHHHHHhCCCCCcccccccccccCCcee
Q psy2200         134 YDCNICLDT-AKDAV---IS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIP  187 (248)
Q Consensus       134 ~~C~IC~~~-~~~p~---~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~  187 (248)
                      ..||+|+.. +.+|.   ++ +|||.||..|+...+...  ...||.|+..+....+.+
T Consensus         4 ~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~--~~~CP~C~~~lrk~~fr~   60 (309)
T TIGR00570         4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG--SGSCPECDTPLRKNNFRV   60 (309)
T ss_pred             CCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCC--CCCCCCCCCccchhhccc
Confidence            589999983 33442   22 799999999999977543  348999999998877543

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG3039|consensus

Probab=98.11  E-value=6.2e-06  Score=68.61  Aligned_cols=56  Identities=20%  Similarity=0.389  Sum_probs=49.2

Q ss_pred             CceeecccccccCCc----EEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeec
Q psy2200         132 QIYDCNICLDTAKDA----VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYG  190 (248)
Q Consensus       132 ~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~  190 (248)
                      ..+.|+||.+.+.+.    ++-+|||+||..|+.+++....   .||+|-.++..++++.+..
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~---v~pv~d~plkdrdiI~Lqr  279 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDM---VDPVTDKPLKDRDIIGLQR  279 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccc---cccCCCCcCcccceEeeec
Confidence            568999999999875    4449999999999999999887   9999999999999987643

>KOG4265|consensus

Probab=98.11  E-value=2.3e-06  Score=74.97  Aligned_cols=48  Identities=31%  Similarity=0.782  Sum_probs=42.5

Q ss_pred             CCceeecccccccCCcEEccCCCc-cCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         131 GQIYDCNICLDTAKDAVISMCGHL-FCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                      +...+|.||+...++-++|||.|+ .|..|.+...-+++   .||+||+.|.
T Consensus       288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n---~CPICRqpi~  336 (349)
T KOG4265|consen  288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTN---NCPICRQPIE  336 (349)
T ss_pred             cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhc---CCCccccchH
Confidence            335689999999999999999998 99999998776655   8999999986

>KOG4159|consensus

Probab=98.06  E-value=1.9e-06  Score=77.76  Aligned_cols=51  Identities=27%  Similarity=0.799  Sum_probs=45.5

Q ss_pred             CCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200         129 DKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK  182 (248)
Q Consensus       129 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~  182 (248)
                      .....+.|.||...+..|+.++|||.||..||.+-+....   .||.||..+..
T Consensus        80 ~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~---~cp~Cr~~l~e  130 (398)
T KOG4159|consen   80 EIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQET---ECPLCRDELVE  130 (398)
T ss_pred             cccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCC---CCccccccccc
Confidence            3467799999999999999999999999999999887655   99999998874

>KOG0320|consensus

Probab=97.97  E-value=3.5e-06  Score=66.89  Aligned_cols=36  Identities=31%  Similarity=0.635  Sum_probs=27.8

Q ss_pred             CCCCCCceeccccCCCCCC--ceEeccCcccccceecc
Q psy2200          28 GNDKSQIYDCNICFDTAKD--AVISMCGHLFWLKFFYW   63 (248)
Q Consensus        28 ~~~~~~~~~C~iCld~~~~--~v~~~CGH~f~~cv~~~   63 (248)
                      .......|.|+||||...+  ||.|.|||+||..+++-
T Consensus       125 ~~~~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~  162 (187)
T KOG0320|consen  125 PLRKEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKD  162 (187)
T ss_pred             ccccccccCCCceecchhhccccccccchhHHHHHHHH
Confidence            3445566999999988664  56799999998877663

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=97.93  E-value=2e-06  Score=51.94  Aligned_cols=30  Identities=33%  Similarity=0.705  Sum_probs=23.9

Q ss_pred             ccccCCCCCCc-eEeccCccc-ccceeccccC
Q psy2200          37 CNICFDTAKDA-VISMCGHLF-WLKFFYWPGR   66 (248)
Q Consensus        37 C~iCld~~~~~-v~~~CGH~f-~~cv~~~y~R   66 (248)
                      |+||+|.+.+| ++++|||+| ..|+.+|+..
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~   32 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK   32 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHC
Confidence            89999999999 689999999 5566666544

>KOG0311|consensus

Probab=97.90  E-value=1.2e-06  Score=76.32  Aligned_cols=53  Identities=26%  Similarity=0.614  Sum_probs=43.7

Q ss_pred             cCCCCceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200         128 NDKGQIYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK  182 (248)
Q Consensus       128 ~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~  182 (248)
                      ..+...+.|+||++.++..+.+ .|+|.||..||..-++..+  ..||.||+.+..
T Consensus        38 ~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn--~ecptcRk~l~S   91 (381)
T KOG0311|consen   38 AMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGN--NECPTCRKKLVS   91 (381)
T ss_pred             HHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcC--CCCchHHhhccc
Confidence            3455678999999999987766 6999999999998887744  599999997653

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=97.87  E-value=6.5e-06  Score=54.01  Aligned_cols=43  Identities=33%  Similarity=0.616  Sum_probs=30.8

Q ss_pred             CceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCcccc
Q psy2200         132 QIYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPV  175 (248)
Q Consensus       132 ~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~  175 (248)
                      ..+.|||.+..+.+||.- .|||+|.+..|..|+... +...||+
T Consensus        10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~-~~~~CPv   53 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRN-GSKRCPV   53 (57)
T ss_dssp             --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTT-S-EE-SC
T ss_pred             eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhc-CCCCCCC
Confidence            447999999999999886 899999999999999443 3679998

>KOG1785|consensus

Probab=97.87  E-value=6.9e-06  Score=72.72  Aligned_cols=56  Identities=36%  Similarity=0.813  Sum_probs=47.2

Q ss_pred             eecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecC
Q psy2200         135 DCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGR  191 (248)
Q Consensus       135 ~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~  191 (248)
                      .|.||-+.-++..+-||||..|..|+..|..... ...||.||..|.-...+.++..
T Consensus       371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~-gq~CPFCRcEIKGte~viid~F  426 (563)
T KOG1785|consen  371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDE-GQTCPFCRCEIKGTEPVIIDPF  426 (563)
T ss_pred             HHHHhhccCCCcccccccchHHHHHHHhhcccCC-CCCCCceeeEeccccceeeecc
Confidence            6999999999888889999999999999997653 4599999999987766655543

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.83  E-value=8.2e-06  Score=65.79  Aligned_cols=46  Identities=30%  Similarity=0.676  Sum_probs=40.6

Q ss_pred             CceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCccccccccc
Q psy2200         132 QIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAI  180 (248)
Q Consensus       132 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~  180 (248)
                      -.+.|.||...+..||++.|||.||..|..+-.+...   .|-+|.+..
T Consensus       195 IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~---~C~~Cgk~t  240 (259)
T COG5152         195 IPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGD---ECGVCGKAT  240 (259)
T ss_pred             CceeehhchhhccchhhhhcchhHHHHHHHHHhccCC---cceecchhh
Confidence            3589999999999999999999999999988877665   899997754

>smart00504 Ubox Modified RING finger domain

Probab=97.75  E-value=9.4e-06  Score=54.13  Aligned_cols=41  Identities=24%  Similarity=0.374  Sum_probs=31.4

Q ss_pred             ceeccccCCCCCCceEeccCccc-ccceeccccCCCCCCCCCCC
Q psy2200          34 IYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGGSEIDPRDE   76 (248)
Q Consensus        34 ~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~~   76 (248)
                      .|.|+||++++.+||+++|||+| -.|+..|+..  ...+|...
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~--~~~cP~~~   42 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS--HGTDPVTG   42 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH--CCCCCCCc
Confidence            37899999999999999999999 4556666544  34566543

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0827|consensus

Probab=97.70  E-value=2e-05  Score=69.61  Aligned_cols=53  Identities=36%  Similarity=0.950  Sum_probs=41.4

Q ss_pred             eeecccccccCCcE----EccCCCccCHhHHHHHHHhCCCCCcccccccccccCCce
Q psy2200         134 YDCNICLDTAKDAV----ISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVI  186 (248)
Q Consensus       134 ~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~  186 (248)
                      -.|.||.+.+.+..    +-.|||+|+..|+.+|++..+..+.||+|+-.+....++
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~   61 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA   61 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceeee
Confidence            47999976554432    235999999999999999988668999999666666555

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.70  E-value=7.1e-06  Score=49.95  Aligned_cols=30  Identities=33%  Similarity=0.724  Sum_probs=25.3

Q ss_pred             ccccCCCCCCce-EeccCccc-ccceeccccC
Q psy2200          37 CNICFDTAKDAV-ISMCGHLF-WLKFFYWPGR   66 (248)
Q Consensus        37 C~iCld~~~~~v-~~~CGH~f-~~cv~~~y~R   66 (248)
                      |+||++.+.+++ +++|||.| ..|+.+|+..
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~   32 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLEN   32 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHH
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHh
Confidence            899999999999 99999999 5566666553

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG1039|consensus

Probab=97.70  E-value=1.8e-05  Score=70.14  Aligned_cols=62  Identities=21%  Similarity=0.656  Sum_probs=44.8

Q ss_pred             CCceeecccccccCCcE-----E---ccCCCccCHhHHHHHHHhCCC----CCcccccccccccCCceeeecCC
Q psy2200         131 GQIYDCNICLDTAKDAV-----I---SMCGHLFCWPCLHQWLETCPN----RQTCPVCKAAIDKDKVIPVYGRG  192 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~p~-----~---~~CgH~fC~~Ci~~~~~~~~~----~~~CP~Cr~~~~~~~~~~~~~~~  192 (248)
                      .....|.||++...+..     .   .+|-|.||..||..|-.....    .+.||.||...........|...
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~Wv~t  232 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSFWVET  232 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccccccccceeeee
Confidence            34578999999877655     3   579999999999999954331    46999999887654433334333

>KOG2660|consensus

Probab=97.67  E-value=8.7e-06  Score=70.60  Aligned_cols=54  Identities=30%  Similarity=0.644  Sum_probs=46.2

Q ss_pred             CCCCceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCcccccccccccCCc
Q psy2200         129 DKGQIYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV  185 (248)
Q Consensus       129 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~  185 (248)
                      .......|.+|..++.++..+ -|-|+||..||..++....   .||.|...|.....
T Consensus        11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~---~CP~C~i~ih~t~p   65 (331)
T KOG2660|consen   11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESK---YCPTCDIVIHKTHP   65 (331)
T ss_pred             hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhc---cCCccceeccCccc
Confidence            345568999999999998655 7999999999999999865   99999998887653

>KOG0297|consensus

Probab=97.65  E-value=2.2e-05  Score=71.47  Aligned_cols=55  Identities=33%  Similarity=0.799  Sum_probs=47.6

Q ss_pred             CCCceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCcccccccccccCCcee
Q psy2200         130 KGQIYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIP  187 (248)
Q Consensus       130 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~  187 (248)
                      ...++.|++|...+.+|+.. .|||.||..|+..|+..+.   .||.|+..+......+
T Consensus        18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~---~cp~~~~~~~~~~~~~   73 (391)
T KOG0297|consen   18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQ---KCPVCRQELTQAEELP   73 (391)
T ss_pred             CcccccCccccccccCCCCCCCCCCcccccccchhhccCc---CCcccccccchhhccC
Confidence            45668999999999999995 9999999999999999866   9999998877655543

>PF04641 Rtf2: Rtf2 RING-finger

Probab=97.63  E-value=0.00011  Score=63.37  Aligned_cols=137  Identities=13%  Similarity=0.277  Sum_probs=80.4

Q ss_pred             CCCceeccccCCCCCCceE-eccCccc-ccceeccccCCCCC-CCCCCCCCCCCCCCCccccccchhhhhccccccCCCC
Q psy2200          31 KSQIYDCNICFDTAKDAVI-SMCGHLF-WLKFFYWPGRGGSE-IDPRDEVPPRPQGQRTERENSSVQSKVSNMATTSSGS  107 (248)
Q Consensus        31 ~~~~~~C~iCld~~~~~v~-~~CGH~f-~~cv~~~y~Rg~~~-~~p~~~~p~rp~~~~~e~~~~~~~~~~~~~~~~~~~~  107 (248)
                      ...-+.|++=++.|..||| ..-|++| -.-|+.|+-..... ..+.     ...+-+.-       +.+-++.-.....
T Consensus        31 ~~~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~~~~~~~~~-----~~~hI~~L-------KDl~~l~~~~n~~   98 (260)
T PF04641_consen   31 EARWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDKKKNKDLPK-----TFSHIKSL-------KDLVELKFTKNPS   98 (260)
T ss_pred             hCCcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhcCcCCCCcc-----ccccccCc-------cceeeEEeEecCc
Confidence            3455789999999999985 7899999 56677764332211 1110     00000000       0011110000000


Q ss_pred             CCCCCCCCCCCCCCCCCCCccCCCCceeecccccccCCc----EEccCCCccCHhHHHHHHHhCCCCCcccccccccccC
Q psy2200         108 KQTPPNRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDA----VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD  183 (248)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~  183 (248)
                        ....       .  ..........+.|||....|..-    ++.+|||+|+..++...- ..   ..||+|-.++...
T Consensus        99 --~~~~-------~--~~~~~~~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~---~~Cp~c~~~f~~~  163 (260)
T PF04641_consen   99 --YKEE-------D--KSSGDNSEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KS---KKCPVCGKPFTEE  163 (260)
T ss_pred             --cccc-------c--ccccccCCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-cc---ccccccCCccccC
Confidence              0000       0  01122335568999999888532    344999999999999884 22   2799999999999


Q ss_pred             CceeeecCCCC
Q psy2200         184 KVIPVYGRGGS  194 (248)
Q Consensus       184 ~~~~~~~~~~~  194 (248)
                      +++++......
T Consensus       164 DiI~Lnp~~ee  174 (260)
T PF04641_consen  164 DIIPLNPPEEE  174 (260)
T ss_pred             CEEEecCCccH
Confidence            99988766653

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.63  E-value=1.4e-05  Score=54.82  Aligned_cols=49  Identities=29%  Similarity=0.730  Sum_probs=24.5

Q ss_pred             ceeecccccccC-C---cEEc----cCCCccCHhHHHHHHHhCCC--------CCcccccccccc
Q psy2200         133 IYDCNICLDTAK-D---AVIS----MCGHLFCWPCLHQWLETCPN--------RQTCPVCKAAID  181 (248)
Q Consensus       133 ~~~C~IC~~~~~-~---p~~~----~CgH~fC~~Ci~~~~~~~~~--------~~~CP~Cr~~~~  181 (248)
                      ...|.||+.... +   |.+.    .|++.||..|+..|+....+        ...||.|+.+|.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            368999998765 2   2221    69999999999999975321        136999999875

>KOG1734|consensus

Probab=97.61  E-value=1.7e-05  Score=66.91  Aligned_cols=55  Identities=25%  Similarity=0.564  Sum_probs=42.7

Q ss_pred             ceeecccccccCC----------cEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceee
Q psy2200         133 IYDCNICLDTAKD----------AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPV  188 (248)
Q Consensus       133 ~~~C~IC~~~~~~----------p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~  188 (248)
                      +..|.||-..+..          -..|.|+|+|+..||.-|.--.. ..+||.|+..+.......|
T Consensus       224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGK-kqtCPYCKekVdl~rmfsn  288 (328)
T KOG1734|consen  224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGK-KQTCPYCKEKVDLKRMFSN  288 (328)
T ss_pred             cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecC-CCCCchHHHHhhHhhhccC
Confidence            3589999986653          35789999999999999987543 5699999998876555433

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=97.61  E-value=5.3e-05  Score=48.13  Aligned_cols=42  Identities=33%  Similarity=0.860  Sum_probs=33.6

Q ss_pred             eeccccc--ccCCcEEccCC-----CccCHhHHHHHHHhCCCCCcccccc
Q psy2200         135 DCNICLD--TAKDAVISMCG-----HLFCWPCLHQWLETCPNRQTCPVCK  177 (248)
Q Consensus       135 ~C~IC~~--~~~~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr  177 (248)
                      .|-||++  ...++.+.||.     |.++..|+.+|+.... ...||+|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~-~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESG-NKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcC-CCcCCCCC
Confidence            3889997  44567788985     8899999999998764 45899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG2879|consensus

Probab=97.60  E-value=6.8e-05  Score=63.51  Aligned_cols=50  Identities=22%  Similarity=0.629  Sum_probs=40.7

Q ss_pred             CCceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         131 GQIYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                      ....+|++|.+....|.+. +|||+||..||..-..... ..+||.|...+.
T Consensus       237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~a-sf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDA-SFTCPLCGENVE  287 (298)
T ss_pred             cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchh-hcccCccCCCCc
Confidence            3457999999999999766 6999999999998776542 458999987664

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=97.58  E-value=8.1e-06  Score=50.33  Aligned_cols=27  Identities=26%  Similarity=0.590  Sum_probs=15.3

Q ss_pred             ccccCCCCCC----ceEeccCccccc-ceeccc
Q psy2200          37 CNICFDTAKD----AVISMCGHLFWL-KFFYWP   64 (248)
Q Consensus        37 C~iCld~~~~----~v~~~CGH~f~~-cv~~~y   64 (248)
                      |+||++ +.+    |++++|||+|+. |+.++.
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~   32 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLS   32 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHH
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHH
Confidence            899999 888    999999999944 444443

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=1.6e-05  Score=67.05  Aligned_cols=31  Identities=26%  Similarity=0.626  Sum_probs=28.2

Q ss_pred             CCceeccccCCCCCCceEeccCccc-ccceec
Q psy2200          32 SQIYDCNICFDTAKDAVISMCGHLF-WLKFFY   62 (248)
Q Consensus        32 ~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~   62 (248)
                      ...|+|.||++...+|+-|+|||+| |.|++.
T Consensus       213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~  244 (271)
T COG5574         213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLI  244 (271)
T ss_pred             ccccceeeeecccCCcccccccchhhHHHHHH
Confidence            5689999999999999999999999 667777

>KOG0824|consensus

Probab=97.55  E-value=2.6e-05  Score=66.87  Aligned_cols=135  Identities=16%  Similarity=0.256  Sum_probs=73.8

Q ss_pred             eeccccCCCCCCceEeccCccc-ccceeccccCCCC-CCCCCCCCCCCCCCCCccccccchhhhhccccccCCCCCCCCC
Q psy2200          35 YDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGGS-EIDPRDEVPPRPQGQRTERENSSVQSKVSNMATTSSGSKQTPP  112 (248)
Q Consensus        35 ~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~~-~~~p~~~~p~rp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  112 (248)
                      =+|.||+..---||.+.|+|-| +.|+-..|+++.. ..-.+..++....-+....         -++.....+......
T Consensus         8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i~~~psl~---------~~LK~n~p~~~~~t~   78 (324)
T KOG0824|consen    8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTIDFEPSLK---------YRLKPNTPEVKRITR   78 (324)
T ss_pred             CcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcchhcchhhh---------hhhcCCCCCCCcccc
Confidence            4799999999999999999999 6666666766543 2222222222111110000         000000000000000


Q ss_pred             ------CCCCCCCCCCCCCCccCCCCceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         113 ------NRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       113 ------~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                            .......................|-||...+.-|... .|+|-||..|...|.....   .||.|+..+.
T Consensus        79 ~~~~rag~n~nqnvp~~~~dA~~~~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~---~~~d~~~~~~  151 (324)
T KOG0824|consen   79 SQAKRAGVNGNQNVPYMKEDAGFQQDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGN---DCPDCRGKIS  151 (324)
T ss_pred             cHHhhhhhhccCCcchhhhhccccCCccceeeeeeeEEecccccCceeeeeecCCchhhhhhh---ccchhhcCcC
Confidence                  0000000000011112233445788999988877666 5999999999999998766   8998887554

>KOG1813|consensus

Probab=97.53  E-value=3.1e-05  Score=66.20  Aligned_cols=46  Identities=28%  Similarity=0.646  Sum_probs=40.6

Q ss_pred             ceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         133 IYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       133 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                      .+.|-||..++.+||++.|||.||..|...-++...   .|.+|.+.+.
T Consensus       241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~---~c~vC~~~t~  286 (313)
T KOG1813|consen  241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGE---KCYVCSQQTH  286 (313)
T ss_pred             CccccccccccccchhhcCCceeehhhhccccccCC---cceecccccc
Confidence            367999999999999999999999999988777655   8999987764

>TIGR00599 rad18 DNA repair protein rad18

Probab=97.52  E-value=2.7e-05  Score=70.40  Aligned_cols=47  Identities=19%  Similarity=0.218  Sum_probs=35.2

Q ss_pred             CCCCCceeccccCCCCCCceEeccCccccc-ceeccccCCCCCCCCCCCC
Q psy2200          29 NDKSQIYDCNICFDTAKDAVISMCGHLFWL-KFFYWPGRGGSEIDPRDEV   77 (248)
Q Consensus        29 ~~~~~~~~C~iCld~~~~~v~~~CGH~f~~-cv~~~y~Rg~~~~~p~~~~   77 (248)
                      ..+...|.|+||++.+.+||+++|||.||. |+..|+...  ..||.+..
T Consensus        21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~--~~CP~Cr~   68 (397)
T TIGR00599        21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ--PKCPLCRA   68 (397)
T ss_pred             cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC--CCCCCCCC
Confidence            456678999999999999999999999965 555555432  34555433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0804|consensus

Probab=97.52  E-value=4.7e-05  Score=68.50  Aligned_cols=46  Identities=28%  Similarity=0.892  Sum_probs=38.5

Q ss_pred             CCceeecccccccCCcE----EccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         131 GQIYDCNICLDTAKDAV----ISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~p~----~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                      .+..+||||++.+...+    .+.|-|.|+..|+..|...     +||+||....
T Consensus       173 tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~-----scpvcR~~q~  222 (493)
T KOG0804|consen  173 TELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS-----SCPVCRYCQS  222 (493)
T ss_pred             ccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC-----cChhhhhhcC
Confidence            45569999999998653    4589999999999999976     8999997655

>KOG1645|consensus

Probab=97.51  E-value=2e-05  Score=70.11  Aligned_cols=60  Identities=35%  Similarity=0.793  Sum_probs=50.0

Q ss_pred             eeecccccccCCc-----EEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCC
Q psy2200         134 YDCNICLDTAKDA-----VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGS  194 (248)
Q Consensus       134 ~~C~IC~~~~~~p-----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~  194 (248)
                      ..|+||++.+.-+     +.+.|||.|-..||..|+.. .....||.|...-.++.+.+.|.++..
T Consensus         5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k-~~~~~cp~c~~katkr~i~~e~alR~q   69 (463)
T KOG1645|consen    5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGK-KTKMQCPLCSGKATKRQIRPEYALRVQ   69 (463)
T ss_pred             ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhh-hhhhhCcccCChhHHHHHHHHHHHHHH
Confidence            5899999988754     67799999999999999963 336799999998888888888876644

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=97.47  E-value=8.6e-05  Score=51.10  Aligned_cols=29  Identities=31%  Similarity=0.763  Sum_probs=26.9

Q ss_pred             cCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         150 MCGHLFCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       150 ~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                      .|.|.|+..||++||..++   .||++|+...
T Consensus        53 ~CnHaFH~HCI~rWL~Tk~---~CPld~q~w~   81 (88)
T COG5194          53 VCNHAFHDHCIYRWLDTKG---VCPLDRQTWV   81 (88)
T ss_pred             ecchHHHHHHHHHHHhhCC---CCCCCCceeE
Confidence            6999999999999999987   9999998865

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.34  E-value=6.9e-05  Score=51.76  Aligned_cols=43  Identities=23%  Similarity=0.379  Sum_probs=31.3

Q ss_pred             CCceeccccCCCCCCceEeccCccc-ccceeccccCCCCCCCCCC
Q psy2200          32 SQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGGSEIDPRD   75 (248)
Q Consensus        32 ~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~   75 (248)
                      .+.|.|+|+.++..|||++++||+| -.++..|+.+ ....||.+
T Consensus         2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~-~~~~~P~t   45 (73)
T PF04564_consen    2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQ-NGGTDPFT   45 (73)
T ss_dssp             SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCT-TSSB-TTT
T ss_pred             CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHc-CCCCCCCC
Confidence            3579999999999999999999999 5567777766 23455544

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG0825|consensus

Probab=97.27  E-value=4.8e-05  Score=72.57  Aligned_cols=56  Identities=29%  Similarity=0.628  Sum_probs=44.2

Q ss_pred             CceeecccccccCCcE---EccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeec
Q psy2200         132 QIYDCNICLDTAKDAV---ISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYG  190 (248)
Q Consensus       132 ~~~~C~IC~~~~~~p~---~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~  190 (248)
                      ..-.|++|+..+.+..   ..+|+|.||..||..|.+...   +||+||..+...++..-+.
T Consensus       122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aq---TCPiDR~EF~~v~V~eS~~  180 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQ---TCPVDRGEFGEVKVLESTG  180 (1134)
T ss_pred             hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcc---cCchhhhhhheeeeecccc
Confidence            3457999998776543   348999999999999999877   9999999988665544333

>KOG0828|consensus

Probab=97.23  E-value=0.00012  Score=66.57  Aligned_cols=49  Identities=33%  Similarity=0.918  Sum_probs=38.1

Q ss_pred             CCceeecccccccC-----------------CcEEccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         131 GQIYDCNICLDTAK-----------------DAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       131 ~~~~~C~IC~~~~~-----------------~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                      +....|+||+....                 +-+.+||-|+|+..|+.+|....  +..||+||.++.
T Consensus       569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~y--kl~CPvCR~pLP  634 (636)
T KOG0828|consen  569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTY--KLICPVCRCPLP  634 (636)
T ss_pred             hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhh--cccCCccCCCCC
Confidence            44568999998542                 12456999999999999999853  248999999875

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=97.23  E-value=0.00016  Score=46.40  Aligned_cols=48  Identities=25%  Similarity=0.545  Sum_probs=38.3

Q ss_pred             ceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCc
Q psy2200         133 IYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV  185 (248)
Q Consensus       133 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~  185 (248)
                      ...|-.|...-...++++|||+.|..|..-+-.+     .||+|..++...++
T Consensus         7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~rYn-----gCPfC~~~~~~~~~   54 (55)
T PF14447_consen    7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGERYN-----GCPFCGTPFEFDDP   54 (55)
T ss_pred             ceeEEEccccccccccccccceeeccccChhhcc-----CCCCCCCcccCCCC
Confidence            3567788888788899999999999997754433     79999999876543

>KOG4275|consensus

Probab=97.21  E-value=6.1e-05  Score=64.28  Aligned_cols=42  Identities=36%  Similarity=0.881  Sum_probs=36.0

Q ss_pred             ceeecccccccCCcEEccCCCc-cCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         133 IYDCNICLDTAKDAVISMCGHL-FCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       133 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                      ...|.||++...+-+.|+|||. -|..|-.+.       ..||+||+.|.
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm-------~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM-------NECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeehhhcccc-------ccCchHHHHHH
Confidence            5689999999999999999996 899996542       37999999875

>KOG1493|consensus

Probab=97.20  E-value=9.2e-05  Score=50.51  Aligned_cols=32  Identities=31%  Similarity=0.843  Sum_probs=28.6

Q ss_pred             cCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         150 MCGHLFCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       150 ~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                      .|.|.|+..||.+|+....+...||+||+...
T Consensus        50 ~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   50 YCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             HHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            69999999999999998776779999998765

>smart00184 RING Ring finger

Probab=97.18  E-value=0.00012  Score=43.06  Aligned_cols=29  Identities=38%  Similarity=0.799  Sum_probs=24.7

Q ss_pred             ccccCCCCCCceEeccCccc-ccceecccc
Q psy2200          37 CNICFDTAKDAVISMCGHLF-WLKFFYWPG   65 (248)
Q Consensus        37 C~iCld~~~~~v~~~CGH~f-~~cv~~~y~   65 (248)
                      |+||++...+++.++|||.| ..|+..|+.
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~   30 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLK   30 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHH
Confidence            89999999999999999999 556666654

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=97.17  E-value=0.0001  Score=46.89  Aligned_cols=32  Identities=34%  Similarity=0.575  Sum_probs=25.5

Q ss_pred             ceeccccCCCCCCceEeccCcc-c-ccceecccc
Q psy2200          34 IYDCNICFDTAKDAVISMCGHL-F-WLKFFYWPG   65 (248)
Q Consensus        34 ~~~C~iCld~~~~~v~~~CGH~-f-~~cv~~~y~   65 (248)
                      .+.|.||++...+++++||||. | ..|...|+.
T Consensus         2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~   35 (50)
T PF13920_consen    2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLK   35 (50)
T ss_dssp             HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH
T ss_pred             cCCCccCCccCCceEEeCCCChHHHHHHhHHhcc
Confidence            4689999999999999999999 7 556666643

...

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=97.16  E-value=8.1e-05  Score=46.04  Aligned_cols=31  Identities=32%  Similarity=0.716  Sum_probs=25.5

Q ss_pred             eccccCCCC---CCceEeccCccc-ccceeccccC
Q psy2200          36 DCNICFDTA---KDAVISMCGHLF-WLKFFYWPGR   66 (248)
Q Consensus        36 ~C~iCld~~---~~~v~~~CGH~f-~~cv~~~y~R   66 (248)
                      +|+||++.+   ..++.++|||.| ..|+..|+.+
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~   36 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR   36 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh
Confidence            699999887   467889999999 7788888654

...

