Psyllid ID: psy2206
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | 2.2.26 [Sep-21-2011] | |||||||
| Q54EX5 | 490 | Serine palmitoyltransfera | yes | N/A | 0.755 | 0.663 | 0.369 | 3e-60 | |
| Q9XVI6 | 512 | Serine palmitoyltransfera | yes | N/A | 0.753 | 0.632 | 0.350 | 1e-57 | |
| P48241 | 562 | Serine palmitoyltransfera | yes | N/A | 0.774 | 0.592 | 0.337 | 9e-55 | |
| Q9NUV7 | 552 | Serine palmitoyltransfera | yes | N/A | 0.353 | 0.275 | 0.614 | 2e-53 | |
| O15270 | 562 | Serine palmitoyltransfera | no | N/A | 0.330 | 0.252 | 0.664 | 2e-53 | |
| O54694 | 560 | Serine palmitoyltransfera | yes | N/A | 0.330 | 0.253 | 0.657 | 6e-53 | |
| P97363 | 560 | Serine palmitoyltransfera | yes | N/A | 0.330 | 0.253 | 0.657 | 8e-53 | |
| Q8BG54 | 563 | Serine palmitoyltransfera | no | N/A | 0.334 | 0.255 | 0.593 | 2e-47 | |
| Q20375 | 558 | Serine palmitoyltransfera | no | N/A | 0.341 | 0.263 | 0.592 | 2e-47 | |
| Q9LSZ9 | 489 | Long chain base biosynthe | yes | N/A | 0.320 | 0.282 | 0.5 | 1e-44 |
| >sp|Q54EX5|SPTC2_DICDI Serine palmitoyltransferase 2 OS=Dictyostelium discoideum GN=sptB PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 233 bits (593), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 143/387 (36%), Positives = 203/387 (52%), Gaps = 62/387 (16%)
Query: 38 GYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTEST- 96
GY L+ +F FY R +Y RI D ++RP+ S+ GA I + R + Y + TG ++
Sbjct: 52 GYAPLFVEFEYFYQRRMYGRIKDAWDRPINSIAGAWIDVMPRASKHYSQRLELTGGKTIK 111
Query: 97 CLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASMLSKGASKSNILFQAHT 156
CLNL SYNYLGF +N G ++ +S+ + G S S E+ LS+ L A
Sbjct: 112 CLNLGSYNYLGFAQNEGPVADKVIDSIYKYGVYTGSTSAEVG--LSEPQRDLENL-TARF 168
Query: 157 NGFANGISKSNGLLSSNGGYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDR 216
G + I G +++G P L K L S D N +
Sbjct: 169 VGKEDAIVFEMGFATNSGTLPALIGKGGLIIS--------DSLNHASLA----------- 209
Query: 217 ETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSAPSSL 276
TG ++T + + + ++ E +ES+ Q
Sbjct: 210 -----------TGCKNTGCKVKVFRH----NDSKHLEEVIRESIIQ-------------- 240
Query: 277 EAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHS 336
GQP + +PW ILI++EGI+SM+G + LPEI+ +K KYK YLY+DEAHS
Sbjct: 241 ----------GQPRTHRPWTMILIIIEGIYSMEGEVANLPEILAIKKKYKCYLYIDEAHS 290
Query: 337 IGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYA 396
IGALG TGRG+ +Y+GIDP+E+DILMGTYTKSFG++GGYVA KS ID++R +S + YA
Sbjct: 291 IGALGKTGRGIVDYYGIDPKEIDILMGTYTKSFGAIGGYVASDKSLIDHLRQSSFSQVYA 350
Query: 397 TSMPPPVAMQILTSMRIIMGLENGDEG 423
SM P A+Q L ++R+IMG + D G
Sbjct: 351 NSMSPVCAVQALEALRVIMGEDGTDTG 377
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Catalytic subunit of serine palmitoyltransferase (SPT), which catalyzes the committed step in the synthesis of sphingolipids, the condensation of serine with palmitoyl CoA to form the long chain base 3-ketosphinganine. Dictyostelium discoideum (taxid: 44689) EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 5EC: 0 |
| >sp|Q9XVI6|SPTC3_CAEEL Serine palmitoyltransferase 3 OS=Caenorhabditis elegans GN=sptl-3 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 224 bits (570), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 135/385 (35%), Positives = 198/385 (51%), Gaps = 61/385 (15%)
Query: 39 YPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCL 98
+ L F Y+ ++YR+ D NRP++ VPGAI+ +KDR T D+GWT KYTGTES +
Sbjct: 78 FQPLGNSFDATYTDHIYRQSTDVVNRPISGVPGAIVRLKDRYTDDHGWTQKYTGTESEVI 137
Query: 99 NLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASMLSKGASKSNILFQAHTNG 158
NL SYNYLGF +G+C E + + + G EI + ++ + +S I A
Sbjct: 138 NLGSYNYLGFSHRSGVCAEAAAAHIDKYGINCGGSRQEIGNHVAHKSVESTI---AQYLN 194
Query: 159 FANGISKSNGLLSSNGGYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRET 218
+ I G +++ P L +K G++I + DR
Sbjct: 195 VEDAIVFPMGFATNSMNIPSLVDK-------------------------GSLI-LSDR-- 226
Query: 219 PDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSAPSSLEA 278
+ + C L+ + + F N ER ALC S
Sbjct: 227 ------LNHASLVTGC-RLSGAHTVVFRHNDASDCERKLRD------ALCGVS------- 266
Query: 279 GLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIG 338
P +G+ + K+LI++EGI+SM+G+IV LP + +K KY YL++DEAHSIG
Sbjct: 267 ----------PKTGEKYNKVLIIIEGIYSMEGTIVNLPAFIAVKKKYNCYLFLDEAHSIG 316
Query: 339 ALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATS 398
A+GP+GRGV EY+G +PR++DI+MGT TKSF S GGY+ GSK ID+IR S Y +
Sbjct: 317 AVGPSGRGVAEYWGCNPRDIDIMMGTLTKSFASAGGYMGGSKKVIDHIRRYSAGTCYGVT 376
Query: 399 MPPPVAMQILTSMRIIMGLENGDEG 423
M PP+ Q+ ++ I+ G + D G
Sbjct: 377 MSPPLIAQVERAVLIMSGKDGTDIG 401
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Component of the serine palmitoyltransferase (SPT) that catalyzes the first committed step in sphingolipid biosynthesis, which is the condensation of an acyl-CoA species and L-serine. The catalytic core is composed of a heterodimer of sptl-1 and sptl-2 or sptl-1 and sptl-3 (By similarity). Required for the specification of abicobasal polarity and development of the gut lumen. Caenorhabditis elegans (taxid: 6239) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 5 EC: 0 |
| >sp|P48241|LCB2_KLULA Serine palmitoyltransferase 2 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=LCB2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 214 bits (545), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 135/400 (33%), Positives = 202/400 (50%), Gaps = 67/400 (16%)
Query: 34 MVKFGYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGT 93
M + G + F FY R + +RI DCF+RP T VPG I DR + + F Y GT
Sbjct: 93 MEQDGLAPWFSTFESFYVRRLKQRIDDCFSRPTTGVPGRFIRCLDRVSHNLNDYFTYPGT 152
Query: 94 ESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASMLSKGASKSNILFQ 153
S CLNL+SYNYLGF ++ G CT + E+ + G P I G + +++ +
Sbjct: 153 TSMCLNLSSYNYLGFAQSEGQCTTAALEATDKYGVYSGGPRTRI------GTTDLHVMTE 206
Query: 154 AHTNGFANGISKSNGLLSSNGGYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITI 213
+ F + K + +L S G Y F++ ++
Sbjct: 207 KYVAQF---VGKEDAILFSMG-----YGTNANFFNSFL---------------------- 236
Query: 214 KDRETPDYGWTFKYTGTESTCLNLA-SYNYLGFGENTGLCTERSKESVKQSGCALCS--P 270
+S CL ++ S N+ + V+ SG A+ +
Sbjct: 237 -----------------DSKCLVISDSLNHTSI-----------RTGVRLSGAAVKTFKH 268
Query: 271 SAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLY 330
+ +LE +++ +++GQ + +PW+KI+I VEG++SM+G++ LP++V LK KYK YL+
Sbjct: 269 NDMRALEKLIREQIVQGQSKTHRPWKKIIICVEGLYSMEGTMANLPKLVELKKKYKCYLF 328
Query: 331 VDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANS 390
VDEAHSIGA+GP+GRGV ++FGI ++DI+MGT TKSFG+ GGY+A K ID R +
Sbjct: 329 VDEAHSIGAMGPSGRGVCDFFGIPCSDIDIMMGTLTKSFGAAGGYIAADKWIIDRFRLDL 388
Query: 391 HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHSSI 430
Y P PV QI +S++ I G N EG R I
Sbjct: 389 TTPHYGEPTPAPVLAQIASSLKTITGDINPGEGQERLQRI 428
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Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 5 EC: 0 |
| >sp|Q9NUV7|SPTC3_HUMAN Serine palmitoyltransferase 3 OS=Homo sapiens GN=SPTLC3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 210 bits (534), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 94/153 (61%), Positives = 125/153 (81%)
Query: 274 SSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDE 333
SLE L+ A++ GQP + + W+KILI+VEG++SM+GSIV LP+I+ LK KYKAYLY+DE
Sbjct: 278 QSLEKLLRDAVIYGQPRTRRAWKKILILVEGVYSMEGSIVHLPQIIALKKKYKAYLYIDE 337
Query: 334 AHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVR 393
AHSIGA+GPTGRGVTE+FG+DP EVD+LMGT+TKSFG+ GGY+AG K +DY+R +SH
Sbjct: 338 AHSIGAVGPTGRGVTEFFGLDPHEVDVLMGTFTKSFGASGGYIAGRKDLVDYLRVHSHSA 397
Query: 394 SYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426
YA+SM PP+A QI+ S+++IMGL+ +G R
Sbjct: 398 VYASSMSPPIAEQIIRSLKLIMGLDGTTQGLQR 430
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Serine palmitoyltransferase (SPT). The heterodimer formed with LCB1/SPTLC1 constitutes the catalytic core. The composition of the serine palmitoyltransferase (SPT) complex determines the substrate preference. The SPTLC1-SPTLC3-SSSPTA isozyme uses both C14-CoA and C16-CoA as substrates, while the SPTLC1-SPTLC3-SSSPTB has the ability to use a broader range of acyl-CoAs without apparent preference. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 5 EC: 0 |
| >sp|O15270|SPTC2_HUMAN Serine palmitoyltransferase 2 OS=Homo sapiens GN=SPTLC2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (533), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 95/143 (66%), Positives = 119/143 (83%)
Query: 274 SSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDE 333
SLE L+ A++ GQP + +PW+KILI+VEGI+SM+GSIVRLPE++ LK KYKAYLY+DE
Sbjct: 286 QSLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDE 345
Query: 334 AHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVR 393
AHSIGALGPTGRGV EYFG+DP +VD++MGT+TKSFG+ GGY+ G K IDY+R +SH
Sbjct: 346 AHSIGALGPTGRGVVEYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSA 405
Query: 394 SYATSMPPPVAMQILTSMRIIMG 416
YATS+ PPV QI+TSM+ IMG
Sbjct: 406 VYATSLSPPVVEQIITSMKCIMG 428
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Serine palmitoyltransferase (SPT). The heterodimer formed with LCB1/SPTLC1 constitutes the catalytic core. The composition of the serine palmitoyltransferase (SPT) complex determines the substrate preference. The SPTLC1-SPTLC2-SSSPTA complex shows a strong preference for C16-CoA substrate, while the SPTLC1-SPTLC2-SSSPTB complex displays a preference for C18-CoA substrate. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 5 EC: 0 |
| >sp|O54694|SPTC2_CRIGR Serine palmitoyltransferase 2 OS=Cricetulus griseus GN=SPTLC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 208 bits (530), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 94/143 (65%), Positives = 120/143 (83%)
Query: 274 SSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDE 333
SLE L+ A++ GQP + +PW+KILI+VEGI+SM+GSIVRLPE++ LK KYKAYLY+DE
Sbjct: 284 QSLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDE 343
Query: 334 AHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVR 393
AHSIGALGP+GRGV +YFG+DP +VD++MGT+TKSFG+ GGY+ G K+ IDY+R +SH
Sbjct: 344 AHSIGALGPSGRGVVDYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKALIDYLRTHSHSA 403
Query: 394 SYATSMPPPVAMQILTSMRIIMG 416
YATSM PPV QI+TSM+ IMG
Sbjct: 404 VYATSMSPPVMEQIITSMKCIMG 426
|
Serine palmitoyltransferase (SPT). The heterodimer formed with LCB1/SPTLC1 constitutes the catalytic core. The composition of the serine palmitoyltransferase (SPT) complex determines the substrate preference. The SPTLC1-SPTLC2-SSSPTA complex shows a strong preference for C16-CoA substrate, while the SPTLC1-SPTLC2-SSSPTB complex displays a preference for C18-CoA substrate. Cricetulus griseus (taxid: 10029) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 5 EC: 0 |
| >sp|P97363|SPTC2_MOUSE Serine palmitoyltransferase 2 OS=Mus musculus GN=Sptlc2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 208 bits (529), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 94/143 (65%), Positives = 119/143 (83%)
Query: 274 SSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDE 333
SLE L+ A++ GQP + +PW+KILI+VEGI+SM+GSIVRLPE++ LK KYKAYLY+DE
Sbjct: 284 QSLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDE 343
Query: 334 AHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVR 393
AHSIGALGP+GRGV +YFG+DP +VD++MGT+TKSFG+ GGY+ G K IDY+R +SH
Sbjct: 344 AHSIGALGPSGRGVVDYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSA 403
Query: 394 SYATSMPPPVAMQILTSMRIIMG 416
YATSM PPV QI+TSM+ IMG
Sbjct: 404 VYATSMSPPVMEQIITSMKCIMG 426
|
Serine palmitoyltransferase (SPT). The heterodimer formed with LCB1/SPTLC1 constitutes the catalytic core. The composition of the serine palmitoyltransferase (SPT) complex determines the substrate preference. The SPTLC1-SPTLC2-SSSPTA complex shows a strong preference for C16-CoA substrate, while the SPTLC1-SPTLC2-SSSPTB complex displays a preference for C18-CoA substrate. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 5 EC: 0 |
| >sp|Q8BG54|SPTC3_MOUSE Serine palmitoyltransferase 3 OS=Mus musculus GN=Sptlc3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 190 bits (483), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 86/145 (59%), Positives = 112/145 (77%)
Query: 274 SSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDE 333
+LE L++A++ GQP +G+ W+KILIVVEG++SM+GSIV L +IV LK KYKAYLY+DE
Sbjct: 278 ENLEKLLREAIIRGQPGTGRAWKKILIVVEGVYSMEGSIVNLAQIVALKKKYKAYLYIDE 337
Query: 334 AHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVR 393
AHSIG GPTGRGV E FG+DP ++D+ MGT+TKSF GGY+ G K +DY+R SH
Sbjct: 338 AHSIGCTGPTGRGVRELFGLDPEDIDVYMGTFTKSFSGSGGYIGGKKEIVDYLRMQSHST 397
Query: 394 SYATSMPPPVAMQILTSMRIIMGLE 418
+YATSM P VA Q++ S++I MG E
Sbjct: 398 TYATSMSPVVAAQLIRSLKITMGYE 422
|
Serine palmitoyltransferase (SPT). The heterodimer formed with LCB1/SPTLC1 constitutes the catalytic core. The composition of the serine palmitoyltransferase (SPT) complex determines the substrate preference. The SPTLC1-SPTLC3-SSSPTA isozyme uses both C14-CoA and C16-CoA as substrates, while the SPTLC1-SPTLC3-SSSPTB has the ability to use a broader range of acyl-CoAs without apparent preference. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 5 EC: 0 |
| >sp|Q20375|SPTC2_CAEEL Serine palmitoyltransferase 2 OS=Caenorhabditis elegans GN=sptl-2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 190 bits (482), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 90/152 (59%), Positives = 118/152 (77%)
Query: 275 SLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEA 334
SLE L+ A+ G P + +P++KILI+VEGI+SM+GSI LP I+ LK KY+AYLY+DEA
Sbjct: 292 SLERILRDAIAYGNPKTHRPYKKILIIVEGIYSMEGSICNLPGIIALKKKYQAYLYLDEA 351
Query: 335 HSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRS 394
HSIGA+G TG+GV EY+G DP++VDILMGT+TKSFG+ GGY+AGSK T+D++RA S
Sbjct: 352 HSIGAMGKTGKGVVEYWGCDPKDVDILMGTFTKSFGAAGGYIAGSKRTVDHLRAASPTGY 411
Query: 395 YATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426
Y++ M PP+A QI TSM IIMG + +G R
Sbjct: 412 YSSPMSPPIAQQIYTSMSIIMGKDGTKDGAQR 443
|
Component of the serine palmitoyltransferase (SPT) that catalyzes the first committed step in sphingolipid biosynthesis, which is the condensation of an acyl-CoA species and L-serine. The catalytic core is composed of a heterodimer of sptl-1 and sptl-2 or sptl-1 and sptl-3 (By similarity). Required for the specification of abicobasal polarity and development of the gut lumen. Caenorhabditis elegans (taxid: 6239) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 5 EC: 0 |
| >sp|Q9LSZ9|LCB2A_ARATH Long chain base biosynthesis protein 2a OS=Arabidopsis thaliana GN=LCB2a PE=1 SV=1 | Back alignment and function description |
|---|
Score = 181 bits (458), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 80/160 (50%), Positives = 118/160 (73%)
Query: 271 SAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLY 330
+ PS LE L++ + EGQP + +PW+KI++VVEGI+SM+G I LPE+V + KYKAY+Y
Sbjct: 215 NTPSHLERVLREQIAEGQPRTHRPWKKIIVVVEGIYSMEGEICHLPEVVAICKKYKAYVY 274
Query: 331 VDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANS 390
+DEAHSIGA+G TG+G+ E G+D +VD++MGT+TKSFGS GGY+AGSK I Y++
Sbjct: 275 LDEAHSIGAIGKTGKGICELLGVDTADVDVMMGTFTKSFGSCGGYIAGSKELIQYLKHQC 334
Query: 391 HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHSSI 430
YATS+P P A QI++++++I+G + + G + + I
Sbjct: 335 PAHLYATSIPTPSAQQIISAIKVILGEDGSNRGAQKLARI 374
|
Serine palmitoyltransferase (SPT). The heterodimer formed with LCB1 constitutes the catalytic core. Involved in the regulation of the programmed cell death (PCD) signaling pathway. Plays an important role during male gametogenesis and embryogenesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 3 EC: . EC: 1 EC: . EC: 5 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | ||||||
| 157108517 | 549 | serine palmitoyltransferase [Aedes aegyp | 0.762 | 0.597 | 0.439 | 4e-87 | |
| 170037084 | 552 | serine palmitoyltransferase [Culex quinq | 0.762 | 0.594 | 0.434 | 2e-85 | |
| 194772031 | 557 | GF18993 [Drosophila ananassae] gi|190614 | 0.579 | 0.447 | 0.550 | 9e-83 | |
| 340375979 | 521 | PREDICTED: serine palmitoyltransferase 2 | 0.739 | 0.610 | 0.412 | 2e-73 | |
| 432940870 | 564 | PREDICTED: serine palmitoyltransferase 2 | 0.730 | 0.556 | 0.412 | 6e-70 | |
| 405963941 | 560 | Serine palmitoyltransferase 2 [Crassostr | 0.772 | 0.592 | 0.368 | 2e-68 | |
| 405962040 | 660 | Serine palmitoyltransferase 2 [Crassostr | 0.758 | 0.493 | 0.378 | 2e-68 | |
| 395507851 | 552 | PREDICTED: serine palmitoyltransferase 3 | 0.779 | 0.606 | 0.387 | 3e-67 | |
| 126303698 | 552 | PREDICTED: serine palmitoyltransferase 3 | 0.753 | 0.586 | 0.396 | 4e-67 | |
| 358331852 | 555 | serine palmitoyltransferase [Clonorchis | 0.753 | 0.583 | 0.389 | 7e-67 |
| >gi|157108517|ref|XP_001650263.1| serine palmitoyltransferase [Aedes aegypti] gi|108884023|gb|EAT48248.1| AAEL000706-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 328 bits (840), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 171/389 (43%), Positives = 230/389 (59%), Gaps = 61/389 (15%)
Query: 38 GYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTC 97
GY LY+ F FY RYVYRR+ DC+NRP+ SVPG+ +T+KDR T DYGW+F++TGTE+ C
Sbjct: 109 GYVPLYDAFEKFYLRYVYRRVKDCWNRPICSVPGSEVTLKDRITKDYGWSFEFTGTETRC 168
Query: 98 LNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASMLSKGASKSNILFQAHTN 157
LNL SYNYLGF +N G C + ++ES+K G A CS EI G + ++ + T
Sbjct: 169 LNLGSYNYLGFAQNEGPCADEAEESIKAYGLAACSSRREI------GTNPLHVELEQLTA 222
Query: 158 GFANGISKSNGLLSSNGGYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRE 217
F E ++F + + N P PG ++ ++
Sbjct: 223 RFLG------------------VEDAIVFGMGFA----TNSLNIPTLISPGCLVVSDEKN 260
Query: 218 TPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSAPSSLE 277
+ +G + N S LE
Sbjct: 261 HASIILGLRLSGAVTKVFNHNSMK---------------------------------DLE 287
Query: 278 AGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSI 337
LQ+++ GQP +GKPW+KILI+VEG+FSM+GSIV+LPEIV LK KYKAY+Y+DEAHSI
Sbjct: 288 RVLQESIAAGQPKTGKPWKKILIIVEGVFSMEGSIVKLPEIVALKKKYKAYIYLDEAHSI 347
Query: 338 GALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYAT 397
GA GP+GRGV +++G+DP ++DILMGT+TKSFGS GGY+AGSK I+++R NSH YA+
Sbjct: 348 GATGPSGRGVLDFYGVDPNDIDILMGTFTKSFGSAGGYIAGSKKLINFLRVNSHAHCYAS 407
Query: 398 SMPPPVAMQILTSMRIIMGLENGDEGNVR 426
SM PPV QILTSM+IIMGL+ +EG+ R
Sbjct: 408 SMSPPVTQQILTSMKIIMGLDGTNEGSKR 436
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170037084|ref|XP_001846390.1| serine palmitoyltransferase [Culex quinquefasciatus] gi|167880097|gb|EDS43480.1| serine palmitoyltransferase [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 169/389 (43%), Positives = 226/389 (58%), Gaps = 61/389 (15%)
Query: 38 GYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTC 97
GY LY+ F FY RYVYRR+ DC+NRP+ SVPGA +T+K+R T DYGW+F++TGTE+ C
Sbjct: 112 GYVPLYDAFEKFYLRYVYRRVKDCWNRPICSVPGAEVTLKERITKDYGWSFEFTGTETRC 171
Query: 98 LNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASMLSKGASKSNILFQAHTN 157
LNL SYNYLGF +N G C ++ES+K G A CS EI G + ++ + T
Sbjct: 172 LNLGSYNYLGFAQNEGPCAREAEESIKSYGLAACSSRREI------GTNPLHLELEQLTA 225
Query: 158 GFANGISKSNGLLSSNGGYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRE 217
F E ++F + + N P PG ++ ++
Sbjct: 226 RFLG------------------VEDAIVFGMGFA----TNSLNIPTLISPGCLVVSDEKN 263
Query: 218 TPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSAPSSLE 277
+ +G + N S LE
Sbjct: 264 HASIILGLRLSGAVTKVFNHNSMK---------------------------------DLE 290
Query: 278 AGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSI 337
L+ ++ GQP +GKPW+KILI+VEG+FSM+GSIV+LPEIV LK KYKAY+Y+DEAHSI
Sbjct: 291 RVLRDSIASGQPKTGKPWKKILIIVEGVFSMEGSIVKLPEIVALKKKYKAYIYLDEAHSI 350
Query: 338 GALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYAT 397
GA GP+GRGV + +G+DP+++DILMGT+TKSFGS GGY+AGSK I+++R NSH YA+
Sbjct: 351 GATGPSGRGVLDLYGVDPKDIDILMGTFTKSFGSAGGYIAGSKKLINFLRVNSHAHCYAS 410
Query: 398 SMPPPVAMQILTSMRIIMGLENGDEGNVR 426
SM PPV QI+TSM+IIMGL+ EG R
Sbjct: 411 SMSPPVTQQIITSMKIIMGLDGTKEGRNR 439
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194772031|ref|XP_001967733.1| GF18993 [Drosophila ananassae] gi|190614419|gb|EDV29943.1| GF18993 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 153/278 (55%), Positives = 187/278 (67%), Gaps = 29/278 (10%)
Query: 175 GYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTC 234
GY LY+ F FYSRYVYRR+ DC+NRP+ SVPG +T+KDR T DYGW+FK+TGTE+ C
Sbjct: 164 GYVALYDAFESFYSRYVYRRVKDCWNRPICSVPGDELTLKDRVTDDYGWSFKFTGTETRC 223
Query: 235 LNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSAP--------------------- 273
LNL SYNYLGF G C + S+E + G A CS
Sbjct: 224 LNLGSYNYLGFAAAAGRCADESEERARNDGLAYCSSRCELGDNEQLHELESLTARYFGVE 283
Query: 274 -------SSLEAGLQKALLEGQPHSG-KPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKY 325
LE L++ + G P G PW KI++VVEGIFSM+GSIVRLPEI+ LK KY
Sbjct: 284 DAIHNNMRDLERVLREGICYGNPKKGGTPWNKIMVVVEGIFSMEGSIVRLPEIIALKKKY 343
Query: 326 KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDY 385
KAYLY+DEAHS+GA+G GRGVT+YF ++P+EVDILMGT+TKSFGS GGY+AGSK ID+
Sbjct: 344 KAYLYLDEAHSVGAMGSHGRGVTDYFNVNPKEVDILMGTFTKSFGSAGGYLAGSKKLIDF 403
Query: 386 IRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEG 423
+R NSH YA S+ PP+A QILTSM+ IMG + D G
Sbjct: 404 LRTNSHAHCYAGSISPPIAQQILTSMKTIMGEDGSDTG 441
|
Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340375979|ref|XP_003386511.1| PREDICTED: serine palmitoyltransferase 2-like [Amphimedon queenslandica] | Back alignment and taxonomy information |
|---|
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 159/385 (41%), Positives = 220/385 (57%), Gaps = 67/385 (17%)
Query: 49 FYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGF 108
FY+R VYRR+ DCFNRPV VPGA I + DR++ D+ WTFK GT++ CLNL SYNYLGF
Sbjct: 96 FYTRNVYRRMRDCFNRPVCGVPGAYIDLVDRKSDDFNWTFKNVGTKTRCLNLGSYNYLGF 155
Query: 109 GENTGLCTERSKESVKQSGCALCSPSGEIASMLSKGASKSNILFQAHTNGFANGISKSNG 168
E G C + + +S+ + G S ++ ++ + + A A I G
Sbjct: 156 AEEKGPCADAAIQSIHEYGAGTNSSRVDLGTLQCIQDLEEKV---AEFVRKAAAIVFGMG 212
Query: 169 LLSSNGGYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAII---TIKDRETPDYGWTF 225
+++ P L EK L S D N + V GA + TI+ F
Sbjct: 213 FSTNSTNIPALVEKGCLILS--------DALNH-ASVVTGAKLSGATIR---------VF 254
Query: 226 KYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSAPSSLEAGLQKALL 285
K+ ES LE L++A++
Sbjct: 255 KHNDIES-------------------------------------------LEYLLREAIV 271
Query: 286 EGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGR 345
+GQP + +PW+KILI+VEGI+SM+GS+ RL EI+ LK KYKAYLY+DEAHSIGA+GPTGR
Sbjct: 272 KGQPRTHRPWKKILIIVEGIYSMEGSVPRLHEIIELKKKYKAYLYLDEAHSIGAMGPTGR 331
Query: 346 GVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAM 405
GVTEY G+DP +VDI+MGT+TKSFG GGY+A ++ I+++R++SH YA++M PVA+
Sbjct: 332 GVTEYLGVDPADVDIMMGTFTKSFGGCGGYIAATEDIINHLRSHSHAAIYASAMSAPVAL 391
Query: 406 QILTSMRIIMGLENGDEGNVRHSSI 430
QILTSM+IIMG + +EG R + +
Sbjct: 392 QILTSMKIIMGEDGTNEGQKRVTQL 416
|
Source: Amphimedon queenslandica Species: Amphimedon queenslandica Genus: Amphimedon Family: Niphatidae Order: Haplosclerida Class: Demospongiae Phylum: Porifera Superkingdom: Eukaryota |
| >gi|432940870|ref|XP_004082748.1| PREDICTED: serine palmitoyltransferase 2-like [Oryzias latipes] | Back alignment and taxonomy information |
|---|
Score = 271 bits (692), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 155/376 (41%), Positives = 210/376 (55%), Gaps = 62/376 (16%)
Query: 42 LYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTG-TESTCLNL 100
LY F FY+R +Y RI D +NRP+ SVPGA + + DR + DY WTF+Y G T +NL
Sbjct: 115 LYRDFQNFYTRNLYMRIRDNWNRPICSVPGAKMDLMDRTSHDYNWTFEYNGRTMKDVINL 174
Query: 101 ASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASMLSKGASKSNILFQAHTNGFA 160
SYNYLGF ENTG C + + + V+ G + S EI ++ + + A G
Sbjct: 175 GSYNYLGFAENTGPCADSAAQVVRTYGIGVASTRQEIGNLDKHEEMEKQV---AKFLGVE 231
Query: 161 NGISKSNGLLSSNGGYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPD 220
+ ++ G +++ P L K L S D N + V GA ++
Sbjct: 232 SAMAFGMGFATNSMNIPALVGKGCLILS--------DELNH-TSLVLGARLS-------- 274
Query: 221 YGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSAPSSLEAGL 280
G T + F N C E+ L
Sbjct: 275 -GATIRV-----------------FKHNNMQCLEKL-----------------------L 293