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.12  E-value=0.00015  Score=70.69  Aligned_cols=50  Identities=28%  Similarity=0.769  Sum_probs=38.9

Q ss_pred             CCceeecccccccC--C---c--EEccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         131 GQIYDCNICLDTAK--D---A--VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       131 ~~~~~C~IC~~~~~--~---p--~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                      ...-+|+||...+.  +   |  ..-.|.|.||..|+.+|++... ..+||+||..+.
T Consensus      1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~-~s~CPlCRseit 1523 (1525)
T COG5219        1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSA-RSNCPLCRSEIT 1523 (1525)
T ss_pred             CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcC-CCCCCccccccc
Confidence            34568999998765  1   1  2235999999999999999865 669999997764

>KOG1002|consensus

Probab=97.08  E-value=0.00025  Score=65.15  Aligned_cols=57  Identities=33%  Similarity=0.771  Sum_probs=47.0

Q ss_pred             CCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCC--CCCcccccccccccCCc
Q psy2200         129 DKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCP--NRQTCPVCKAAIDKDKV  185 (248)
Q Consensus       129 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~--~~~~CP~Cr~~~~~~~~  185 (248)
                      .......|.+|.+...+++...|.|.||+-|+..++..-.  ...+||.|...+..+.-
T Consensus       532 enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDls  590 (791)
T KOG1002|consen  532 ENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLS  590 (791)
T ss_pred             cccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccccc
Confidence            3455679999999999999999999999999999887532  25799999988876543

>KOG1571|consensus

Probab=97.06  E-value=0.00034  Score=61.62  Aligned_cols=47  Identities=38%  Similarity=0.764  Sum_probs=37.2

Q ss_pred             CCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         129 DKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       129 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                      .......|.||++...+.+.++|||+-|  |..-..+.    ..||+||..|.
T Consensus       301 ~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~l----~~CPvCR~rI~  347 (355)
T KOG1571|consen  301 ELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKHL----PQCPVCRQRIR  347 (355)
T ss_pred             ccCCCCceEEecCCccceeeecCCcEEE--chHHHhhC----CCCchhHHHHH
Confidence            3445578999999999999999999976  66554443    36999999875

>KOG4692|consensus

Probab=97.02  E-value=0.0004  Score=60.86  Aligned_cols=48  Identities=31%  Similarity=0.713  Sum_probs=42.3

Q ss_pred             CceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200         132 QIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK  182 (248)
Q Consensus       132 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~  182 (248)
                      ++..|+||.....+.|+.||+|.-|..||.+.+-+..   .|-.|+..+..
T Consensus       421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k---~CFfCktTv~~  468 (489)
T KOG4692|consen  421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCK---RCFFCKTTVID  468 (489)
T ss_pred             ccccCcceecccchhhccCCCCchHHHHHHHHHhcCC---eeeEecceeee
Confidence            3458999999999999999999999999999988755   99999988764

>KOG2164|consensus

Probab=96.94  E-value=0.00018  Score=65.90  Aligned_cols=31  Identities=26%  Similarity=0.550  Sum_probs=27.3

Q ss_pred             ceeccccCCCCCCceEeccCccc-ccceeccc
Q psy2200          34 IYDCNICFDTAKDAVISMCGHLF-WLKFFYWP   64 (248)
Q Consensus        34 ~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y   64 (248)
                      ...|||||.-..-|+.|.|||+| |.|+++++
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~  217 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYW  217 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHH
Confidence            68899999999999999999999 66777643

>PHA02929 N1R/p28-like protein; Provisional

Probab=96.81  E-value=0.00043  Score=58.50  Aligned_cols=42  Identities=26%  Similarity=0.533  Sum_probs=30.3

Q ss_pred             CCceeccccCCCCCC--------ceEeccCccc-ccceeccccCCCCCCCCCC
Q psy2200          32 SQIYDCNICFDTAKD--------AVISMCGHLF-WLKFFYWPGRGGSEIDPRD   75 (248)
Q Consensus        32 ~~~~~C~iCld~~~~--------~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~   75 (248)
                      ....+|+||++.+.+        ++.++|||.| ..|+..|..+.  ..||..
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~--~tCPlC  222 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK--NTCPVC  222 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC--CCCCCC
Confidence            345799999998765        3677899999 45677787643  456654

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=96.77  E-value=0.00025  Score=60.56  Aligned_cols=54  Identities=17%  Similarity=0.170  Sum_probs=37.1

Q ss_pred             CCCCCCceeccccCCCCCCceEeccCcccccceeccccCCCCCCCCCCCCCCCCC
Q psy2200          28 GNDKSQIYDCNICFDTAKDAVISMCGHLFWLKFFYWPGRGGSEIDPRDEVPPRPQ   82 (248)
Q Consensus        28 ~~~~~~~~~C~iCld~~~~~v~~~CGH~f~~cv~~~y~Rg~~~~~p~~~~p~rp~   82 (248)
                      -..+..+..|-||-+.++.|+.|+|||.||.-+|+-|-+. ...+|.+.++++..
T Consensus        19 L~~LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~es   72 (391)
T COG5432          19 LKGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCES   72 (391)
T ss_pred             hhcchhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhh
Confidence            3456778999999999999999999999966555443222 24455554444333

>KOG2930|consensus

Probab=96.75  E-value=0.00072  Score=48.91  Aligned_cols=28  Identities=32%  Similarity=0.918  Sum_probs=25.5

Q ss_pred             cCCCccCHhHHHHHHHhCCCCCccccccccc
Q psy2200         150 MCGHLFCWPCLHQWLETCPNRQTCPVCKAAI  180 (248)
Q Consensus       150 ~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~  180 (248)
                      -|.|.|+..||.+|++++.   .||+|.+.-
T Consensus        80 ~CNHaFH~hCisrWlktr~---vCPLdn~eW  107 (114)
T KOG2930|consen   80 VCNHAFHFHCISRWLKTRN---VCPLDNKEW  107 (114)
T ss_pred             ecchHHHHHHHHHHHhhcC---cCCCcCcce
Confidence            5999999999999999988   999998764

>KOG0826|consensus

Probab=96.67  E-value=0.00063  Score=59.11  Aligned_cols=56  Identities=23%  Similarity=0.659  Sum_probs=46.5

Q ss_pred             CCceeecccccccCCcEEcc-CCCccCHhHHHHHHHhCCCCCcccccccccccCCceeee
Q psy2200         131 GQIYDCNICLDTAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY  189 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~  189 (248)
                      .+.-.|+||+..-.+|.++. -|-+||+.|+..++...+   .||+-..+..-.+++.+|
T Consensus       298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~---~CPVT~~p~~v~~l~rl~  354 (357)
T KOG0826|consen  298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYG---HCPVTGYPASVDHLIRLF  354 (357)
T ss_pred             CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcC---CCCccCCcchHHHHHHHh
Confidence            34458999999999997775 499999999999999877   999988887766666555

>KOG0287|consensus

Probab=96.66  E-value=0.00014  Score=63.30  Aligned_cols=53  Identities=19%  Similarity=0.224  Sum_probs=37.7

Q ss_pred             CCCCCceeccccCCCCCCceEeccCcccccceeccccCCCCCCCCCCCCCCCCC
Q psy2200          29 NDKSQIYDCNICFDTAKDAVISMCGHLFWLKFFYWPGRGGSEIDPRDEVPPRPQ   82 (248)
Q Consensus        29 ~~~~~~~~C~iCld~~~~~v~~~CGH~f~~cv~~~y~Rg~~~~~p~~~~p~rp~   82 (248)
                      ..+.+.+.|-||.|.|+.|++|||||+||.-+|+-|-+. ...||.+.++-+..
T Consensus        18 k~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es   70 (442)
T KOG0287|consen   18 KTLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTES   70 (442)
T ss_pred             hhhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchh
Confidence            455678999999999999999999999977555544333 24556554444333

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=96.60  E-value=0.0007  Score=41.09  Aligned_cols=31  Identities=29%  Similarity=0.811  Sum_probs=23.8

Q ss_pred             eccccCCCCCCceEec-cCccc-ccceeccccC
Q psy2200          36 DCNICFDTAKDAVISM-CGHLF-WLKFFYWPGR   66 (248)
Q Consensus        36 ~C~iCld~~~~~v~~~-CGH~f-~~cv~~~y~R   66 (248)
                      +|+||++.+.+++.++ |||.| ..|+..|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~   33 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS   33 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHh
Confidence            5999999997777766 99999 5566666543

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.52  E-value=0.0012  Score=56.82  Aligned_cols=55  Identities=25%  Similarity=0.606  Sum_probs=42.3

Q ss_pred             eeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCccccccc-ccccCCceeeec
Q psy2200         134 YDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKA-AIDKDKVIPVYG  190 (248)
Q Consensus       134 ~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~-~~~~~~~~~~~~  190 (248)
                      +.|+.|..++++|+.+ -|||.||.+||..-|-..  -..||.|.. .+..+.+.+-+.
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~ds--Df~CpnC~rkdvlld~l~pD~d  331 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDS--DFKCPNCSRKDVLLDGLTPDID  331 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhc--cccCCCcccccchhhccCccHH
Confidence            7899999999999999 589999999999765442  249999965 455555555443

>KOG4159|consensus

Probab=96.45  E-value=0.00073  Score=61.24  Aligned_cols=38  Identities=18%  Similarity=0.393  Sum_probs=31.5

Q ss_pred             CCCCCceeccccCCCCCCceEeccCccc-ccceeccccC
Q psy2200          29 NDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGR   66 (248)
Q Consensus        29 ~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~R   66 (248)
                      .+....|+|.||.+++..||+|+|||.| .+|+++..+.
T Consensus        79 ~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~  117 (398)
T KOG4159|consen   79 EEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ  117 (398)
T ss_pred             ccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc
Confidence            3447789999999999999999999999 4477776553

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.42  E-value=0.00078  Score=44.13  Aligned_cols=42  Identities=31%  Similarity=0.504  Sum_probs=25.0

Q ss_pred             CCceeccccCCCCCCceEe-ccCccc-ccceeccccCCCCCCCC
Q psy2200          32 SQIYDCNICFDTAKDAVIS-MCGHLF-WLKFFYWPGRGGSEIDP   73 (248)
Q Consensus        32 ~~~~~C~iCld~~~~~v~~-~CGH~f-~~cv~~~y~Rg~~~~~p   73 (248)
                      .-.+.|+|.+..+.+||.. .|||+| -..+..++.+.+...+|
T Consensus         9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CP   52 (57)
T PF11789_consen    9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCP   52 (57)
T ss_dssp             B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-S
T ss_pred             EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCC
Confidence            4579999999999999985 899999 33455566444444444

>KOG4628|consensus

Probab=96.33  E-value=0.0054  Score=54.49  Aligned_cols=42  Identities=21%  Similarity=0.339  Sum_probs=33.7

Q ss_pred             eeccccCCCCCC---ceEeccCccc-ccceeccccCCCCCCCCCCCC
Q psy2200          35 YDCNICFDTAKD---AVISMCGHLF-WLKFFYWPGRGGSEIDPRDEV   77 (248)
Q Consensus        35 ~~C~iCld~~~~---~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~~~   77 (248)
                      +.|.||||-+.+   .+++||.|.| ..|+-.|+.+. ...||.++.
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~  275 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKR  275 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCC
Confidence            899999999874   5779999999 88999998766 345665544

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=96.27  E-value=0.0012  Score=40.81  Aligned_cols=28  Identities=32%  Similarity=0.781  Sum_probs=21.5

Q ss_pred             eccccCCCC---CCceEeccCccccc-ceecc
Q psy2200          36 DCNICFDTA---KDAVISMCGHLFWL-KFFYW   63 (248)
Q Consensus        36 ~C~iCld~~---~~~v~~~CGH~f~~-cv~~~   63 (248)
                      +|+||.+.+   ..+++++|||+|+. |+...
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~   32 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKL   32 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhh
Confidence            599999887   46899999999954 44444

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=96.22  E-value=0.0059  Score=53.61  Aligned_cols=51  Identities=22%  Similarity=0.623  Sum_probs=39.9

Q ss_pred             CCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCccccccccc
Q psy2200         129 DKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAI  180 (248)
Q Consensus       129 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~  180 (248)
                      ..++...|.||.+.+.-..++||+|..|.-|..+.-.--. .+.|++||..-
T Consensus        57 tDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~-~K~C~~CrTE~  107 (493)
T COG5236          57 TDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYM-QKGCPLCRTET  107 (493)
T ss_pred             cccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHh-ccCCCcccccc
Confidence            3455678999999998889999999999999877543322 45899998753

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=96.19  E-value=0.0048  Score=48.43  Aligned_cols=53  Identities=25%  Similarity=0.592  Sum_probs=39.2

Q ss_pred             ceeecccccccCCcEEccC------------CCc-cCHhHHHHHHHhCC----------------------------CCC
Q psy2200         133 IYDCNICLDTAKDAVISMC------------GHL-FCWPCLHQWLETCP----------------------------NRQ  171 (248)
Q Consensus       133 ~~~C~IC~~~~~~p~~~~C------------gH~-fC~~Ci~~~~~~~~----------------------------~~~  171 (248)
                      +..|+||++...+.|+|-|            +-. -+..|++++.+...                            ...
T Consensus         2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L   81 (162)
T PF07800_consen    2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL   81 (162)
T ss_pred             CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence            3689999999999999976            211 34689998876532                            145


Q ss_pred             cccccccccccCCc
Q psy2200         172 TCPVCKAAIDKDKV  185 (248)
Q Consensus       172 ~CP~Cr~~~~~~~~  185 (248)
                      .||+||..|....+
T Consensus        82 ~CPLCRG~V~GWtv   95 (162)
T PF07800_consen   82 ACPLCRGEVKGWTV   95 (162)
T ss_pred             cCccccCceeceEE
Confidence            79999999876544

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG2177|consensus

Probab=96.17  E-value=0.00077  Score=58.08  Aligned_cols=47  Identities=21%  Similarity=0.357  Sum_probs=33.2

Q ss_pred             CCCCCceeccccCCCCCCceEeccCcccccceeccccCCCCCCCCCCC
Q psy2200          29 NDKSQIYDCNICFDTAKDAVISMCGHLFWLKFFYWPGRGGSEIDPRDE   76 (248)
Q Consensus        29 ~~~~~~~~C~iCld~~~~~v~~~CGH~f~~cv~~~y~Rg~~~~~p~~~   76 (248)
                      ......+.|+||++.+.+|++++|||+||.-++...+. ....+|...
T Consensus         8 ~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr   54 (386)
T KOG2177|consen    8 EVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCR   54 (386)
T ss_pred             hhccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccC
Confidence            34466899999999999999999999995544433222 334555444

>KOG4367|consensus

Probab=96.02  E-value=0.003  Score=56.96  Aligned_cols=38  Identities=24%  Similarity=0.605  Sum_probs=33.2

Q ss_pred             CCceeecccccccCCcEEccCCCccCHhHHHHHHHhCC
Q psy2200         131 GQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCP  168 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~  168 (248)
                      ++++.|+||...+++|++|+|||..|+-|....+-+.+
T Consensus         2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~tp   39 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILVQTP   39 (699)
T ss_pred             cccccCceehhhccCceEeecccHHHHHHHHhhcccCC
Confidence            35689999999999999999999999999988776543

>KOG1001|consensus

Probab=96.01  E-value=0.0016  Score=63.16  Aligned_cols=52  Identities=31%  Similarity=0.818  Sum_probs=44.7

Q ss_pred             eeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCcee
Q psy2200         134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIP  187 (248)
Q Consensus       134 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~  187 (248)
                      +.|.||.+ ...++++.|||.||..|+...+.... ...||.||..+...++..
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~-~~~~~~cr~~l~~~~l~s  506 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSE-NAPCPLCRNVLKEKKLLS  506 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhcccccc-CCCCcHHHHHHHHHHHhh
Confidence            79999999 78889999999999999999988765 348999999887766544

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=95.97  E-value=0.0059  Score=46.46  Aligned_cols=52  Identities=31%  Similarity=0.809  Sum_probs=44.4

Q ss_pred             CceeecccccccCCcEEcc----CCCccCHhHHHHHHHhCCCCCcccccccccccC
Q psy2200         132 QIYDCNICLDTAKDAVISM----CGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD  183 (248)
Q Consensus       132 ~~~~C~IC~~~~~~p~~~~----CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~  183 (248)
                      ..++|.||.+...+...|.    ||-..|.-|....|+...-...||+|+.++...
T Consensus        79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss  134 (140)
T PF05290_consen   79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS  134 (140)
T ss_pred             CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence            4589999999988887773    999999999999888766577999999988754

>KOG4739|consensus

Probab=95.85  E-value=0.0028  Score=53.12  Aligned_cols=47  Identities=34%  Similarity=0.858  Sum_probs=32.4

Q ss_pred             eeecccccccC-Cc-EEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCc
Q psy2200         134 YDCNICLDTAK-DA-VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV  185 (248)
Q Consensus       134 ~~C~IC~~~~~-~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~  185 (248)
                      +.|..|..... ++ .++.|+|+||..|...-..     ..||+|++.+....+
T Consensus         4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~-----~~C~lCkk~ir~i~l   52 (233)
T KOG4739|consen    4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP-----DVCPLCKKSIRIIQL   52 (233)
T ss_pred             EEeccccccCCCCceeeeechhhhhhhhcccCCc-----cccccccceeeeeec
Confidence            46777775443 33 4568999999999754222     289999998765444

>KOG1941|consensus

Probab=95.82  E-value=0.003  Score=56.22  Aligned_cols=47  Identities=26%  Similarity=0.612  Sum_probs=37.7

Q ss_pred             ceeecccccccC----CcEEccCCCccCHhHHHHHHHhCCCCCccccccccc
Q psy2200         133 IYDCNICLDTAK----DAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAI  180 (248)
Q Consensus       133 ~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~  180 (248)
                      .+.|..|-+.+-    .--.+||.|+|+..|+..++.++. .++||.||+-.
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~-~rsCP~Crklr  415 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNG-TRSCPNCRKLR  415 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCC-CCCCccHHHHH
Confidence            468999998654    224679999999999999998764 78999999543

>KOG0802|consensus

Probab=95.75  E-value=0.0079  Score=57.22  Aligned_cols=47  Identities=30%  Similarity=0.694  Sum_probs=36.0

Q ss_pred             CceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCc
Q psy2200         132 QIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV  185 (248)
Q Consensus       132 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~  185 (248)
                      ....|.||.+.. ...+.+|-   ...|+..|+..+.   .||+|+..+..++.
T Consensus       478 ~~~~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~~~---~~pl~~~~~~~~~~  524 (543)
T KOG0802|consen  478 PNDVCAICYQEM-SARITPCS---HALCLRKWLYVQE---VCPLCHTYMKEDDF  524 (543)
T ss_pred             ccCcchHHHHHH-Hhcccccc---chhHHHhhhhhcc---ccCCCchhhhcccc
Confidence            345799999988 55666777   5688888988776   89999988765543

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.75  E-value=0.0045  Score=38.87  Aligned_cols=43  Identities=30%  Similarity=0.728  Sum_probs=20.8

Q ss_pred             ecccccccC--CcEEc--cCCCccCHhHHHHHHHhCCCCCccccccccc
Q psy2200         136 CNICLDTAK--DAVIS--MCGHLFCWPCLHQWLETCPNRQTCPVCKAAI  180 (248)
Q Consensus       136 C~IC~~~~~--~p~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~  180 (248)
                      |++|.+.+.  +-.++  +||+.+|..|....++..  ...||-||.++
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~--~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENE--GGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS---SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhcc--CCCCCCCCCCC
Confidence            678888763  22333  689999999998888642  23999999875

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=95.68  E-value=0.0041  Score=41.34  Aligned_cols=29  Identities=34%  Similarity=0.817  Sum_probs=15.0

Q ss_pred             CceeccccCCCCCCceE-eccCccccccee
Q psy2200          33 QIYDCNICFDTAKDAVI-SMCGHLFWLKFF   61 (248)
Q Consensus        33 ~~~~C~iCld~~~~~v~-~~CGH~f~~cv~   61 (248)
                      ....|++|.+.+++||. +.|.|+||+-++
T Consensus         6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci   35 (65)
T PF14835_consen    6 ELLRCSICFDILKEPVCLGGCEHIFCSSCI   35 (65)
T ss_dssp             HTTS-SSS-S--SS-B---SSS--B-TTTG
T ss_pred             HhcCCcHHHHHhcCCceeccCccHHHHHHh
Confidence            35789999999999985 889999955444

>KOG4185|consensus

Probab=95.65  E-value=0.007  Score=52.98  Aligned_cols=45  Identities=29%  Similarity=0.744  Sum_probs=37.5

Q ss_pred             eeecccccccC------CcEEccCCCccCHhHHHHHHHhCCCCCccccccccc
Q psy2200         134 YDCNICLDTAK------DAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAI  180 (248)
Q Consensus       134 ~~C~IC~~~~~------~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~  180 (248)
                      +.|-||-+.+.      .|.+|.|||.||..|+...+...  ...||.||...
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~--~i~cpfcR~~~   54 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNS--RILCPFCRETT   54 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCc--eeeccCCCCcc
Confidence            57999998775      46888999999999999888763  46889999984

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.56  E-value=0.0048  Score=42.53  Aligned_cols=33  Identities=30%  Similarity=0.763  Sum_probs=25.4

Q ss_pred             eccccCCCCCCc-------------eEeccCccc-ccceeccccCCC
Q psy2200          36 DCNICFDTAKDA-------------VISMCGHLF-WLKFFYWPGRGG   68 (248)
Q Consensus        36 ~C~iCld~~~~~-------------v~~~CGH~f-~~cv~~~y~Rg~   68 (248)
                      .|.||++.+.++             +..+|||.| .-|+.+|+.+..
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~   67 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN   67 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC
Confidence            399999888332             456899999 788888986554

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG1814|consensus

Probab=95.38  E-value=0.0072  Score=54.23  Aligned_cols=47  Identities=28%  Similarity=0.709  Sum_probs=35.1

Q ss_pred             CCceeecccccccCC---cEEccCCCccCHhHHHHHHHhCC-----CCCcccccc
Q psy2200         131 GQIYDCNICLDTAKD---AVISMCGHLFCWPCLHQWLETCP-----NRQTCPVCK  177 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~Cr  177 (248)
                      ...+.|.||++...-   -+.+||+|+||+.|+..+....-     ...+||.+.
T Consensus       182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~  236 (445)
T KOG1814|consen  182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK  236 (445)
T ss_pred             hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence            356899999997653   36779999999999999976422     245677654

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.38  E-value=0.0048  Score=50.09  Aligned_cols=36  Identities=28%  Similarity=0.528  Sum_probs=30.7

Q ss_pred             ceeccccCCCCCCceEeccCcccc-cceeccccCCCC
Q psy2200          34 IYDCNICFDTAKDAVISMCGHLFW-LKFFYWPGRGGS   69 (248)
Q Consensus        34 ~~~C~iCld~~~~~v~~~CGH~f~-~cv~~~y~Rg~~   69 (248)
                      .|.|-||...+..||+|-|||.|| .|.+.-|..+..
T Consensus       196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~  232 (259)
T COG5152         196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDE  232 (259)
T ss_pred             ceeehhchhhccchhhhhcchhHHHHHHHHHhccCCc
Confidence            699999999999999999999994 477777766654

>KOG2817|consensus

Probab=95.35  E-value=0.013  Score=52.55  Aligned_cols=57  Identities=14%  Similarity=0.378  Sum_probs=43.1

Q ss_pred             CCCceeecccccccC---CcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCce
Q psy2200         130 KGQIYDCNICLDTAK---DAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVI  186 (248)
Q Consensus       130 ~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~  186 (248)
                      ....|.|||=.+.-.   .|+.+.|||+.+..-+.+..+...-..+||.|-......+..
T Consensus       331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~k  390 (394)
T KOG2817|consen  331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDTK  390 (394)
T ss_pred             ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhcc
Confidence            446789999776433   579999999999999999888744357999997665544443

>KOG1814|consensus

Probab=95.08  E-value=0.0076  Score=54.10  Aligned_cols=32  Identities=25%  Similarity=0.597  Sum_probs=24.9

Q ss_pred             CCCceeccccCCCCC---CceEeccCcccccceec
Q psy2200          31 KSQIYDCNICFDTAK---DAVISMCGHLFWLKFFY   62 (248)
Q Consensus        31 ~~~~~~C~iCld~~~---~~v~~~CGH~f~~cv~~   62 (248)
                      ....|+|.||.+...   .-+.+||+|.||.-+.+
T Consensus       181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~k  215 (445)
T KOG1814|consen  181 VNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLK  215 (445)
T ss_pred             HhhcccceeeehhhcCcceeeecccchHHHHHHHH
Confidence            456799999998854   46889999999664444

>KOG0804|consensus

Probab=94.96  E-value=0.0081  Score=54.46  Aligned_cols=31  Identities=19%  Similarity=0.652  Sum_probs=25.7

Q ss_pred             ceeccccCCCCCCc----eEeccCccc-ccceeccc
Q psy2200          34 IYDCNICFDTAKDA----VISMCGHLF-WLKFFYWP   64 (248)
Q Consensus        34 ~~~C~iCld~~~~~----v~~~CGH~f-~~cv~~~y   64 (248)
                      .=.|+|||+....-    +.+.|-|.| +.|+-+|.
T Consensus       175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~  210 (493)
T KOG0804|consen  175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW  210 (493)
T ss_pred             CCCcchhHhhcCccccceeeeecccccchHHHhhcc
Confidence            34799999887653    578999999 99999993

>PHA02926 zinc finger-like protein; Provisional

Probab=94.95  E-value=0.0056  Score=50.75  Aligned_cols=33  Identities=24%  Similarity=0.723  Sum_probs=25.2

Q ss_pred             CCceeccccCCCCCC---------ceEeccCccc-ccceeccc
Q psy2200          32 SQIYDCNICFDTAKD---------AVISMCGHLF-WLKFFYWP   64 (248)
Q Consensus        32 ~~~~~C~iCld~~~~---------~v~~~CGH~f-~~cv~~~y   64 (248)
                      ....+|.||+|...+         .+..+|+|.| +.|+..|.
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr  210 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWH  210 (242)
T ss_pred             cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHH
Confidence            445889999998643         4778999999 55777783

>KOG1813|consensus

Probab=94.81  E-value=0.016  Score=49.92  Aligned_cols=42  Identities=21%  Similarity=0.365  Sum_probs=33.2

Q ss_pred             CCCCCCceeccccCCCCCCceEeccCcccc-cceeccccCCCC
Q psy2200          28 GNDKSQIYDCNICFDTAKDAVISMCGHLFW-LKFFYWPGRGGS   69 (248)
Q Consensus        28 ~~~~~~~~~C~iCld~~~~~v~~~CGH~f~-~cv~~~y~Rg~~   69 (248)
                      .+.+.-.|.|-||...+.+||+|.|||.|| .|-+.-|.++..
T Consensus       235 ~D~~~~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~  277 (313)
T KOG1813|consen  235 EDIELLPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEK  277 (313)
T ss_pred             CCcccCCccccccccccccchhhcCCceeehhhhccccccCCc
Confidence            334455699999999999999999999994 466666776644

>PHA03096 p28-like protein; Provisional

Probab=94.47  E-value=0.019  Score=49.95  Aligned_cols=46  Identities=26%  Similarity=0.529  Sum_probs=34.3

Q ss_pred             eeecccccccCC--------cEEccCCCccCHhHHHHHHHhCCCCCcccccccc
Q psy2200         134 YDCNICLDTAKD--------AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAA  179 (248)
Q Consensus       134 ~~C~IC~~~~~~--------p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~  179 (248)
                      ..|.||++....        ..+..|-|.||..|+..|...+.....||.||.-
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~  232 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL  232 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence            479999986542        2344799999999999999876555566666653

>KOG3800|consensus

Probab=94.35  E-value=0.027  Score=48.40  Aligned_cols=49  Identities=27%  Similarity=0.726  Sum_probs=36.6

Q ss_pred             eeccccc-ccCCc----EEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCc
Q psy2200         135 DCNICLD-TAKDA----VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV  185 (248)
Q Consensus       135 ~C~IC~~-~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~  185 (248)
                      .|++|.. .+.+|    .+-+|||..|.+|+...+....  ..||.|...+....+
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~--~~CpeC~~iLRk~nf   55 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGP--AQCPECMVILRKNNF   55 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCC--CCCCcccchhhhccc
Confidence            5899986 34454    1228999999999999887643  599999887765544

>KOG3002|consensus

Probab=94.26  E-value=0.026  Score=49.50  Aligned_cols=47  Identities=26%  Similarity=0.655  Sum_probs=36.5

Q ss_pred             CCCCceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         129 DKGQIYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       129 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                      ...+.+.||||.+.+..|+.= .=||+.|..|-.+..   .   .||.||.++.
T Consensus        44 ~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~---~---~CP~Cr~~~g   91 (299)
T KOG3002|consen   44 LDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVS---N---KCPTCRLPIG   91 (299)
T ss_pred             cchhhccCchhhccCcccceecCCCcEehhhhhhhhc---c---cCCccccccc
Confidence            345668999999999887432 449999999976432   2   8999999887

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.00  E-value=0.064  Score=34.05  Aligned_cols=45  Identities=20%  Similarity=0.551  Sum_probs=22.4

Q ss_pred             eeecccccccCCcEEc-cCCCccCHhH--HHHHHHhCCCCCcccccccc
Q psy2200         134 YDCNICLDTAKDAVIS-MCGHLFCWPC--LHQWLETCPNRQTCPVCKAA  179 (248)
Q Consensus       134 ~~C~IC~~~~~~p~~~-~CgH~fC~~C--i~~~~~~~~~~~~CP~Cr~~  179 (248)
                      +.|+|....+..|+.. .|.|.-|.+=  ........ +...||+|.++
T Consensus         3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~-~~W~CPiC~~~   50 (50)
T PF02891_consen    3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRT-PKWKCPICNKP   50 (50)
T ss_dssp             SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS----B-TTT---
T ss_pred             eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhcc-CCeECcCCcCc
Confidence            6899999999999877 7999966443  22222323 25789999763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>KOG0978|consensus

Probab=93.81  E-value=0.012  Score=56.58  Aligned_cols=35  Identities=31%  Similarity=0.546  Sum_probs=29.1

Q ss_pred             CCCceeccccCCCCCCceEeccCccccc-ceecccc
Q psy2200          31 KSQIYDCNICFDTAKDAVISMCGHLFWL-KFFYWPG   65 (248)
Q Consensus        31 ~~~~~~C~iCld~~~~~v~~~CGH~f~~-cv~~~y~   65 (248)
                      .-....|++|.+..+|.|.+.|||.||. ||-..|.
T Consensus       640 yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~e  675 (698)
T KOG0978|consen  640 YKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYE  675 (698)
T ss_pred             HHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHH
Confidence            4456899999999999999999999954 6666665

>KOG1428|consensus

Probab=93.60  E-value=0.05  Score=55.98  Aligned_cols=52  Identities=31%  Similarity=0.583  Sum_probs=39.7

Q ss_pred             CCceeecccccccC---CcEEccCCCccCHhHHHHHHHhCC-------CCCccccccccccc
Q psy2200         131 GQIYDCNICLDTAK---DAVISMCGHLFCWPCLHQWLETCP-------NRQTCPVCKAAIDK  182 (248)
Q Consensus       131 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~-------~~~~CP~Cr~~~~~  182 (248)
                      ..+..|-||+...-   ..+.|.|+|+|+..|..+.++.+=       +-..||+|+.+|..
T Consensus      3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred             ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence            34568999996432   347889999999999999888652       24589999988763

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=93.54  E-value=0.091  Score=41.40  Aligned_cols=48  Identities=25%  Similarity=0.654  Sum_probs=36.6

Q ss_pred             ceeecccccccCCcEEccCCC-----ccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200         133 IYDCNICLDTAKDAVISMCGH-----LFCWPCLHQWLETCPNRQTCPVCKAAIDK  182 (248)
Q Consensus       133 ~~~C~IC~~~~~~p~~~~CgH-----~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~  182 (248)
                      ...|-||.+... +..-||..     ..|.+|+.+|+.... ...|++|+.++..
T Consensus         8 ~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~-~~~CeiC~~~Y~i   60 (162)
T PHA02825          8 DKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSK-NKSCKICNGPYNI   60 (162)
T ss_pred             CCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCC-CCcccccCCeEEE
Confidence            358999998764 33456654     359999999999764 6799999998753

>KOG2932|consensus

Probab=93.51  E-value=0.029  Score=48.64  Aligned_cols=45  Identities=22%  Similarity=0.685  Sum_probs=31.8

Q ss_pred             CceeecccccccC-CcEEccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         132 QIYDCNICLDTAK-DAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       132 ~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                      ....|.-|--.+. -..+++|.|+||.+|...  +.   .+.||.|-..|.
T Consensus        89 ~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~---dK~Cp~C~d~Vq  134 (389)
T KOG2932|consen   89 RVHFCDRCDFPIAIYGRMIPCKHVFCLECARS--DS---DKICPLCDDRVQ  134 (389)
T ss_pred             ceEeecccCCcceeeecccccchhhhhhhhhc--Cc---cccCcCcccHHH
Confidence            3567888865433 456789999999999753  22   348999976554

>PHA02862 5L protein; Provisional

Probab=93.48  E-value=0.054  Score=41.92  Aligned_cols=47  Identities=23%  Similarity=0.685  Sum_probs=36.4

Q ss_pred             eeecccccccCCcEEccCCC-----ccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200         134 YDCNICLDTAKDAVISMCGH-----LFCWPCLHQWLETCPNRQTCPVCKAAIDK  182 (248)
Q Consensus       134 ~~C~IC~~~~~~p~~~~CgH-----~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~  182 (248)
                      ..|-||++.-.+. .-||..     ..|+.|+.+|+.... ...|++|+.++..
T Consensus         3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~-k~~CeLCkteY~I   54 (156)
T PHA02862          3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSK-KKECNLCKTKYNI   54 (156)
T ss_pred             CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCC-CcCccCCCCeEEE
Confidence            3799999876544 457653     378999999997654 7799999998864

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=93.38  E-value=0.082  Score=32.42  Aligned_cols=40  Identities=18%  Similarity=0.589  Sum_probs=25.0

Q ss_pred             ecccccccCCcEEcc---CCCccCHhHHHHHHHhCCCCCccccc
Q psy2200         136 CNICLDTAKDAVISM---CGHLFCWPCLHQWLETCPNRQTCPVC  176 (248)
Q Consensus       136 C~IC~~~~~~p~~~~---CgH~fC~~Ci~~~~~~~~~~~~CP~C  176 (248)
                      |.+|.+.....+.-+   |+=.++..|+..+++... ...||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~-~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRS-NPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-S-S-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCC-CCCCcCC
Confidence            678888888777765   888899999999998765 2379987

; PDB: 3NW0_A 2CT0_A.