Query: 281 QKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGAL 340
+A++ GQP + +PW+KILIVVEGI+SM+GSIVRLPE++ LK +YKAYLY+DEAHSIGAL
Sbjct: 294 SEAIIYGQPRTHRPWKKILIVVEGIYSMEGSIVRLPEVITLKKRYKAYLYLDEAHSIGAL 353
Query: 341 GPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMP 400
G GRGV +YF +DPR+VD+LMGT+TKSFG+ GGY+AG + I+Y+R++SH YA SM
Sbjct: 354 GHRGRGVVDYFDLDPRDVDVLMGTFTKSFGAAGGYIAGKRELIEYLRSHSHSAVYAASMS 413
Query: 401 PPVAMQILTSMRIIMG 416
PPV QI+TSM+ IMG
Sbjct: 414 PPVVEQIITSMKCIMG 429
|
Source: Oryzias latipes Species: Oryzias latipes Genus: Oryzias Family: Adrianichthyidae Order: Beloniformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|405963941|gb|EKC29472.1| Serine palmitoyltransferase 2 [Crassostrea gigas] | Back alignment and taxonomy information |
|---|
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 145/393 (36%), Positives = 222/393 (56%), Gaps = 61/393 (15%)
Query: 38 GYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTC 97
G+ L++ + FY+R +YRR+ DC+NRP+ SV GA + I +R + D+GW F+ TG +
Sbjct: 102 GFVPLFQSWESFYTRNLYRRVRDCWNRPIGSVAGAEMDILERVSYDHGWNFELTGKKQRV 161
Query: 98 LNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASMLSKGASKSNILFQAHTN 157
LNL SYNYLGF +N G C + ++ V + G C+ E+ + ++ + A
Sbjct: 162 LNLGSYNYLGFSQNEGPCADAVEDIVNKYGVGTCASRQEMGYL---DLHRNLDILVAEYL 218
Query: 158 GFANGISKSNGLLSSNGGYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRE 217
G + I+ G +++ P L K L S D N A + + R
Sbjct: 219 GVEDAITVPMGFATNSMNMPLLVGKGCLILS--------DELNH-------ASLILGSRL 263
Query: 218 TPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSAPSSLE 277
+ TFK+ E LE
Sbjct: 264 SGASIRTFKHNDMED-------------------------------------------LE 280
Query: 278 AGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSI 337
L+ A+ EG P + +PW+KILIVVEGI+SM+GSIVRLP+I++LK KYKAY+Y+DEAHSI
Sbjct: 281 EKLRFAVAEGMPRTHRPWKKILIVVEGIYSMEGSIVRLPDIIQLKKKYKAYIYLDEAHSI 340
Query: 338 GALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYAT 397
GALGP G+GV +YFG++P+++D++MGT+TKSFG++GGY+ GSK+ ++++R +SH Y+
Sbjct: 341 GALGPHGKGVVDYFGLNPKDIDVMMGTFTKSFGAVGGYLGGSKNLVNHLRVSSHSAIYSG 400
Query: 398 SMPPPVAMQILTSMRIIMGLENGDEGNVRHSSI 430
SMPP V Q+++SM+I++G + +EG R ++
Sbjct: 401 SMPPCVIQQVISSMKIMLGKDGTNEGKQRIDTL 433
|
Source: Crassostrea gigas Species: Crassostrea gigas Genus: Crassostrea Family: Ostreidae Order: Ostreoida Class: Bivalvia Phylum: Mollusca Superkingdom: Eukaryota |
| >gi|405962040|gb|EKC27754.1| Serine palmitoyltransferase 2 [Crassostrea gigas] | Back alignment and taxonomy information |
|---|
Score = 266 bits (679), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 148/391 (37%), Positives = 218/391 (55%), Gaps = 65/391 (16%)
Query: 38 GYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTC 97
G+ LY+ + FY Y++RR D R + SVPGA + + DR T D+ WTF+YTGT +
Sbjct: 164 GFVTLYQTWESFYHWYIFRRGKDTLYRAINSVPGAEMDVMDRVTDDHYWTFRYTGTSTRV 223
Query: 98 LNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASMLSKGASKSNILFQAHTN 157
+N SYNYLGF +NTG C E ++SV + G A+C+ E+ + K A
Sbjct: 224 INFGSYNYLGFSQNTGPCAEAVEKSVNELGNAICASRQELGYL---QIHKELDDLVADYL 280
Query: 158 GFANGISKSNGLLSSNGGYPDLYEKFVLFYSRYVYRR--IVDCFNRPVTSVPGAIITIKD 215
G I+ G +++ P L EK L S + I+ C + GA I
Sbjct: 281 GVEAAITVPMGFATNSMNLPALVEKGCLILSDELNHASLILGC------RLSGAQIK--- 331
Query: 216 RETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSAPSS 275
TFK+ C E +E +K+
Sbjct: 332 --------TFKHN-----------------------CMEDLEEKLKE------------- 347
Query: 276 LEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAH 335
A+++ QP + + W+KILIVVEGI+SM+GSIV+LP+++RLK KYKAY+Y+DEAH
Sbjct: 348 -------AIIDKQPRTHRKWKKILIVVEGIYSMEGSIVKLPDVIRLKKKYKAYVYLDEAH 400
Query: 336 SIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSY 395
SIGA+GP G+GV +YFG+DP+++DI+MGT+TKSFG++GGY+ GSK I+++R SH Y
Sbjct: 401 SIGAIGPHGKGVVDYFGMDPKDIDIMMGTFTKSFGAVGGYIGGSKRLINHLRLRSHSAIY 460
Query: 396 ATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426
+++M P + Q+++SM II+G +N +G R
Sbjct: 461 SSTMAPSIVQQVISSMNIILGRDNSRDGIKR 491
|
Source: Crassostrea gigas Species: Crassostrea gigas Genus: Crassostrea Family: Ostreidae Order: Ostreoida Class: Bivalvia Phylum: Mollusca Superkingdom: Eukaryota |
| >gi|395507851|ref|XP_003758232.1| PREDICTED: serine palmitoyltransferase 3 [Sarcophilus harrisii] | Back alignment and taxonomy information |
|---|
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 154/397 (38%), Positives = 214/397 (53%), Gaps = 62/397 (15%)
Query: 31 VSRMVKFGYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKY 90
V R + + LY+ F F++R +Y RI D +NRP+ SVPG + +R T DY WTF++
Sbjct: 95 VERKEQKNFVPLYQDFENFFTRNLYMRIRDNWNRPICSVPGPTFDMMERVTDDYNWTFRF 154
Query: 91 TG-TESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASMLSKGASKSN 149
TG +N+ SYNYLGF EN+ + S+K+ G +CS E+ + + K N
Sbjct: 155 TGKIIQDVINMGSYNYLGFAENSHESLTTVRNSLKKYGVGVCSSRQEMGN-IDKHEELEN 213
Query: 150 ILFQAHTNGFANGISKSNGLLSSNGGYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGA 209
++ A G + G +++ P L K L S D N A
Sbjct: 214 LV--AQFLGVEAAMVFGMGFATNSMNIPALVGKGCLILS--------DELNH-------A 256
Query: 210 IITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCS 269
I + R + WT+K+ +S
Sbjct: 257 SIVLGARLSRATIWTYKHNNMQS------------------------------------- 279
Query: 270 PSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYL 329
LE L++A++ GQP S + W+KILI+VEGI+SM+GSIVRLPEIV LK KYKAYL
Sbjct: 280 ------LEKLLREAVIYGQPRSRRAWKKILILVEGIYSMEGSIVRLPEIVALKKKYKAYL 333
Query: 330 YVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRAN 389
Y+DEAHSIG+LG G+GV +YFG+DP +VD+ MGT+TKSFG+ GGY+AG K +DY+R +
Sbjct: 334 YLDEAHSIGSLGSRGQGVVDYFGMDPNDVDVFMGTFTKSFGAAGGYIAGRKDLVDYLRVH 393
Query: 390 SHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426
SH YATSM P+A QI+ SM+ +MGL+ G R
Sbjct: 394 SHSAVYATSMSLPIAEQIIRSMKSLMGLDGTTNGIQR 430
|
Source: Sarcophilus harrisii Species: Sarcophilus harrisii Genus: Sarcophilus Family: Dasyuridae Order: Dasyuromorphia Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|126303698|ref|XP_001374370.1| PREDICTED: serine palmitoyltransferase 3 [Monodelphis domestica] | Back alignment and taxonomy information |
|---|
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 153/386 (39%), Positives = 213/386 (55%), Gaps = 62/386 (16%)
Query: 42 LYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTG-TESTCLNL 100
LY+ F F++R +Y RI D +N+P+ SVPG + +R + DY WTF++TG S +N+
Sbjct: 106 LYQDFENFFTRNLYMRIRDNWNQPICSVPGPTFDVMERVSDDYNWTFRFTGKIISDVINM 165
Query: 101 ASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASMLSKGASKSNILFQAHTNGFA 160
SYNYLGF E + + +K+ G +CS E+ + + K ++ A G
Sbjct: 166 GSYNYLGFAEKSHESLITIRNVIKKYGVGICSSRQEMGN-VDKHEELEGLV--AQFLGVE 222
Query: 161 NGISKSNGLLSSNGGYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPD 220
+ G +++ P L K L S D N + V GA ++ R T
Sbjct: 223 AAMVFGMGFATNSMNIPALVGKGCLILS--------DELNH-TSIVLGARLS---RATI- 269
Query: 221 YGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSAPSSLEAGL 280
WTFK+ +S LE L
Sbjct: 270 --WTFKHNNMQS-------------------------------------------LEKLL 284
Query: 281 QKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGAL 340
++A++ GQP S + W+KILI+VEGI+SM+GSIVRLPEI+ LK KYKAYLYVDEAHSIG++
Sbjct: 285 REAVIYGQPRSRRAWKKILILVEGIYSMEGSIVRLPEIIALKKKYKAYLYVDEAHSIGSV 344
Query: 341 GPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMP 400
GP GRGV +YFG+DP +VD+LMGT+ KSFG+ GGY+AG K +DY+R +SH YATSM
Sbjct: 345 GPRGRGVMDYFGLDPCDVDVLMGTFAKSFGAAGGYIAGKKDLVDYLRVHSHSAVYATSMS 404
Query: 401 PPVAMQILTSMRIIMGLENGDEGNVR 426
PP+A Q++ SM+ IMGL+ G R
Sbjct: 405 PPIAEQVIRSMKTIMGLDGTTNGTQR 430
|
Source: Monodelphis domestica Species: Monodelphis domestica Genus: Monodelphis Family: Didelphidae Order: Didelphimorphia Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|358331852|dbj|GAA50601.1| serine palmitoyltransferase [Clonorchis sinensis] | Back alignment and taxonomy information |
|---|
Score = 261 bits (666), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 150/385 (38%), Positives = 210/385 (54%), Gaps = 61/385 (15%)
Query: 42 LYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLA 101
LY + FY+R +YRR+ DC+NRP+ S PG + + DR++ D GWT ++TG LNL
Sbjct: 69 LYSSYEAFYTRNLYRRVQDCWNRPICSSPGVQMVVMDRKSSDNGWTLEFTGARKRVLNLG 128
Query: 102 SYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASMLSKGASKSNILFQAHTNGFAN 161
SYNYLGFG+ TG E ++ + ++ G + S E S++ ++ + A G
Sbjct: 129 SYNYLGFGDPTGPSIEANEATTRRYGVGVASARQETGSLILHRQLETLV---AEFVGQEA 185
Query: 162 GISKSNGLLSSNGGYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDY 221
I S G +++ P L +K DC + D
Sbjct: 186 AIVFSMGFATNSLNIPCLVDK--------------DC------------CVVSDE----- 214
Query: 222 GWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSAPSSLEAGLQ 281
+T C L+ + F N + ER E
Sbjct: 215 ---LNHTSLVLGC-RLSGASIRRFKHNDMVDLERVLE----------------------- 247
Query: 282 KALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALG 341
+ ++ G+P + +P++KILIVVEGI+SM+GSIV LPE++ LK KYKAYLYVDEAHSIGALG
Sbjct: 248 ETVVYGRPRTHRPYKKILIVVEGIYSMEGSIVHLPEVIALKKKYKAYLYVDEAHSIGALG 307
Query: 342 PTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPP 401
PTGRGV +YFG+DP+E+D+ MGT+TKSFGS GGY+AGS+ IDY+R SH Y SM
Sbjct: 308 PTGRGVADYFGVDPKEIDVSMGTFTKSFGSSGGYLAGSRRLIDYLRCCSHSAVYGGSMSA 367
Query: 402 PVAMQILTSMRIIMGLENGDEGNVR 426
PV Q++T++R++MG E EG R
Sbjct: 368 PVTQQVITTLRVLMGREVPGEGRHR 392
|
Source: Clonorchis sinensis Species: Clonorchis sinensis Genus: Clonorchis Family: Opisthorchiidae Order: Opisthorchiida Class: Trematoda Phylum: Platyhelminthes Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 430 | ||||||
| FB|FBgn0002524 | 597 | lace "lace" [Drosophila melano | 0.344 | 0.247 | 0.637 | 2e-85 | |
| UNIPROTKB|H0YJV2 | 407 | SPTLC2 "Serine palmitoyltransf | 0.348 | 0.368 | 0.646 | 9.6e-76 | |
| MGI|MGI:108074 | 560 | Sptlc2 "serine palmitoyltransf | 0.346 | 0.266 | 0.637 | 2.5e-75 | |
| UNIPROTKB|O15270 | 562 | SPTLC2 "Serine palmitoyltransf | 0.346 | 0.265 | 0.644 | 4.1e-75 | |
| RGD|1305447 | 560 | Sptlc2 "serine palmitoyltransf | 0.346 | 0.266 | 0.637 | 4.1e-75 | |
| UNIPROTKB|F1LSV4 | 521 | Sptlc2 "Protein Sptlc2" [Rattu | 0.346 | 0.285 | 0.637 | 4.1e-75 | |
| UNIPROTKB|A5PKM3 | 562 | SPTLC2 "SPTLC2 protein" [Bos t | 0.330 | 0.252 | 0.661 | 1.8e-74 | |
| UNIPROTKB|E2RSR1 | 562 | SPTLC2 "Uncharacterized protei | 0.330 | 0.252 | 0.647 | 2e-73 | |
| ZFIN|ZDB-GENE-080305-8 | 558 | sptlc2b "serine palmitoyltrans | 0.337 | 0.259 | 0.671 | 3.2e-73 | |
| UNIPROTKB|F1NNL5 | 560 | SPTLC2 "Uncharacterized protei | 0.337 | 0.258 | 0.650 | 8.6e-73 |
| FB|FBgn0002524 lace "lace" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 515 (186.3 bits), Expect = 2.0e-85, Sum P(3) = 2.0e-85
Identities = 95/149 (63%), Positives = 119/149 (79%)
Query: 276 LEAGLQKALLEGQPHSG-KPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEA 334
LE L++ + G P G +PW K++I+VEGIFSM+GSIVRLPE++ LK KYKAYLY+DEA
Sbjct: 333 LERVLRQGVCYGNPKKGGQPWDKVMILVEGIFSMEGSIVRLPEVIALKKKYKAYLYLDEA 392
Query: 335 HSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRS 394
HS+GA+G GRGVT+YF +DP+EVDILMGT+TKSFGS GGY+AGSK ID++R NSH
Sbjct: 393 HSVGAMGSRGRGVTDYFNVDPKEVDILMGTFTKSFGSAGGYLAGSKKLIDFLRTNSHAHC 452
Query: 395 YATSMPPPVAMQILTSMRIIMGLENGDEG 423
YA S+ PP+A QILTSM+ IMG + D G
Sbjct: 453 YAASISPPIAQQILTSMKTIMGEDGTDIG 481
|
|
| UNIPROTKB|H0YJV2 SPTLC2 "Serine palmitoyltransferase 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 534 (193.0 bits), Expect = 9.6e-76, Sum P(2) = 9.6e-76
Identities = 97/150 (64%), Positives = 122/150 (81%)
Query: 275 SLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEA 334
SLE L+ A++ GQP + +PW+KILI+VEGI+SM+GSIVRLPE++ LK KYKAYLY+DEA
Sbjct: 224 SLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEA 283
Query: 335 HSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRS 394
HSIGALGPTGRGV EYFG+DP +VD++MGT+TKSFG+ GGY+ G K IDY+R +SH
Sbjct: 284 HSIGALGPTGRGVVEYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSAV 343
Query: 395 YATSMPPPVAMQILTSMRIIMGLENGDEGN 424
YATS+ PPV QI+TSM+ IMG + GN
Sbjct: 344 YATSLSPPVVEQIITSMKCIMGQDGTSLGN 373
|
|