>KOG0311|consensus

Probab=93.37  E-value=0.004  Score=54.82  Aligned_cols=36  Identities=19%  Similarity=0.280  Sum_probs=28.5

Q ss_pred             CCCceeccccCCCCCCceEec-cCccc-ccceeccccC
Q psy2200          31 KSQIYDCNICFDTAKDAVISM-CGHLF-WLKFFYWPGR   66 (248)
Q Consensus        31 ~~~~~~C~iCld~~~~~v~~~-CGH~f-~~cv~~~y~R   66 (248)
                      ....|.|+|||++++....++ |+|-| +.|++..+..
T Consensus        40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~   77 (381)
T KOG0311|consen   40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS   77 (381)
T ss_pred             hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Confidence            345699999999999998887 99999 5566665443

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=93.35  E-value=0.055  Score=47.57  Aligned_cols=51  Identities=24%  Similarity=0.604  Sum_probs=37.3

Q ss_pred             eeecccccccC--CcEEc--cCCCccCHhHHHHHHHhCCCCCcccccccccccCCce
Q psy2200         134 YDCNICLDTAK--DAVIS--MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVI  186 (248)
Q Consensus       134 ~~C~IC~~~~~--~p~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~  186 (248)
                      ..|+.|++.+.  +.-..  +||-..|+-|.....+.-.  .+||.||..+..+.+.
T Consensus        15 d~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~ln--grcpacrr~y~denv~   69 (480)
T COG5175          15 DYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLN--GRCPACRRKYDDENVR   69 (480)
T ss_pred             ccCcccccccccccCCcccCCcccHHHHHHHHHHHhhcc--CCChHhhhhcccccee
Confidence            35999999765  33333  6888889999776655432  3899999999887764

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=93.34  E-value=0.026  Score=41.40  Aligned_cols=31  Identities=23%  Similarity=0.720  Sum_probs=24.9

Q ss_pred             CCceeecccccccCCc--EEccCCCccCHhHHH
Q psy2200         131 GQIYDCNICLDTAKDA--VISMCGHLFCWPCLH  161 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~p--~~~~CgH~fC~~Ci~  161 (248)
                      .....|++|...+.+.  ++.||||+||..|+.
T Consensus        76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence            3345799999988866  445999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=93.34  E-value=0.038  Score=48.41  Aligned_cols=48  Identities=23%  Similarity=0.328  Sum_probs=29.0

Q ss_pred             ceeccccCCCCC-Cc----eEeccCcccccceeccccCCCCCCCCCCCCCCCC
Q psy2200          34 IYDCNICFDTAK-DA----VISMCGHLFWLKFFYWPGRGGSEIDPRDEVPPRP   81 (248)
Q Consensus        34 ~~~C~iCld~~~-~~----v~~~CGH~f~~cv~~~y~Rg~~~~~p~~~~p~rp   81 (248)
                      ...||||+...+ .|    .+.+|||.||.-|+..+...+...||.+..+-+.
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk   55 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRK   55 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccch
Confidence            368999997422 22    2338999997655443333345678876544444

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=93.16  E-value=0.063  Score=33.61  Aligned_cols=40  Identities=30%  Similarity=0.918  Sum_probs=25.6

Q ss_pred             ecccccccC--CcEEccCCC-----ccCHhHHHHHHHhCCCCCccccc
Q psy2200         136 CNICLDTAK--DAVISMCGH-----LFCWPCLHQWLETCPNRQTCPVC  176 (248)
Q Consensus       136 C~IC~~~~~--~p~~~~CgH-----~fC~~Ci~~~~~~~~~~~~CP~C  176 (248)
                      |-||++...  ++.+.||+-     ..|..|+.+|+.... ...|++|
T Consensus         1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~-~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESG-NRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT--SB-TTT
T ss_pred             CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcC-CCcCCCC
Confidence            668887644  256778753     368999999999753 5578887

>KOG3113|consensus

Probab=93.04  E-value=0.16  Score=43.01  Aligned_cols=59  Identities=24%  Similarity=0.456  Sum_probs=44.7

Q ss_pred             cCCCCceeecccccccCCc----EEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecC
Q psy2200         128 NDKGQIYDCNICLDTAKDA----VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGR  191 (248)
Q Consensus       128 ~~~~~~~~C~IC~~~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~  191 (248)
                      +.....+.|||-.-.|...    ++..|||+|-..-+.+.-..     .|++|.+.+..++++.+-..
T Consensus       106 D~~~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeikas-----~C~~C~a~y~~~dvIvlNg~  168 (293)
T KOG3113|consen  106 DTQRARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKAS-----VCHVCGAAYQEDDVIVLNGT  168 (293)
T ss_pred             ccccceeecccccceecceEEEEEEeccceeccHHHHHHhhhc-----cccccCCcccccCeEeeCCC
Confidence            3345668999876555433    55599999999998876643     89999999999998876543

>KOG3161|consensus

Probab=92.96  E-value=0.032  Score=52.84  Aligned_cols=38  Identities=32%  Similarity=0.818  Sum_probs=31.1

Q ss_pred             CceeecccccccC----CcEEccCCCccCHhHHHHHHHhCCCCCccc
Q psy2200         132 QIYDCNICLDTAK----DAVISMCGHLFCWPCLHQWLETCPNRQTCP  174 (248)
Q Consensus       132 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP  174 (248)
                      ..+.|+||+..+.    .|+.+-|||+.|..|+......     +||
T Consensus        10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~-----scp   51 (861)
T KOG3161|consen   10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA-----SCP   51 (861)
T ss_pred             HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc-----cCC
Confidence            3468999987664    6889999999999999876654     788

>KOG1100|consensus

Probab=92.92  E-value=0.055  Score=45.00  Aligned_cols=39  Identities=26%  Similarity=0.760  Sum_probs=32.0

Q ss_pred             ecccccccCCcEEccCCCc-cCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         136 CNICLDTAKDAVISMCGHL-FCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       136 C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                      |-.|.+.-...+.+||.|. +|..|-..       ...||+|+....
T Consensus       161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~-------~~~CPiC~~~~~  200 (207)
T KOG1100|consen  161 CRKCGEREATVLLLPCRHLCLCGICDES-------LRICPICRSPKT  200 (207)
T ss_pred             ceecCcCCceEEeecccceEeccccccc-------CccCCCCcChhh
Confidence            9999998888788899997 99999543       347999987654

>KOG1952|consensus

Probab=92.77  E-value=0.072  Score=52.05  Aligned_cols=50  Identities=26%  Similarity=0.773  Sum_probs=37.9

Q ss_pred             CceeecccccccCCc-EEc---cCCCccCHhHHHHHHHhCC----CCCcccccccccc
Q psy2200         132 QIYDCNICLDTAKDA-VIS---MCGHLFCWPCLHQWLETCP----NRQTCPVCKAAID  181 (248)
Q Consensus       132 ~~~~C~IC~~~~~~p-~~~---~CgH~fC~~Ci~~~~~~~~----~~~~CP~Cr~~~~  181 (248)
                      +.++|-||.+.+... -+.   .|-|+|+..||..|.+...    ..+.||.|+....
T Consensus       190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~  247 (950)
T KOG1952|consen  190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK  247 (950)
T ss_pred             CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence            568999999987633 122   5889999999999987632    3679999985544

>KOG3970|consensus

Probab=92.75  E-value=0.085  Score=43.82  Aligned_cols=48  Identities=31%  Similarity=0.758  Sum_probs=38.1

Q ss_pred             eeecccccccC--CcEEccCCCccCHhHHHHHHHhCC-----CCCcccccccccc
Q psy2200         134 YDCNICLDTAK--DAVISMCGHLFCWPCLHQWLETCP-----NRQTCPVCKAAID  181 (248)
Q Consensus       134 ~~C~IC~~~~~--~p~~~~CgH~fC~~Ci~~~~~~~~-----~~~~CP~Cr~~~~  181 (248)
                      ..|..|...+.  +.+.|-|-|+|++.|+..|...-+     ....||.|...|-
T Consensus        51 pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF  105 (299)
T KOG3970|consen   51 PNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF  105 (299)
T ss_pred             CCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence            36888988776  457889999999999999986532     2468999988764

>KOG4362|consensus

Probab=92.60  E-value=0.025  Score=54.35  Aligned_cols=54  Identities=31%  Similarity=0.782  Sum_probs=44.8

Q ss_pred             CceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCc
Q psy2200         132 QIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV  185 (248)
Q Consensus       132 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~  185 (248)
                      ..++|+||...+.+|+.+.|-|.||..|+...+....+...||+|+..+.....
T Consensus        20 k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~   73 (684)
T KOG4362|consen   20 KILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSL   73 (684)
T ss_pred             hhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhc
Confidence            457899999999999999999999999998877765556799999976654433

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=92.26  E-value=0.085  Score=47.32  Aligned_cols=36  Identities=25%  Similarity=0.800  Sum_probs=29.0

Q ss_pred             CCCccCHhHHHHHHHhCC----------CCCcccccccccccCCce
Q psy2200         151 CGHLFCWPCLHQWLETCP----------NRQTCPVCKAAIDKDKVI  186 (248)
Q Consensus       151 CgH~fC~~Ci~~~~~~~~----------~~~~CP~Cr~~~~~~~~~  186 (248)
                      |.-+.|.+|+.+|+..++          ++..||.||+.+.-.|+.
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV~  356 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDVC  356 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeeee
Confidence            555679999999998765          367999999999877653

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG0298|consensus

Probab=92.01  E-value=0.045  Score=55.68  Aligned_cols=49  Identities=35%  Similarity=0.813  Sum_probs=42.0

Q ss_pred             ccCCCCceeecccccccC-CcEEccCCCccCHhHHHHHHHhCCCCCccccccc
Q psy2200         127 ENDKGQIYDCNICLDTAK-DAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKA  178 (248)
Q Consensus       127 ~~~~~~~~~C~IC~~~~~-~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~  178 (248)
                      .........|.||++.+. ...+..|||.+|..|...|+..+.   .||.|+.
T Consensus      1147 ~~~~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s---~~~~~ks 1196 (1394)
T KOG0298|consen 1147 LMNLSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASS---RCPICKS 1196 (1394)
T ss_pred             HHHhhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhc---cCcchhh
Confidence            334455679999999998 668889999999999999999977   9999974

>KOG1940|consensus

Probab=91.90  E-value=0.078  Score=45.78  Aligned_cols=42  Identities=31%  Similarity=0.764  Sum_probs=35.3

Q ss_pred             eeecccccccC----CcEEccCCCccCHhHHHHHHHhCCCCCccccccc
Q psy2200         134 YDCNICLDTAK----DAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKA  178 (248)
Q Consensus       134 ~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~  178 (248)
                      ..||||.+.+.    .+..++|||..+..|+......+-   +||+|.+
T Consensus       159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y---~CP~C~~  204 (276)
T KOG1940|consen  159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGY---TCPICSK  204 (276)
T ss_pred             CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCC---CCCcccc
Confidence            45999998664    567789999999999999887754   9999988

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.81  E-value=0.058  Score=33.52  Aligned_cols=44  Identities=27%  Similarity=0.810  Sum_probs=25.2

Q ss_pred             eeecccccccCCcEEccCC-CccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200         134 YDCNICLDTAKDAVISMCG-HLFCWPCLHQWLETCPNRQTCPVCKAAIDK  182 (248)
Q Consensus       134 ~~C~IC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~  182 (248)
                      +.|--|.  |.+.-.+.|. |..|..|+...+....   .||+|..++..
T Consensus         3 ~nCKsCW--f~~k~Li~C~dHYLCl~CLt~ml~~s~---~C~iC~~~LPt   47 (50)
T PF03854_consen    3 YNCKSCW--FANKGLIKCSDHYLCLNCLTLMLSRSD---RCPICGKPLPT   47 (50)
T ss_dssp             ----SS---S--SSEEE-SS-EEEHHHHHHT-SSSS---EETTTTEE---
T ss_pred             ccChhhh--hcCCCeeeecchhHHHHHHHHHhcccc---CCCcccCcCcc
Confidence            3455555  3344566776 8899999999998766   99999988754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG2114|consensus

Probab=91.66  E-value=0.085  Score=51.58  Aligned_cols=41  Identities=29%  Similarity=0.742  Sum_probs=33.4

Q ss_pred             ceeecccccccCCc-EEccCCCccCHhHHHHHHHhCCCCCcccccccc
Q psy2200         133 IYDCNICLDTAKDA-VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAA  179 (248)
Q Consensus       133 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~  179 (248)
                      ...|..|...+.-| |...|||.||+.|+.   +   +...||.|+..
T Consensus       840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~---~~~~CP~C~~e  881 (933)
T KOG2114|consen  840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE---D---KEDKCPKCLPE  881 (933)
T ss_pred             eeeecccCCccccceeeeecccHHHHHhhc---c---CcccCCccchh
Confidence            35899999999888 456999999999987   2   24589999873

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=91.64  E-value=0.082  Score=40.54  Aligned_cols=34  Identities=29%  Similarity=0.800  Sum_probs=27.0

Q ss_pred             ceeecccccccCC--c-EEccCC------CccCHhHHHHHHHh
Q psy2200         133 IYDCNICLDTAKD--A-VISMCG------HLFCWPCLHQWLET  166 (248)
Q Consensus       133 ~~~C~IC~~~~~~--p-~~~~Cg------H~fC~~Ci~~~~~~  166 (248)
                      ..+|.||++...+  . |.++||      |+||..|+.+|-+.
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~   68 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE   68 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence            5799999998876  4 445775      77999999999544

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG3039|consensus

Probab=91.37  E-value=0.14  Score=43.21  Aligned_cols=37  Identities=22%  Similarity=0.368  Sum_probs=32.1

Q ss_pred             CCCceeecccccccCCcEEccCCCccCHhHHHHHHHh
Q psy2200         130 KGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLET  166 (248)
Q Consensus       130 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~  166 (248)
                      +.....|..|++...+||+.+=||+||++||..++-.
T Consensus        40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila   76 (303)
T KOG3039|consen   40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA   76 (303)
T ss_pred             cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence            4444578999999999999999999999999998754

>KOG4445|consensus

Probab=91.28  E-value=0.06  Score=46.57  Aligned_cols=50  Identities=30%  Similarity=0.756  Sum_probs=37.3

Q ss_pred             ceeecccccccCCc---EEccCCCccCHhHHHHHHHhCC--------------------CCCccccccccccc
Q psy2200         133 IYDCNICLDTAKDA---VISMCGHLFCWPCLHQWLETCP--------------------NRQTCPVCKAAIDK  182 (248)
Q Consensus       133 ~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~--------------------~~~~CP~Cr~~~~~  182 (248)
                      ...|.||+--|.+.   .+++|-|.|+..|+.+++..-.                    -...||+||..|..
T Consensus       115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~  187 (368)
T KOG4445|consen  115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI  187 (368)
T ss_pred             CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence            45799998776543   5669999999999998874311                    13469999998864

>KOG1571|consensus

Probab=90.54  E-value=0.18  Score=44.81  Aligned_cols=29  Identities=34%  Similarity=0.651  Sum_probs=24.8

Q ss_pred             CCCCCceeccccCCCCCCceEeccCcccc
Q psy2200          29 NDKSQIYDCNICFDTAKDAVISMCGHLFW   57 (248)
Q Consensus        29 ~~~~~~~~C~iCld~~~~~v~~~CGH~f~   57 (248)
                      .+....-.|.||+|-.++.++.||||+.|
T Consensus       300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~cc  328 (355)
T KOG1571|consen  300 RELPQPDLCVVCLDEPKSAVFVPCGHVCC  328 (355)
T ss_pred             cccCCCCceEEecCCccceeeecCCcEEE
Confidence            34455678999999999999999999985

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.31  E-value=0.1  Score=45.26  Aligned_cols=39  Identities=21%  Similarity=0.280  Sum_probs=29.5

Q ss_pred             eeccccCCCCCC---ceEeccCccc-ccceeccccCCCCCCCCC
Q psy2200          35 YDCNICFDTAKD---AVISMCGHLF-WLKFFYWPGRGGSEIDPR   74 (248)
Q Consensus        35 ~~C~iCld~~~~---~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~   74 (248)
                      .+|.||+.-+.+   -+++||-|.| -.|+-+|....+ .+||.
T Consensus       324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~-~~CPv  366 (374)
T COG5540         324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYS-NKCPV  366 (374)
T ss_pred             ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhc-ccCCc
Confidence            799999976543   5889999999 788999966442 34444

>KOG4275|consensus

Probab=89.33  E-value=0.14  Score=44.12  Aligned_cols=23  Identities=39%  Similarity=0.882  Sum_probs=22.0

Q ss_pred             ceeccccCCCCCCceEeccCccc
Q psy2200          34 IYDCNICFDTAKDAVISMCGHLF   56 (248)
Q Consensus        34 ~~~C~iCld~~~~~v~~~CGH~f   56 (248)
                      ...|.||.|...|-|+++|||+.
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmV  322 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMV  322 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEE
Confidence            68899999999999999999988

>KOG1815|consensus

Probab=89.21  E-value=0.071  Score=49.50  Aligned_cols=33  Identities=21%  Similarity=0.366  Sum_probs=25.1

Q ss_pred             CCceeccccCCCCCC-ceEeccCcccccceeccc
Q psy2200          32 SQIYDCNICFDTAKD-AVISMCGHLFWLKFFYWP   64 (248)
Q Consensus        32 ~~~~~C~iCld~~~~-~v~~~CGH~f~~cv~~~y   64 (248)
                      ...++|-||.+.... .+...|||-|+.-+..+|
T Consensus        68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~y  101 (444)
T KOG1815|consen   68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGY  101 (444)
T ss_pred             CccccCCcccCCCcchhhhcCCCcHHHHHHHHHH
Confidence            456999999988874 788899999955444443

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=89.03  E-value=0.28  Score=42.86  Aligned_cols=57  Identities=16%  Similarity=0.356  Sum_probs=42.8

Q ss_pred             CCCCceeecccccccC---CcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCc
Q psy2200         129 DKGQIYDCNICLDTAK---DAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV  185 (248)
Q Consensus       129 ~~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~  185 (248)
                      .....+.||+=.+.-.   .|+++.|||+.-..-+....+...-...||.|-..-...++
T Consensus       332 hfHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~~  391 (396)
T COG5109         332 HFHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYENI  391 (396)
T ss_pred             cccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhhh
Confidence            3456789998766443   57999999999999999988875557899999655444333

>KOG3899|consensus

Probab=88.64  E-value=0.22  Score=42.95  Aligned_cols=37  Identities=27%  Similarity=0.589  Sum_probs=29.7

Q ss_pred             CCCccCHhHHHHHHHhCC----------CCCcccccccccccCCcee
Q psy2200         151 CGHLFCWPCLHQWLETCP----------NRQTCPVCKAAIDKDKVIP  187 (248)
Q Consensus       151 CgH~fC~~Ci~~~~~~~~----------~~~~CP~Cr~~~~~~~~~~  187 (248)
                      |....|.+|+.+|+..+.          +...||.||+.+...++.-
T Consensus       325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~~  371 (381)
T KOG3899|consen  325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVHC  371 (381)
T ss_pred             cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeeeE
Confidence            566789999999987654          3679999999998777643

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=88.46  E-value=0.41  Score=42.79  Aligned_cols=44  Identities=25%  Similarity=0.454  Sum_probs=31.4

Q ss_pred             CceeccccCCC-CC------------CceEeccCccc-ccceeccccCCCCCCCCCCCCC
Q psy2200          33 QIYDCNICFDT-AK------------DAVISMCGHLF-WLKFFYWPGRGGSEIDPRDEVP   78 (248)
Q Consensus        33 ~~~~C~iCld~-~~------------~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~~~p   78 (248)
                      +.=-|.||.|- ++            .|--+||||++ ..|+-.|..|.  +.||.+..|
T Consensus       286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq--QTCPICr~p  343 (491)
T COG5243         286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ--QTCPICRRP  343 (491)
T ss_pred             CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc--cCCCcccCc
Confidence            34569999986 33            24689999999 77888898875  556654443

>KOG3268|consensus

Probab=88.36  E-value=0.31  Score=39.09  Aligned_cols=34  Identities=32%  Similarity=0.702  Sum_probs=26.1

Q ss_pred             ccCCCccCHhHHHHHHHhCCC--------CCccccccccccc
Q psy2200         149 SMCGHLFCWPCLHQWLETCPN--------RQTCPVCKAAIDK  182 (248)
Q Consensus       149 ~~CgH~fC~~Ci~~~~~~~~~--------~~~CP~Cr~~~~~  182 (248)
                      ..||..|+.-|+..|++.-..        -..||.|..++..
T Consensus       188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial  229 (234)
T KOG3268|consen  188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL  229 (234)
T ss_pred             cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence            369999999999999975210        2379999888753

>KOG3579|consensus

Probab=87.64  E-value=0.27  Score=42.27  Aligned_cols=37  Identities=24%  Similarity=0.695  Sum_probs=32.4

Q ss_pred             CceeecccccccCCcEEccC----CCccCHhHHHHHHHhCC
Q psy2200         132 QIYDCNICLDTAKDAVISMC----GHLFCWPCLHQWLETCP  168 (248)
Q Consensus       132 ~~~~C~IC~~~~~~p~~~~C----gH~fC~~Ci~~~~~~~~  168 (248)
                      ..+.|.+|.+.+.+.....|    .|.||+.|-...++...
T Consensus       267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg  307 (352)
T KOG3579|consen  267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQG  307 (352)
T ss_pred             CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhc
Confidence            34899999999999988888    79999999999988754

>KOG4367|consensus

Probab=87.36  E-value=0.23  Score=45.15  Aligned_cols=27  Identities=19%  Similarity=0.467  Sum_probs=24.0

Q ss_pred             CceeccccCCCCCCceEeccCcccccc
Q psy2200          33 QIYDCNICFDTAKDAVISMCGHLFWLK   59 (248)
Q Consensus        33 ~~~~C~iCld~~~~~v~~~CGH~f~~c   59 (248)
                      ..++|+||...+++|++++|||..|.-
T Consensus         3 eelkc~vc~~f~~epiil~c~h~lc~~   29 (699)
T KOG4367|consen    3 EELKCPVCGSFYREPIILPCSHNLCQA   29 (699)
T ss_pred             ccccCceehhhccCceEeecccHHHHH
Confidence            357999999999999999999999553

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=86.84  E-value=0.18  Score=42.37  Aligned_cols=50  Identities=24%  Similarity=0.568  Sum_probs=36.2

Q ss_pred             eeeccccc-ccCCc-E-Ec--c-CCCccCHhHHHHHHHhCCCCCccc--ccccccccCCc
Q psy2200         134 YDCNICLD-TAKDA-V-IS--M-CGHLFCWPCLHQWLETCPNRQTCP--VCKAAIDKDKV  185 (248)
Q Consensus       134 ~~C~IC~~-~~~~p-~-~~--~-CgH~fC~~Ci~~~~~~~~~~~~CP--~Cr~~~~~~~~  185 (248)
                      -.||||.. .+-+| + ++  | |-|..|.+|+.+.+...  ...||  -|.+.+.....
T Consensus        11 ~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~G--pAqCP~~gC~kILRK~kf   68 (314)
T COG5220          11 RRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRG--PAQCPYKGCGKILRKIKF   68 (314)
T ss_pred             ccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCC--CCCCCCccHHHHHHHhcc
Confidence            48999996 34444 2 22  4 99999999999998764  46899  78776654443

>KOG4172|consensus

Probab=86.82  E-value=0.068  Score=34.25  Aligned_cols=40  Identities=23%  Similarity=0.495  Sum_probs=28.6

Q ss_pred             ceeccccCCCCCCceEeccCccc--ccceeccccCCCCCCCCC
Q psy2200          34 IYDCNICFDTAKDAVISMCGHLF--WLKFFYWPGRGGSEIDPR   74 (248)
Q Consensus        34 ~~~C~iCld~~~~~v~~~CGH~f--~~cv~~~y~Rg~~~~~p~   74 (248)
                      +-+|.||.|-.-|.|.-.|||+.  +.|-+.. +++....+|.
T Consensus         7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl-~~~~~g~CPi   48 (62)
T KOG4172|consen    7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRL-KKALHGCCPI   48 (62)
T ss_pred             ccceeeeccCcchHHHHHcchHHhHHHHHHHH-HHccCCcCcc
Confidence            36899999999999999999998  5554443 2323344554

>KOG1645|consensus

Probab=84.70  E-value=0.23  Score=44.84  Aligned_cols=39  Identities=33%  Similarity=0.596  Sum_probs=29.2

Q ss_pred             eccccCCCCCC-----ceEeccCccc-ccceeccccCCCCCCCCC
Q psy2200          36 DCNICFDTAKD-----AVISMCGHLF-WLKFFYWPGRGGSEIDPR   74 (248)
Q Consensus        36 ~C~iCld~~~~-----~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~   74 (248)
                      .|+||||-..-     .|...|||.| -.|+-.|+++.....+|.
T Consensus         6 tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~   50 (463)
T KOG1645|consen    6 TCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPL   50 (463)
T ss_pred             cCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcc
Confidence            69999998654     4678899999 778888886443355554

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=83.21  E-value=0.65  Score=32.84  Aligned_cols=39  Identities=23%  Similarity=0.353  Sum_probs=25.9

Q ss_pred             ccccCCCCCC--ceEeccCccc-ccceeccccCC-CCCCCCCC
Q psy2200          37 CNICFDTAKD--AVISMCGHLF-WLKFFYWPGRG-GSEIDPRD   75 (248)
Q Consensus        37 C~iCld~~~~--~v~~~CGH~f-~~cv~~~y~Rg-~~~~~p~~   75 (248)
                      |+.|.-.-.+  .|...|+|.| .-|+.+|+... +...+|..
T Consensus        35 Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmC   77 (85)
T PF12861_consen   35 CPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMC   77 (85)
T ss_pred             CCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCc
Confidence            6666544333  3567899999 88999998754 23555543

>KOG4265|consensus

Probab=82.17  E-value=0.62  Score=41.42  Aligned_cols=49  Identities=20%  Similarity=0.264  Sum_probs=32.9

Q ss_pred             CCCCceeccccCCCCCCceEeccCccc-ccceeccccCCCCCCCCCCCCCC
Q psy2200          30 DKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGGSEIDPRDEVPP   79 (248)
Q Consensus        30 ~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~~~p~   79 (248)
                      +.+..-+|-||++-.+|.+++||=|+. |.-+.+.+. .....||.+..+.
T Consensus       286 ~~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr-~q~n~CPICRqpi  335 (349)
T KOG4265|consen  286 ESESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLR-YQTNNCPICRQPI  335 (349)
T ss_pred             cccCCCeeEEEecCCcceEEecchhhehhHhHHHHHH-HhhcCCCccccch
Confidence            345568999999999999999999999 444433222 2223456554443

>KOG1815|consensus

Probab=81.94  E-value=0.8  Score=42.58  Aligned_cols=58  Identities=31%  Similarity=0.666  Sum_probs=41.4

Q ss_pred             CCceeecccccccCC-cEEccCCCccCHhHHHHHHHhCCC-----CCccc--ccccccccCCceee
Q psy2200         131 GQIYDCNICLDTAKD-AVISMCGHLFCWPCLHQWLETCPN-----RQTCP--VCKAAIDKDKVIPV  188 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~-----~~~CP--~Cr~~~~~~~~~~~  188 (248)
                      .....|.||.+.+.. .+.+.|||.||..|+..++..+-.     ..+||  -|++.+....+..+
T Consensus        68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~~~  133 (444)
T KOG1815|consen   68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVEKL  133 (444)
T ss_pred             CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCceeeee
Confidence            344789999998875 667799999999999999876321     14565  47666665554433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	248
4a49_A	84	Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex Len		2e-04
4a4c_A	391	Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Comp		6e-04
4a4b_A	391	Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Za		6e-04
1fbv_A	388	Structure Of A Cbl-Ubch7 Complex: Ring Domain Funct		7e-04
3vgo_A	394	Crystal Structure Of The N-Terminal Fragment Of Cbl		7e-04
1jm7_A	112	Solution Structure Of The Brca1/bard1 Ring-domain H		7e-04
2y1m_A	389	Structure Of Native C-Cbl Length = 389		7e-04
2k4d_A	83	E2-C-Cbl Recognition Is Necessary But Not Sufficien		8e-04
2ldr_A	82	Solution Structure Of Helix-Ring Domain Of Cbl-B In		9e-04

>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex Length = 84

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 106 GSKQTPPNRDEGSGDQKKTDGENDKGQIYD-CNICLDTAKDAVISMCGHLFCWPCLHQWL 164
           GS+ TP  +D     Q++ +   + G  +  C IC +  KD  I  CGHL C  CL  W 
Sbjct: 1   GSEPTP--QDHIKVTQEQFELXCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQ 58
Query: 165 ETCPNRQTCPVCKAAIDKDKVIPV 188
           E+    Q CP C+  I   + I V
Sbjct: 59  ES--EGQGCPFCRCEIKGTEPIVV 80

>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex Length = 391

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 111 PPNRDEGSGDQKKTDGENDKGQIYD-CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPN 169
           P  +D     Q++ +   + G  +  C IC +  KD  I  CGHL C  CL  W E+   
Sbjct: 311 PTPQDHIKVTQEQYELXCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES--E 368
Query: 170 RQTCPVCKAAIDKDKVIPV 188
            Q CP C+  I   + I V
Sbjct: 369 GQGCPFCRCEIKGTEPIVV 387

>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex Length = 391

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 111 PPNRDEGSGDQKKTDGENDKGQIYD-CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPN 169
           P  +D     Q++ +   + G  +  C IC +  KD  I  CGHL C  CL  W E+   
Sbjct: 311 PTPQDHIKVTQEQFELXCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES--E 368
Query: 170 RQTCPVCKAAIDKDKVIPV 188
            Q CP C+  I   + I V
Sbjct: 369 GQGCPFCRCEIKGTEPIVV 387

>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In Ubiquitin-Protein Ligases Length = 388

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 111 PPNRDEGSGDQKKTDGENDKGQIYD-CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPN 169
           P  +D     Q++ +   + G  +  C IC +  KD  I  CGHL C  CL  W E+   
Sbjct: 309 PTPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES--E 366
Query: 170 RQTCPVCKAAIDKDKVIPV 188
            Q CP C+  I   + I V
Sbjct: 367 GQGCPFCRCEIKGTEPIVV 385

>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B Length = 394

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPV 188
           C IC +  KD  I  CGHL C  CL  W E+  + Q CP C+  I   + I V
Sbjct: 341 CKICAENDKDVKIEPCGHLMCTSCLTAWQES--DGQGCPFCRCEIKGTEPIIV 391

>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain Heterodimer Length = 112

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 128 NDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182
           N   +I +C ICL+  K+ V + C H+FC  C+ + L        CP+CK  I K
Sbjct: 16  NAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70

>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl Length = 389

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 111 PPNRDEGSGDQKKTDGENDKGQIYD-CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPN 169
           P  +D     Q++ +   + G  +  C IC +  KD  I  CGHL C  CL  W E+   
Sbjct: 309 PTPQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES--E 366
Query: 170 RQTCPVCKAAIDKDKVIPV 188
            Q CP C+  I   + I V
Sbjct: 367 GQGCPFCRCEIKGTEPIVV 385

>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For Ubiquitination Activity Length = 83

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPV 188
           C IC +  KD  I  CGHL C  CL  W E+    Q CP C+  I   + I V
Sbjct: 27  CKICAENDKDVKIEPCGHLMCTSCLTSWQES--EGQGCPFCRCEIKGTEPIVV 77

>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The Tyr363 Phosphorylated Form Length = 82

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPV 188
           C IC +  KD  I  CGHL C  CL  W E+  + Q CP C+  I   + I V
Sbjct: 29  CKICAENDKDVKIEPCGHLMCTSCLTAWQES--DGQGCPFCRCEIKGTEPIIV 79

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	248
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	1e-19
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	4e-04
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	8e-18
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	3e-16
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	5e-16
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	5e-16
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	2e-14
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	2e-04
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	6e-13
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	1e-11
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	2e-11
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	2e-11
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	4e-11
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	5e-11
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	3e-10
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	3e-10
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	3e-10
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	1e-09
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	1e-09
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	2e-09
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	2e-09
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	5e-09
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	5e-09
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	1e-08
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	2e-08
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	2e-08
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	3e-08
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	3e-08
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	4e-08
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	1e-07
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	4e-08
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	4e-08
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	5e-08
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	5e-08
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	6e-08
1z6u_A	150	NP95-like ring finger protein isoform B; structura	8e-08
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	1e-07
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	3e-07
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	7e-07
2ect_A	78	Ring finger protein 126; metal binding protein, st	8e-07
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	1e-06
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	2e-06
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	3e-06
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	4e-06
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	8e-06
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	9e-06
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	9e-06
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	1e-05
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	2e-05
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	2e-05
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	2e-05
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	4e-05
3nw0_A	238	Non-structural maintenance of chromosomes element	4e-05
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	4e-05
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	6e-05
2ea5_A	68	Cell growth regulator with ring finger domain prot	6e-05
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	1e-04
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	3e-04
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	4e-04
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	5e-04
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	9e-04

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 86.0 bits (212), Expect = 1e-19
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 120 DQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAA 179
            ++             C IC +  KD  I  CGHL C  CL  W E+    Q CP C+  
Sbjct: 319 QEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES--EGQGCPFCRCE 376

Query: 180 IDKDKVIPVY 189
           I   + I V 
Sbjct: 377 IKGTEPIVVD 386

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 11/36 (30%), Positives = 14/36 (38%)

Query: 21  DQKKTDGGNDKSQIYDCNICFDTAKDAVISMCGHLF 56
            ++        S    C IC +  KD  I  CGHL 
Sbjct: 319 QEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLM 354

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 74.0 bits (182), Expect = 8e-18
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 10/66 (15%)

Query: 131 GQIYDCNICLDT-------AKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183
           G +  C IC+D         +  V + CGH+FC  CL   L+   N  TCP C+  I+  
Sbjct: 1   GAMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NANTCPTCRKKINHK 57

Query: 184 KVIPVY 189
           +  P+Y
Sbjct: 58  RYHPIY 63

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 71.1 bits (174), Expect = 3e-16
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 132 QIYDCNICLDTAKDAVI-SMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY 189
           +++ C IC++  +DA +   C  L C+ C+ +WL     R  CP C+A +   +++   
Sbjct: 21  EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTE--QRAQCPHCRAPLQLRELVNCR 77

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 69.5 bits (170), Expect = 5e-16
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 119 GDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKA 178
           G    +        + +C ICL T    V   C H+FC+ C+          + C +C+ 
Sbjct: 1   GSSGSSGNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASW---LGKRCALCRQ 57

Query: 179 AIDKDKVIPVYGRG 192
            I +D +      G
Sbjct: 58  EIPEDFLDSGPSSG 71

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 69.5 bits (170), Expect = 5e-16
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 10/68 (14%)

Query: 129 DKGQIYDCNICLDTAKD-------AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID 181
                  C IC+D   +        V + CGH+FC  CL   L+   N  TCP C+  I+
Sbjct: 6   RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NANTCPTCRKKIN 62

Query: 182 KDKVIPVY 189
             +  P+Y
Sbjct: 63  HKRYHPIY 70

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 65.6 bits (160), Expect = 2e-14
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 119 GDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKA 178
           G    + G  ++   + C IC    ++ V++ C H FC  C  +          C +C  
Sbjct: 1   GSSGSSGGSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFR---ATPRCYICDQ 57

Query: 179 AIDK 182
               
Sbjct: 58  PTGG 61

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 9/37 (24%), Positives = 17/37 (45%)

Query: 20 GDQKKTDGGNDKSQIYDCNICFDTAKDAVISMCGHLF 56
          G    + G  ++   + C IC    ++ V++ C H F
Sbjct: 1  GSSGSSGGSEEEEIPFRCFICRQAFQNPVVTKCRHYF 37

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 61.3 bits (149), Expect = 6e-13
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV 185
           Y C  C         + CGH FC  C+   L +      C  C+ +I KDKV
Sbjct: 16  YKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSS--PKCTACQESIVKDKV 65

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 60.1 bits (145), Expect = 1e-11
 Identities = 20/97 (20%), Positives = 41/97 (42%), Gaps = 7/97 (7%)

Query: 84  QRTERENSSVQSKVSNMATTSSGSKQTPPNRDEGSGDQKKTDGENDKGQIYDCNICLDTA 143
            R++++  ++    +     +   K+    + E          EN+      C IC +  
Sbjct: 19  NRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENE----LQCIICSEYF 74

Query: 144 KDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAI 180
            +AV   C H FC  C+++W++    +  CP+C+  I
Sbjct: 75  IEAVTLNCAHSFCSYCINEWMK---RKIECPICRKDI 108

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 57.4 bits (139), Expect = 2e-11
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 136 CNICLDTAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182
           C ICL+   +  +++ C H FC+ C+ +W+       TCP+CK  ++ 
Sbjct: 8   CPICLEDPSNYSMALPCLHAFCYVCITRWIRQ---NPTCPLCKVPVES 52

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 57.2 bits (138), Expect = 2e-11
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 10/71 (14%)

Query: 119 GDQKKTDGENDKGQIYDCNICLDTAKD-------AVISMCGHLFCWPCLHQWLETCPNRQ 171
           G    +           C IC+D   +        V + CGH+FC  CL   L+   N  
Sbjct: 1   GSSGSSGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NAN 57

Query: 172 TCPVCKAAIDK 182
           TCP C+  I+ 
Sbjct: 58  TCPTCRKKINH 68

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 57.1 bits (138), Expect = 4e-11
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 136 CNICLDTAKDAV-ISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIP 187
           C IC +    A+ I  C H +C  C+ ++L     +  CP C   + +  +  
Sbjct: 25  CGICFEYFNIAMIIPQCSHNYCSLCIRKFLS---YKTQCPTCCVTVTEPDLKN 74

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 57.4 bits (139), Expect = 5e-11
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKA 178
           C ICL+  K+ V + C H+FC  C+ + L        CP+CK 
Sbjct: 24  CPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKN 66

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 54.4 bits (131), Expect = 3e-10
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 136 CNICLDTAKDAV-ISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIP 187
           C+IC     DA  I+ C H FC  C+ +          CP C   + + + + 
Sbjct: 18  CSICKGYLIDATTITECLHTFCKSCIVRHFY---YSNRCPKCNIVVHQTQPLS 67

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 53.9 bits (130), Expect = 3e-10
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVC 176
           C++CL+  K+ VI  CGH FC  C+ +W E       CPVC
Sbjct: 18  CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 55.6 bits (134), Expect = 3e-10
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPV 188
           Y+C ICL   ++AV + CGH FC  C+ + +        CPV    + ++++ P 
Sbjct: 19  YECPICLMALREAVQTPCGHRFCKACIIKSIRD--AGHKCPVDNEILLENQLFPD 71

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 53.8 bits (129), Expect = 1e-09
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAI 180
             C IC++   + V   C H  C PC    +E       CP C+  +
Sbjct: 16  CQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKAS--LCCPFCRRRV 60

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 52.8 bits (127), Expect = 1e-09
 Identities = 20/50 (40%), Positives = 27/50 (54%)

Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV 185
           C ICLD  +  V   CGH FC  C+ Q  ET      CP+CK ++ K+ +
Sbjct: 23  CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 53.0 bits (127), Expect = 2e-09
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 135 DCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPV 188
            C  C +     + ++C H  C  CL +         +CP C+  + +   + V
Sbjct: 54  QCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVF--SCPACRYDLGRSYAMQV 105

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 52.0 bits (125), Expect = 2e-09
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQ---TCPVCKA 178
           C ICL+  K+ V + C H FC  C+    E+  N      CPVC+ 
Sbjct: 22  CPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRV 67

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 52.2 bits (125), Expect = 5e-09
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIP 187
             C IC     D V + C HLFC  C+ + L+       CP C+       +  
Sbjct: 24  ISCQICEHILADPVETSCKHLFCRICILRCLKV--MGSYCPSCRYPCFPTDLES 75

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 50.5 bits (121), Expect = 5e-09
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 9/68 (13%)

Query: 117 GSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVC 176
           GS  + K   + +     +C IC+D   D +I  C H FC  C+ +W +     + CP+C
Sbjct: 4   GSSGRVKQLTDEE-----ECCICMDGRAD-LILPCAHSFCQKCIDKWSDR---HRNCPIC 54

Query: 177 KAAIDKDK 184
           +  +    
Sbjct: 55  RLQMTGAN 62

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 49.3 bits (118), Expect = 1e-08
 Identities = 18/41 (43%), Positives = 21/41 (51%)

Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVC 176
           C ICLD  +  V   CGH FC  C+ Q  ET      CP+C
Sbjct: 23  CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQ---TCPVCKA 178
           C ICL+     +   CGH FC  CL    +     +   +CPVC+ 
Sbjct: 22  CPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRI 67

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 136 CNICLDTAKDAV-ISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182
           C +C     DA  I  C H FC  C+ ++LE     + CP+C   + K
Sbjct: 18  CVLCGGYFIDATTIIECLHSFCKTCIVRYLE---TSKYCPICDVQVHK 62

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 50.5 bits (120), Expect = 3e-08
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCK 177
           Y C+ C +  +    + CGH +C  CL   L + P  Q C  C 
Sbjct: 32  YLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGP--QNCAACV 73

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 49.9 bits (119), Expect = 3e-08
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 136 CNICLDTAKDAV-ISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIP 187
           C+ C +  ++ V +  C H+FC  C+   + T      CPVC        +  
Sbjct: 25  CSRCTNILREPVCLGGCEHIFCSNCVSDCIGTG-----CPVCYTPAWIQDLKI 72

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 49.8 bits (118), Expect = 4e-08
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 10/76 (13%)

Query: 121 QKKTDGENDKGQIYDCNICLDTAKD-------AVISMCGHLFCWPCLHQWLETCPNRQTC 173
            K+            C IC+D   +        V + CGH+FC  CL   L+   N  TC
Sbjct: 60  HKRYHPIYIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NANTC 116

Query: 174 PVCKAAIDKDKVIPVY 189
           P C+  I+  +  P+Y
Sbjct: 117 PTCRKKINHKRYHPIY 132

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 48.6 bits (115), Expect = 1e-07
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 10/55 (18%)

Query: 136 CNICLDTAKD-------AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183
           C IC+D   +        V + CGH+FC  CL   L+   N  TCP C+  I+  
Sbjct: 10  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NANTCPTCRKKINHK 61

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 50.4 bits (120), Expect = 4e-08
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 3/48 (6%)

Query: 136 CNICLDTAKDAV-ISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182
           C ICLD  K+ +    C H FC  C+   L +      CP C+  +  
Sbjct: 57  CPICLDMLKNTMTTKECLHRFCADCIITALRSGNKE--CPTCRKKLVS 102

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 48.2 bits (115), Expect = 4e-08
 Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 136 CNICLDTAKDAV-ISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAI 180
           C IC D   DAV I  CG+ +C  C+   L       TCP C    
Sbjct: 18  CLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEH-TCPTCHQND 62

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 48.6 bits (116), Expect = 5e-08
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 136 CNICLDTAKDAV-ISMCGHLFCWPCLHQWLETCPNRQTCPVCKA 178
           C IC D   DAV I  CG+ +C  C+   L    +  TCP C  
Sbjct: 16  CLICKDIMTDAVVIPCCGNSYCDECIRTALLES-DEHTCPTCHQ 58

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 51.8 bits (123), Expect = 5e-08
 Identities = 14/77 (18%), Positives = 23/77 (29%), Gaps = 16/77 (20%)

Query: 120 DQKKTDGENDKGQIYDCNICL------DTAKDAVI--SMCGHLFCWPCLHQWLETCPNRQ 171
                  + +  +   CNIC                 + C       CL +W +T  + +
Sbjct: 295 WSDGPKLDEEDNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGK 354

Query: 172 --------TCPVCKAAI 180
                    CP CKA +
Sbjct: 355 TFLEVSFGQCPFCKAKL 371

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 50.1 bits (119), Expect = 6e-08
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPV 188
           Y+C ICL   ++AV + CGH FC  C+ + +        CPV    + ++++ P 
Sbjct: 19  YECPICLMALREAVQTPCGHRFCKACIIKSIR--DAGHKCPVDNEILLENQLFPD 71

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 49.2 bits (117), Expect = 8e-08
 Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPV 188
           C  C +     V + C H  C  CL +  +      +CP C+  + ++ ++  
Sbjct: 81  CVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVF--SCPACRHDLGQNYIMIP 131

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQ----TCPVCKA 178
           C ICL+   + +   CGH  C  C+    +          +CPVC  
Sbjct: 15  CPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGI 61

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 6/58 (10%)

Query: 124 TDGENDKGQIYDCNICLD--TAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPVCKA 178
           T+     GQ   C IC       D    + C H F  PC+  WL+      TCPVC+ 
Sbjct: 31  TEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK---SGTCPVCRC 85

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 44.2 bits (105), Expect = 7e-07
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 7/50 (14%)

Query: 135 DCNICLD---TAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPVCKAAI 180
            C ICL+   T++     + CGHL    C  + L+       CP+C    
Sbjct: 7   GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE---GYRCPLCSGPS 53

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 44.7 bits (106), Expect = 8e-07
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 8/70 (11%)

Query: 117 GSGDQKKTDGENDKGQIYDCNICLD--TAKDAVISM-CGHLFCWPCLHQWLETCPNRQTC 173
           GS     T+     G   +C +C +     ++V  + C HLF   C+  WLE      +C
Sbjct: 1   GSSGSSGTEEHVGSGL--ECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLE---QHDSC 55

Query: 174 PVCKAAIDKD 183
           PVC+ ++   
Sbjct: 56  PVCRKSLTGQ 65

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 44.1 bits (104), Expect = 1e-06
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 133 IYDCNICLDTA-KDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183
           +  CNIC     +      CG     PC+ ++ ++      CP C      +
Sbjct: 15  VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEP-RCPHCNDYWPHE 65

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 42.7 bits (101), Expect = 2e-06
 Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPN-RQTCPV 175
           C  C   AK   +  C H  C  CL      CP  +   P+
Sbjct: 9   CQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQAPWPL 49

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 11/69 (15%)

Query: 117 GSGDQKKTDGENDKGQIYDCNICLD--TAKDAVISM-CGHLFCWPCLHQWLETCPNRQTC 173
           GS  + K    ++      C +CL+    +D +    C H F   CL +WLE    R+ C
Sbjct: 4   GSSGKVKELNLHE-----LCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV---RKVC 55

Query: 174 PVCKAAIDK 182
           P+C   + +
Sbjct: 56  PLCNMPVLQ 64

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 42.5 bits (100), Expect = 4e-06
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 127 ENDKGQIYDCNICLDTAKDAVI--SMCGHLF-CWPCLHQWLETCPNRQTCPVCKAAIDKD 183
           E+ +  +  C++C    +D  I     GHL  C+ C  +  +      +CP+CK  I   
Sbjct: 1   EDCQNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKK---AGASCPICKKEI--Q 55

Query: 184 KVIPVY 189
            VI V+
Sbjct: 56  LVIKVF 61

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79

 Score = 42.1 bits (99), Expect = 8e-06
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 10/55 (18%)

Query: 136 CNICLDTAKDAVISMCGHLF-CWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY 189
           C +C +   ++    CGH   C  C           Q+CPVC++ +  + V  VY
Sbjct: 21  CMVCCEEEINSTFCPCGHTVCCESC-------AAQLQSCPVCRSRV--EHVQHVY 66

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 42.0 bits (99), Expect = 9e-06
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 4/54 (7%)

Query: 136 CNICLDTAKDAVIS----MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV 185
           C IC+++  +  +      CGH  C  CL + L +  N   CP C        +
Sbjct: 18  CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL 71

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61

 Score = 41.2 bits (97), Expect = 9e-06
 Identities = 8/55 (14%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 136 CNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY 189
           C I     +  V+S     +F    L Q+++        P+    +  ++++ + 
Sbjct: 6   CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD---TGNDPITNEPLSIEEIVEIV 57

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 14/84 (16%)

Query: 107 SKQTPPNRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLF-CWPCLHQWLE 165
           S  +   + E S +++    + +K     C IC+D     V   CGHL  C  C      
Sbjct: 3   SGSSGSLQKEISTEEQLRRLQEEK----LCKICMDRNIAIVFVPCGHLVTCKQC------ 52

Query: 166 TCPNRQTCPVCKAAIDKDKVIPVY 189
                  CP+C   I       ++
Sbjct: 53  -AEAVDKCPMCYTVI--TFKQKIF 73

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 122 KKTDGENDKGQIYDCNICLD--TAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPVCKA 178
           +  +   ++     C ICL      + V  + C HLF   C+ QWL T    + CP+C+ 
Sbjct: 3   QDGEEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT---NKKCPICRV 59

Query: 179 AIDKD 183
            I+  
Sbjct: 60  DIEAQ 64

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 4/55 (7%)

Query: 136 CNICLDTAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPV--CKAAIDKDKVIP 187
           C I     +  +IS  C H+F    +  +L+    R  CP   C   +     + 
Sbjct: 184 CPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRD-CPQAACSQVVSMRDFVR 237

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 8/57 (14%)

Query: 136 CNICLDTAKDAVI--SMCGHLF-CWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY 189
           C IC    K+  I     GHL  C+ C  +  +     + CPVC+  I    ++  Y
Sbjct: 11  CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN---KPCPVCRQPI--QMIVLTY 62

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345

 Score = 43.0 bits (99), Expect = 4e-05
 Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 10/107 (9%)

Query: 84  QRTERENSSVQSKVSNMATTSSGSKQTPPNRDEGSGDQKKTDGENDKGQIYDCNICLDTA 143
                  +S++   S +       K       E        +      +   C +C+D  
Sbjct: 246 AAANIFKNSLKEIDSTLYKNLFVDKNMKYIPTEDVSGLSLEEQLRRLQEERTCKVCMDKE 305

Query: 144 KDAVISMCGHL-FCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY 189
              V   CGHL  C  C        P+ + CP+C+  I     +  +
Sbjct: 306 VSVVFIPCGHLVVCQEC-------APSLRKCPICRGII--KGTVRTF 343

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 42.8 bits (100), Expect = 4e-05
 Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 2/52 (3%)

Query: 133 IYDCNICLDTA-KDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183
           +  CNIC     +      CG     PC+ ++ ++      CP C      +
Sbjct: 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEP-RCPHCNDYWPHE 230

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 40.1 bits (93), Expect = 4e-05
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 127 ENDKGQIYDCNICLD----TAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182
            + K    +C +C++       +     CG+  C  C H+          CP C+    +
Sbjct: 5   PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGL--CPACRKPYPE 62

Query: 183 DKVI 186
           D  +
Sbjct: 63  DPAV 66

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 38.7 bits (91), Expect = 6e-05
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 135 DCNICLDTAKDA----VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAI 180
           +C +CL   +D      +  CGH F   C+  WL +     TCP+C+  +
Sbjct: 7   ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS---TCPLCRLTV 53

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 39.0 bits (91), Expect = 6e-05
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 10/73 (13%)

Query: 119 GDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHL-FCWPCLHQWLETCPNRQTCPVCK 177
           G    +  E  +    DC +C +   + V+  C H   C  C           Q CP+C+
Sbjct: 1   GSSGSSGVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGC-------VKYFQQCPMCR 53

Query: 178 AAIDKDKVIPVYG 190
             +   +   + G
Sbjct: 54  QFV--QESFALSG 64

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 94

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 3/41 (7%)

Query: 130 KGQIYDCNICLDTAKDA---VISMCGHLFCWPCLHQWLETC 167
                 C +CL          I+ C  +FC  CL Q++E  
Sbjct: 2   SSGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELL 42

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 6/60 (10%)

Query: 127 ENDKGQIYDCNICLD--TAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183
            N + +   C +C+    ++  +  + C H F   C+ +WL+     +TCP+C+A     
Sbjct: 17  NNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA---NRTCPICRADSGPS 73

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968

 Score = 40.1 bits (93), Expect = 4e-04
 Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 7/71 (9%)

Query: 121 QKKTDGENDKGQIYD---CNICLDTAKDAVISMC-GHLFCWPCLHQWLETCPNRQTCPVC 176
           +   + + + G + D     +     KD VI            +   L    +  T P  
Sbjct: 876 KADEEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLL---SDSTDPFN 932

Query: 177 KAAIDKDKVIP 187
           +  +  + V P
Sbjct: 933 RMPLKLEDVTP 943

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100

 Score = 37.4 bits (87), Expect = 5e-04
 Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 6/70 (8%)

Query: 121 QKKTDGENDKGQIYD---CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCK 177
            K    E D     D     +      D V    G +     + + L    N  T P  +
Sbjct: 14  AKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLL---NSPTDPFNR 70

Query: 178 AAIDKDKVIP 187
             + +  + P
Sbjct: 71  QTLTESMLEP 80

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 36.4 bits (84), Expect = 9e-04
 Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 7/54 (12%)

Query: 136 CNICLDTAKDA----VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV 185
           C  C    K      V   C H F   C+  W++       CP+C+      ++
Sbjct: 29  CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ---NNRCPLCQQDWVVQRI 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	248
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.82
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.59
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.57
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.55
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.54
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.54
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.53
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.53
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.53
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.52
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.52
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.51
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.5
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.49
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.49
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.49
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.49
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.47
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.46
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.46
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.45
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.44
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.43
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.41
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.4
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.39
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.38
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.37
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.36
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.36
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.35
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.34
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.34
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.33
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.33
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.32
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.32
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.31
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.31
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.31
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.3
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.27
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.25
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.25
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.24
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.24
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.24
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.23
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.21
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.2
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.18
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.18
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.17
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	99.16
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.15
2ea5_A	68	Cell growth regulator with ring finger domain prot	99.13
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	99.12
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.11
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	99.11
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.09
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.05
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	99.02
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.97
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.87
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.84
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	98.78
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	98.72
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.7
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.69
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	98.66
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.65
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	98.65
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.63
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	98.63
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.62
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.58
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	98.57
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	98.56
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.55
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	98.54
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	98.53
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	98.53
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.44
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.42
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.41
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.41
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.4
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	98.38
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.34
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.32
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.32
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.26
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.26
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	98.24
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.21
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.21
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.12
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.12
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.1
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.09
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.08
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	98.08
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.06
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.05
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.04
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.0
2ea5_A	68	Cell growth regulator with ring finger domain prot	97.99
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	97.98
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	97.98
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	97.96
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	97.96
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	97.95
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	97.94
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	97.88
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	97.88
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	97.87
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	97.86
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	97.86
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	97.84
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	97.83
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	97.78
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	97.76
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	97.75
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	97.69
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	97.66
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	97.52
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	97.26
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	97.26
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	97.26
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	97.21
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	97.21
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	97.11
3nw0_A	238	Non-structural maintenance of chromosomes element	97.03
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	96.88
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	96.74
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	96.62
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	96.55
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	96.36
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	95.86
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	95.64
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	94.7
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	94.68
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	89.91
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	89.19
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	85.2
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	84.78
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	82.95
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	81.79
1weu_A	91	Inhibitor of growth family, member 4; structural g	80.59
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	80.24

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.82  E-value=2e-21  Score=148.95  Aligned_cols=114  Identities=27%  Similarity=0.541  Sum_probs=85.2

Q ss_pred             CCceeccccCCCCCCc-------eEeccCccc-ccceeccccCCCCCCCCCCCCCCCCCCCCccccccchhhhhcccccc
Q psy2200          32 SQIYDCNICFDTAKDA-------VISMCGHLF-WLKFFYWPGRGGSEIDPRDEVPPRPQGQRTERENSSVQSKVSNMATT  103 (248)
Q Consensus        32 ~~~~~C~iCld~~~~~-------v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~~~p~rp~~~~~e~~~~~~~~~~~~~~~~  103 (248)
                      ...++|+||++.+.+|       ++++|||.| ..|+..|+....  .+|....+-....             +..+   
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~--~CP~Cr~~~~~~~-------------l~~l---   66 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN--TCPTCRKKINHKR-------------YHPI---   66 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS--BCTTTCCBCTTTC-------------EEEC---
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC--CCCCCCCcCcccc-------------cccc---
Confidence            3468999999999998       999999999 567778876443  4443322111100             0000   


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCccCCCCceeecccccccCCc-------EEccCCCccCHhHHHHHHHhCCCCCccccc
Q psy2200         104 SSGSKQTPPNRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDA-------VISMCGHLFCWPCLHQWLETCPNRQTCPVC  176 (248)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C  176 (248)
                                              ....+...|+||++.+.++       +.++|||+||..||.+|++...   +||+|
T Consensus        67 ------------------------~i~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~---~CP~C  119 (133)
T 4ap4_A           67 ------------------------YIGSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN---TCPTC  119 (133)
T ss_dssp             ------------------------BCSSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCS---BCTTT
T ss_pred             ------------------------ccCCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCC---CCCCC
Confidence                                    0012336899999998876       8889999999999999999866   99999


Q ss_pred             ccccccCCceeeec
Q psy2200         177 KAAIDKDKVIPVYG  190 (248)
Q Consensus       177 r~~~~~~~~~~~~~  190 (248)
                      |..+..++++++|.
T Consensus       120 r~~~~~~~~~~~~~  133 (133)
T 4ap4_A          120 RKKINHKRYHPIYI  133 (133)
T ss_dssp             CCBCCGGGEEEECC
T ss_pred             CCcCChhcceeeeC
Confidence            99999999999883

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=1.8e-15  Score=103.84  Aligned_cols=61  Identities=21%  Similarity=0.454  Sum_probs=52.1

Q ss_pred             CccCCCCceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeee
Q psy2200         126 GENDKGQIYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY  189 (248)
Q Consensus       126 ~~~~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~  189 (248)
                      +.....+.+.|+||++.+.+|+.+ +|||+||..||..|++...   .||+||+.+...++..+.
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~---~CP~Cr~~~~~~~~~~~~   69 (72)
T 2djb_A            8 NLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSN---RCPKCNIVVHQTQPLSGP   69 (72)
T ss_dssp             CCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCS---SCTTTCCCCCSSCSCCCC
T ss_pred             hHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCC---cCCCcCcccCcccccccC
Confidence            344456678999999999999997 9999999999999998765   999999999887765543

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.57  E-value=6.7e-15  Score=103.71  Aligned_cols=68  Identities=25%  Similarity=0.535  Sum_probs=57.8

Q ss_pred             cCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhC---CCCCcccccccccccCCceeeecCCCCC
Q psy2200         128 NDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETC---PNRQTCPVCKAAIDKDKVIPVYGRGGSS  195 (248)
Q Consensus       128 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---~~~~~CP~Cr~~~~~~~~~~~~~~~~~~  195 (248)
                      ....+.+.|+||++.+.+|++++|||+||..|+..|+...   .+...||+||..+...++.+++.+.+.+
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v   84 (85)
T 2ecw_A           14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV   84 (85)
T ss_dssp             CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred             HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence            3345668999999999999999999999999999999873   1245999999999999999888776653

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=7.7e-15  Score=103.40  Aligned_cols=67  Identities=24%  Similarity=0.544  Sum_probs=56.8

Q ss_pred             cCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHh---CCCCCcccccccccccCCceeeecCCCC
Q psy2200         128 NDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLET---CPNRQTCPVCKAAIDKDKVIPVYGRGGS  194 (248)
Q Consensus       128 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~---~~~~~~CP~Cr~~~~~~~~~~~~~~~~~  194 (248)
                      ....+.+.|+||++.+.+|+.++|||+||..|+..|+..   ..+...||+||..+...++.+++.+.+.
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~   83 (85)
T 2ecv_A           14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANI   83 (85)
T ss_dssp             CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCC
T ss_pred             HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHh
Confidence            345567899999999999999999999999999999987   1224599999999999888888877665

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.54  E-value=4.1e-15  Score=103.49  Aligned_cols=63  Identities=24%  Similarity=0.497  Sum_probs=54.8

Q ss_pred             CCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCC
Q psy2200         130 KGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGS  194 (248)
Q Consensus       130 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~  194 (248)
                      ..+.+.|+||++.+.+|++++|||+||..||..|+...  ...||+||..+...++.+++.+.+.
T Consensus         5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~--~~~CP~C~~~~~~~~l~~n~~l~~~   67 (78)
T 1t1h_A            5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG--HKTCPKSQETLLHAGLTPNYVLKSL   67 (78)
T ss_dssp             CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT--CCBCTTTCCBCSSCCCEECTTTHHH
T ss_pred             CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHC--cCCCCCCcCCCChhhCccCHHHHHH
Confidence            35568999999999999999999999999999999862  3499999999998888888776544

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=6.3e-15  Score=99.28  Aligned_cols=58  Identities=29%  Similarity=0.592  Sum_probs=48.9

Q ss_pred             CccCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCc
Q psy2200         126 GENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV  185 (248)
Q Consensus       126 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~  185 (248)
                      ......+.+.|+||++.+.+|+.++|||+||..||..|+...  ...||+||+.+..+++
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~i   65 (66)
T 2ecy_A            8 FVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSS--SPKCTACQESIVKDKV   65 (66)
T ss_dssp             SCCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTS--SCCCTTTCCCCCTTTC
T ss_pred             hhhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhC--cCCCCCCCcCCChhhc
Confidence            334456679999999999999999999999999999999632  3489999999987664

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.53  E-value=7.8e-15  Score=101.19  Aligned_cols=56  Identities=29%  Similarity=0.577  Sum_probs=47.3

Q ss_pred             CccCCCCceeecccccccCCcEEcc-CCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200         126 GENDKGQIYDCNICLDTAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK  182 (248)
Q Consensus       126 ~~~~~~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~  182 (248)
                      ......+.+.|+||++.+.+|+.++ |||+||..||..|+.... ...||+||+.+..
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-~~~CP~Cr~~~~~   64 (74)
T 2yur_A            8 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD-EHTCPTCHQNDVS   64 (74)
T ss_dssp             CCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSS-SSCCSSSCCSSCC
T ss_pred             ccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcC-CCcCCCCCCcCCC
Confidence            3444567789999999999999999 999999999999998753 3589999997543

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=9.9e-15  Score=100.14  Aligned_cols=59  Identities=36%  Similarity=0.687  Sum_probs=49.6

Q ss_pred             ccCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCc
Q psy2200         127 ENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV  185 (248)
Q Consensus       127 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~  185 (248)
                      .....+.+.|+||++.+.+|++++|||+||..||..|++.......||+||+.+..+++
T Consensus        14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   72 (73)
T 2ysl_A           14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI   72 (73)
T ss_dssp             CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred             HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence            34456678999999999999999999999999999999743335599999999986654

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.53  E-value=1.8e-15  Score=105.49  Aligned_cols=66  Identities=20%  Similarity=0.484  Sum_probs=56.1

Q ss_pred             CCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhC----CCCCcccccccccccCCceeeecCCCC
Q psy2200         129 DKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETC----PNRQTCPVCKAAIDKDKVIPVYGRGGS  194 (248)
Q Consensus       129 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~----~~~~~CP~Cr~~~~~~~~~~~~~~~~~  194 (248)
                      ...+.+.|+||++.+.+|+.++|||+||..||..|+...    .....||+||..+...++.+++.+.+.
T Consensus         8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~l   77 (79)
T 2egp_A            8 NVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANI   77 (79)
T ss_dssp             CCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCC
T ss_pred             hcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHh
Confidence            345668999999999999999999999999999999862    124599999999998888888877665

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.52  E-value=1.2e-14  Score=104.28  Aligned_cols=66  Identities=27%  Similarity=0.483  Sum_probs=54.7

Q ss_pred             cCCCCceeecccccccCCcEEcc-CCCccCHhHHHHHHHhCCCCCccccccccc-ccCCceeeecCCCC
Q psy2200         128 NDKGQIYDCNICLDTAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPVCKAAI-DKDKVIPVYGRGGS  194 (248)
Q Consensus       128 ~~~~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~-~~~~~~~~~~~~~~  194 (248)
                      ....+.+.|+||++.+.+|+.++ |||+||..||..|+.... ...||+||..+ ....+.+++.+.+.
T Consensus         8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~-~~~CP~Cr~~~~~~~~~~~n~~l~~~   75 (92)
T 3ztg_A            8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD-EHTCPTCHQNDVSPDALIANKFLRQA   75 (92)
T ss_dssp             CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCT-TCCCTTTCCSSCCTTSCEECHHHHHH
T ss_pred             ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcC-CCcCcCCCCcCCCccccCcCHHHHHH
Confidence            34566789999999999999999 999999999999997643 45899999997 56677777766544

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.52  E-value=4.4e-15  Score=101.33  Aligned_cols=56  Identities=36%  Similarity=0.902  Sum_probs=50.5

Q ss_pred             CCceeecccccccCCc-------EEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeee
Q psy2200         131 GQIYDCNICLDTAKDA-------VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY  189 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~  189 (248)
                      .+.+.|+||++.+.++       +.++|||+||..||..|++...   .||+||+.+...++.++|
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~---~CP~Cr~~~~~~~~~~~~   70 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN---TCPTCRKKINHKRYHPIY   70 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCS---BCTTTCCBCCCCSCCCCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCC---CCCCCCCccChhheeecc
Confidence            3457899999999887       8899999999999999999876   999999999999888877

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=2.2e-14  Score=100.56  Aligned_cols=50  Identities=24%  Similarity=0.722  Sum_probs=45.2

Q ss_pred             CCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         129 DKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       129 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                      .....+.|+||++.+.+|++++|||+||..||..|++...   .||+||..+.
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~---~CP~Cr~~~~   60 (81)
T 2csy_A           11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATP---RCYICDQPTG   60 (81)
T ss_dssp             CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCS---BCSSSCCBCC
T ss_pred             cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCC---cCCCcCcccc
Confidence            3455689999999999999999999999999999998765   9999999986

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.50  E-value=1.1e-14  Score=103.11  Aligned_cols=64  Identities=16%  Similarity=0.146  Sum_probs=56.7

Q ss_pred             cCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCC
Q psy2200         128 NDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGS  194 (248)
Q Consensus       128 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~  194 (248)
                      ....+.+.|+||++.|.+||+++|||+||+.||..|+....   +||+|+..+...+++++..+...
T Consensus         9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~---~cP~~~~~l~~~~l~pn~~L~~~   72 (85)
T 2kr4_A            9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSP---TDPFNRQMLTESMLEPVPELKEQ   72 (85)
T ss_dssp             TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCS---BCTTTCCBCCGGGCEECHHHHHH
T ss_pred             hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhcCC---CCCCCcCCCChHhcchHHHHHHH
Confidence            34566799999999999999999999999999999999755   99999999999899998876544

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.49  E-value=2.4e-14  Score=104.10  Aligned_cols=66  Identities=14%  Similarity=0.057  Sum_probs=58.8

Q ss_pred             cCCCCceeecccccccCCcEEccCC-CccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCCCC
Q psy2200         128 NDKGQIYDCNICLDTAKDAVISMCG-HLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSK  196 (248)
Q Consensus       128 ~~~~~~~~C~IC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~  196 (248)
                      ....+.+.|+||++.|.+||+++|| |+||+.||..|+....   +||+||..+...++++++.+...+.
T Consensus        17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~---~cP~~~~~l~~~~L~pn~~Lk~~I~   83 (98)
T 1wgm_A           17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ---TDPFNRSPLTMDQIRPNTELKEKIQ   83 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSC---BCTTTCSBCCTTTSEECHHHHHHHH
T ss_pred             hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCC---CCCCCCCCCChhhceEcHHHHHHHH
Confidence            4456779999999999999999999 9999999999998754   9999999999999999988776653

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.49  E-value=9.6e-15  Score=97.45  Aligned_cols=54  Identities=37%  Similarity=0.958  Sum_probs=49.4

Q ss_pred             ceeecccccccCCc-------EEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeee
Q psy2200         133 IYDCNICLDTAKDA-------VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY  189 (248)
Q Consensus       133 ~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~  189 (248)
                      .+.|+||++.+.++       +.++|||.||..|+.+|++...   .||+||+.+...++.++|
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~---~CP~Cr~~~~~~~~~~~~   63 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN---TCPTCRKKINHKRYHPIY   63 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCS---BCTTTCCBCTTTCEEECC
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCC---CCCCCCccCCccceeeee
Confidence            46899999999876       8889999999999999999865   999999999999998887

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=5.6e-15  Score=101.04  Aligned_cols=52  Identities=29%  Similarity=0.652  Sum_probs=45.9

Q ss_pred             CCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCc
Q psy2200         131 GQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV  185 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~  185 (248)
                      .+.+.|+||++.+.+++.++|||+||..||..|+....   .||+||..+...++
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~---~CP~Cr~~~~~~~~   64 (71)
T 2d8t_A           13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGK---RCALCRQEIPEDFL   64 (71)
T ss_dssp             SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSS---BCSSSCCBCCHHHH
T ss_pred             CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCC---cCcCcCchhCHhhc
Confidence            44578999999999999999999999999999998765   99999999876543

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=6.6e-14  Score=99.37  Aligned_cols=58  Identities=24%  Similarity=0.694  Sum_probs=48.9

Q ss_pred             cCCCCceeecccccccCC----cEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCc
Q psy2200         128 NDKGQIYDCNICLDTAKD----AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV  185 (248)
Q Consensus       128 ~~~~~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~  185 (248)
                      +...+.+.|+||++.+.+    |+.++|||.||..|+..|+........||+||..+...++
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i   71 (88)
T 2ct2_A           10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL   71 (88)
T ss_dssp             CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred             hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence            344566899999999998    9999999999999999999986334599999999876543

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=3e-14  Score=96.44  Aligned_cols=50  Identities=36%  Similarity=0.884  Sum_probs=44.1

Q ss_pred             CCCceeecccccccCCc-------EEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200         130 KGQIYDCNICLDTAKDA-------VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK  182 (248)
Q Consensus       130 ~~~~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~  182 (248)
                      ..+.+.|+||++.+.++       +.++|||+||..||..|+....   .||+||..+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~---~CP~Cr~~~~~   68 (69)
T 2ea6_A           12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN---TCPTCRKKINH   68 (69)
T ss_dssp             TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCS---SCTTTCCCCCC
T ss_pred             CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCC---CCCCCCCccCc
Confidence            34567999999999877       8899999999999999999865   99999998864

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.46  E-value=2.6e-14  Score=104.32  Aligned_cols=65  Identities=15%  Similarity=0.147  Sum_probs=57.6

Q ss_pred             cCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCCC
Q psy2200         128 NDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSS  195 (248)
Q Consensus       128 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~  195 (248)
                      ....+.+.|+||++.|.+||+++|||+||+.||..|+....   +||+|+.++...++++++.+...+
T Consensus        24 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~---~cP~~~~~l~~~~L~pn~~Lk~~I   88 (100)
T 2kre_A           24 SDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSP---TDPFNRQTLTESMLEPVPELKEQI   88 (100)
T ss_dssp             SSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCS---BCSSSCCBCCTTSSEECHHHHHHH
T ss_pred             ccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCC---CCCCCCCCCChhhceECHHHHHHH
Confidence            34566799999999999999999999999999999998654   999999999999999998776554

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.1e-13  Score=92.16  Aligned_cols=50  Identities=38%  Similarity=0.705  Sum_probs=42.8

Q ss_pred             ccCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCccccc
Q psy2200         127 ENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVC  176 (248)
Q Consensus       127 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C  176 (248)
                      .+...+.+.|+||++.+.+|++++|||+||..||..|++.......||+|
T Consensus        14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            34456678999999999999999999999999999999864335589998

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.45  E-value=5.9e-14  Score=97.54  Aligned_cols=55  Identities=27%  Similarity=0.672  Sum_probs=45.9

Q ss_pred             CCCceeecccccccCCc---EEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCcee
Q psy2200         130 KGQIYDCNICLDTAKDA---VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIP  187 (248)
Q Consensus       130 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~  187 (248)
                      ......|+||++.+.++   ++++|||.||..||.+|++...   .||+||+.+...++.+
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~---~CP~Cr~~~~~~~~~~   69 (78)
T 2ect_A           12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHD---SCPVCRKSLTGQNTAT   69 (78)
T ss_dssp             SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTC---SCTTTCCCCCCSCSCC
T ss_pred             CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCC---cCcCcCCccCCcccCC
Confidence            34557999999998755   5679999999999999998765   9999999998766544

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=3.6e-14  Score=96.60  Aligned_cols=54  Identities=28%  Similarity=0.793  Sum_probs=46.1