| MGI|MGI:108074 Sptlc2 "serine palmitoyltransferase, long chain base subunit 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 523 (189.2 bits), Expect = 2.5e-75, Sum P(2) = 2.5e-75
Identities = 95/149 (63%), Positives = 121/149 (81%)
Query: 275 SLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEA 334
SLE L+ A++ GQP + +PW+KILI+VEGI+SM+GSIVRLPE++ LK KYKAYLY+DEA
Sbjct: 285 SLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEA 344
Query: 335 HSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRS 394
HSIGALGP+GRGV +YFG+DP +VD++MGT+TKSFG+ GGY+ G K IDY+R +SH
Sbjct: 345 HSIGALGPSGRGVVDYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSAV 404
Query: 395 YATSMPPPVAMQILTSMRIIMGLENGDEG 423
YATSM PPV QI+TSM+ IMG + G
Sbjct: 405 YATSMSPPVMEQIITSMKCIMGQDGTSLG 433
|
|
| UNIPROTKB|O15270 SPTLC2 "Serine palmitoyltransferase 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 528 (190.9 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 96/149 (64%), Positives = 121/149 (81%)
Query: 275 SLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEA 334
SLE L+ A++ GQP + +PW+KILI+VEGI+SM+GSIVRLPE++ LK KYKAYLY+DEA
Sbjct: 287 SLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEA 346
Query: 335 HSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRS 394
HSIGALGPTGRGV EYFG+DP +VD++MGT+TKSFG+ GGY+ G K IDY+R +SH
Sbjct: 347 HSIGALGPTGRGVVEYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSAV 406
Query: 395 YATSMPPPVAMQILTSMRIIMGLENGDEG 423
YATS+ PPV QI+TSM+ IMG + G
Sbjct: 407 YATSLSPPVVEQIITSMKCIMGQDGTSLG 435
|
|
| RGD|1305447 Sptlc2 "serine palmitoyltransferase, long chain base subunit 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 523 (189.2 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 95/149 (63%), Positives = 121/149 (81%)
Query: 275 SLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEA 334
SLE L+ A++ GQP + +PW+KILI+VEGI+SM+GSIVRLPE++ LK KYKAYLY+DEA
Sbjct: 285 SLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEA 344
Query: 335 HSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRS 394
HSIGALGP+GRGV +YFG+DP +VD++MGT+TKSFG+ GGY+ G K IDY+R +SH
Sbjct: 345 HSIGALGPSGRGVVDYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSAV 404
Query: 395 YATSMPPPVAMQILTSMRIIMGLENGDEG 423
YATSM PPV QI+TSM+ IMG + G
Sbjct: 405 YATSMSPPVMEQIITSMKCIMGQDGTSLG 433
|
|
| UNIPROTKB|F1LSV4 Sptlc2 "Protein Sptlc2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 523 (189.2 bits), Expect = 4.1e-75, Sum P(2) = 4.1e-75
Identities = 95/149 (63%), Positives = 121/149 (81%)
Query: 275 SLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEA 334
SLE L+ A++ GQP + +PW+KILI+VEGI+SM+GSIVRLPE++ LK KYKAYLY+DEA
Sbjct: 285 SLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEA 344
Query: 335 HSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRS 394
HSIGALGP+GRGV +YFG+DP +VD++MGT+TKSFG+ GGY+ G K IDY+R +SH
Sbjct: 345 HSIGALGPSGRGVVDYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSAV 404
Query: 395 YATSMPPPVAMQILTSMRIIMGLENGDEG 423
YATSM PPV QI+TSM+ IMG + G
Sbjct: 405 YATSMSPPVMEQIITSMKCIMGQDGTSLG 433
|
|
| UNIPROTKB|A5PKM3 SPTLC2 "SPTLC2 protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 522 (188.8 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
Identities = 94/142 (66%), Positives = 120/142 (84%)
Query: 275 SLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEA 334
SLE L+ A++ GQP + +PW+KILI+VEGI+SM+GSIVRLPE++ LK KYKAYLY+DEA
Sbjct: 287 SLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEA 346
Query: 335 HSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRS 394
HSIGALGPTGRGV +YFG+DP +VDI+MGT+TKSFG+ GGY+ G K+ IDY+R +SH
Sbjct: 347 HSIGALGPTGRGVVDYFGLDPEDVDIMMGTFTKSFGASGGYIGGKKALIDYLRTHSHSAV 406
Query: 395 YATSMPPPVAMQILTSMRIIMG 416
YA S+ PPVA QI+T+M+ IMG
Sbjct: 407 YAASLSPPVAEQIITAMKCIMG 428
|
|
| UNIPROTKB|E2RSR1 SPTLC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 511 (184.9 bits), Expect = 2.0e-73, Sum P(2) = 2.0e-73
Identities = 92/142 (64%), Positives = 118/142 (83%)
Query: 275 SLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEA 334
SLE L+ A++ GQP + +PW+KILI+VEGI+SM+GSIVRLPE++ LK KYKAYLY+DEA
Sbjct: 287 SLEKLLKDAIVYGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKAYLYLDEA 346
Query: 335 HSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRS 394
HSIGALGP+GRGV +YFG+DP +VD++MGT+TKSFG+ GGY+ G K IDY+R +SH
Sbjct: 347 HSIGALGPSGRGVVDYFGLDPEDVDVMMGTFTKSFGASGGYIGGKKELIDYLRTHSHSAV 406
Query: 395 YATSMPPPVAMQILTSMRIIMG 416
YATS+ PV QI+TSM+ IMG
Sbjct: 407 YATSLSAPVVEQIVTSMKCIMG 428
|
|
| ZFIN|ZDB-GENE-080305-8 sptlc2b "serine palmitoyltransferase, long chain base subunit 2b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 524 (189.5 bits), Expect = 3.2e-73, Sum P(2) = 3.2e-73
Identities = 98/146 (67%), Positives = 120/146 (82%)
Query: 275 SLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEA 334
SLE L+ A++ GQP + +PW+KILIVVEGI+SM+GSIVRLPEI+ LK KYKAYLY+DEA
Sbjct: 286 SLEKMLRDAIVHGQPRTHRPWKKILIVVEGIYSMEGSIVRLPEIIALKKKYKAYLYLDEA 345
Query: 335 HSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRS 394
HSIGALG GRGV +YFG+DP +VDI+MGT+TKSFG+ GGY+ G K IDY+R +SH
Sbjct: 346 HSIGALGTRGRGVVDYFGLDPSDVDIMMGTFTKSFGAAGGYIGGKKELIDYLRLHSHSAV 405
Query: 395 YATSMPPPVAMQILTSMRIIMGLENG 420
YATSM PPV QI+TSM+ IMG E+G
Sbjct: 406 YATSMSPPVTQQIITSMKCIMG-EDG 430
|
|
| UNIPROTKB|F1NNL5 SPTLC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 524 (189.5 bits), Expect = 8.6e-73, Sum P(2) = 8.6e-73
Identities = 95/146 (65%), Positives = 122/146 (83%)
Query: 275 SLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEA 334
SLE L+ A++ GQP + +PW+KILI+VEGI+SM+GSIVRLPE++ LK KYK+YLY+DEA
Sbjct: 285 SLEKLLKDAIVHGQPRTRRPWKKILILVEGIYSMEGSIVRLPEVIALKKKYKSYLYLDEA 344
Query: 335 HSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRS 394
HSIGALGPTGRGV EYFG++P +VD++MGT+TKSFG+ GGY+ G K IDY+R +SH
Sbjct: 345 HSIGALGPTGRGVVEYFGLNPEDVDVMMGTFTKSFGAAGGYIGGKKELIDYLRTHSHSAV 404
Query: 395 YATSMPPPVAMQILTSMRIIMGLENG 420
YATS+ PPV QI+TSM+ IMG E+G
Sbjct: 405 YATSLSPPVVEQIITSMKCIMG-EDG 429
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q54EX5 | SPTC2_DICDI | 2, ., 3, ., 1, ., 5, 0 | 0.3695 | 0.7558 | 0.6632 | yes | N/A |
| Q9XVI6 | SPTC3_CAEEL | 2, ., 3, ., 1, ., 5, 0 | 0.3506 | 0.7534 | 0.6328 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.3.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 430 | |||
| PLN02483 | 489 | PLN02483, PLN02483, serine palmitoyltransferase | 1e-69 | |
| cd06454 | 349 | cd06454, KBL_like, KBL_like; this family belongs t | 1e-58 | |
| COG0156 | 388 | COG0156, BioF, 7-keto-8-aminopelargonate synthetas | 1e-53 | |
| PRK05958 | 385 | PRK05958, PRK05958, 8-amino-7-oxononanoate synthas | 2e-42 | |
| TIGR00858 | 360 | TIGR00858, bioF, 8-amino-7-oxononanoate synthase | 7e-41 | |
| PRK06939 | 397 | PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzym | 3e-38 | |
| TIGR01825 | 385 | TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-depe | 8e-34 | |
| PRK09064 | 407 | PRK09064, PRK09064, 5-aminolevulinate synthase; Va | 6e-30 | |
| PRK13392 | 410 | PRK13392, PRK13392, 5-aminolevulinate synthase; Pr | 6e-27 | |
| TIGR01821 | 402 | TIGR01821, 5aminolev_synth, 5-aminolevulinic acid | 3e-26 | |
| PLN02822 | 481 | PLN02822, PLN02822, serine palmitoyltransferase | 5e-26 | |
| TIGR01822 | 393 | TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate co | 1e-25 | |
| PRK13393 | 406 | PRK13393, PRK13393, 5-aminolevulinate synthase; Pr | 3e-25 | |
| PLN02483 | 489 | PLN02483, PLN02483, serine palmitoyltransferase | 2e-21 | |
| PLN02483 | 489 | PLN02483, PLN02483, serine palmitoyltransferase | 2e-21 | |
| PLN03227 | 392 | PLN03227, PLN03227, serine palmitoyltransferase-li | 1e-20 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 4e-16 | |
| PLN02955 | 476 | PLN02955, PLN02955, 8-amino-7-oxononanoate synthas | 3e-14 | |
| PRK07505 | 402 | PRK07505, PRK07505, hypothetical protein; Provisio | 4e-14 | |
| PRK05937 | 370 | PRK05937, PRK05937, 8-amino-7-oxononanoate synthas | 8e-14 | |
| PRK07179 | 407 | PRK07179, PRK07179, hypothetical protein; Provisio | 4e-12 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 8e-06 | |
| cd00609 | 350 | cd00609, AAT_like, Aspartate aminotransferase fami | 2e-05 |
| >gnl|CDD|178101 PLN02483, PLN02483, serine palmitoyltransferase | Back alignment and domain information |
|---|
Score = 227 bits (581), Expect = 1e-69
Identities = 81/151 (53%), Positives = 115/151 (76%)
Query: 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVD 332
PS LE L++ + EGQP + +PW+KI+++VEGI+SM+G + +LPEIV + KYKAY+Y+D
Sbjct: 217 PSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLD 276
Query: 333 EAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHV 392
EAHSIGA+G TGRGV E G+DP +VDI+MGT+TKSFGS GGY+AGSK I Y++
Sbjct: 277 EAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCGGYIAGSKELIQYLKRTCPA 336
Query: 393 RSYATSMPPPVAMQILTSMRIIMGLENGDEG 423
YATSM PP Q+++++++I+G + + G
Sbjct: 337 HLYATSMSPPAVQQVISAIKVILGEDGTNRG 367
|
Length = 489 |
| >gnl|CDD|99747 cd06454, KBL_like, KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Score = 195 bits (497), Expect = 1e-58
Identities = 69/144 (47%), Positives = 94/144 (65%), Gaps = 9/144 (6%)
Query: 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVD 332
LE L++A +P+ K LIV EG++SMDG I LPE+V L KY A L+VD
Sbjct: 117 MEDLEKLLREAR--------RPYGKKLIVTEGVYSMDGDIAPLPELVDLAKKYGAILFVD 168
Query: 333 EAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHV 392
EAHS+G GP GRGV E FG +VDI+MGT K+FG++GGY+AGSK IDY+R+ +
Sbjct: 169 EAHSVGVYGPHGRGV-EEFGGLTDDVDIIMGTLGKAFGAVGGYIAGSKELIDYLRSYARG 227
Query: 393 RSYATSMPPPVAMQILTSMRIIMG 416
++TS+PP VA L ++ ++ G
Sbjct: 228 FIFSTSLPPAVAAAALAALEVLQG 251
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. Length = 349 |
| >gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 1e-53
Identities = 67/134 (50%), Positives = 91/134 (67%), Gaps = 2/134 (1%)
Query: 283 ALLE--GQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGAL 340
LE + R+ LIV EG+FSMDG I LPE+V L KY A LYVDEAH++G L
Sbjct: 156 DHLEALLEEARENGARRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVL 215
Query: 341 GPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMP 400
GP GRG+ E+FG++P EVDI++GT K+ GS GGY+AGS + IDY+R + ++T++P
Sbjct: 216 GPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSGGYIAGSAALIDYLRNRARPFIFSTALP 275
Query: 401 PPVAMQILTSMRII 414
P VA L ++RI+
Sbjct: 276 PAVAAAALAALRIL 289
|
Length = 388 |
| >gnl|CDD|235655 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 2e-42
Identities = 55/144 (38%), Positives = 77/144 (53%), Gaps = 14/144 (9%)
Query: 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVD 332
+LEA L K + LIV E +FSMDG + L E+V L ++ A+L VD
Sbjct: 155 VDALEALLAKW----------RAGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVD 204
Query: 333 EAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYI--RANS 390
EAH G LGP GRG+ G+ IL+GT K+ GS G V GS++ IDY+ RA
Sbjct: 205 EAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSGAAVLGSETLIDYLINRARP 264
Query: 391 HVRSYATSMPPPVAMQILTSMRII 414
+ + T++PP A ++RI+
Sbjct: 265 FI--FTTALPPAQAAAARAALRIL 286
|
Length = 385 |
| >gnl|CDD|129937 TIGR00858, bioF, 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 7e-41
Identities = 62/144 (43%), Positives = 88/144 (61%), Gaps = 13/144 (9%)
Query: 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVD 332
LE L+K E + LIV +G+FSMDG I LP++V L +Y A+L VD
Sbjct: 132 VEHLERLLEKNRGERR---------KLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVD 182
Query: 333 EAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYI--RANS 390
+AH G LG GRG E+FG+ P VDI +GT +K+ GS G YVAGS++ IDY+ RA +
Sbjct: 183 DAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYGAYVAGSQALIDYLINRART 242
Query: 391 HVRSYATSMPPPVAMQILTSMRII 414
+ ++T++PP VA L ++ +I
Sbjct: 243 LI--FSTALPPAVAAAALAALELI 264
|
7-keto-8-aminopelargonic acid synthetase is an alternate name. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 360 |
| >gnl|CDD|235893 PRK06939, PRK06939, 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 3e-38