Q ss_pred             cCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCc
Q psy2200         128 NDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV  185 (248)
Q Consensus       128 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~  185 (248)
                      ....+...|+||++.+.+ ++++|||.||..|+..|+....   .||+||..+...+.
T Consensus        10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~---~CP~Cr~~~~~~~~   63 (70)
T 2ecn_A           10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHR---NCPICRLQMTGANE   63 (70)
T ss_dssp             CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCS---SCHHHHHCTTCCCC
T ss_pred             hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcC---cCCCcCCcccCCCc
Confidence            344556899999999999 9999999999999999998654   99999999886543

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.43  E-value=4.1e-14  Score=103.29  Aligned_cols=63  Identities=24%  Similarity=0.747  Sum_probs=53.7

Q ss_pred             CCCCceeecccccccCCcEE-ccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCC
Q psy2200         129 DKGQIYDCNICLDTAKDAVI-SMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGG  193 (248)
Q Consensus       129 ~~~~~~~C~IC~~~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~  193 (248)
                      .+.+.+.|+||++.+.+|+. ++|||+||..||..|+....  ..||+||..+...++.+++.+..
T Consensus        18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~--~~CP~Cr~~~~~~~l~~~~~~~~   81 (100)
T 3lrq_A           18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR--AQCPHCRAPLQLRELVNCRWAEE   81 (100)
T ss_dssp             HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC--SBCTTTCCBCCGGGCEECTTHHH
T ss_pred             cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc--CCCCCCCCcCCHHHhHhhHHHHH
Confidence            34456899999999999999 99999999999999999862  38999999999888877765443

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.41  E-value=1.4e-13  Score=92.30  Aligned_cols=56  Identities=20%  Similarity=0.523  Sum_probs=47.8

Q ss_pred             ceeeccccc-ccCCc----EEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeec
Q psy2200         133 IYDCNICLD-TAKDA----VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYG  190 (248)
Q Consensus       133 ~~~C~IC~~-~~~~p----~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~  190 (248)
                      .+.|+||++ .+.++    ++++|||+||..||.+|+...  ...||+||+.+...++.+++.
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~~~~~~~   63 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG--AGNCPECGTPLRKSNFRVQLF   63 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT--SSSCTTTCCCCSSCCCEEECC
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC--CCcCCCCCCccccccceeecc
Confidence            468999999 88888    578999999999999998753  348999999999988887653

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=2e-13  Score=89.19  Aligned_cols=49  Identities=37%  Similarity=0.904  Sum_probs=41.1

Q ss_pred             cCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCccccc
Q psy2200         128 NDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVC  176 (248)
Q Consensus       128 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C  176 (248)
                      +...+.+.|+||++.+.+|++++|||+||..||..|+........||+|
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           10 ENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             hccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            3445668999999999999999999999999999997642235699998

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.39  E-value=1.7e-13  Score=101.76  Aligned_cols=62  Identities=31%  Similarity=0.680  Sum_probs=53.1

Q ss_pred             CceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCC
Q psy2200         132 QIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGG  193 (248)
Q Consensus       132 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~  193 (248)
                      +.+.|+||++.+.+|+.++|||+||..||..|+....+...||+||..+...++.+++.+..
T Consensus        20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~   81 (112)
T 1jm7_A           20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQ   81 (112)
T ss_dssp             HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSH
T ss_pred             CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHH
Confidence            35689999999999999999999999999999987544568999999999888777665543

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.38  E-value=1.3e-13  Score=100.23  Aligned_cols=62  Identities=21%  Similarity=0.511  Sum_probs=53.7

Q ss_pred             CCCceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCC
Q psy2200         130 KGQIYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGS  194 (248)
Q Consensus       130 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~  194 (248)
                      ..+.+.|+||++.+.+|+.+ +|||.||..||..|+....   .||+||..+...++.+++.+.+.
T Consensus        19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~---~CP~Cr~~~~~~~l~~n~~l~~~   81 (99)
T 2y43_A           19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKT---QCPTCCVTVTEPDLKNNRILDEL   81 (99)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCC---BCTTTCCBCCGGGCEECHHHHHH
T ss_pred             CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCC---CCCCCCCcCChhhCCcCHHHHHH
Confidence            34567999999999999998 8999999999999998755   99999999998888887766544

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.37  E-value=6e-13  Score=90.19  Aligned_cols=49  Identities=37%  Similarity=0.791  Sum_probs=42.2

Q ss_pred             CCceeecccccccC---CcEEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200         131 GQIYDCNICLDTAK---DAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK  182 (248)
Q Consensus       131 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~  182 (248)
                      .....|+||++.+.   .++.++|||.||..||..|+....   .||+||+.+..
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~---~CP~Cr~~~~~   63 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK---KCPICRVDIEA   63 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCS---BCTTTCSBSCS
T ss_pred             CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCC---CCcCcCccccC
Confidence            44578999999875   457789999999999999999876   89999999864

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.36  E-value=2.4e-13  Score=102.98  Aligned_cols=62  Identities=16%  Similarity=0.430  Sum_probs=51.0

Q ss_pred             CCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCccccccccccc-CCceeeecCCC
Q psy2200         130 KGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK-DKVIPVYGRGG  193 (248)
Q Consensus       130 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~~~~  193 (248)
                      ..+.+.|+||++.+.+|+.++|||+||..||..|+...  ...||+||..+.. ..+.+++.+..
T Consensus        49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~~~~~n~~l~~  111 (124)
T 3fl2_A           49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQ--VFSCPACRYDLGRSYAMQVNQPLQT  111 (124)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT--CCBCTTTCCBCCTTCCCCCCHHHHH
T ss_pred             CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHC--cCCCCCCCccCCCCCCCCCCHHHHH
Confidence            34567899999999999999999999999999999842  3489999999986 55656555443

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=6.2e-13  Score=91.35  Aligned_cols=50  Identities=32%  Similarity=0.695  Sum_probs=42.4

Q ss_pred             CCCceeecccccccCCc---EEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200         130 KGQIYDCNICLDTAKDA---VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK  182 (248)
Q Consensus       130 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~  182 (248)
                      ......|+||++.+.++   ++++|||.||..||..|++...   .||+||+.+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~---~CP~Cr~~~~~   64 (74)
T 2ep4_A           12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK---VCPLCNMPVLQ   64 (74)
T ss_dssp             CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS---BCTTTCCBCSS
T ss_pred             CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC---cCCCcCccccc
Confidence            44557999999998765   4459999999999999999876   99999998864

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.35  E-value=2.3e-13  Score=105.01  Aligned_cols=48  Identities=31%  Similarity=0.826  Sum_probs=43.7

Q ss_pred             CceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200         132 QIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK  182 (248)
Q Consensus       132 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~  182 (248)
                      +.+.|+||++.+.+|++++|||.||..||..|+....   .||+||..+..
T Consensus        52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~---~CP~Cr~~~~~   99 (138)
T 4ayc_A           52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKI---ECPICRKDIKS   99 (138)
T ss_dssp             HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCS---BCTTTCCBCCC
T ss_pred             ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcCC---cCCCCCCcCCC
Confidence            3468999999999999999999999999999998765   99999999864

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=4e-13  Score=96.89  Aligned_cols=66  Identities=21%  Similarity=0.414  Sum_probs=55.9

Q ss_pred             CCceeecccccccCCcEEcc-CCCccCHhHHHHHHHhC---CCCCcccc--cccc-cccCCceeeecCCCCCC
Q psy2200         131 GQIYDCNICLDTAKDAVISM-CGHLFCWPCLHQWLETC---PNRQTCPV--CKAA-IDKDKVIPVYGRGGSSK  196 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~p~~~~-CgH~fC~~Ci~~~~~~~---~~~~~CP~--Cr~~-~~~~~~~~~~~~~~~~~  196 (248)
                      ...+.|+||++.|.+||+++ |||+||+.||..|+...   .+...||+  |+.. +...++++++.+...+.
T Consensus         5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~   77 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIE   77 (94)
T ss_dssp             SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHH
T ss_pred             CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHH
Confidence            44589999999999999996 99999999999999864   12458999  9887 88889999988776654

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.34  E-value=6.1e-13  Score=85.96  Aligned_cols=46  Identities=30%  Similarity=0.722  Sum_probs=40.8

Q ss_pred             ceeecccccccCC----cEEccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         133 IYDCNICLDTAKD----AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       133 ~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                      ...|+||++.+.+    ++.++|||.||..||..|++...   .||+||+.+.
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~---~CP~Cr~~~~   54 (55)
T 2ecm_A            5 SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY---RCPLCSGPSS   54 (55)
T ss_dssp             CCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTC---CCTTSCCSSC
T ss_pred             CCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCC---cCCCCCCcCC
Confidence            4689999999865    68889999999999999999875   9999998874

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=7.2e-13  Score=91.37  Aligned_cols=49  Identities=27%  Similarity=0.687  Sum_probs=43.0

Q ss_pred             CCceeecccccccCCc---EEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200         131 GQIYDCNICLDTAKDA---VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK  182 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~  182 (248)
                      .+...|+||++.+..+   +.++|||.||..||..|++...   .||+||+.+..
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~---~CP~Cr~~~~~   72 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANR---TCPICRADSGP   72 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCS---SCTTTCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCC---cCcCcCCcCCC
Confidence            3457899999998876   7789999999999999999876   99999998864

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.33  E-value=3.7e-13  Score=99.46  Aligned_cols=51  Identities=31%  Similarity=0.661  Sum_probs=45.9

Q ss_pred             CCCceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCcccccccccccC
Q psy2200         130 KGQIYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD  183 (248)
Q Consensus       130 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~  183 (248)
                      ..+.+.|+||++.+.+|+.+ +|||+||..||..|+....   .||+||..+...
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~---~CP~Cr~~~~~~   63 (108)
T 2ckl_A           12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSK---YCPICDVQVHKT   63 (108)
T ss_dssp             HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCS---BCTTTCCBSCSS
T ss_pred             cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCC---cCcCCCcccccc
Confidence            34568999999999999998 9999999999999998765   999999998865

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.32  E-value=6.9e-13  Score=85.76  Aligned_cols=47  Identities=34%  Similarity=0.838  Sum_probs=41.0

Q ss_pred             CceeecccccccCC---cEEcc-CCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         132 QIYDCNICLDTAKD---AVISM-CGHLFCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       132 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                      +...|+||++.+.+   ++.++ |||.||..|+.+|++...   .||+||+.+.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~---~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS---TCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCC---SCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCC---cCcCCCCEeE
Confidence            44689999999887   67887 999999999999998765   9999998764

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.32  E-value=7.1e-13  Score=100.93  Aligned_cols=58  Identities=34%  Similarity=0.840  Sum_probs=51.9

Q ss_pred             CceeecccccccCCc-------EEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCC
Q psy2200         132 QIYDCNICLDTAKDA-------VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRG  192 (248)
Q Consensus       132 ~~~~C~IC~~~~~~p-------~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~  192 (248)
                      +.+.|+||++.+.++       +.++|||+||..||.+|++...   .||+||+.+...++.++|...
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~---~CP~Cr~~~~~~~l~~l~i~~   70 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN---TCPTCRKKINHKRYHPIYIGS   70 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCS---BCTTTCCBCTTTCEEECBCSS
T ss_pred             CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCC---CCCCCCCcCccccccccccCC
Confidence            457999999999988       9999999999999999998766   999999999999988877543

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.31  E-value=1.2e-12  Score=93.79  Aligned_cols=49  Identities=37%  Similarity=0.777  Sum_probs=42.6

Q ss_pred             CCceeecccccccCC---cEEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200         131 GQIYDCNICLDTAKD---AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK  182 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~  182 (248)
                      .....|+||++.+..   ++.++|||.||..||..|+....   .||+||+.+..
T Consensus        38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~---~CP~Cr~~~~~   89 (91)
T 2l0b_A           38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSG---TCPVCRCMFPP   89 (91)
T ss_dssp             SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTC---BCTTTCCBSSC
T ss_pred             CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCC---cCcCcCccCCC
Confidence            345789999998876   67889999999999999998765   99999998863

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.31  E-value=1.2e-12  Score=98.20  Aligned_cols=65  Identities=26%  Similarity=0.563  Sum_probs=54.4

Q ss_pred             CccCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCC
Q psy2200         126 GENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRG  192 (248)
Q Consensus       126 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~  192 (248)
                      ......+.+.|+||++.+.+|+.++|||+||..||..|+....  ..||+||..+...++.++..+.
T Consensus        11 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~--~~CP~Cr~~~~~~~~~~~~~l~   75 (118)
T 3hct_A           11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG--HKCPVDNEILLENQLFPDNFAK   75 (118)
T ss_dssp             BSSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC--SBCTTTCCBCCGGGCEECHHHH
T ss_pred             hccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCC--CCCCCCCCCcCHHhcccCHHHH
Confidence            3445667789999999999999999999999999999998743  3899999999887777665443

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.31  E-value=2.5e-13  Score=106.33  Aligned_cols=62  Identities=23%  Similarity=0.470  Sum_probs=51.7

Q ss_pred             CCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccC-CceeeecCCCC
Q psy2200         131 GQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD-KVIPVYGRGGS  194 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~-~~~~~~~~~~~  194 (248)
                      .+.+.|+||++.+.+|++++|||+||..||..|+...  ...||+||..+... .+.+++.+...
T Consensus        76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~~l~~n~~l~~l  138 (150)
T 1z6u_A           76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ--VFSCPACRHDLGQNYIMIPNEILQTL  138 (150)
T ss_dssp             HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT--CCBCTTTCCBCCTTCCCCBCHHHHHH
T ss_pred             ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhC--CCcCCCCCccCCCCCCCCCCHHHHHH
Confidence            4567999999999999999999999999999999863  34899999999877 56666554443

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.30  E-value=2.2e-12  Score=87.06  Aligned_cols=46  Identities=35%  Similarity=1.024  Sum_probs=41.7

Q ss_pred             ceeecccccccCCc-EEccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         133 IYDCNICLDTAKDA-VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       133 ~~~C~IC~~~~~~p-~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                      ...|+||++.+.++ +.++|||.||..|+..|++...   .||+||+.+.
T Consensus         5 ~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~---~CP~Cr~~~~   51 (68)
T 1chc_A            5 AERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP---TCPLCKVPVE   51 (68)
T ss_dssp             CCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSC---STTTTCCCCC
T ss_pred             CCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcC---cCcCCChhhH
Confidence            35899999999986 7889999999999999999866   9999999886

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.27  E-value=5.3e-13  Score=99.70  Aligned_cols=51  Identities=25%  Similarity=0.716  Sum_probs=44.5

Q ss_pred             CCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200         130 KGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK  182 (248)
Q Consensus       130 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~  182 (248)
                      ..+.+.|+||++.+.+|+.++|||+||..||..|+...  ...||+||..+..
T Consensus        12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~   62 (115)
T 3l11_A           12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKA--SLCCPFCRRRVSS   62 (115)
T ss_dssp             CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTT--TSBCTTTCCBCHH
T ss_pred             CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHC--cCCCCCCCcccCc
Confidence            34568999999999999999999999999999999752  3489999999863

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.25  E-value=2.3e-12  Score=96.35  Aligned_cols=54  Identities=28%  Similarity=0.602  Sum_probs=47.0

Q ss_pred             CCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCce
Q psy2200         131 GQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVI  186 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~  186 (248)
                      .+.+.|+||++.+.+|+.++|||+||..||..|+....  ..||+||..+...++.
T Consensus        21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~--~~CP~Cr~~~~~~~~~   74 (116)
T 1rmd_A           21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMG--SYCPSCRYPCFPTDLE   74 (116)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC--SBCTTTCCBCCGGGCB
T ss_pred             cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCc--CcCCCCCCCCCHhhcc
Confidence            34679999999999999999999999999999998732  3899999999876654

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.25  E-value=1.7e-12  Score=100.53  Aligned_cols=53  Identities=25%  Similarity=0.526  Sum_probs=46.3

Q ss_pred             cCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200         128 NDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK  182 (248)
Q Consensus       128 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~  182 (248)
                      ....+.+.|+||++.+.+|+.++|||+||..||..|+...  ...||+||..+..
T Consensus        26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~--~~~CP~Cr~~~~~   78 (141)
T 3knv_A           26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSG--PQNCAACVHEGIY   78 (141)
T ss_dssp             GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGS--CEECHHHHHTTCC
T ss_pred             ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcC--CCCCCCCCCcccc
Confidence            4567789999999999999999999999999999999753  3489999997643

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.24  E-value=2.9e-12  Score=109.44  Aligned_cols=64  Identities=13%  Similarity=0.215  Sum_probs=55.8

Q ss_pred             CCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCCC
Q psy2200         130 KGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSS  195 (248)
Q Consensus       130 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~  195 (248)
                      ....+.|+||++.+.+||+++|||+||+.||..|+....  ..||+||.++...+++|+..+...+
T Consensus       205 ~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~--~~cP~~~~~~~~~~l~~n~~l~~~i  268 (281)
T 2c2l_A          205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG--HFNPVTRSPLTQEQLIPNLAMKEVI  268 (281)
T ss_dssp             CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTC--SSCTTTCCCCCGGGCEECHHHHHHH
T ss_pred             CCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCC--CCCcCCCCCCchhcCcccHHHHHHH
Confidence            345689999999999999999999999999999998744  2599999999999999988776554

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.24  E-value=3.2e-12  Score=102.32  Aligned_cols=64  Identities=14%  Similarity=0.218  Sum_probs=56.2

Q ss_pred             CCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCCC
Q psy2200         130 KGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSS  195 (248)
Q Consensus       130 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~  195 (248)
                      ....+.|+||++.|.+||+++|||+||..||..|+...+  .+||+|+.++...+++||+.+...+
T Consensus       103 ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~--~tcP~t~~~l~~~~L~pN~~Lk~~I  166 (179)
T 2f42_A          103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG--HFDPVTRSPLTQDQLIPNLAMKEVI  166 (179)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC--SBCTTTCCBCCGGGCEECHHHHHHH
T ss_pred             CcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCC--CCCCCCcCCCChhhCcchHHHHHHH
Confidence            456799999999999999999999999999999998753  2799999999999999998766543

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.24  E-value=1.6e-12  Score=103.26  Aligned_cols=61  Identities=26%  Similarity=0.549  Sum_probs=48.7

Q ss_pred             CCCceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCccccccccccc-CCceeeecCC
Q psy2200         130 KGQIYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK-DKVIPVYGRG  192 (248)
Q Consensus       130 ~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~-~~~~~~~~~~  192 (248)
                      ....+.|+||++.+.+|+.+ +|||+||..||..|+...  ...||+||..+.. ..+.+++.+.
T Consensus        51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~~l~~~~~l~  113 (165)
T 2ckl_B           51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG--NKECPTCRKKLVSKRSLRPDPNFD  113 (165)
T ss_dssp             CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT--CCBCTTTCCBCCSGGGEEECHHHH
T ss_pred             CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC--cCCCCCCCCcCCCcccCCcCHHHH
Confidence            45568999999999999988 999999999999999962  2489999999853 3444444333

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.23  E-value=7.9e-13  Score=99.12  Aligned_cols=59  Identities=20%  Similarity=0.504  Sum_probs=51.5

Q ss_pred             CCceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCC
Q psy2200         131 GQIYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGS  194 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~  194 (248)
                      .+.+.|+||++.+.+|+.+ +|||+||..||..|+.  .   .||+||..+...++.+++.+...
T Consensus        20 ~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~---~CP~Cr~~~~~~~~~~n~~l~~l   79 (117)
T 1jm7_B           20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--T---GCPVCYTPAWIQDLKINRQLDSM   79 (117)
T ss_dssp             HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--T---BCSSSCCBCSCSSCCCCHHHHHH
T ss_pred             hhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--C---CCcCCCCcCccccccccHHHHHH
Confidence            4568999999999999999 9999999999999987  3   89999999988888777766544

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.21  E-value=8.2e-12  Score=92.93  Aligned_cols=50  Identities=28%  Similarity=0.602  Sum_probs=40.4

Q ss_pred             eeecccccccCCcE------------------EccCCCccCHhHHHHHHHhCC--CCCcccccccccccC
Q psy2200         134 YDCNICLDTAKDAV------------------ISMCGHLFCWPCLHQWLETCP--NRQTCPVCKAAIDKD  183 (248)
Q Consensus       134 ~~C~IC~~~~~~p~------------------~~~CgH~fC~~Ci~~~~~~~~--~~~~CP~Cr~~~~~~  183 (248)
                      ..|+||++.+.++.                  +++|||.||..||..|+....  ....||+||+.+...
T Consensus        26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T 1v87_A           26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence            58999999987654                  789999999999999996421  245999999988643

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=8.6e-12  Score=87.33  Aligned_cols=48  Identities=27%  Similarity=0.639  Sum_probs=39.7

Q ss_pred             ceeecccccccCC--------------cEEc-cCCCccCHhHHHHHHHhCCCCCcccccccccccC
Q psy2200         133 IYDCNICLDTAKD--------------AVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD  183 (248)
Q Consensus       133 ~~~C~IC~~~~~~--------------p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~  183 (248)
                      ...|+||++.+.+              ++.+ +|||.||..||.+|+..+.   +||+||+.+...
T Consensus        15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~---~CP~CR~~~~~~   77 (81)
T 2ecl_A           15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN---RCPLCQQDWVVQ   77 (81)
T ss_dssp             CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC---BCTTTCCBCCEE
T ss_pred             CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC---CCCCcCCCcchh
Confidence            3579999998865              4455 5999999999999999876   999999988643

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.18  E-value=1.4e-11  Score=85.53  Aligned_cols=54  Identities=24%  Similarity=0.607  Sum_probs=42.8

Q ss_pred             CCCceeecccccccC--CcEEcc--CCCccCHhHHHHHHHhCCCCCcccccccccccCCc
Q psy2200         130 KGQIYDCNICLDTAK--DAVISM--CGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV  185 (248)
Q Consensus       130 ~~~~~~C~IC~~~~~--~p~~~~--CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~  185 (248)
                      ..+.+.|+||++.+.  ++++++  |||.||..|+..++...  ...||+||+.+....+
T Consensus         8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~--~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE--NGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSS--CSBCTTTCCBCSSCSS
T ss_pred             cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcC--CCCCCCCCCccCCCch
Confidence            345689999999874  445555  99999999999988642  3599999999987654

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.18  E-value=3.1e-12  Score=83.24  Aligned_cols=46  Identities=30%  Similarity=0.590  Sum_probs=39.8

Q ss_pred             CCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200         131 GQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK  182 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~  182 (248)
                      .+.+.|+||++.+.+|++++|||+||..|+..|      ...||+||+.+..
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~------~~~CP~Cr~~~~~   49 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS------GMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS------SSSCSSCCSSSSC
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHccC------CCCCCcCCcEeec
Confidence            345789999999999999999999999998772      3489999998864

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.17  E-value=9.4e-12  Score=83.18  Aligned_cols=52  Identities=33%  Similarity=0.774  Sum_probs=45.2

Q ss_pred             ceeecccccccCCcEEc--cCCCc-cCHhHHHHHHHhCCCCCcccccccccccCCceeee
Q psy2200         133 IYDCNICLDTAKDAVIS--MCGHL-FCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY  189 (248)
Q Consensus       133 ~~~C~IC~~~~~~p~~~--~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~  189 (248)
                      ...|.||++...+++++  +|||. ||..|+..|++...   .||+||+.+.  .++++|
T Consensus         8 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~---~CPiCR~~i~--~~i~i~   62 (64)
T 2vje_A            8 IEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNK---PCPVCRQPIQ--MIVLTY   62 (64)
T ss_dssp             GSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTC---CCTTTCCCCC--EEEEEE
T ss_pred             cCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCC---cCCCcCcchh--ceEeee
Confidence            45899999999999987  99999 89999999998655   8999999985  566666

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=99.16  E-value=1.1e-11  Score=82.61  Aligned_cols=52  Identities=33%  Similarity=0.797  Sum_probs=45.0

Q ss_pred             ceeecccccccCCcEEc--cCCCc-cCHhHHHHHHHhCCCCCcccccccccccCCceeee
Q psy2200         133 IYDCNICLDTAKDAVIS--MCGHL-FCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY  189 (248)
Q Consensus       133 ~~~C~IC~~~~~~p~~~--~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~  189 (248)
                      ...|.||++...+++++  +|||. ||..|+..|.+...   .||+||+.+.  .++.+|
T Consensus         7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~---~CPiCR~~i~--~~i~i~   61 (63)
T 2vje_B            7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGA---SCPICKKEIQ--LVIKVF   61 (63)
T ss_dssp             GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTC---BCTTTCCBCC--EEEEEE
T ss_pred             CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCC---cCCCcCchhh--ceEEEe
Confidence            35899999999999887  99998 99999999998754   9999999985  556665

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.15  E-value=1.8e-11  Score=97.60  Aligned_cols=65  Identities=26%  Similarity=0.563  Sum_probs=54.2

Q ss_pred             CccCCCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCC
Q psy2200         126 GENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRG  192 (248)
Q Consensus       126 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~  192 (248)
                      ......+.+.|+||++.+.+|+.++|||+||..||..|+....  ..||+||..+...++.++..+.
T Consensus        11 ~~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~--~~CP~Cr~~~~~~~~~~~~~~~   75 (170)
T 3hcs_A           11 FDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG--HKCPVDNEILLENQLFPDNFAK   75 (170)
T ss_dssp             ESSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC--SBCTTTCCBCCGGGCEECHHHH
T ss_pred             hccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCC--CCCCCCccCcchhhhhhhHHHH
Confidence            3445677899999999999999999999999999999998642  3899999999887776654433

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=7.5e-11  Score=79.71  Aligned_cols=50  Identities=24%  Similarity=0.632  Sum_probs=41.5

Q ss_pred             CCceeecccccccCCcEEccCCCc-cCHhHHHHHHHhCCCCCcccccccccccCCceeee
Q psy2200         131 GQIYDCNICLDTAKDAVISMCGHL-FCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY  189 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~  189 (248)
                      .+...|.||++...+++++||||. ||..|+..       ...||+||..|..  .+.+|
T Consensus        13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-------~~~CP~CR~~i~~--~~~i~   63 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-------FQQCPMCRQFVQE--SFALS   63 (68)
T ss_dssp             CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-------CSSCTTTCCCCCC--EECCC
T ss_pred             CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-------CCCCCCCCcchhc--eEEee
Confidence            445789999999999999999999 99999983       2389999999873  44444

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=5.6e-12  Score=86.94  Aligned_cols=46  Identities=33%  Similarity=0.699  Sum_probs=39.6

Q ss_pred             CCCceeecccccccCCcEEccCCCc-cCHhHHHHHHHhCCCCCccccccccccc
Q psy2200         130 KGQIYDCNICLDTAKDAVISMCGHL-FCWPCLHQWLETCPNRQTCPVCKAAIDK  182 (248)
Q Consensus       130 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~  182 (248)
                      ..+...|+||++.+.+++.++|||. ||..|+...       ..||+||..+..
T Consensus        22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-------~~CP~Cr~~i~~   68 (75)
T 2ecg_A           22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-------DKCPMCYTVITF   68 (75)
T ss_dssp             HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-------SBCTTTCCBCCC
T ss_pred             CCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-------CCCccCCceecC
Confidence            3456789999999999999999999 999999642       389999999864

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.11  E-value=1.6e-11  Score=84.39  Aligned_cols=46  Identities=33%  Similarity=0.688  Sum_probs=40.7

Q ss_pred             CCCceeecccccccCCcEEccCCCc-cCHhHHHHHHHhCCCCCccccccccccc
Q psy2200         130 KGQIYDCNICLDTAKDAVISMCGHL-FCWPCLHQWLETCPNRQTCPVCKAAIDK  182 (248)
Q Consensus       130 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~  182 (248)
                      ..+...|+||++.+.+++.++|||. ||..|+..|    .   .||+||+.+..
T Consensus        21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~---~CP~Cr~~i~~   67 (74)
T 4ic3_A           21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----D---KCPMCYTVITF   67 (74)
T ss_dssp             HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----S---BCTTTCCBCSE
T ss_pred             CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----c---cCCCcCcCccC
Confidence            3445789999999999999999999 999999988    2   89999999873

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=99.11  E-value=2.6e-11  Score=80.18  Aligned_cols=55  Identities=15%  Similarity=0.292  Sum_probs=50.4

Q ss_pred             ceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeec
Q psy2200         133 IYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYG  190 (248)
Q Consensus       133 ~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~  190 (248)
                      .+.|+|+++.+.+||++ ++||+|++.||.+|++.+.   +||+++.++..++++++..
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~---~cP~t~~~L~~~~Lip~~~   58 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG---NDPITNEPLSIEEIVEIVP   58 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS---BCTTTCCBCCGGGCEECCC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCC---CCcCCcCCCChhhcEECcc
Confidence            37899999999999999 9999999999999999765   7999999999999998764

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.09  E-value=3.3e-11  Score=101.20  Aligned_cols=65  Identities=17%  Similarity=0.318  Sum_probs=55.9

Q ss_pred             CCCCceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCcccc--cccccccCCceeeecCCCC
Q psy2200         129 DKGQIYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPV--CKAAIDKDKVIPVYGRGGS  194 (248)
Q Consensus       129 ~~~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~--Cr~~~~~~~~~~~~~~~~~  194 (248)
                      .....+.||||+++|.+||.. .|||+||+.||..|+.... ...||+  |++.+...++.++..+...
T Consensus       177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~-~~~CPvtGCr~~l~~~dL~pN~~L~~l  244 (267)
T 3htk_C          177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYT-TRDCPQAACSQVVSMRDFVRDPIMELR  244 (267)
T ss_dssp             SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCS-CEECSGGGCSCEECGGGEEECHHHHHH
T ss_pred             CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCC-CCCCCcccccCcCchhhCCcCHHHHHH
Confidence            345678999999999999985 9999999999999998642 468999  9999999999988776544

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.05  E-value=9.9e-11  Score=86.03  Aligned_cols=45  Identities=29%  Similarity=0.787  Sum_probs=39.0

Q ss_pred             eeecccccccCCc------------------EEccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         134 YDCNICLDTAKDA------------------VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       134 ~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                      ..|+||++.+.++                  +.++|||.||..||..|+..+.   +||+||+.+.
T Consensus        38 d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~---~CP~Cr~~~~  100 (106)
T 3dpl_R           38 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ---VCPLDNREWE  100 (106)
T ss_dssp             CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCS---BCSSSCSBCC
T ss_pred             CCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCC---cCcCCCCcce
Confidence            5799999988754                  4569999999999999999866   9999999864

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=99.02  E-value=1e-10  Score=103.83  Aligned_cols=52  Identities=38%  Similarity=0.887  Sum_probs=44.7

Q ss_pred             CceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCc
Q psy2200         132 QIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV  185 (248)
Q Consensus       132 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~  185 (248)
                      ....|+||++.+.+++.++|||.||..|+..|+...  ...||+||..+....+
T Consensus       331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~--~~~CP~CR~~i~~~~~  382 (389)
T 2y1n_A          331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE--GQGCPFCRCEIKGTEP  382 (389)
T ss_dssp             SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHT--CSBCTTTCCBCCEEEE
T ss_pred             CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcC--CCCCCCCCCccCCcee
Confidence            346899999999999999999999999999999842  2399999999876543

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.97  E-value=8e-10  Score=76.99  Aligned_cols=50  Identities=26%  Similarity=0.653  Sum_probs=41.4

Q ss_pred             ceeecccccccC--CcEEccCC-----CccCHhHHHHHHHhCCCCCcccccccccccC
Q psy2200         133 IYDCNICLDTAK--DAVISMCG-----HLFCWPCLHQWLETCPNRQTCPVCKAAIDKD  183 (248)
Q Consensus       133 ~~~C~IC~~~~~--~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~  183 (248)
                      ...|.||++.+.  ++++++|+     |.||..||.+|+.... ..+||+||..+..+
T Consensus        15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~-~~~CplCr~~~~~~   71 (80)
T 2d8s_A           15 QDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD-TRCCELCKYEFIME   71 (80)
T ss_dssp             SCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC-CSBCSSSCCBCCCC
T ss_pred             CCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC-CCCCCCCCCeeecC
Confidence            458999998774  57888996     9999999999998753 35899999998643

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.87  E-value=6.2e-10  Score=77.40  Aligned_cols=51  Identities=31%  Similarity=0.762  Sum_probs=42.5

Q ss_pred             CCceeecccccccCCcEEccCCCc-cCHhHHHHHHHhCCCCCcccccccccccCCceeeec
Q psy2200         131 GQIYDCNICLDTAKDAVISMCGHL-FCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYG  190 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~  190 (248)
                      .+...|.||++.+.+++.++|||. ||..|+..|       ..||+||..+..  .+.+|.
T Consensus        16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-------~~CP~Cr~~i~~--~~~i~~   67 (79)
T 2yho_A           16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-------QSCPVCRSRVEH--VQHVYL   67 (79)
T ss_dssp             HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-------SBCTTTCCBCCE--EEECBC
T ss_pred             CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-------CcCCCCCchhhC--eEEEEe
Confidence            344689999999999999999999 999999865       289999999874  455554

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.84  E-value=3.7e-10  Score=84.23  Aligned_cols=45  Identities=29%  Similarity=0.787  Sum_probs=0.0

Q ss_pred             eeecccccccCCc------------------EEccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         134 YDCNICLDTAKDA------------------VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       134 ~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                      ..|+||++.+.++                  +.++|||.||..||..|+..+.   .||+||+.+.
T Consensus        49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~---~CP~Cr~~~~  111 (117)
T 4a0k_B           49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ---VCPLDNREWE  111 (117)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCC---cCCCCCCeee
Confidence            5899999988753                  2248999999999999999866   9999999865

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=98.78  E-value=2.5e-09  Score=73.22  Aligned_cols=52  Identities=19%  Similarity=0.162  Sum_probs=39.8

Q ss_pred             CCCCCCCCceeccccCCCCCCceEec-cCccc-ccceeccccCCCCCCCCCCCC
Q psy2200          26 DGGNDKSQIYDCNICFDTAKDAVISM-CGHLF-WLKFFYWPGRGGSEIDPRDEV   77 (248)
Q Consensus        26 ~~~~~~~~~~~C~iCld~~~~~v~~~-CGH~f-~~cv~~~y~Rg~~~~~p~~~~   77 (248)
                      .+.++....+.|+||++.+.+||+++ |||.| ..|+..|+...+...+|....
T Consensus         7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~   60 (74)
T 2yur_A            7 GEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ   60 (74)
T ss_dssp             SCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCC
T ss_pred             cccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCC
Confidence            34555677899999999999999999 99999 557778876544456665433