Identities = 61/150 (40%), Positives = 85/150 (56%), Gaps = 16/150 (10%)
Query: 276 LEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAH 335
LEA L++A G R LI +G+FSMDG I LPEI L +KY A + VD++H
Sbjct: 161 LEAQLKEAKEAGA-------RHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSH 213
Query: 336 SIGALGPTGRGVTEYFGIDPREVDILMGTYTKSF-GSMGGYVAGSKSTIDYIRANSHVRS 394
++G +G GRG E+FG+ R VDI+ GT K+ G+ GGY AG K ID++R S R
Sbjct: 214 AVGFVGENGRGTVEHFGVMDR-VDIITGTLGKALGGASGGYTAGRKEVIDWLRQRS--RP 270
Query: 395 Y--ATSMPPPVAMQILTSMRIIMGLENGDE 422
Y + S+ P + + + + LE DE
Sbjct: 271 YLFSNSLAPAIVAASIKVLEL---LEESDE 297
|
Length = 397 |
| >gnl|CDD|130884 TIGR01825, gly_Cac_T_rel, pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 8e-34
Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 10/143 (6%)
Query: 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVD 332
L+ L++ + K LIV +G+FSMDG + LPEIV L +Y A YVD
Sbjct: 149 MDDLDRVLREN---------PSYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVD 199
Query: 333 EAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHV 392
+AH G +G GRG +FG++ + VDI +GT +K+ G +GGY AG K I+Y++ +
Sbjct: 200 DAHGSGVMGEAGRGTVHHFGLEDK-VDIQVGTLSKAIGVVGGYAAGHKELIEYLKNRARP 258
Query: 393 RSYATSMPPPVAMQILTSMRIIM 415
++T+ PP V + ++ +
Sbjct: 259 FLFSTAQPPAVVAALAAAVDELQ 281
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. Length = 385 |
| >gnl|CDD|236370 PRK09064, PRK09064, 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 6e-30
Identities = 53/122 (43%), Positives = 73/122 (59%), Gaps = 13/122 (10%)
Query: 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREV 358
LI E ++SMDG I + EI L +KY A Y+DE H++G GP G G+ E G+ R +
Sbjct: 181 LIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDR-I 239
Query: 359 DILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYA------TSMPPPVAMQILTSMR 412
DI+ GT K+FG MGGY+AGS + +D + RSYA TS+PP +A L S+R
Sbjct: 240 DIIEGTLAKAFGVMGGYIAGSAALVDAV------RSYAPGFIFTTSLPPAIAAAALASIR 293
Query: 413 II 414
+
Sbjct: 294 HL 295
|
Length = 407 |
| >gnl|CDD|184023 PRK13392, PRK13392, 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 6e-27
Identities = 50/128 (39%), Positives = 74/128 (57%), Gaps = 1/128 (0%)
Query: 285 LEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTG 344
LE Q S P R LI E ++SMDG I + I L ++Y A YVDE H++G G G
Sbjct: 167 LEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARG 226
Query: 345 RGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVA 404
G+ E G+ R +D++ GT K+FG +GGY+A S ID++R+ + + T++PP VA
Sbjct: 227 GGIAERDGLMDR-IDMIQGTLAKAFGCLGGYIAASADLIDFVRSFAPGFIFTTALPPAVA 285
Query: 405 MQILTSMR 412
++R
Sbjct: 286 AGATAAIR 293
|
Length = 410 |
| >gnl|CDD|233587 TIGR01821, 5aminolev_synth, 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 3e-26
Identities = 57/157 (36%), Positives = 84/157 (53%), Gaps = 12/157 (7%)
Query: 258 ESVKQSGCA--LCSPSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRL 315
E ++ SG + + + LE LQ P R +I E ++SMDG I +
Sbjct: 146 EGIRHSGAEKFIFRHNDVAHLEKLLQSV---------DPNRPKIIAFESVYSMDGDIAPI 196
Query: 316 PEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGY 375
EI L +KY A Y+DE H++G GP G G+ E G+ R +DI+ GT K+FG +GGY
Sbjct: 197 EEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHR-IDIIEGTLAKAFGVVGGY 255
Query: 376 VAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412
+A S+ ID IR+ + + TS+PP +A S+R
Sbjct: 256 IAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIR 292
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 402 |
| >gnl|CDD|178417 PLN02822, PLN02822, serine palmitoyltransferase | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 5e-26
Identities = 49/140 (35%), Positives = 79/140 (56%), Gaps = 3/140 (2%)
Query: 275 SLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEA 334
SL L+K L K R IVVE I+ G I L EIVRLK KY+ + +DE+
Sbjct: 227 SLRNTLEK-LTAENKRKKKLRR--YIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDES 283
Query: 335 HSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRS 394
+S G LG +GRG++E+FG+ ++DI+ + + GG+ GS +D+ R +S
Sbjct: 284 NSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEGGFCTGSARVVDHQRLSSSGYV 343
Query: 395 YATSMPPPVAMQILTSMRII 414
++ S+PP +A +T++ ++
Sbjct: 344 FSASLPPYLASAAITAIDVL 363
|
Length = 481 |
| >gnl|CDD|130881 TIGR01822, 2am3keto_CoA, 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 1e-25
Identities = 54/142 (38%), Positives = 76/142 (53%), Gaps = 9/142 (6%)
Query: 276 LEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAH 335
LEA L++A G R LI +G+FSMDG I L EI L +KY A + VDE H
Sbjct: 157 LEAQLKEARAAGA-------RHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECH 209
Query: 336 SIGALGPTGRGVTEYFGIDPREVDILMGTYTKSF-GSMGGYVAGSKSTIDYIRANSHVRS 394
+ G LGPTGRG E G+ R VDI+ GT K+ G+ GG+ K ++ +R S
Sbjct: 210 ATGFLGPTGRGSHELCGVMGR-VDIITGTLGKALGGASGGFTTARKEVVELLRQRSRPYL 268
Query: 395 YATSMPPPVAMQILTSMRIIMG 416
++ S+PP V + + ++
Sbjct: 269 FSNSLPPAVVGASIKVLEMLEA 290
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function [Energy metabolism, Amino acids and amines]. Length = 393 |
| >gnl|CDD|184024 PRK13393, PRK13393, 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 3e-25
Identities = 53/135 (39%), Positives = 78/135 (57%), Gaps = 6/135 (4%)
Query: 278 AGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSI 337
A L++ L + PH K L+ E ++SMDG I + EI + K+ A Y+DE H++
Sbjct: 164 ADLERKLSDLDPHRPK-----LVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAV 218
Query: 338 GALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYAT 397
G GP G G+ E G+ R + I+ GT K+FG MGGY+ GS + D+IR+ + + T
Sbjct: 219 GLYGPRGGGIAEREGLADR-LTIIEGTLAKAFGVMGGYITGSAALCDFIRSFASGFIFTT 277
Query: 398 SMPPPVAMQILTSMR 412
S+PP VA L S+R
Sbjct: 278 SLPPAVAAGALASVR 292
|
Length = 406 |
| >gnl|CDD|178101 PLN02483, PLN02483, serine palmitoyltransferase | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 2e-21
Identities = 41/98 (41%), Positives = 50/98 (51%)
Query: 175 GYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTC 234
GY + FY R +Y RI DCFNRP+ S P A + +R + D T K T C
Sbjct: 43 GYAPICLGLEDFYIRRLYLRIQDCFNRPIASAPDAWFDVVERVSNDNNKTLKRTTKTRRC 102
Query: 235 LNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA 272
LNL SYNYLGF CT R ES+K+ + CS
Sbjct: 103 LNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRV 140
|
Length = 489 |
| >gnl|CDD|178101 PLN02483, PLN02483, serine palmitoyltransferase | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 2e-21
Identities = 41/96 (42%), Positives = 50/96 (52%)
Query: 38 GYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTC 97
GY + FY R +Y RI DCFNRP+ S P A + +R + D T K T C
Sbjct: 43 GYAPICLGLEDFYIRRLYLRIQDCFNRPIASAPDAWFDVVERVSNDNNKTLKRTTKTRRC 102
Query: 98 LNLASYNYLGFGENTGLCTERSKESVKQSGCALCSP 133
LNL SYNYLGF CT R ES+K+ + CS
Sbjct: 103 LNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSS 138
|
Length = 489 |
| >gnl|CDD|178766 PLN03227, PLN03227, serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 92.7 bits (230), Expect = 1e-20
Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 4/123 (3%)
Query: 293 KPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352
++ +VVEG++ G++ L E+V LK ++ L +DE+ S G LG +GRG E+ G
Sbjct: 135 PTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAG 194
Query: 353 IDP-REVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPP---PVAMQIL 408
+ P +I+ + +FGS+GG GS+ +D+ R + ++ S PP
Sbjct: 195 LKPMVHAEIVTFSLENAFGSVGGMTVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATAT 254
Query: 409 TSM 411
Sbjct: 255 AGE 257
|
Length = 392 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 4e-16
Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 10/126 (7%)
Query: 290 HSGKPWRKILIVVEGIFSMDGSIVRLPE---IVRLKNKYKAYLYVDEAHSIGALGPTGRG 346
+++ + G++ L E ++ L ++ L VDEA++ G
Sbjct: 136 LKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHNILLLVDEAYAGFVFGS-LDA 194
Query: 347 VTEYFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMP-PP 402
V + +++G+++K+FG G GY+ G+ + I +R + R + +S
Sbjct: 195 VATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAAVISQLRKLA--RPFYSSTHLQA 252
Query: 403 VAMQIL 408
A L
Sbjct: 253 AAAAAL 258
|
Length = 357 |
| >gnl|CDD|178541 PLN02955, PLN02955, 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Score = 74.3 bits (182), Expect = 3e-14
Identities = 36/116 (31%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDP 355
++ ++V + +FSMDG + E+ +L+ KY L +D+AH G G GV E F +
Sbjct: 249 KRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEA 308
Query: 356 REVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411
+VD+ +GT +K+ G GG++A SK I++ ++T++P P+A ++
Sbjct: 309 -DVDLCVGTLSKAAGCHGGFIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAV 363
|
Length = 476 |
| >gnl|CDD|181006 PRK07505, PRK07505, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-14
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRG-VTEYFGID 354
+ + V +G++SM G I + E++RL+ KY +LY+D+AH + G G G V
Sbjct: 180 KTVAYVADGVYSM-GGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYR 238
Query: 355 PREVDILMGTYTKSFGSMGGYVA-GSKSTIDYIRANSHVRSYATSMPPPVAM--QILTSM 411
E I+ + K+FG+ GG + G I+ I + A S VA IL S
Sbjct: 239 LNERTIIAASLGKAFGASGGVIMLGDAEQIELIL--RYAGPLAFSQSLNVAALGAILASA 296
Query: 412 RI 413
I
Sbjct: 297 EI 298
|
Length = 402 |
| >gnl|CDD|102071 PRK05937, PRK05937, 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 8e-14
Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 13/169 (7%)
Query: 244 GFGENTGLCTERSKES--VKQSGCALCSPSAPSSLEAGLQKAL-------LEG--QPHSG 292
G+ N GLC S + V S S+ +G ++ LE +
Sbjct: 80 GYMANLGLCAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFRHNDLDHLESLLESCRQ 139
Query: 293 KPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352
+ + +I I V ++S G++ L +I+ L KY A+L VDEAH++G G G+G G
Sbjct: 140 RSFGRIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLG 199
Query: 353 IDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPP 401
+ ++ TY+K+ GSMG + S + NS Y+T +PP
Sbjct: 200 YE--NFYAVLVTYSKALGSMGAALLSSSEVKQDLMLNSPPLRYSTGLPP 246
|
Length = 370 |
| >gnl|CDD|180866 PRK07179, PRK07179, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 4e-12
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 300 IVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVD 359
IVV+ ++S G+I L +IV + ++ L VDE+HS+G GP G G+ G+ R V
Sbjct: 185 IVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSR-VH 243
Query: 360 ILMGTYTKSFGSMGGYVAGSKSTIDYIRANS 390
+ + K+F G + + +Y+ S
Sbjct: 244 FITASLAKAFAGRAGIITCPRELAEYVPFVS 274
|
Length = 407 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 8e-06
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREV 358
LIV+ + G +V L EI ++ +Y L VD A + GA +
Sbjct: 95 LIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGA-----SPAPGVLIPEGGA- 148
Query: 359 DILMGTYTKSF-GSMGGYVAG 378
D++ + K+ G GG V
Sbjct: 149 DVVTFSLHKNLGGEGGGVVIV 169
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 12/112 (10%)
Query: 314 RLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373
L E+ L K+ + DEA++ L G +D E I++ +++K+FG G
Sbjct: 153 ELEELAELAKKHGILIISDEAYA--ELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPG 210
Query: 374 ---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDE 422
GY+ + + + Y TS P ++ + L++G+E
Sbjct: 211 LRIGYLIAPPE--ELLERLKKLLPYTTSGPSTLSQAAAAAA-----LDDGEE 255
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| KOG1357|consensus | 519 | 100.0 | ||
| PLN02483 | 489 | serine palmitoyltransferase | 100.0 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 100.0 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 100.0 | |
| KOG1359|consensus | 417 | 100.0 | ||
| KOG1360|consensus | 570 | 100.0 | ||
| KOG1358|consensus | 467 | 100.0 | ||
| PLN02822 | 481 | serine palmitoyltransferase | 99.98 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.97 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.97 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.97 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.97 | |
| KOG1357|consensus | 519 | 99.96 | ||
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.95 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.95 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.94 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.93 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.92 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.92 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.89 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.89 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.89 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.87 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.86 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.83 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.83 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.83 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.82 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.81 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.81 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.81 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.8 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.8 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.79 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.79 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.79 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.79 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.78 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.78 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.78 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.77 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.77 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.77 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.77 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.77 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.77 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.76 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.76 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.76 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.76 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.76 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.75 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.75 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.75 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.74 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.74 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.73 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.73 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.73 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.72 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.71 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.7 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.7 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.7 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.7 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.7 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.7 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.7 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.7 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.69 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.69 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.69 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.68 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.68 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.68 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.68 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.68 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.68 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.67 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.67 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 99.67 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.66 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.66 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.66 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.66 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.65 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.65 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.65 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.65 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.65 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.64 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.64 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.63 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.63 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.62 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.62 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.62 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.62 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.61 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.61 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.6 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.59 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.58 | |
| KOG1402|consensus | 427 | 99.58 | ||
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.55 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.54 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.54 | |
| KOG1404|consensus | 442 | 99.51 | ||
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.48 | |
| KOG1401|consensus | 433 | 99.48 | ||
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.47 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.44 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.43 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.35 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.34 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.33 | |
| KOG0257|consensus | 420 | 99.32 | ||
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.31 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.3 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.28 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.28 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.28 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.26 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.24 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.23 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.23 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.23 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.22 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.22 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.21 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.2 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.2 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.19 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.18 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.17 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.17 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.17 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.17 | |
| KOG1359|consensus | 417 | 99.17 | ||
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.16 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.16 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.14 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.14 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.13 | |
| PRK07324 | 373 | transaminase; Validated | 99.12 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.12 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.12 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.11 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.11 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.11 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.11 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.1 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.1 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.1 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.1 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.1 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.1 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 99.1 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.09 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.09 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.08 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.08 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.08 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.07 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.06 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.06 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.05 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.05 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.05 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.05 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.05 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.05 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.04 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.04 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.04 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.04 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.04 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.04 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.04 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.03 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.03 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.02 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.02 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.02 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.01 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 99.01 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.01 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.01 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.01 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.01 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.01 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.01 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.0 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.0 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.0 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.0 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 98.99 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 98.98 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 98.98 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 98.96 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 98.95 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 98.95 | |
| PLN02187 | 462 | rooty/superroot1 | 98.94 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 98.94 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 98.94 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 98.94 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 98.93 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 98.92 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 98.92 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 98.91 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 98.91 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 98.91 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 98.91 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.9 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 98.9 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 98.89 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.89 | |
| PRK06855 | 433 | aminotransferase; Validated | 98.89 | |
| PLN02721 | 353 | threonine aldolase | 98.88 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 98.88 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 98.88 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 98.88 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 98.88 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 98.88 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 98.87 | |