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=1.8e-08  Score=68.80  Aligned_cols=49  Identities=22%  Similarity=0.589  Sum_probs=40.3

Q ss_pred             CceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         132 QIYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       132 ~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                      ....|.||++.+.....- .|+|.|+..||.+|++.+. ..+||+||..+.
T Consensus        14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~-~~~CP~Cr~~w~   63 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA-EPRCPHCNDYWP   63 (74)
T ss_dssp             SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCS-SCCCTTTCSCCC
T ss_pred             CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcC-CCCCCCCcCcCC
Confidence            345899999998765544 7999999999999998763 349999998765

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.70  E-value=9.5e-09  Score=67.88  Aligned_cols=38  Identities=26%  Similarity=0.351  Sum_probs=32.2

Q ss_pred             CCCCCCceeccccCCCCCCceEeccCccc-ccceecccc
Q psy2200          28 GNDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPG   65 (248)
Q Consensus        28 ~~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~   65 (248)
                      .+.....+.|+||++.+.+|++++|||.| ..|+..|+.
T Consensus        14 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~   52 (63)
T 2ysj_A           14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGE   52 (63)
T ss_dssp             CCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHH
T ss_pred             HHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHH
Confidence            34566789999999999999999999999 557777865

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.69  E-value=8.4e-09  Score=66.80  Aligned_cols=39  Identities=26%  Similarity=0.478  Sum_probs=32.2

Q ss_pred             CCCCCCCceeccccCCCCCCceEeccCccc-ccceecccc
Q psy2200          27 GGNDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPG   65 (248)
Q Consensus        27 ~~~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~   65 (248)
                      ..+.....+.|+||++.+.+|++++|||+| ..|+..|+.
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~   47 (58)
T 2ecj_A            8 ALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWE   47 (58)
T ss_dssp             CSSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTT
T ss_pred             HhhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHH
Confidence            344556679999999999999999999999 557777754

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.66  E-value=1.7e-08  Score=68.37  Aligned_cols=42  Identities=24%  Similarity=0.347  Sum_probs=33.7

Q ss_pred             CCCceeccccCCCCCCceEeccCccc-ccceeccccCCCCCCCCC
Q psy2200          31 KSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGGSEIDPR   74 (248)
Q Consensus        31 ~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~   74 (248)
                      ....++|+||++.+.+|+.++|||.| ..|+..|+...  ..+|.
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~--~~CP~   54 (71)
T 2d8t_A           12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG--KRCAL   54 (71)
T ss_dssp             SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS--SBCSS
T ss_pred             CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC--CcCcC
Confidence            35578999999999999999999999 56777887654  34444

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.65  E-value=4.1e-09  Score=92.82  Aligned_cols=45  Identities=31%  Similarity=0.834  Sum_probs=40.5

Q ss_pred             CCCceeecccccccCCcEEccCCCc-cCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         130 KGQIYDCNICLDTAKDAVISMCGHL-FCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       130 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                      ..+...|+||++.+.+++.++|||. ||..|+..|    .   .||+||..+.
T Consensus       292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~---~CP~CR~~i~  337 (345)
T 3t6p_A          292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----R---KCPICRGIIK  337 (345)
T ss_dssp             HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----S---BCTTTCCBCC
T ss_pred             CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----C---cCCCCCCCcc
Confidence            3456899999999999999999999 999999877    2   8999999986

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.65  E-value=4.5e-08  Score=66.44  Aligned_cols=50  Identities=24%  Similarity=0.240  Sum_probs=37.6

Q ss_pred             CCCCCCceeccccCCCCCCceEeccCccc-ccceeccccC-CCCCCCCCCCC
Q psy2200          28 GNDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGR-GGSEIDPRDEV   77 (248)
Q Consensus        28 ~~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~R-g~~~~~p~~~~   77 (248)
                      .+.....+.|+||++.+.+|++++|||.| ..|+..|+.. +....+|....
T Consensus        14 ~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~   65 (73)
T 2ysl_A           14 VNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKT   65 (73)
T ss_dssp             CCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCC
T ss_pred             HHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCC
Confidence            34556789999999999999999999999 5577778753 23355665433

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.63  E-value=4e-09  Score=75.60  Aligned_cols=54  Identities=24%  Similarity=0.666  Sum_probs=41.8

Q ss_pred             CceeecccccccCCcEEc---cCCCccCHhHHHHHHHhC---C--CCCcccc--cccc--cccCCc
Q psy2200         132 QIYDCNICLDTAKDAVIS---MCGHLFCWPCLHQWLETC---P--NRQTCPV--CKAA--IDKDKV  185 (248)
Q Consensus       132 ~~~~C~IC~~~~~~p~~~---~CgH~fC~~Ci~~~~~~~---~--~~~~CP~--Cr~~--~~~~~~  185 (248)
                      +.+.|+||++.+..++.+   +|||.||..|+..++...   +  ....||.  |+..  +....+
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i   69 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI   69 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH
Confidence            357899999998877544   799999999999998752   1  1358999  9988  654433

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.63  E-value=1.8e-08  Score=67.17  Aligned_cols=48  Identities=17%  Similarity=0.109  Sum_probs=36.3

Q ss_pred             CCCCCCCceeccccCCCCCCceEeccCccc-ccceeccccCCCCCCCCCC
Q psy2200          27 GGNDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGGSEIDPRD   75 (248)
Q Consensus        27 ~~~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~   75 (248)
                      ..+.....+.|+||++.+.+|+.++|||.| ..|+..|+.+ ....+|..
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~C   56 (66)
T 2ecy_A            8 FVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSS-SSPKCTAC   56 (66)
T ss_dssp             SCCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTT-SSCCCTTT
T ss_pred             hhhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHh-CcCCCCCC
Confidence            344556789999999999999999999999 5577778742 23455544

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.62  E-value=8.9e-09  Score=73.31  Aligned_cols=52  Identities=19%  Similarity=0.174  Sum_probs=40.2

Q ss_pred             CCCCCCCceeccccCCCCCCceEec-cCccccc-ceeccccCCCCCCCCCCCCC
Q psy2200          27 GGNDKSQIYDCNICFDTAKDAVISM-CGHLFWL-KFFYWPGRGGSEIDPRDEVP   78 (248)
Q Consensus        27 ~~~~~~~~~~C~iCld~~~~~v~~~-CGH~f~~-cv~~~y~Rg~~~~~p~~~~p   78 (248)
                      +.+.....|.|+||++.+.+||+++ |||+||. |+..|+...+...+|....+
T Consensus         6 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~   59 (92)
T 3ztg_A            6 EDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQN   59 (92)
T ss_dssp             SCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCS
T ss_pred             ccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCc
Confidence            3445677899999999999999999 9999954 77778765545677765443

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.58  E-value=4.7e-08  Score=70.65  Aligned_cols=47  Identities=15%  Similarity=0.011  Sum_probs=36.6

Q ss_pred             CCCCceeccccCCCCCCceEeccC-ccccc-ceeccccCCCCCCCCCCCCC
Q psy2200          30 DKSQIYDCNICFDTAKDAVISMCG-HLFWL-KFFYWPGRGGSEIDPRDEVP   78 (248)
Q Consensus        30 ~~~~~~~C~iCld~~~~~v~~~CG-H~f~~-cv~~~y~Rg~~~~~p~~~~p   78 (248)
                      +....|.|+||+++++|||+++|| |+|+. |+..|+..  ...+|.+..+
T Consensus        18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~--~~~cP~~~~~   66 (98)
T 1wgm_A           18 DACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS--DQTDPFNRSP   66 (98)
T ss_dssp             SCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT--SCBCTTTCSB
T ss_pred             cCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh--CCCCCCCCCC
Confidence            456689999999999999999999 99954 66677654  3467765543

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.57  E-value=4e-08  Score=68.44  Aligned_cols=50  Identities=22%  Similarity=0.258  Sum_probs=37.0

Q ss_pred             CCCCCCceeccccCCCCCCceEeccCccc-ccceeccccCC----CCCCCCCCCC
Q psy2200          28 GNDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRG----GSEIDPRDEV   77 (248)
Q Consensus        28 ~~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg----~~~~~p~~~~   77 (248)
                      .++....+.|+||++.+.+|++++|||.| ..|+..|+...    ....+|....
T Consensus        13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~   67 (85)
T 2ecw_A           13 LEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRV   67 (85)
T ss_dssp             CCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCC
T ss_pred             HHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCC
Confidence            34456679999999999999999999999 45676776542    2455665433

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.56  E-value=2e-08  Score=69.78  Aligned_cols=47  Identities=15%  Similarity=0.220  Sum_probs=35.8

Q ss_pred             CCCCCCceeccccCCCCCCceEeccCccc-ccceeccccCCCCCCCCCCC
Q psy2200          28 GNDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGGSEIDPRDE   76 (248)
Q Consensus        28 ~~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~~   76 (248)
                      .++....+.|+||++.+.+|++++|||.| ..|+..|+..  ...+|...
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr   56 (81)
T 2csy_A            9 SEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA--TPRCYICD   56 (81)
T ss_dssp             SSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH--CSBCSSSC
T ss_pred             cccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC--CCcCCCcC
Confidence            34456679999999999999999999999 5577788754  23455443

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.55  E-value=4.5e-08  Score=67.44  Aligned_cols=49  Identities=16%  Similarity=0.280  Sum_probs=36.7

Q ss_pred             CCCCCCceeccccCCCCCCceEeccCccc-ccceeccccCC-----CCCCCCCCC
Q psy2200          28 GNDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRG-----GSEIDPRDE   76 (248)
Q Consensus        28 ~~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg-----~~~~~p~~~   76 (248)
                      .+.....+.|+||++.+.+|++++|||.| ..|+..|+...     ....+|...
T Consensus         6 ~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr   60 (79)
T 2egp_A            6 SGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCG   60 (79)
T ss_dssp             SCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSC
T ss_pred             HhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCC
Confidence            34456689999999999999999999999 45677776542     234556543

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.54  E-value=8.7e-08  Score=66.70  Aligned_cols=49  Identities=18%  Similarity=0.253  Sum_probs=36.5

Q ss_pred             CCCCCCceeccccCCCCCCceEeccCccc-ccceeccccC----CCCCCCCCCC
Q psy2200          28 GNDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGR----GGSEIDPRDE   76 (248)
Q Consensus        28 ~~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~R----g~~~~~p~~~   76 (248)
                      .++....+.|+||++.+.+|+.++|||.| ..|+..|+..    ++...+|...
T Consensus        13 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr   66 (85)
T 2ecv_A           13 LVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCR   66 (85)
T ss_dssp             CCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTC
T ss_pred             HHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCC
Confidence            34556679999999999999999999999 4566677554    2345566543

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=98.53  E-value=3.3e-08  Score=68.08  Aligned_cols=48  Identities=21%  Similarity=0.452  Sum_probs=37.0

Q ss_pred             CCCCCceeccccCCCCCCceEeccCccc-ccceeccccCCCCCCCCCCCC
Q psy2200          29 NDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGGSEIDPRDEV   77 (248)
Q Consensus        29 ~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~~~   77 (248)
                      .+....|.|+||++++.+||+++|||+| ..|+..|+..+ ...+|....
T Consensus         3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~-~~~CP~C~~   51 (78)
T 1t1h_A            3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG-HKTCPKSQE   51 (78)
T ss_dssp             CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT-CCBCTTTCC
T ss_pred             cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHC-cCCCCCCcC
Confidence            3456789999999999999999999999 55777787642 455665443

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.53  E-value=5.6e-08  Score=65.96  Aligned_cols=48  Identities=19%  Similarity=0.126  Sum_probs=36.5

Q ss_pred             CCCCCCCCceeccccCCCCCCceEe-ccCccc-ccceeccccCCCCCCCCCC
Q psy2200          26 DGGNDKSQIYDCNICFDTAKDAVIS-MCGHLF-WLKFFYWPGRGGSEIDPRD   75 (248)
Q Consensus        26 ~~~~~~~~~~~C~iCld~~~~~v~~-~CGH~f-~~cv~~~y~Rg~~~~~p~~   75 (248)
                      .+.++....+.|+||++.+.+|+++ +|||.| ..|+..|+...  ..+|..
T Consensus         7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~--~~CP~C   56 (72)
T 2djb_A            7 GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS--NRCPKC   56 (72)
T ss_dssp             CCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC--SSCTTT
T ss_pred             hhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC--CcCCCc
Confidence            3445567789999999999999997 999999 45777887542  345543

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.44  E-value=9e-08  Score=69.40  Aligned_cols=49  Identities=14%  Similarity=0.031  Sum_probs=37.4

Q ss_pred             CCCCCCceeccccCCCCCCceEeccCccccc-ceeccccCCCCCCCCCCCCC
Q psy2200          28 GNDKSQIYDCNICFDTAKDAVISMCGHLFWL-KFFYWPGRGGSEIDPRDEVP   78 (248)
Q Consensus        28 ~~~~~~~~~C~iCld~~~~~v~~~CGH~f~~-cv~~~y~Rg~~~~~p~~~~p   78 (248)
                      ..+....|.|+||++++.|||+++|||+|+. |+..|+..  ...||.+..+
T Consensus        23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~   72 (100)
T 2kre_A           23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN--SPTDPFNRQT   72 (100)
T ss_dssp             CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS--CSBCSSSCCB
T ss_pred             hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc--CCCCCCCCCC
Confidence            3445678999999999999999999999944 56667653  3567765544

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.42  E-value=6.4e-08  Score=68.04  Aligned_cols=46  Identities=15%  Similarity=0.048  Sum_probs=35.5

Q ss_pred             CCCCceeccccCCCCCCceEeccCcccc-cceeccccCCCCCCCCCCCC
Q psy2200          30 DKSQIYDCNICFDTAKDAVISMCGHLFW-LKFFYWPGRGGSEIDPRDEV   77 (248)
Q Consensus        30 ~~~~~~~C~iCld~~~~~v~~~CGH~f~-~cv~~~y~Rg~~~~~p~~~~   77 (248)
                      +....|.|+||+++++|||+++|||+|+ .|+..|+..  ...+|.+..
T Consensus        10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~--~~~cP~~~~   56 (85)
T 2kr4_A           10 DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN--SPTDPFNRQ   56 (85)
T ss_dssp             TCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH--CSBCTTTCC
T ss_pred             cCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc--CCCCCCCcC
Confidence            4566899999999999999999999994 466667653  345665543

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.41  E-value=6.3e-08  Score=64.78  Aligned_cols=45  Identities=24%  Similarity=0.334  Sum_probs=33.9

Q ss_pred             CCCCCceeccccCCCCCCc-------eEeccCccc-ccceeccccCCCCCCCCCC
Q psy2200          29 NDKSQIYDCNICFDTAKDA-------VISMCGHLF-WLKFFYWPGRGGSEIDPRD   75 (248)
Q Consensus        29 ~~~~~~~~C~iCld~~~~~-------v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~   75 (248)
                      ......+.|+||++.+.++       ++++|||.| ..|+..|+...  ..+|..
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~C   62 (69)
T 2ea6_A           10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTC   62 (69)
T ss_dssp             CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC--SSCTTT
T ss_pred             cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC--CCCCCC
Confidence            3345678999999999987       899999999 56777787642  345543

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.41  E-value=1.1e-07  Score=68.13  Aligned_cols=44  Identities=20%  Similarity=0.267  Sum_probs=34.0

Q ss_pred             CCceeccccCCCCCCceEec-cCccccc-ceeccccCC----CCCCCCCC
Q psy2200          32 SQIYDCNICFDTAKDAVISM-CGHLFWL-KFFYWPGRG----GSEIDPRD   75 (248)
Q Consensus        32 ~~~~~C~iCld~~~~~v~~~-CGH~f~~-cv~~~y~Rg----~~~~~p~~   75 (248)
                      ...|.|+||++++.+||+++ |||+|+. |+..|+..+    +...+|..
T Consensus         5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~t   54 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQI   54 (94)
T ss_dssp             SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCST
T ss_pred             CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcC
Confidence            55799999999999999996 9999954 666776543    23566653

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.40  E-value=4.5e-07  Score=62.26  Aligned_cols=46  Identities=17%  Similarity=0.261  Sum_probs=33.6

Q ss_pred             CCCCCCceeccccCCCCCCc---eEeccCccc-ccceeccccCCCCCCCCCC
Q psy2200          28 GNDKSQIYDCNICFDTAKDA---VISMCGHLF-WLKFFYWPGRGGSEIDPRD   75 (248)
Q Consensus        28 ~~~~~~~~~C~iCld~~~~~---v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~   75 (248)
                      .+.....++|+||++.+.++   ++++|||.| ..|+..|+.+.  ..+|..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--~~CP~C   58 (78)
T 2ect_A            9 EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH--DSCPVC   58 (78)
T ss_dssp             CTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT--CSCTTT
T ss_pred             cccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC--CcCcCc
Confidence            33445678999999998765   557999999 66888887654  355543

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.38  E-value=2.1e-07  Score=65.27  Aligned_cols=51  Identities=14%  Similarity=0.250  Sum_probs=37.6

Q ss_pred             CCCCCCCceeccccCCCCCC----ceEeccCccc-ccceeccccCC-CCCCCCCCCC
Q psy2200          27 GGNDKSQIYDCNICFDTAKD----AVISMCGHLF-WLKFFYWPGRG-GSEIDPRDEV   77 (248)
Q Consensus        27 ~~~~~~~~~~C~iCld~~~~----~v~~~CGH~f-~~cv~~~y~Rg-~~~~~p~~~~   77 (248)
                      ..+.....++|+||++.+.+    |++++|||.| ..|+..|+... ....+|....
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~   64 (88)
T 2ct2_A            8 NLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSK   64 (88)
T ss_dssp             SCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCC
T ss_pred             ChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCC
Confidence            34455667999999999999    9999999999 55777776543 2355665443

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.34  E-value=3.6e-07  Score=59.84  Aligned_cols=50  Identities=22%  Similarity=0.599  Sum_probs=39.8

Q ss_pred             CceeecccccccCCcEEccCC--C---ccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200         132 QIYDCNICLDTAKDAVISMCG--H---LFCWPCLHQWLETCPNRQTCPVCKAAIDK  182 (248)
Q Consensus       132 ~~~~C~IC~~~~~~p~~~~Cg--H---~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~  182 (248)
                      +...|.||++...++.++||.  |   .|+..|+.+|+.... ...||+|+..+..
T Consensus         5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~-~~~C~~C~~~~~~   59 (60)
T 1vyx_A            5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR-NTACQICGVVYNT   59 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT-CSBCTTTCCBCCC
T ss_pred             CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCC-CCccCCCCCeeec
Confidence            345899999887777778865  4   799999999998643 4599999998753

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.32  E-value=8.6e-08  Score=73.88  Aligned_cols=38  Identities=16%  Similarity=0.366  Sum_probs=31.8

Q ss_pred             CCCCCceeccccCCCCCCceEeccCcccc-cceeccccC
Q psy2200          29 NDKSQIYDCNICFDTAKDAVISMCGHLFW-LKFFYWPGR   66 (248)
Q Consensus        29 ~~~~~~~~C~iCld~~~~~v~~~CGH~f~-~cv~~~y~R   66 (248)
                      +.....|.|+||++++.+||.++|||.|| .|+..|+..
T Consensus        26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~   64 (141)
T 3knv_A           26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSS   64 (141)
T ss_dssp             GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGG
T ss_pred             ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhc
Confidence            45677899999999999999999999994 467777643

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.32  E-value=2.1e-07  Score=68.96  Aligned_cols=46  Identities=20%  Similarity=0.217  Sum_probs=35.3

Q ss_pred             CCCceeccccCCCCCCceEeccCccc-ccceeccccCCCCCCCCCCCC
Q psy2200          31 KSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGGSEIDPRDEV   77 (248)
Q Consensus        31 ~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~~~   77 (248)
                      ....|.|+||++.+.+||+++|||+| ..|+..|+..+ ...+|....
T Consensus        12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~   58 (115)
T 3l11_A           12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKA-SLCCPFCRR   58 (115)
T ss_dssp             CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTT-TSBCTTTCC
T ss_pred             CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHC-cCCCCCCCc
Confidence            35579999999999999999999999 45677777543 355665443

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.26  E-value=5.5e-07  Score=60.49  Aligned_cols=37  Identities=27%  Similarity=0.504  Sum_probs=30.8

Q ss_pred             CCCCCCceeccccCCCCCCceEeccCccc-ccceecccc
Q psy2200          28 GNDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPG   65 (248)
Q Consensus        28 ~~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~   65 (248)
                      .++....+.|+||++.+.+ ++++|||.| ..|+..|+.
T Consensus         9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~   46 (70)
T 2ecn_A            9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD   46 (70)
T ss_dssp             CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC
T ss_pred             hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH
Confidence            3445667999999999999 999999999 557778866

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=98.26  E-value=8.4e-08  Score=69.46  Aligned_cols=46  Identities=20%  Similarity=0.475  Sum_probs=35.5

Q ss_pred             CCCceeccccCCCCCCceE-eccCccc-ccceeccccCCCCCCCCCCCC
Q psy2200          31 KSQIYDCNICFDTAKDAVI-SMCGHLF-WLKFFYWPGRGGSEIDPRDEV   77 (248)
Q Consensus        31 ~~~~~~C~iCld~~~~~v~-~~CGH~f-~~cv~~~y~Rg~~~~~p~~~~   77 (248)
                      ....+.|+||++.+.+||. ++|||.| ..|+..|+.... ..+|....
T Consensus        19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~-~~CP~Cr~   66 (100)
T 3lrq_A           19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR-AQCPHCRA   66 (100)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC-SBCTTTCC
T ss_pred             CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc-CCCCCCCC
Confidence            4456899999999999999 9999999 557777876542 45565443

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=98.24  E-value=2.3e-07  Score=71.12  Aligned_cols=42  Identities=26%  Similarity=0.322  Sum_probs=33.2

Q ss_pred             CceeccccCCCCCCceEeccCccc-ccceeccccCCCCCCCCCCC
Q psy2200          33 QIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGGSEIDPRDE   76 (248)
Q Consensus        33 ~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~~   76 (248)
                      ..+.|+||++.+.+||+++|||+| ..|+..|+.+.  ..+|...
T Consensus        52 ~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~Cr   94 (138)
T 4ayc_A           52 NELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK--IECPICR   94 (138)
T ss_dssp             HHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTC--SBCTTTC
T ss_pred             ccCCCcccCcccCCceECCCCCCccHHHHHHHHHcC--CcCCCCC
Confidence            357899999999999999999999 45777787654  3456543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.21  E-value=4.3e-07  Score=77.11  Aligned_cols=49  Identities=18%  Similarity=0.226  Sum_probs=36.9

Q ss_pred             CCCCceeccccCCCCCCceEeccCccccc-ceeccccCCCCCCCCCCCCCC
Q psy2200          30 DKSQIYDCNICFDTAKDAVISMCGHLFWL-KFFYWPGRGGSEIDPRDEVPP   79 (248)
Q Consensus        30 ~~~~~~~C~iCld~~~~~v~~~CGH~f~~-cv~~~y~Rg~~~~~p~~~~p~   79 (248)
                      +....|.|+||++++.+||+++|||+||. |+..|+..++ ..||.+..+-
T Consensus       204 ~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~-~~cP~~~~~~  253 (281)
T 2c2l_A          204 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG-HFNPVTRSPL  253 (281)
T ss_dssp             CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTC-SSCTTTCCCC
T ss_pred             CCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCC-CCCcCCCCCC
Confidence            44668999999999999999999999955 5666765543 2377655443

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.21  E-value=3.8e-07  Score=58.73  Aligned_cols=31  Identities=23%  Similarity=0.243  Sum_probs=26.3

Q ss_pred             CCceeccccCCCCCCceEeccCccccc-ceec
Q psy2200          32 SQIYDCNICFDTAKDAVISMCGHLFWL-KFFY   62 (248)
Q Consensus        32 ~~~~~C~iCld~~~~~v~~~CGH~f~~-cv~~   62 (248)
                      ...+.|+||++.+.+|++++|||+|+. |+..
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~   35 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA   35 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHcc
Confidence            456889999999999999999999954 5444

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.12  E-value=5.6e-07  Score=67.54  Aligned_cols=45  Identities=11%  Similarity=0.109  Sum_probs=33.9

Q ss_pred             CCceeccccCCCCCCceEeccCccccc-ceeccccCCCCCCCCCCCC
Q psy2200          32 SQIYDCNICFDTAKDAVISMCGHLFWL-KFFYWPGRGGSEIDPRDEV   77 (248)
Q Consensus        32 ~~~~~C~iCld~~~~~v~~~CGH~f~~-cv~~~y~Rg~~~~~p~~~~   77 (248)
                      ...+.|+||++.+.+||+++|||.||. |+..|+.. ....+|....
T Consensus        50 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~   95 (124)
T 3fl2_A           50 EETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRA-QVFSCPACRY   95 (124)
T ss_dssp             HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT-TCCBCTTTCC
T ss_pred             ccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhH-CcCCCCCCCc
Confidence            446899999999999999999999955 66677652 2345665433

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.12  E-value=5.2e-07  Score=72.05  Aligned_cols=49  Identities=18%  Similarity=0.268  Sum_probs=37.5

Q ss_pred             CCCCCceeccccCCCCCCceEeccCccc-ccceeccccCCCCCCCCCCCCC
Q psy2200          29 NDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGGSEIDPRDEVP   78 (248)
Q Consensus        29 ~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~~~p   78 (248)
                      ......|.|+||++++.|||+++|||+| -.|+..|+..++. .||.+..+
T Consensus       101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~-tcP~t~~~  150 (179)
T 2f42_A          101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGH-FDPVTRSP  150 (179)
T ss_dssp             CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCS-BCTTTCCB
T ss_pred             cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCC-CCCCCcCC
Confidence            3456789999999999999999999999 4466677655433 57765543

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.10  E-value=1.4e-06  Score=58.32  Aligned_cols=46  Identities=24%  Similarity=0.366  Sum_probs=33.2

Q ss_pred             CCCCCCceeccccCCCCC---CceEeccCccc-ccceeccccCCCCCCCCCC
Q psy2200          28 GNDKSQIYDCNICFDTAK---DAVISMCGHLF-WLKFFYWPGRGGSEIDPRD   75 (248)
Q Consensus        28 ~~~~~~~~~C~iCld~~~---~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~   75 (248)
                      .++.....+|+||++.+.   .+++++|||.| ..|+..|+.+..  .+|..
T Consensus         8 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~--~CP~C   57 (69)
T 2kiz_A            8 GTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNK--KCPIC   57 (69)
T ss_dssp             CCSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCS--BCTTT
T ss_pred             cCcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCC--CCcCc
Confidence            334456789999998874   56889999999 667888876543  35543

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.09  E-value=1.2e-06  Score=64.29  Aligned_cols=45  Identities=22%  Similarity=0.466  Sum_probs=34.5

Q ss_pred             CceeccccCCCCCCceEeccCccc-ccceeccccCCC-CCCCCCCCC
Q psy2200          33 QIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGG-SEIDPRDEV   77 (248)
Q Consensus        33 ~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~-~~~~p~~~~   77 (248)
                      ..+.|+||++.+.+|++++|||.| ..|+..|+.... ...+|....
T Consensus        20 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~   66 (112)
T 1jm7_A           20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKN   66 (112)
T ss_dssp             HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSC
T ss_pred             CCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCC
Confidence            468999999999999999999999 557777766432 346665543

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.08  E-value=8.4e-07  Score=77.05  Aligned_cols=51  Identities=29%  Similarity=0.642  Sum_probs=39.2

Q ss_pred             CCceeecccccccCC----cE----EccCCCccCHhHHHHHHHhCCC--------CCcccccccccc
Q psy2200         131 GQIYDCNICLDTAKD----AV----ISMCGHLFCWPCLHQWLETCPN--------RQTCPVCKAAID  181 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~----p~----~~~CgH~fC~~Ci~~~~~~~~~--------~~~CP~Cr~~~~  181 (248)
                      .....|+||++.+.+    |.    ...|||.||..|+.+|++....        ...||.||.++.
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            345789999998776    21    2379999999999999986321        137999999876

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=98.08  E-value=2.4e-06  Score=60.82  Aligned_cols=47  Identities=23%  Similarity=0.564  Sum_probs=37.9

Q ss_pred             eecccccccCC-cEEccCCCccCHhHHHHHHHhCCCCCcccccccccccC
Q psy2200         135 DCNICLDTAKD-AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD  183 (248)
Q Consensus       135 ~C~IC~~~~~~-p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~  183 (248)
                      .|++|--.+.. ..++||+|+||..|+..|.+...  ..||.|+.++..-
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~--k~Cp~C~~~V~rV   50 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGD--KMCPGCSDPVQRI   50 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTC--CBCTTTCCBCSEE
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccC--CCCcCcCCeeeee
Confidence            68888876653 46779999999999999987632  3999999998743

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.06  E-value=1.4e-06  Score=64.78  Aligned_cols=43  Identities=19%  Similarity=0.242  Sum_probs=33.5

Q ss_pred             CCCceeccccCCCCCCceEe-ccCccc-ccceeccccCCCCCCCCCCCC
Q psy2200          31 KSQIYDCNICFDTAKDAVIS-MCGHLF-WLKFFYWPGRGGSEIDPRDEV   77 (248)
Q Consensus        31 ~~~~~~C~iCld~~~~~v~~-~CGH~f-~~cv~~~y~Rg~~~~~p~~~~   77 (248)
                      ....+.|+||++.+.+||++ +|||.| ..|+..|+.    ..+|....
T Consensus        19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~   63 (117)
T 1jm7_B           19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG----TGCPVCYT   63 (117)
T ss_dssp             HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT----TBCSSSCC
T ss_pred             chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc----CCCcCCCC
Confidence            34569999999999999999 999999 456777765    45565443

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.05  E-value=2.4e-06  Score=58.94  Aligned_cols=45  Identities=16%  Similarity=0.288  Sum_probs=30.4

Q ss_pred             CCCCceeccccCCCC--CCceEec--cCccccc-ceeccccCCCCCCCCCC
Q psy2200          30 DKSQIYDCNICFDTA--KDAVISM--CGHLFWL-KFFYWPGRGGSEIDPRD   75 (248)
Q Consensus        30 ~~~~~~~C~iCld~~--~~~v~~~--CGH~f~~-cv~~~y~Rg~~~~~p~~   75 (248)
                      +....+.|+||+|.+  .++++.+  |||.||. |+..++.. ....+|..
T Consensus         7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-~~~~CP~C   56 (78)
T 1e4u_A            7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-ENGLCPAC   56 (78)
T ss_dssp             CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-SCSBCTTT
T ss_pred             ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-CCCCCCCC
Confidence            345678999999988  4567776  9999954 55554432 33556654

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.04  E-value=2.4e-06  Score=57.93  Aligned_cols=45  Identities=18%  Similarity=0.296  Sum_probs=32.4

Q ss_pred             CCCCCceeccccCCCCCCceE---eccCccc-ccceeccccCCCCCCCCCC
Q psy2200          29 NDKSQIYDCNICFDTAKDAVI---SMCGHLF-WLKFFYWPGRGGSEIDPRD   75 (248)
Q Consensus        29 ~~~~~~~~C~iCld~~~~~v~---~~CGH~f-~~cv~~~y~Rg~~~~~p~~   75 (248)
                      .+....++|+||++.+.++..   ++|||.| ..|+..|+....  .+|..
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~--~CP~C   58 (74)
T 2ep4_A           10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRK--VCPLC   58 (74)
T ss_dssp             CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCS--BCTTT
T ss_pred             ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCC--cCCCc
Confidence            344557899999999876544   4999999 667888876543  45544

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.00  E-value=1.3e-06  Score=67.97  Aligned_cols=44  Identities=16%  Similarity=0.052  Sum_probs=33.7

Q ss_pred             CceeccccCCCCCCceEeccCccccc-ceeccccCCCCCCCCCCCC
Q psy2200          33 QIYDCNICFDTAKDAVISMCGHLFWL-KFFYWPGRGGSEIDPRDEV   77 (248)
Q Consensus        33 ~~~~C~iCld~~~~~v~~~CGH~f~~-cv~~~y~Rg~~~~~p~~~~   77 (248)
                      ..+.|+||++.+.+||+++|||+||. |+..|+..+ ...+|....
T Consensus        77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~  121 (150)
T 1z6u_A           77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQ-VFSCPACRH  121 (150)
T ss_dssp             HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTT-CCBCTTTCC
T ss_pred             cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhC-CCcCCCCCc
Confidence            45899999999999999999999954 677776642 345665443

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.99  E-value=4.6e-06  Score=55.89  Aligned_cols=28  Identities=21%  Similarity=0.411  Sum_probs=24.2

Q ss_pred             CCceeccccCCCCCCceEeccCcc-cccc
Q psy2200          32 SQIYDCNICFDTAKDAVISMCGHL-FWLK   59 (248)
Q Consensus        32 ~~~~~C~iCld~~~~~v~~~CGH~-f~~c   59 (248)
                      .....|.||+|...++|++||||+ ||.-
T Consensus        13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~   41 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDG   41 (68)
T ss_dssp             CCSSCCSSSSSSCCCCEETTTTBCCSCTT
T ss_pred             CCCCCCCCcCcCCCCEEEECCCChhhhHH
Confidence            456789999999999999999999 7443

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=97.98  E-value=9.8e-07  Score=59.26  Aligned_cols=42  Identities=26%  Similarity=0.388  Sum_probs=32.9

Q ss_pred             CCceeccccCCCCCCc-------eEeccCccc-ccceeccccCCCCCCCCCC
Q psy2200          32 SQIYDCNICFDTAKDA-------VISMCGHLF-WLKFFYWPGRGGSEIDPRD   75 (248)
Q Consensus        32 ~~~~~C~iCld~~~~~-------v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~   75 (248)
                      ...++|+||++.+.++       +.++|||.| ..|+..|+.+.  ..+|..
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~C   57 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPTC   57 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC--SBCTTT
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC--CCCCCC
Confidence            4578999999999988       899999999 55777887644  345543

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=97.98  E-value=1.5e-06  Score=63.59  Aligned_cols=44  Identities=18%  Similarity=0.163  Sum_probs=34.3