| PLN02656 | 409 | tyrosine transaminase | 98.87 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 98.86 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 98.86 | |
| PLN02368 | 407 | alanine transaminase | 98.86 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 98.86 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 98.86 | |
| PRK07337 | 388 | aminotransferase; Validated | 98.85 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 98.84 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 98.84 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 98.84 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 98.84 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 98.83 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 98.83 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 98.83 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 98.82 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 98.82 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 98.82 | |
| PLN02651 | 364 | cysteine desulfurase | 98.82 | |
| KOG1403|consensus | 452 | 98.82 | ||
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 98.82 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 98.82 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 98.81 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.81 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 98.81 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 98.81 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 98.8 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 98.8 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 98.8 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 98.79 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 98.78 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 98.78 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 98.78 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 98.78 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 98.77 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 98.77 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 98.77 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 98.77 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 98.76 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 98.76 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 98.76 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 98.76 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.76 | |
| PLN02397 | 423 | aspartate transaminase | 98.75 | |
| KOG0053|consensus | 409 | 98.73 | ||
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 98.73 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 98.73 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 98.73 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 98.73 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 98.72 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 98.72 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 98.72 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 98.71 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 98.71 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 98.71 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 98.71 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 98.7 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 98.68 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.68 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 98.68 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 98.68 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 98.66 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 98.65 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 98.65 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 98.65 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 98.65 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 98.64 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 98.62 | |
| KOG1405|consensus | 484 | 98.62 | ||
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 98.62 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 98.62 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 98.61 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 98.6 | |
| PLN02231 | 534 | alanine transaminase | 98.59 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 98.59 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 98.58 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 98.58 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 98.58 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 98.55 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.54 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.48 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 98.47 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.46 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 98.44 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 98.43 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 98.43 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 98.42 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 98.4 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 98.4 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 98.39 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 98.37 | |
| PLN02822 | 481 | serine palmitoyltransferase | 98.37 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 98.36 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 98.36 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 98.35 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 98.32 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 98.3 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 98.3 | |
| KOG0256|consensus | 471 | 98.28 | ||
| KOG0633|consensus | 375 | 98.28 | ||
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 98.27 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 98.26 | |
| KOG1360|consensus | 570 | 98.22 | ||
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 98.19 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 98.17 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 98.15 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 98.14 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 98.13 | |
| KOG1358|consensus | 467 | 98.11 | ||
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 98.09 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 98.06 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 98.06 | |
| KOG0259|consensus | 447 | 98.05 | ||
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 98.03 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 98.02 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 97.99 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 97.99 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 97.91 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 97.91 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 97.9 | |
| KOG1549|consensus | 428 | 97.88 | ||
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 97.85 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 97.8 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 97.78 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 97.78 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 97.77 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 97.73 | |
| KOG2862|consensus | 385 | 97.68 | ||
| PRK07179 | 407 | hypothetical protein; Provisional | 97.64 | |
| KOG0634|consensus | 472 | 97.61 | ||
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 97.53 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 97.41 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 97.41 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 97.38 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 97.3 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 97.3 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 97.28 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 97.25 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 97.25 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 97.1 | |
| KOG1368|consensus | 384 | 97.07 | ||
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 97.03 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 97.02 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 96.98 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 96.92 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 96.92 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 96.83 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 96.8 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 96.79 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 96.75 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 96.74 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 96.65 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 96.6 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 96.54 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 96.39 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 96.31 | |
| PLN02880 | 490 | tyrosine decarboxylase | 96.17 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 96.13 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 95.93 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 95.66 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 95.34 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 95.13 | |
| PLN02263 | 470 | serine decarboxylase | 94.82 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 94.62 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 94.61 | |
| PLN02452 | 365 | phosphoserine transaminase | 94.52 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 94.46 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 94.4 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 94.32 | |
| KOG0629|consensus | 510 | 94.02 | ||
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 93.71 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 92.13 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 92.07 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 91.82 | |
| KOG2467|consensus | 477 | 91.8 | ||
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 89.66 | |
| KOG1412|consensus | 410 | 89.63 | ||
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 89.2 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 88.84 | |
| KOG0258|consensus | 475 | 86.5 | ||
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 86.23 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 83.85 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 83.83 | |
| KOG1383|consensus | 491 | 83.28 | ||
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 82.14 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 80.68 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 80.49 | |
| KOG3846|consensus | 465 | 80.46 |
| >KOG1357|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-68 Score=535.32 Aligned_cols=320 Identities=50% Similarity=0.860 Sum_probs=270.1
Q ss_pred cccccccCCccchHHHHHHHHHHHHHHhhhcccCCcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCC
Q psy2206 30 EVSRMVKFGYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFG 109 (430)
Q Consensus 30 ~~~~~~~~~~~pl~~~~e~~~~r~l~~r~~d~~~rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa 109 (430)
+..+| +||+||+++||+||+|++|+|++|||+|||+|+||++|++++|+|+|+||||++||+..+||||||||||||+
T Consensus 73 ~~~~~--~g~~ply~~Fe~FY~Rriy~ri~Dc~~RPi~~VPG~~v~l~dR~S~D~n~tfk~tG~~~~~lNlgSYNYLGFa 150 (519)
T KOG1357|consen 73 KDNEM--DGYAPLYSSFESFYSRRIYRRIRDCFERPICSVPGAWVDLMDRVSDDYNWTFKYTGTRSRCLNLGSYNYLGFA 150 (519)
T ss_pred ccccc--cCccchhhhHHHHHHHHHHHHHhHhhcCCCcCCCCceEEeeeeeccCCCceEEeccceeeeeeeccccccccc
Confidence 34445 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHhhhCCccccCCccccccc-ccccceee----------EEeccccccccccccccCCccccCCCCch
Q psy2206 110 ENTGLCTERSKESVKQSGCALCSPSGEIASML-SKGASKSN----------ILFQAHTNGFANGISKSNGLLSSNGGYPD 178 (430)
Q Consensus 110 ~~~~~~~~a~~~al~~yG~gs~~sr~~~g~~l-~~~~~~l~----------~~~~gh~~~~~~~~~~~~~~~~~~~~~~~ 178 (430)
++++.|.+++.+++++||.++|+||.+.|+.- -+++.-|+ +|-.|..++-.