Q ss_pred             CCCceeccccCCCCCCceEe-ccCccc-ccceeccccCCCCCCCCCCC
Q psy2200          31 KSQIYDCNICFDTAKDAVIS-MCGHLF-WLKFFYWPGRGGSEIDPRDE   76 (248)
Q Consensus        31 ~~~~~~C~iCld~~~~~v~~-~CGH~f-~~cv~~~y~Rg~~~~~p~~~   76 (248)
                      ....+.|+||++.+.+||++ +|||.| ..|+..|+...  ..+|...
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr   57 (108)
T 2ckl_A           12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS--KYCPICD   57 (108)
T ss_dssp             HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC--SBCTTTC
T ss_pred             cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC--CcCcCCC
Confidence            35578999999999999998 999999 55777787654  4555543

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=97.96  E-value=2.3e-06  Score=54.43  Aligned_cols=40  Identities=25%  Similarity=0.398  Sum_probs=31.1

Q ss_pred             CceeccccCCCCCC----ceEeccCccc-ccceeccccCCCCCCCCC
Q psy2200          33 QIYDCNICFDTAKD----AVISMCGHLF-WLKFFYWPGRGGSEIDPR   74 (248)
Q Consensus        33 ~~~~C~iCld~~~~----~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~   74 (248)
                      ..++|+||++.+.+    +++++|||.| ..|+..|+...  ..+|.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~   48 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG--YRCPL   48 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT--CCCTT
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC--CcCCC
Confidence            46889999999866    8899999999 66788887654  34443

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=97.96  E-value=1.1e-06  Score=62.43  Aligned_cols=44  Identities=23%  Similarity=0.270  Sum_probs=33.8

Q ss_pred             CCCCceeccccCCCCCC---ceEeccCccc-ccceeccccCCCCCCCCCC
Q psy2200          30 DKSQIYDCNICFDTAKD---AVISMCGHLF-WLKFFYWPGRGGSEIDPRD   75 (248)
Q Consensus        30 ~~~~~~~C~iCld~~~~---~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~   75 (248)
                      .......|+||++.+.+   ++.++|||.| ..|+..|+.+.  ..+|..
T Consensus        36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~--~~CP~C   83 (91)
T 2l0b_A           36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS--GTCPVC   83 (91)
T ss_dssp             SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT--CBCTTT
T ss_pred             ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC--CcCcCc
Confidence            34567899999998877   8889999999 66888887654  355544

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=97.95  E-value=6.1e-06  Score=52.44  Aligned_cols=41  Identities=27%  Similarity=0.481  Sum_probs=31.5

Q ss_pred             CCceeccccCCCCCC---ceEec-cCccc-ccceeccccCCCCCCCCC
Q psy2200          32 SQIYDCNICFDTAKD---AVISM-CGHLF-WLKFFYWPGRGGSEIDPR   74 (248)
Q Consensus        32 ~~~~~C~iCld~~~~---~v~~~-CGH~f-~~cv~~~y~Rg~~~~~p~   74 (248)
                      ....+|+||++.+.+   ++.++ |||.| ..|+.+|+.+.  ..+|.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~--~~CP~   48 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH--STCPL   48 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC--CSCSS
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC--CcCcC
Confidence            456789999999887   78887 99999 66788887653  34443

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=97.94  E-value=1.7e-06  Score=64.40  Aligned_cols=39  Identities=26%  Similarity=0.447  Sum_probs=32.3

Q ss_pred             CCCCCCceeccccCCCCCCceEeccCccc-ccceeccccC
Q psy2200          28 GNDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGR   66 (248)
Q Consensus        28 ~~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~R   66 (248)
                      .+.....|.|+||++.+.+||.++|||+| ..|+..|+..
T Consensus        12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~   51 (118)
T 3hct_A           12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRD   51 (118)
T ss_dssp             SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH
T ss_pred             ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhh
Confidence            34567789999999999999999999999 4567777543

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=97.88  E-value=4.6e-06  Score=55.46  Aligned_cols=41  Identities=20%  Similarity=0.420  Sum_probs=31.5

Q ss_pred             CceeccccCCCCCCc-eEeccCccc-ccceeccccCCCCCCCCCC
Q psy2200          33 QIYDCNICFDTAKDA-VISMCGHLF-WLKFFYWPGRGGSEIDPRD   75 (248)
Q Consensus        33 ~~~~C~iCld~~~~~-v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~   75 (248)
                      ....|+||++.+.++ +.++|||.| ..|+..|+.+.  ..+|..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~--~~CP~C   46 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN--PTCPLC   46 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS--CSTTTT
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc--CcCcCC
Confidence            356899999999996 789999999 56777887544  345543

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.88  E-value=1.8e-06  Score=57.02  Aligned_cols=42  Identities=19%  Similarity=0.274  Sum_probs=31.0

Q ss_pred             ceeccccCC-CCCCc----eEeccCccc-ccceeccccCCCCCCCCCCC
Q psy2200          34 IYDCNICFD-TAKDA----VISMCGHLF-WLKFFYWPGRGGSEIDPRDE   76 (248)
Q Consensus        34 ~~~C~iCld-~~~~~----v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~~   76 (248)
                      .+.|+||++ .+.+|    ++++|||.| ..|+..|+.++ ...+|...
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr   50 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-AGNCPECG   50 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT-SSSCTTTC
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcC-CCcCCCCC
Confidence            578999999 88888    578999999 45777775543 34556543

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=97.87  E-value=3.3e-06  Score=60.67  Aligned_cols=45  Identities=24%  Similarity=0.362  Sum_probs=34.3

Q ss_pred             CCCceeccccCCCCCCceEe-ccCccc-ccceeccccCCCCCCCCCCCC
Q psy2200          31 KSQIYDCNICFDTAKDAVIS-MCGHLF-WLKFFYWPGRGGSEIDPRDEV   77 (248)
Q Consensus        31 ~~~~~~C~iCld~~~~~v~~-~CGH~f-~~cv~~~y~Rg~~~~~p~~~~   77 (248)
                      ....+.|+||++.+.+|+++ +|||.| ..|+..|+.+.  ..+|....
T Consensus        19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~--~~CP~Cr~   65 (99)
T 2y43_A           19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK--TQCPTCCV   65 (99)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC--CBCTTTCC
T ss_pred             CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC--CCCCCCCC
Confidence            34568999999999999998 899999 44777787643  45565443

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=97.86  E-value=1.6e-06  Score=56.90  Aligned_cols=40  Identities=25%  Similarity=0.448  Sum_probs=31.2

Q ss_pred             CceeccccCCCCCCc-------eEeccCccc-ccceeccccCCCCCCCCC
Q psy2200          33 QIYDCNICFDTAKDA-------VISMCGHLF-WLKFFYWPGRGGSEIDPR   74 (248)
Q Consensus        33 ~~~~C~iCld~~~~~-------v~~~CGH~f-~~cv~~~y~Rg~~~~~p~   74 (248)
                      ..++|+||++.+.++       +.++|||.| ..|+..|+.+.  ..+|.
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~--~~CP~   49 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA--NTCPT   49 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC--SBCTT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC--CCCCC
Confidence            468999999999887       899999999 55777787652  34454

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=97.86  E-value=2.8e-06  Score=66.85  Aligned_cols=47  Identities=21%  Similarity=0.260  Sum_probs=35.6

Q ss_pred             CCCCceeccccCCCCCCceEe-ccCccc-ccceeccccCCCCCCCCCCCC
Q psy2200          30 DKSQIYDCNICFDTAKDAVIS-MCGHLF-WLKFFYWPGRGGSEIDPRDEV   77 (248)
Q Consensus        30 ~~~~~~~C~iCld~~~~~v~~-~CGH~f-~~cv~~~y~Rg~~~~~p~~~~   77 (248)
                      .....+.|+||++.+.+||++ +|||.| ..|+..|+..+ ...+|....
T Consensus        50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~   98 (165)
T 2ckl_B           50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSG-NKECPTCRK   98 (165)
T ss_dssp             CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTT-CCBCTTTCC
T ss_pred             hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhC-cCCCCCCCC
Confidence            344568999999999999998 999999 45777787643 355665543

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.84  E-value=6.4e-07  Score=61.23  Aligned_cols=30  Identities=30%  Similarity=0.511  Sum_probs=25.2

Q ss_pred             CCCceeccccCCCCCCceEeccCcc-cccce
Q psy2200          31 KSQIYDCNICFDTAKDAVISMCGHL-FWLKF   60 (248)
Q Consensus        31 ~~~~~~C~iCld~~~~~v~~~CGH~-f~~cv   60 (248)
                      ....++|+||+|.+.+||+++|||. ||.-+
T Consensus        22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C   52 (75)
T 2ecg_A           22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQC   52 (75)
T ss_dssp             HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHH
T ss_pred             CCCCCCCCcCCCCCCCEEEecCCCHHHHHHH
Confidence            3456899999999999999999999 85433

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.83  E-value=6e-06  Score=56.13  Aligned_cols=44  Identities=18%  Similarity=0.244  Sum_probs=33.2

Q ss_pred             CCCceeccccCCCCCCc---eEeccCccc-ccceeccccCCCCCCCCCCC
Q psy2200          31 KSQIYDCNICFDTAKDA---VISMCGHLF-WLKFFYWPGRGGSEIDPRDE   76 (248)
Q Consensus        31 ~~~~~~C~iCld~~~~~---v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~~   76 (248)
                      .....+|+||++.+.++   +.++|||.| ..|+..|+.+.  ..+|...
T Consensus        20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~--~~CP~Cr   67 (75)
T 1x4j_A           20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN--RTCPICR   67 (75)
T ss_dssp             SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC--SSCTTTC
T ss_pred             cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC--CcCcCcC
Confidence            34567999999998876   789999999 66888887654  3455443

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=97.78  E-value=3.5e-06  Score=62.32  Aligned_cols=36  Identities=25%  Similarity=0.405  Sum_probs=30.4

Q ss_pred             CCCceeccccCCCCCCceEeccCccc-ccceeccccC
Q psy2200          31 KSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGR   66 (248)
Q Consensus        31 ~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~R   66 (248)
                      ....+.|+||++.+.+||.++|||.| ..|+..|+..
T Consensus        20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~   56 (116)
T 1rmd_A           20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKV   56 (116)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH
T ss_pred             ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhH
Confidence            34568999999999999999999999 5577777654

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=97.76  E-value=5.9e-06  Score=56.22  Aligned_cols=33  Identities=27%  Similarity=0.324  Sum_probs=26.9

Q ss_pred             CCCceeccccCCCCCCceEeccCcc-cc-cceecc
Q psy2200          31 KSQIYDCNICFDTAKDAVISMCGHL-FW-LKFFYW   63 (248)
Q Consensus        31 ~~~~~~C~iCld~~~~~v~~~CGH~-f~-~cv~~~   63 (248)
                      ....+.|+||++.+.++|+++|||. || .|+..|
T Consensus        21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~   55 (74)
T 4ic3_A           21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV   55 (74)
T ss_dssp             HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC
T ss_pred             CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC
Confidence            3446899999999999999999999 84 455555

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=97.75  E-value=1.4e-05  Score=67.09  Aligned_cols=45  Identities=18%  Similarity=0.209  Sum_probs=34.0

Q ss_pred             CCCCceeccccCCCCCCceEe-ccCccccc-ceeccccCCCCCCCCC
Q psy2200          30 DKSQIYDCNICFDTAKDAVIS-MCGHLFWL-KFFYWPGRGGSEIDPR   74 (248)
Q Consensus        30 ~~~~~~~C~iCld~~~~~v~~-~CGH~f~~-cv~~~y~Rg~~~~~p~   74 (248)
                      .....|.|+||++.+.+||++ .|||+|+. |+..|+..++...||.
T Consensus       177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPv  223 (267)
T 3htk_C          177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQ  223 (267)
T ss_dssp             SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSG
T ss_pred             CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCc
Confidence            345679999999999999985 99999955 5555655444456675

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=97.69  E-value=7.2e-06  Score=64.80  Aligned_cols=47  Identities=28%  Similarity=0.460  Sum_probs=35.9

Q ss_pred             CCCCCCceeccccCCCCCCceEeccCccc-ccceeccccCCCCCCCCCC
Q psy2200          28 GNDKSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGGSEIDPRD   75 (248)
Q Consensus        28 ~~~~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~   75 (248)
                      .+.....|.|+||++++.+||.++|||+| ..|+..|+..+. ..+|..
T Consensus        12 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~-~~CP~C   59 (170)
T 3hcs_A           12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG-HKCPVD   59 (170)
T ss_dssp             SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC-SBCTTT
T ss_pred             ccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCC-CCCCCC
Confidence            34567789999999999999999999999 456777765432 255544

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=97.66  E-value=1.4e-05  Score=58.79  Aligned_cols=42  Identities=31%  Similarity=0.474  Sum_probs=31.0

Q ss_pred             ceeccccCCCCCCce------------------EeccCccc-ccceeccccCC---CCCCCCCC
Q psy2200          34 IYDCNICFDTAKDAV------------------ISMCGHLF-WLKFFYWPGRG---GSEIDPRD   75 (248)
Q Consensus        34 ~~~C~iCld~~~~~v------------------~~~CGH~f-~~cv~~~y~Rg---~~~~~p~~   75 (248)
                      ..+|+||++.+.+++                  .++|||.| ..|+..|+..+   ....+|..
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~C   88 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSC   88 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTT
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCC
Confidence            469999999997765                  78999999 66888887432   23456654

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=97.52  E-value=1.2e-05  Score=52.69  Aligned_cols=41  Identities=20%  Similarity=0.212  Sum_probs=32.3

Q ss_pred             ceeccccCCCCCCceEe-ccCccc-ccceeccccCCCCCCCCCCC
Q psy2200          34 IYDCNICFDTAKDAVIS-MCGHLF-WLKFFYWPGRGGSEIDPRDE   76 (248)
Q Consensus        34 ~~~C~iCld~~~~~v~~-~CGH~f-~~cv~~~y~Rg~~~~~p~~~   76 (248)
                      .|.|+||+++..|||++ ++||+| -.++.+|+.+.+  .||.+.
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~--~cP~t~   45 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG--NDPITN   45 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS--BCTTTC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCC--CCcCCc
Confidence            58999999999999999 999999 557778876543  366543

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=97.26  E-value=7e-05  Score=51.51  Aligned_cols=31  Identities=16%  Similarity=0.331  Sum_probs=25.3

Q ss_pred             CceeccccCCCCCCceEeccCcc-ccc-ceecc
Q psy2200          33 QIYDCNICFDTAKDAVISMCGHL-FWL-KFFYW   63 (248)
Q Consensus        33 ~~~~C~iCld~~~~~v~~~CGH~-f~~-cv~~~   63 (248)
                      ....|.||+|.+.++|++||||. ||. |...+
T Consensus        17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~   49 (79)
T 2yho_A           17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL   49 (79)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC
T ss_pred             CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc
Confidence            45689999999999999999999 744 54444

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.26  E-value=4.4e-05  Score=54.20  Aligned_cols=30  Identities=13%  Similarity=0.373  Sum_probs=24.1

Q ss_pred             CceeccccCCCCCCceEe---ccCcccccceec
Q psy2200          33 QIYDCNICFDTAKDAVIS---MCGHLFWLKFFY   62 (248)
Q Consensus        33 ~~~~C~iCld~~~~~v~~---~CGH~f~~cv~~   62 (248)
                      ..|+|+||+|.+.+++.+   +|||.||.-++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~   36 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLK   36 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHH
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHH
Confidence            478999999999988765   699999664444

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=97.26  E-value=4.8e-05  Score=49.95  Aligned_cols=41  Identities=22%  Similarity=0.312  Sum_probs=29.7

Q ss_pred             CCceeccccCCCCCCceEe--ccCcc-c-ccceeccccCCCCCCCCC
Q psy2200          32 SQIYDCNICFDTAKDAVIS--MCGHL-F-WLKFFYWPGRGGSEIDPR   74 (248)
Q Consensus        32 ~~~~~C~iCld~~~~~v~~--~CGH~-f-~~cv~~~y~Rg~~~~~p~   74 (248)
                      ....+|.||+|...+++++  ||||+ | ..|...|..++  ..+|.
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~--~~CPi   49 (63)
T 2vje_B            5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG--ASCPI   49 (63)
T ss_dssp             GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT--CBCTT
T ss_pred             CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC--CcCCC
Confidence            4467899999999999888  99999 6 45665554332  34554

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.21  E-value=0.0003  Score=48.47  Aligned_cols=40  Identities=25%  Similarity=0.366  Sum_probs=29.6

Q ss_pred             ceeccccCCCCCC--------------ceEec-cCccc-ccceeccccCCCCCCCCCC
Q psy2200          34 IYDCNICFDTAKD--------------AVISM-CGHLF-WLKFFYWPGRGGSEIDPRD   75 (248)
Q Consensus        34 ~~~C~iCld~~~~--------------~v~~~-CGH~f-~~cv~~~y~Rg~~~~~p~~   75 (248)
                      .-.|+||++.+.+              +++++ |||.| ..|+.+|+.+..  .+|..
T Consensus        15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~--~CP~C   70 (81)
T 2ecl_A           15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNN--RCPLC   70 (81)
T ss_dssp             CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCC--BCTTT
T ss_pred             CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCC--CCCCc
Confidence            3559999998876              55655 99999 778889987653  55543

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=97.21  E-value=7.4e-05  Score=66.35  Aligned_cols=42  Identities=29%  Similarity=0.487  Sum_probs=31.7

Q ss_pred             CceeccccCCCCCCceEeccCcccc-cceeccccCCCCCCCCCC
Q psy2200          33 QIYDCNICFDTAKDAVISMCGHLFW-LKFFYWPGRGGSEIDPRD   75 (248)
Q Consensus        33 ~~~~C~iCld~~~~~v~~~CGH~f~-~cv~~~y~Rg~~~~~p~~   75 (248)
                      ...+|+||++.+.+|+.++|||.|| .|+..|... ....||.+
T Consensus       331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~-~~~~CP~C  373 (389)
T 2y1n_A          331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES-EGQGCPFC  373 (389)
T ss_dssp             SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHH-TCSBCTTT
T ss_pred             CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhc-CCCCCCCC
Confidence            3479999999999999999999994 466677652 23455544

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=97.11  E-value=0.00012  Score=48.21  Aligned_cols=41  Identities=27%  Similarity=0.297  Sum_probs=30.0

Q ss_pred             CceeccccCCCCCCceEe--ccCcc-c-ccceeccccCCCCCCCCCC
Q psy2200          33 QIYDCNICFDTAKDAVIS--MCGHL-F-WLKFFYWPGRGGSEIDPRD   75 (248)
Q Consensus        33 ~~~~C~iCld~~~~~v~~--~CGH~-f-~~cv~~~y~Rg~~~~~p~~   75 (248)
                      +..+|.||+|...+++++  ||||. | ..|...|..++  ..+|..
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~--~~CPiC   51 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN--KPCPVC   51 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT--CCCTTT
T ss_pred             CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC--CcCCCc
Confidence            456899999999999988  99999 4 45666665432  345543

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.03  E-value=0.00053  Score=57.10  Aligned_cols=49  Identities=22%  Similarity=0.594  Sum_probs=40.3

Q ss_pred             ceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200         133 IYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK  182 (248)
Q Consensus       133 ~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~  182 (248)
                      ...|.||.+.......- .|+|.||..|+..|++.+. ...||.|+.....
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~-~~~CP~C~~~W~~  229 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA-EPRCPHCNDYWPH  229 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCS-SCBCTTTCCBCCS
T ss_pred             CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCC-CCCCCCCCCCCCC
Confidence            46899999998877666 4999999999999998653 4599999887543

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=96.88  E-value=0.00033  Score=61.47  Aligned_cols=32  Identities=25%  Similarity=0.458  Sum_probs=26.5

Q ss_pred             CCceeccccCCCCCCceEeccCcc-ccc-ceecc
Q psy2200          32 SQIYDCNICFDTAKDAVISMCGHL-FWL-KFFYW   63 (248)
Q Consensus        32 ~~~~~C~iCld~~~~~v~~~CGH~-f~~-cv~~~   63 (248)
                      ...+.|+||+|.+.+||+++|||. ||. |+..|
T Consensus       293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~  326 (345)
T 3t6p_A          293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL  326 (345)
T ss_dssp             HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC
T ss_pred             cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC
Confidence            345899999999999999999999 855 54444

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=96.74  E-value=0.00071  Score=66.15  Aligned_cols=66  Identities=15%  Similarity=0.064  Sum_probs=58.2

Q ss_pred             cCCCCceeecccccccCCcEEccCC-CccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCCCC
Q psy2200         128 NDKGQIYDCNICLDTAKDAVISMCG-HLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSK  196 (248)
Q Consensus       128 ~~~~~~~~C~IC~~~~~~p~~~~Cg-H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~  196 (248)
                      .+..+.+.|||-.+.+.+||+++-| ++|-+..|.+|+..+.   +||+-|.++...+++||+.++..+.
T Consensus       886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~---tdP~Tr~~L~~~~liPN~~Lk~~I~  952 (968)
T 3m62_A          886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDS---TDPFNRMPLKLEDVTPNEELRQKIL  952 (968)
T ss_dssp             CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCC---BCTTTCCBCCGGGCEECHHHHHHHH
T ss_pred             cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCC---CCCCCCCCCCcccccccHHHHHHHH
Confidence            3456779999999999999999998 5899999999998765   9999999999999999998776543

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.62  E-value=0.0018  Score=44.53  Aligned_cols=43  Identities=16%  Similarity=0.278  Sum_probs=32.9

Q ss_pred             ceeccccCCCC--CCceEeccC-----ccc-ccceeccccCCCCCCCCCCC
Q psy2200          34 IYDCNICFDTA--KDAVISMCG-----HLF-WLKFFYWPGRGGSEIDPRDE   76 (248)
Q Consensus        34 ~~~C~iCld~~--~~~v~~~CG-----H~f-~~cv~~~y~Rg~~~~~p~~~   76 (248)
                      ...|.||++-+  .+++++||.     |.| -.|+.+|+.......+|...
T Consensus        15 ~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr   65 (80)
T 2d8s_A           15 QDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCK   65 (80)
T ss_dssp             SCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSC
T ss_pred             CCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCC
Confidence            45799999776  468899996     999 77888998765545666543

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=96.55  E-value=0.0007  Score=49.19  Aligned_cols=40  Identities=25%  Similarity=0.582  Sum_probs=30.1

Q ss_pred             ceeccccCCCCCCc------------------eEeccCccc-ccceeccccCCCCCCCCCC
Q psy2200          34 IYDCNICFDTAKDA------------------VISMCGHLF-WLKFFYWPGRGGSEIDPRD   75 (248)
Q Consensus        34 ~~~C~iCld~~~~~------------------v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~   75 (248)
                      .-.|+||++.+.++                  +.++|||.| ..|+..|+.+.  ..+|..
T Consensus        37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~--~~CP~C   95 (106)
T 3dpl_R           37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPLD   95 (106)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC--SBCSSS
T ss_pred             CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC--CcCcCC
Confidence            35699999998865                  558999999 77888897753  445543

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=96.36  E-value=0.0014  Score=46.78  Aligned_cols=32  Identities=31%  Similarity=0.554  Sum_probs=27.0

Q ss_pred             ceeecccccc-cCCcEE--ccCCCccCHhHHHHHH
Q psy2200         133 IYDCNICLDT-AKDAVI--SMCGHLFCWPCLHQWL  164 (248)
Q Consensus       133 ~~~C~IC~~~-~~~p~~--~~CgH~fC~~Ci~~~~  164 (248)
                      .+.|+||.+. +.+++.  +.|+|.||..|+..+.
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h   37 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH   37 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence            3689999975 677887  8999999999999743

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=95.86  E-value=0.0014  Score=48.42  Aligned_cols=39  Identities=26%  Similarity=0.571  Sum_probs=0.0

Q ss_pred             eeccccCCCCCCc------------------eEeccCccc-ccceeccccCCCCCCCCCC
Q psy2200          35 YDCNICFDTAKDA------------------VISMCGHLF-WLKFFYWPGRGGSEIDPRD   75 (248)
Q Consensus        35 ~~C~iCld~~~~~------------------v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~   75 (248)
                      -.|+||++.+.++                  +.++|||.| ..|+..|+.+.  ..+|..
T Consensus        49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~--~~CP~C  106 (117)
T 4a0k_B           49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR--QVCPLD  106 (117)
T ss_dssp             ------------------------------------------------------------
T ss_pred             CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC--CcCCCC
Confidence            4799999998763                  225899999 77899998763  345543

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.64  E-value=0.014  Score=39.41  Aligned_cols=44  Identities=16%  Similarity=0.200  Sum_probs=33.1

Q ss_pred             CCceeccccCCCCCCceE-eccCccc-ccceeccccCCCCCCCCCC
Q psy2200          32 SQIYDCNICFDTAKDAVI-SMCGHLF-WLKFFYWPGRGGSEIDPRD   75 (248)
Q Consensus        32 ~~~~~C~iCld~~~~~v~-~~CGH~f-~~cv~~~y~Rg~~~~~p~~   75 (248)
                      +..-+|.||.+.+..-+. ..|+|.| .-|+.+|+.......+|..
T Consensus        13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~C   58 (74)
T 2ct0_A           13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHC   58 (74)
T ss_dssp             SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTT
T ss_pred             CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCC
Confidence            445789999999875443 3799999 8889999876544667754

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=94.68  E-value=0.022  Score=38.58  Aligned_cols=37  Identities=27%  Similarity=0.722  Sum_probs=30.8

Q ss_pred             CCceeecccccccCCcEEccC----CCccCHhHHHHHHHhC
Q psy2200         131 GQIYDCNICLDTAKDAVISMC----GHLFCWPCLHQWLETC  167 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~p~~~~C----gH~fC~~Ci~~~~~~~  167 (248)
                      ...+.|.+|.+.+.+.-...|    +|.||..|-...++..
T Consensus        13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q   53 (93)
T 2cs3_A           13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQ   53 (93)
T ss_dssp             CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHH
T ss_pred             CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhc
Confidence            345799999999998866666    7999999999998763

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=89.91  E-value=0.25  Score=43.31  Aligned_cols=55  Identities=24%  Similarity=0.409  Sum_probs=40.7

Q ss_pred             CceeecccccccCCcEEc-cCCCccCHh--HHHHHHHhCCCCCcccccccccccCCcee
Q psy2200         132 QIYDCNICLDTAKDAVIS-MCGHLFCWP--CLHQWLETCPNRQTCPVCKAAIDKDKVIP  187 (248)
Q Consensus       132 ~~~~C~IC~~~~~~p~~~-~CgH~fC~~--Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~  187 (248)
                      -.+.||+-...+..|+.- .|.|.-|.+  -+....... ....||+|.+.+...+++.
T Consensus       248 vSL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~-~~W~CPIC~k~~~~~dL~I  305 (371)
T 3i2d_A          248 MSLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQI-PTWQCPVCQIDIALENLAI  305 (371)
T ss_dssp             EESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHS-CCCBCTTTCCBCCGGGEEE
T ss_pred             EeecCCCccccccccCcCCcCCCcceECHHHHHHHhhcC-CceeCCCCCcccCHHHeeE
Confidence            347899999999999876 799995544  444444443 3789999999887766553

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=89.19  E-value=0.32  Score=42.54  Aligned_cols=53  Identities=25%  Similarity=0.348  Sum_probs=40.0

Q ss_pred             ceeecccccccCCcEEc-cCCCc--cCHhHHHHHHHhCCCCCcccccccccccCCce
Q psy2200         133 IYDCNICLDTAKDAVIS-MCGHL--FCWPCLHQWLETCPNRQTCPVCKAAIDKDKVI  186 (248)
Q Consensus       133 ~~~C~IC~~~~~~p~~~-~CgH~--fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~  186 (248)
                      .+.||+-...+..|+.- .|.|.  |-..-+.......+ ...||+|.+.+..++++
T Consensus       215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~-~W~CPiC~k~~~~~dL~  270 (360)
T 4fo9_A          215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKP-TWICPVCDKKAAYESLI  270 (360)
T ss_dssp             ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSC-CCBCTTTCSBCCGGGEE
T ss_pred             eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCC-CeECCCCCcccCHHHeE
Confidence            46899999999999876 79999  44444555444443 78999999998766654

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=85.20  E-value=0.32  Score=34.13  Aligned_cols=29  Identities=24%  Similarity=0.364  Sum_probs=23.0

Q ss_pred             ceeccccCCC-CCCceE--eccCcccccceec
Q psy2200          34 IYDCNICFDT-AKDAVI--SMCGHLFWLKFFY   62 (248)
Q Consensus        34 ~~~C~iCld~-~~~~v~--~~CGH~f~~cv~~   62 (248)
                      ...|.||++. +.+||.  +.|||.||.-++.
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~   34 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLK   34 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHH
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCH
Confidence            3679999964 788888  9999999665544

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=84.78  E-value=0.36  Score=42.02  Aligned_cols=34  Identities=24%  Similarity=0.390  Sum_probs=26.4

Q ss_pred             CCceeccccCCCCCC----ce----EeccCccc-ccceecccc
Q psy2200          32 SQIYDCNICFDTAKD----AV----ISMCGHLF-WLKFFYWPG   65 (248)
Q Consensus        32 ~~~~~C~iCld~~~~----~v----~~~CGH~f-~~cv~~~y~   65 (248)
                      ...-+|+||++.+.+    |.    ...|||.| -.|+.+|+.
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLr  348 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFK  348 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHH
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHH
Confidence            457899999987665    21    24799999 889999964

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=82.95  E-value=1.5  Score=29.98  Aligned_cols=46  Identities=17%  Similarity=0.310  Sum_probs=31.0

Q ss_pred             CCCceeecccccccCCcEEcc---CCCccCHhHHHHHH------------HhCC-CCCccccc
Q psy2200         130 KGQIYDCNICLDTAKDAVISM---CGHLFCWPCLHQWL------------ETCP-NRQTCPVC  176 (248)
Q Consensus       130 ~~~~~~C~IC~~~~~~p~~~~---CgH~fC~~Ci~~~~------------~~~~-~~~~CP~C  176 (248)
                      ...+..|.||...-. -.+++   |+-+|+..|+.+.-            ..+. ....|+.|
T Consensus        12 ~~~D~~C~VC~~~t~-~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~C   73 (89)
T 1wil_A           12 VVNDEMCDVCEVWTA-ESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYC   73 (89)
T ss_dssp             CCCSCCCTTTCCCCS-SCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTT
T ss_pred             CCCCcccCccccccc-cceeccccccccccHhhcccccccccHHHHHHHHccCCCCCcccccc
Confidence            345568999985433 34554   78999999999861            1111 25789999

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=81.79  E-value=0.95  Score=29.44  Aligned_cols=45  Identities=24%  Similarity=0.648  Sum_probs=32.3

Q ss_pred             eeecccccccCCcEEc--cCCCccCHhHHHHHHHhCC-CCCccccccccc
Q psy2200         134 YDCNICLDTAKDAVIS--MCGHLFCWPCLHQWLETCP-NRQTCPVCKAAI  180 (248)
Q Consensus       134 ~~C~IC~~~~~~p~~~--~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~  180 (248)
                      ..|.||.+.-  .+++  .|...||..|+...+...+ +...|+.|....
T Consensus        13 ~~C~vC~~~~--~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~   60 (66)
T 2lri_C           13 ARCGVCGDGT--DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV   60 (66)
T ss_dssp             CCCTTTSCCT--TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred             CCcCCCCCCC--eEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence            4699998642  2333  6889999999987765533 367999997643

>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2

Probab=80.59  E-value=2.6  Score=29.24  Aligned_cols=46  Identities=22%  Similarity=0.549  Sum_probs=29.6

Q ss_pred             CCceeecccccccCCcEEc---c--CC-CccCHhHHHHHHHh-CCCCCccccccccc
Q psy2200         131 GQIYDCNICLDTAKDAVIS---M--CG-HLFCWPCLHQWLET-CPNRQTCPVCKAAI  180 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~p~~~---~--Cg-H~fC~~Ci~~~~~~-~~~~~~CP~Cr~~~  180 (248)
                      .+...| ||...... .++   .  |. ..||..|+.  +.. ..+...||.|+..-
T Consensus        34 ~e~~yC-iC~~~~~g-~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~   86 (91)
T 1weu_A           34 NEPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES   86 (91)
T ss_dssp             CCCBCS-TTCCBCCS-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred             CCCcEE-ECCCCCCC-CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence            445678 99986543 344   3  55 579999987  222 22467899997654

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=80.24  E-value=0.25  Score=31.56  Aligned_cols=42  Identities=14%  Similarity=0.205  Sum_probs=28.9

Q ss_pred             CceeccccCCCCCCceEeccCc-----cc-ccceeccccCCCCCCCCC
Q psy2200          33 QIYDCNICFDTAKDAVISMCGH-----LF-WLKFFYWPGRGGSEIDPR   74 (248)
Q Consensus        33 ~~~~C~iCld~~~~~v~~~CGH-----~f-~~cv~~~y~Rg~~~~~p~   74 (248)
                      ..-.|.||++-..++++.||.+     .| -.|+.+|+...+...++.
T Consensus         5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~   52 (60)
T 1vyx_A            5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQI   52 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTT
T ss_pred             CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCC
Confidence            3457999998877888899653     33 568888876433344444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	248
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	8e-14
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	0.003
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	6e-13
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	3e-12
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	9e-10
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	2e-09
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	4e-08
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	1e-07
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	3e-06
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	4e-06
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	4e-06
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	8e-06
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	2e-05
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	3e-05
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	3e-04
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	7e-04
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	9e-04

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (154), Expect = 8e-14
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 132 QIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY 189
           +I +C ICL+  K+ V + C H+FC  C+ + L        CP+CK  I K  +    
Sbjct: 20  KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST 77

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (78), Expect = 0.003
 Identities = 9/31 (29%), Positives = 15/31 (48%)

Query: 33 QIYDCNICFDTAKDAVISMCGHLFWLKFFYW 63
          +I +C IC +  K+ V + C H+F       
Sbjct: 20 KILECPICLELIKEPVSTKCDHIFCKFCMLK 50

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (146), Expect = 6e-13
 Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 136 CNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPV 188
           C IC +  KD  I  CGHL C  CL  W E+    Q CP C+  I   + I V
Sbjct: 26  CKICAENDKDVKIEPCGHLMCTSCLTSWQES--EGQGCPFCRCEIKGTEPIVV 76

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.8 bits (142), Expect = 3e-12
 Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 113 NRDEGSGDQKKTDGENDKGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQT 172
           ++   S      D      +   C IC     D V + C HLFC  C+ + L+       
Sbjct: 3   SKIHLSTKLLAVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKV--MGSY 60

Query: 173 CPVCKAAIDKDKVIP 187
           CP C+       +  
Sbjct: 61  CPSCRYPCFPTDLES 75

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 51.5 bits (123), Expect = 9e-10
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 136 CNICLDTAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK 182
           C ICL+   +  +++ C H FC+ C+ +W+       TCP+CK  ++ 
Sbjct: 8   CPICLEDPSNYSMALPCLHAFCYVCITRWIR---QNPTCPLCKVPVES 52

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (120), Expect = 2e-09
 Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 6/49 (12%)

Query: 132 QIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAI 180
           Q   C  C   AK   +  C H  C  CL            CP+C+A  
Sbjct: 5   QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS------GMQCPICQAPW 47

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 46.8 bits (111), Expect = 4e-08
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 135 DCNICLDTAKD----AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAI 180
           +C +CL   +D      +  CGH F   C+  WL +     TCP+C+  +
Sbjct: 7   ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS---HSTCPLCRLTV 53

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 45.8 bits (108), Expect = 1e-07
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIP 187
           + C I L+  KD VI   G  +    + +WL+     +TCP  +  +    + P
Sbjct: 9   FRCPISLELMKDPVIVSTGQTYERSSIQKWLDA--GHKTCPKSQETLLHAGLTP 60

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 41.4 bits (96), Expect = 3e-06
 Identities = 10/48 (20%), Positives = 13/48 (27%), Gaps = 6/48 (12%)

Query: 136 CNICLDTAKDAVISM-----CGHLFCWPCLHQWLETCPNRQTCPVCKA 178
           C IC +   +                  CL  WL    N   C +C  
Sbjct: 9   CWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNT-ACQICGV 55

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 4e-06
 Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 7/56 (12%)

Query: 135 DCNICLDTAKD-----AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV 185
            C  C  T         ++++CGH  C  C+            CP C   + K   
Sbjct: 5   GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFV--RGAGNCPECGTPLRKSNF 58

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.9 bits (95), Expect = 4e-06
 Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 4/55 (7%)

Query: 136 CNICLDTAKDAVISM-CGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY 189
           C I     +  V+S     +F    L Q+     +    P+    +  ++++ + 
Sbjct: 3   CAISGKVPRRPVLSPKSRTIFEKSLLEQY---VKDTGNDPITNEPLSIEEIVEIV 54

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 8e-06
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 135 DCNICLD----TAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKD 183
           +C +C++       +     CG+  C  C H+          CP C+    +D
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGL--CPACRKPYPED 52

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.8 bits (92), Expect = 2e-05
 Identities = 7/56 (12%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY 189
               I  +  ++  I+  G  +    + +           PV ++ + ++++IP  
Sbjct: 8   LCGKISFELMREPCITPSGITYDRKDIEEH--LQRVGHFNPVTRSPLTQEQLIPNL 61

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 3e-05
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 6/53 (11%)

Query: 136 CNICLDTAKDA-VISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIP 187
           C+ C +  ++   +  C H+FC  C+   +        CPVC        +  
Sbjct: 25  CSRCTNILREPVCLGGCEHIFCSNCVSDCIG-----TGCPVCYTPAWIQDLKI 72

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 3e-04
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 135 DCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDK 184
           +              +C H F + C+ +WL+T   RQ CP+     +  K
Sbjct: 41  NQASATSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPLDNREWEFQK 87

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.2 bits (82), Expect = 7e-04
 Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 2/56 (3%)

Query: 147 VISMCGHLFCWPCLHQWLETCPNRQ--TCPVCKAAIDKDKVIPVYGRGGSSKTDPR 200
            ++ C H F   CL              CP CK    +      +G+    ++ P 
Sbjct: 57  RLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTGTQPWGKMEVFRSGPS 112

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 9e-04
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 8/51 (15%)

Query: 135 DCNICLDTAKDA---VISMCGHLFCWPCLHQWLETCPNRQ-----TCPVCK 177
            C +CL          I+ C  +FC  CL Q++E           +CP   
Sbjct: 7   GCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	248
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.52
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.52
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.51
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.51
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.49
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.44
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.39
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.38
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.34
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.33
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.32
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.32
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.28
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.15
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.05
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.95
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.58
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.53
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.47
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.44
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	98.42
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.31
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.24
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.13
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.1
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	98.08
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	97.93
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	97.72
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	97.49
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	97.34
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	97.16
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	96.54
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	95.37
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	95.28
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	94.45
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	84.06
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	80.69

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.1e-15  Score=109.06  Aligned_cols=64  Identities=30%  Similarity=0.643  Sum_probs=54.5

Q ss_pred             CCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCC
Q psy2200         131 GQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGS  194 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~  194 (248)
                      .+.+.|+||++.+.+|+.++|||+||..||..|+....+...||+||..+...++.+++.+...
T Consensus        19 ~~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~   82 (103)
T d1jm7a_          19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQL   82 (103)
T ss_dssp             HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHH
T ss_pred             ccCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHH
Confidence            3457899999999999999999999999999999876545689999999988888777665543

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=1.5e-15  Score=97.45  Aligned_cols=53  Identities=15%  Similarity=0.327  Sum_probs=48.5

Q ss_pred             eeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeee
Q psy2200         134 YDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVY  189 (248)
Q Consensus       134 ~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~  189 (248)
                      +.|+||++.+.+||++ .|||+||+.||.+|++.+.   .||+||.++..++++++.
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~~---~CP~c~~~l~~~dLipik   54 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG---NDPITNEPLSIEEIVEIV   54 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS---BCTTTCCBCCGGGCEECC
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhhcc---CCCccCCcCCHHhceeCC
Confidence            4699999999999988 5999999999999999876   999999999999988764

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.51  E-value=4.6e-15  Score=101.77  Aligned_cols=64  Identities=23%  Similarity=0.471  Sum_probs=56.6

Q ss_pred             CCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCCC
Q psy2200         130 KGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSS  195 (248)
Q Consensus       130 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~  195 (248)
                      ..+.+.|+||++.|.+||+++|||+||+.||..|++...  ..||.|+.++...++.+|+.+.+.+
T Consensus         5 iP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~--~~cP~~~~~l~~~~l~pN~~L~~~I   68 (78)
T d1t1ha_           5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGH--KTCPKSQETLLHAGLTPNYVLKSLI   68 (78)
T ss_dssp             CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTC--CBCTTTCCBCSSCCCEECTTTHHHH
T ss_pred             CCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCC--CCCCcccccCCcccccchHHHHHHH
Confidence            456699999999999999999999999999999998643  3799999999999999998876554

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=2.9e-15  Score=103.32  Aligned_cols=65  Identities=12%  Similarity=0.215  Sum_probs=56.9

Q ss_pred             CCCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCCCC
Q psy2200         130 KGQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSK  196 (248)
Q Consensus       130 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~  196 (248)
                      ..+.+.|+||++.|.+||+++|||+||..||..|+....  ..||+|+..+...++.+++.+.+.+.
T Consensus         4 iP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~--~~cP~c~~~l~~~~l~pN~~L~~~I~   68 (80)
T d2c2la2           4 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG--HFNPVTRSPLTQEQLIPNLAMKEVID   68 (80)
T ss_dssp             CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTC--SSCTTTCCCCCGGGCEECHHHHHHHH
T ss_pred             CCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCC--ccCCCccccccccccccHHHHHHHHH
Confidence            456789999999999999999999999999999998643  48999999999989999887766543

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=4.9e-15  Score=103.11  Aligned_cols=54  Identities=28%  Similarity=0.602  Sum_probs=46.8

Q ss_pred             CCceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCce
Q psy2200         131 GQIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVI  186 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~  186 (248)
                      .+.+.|+||++.+.+|++++|||+||+.||.+|++.+.  ..||+||.++...++.
T Consensus        21 ~~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~--~~CP~Cr~p~~~~~l~   74 (86)
T d1rmda2          21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMG--SYCPSCRYPCFPTDLE   74 (86)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC--SBCTTTCCBCCGGGCB
T ss_pred             ccCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCC--CcCcccCCCCChhhcc
Confidence            34578999999999999999999999999999998643  4899999998766654

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.7e-14  Score=98.00  Aligned_cols=50  Identities=40%  Similarity=0.911  Sum_probs=43.8

Q ss_pred             eeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCc
Q psy2200         134 YDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKV  185 (248)
Q Consensus       134 ~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~  185 (248)
                      ..|+||++.+.++++++|||.||..||..|+..+.  ..||+||..|.....
T Consensus        24 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~--~~CP~Cr~~i~~~~~   73 (79)
T d1fbva4          24 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEG--QGCPFCRCEIKGTEP   73 (79)
T ss_dssp             TBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTC--CSCTTTCCCCCCCCC
T ss_pred             CCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCc--CcCCCCCcCccCCce
Confidence            46999999999999999999999999999998642  379999999986543

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.8e-13  Score=97.62  Aligned_cols=67  Identities=13%  Similarity=0.056  Sum_probs=58.3

Q ss_pred             ccCCCCceeecccccccCCcEEccCCC-ccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCCCCC
Q psy2200         127 ENDKGQIYDCNICLDTAKDAVISMCGH-LFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGGSSK  196 (248)
Q Consensus       127 ~~~~~~~~~C~IC~~~~~~p~~~~CgH-~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~~~  196 (248)
                      ..+..+.|.||||+++|.+||+++||| +||+.||.+|+....   .||+|+.++...+++++..+...+.
T Consensus        16 ~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~---~~P~~~~~l~~~~L~pN~~Lr~~I~   83 (98)
T d1wgma_          16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ---TDPFNRSPLTMDQIRPNTELKEKIQ   83 (98)
T ss_dssp             CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSC---BCTTTCSBCCTTTSEECHHHHHHHH
T ss_pred             hcCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcC---CcccccccccchhhcchHHHHHHHH
Confidence            345567899999999999999998775 899999999998766   9999999999999999988876653

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.38  E-value=8e-14  Score=92.89  Aligned_cols=45  Identities=36%  Similarity=1.033  Sum_probs=39.9

Q ss_pred             eeecccccccCCcE-EccCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         134 YDCNICLDTAKDAV-ISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       134 ~~C~IC~~~~~~p~-~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                      ..|+||++.+.+++ .++|||+||..||.+|++.+.   +||+||..+.
T Consensus         6 d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~~---~CP~CR~~i~   51 (68)
T d1chca_           6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNP---TCPLCKVPVE   51 (68)
T ss_dssp             CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSC---STTTTCCCCC
T ss_pred             CCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhCC---cCCCCCcchH
Confidence            37999999998764 479999999999999999876   9999999875

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4.7e-14  Score=90.15  Aligned_cols=47  Identities=30%  Similarity=0.612  Sum_probs=40.3

Q ss_pred             CceeecccccccCCcEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCC
Q psy2200         132 QIYDCNICLDTAKDAVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDK  184 (248)
Q Consensus       132 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~  184 (248)
                      +.+.|+||++.+.+|++++|||+||..||.+|      ...||+||+.+....
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~------~~~CP~Cr~~~~~~~   51 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS------GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS------SSSCSSCCSSSSCCS
T ss_pred             CCCCCcccCcccCCCEEecCCCHHhHHHHHcC------CCcCcCCCCcccCCC
Confidence            44799999999999999999999999998754      238999999987544

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.6e-13  Score=89.46  Aligned_cols=53  Identities=23%  Similarity=0.572  Sum_probs=41.7

Q ss_pred             ceeecccccccCC-----cEEccCCCccCHhHHHHHHHhCCCCCcccccccccccCCcee
Q psy2200         133 IYDCNICLDTAKD-----AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIP  187 (248)
Q Consensus       133 ~~~C~IC~~~~~~-----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~  187 (248)
                      +..|+||++.+..     .++++|||.||..||..|+....  ..||+||+.+...++..
T Consensus         3 d~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~--~~CP~CR~~i~~~~~~~   60 (65)
T d1g25a_           3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGA--GNCPECGTPLRKSNFRV   60 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTS--SSCTTTCCCCSSCCCEE
T ss_pred             CCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCc--CCCCCCCcCcccccccc
Confidence            3689999986432     25669999999999999997533  37999999998766543

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.32  E-value=2.3e-13  Score=86.64  Aligned_cols=47  Identities=32%  Similarity=0.829  Sum_probs=39.3

Q ss_pred             CceeecccccccCCc---EEc-cCCCccCHhHHHHHHHhCCCCCcccccccccc
Q psy2200         132 QIYDCNICLDTAKDA---VIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAID  181 (248)
Q Consensus       132 ~~~~C~IC~~~~~~p---~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~  181 (248)
                      +...|+||++.+.+.   +.+ .|||.||..||.+|++.+.   +||+||+.|.
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~---~CP~CR~~i~   54 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS---TCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCC---SCSSSCCCSC
T ss_pred             CCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCC---cCCCCCCEeE
Confidence            446799999998743   444 6999999999999999866   9999999763

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=6.5e-14  Score=99.90  Aligned_cols=58  Identities=22%  Similarity=0.535  Sum_probs=49.3

Q ss_pred             CCceeecccccccCCcEEc-cCCCccCHhHHHHHHHhCCCCCcccccccccccCCceeeecCCC
Q psy2200         131 GQIYDCNICLDTAKDAVIS-MCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDKDKVIPVYGRGG  193 (248)
Q Consensus       131 ~~~~~C~IC~~~~~~p~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~  193 (248)
                      .+.+.|+||++.+.+|+.+ +|||+||..||.+|+..     .||+||..+...++.+++.+..
T Consensus        20 ~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~-----~CP~Cr~~~~~~~l~~n~~l~~   78 (97)
T d1jm7b_          20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT-----GCPVCYTPAWIQDLKINRQLDS   78 (97)
T ss_dssp             HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTT-----BCSSSCCBCSCSSCCCCHHHHH
T ss_pred             hhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhc-----cccccCCcCchhhCcccHHHHH
Confidence            4457899999999999876 89999999999999853     7999999998888877765543

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=5.3e-13  Score=83.98  Aligned_cols=47  Identities=21%  Similarity=0.607  Sum_probs=38.4

Q ss_pred             eeecccccccCC----cEEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200         134 YDCNICLDTAKD----AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK  182 (248)
Q Consensus       134 ~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~  182 (248)
                      ++|+||++.+..    +..++|||.||..|+.+|++...  .+||+||+++..
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~--~~CP~CR~~~~~   51 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDEN--GLCPACRKPYPE   51 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSC--CBCTTTCCBCSC
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcC--CCCCccCCcCCC
Confidence            479999998753    24458999999999999998643  379999999864

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=1.5e-11  Score=89.96  Aligned_cols=50  Identities=28%  Similarity=0.596  Sum_probs=39.6

Q ss_pred             eeecccccccCCc------------------EEccCCCccCHhHHHHHHHhCC--CCCcccccccccccC
Q psy2200         134 YDCNICLDTAKDA------------------VISMCGHLFCWPCLHQWLETCP--NRQTCPVCKAAIDKD  183 (248)
Q Consensus       134 ~~C~IC~~~~~~p------------------~~~~CgH~fC~~Ci~~~~~~~~--~~~~CP~Cr~~~~~~  183 (248)
                      ..|+||++.+..+                  .+++|||.||..||..|++...  +..+||+||+.+..+
T Consensus        26 ~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T d1v87a_          26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             ccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccC
Confidence            4799999987532                  4678999999999999998643  245899999987543

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4.2e-11  Score=83.42  Aligned_cols=45  Identities=29%  Similarity=0.792  Sum_probs=36.8

Q ss_pred             eecccccccCC------------------cEEccCCCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200         135 DCNICLDTAKD------------------AVISMCGHLFCWPCLHQWLETCPNRQTCPVCKAAIDK  182 (248)
Q Consensus       135 ~C~IC~~~~~~------------------p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~  182 (248)
                      .|+||++.+.+                  .+.++|||.||..||.+|++.+.   +||+||+.+..
T Consensus        23 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~---~CP~CR~~~~~   85 (88)
T d3dplr1          23 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ---VCPLDNREWEF   85 (88)
T ss_dssp             CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCS---BCSSSCSBCCE
T ss_pred             cCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCC---cCCCCCCcccc
Confidence            57888765543                  35569999999999999999876   99999998753

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.95  E-value=2.1e-10  Score=73.97  Aligned_cols=50  Identities=20%  Similarity=0.538  Sum_probs=40.8

Q ss_pred             CceeecccccccCCcEEccC-----CCccCHhHHHHHHHhCCCCCccccccccccc
Q psy2200         132 QIYDCNICLDTAKDAVISMC-----GHLFCWPCLHQWLETCPNRQTCPVCKAAIDK  182 (248)
Q Consensus       132 ~~~~C~IC~~~~~~p~~~~C-----gH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~  182 (248)
                      +...|.||++.+.++.+.+|     +|.||..||.+|+.... ..+||+||+.+..
T Consensus         5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~-~~~CP~Cr~~~~~   59 (60)
T d1vyxa_           5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR-NTACQICGVVYNT   59 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT-CSBCTTTCCBCCC
T ss_pred             CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCC-CCCCcccCCeeec
Confidence            44689999998888777765     49999999999997643 4589999998863

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.58  E-value=1e-08  Score=69.34  Aligned_cols=46  Identities=22%  Similarity=0.458  Sum_probs=34.6

Q ss_pred             CCCceeccccCCCCCCceEeccCccc-ccceeccccCCCCCCCCCCCC
Q psy2200          31 KSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGGSEIDPRDEV   77 (248)
Q Consensus        31 ~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~~~   77 (248)
                      ..+.|.|+||++++.|||+++|||+| ..|+..|+..+ ...+|....
T Consensus         5 iP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~-~~~cP~~~~   51 (78)
T d1t1ha_           5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG-HKTCPKSQE   51 (78)
T ss_dssp             CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT-CCBCTTTCC
T ss_pred             CCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHC-CCCCCcccc
Confidence            45679999999999999999999999 44666776543 234554433

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.2e-08  Score=72.73  Aligned_cols=48  Identities=21%  Similarity=0.416  Sum_probs=36.5

Q ss_pred             CCceeccccCCCCCCceEeccCccc-ccceeccccCCC-CCCCCCCCCCC
Q psy2200          32 SQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGG-SEIDPRDEVPP   79 (248)
Q Consensus        32 ~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~-~~~~p~~~~p~   79 (248)
                      ...++|+||++.+.+||.++|||+| ..|+..|+.+.. ...+|....+-
T Consensus        19 ~~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~   68 (103)
T d1jm7a_          19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI   68 (103)
T ss_dssp             HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCC
T ss_pred             ccCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcC
Confidence            3458999999999999999999999 556777875543 35677654433

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=6e-08  Score=61.08  Aligned_cols=32  Identities=22%  Similarity=0.202  Sum_probs=26.2

Q ss_pred             CCceeccccCCCCCCceEeccCccccc-ceecc
Q psy2200          32 SQIYDCNICFDTAKDAVISMCGHLFWL-KFFYW   63 (248)
Q Consensus        32 ~~~~~C~iCld~~~~~v~~~CGH~f~~-cv~~~   63 (248)
                      ...++|+||+|.+.+|++++|||+|+. |+.+|
T Consensus         4 ~~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~   36 (56)
T d1bora_           4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS   36 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS
T ss_pred             cCCCCCcccCcccCCCEEecCCCHHhHHHHHcC
Confidence            345799999999999999999999944 55433

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=2.3e-08  Score=67.81  Aligned_cols=46  Identities=17%  Similarity=0.211  Sum_probs=35.5

Q ss_pred             CCCCceeccccCCCCCCceEeccCcccc-cceeccccCCCCCCCCCCC
Q psy2200          30 DKSQIYDCNICFDTAKDAVISMCGHLFW-LKFFYWPGRGGSEIDPRDE   76 (248)
Q Consensus        30 ~~~~~~~C~iCld~~~~~v~~~CGH~f~-~cv~~~y~Rg~~~~~p~~~   76 (248)
                      +..+.|.|+||++++++||+++|||+|+ .|+..|+.+++ ..+|...
T Consensus         3 eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~-~~cP~c~   49 (80)
T d2c2la2           3 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG-HFNPVTR   49 (80)
T ss_dssp             CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTC-SSCTTTC
T ss_pred             CCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCC-ccCCCcc
Confidence            4567899999999999999999999994 57777776543 3455443

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.42  E-value=1.4e-08  Score=69.85  Aligned_cols=46  Identities=24%  Similarity=0.338  Sum_probs=34.5

Q ss_pred             CCCceeccccCCCCCCceEeccCccc-ccceeccccCCCCCCCCCCCC
Q psy2200          31 KSQIYDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGGSEIDPRDEV   77 (248)
Q Consensus        31 ~~~~~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~~~   77 (248)
                      ....+.|+||+|.+.+||+++|||+| ..|+..|+..++ ..+|....
T Consensus        20 ~~~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~-~~CP~Cr~   66 (86)
T d1rmda2          20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMG-SYCPSCRY   66 (86)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC-SBCTTTCC
T ss_pred             hccCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCC-CcCcccCC
Confidence            34558999999999999999999999 556777765332 34665544

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=2.8e-07  Score=64.75  Aligned_cols=47  Identities=13%  Similarity=-0.048  Sum_probs=35.5

Q ss_pred             CCCCCceeccccCCCCCCceEeccCc-ccc-cceeccccCCCCCCCCCCCC
Q psy2200          29 NDKSQIYDCNICFDTAKDAVISMCGH-LFW-LKFFYWPGRGGSEIDPRDEV   77 (248)
Q Consensus        29 ~~~~~~~~C~iCld~~~~~v~~~CGH-~f~-~cv~~~y~Rg~~~~~p~~~~   77 (248)
                      .+..+.|.|+||++++.|||+++||| +|+ .|+..|+.++.  .+|.+..
T Consensus        17 ~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~--~~P~~~~   65 (98)
T d1wgma_          17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ--TDPFNRS   65 (98)
T ss_dssp             CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSC--BCTTTCS
T ss_pred             cCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcC--Ccccccc
Confidence            34566799999999999999999875 784 57888876543  4554433

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.7e-07  Score=65.33  Aligned_cols=46  Identities=28%  Similarity=0.667  Sum_probs=34.5

Q ss_pred             ceeecccccccCC---cEEccCCCccCHhHHHHHHHhC-----CCCCccccccc
Q psy2200         133 IYDCNICLDTAKD---AVISMCGHLFCWPCLHQWLETC-----PNRQTCPVCKA  178 (248)
Q Consensus       133 ~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~-----~~~~~CP~Cr~  178 (248)
                      ...|+||++.+..   +..++|||.||..|+..|++..     ....+||.|+-
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            4689999998753   3455899999999999999743     11347998643

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=3.1e-07  Score=64.36  Aligned_cols=42  Identities=19%  Similarity=0.283  Sum_probs=32.1

Q ss_pred             CCceeccccCCCCCCceE-eccCccc-ccceeccccCCCCCCCCCCCC
Q psy2200          32 SQIYDCNICFDTAKDAVI-SMCGHLF-WLKFFYWPGRGGSEIDPRDEV   77 (248)
Q Consensus        32 ~~~~~C~iCld~~~~~v~-~~CGH~f-~~cv~~~y~Rg~~~~~p~~~~   77 (248)
                      ...+.|+||++++.+||+ ++|||+| ..|+..|+..    .+|....
T Consensus        20 ~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~----~CP~Cr~   63 (97)
T d1jm7b_          20 EKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT----GCPVCYT   63 (97)
T ss_dssp             HHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTT----BCSSSCC
T ss_pred             hhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhc----cccccCC
Confidence            445799999999999997 5899999 5577778642    3665543

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.10  E-value=1.6e-07  Score=59.04  Aligned_cols=38  Identities=21%  Similarity=0.233  Sum_probs=30.9

Q ss_pred             eccccCCCCCCceEec-cCccc-ccceeccccCCCCCCCCCC
Q psy2200          36 DCNICFDTAKDAVISM-CGHLF-WLKFFYWPGRGGSEIDPRD   75 (248)
Q Consensus        36 ~C~iCld~~~~~v~~~-CGH~f-~~cv~~~y~Rg~~~~~p~~   75 (248)
                      -|+||++++.+||+++ |||+| ..|+.+|+.+.+  .+|..
T Consensus         2 ~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~~--~CP~c   41 (56)
T d2baya1           2 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG--NDPIT   41 (56)
T ss_dssp             CCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS--BCTTT
T ss_pred             CCccCCchHHhcCccCCCCCcccHHHHHHHHhhcc--CCCcc
Confidence            5999999999999985 99999 778888977643  45543

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=2.6e-07  Score=62.32  Aligned_cols=41  Identities=29%  Similarity=0.474  Sum_probs=31.7

Q ss_pred             eeccccCCCCCCceEeccCccc-ccceeccccCCCCCCCCCCC
Q psy2200          35 YDCNICFDTAKDAVISMCGHLF-WLKFFYWPGRGGSEIDPRDE   76 (248)
Q Consensus        35 ~~C~iCld~~~~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~~   76 (248)
                      ..|+||+|.+.++|+++|||.| ..|+..|+..+ ...+|...
T Consensus        24 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~-~~~CP~Cr   65 (79)
T d1fbva4          24 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESE-GQGCPFCR   65 (79)
T ss_dssp             TBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTT-CCSCTTTC
T ss_pred             CCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHC-cCcCCCCC
Confidence            4699999999999999999999 55777887533 23466543

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=97.93  E-value=9.8e-07  Score=57.58  Aligned_cols=40  Identities=20%  Similarity=0.466  Sum_probs=30.5

Q ss_pred             eeccccCCCCCCceE-eccCccc-ccceeccccCCCCCCCCCCC
Q psy2200          35 YDCNICFDTAKDAVI-SMCGHLF-WLKFFYWPGRGGSEIDPRDE   76 (248)
Q Consensus        35 ~~C~iCld~~~~~v~-~~CGH~f-~~cv~~~y~Rg~~~~~p~~~   76 (248)
                      -+|+||+|.+.++++ ++|||.| ..|+.+|+.+.  ..+|...
T Consensus         6 d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~--~~CP~CR   47 (68)
T d1chca_           6 ERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN--PTCPLCK   47 (68)
T ss_dssp             CCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS--CSTTTTC
T ss_pred             CCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhC--CcCCCCC
Confidence            369999999987755 8999999 66788887654  3566543

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.72  E-value=8.7e-06  Score=50.60  Aligned_cols=42  Identities=26%  Similarity=0.450  Sum_probs=30.1

Q ss_pred             CCceeccccCCCCCC---ceEe-ccCccc-ccceeccccCCCCCCCCCC
Q psy2200          32 SQIYDCNICFDTAKD---AVIS-MCGHLF-WLKFFYWPGRGGSEIDPRD   75 (248)
Q Consensus        32 ~~~~~C~iCld~~~~---~v~~-~CGH~f-~~cv~~~y~Rg~~~~~p~~   75 (248)
                      ++..+|+||+|.+.+   ++.+ .|||.| ..|+.+|+.+.  ..+|..
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~--~~CP~C   49 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH--STCPLC   49 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC--CSCSSS
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhC--CcCCCC
Confidence            345679999999864   3343 699999 77888998764  345543

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=5.7e-06  Score=53.29  Aligned_cols=43  Identities=21%  Similarity=0.234  Sum_probs=30.1

Q ss_pred             ceeccccCCCCC-----CceEeccCccc-ccceeccccCCCCCCCCCCCC
Q psy2200          34 IYDCNICFDTAK-----DAVISMCGHLF-WLKFFYWPGRGGSEIDPRDEV   77 (248)
Q Consensus        34 ~~~C~iCld~~~-----~~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~~~~   77 (248)
                      ...|+||++.+.     ..++++|||.| ..|+.+|+.++. ..+|....
T Consensus         3 d~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~-~~CP~CR~   51 (65)
T d1g25a_           3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGA-GNCPECGT   51 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTS-SSCTTTCC
T ss_pred             CCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCc-CCCCCCCc
Confidence            468999998642     23678999999 667888876543 34665543

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=1.2e-05  Score=49.27  Aligned_cols=39  Identities=13%  Similarity=0.324  Sum_probs=27.0

Q ss_pred             eeccccCCCCCC----ceEeccCccc-ccceeccccCCCCCCCCC
Q psy2200          35 YDCNICFDTAKD----AVISMCGHLF-WLKFFYWPGRGGSEIDPR   74 (248)
Q Consensus        35 ~~C~iCld~~~~----~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~   74 (248)
                      .+|+||+|.+.+    ++.++|||.| ..|+.+|+..+. ..+|.
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~-~~CP~   44 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDEN-GLCPA   44 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSC-CBCTT
T ss_pred             CCCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcC-CCCCc
Confidence            489999987643    3456899999 667778875432 34554

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.16  E-value=5.6e-05  Score=53.85  Aligned_cols=44  Identities=25%  Similarity=0.391  Sum_probs=31.1

Q ss_pred             CCceeccccCCCCCC------------------ceEeccCccc-ccceeccccCCC---CCCCCCC
Q psy2200          32 SQIYDCNICFDTAKD------------------AVISMCGHLF-WLKFFYWPGRGG---SEIDPRD   75 (248)
Q Consensus        32 ~~~~~C~iCld~~~~------------------~v~~~CGH~f-~~cv~~~y~Rg~---~~~~p~~   75 (248)
                      ....+|+||++.+.+                  ...++|||+| ..|+..|+.+..   ...+|..
T Consensus        23 ~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~C   88 (114)
T d1v87a_          23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSC   88 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTT
T ss_pred             cccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccc
Confidence            345689999987654                  2468899999 778888975432   2456654

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.00033  Score=47.39  Aligned_cols=38  Identities=24%  Similarity=0.532  Sum_probs=27.7

Q ss_pred             eeccccCCCCCC------------------ceEeccCccc-ccceeccccCCCCCCCCC
Q psy2200          35 YDCNICFDTAKD------------------AVISMCGHLF-WLKFFYWPGRGGSEIDPR   74 (248)
Q Consensus        35 ~~C~iCld~~~~------------------~v~~~CGH~f-~~cv~~~y~Rg~~~~~p~   74 (248)
                      -+|+||++.+.+                  ++.++|||.| ..|+.+|+....  .+|.
T Consensus        22 d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~--~CP~   78 (88)
T d3dplr1          22 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ--VCPL   78 (88)
T ss_dssp             CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCS--BCSS
T ss_pred             CcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCC--cCCC
Confidence            358888766544                  4668999999 778999987653  4554

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.0013  Score=44.64  Aligned_cols=31  Identities=16%  Similarity=0.450  Sum_probs=22.2

Q ss_pred             CceeccccCCCCC--C-ceEeccCccccc-ceecc
Q psy2200          33 QIYDCNICFDTAK--D-AVISMCGHLFWL-KFFYW   63 (248)
Q Consensus        33 ~~~~C~iCld~~~--~-~v~~~CGH~f~~-cv~~~   63 (248)
                      ...+|+||++...  + ++++.|||.||. |+..|
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~   38 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQY   38 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHH
T ss_pred             CCCcCccCCCcccCCceEEECCCCCEeCCcCHHHH
Confidence            4678999998865  3 455689999944 45444

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=95.28  E-value=0.001  Score=41.36  Aligned_cols=44  Identities=14%  Similarity=0.186  Sum_probs=32.4

Q ss_pred             CCceeccccCCCCCCceEeccC-----ccc-ccceeccccCCCCCCCCCC
Q psy2200          32 SQIYDCNICFDTAKDAVISMCG-----HLF-WLKFFYWPGRGGSEIDPRD   75 (248)
Q Consensus        32 ~~~~~C~iCld~~~~~v~~~CG-----H~f-~~cv~~~y~Rg~~~~~p~~   75 (248)
                      ++...|.||++...++.+.+|+     |.| -.|+.+|+...+...+|..
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~C   53 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQIC   53 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTT
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCccc
Confidence            3456799999998888888875     999 6788888754444456643

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.45  E-value=0.0064  Score=38.45  Aligned_cols=35  Identities=29%  Similarity=0.768  Sum_probs=29.8

Q ss_pred             ceeecccccccCCcEEccC----CCccCHhHHHHHHHhC
Q psy2200         133 IYDCNICLDTAKDAVISMC----GHLFCWPCLHQWLETC  167 (248)
Q Consensus       133 ~~~C~IC~~~~~~p~~~~C----gH~fC~~Ci~~~~~~~  167 (248)
                      .+.|.+|.+.+.+.-...|    +|.||..|-...++..
T Consensus         8 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sik~q   46 (80)
T d2cs3a1           8 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQ   46 (80)
T ss_dssp             SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHH
T ss_pred             ceeeeeehhhhcCCceEeCCCCcCCceeccccHHHHHhc
Confidence            3789999999998866666    7999999999998764

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.06  E-value=0.62  Score=29.97  Aligned_cols=34  Identities=18%  Similarity=0.370  Sum_probs=26.2

Q ss_pred             CCCCceeecccccccCCcEEcc---CCCccCHhHHHHH
Q psy2200         129 DKGQIYDCNICLDTAKDAVISM---CGHLFCWPCLHQW  163 (248)
Q Consensus       129 ~~~~~~~C~IC~~~~~~p~~~~---CgH~fC~~Ci~~~  163 (248)
                      ....+..|.|| +.+..-.++|   |+-+|+..|+.+.
T Consensus        11 ~v~~D~mC~vC-~v~t~~~l~pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_          11 PVVNDEMCDVC-EVWTAESLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCCSCCCTTT-CCCCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred             CCCcCcccccc-CcccccceecceeecchhhHHHHHHh
Confidence            34455789999 6666666776   6889999999986

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.69  E-value=0.28  Score=24.53  Aligned_cols=15  Identities=27%  Similarity=0.906  Sum_probs=12.7

Q ss_pred             CCceeccccCCCCCC
Q psy2200          32 SQIYDCNICFDTAKD   46 (248)
Q Consensus        32 ~~~~~C~iCld~~~~   46 (248)
                      +..|.|++|.++|+.
T Consensus         2 eqvftcs~cqe~f~r   16 (30)
T d2dlqa3           2 EQVFTCSVCQETFRR   16 (30)
T ss_dssp             CCCEECSSSCCEESS
T ss_pred             cceEEeHHHHHHHHH
Confidence            457999999999875