T Consensus 151 ~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g~e~a~vF~mGf~TNs~------------------ 212 (519)
T KOG1357|consen 151 QSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLGVEDAIVFSMGFATNSM------------------ 212 (519)
T ss_pred ccCCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhcCCcceEEEecccccccc------------------
Confidence 99999999999999999999999999999982 11211111 11111111100
Q ss_pred hhHHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHH
Q psy2206 179 LYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKE 258 (430)
Q Consensus 179 l~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ 258 (430)
+.|.--.+|+-|.-++ |..+ .+
T Consensus 213 ---------------------~~p~l~~~gsLIiSDe---------------------------lNHa----Si------ 234 (519)
T KOG1357|consen 213 ---------------------NIPSLLGKGSLIISDE---------------------------LNHA----SL------ 234 (519)
T ss_pred ---------------------CcceeecCCcceeecc---------------------------ccch----he------
Confidence 1122223333332211 1100 00
Q ss_pred HHHHhCCCCCCC--CC-----HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEE
Q psy2206 259 SVKQSGCALCSP--SA-----PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYV 331 (430)
Q Consensus 259 ai~~yG~g~~~s--r~-----~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~Liv 331 (430)
..|+-.++. |. +++||++|++++++|||+||+||++++||+|++|||+|.+++|+++++++++|.++|++
T Consensus 235 ---~~GaRLSgAtiRVfkHNdm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~l 311 (519)
T KOG1357|consen 235 ---ITGARLSGATTRVFRHNDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYL 311 (519)
T ss_pred ---eccccccCceEEEEecCCHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccccEEEEe
Confidence 112221111 11 79999999999999999999999999999999999999999999999999999999999
Q ss_pred eccccccccCCCCCccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 332 DEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 332 DEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||||++|++|++|+|+|+++++++.++||+||||.|+||+.|||++++++++++++..+....+++++||+++++.+.++
T Consensus 312 DEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga~GGyiagsk~lid~lrt~s~~~~yat~~sppvaqq~~ssl 391 (519)
T KOG1357|consen 312 DEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAAGGYIAGSKELIDYLRTPSPSALYATSLSPPVAQQILTSV 391 (519)
T ss_pred eccccccccCCCCcceeeccCCCchhheeecceehhhcccccceecCcHHHHhhhccCCCceeecccCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HHHHccCCchHHHhhhhcC
Q psy2206 412 RIIMGLENGDEGNVRHSSI 430 (430)
Q Consensus 412 ~~l~~~~~~~~~~~r~~~L 430 (430)
++|+.+++++.++++++||
T Consensus 392 ~~i~G~dgt~~g~~k~~~l 410 (519)
T KOG1357|consen 392 KHIMGEDGTNRGRQKIERL 410 (519)
T ss_pred HhhcCCCcccHHHHHHHHH
Confidence 9999999999999999875
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-56 Score=469.14 Aligned_cols=279 Identities=45% Similarity=0.791 Sum_probs=255.0
Q ss_pred ccccccceeeEEeccccccccccccccCCccccCCCCchhhHHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCC
Q psy2206 140 MLSKGASKSNILFQAHTNGFANGISKSNGLLSSNGGYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETP 219 (430)
Q Consensus 140 ~l~~~~~~l~~~~~gh~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~ 219 (430)
.+..|.+|++++++||++||++++++.. ....++||+||+++||+||+|++|+|++|||+|||+++||++|++++|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (489)
T PLN02483 9 ALTTYFSYGLLFAFGQLRDFFRAILDWW-KTSNLQGYAPICLGLEDFYIRRLYLRIQDCFNRPIASAPDAWFDVVERVSN 87 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc-ccccccCCCccccCHHHHHHHHhhhhcccccCCCCCCCCCCeEEEEEeecC
Confidence 4566778999999999999999999633 355679999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC---------------------------
Q psy2206 220 DYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA--------------------------- 272 (430)
Q Consensus 220 d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~--------------------------- 272 (430)
|++|+++++|+.+++|||+|||||||+++++.+.+++.+++++||+++|++|.
T Consensus 88 ~~~~~~~~~~~~~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~~ai~~ 167 (489)
T PLN02483 88 DNNKTLKRTTKTRRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVF 167 (489)
T ss_pred CCCceEEecCCCceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 99999999999999999999999999987678899999999999999999995
Q ss_pred -------------------------------------------------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEc
Q psy2206 273 -------------------------------------------------PSSLEAGLQKALLEGQPHSGKPWRKILIVVE 303 (430)
Q Consensus 273 -------------------------------------------------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E 303 (430)
+++|+++|++....++|++|+|+++++|++|
T Consensus 168 ~~G~~an~~~i~al~~~Gd~Vi~d~~~h~s~~~~~~~~Ga~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~k~livve 247 (489)
T PLN02483 168 GMGYATNSTIIPALIGKGGLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIVE 247 (489)
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEcchhhHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhhhhccccccccCCceEEEEEC
Confidence 2778888887666678999999999999999
Q ss_pred CccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccccceeecCHHHH
Q psy2206 304 GIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTI 383 (430)
Q Consensus 304 ~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li 383 (430)
+++||+|++++|++|+++|++||++||+||||++|.+|++|+|+++++++.+.++||+++||||+||+.|||++++++++
T Consensus 248 ~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~~GG~i~~~~~li 327 (489)
T PLN02483 248 GIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGSCGGYIAGSKELI 327 (489)
T ss_pred CCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhcccCceEEEcCHHHH
Confidence 99999999999999999999999999999999999999999999998888777899999999999999999999999999
Q ss_pred HHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCC
Q psy2206 384 DYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLEN 419 (430)
Q Consensus 384 ~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~ 419 (430)
+.++....++.++++++|+.+++++++|++++++++
T Consensus 328 ~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g 363 (489)
T PLN02483 328 QYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDG 363 (489)
T ss_pred HHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCcc
Confidence 999987766777878888888889999999876654
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-45 Score=371.81 Aligned_cols=218 Identities=40% Similarity=0.680 Sum_probs=190.5
Q ss_pred hhHHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHH
Q psy2206 179 LYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKE 258 (430)
Q Consensus 179 l~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ 258 (430)
+.+.++.+...+.||.+ +.+.+.++.++... | ++++||||||||||++|| .+++++++
T Consensus 7 ~~~~l~~~~~~~~~r~~-----~~~~~~~~~~~~~~--------------~--~~~~nf~SNdYLGLa~~~-~~~~a~~~ 64 (388)
T COG0156 7 LRQALQALKAEGLYRGL-----RALDRRQGLAIRAD--------------G--RKVLNFCSNDYLGLASHP-ELIEAAKA 64 (388)
T ss_pred HHHHHHHHHhhccccch-----hhccccCCcceecC--------------C--ceeEeeeccCcccccCCH-HHHHHHHH
Confidence 44566777788888888 45555555555443 4 889999999999999996 79999999
Q ss_pred HHHHhCCCCCCCCC------------------------------------------------------------------
Q psy2206 259 SVKQSGCALCSPSA------------------------------------------------------------------ 272 (430)
Q Consensus 259 ai~~yG~g~~~sr~------------------------------------------------------------------ 272 (430)
++++||.|+++||+
T Consensus 65 ~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~e~al~f~SGy~AN~~~i~~l~~~~dli~~D~lnHASiidG~rls~ 144 (388)
T COG0156 65 AIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAEAALLFSSGFVANLGLLSALLKKGDLIFSDELNHASIIDGIRLSR 144 (388)
T ss_pred HHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEEcccchhHHHHHHHhcCCCcEEEEechhhhhHHHHHHhCC
Confidence 99999999999997
Q ss_pred ----------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCC
Q psy2206 273 ----------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGP 342 (430)
Q Consensus 273 ----------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~ 342 (430)
+++||++|++.. ..++ ++++||+||||||+|+++||++|++|+++|+++|+|||||++|++|+
T Consensus 145 a~~~~f~HnD~~~Le~~l~~~~------~~~~-~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~ 217 (388)
T COG0156 145 AEVRRFKHNDLDHLEALLEEAR------ENGA-RRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGP 217 (388)
T ss_pred CcEEEecCCCHHHHHHHHHhhh------ccCC-CceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCC
Confidence 288999998742 1123 57899999999999999999999999999999999999999999999
Q ss_pred CCCccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchH
Q psy2206 343 TGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDE 422 (430)
Q Consensus 343 ~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~ 422 (430)
+|+|+++++|+.+.++||+++||||+||+.|||++++..++++|++.+++++||+++||..+++++++|+++++. .+
T Consensus 218 ~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~Gg~v~g~~~~~d~L~~~ar~~ifStalpP~~aaa~~~al~~l~~~---~~ 294 (388)
T COG0156 218 NGRGLAEHFGLEPEEVDIIVGTLGKALGSSGGYIAGSAALIDYLRNRARPFIFSTALPPAVAAAALAALRILEEG---PE 294 (388)
T ss_pred CCccHHHHhCCCCccceEEEEEchhhhcccCceeeCcHHHHHHHHHhCCceeccCCCCHHHHHHHHHHHHHHHhC---HH
Confidence 999999999998888999999999999999999999999999999999999999999999999999999999755 24
Q ss_pred HHhhhh
Q psy2206 423 GNVRHS 428 (430)
Q Consensus 423 ~~~r~~ 428 (430)
.+++++
T Consensus 295 ~r~~L~ 300 (388)
T COG0156 295 RRERLQ 300 (388)
T ss_pred HHHHHH
Confidence 445444
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-38 Score=327.33 Aligned_cols=263 Identities=21% Similarity=0.316 Sum_probs=182.2
Q ss_pred cCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCccccccc-----ccccceeeEEeccccccccccccc
Q psy2206 91 TGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASML-----SKGASKSNILFQAHTNGFANGISK 165 (430)
Q Consensus 91 tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~~l-----~~~~~~l~~~~~gh~~~~~~~~~~ 165 (430)
+|+.+++|||+|||||||+ +||.+++++++++++||+|+||||++.|+.. ++.++ .+++
T Consensus 98 ~~~~r~~l~FsSndYLGL~-~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA---------------~f~g 161 (476)
T PLN02955 98 KGRFKKLLLFSGNDYLGLS-SHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLA---------------DLKK 161 (476)
T ss_pred cCCCceEEEeeccCccCCC-CCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHH---------------HHHC
Confidence 4667899999999999999 6999999999999999999999999999862 21111 1111
Q ss_pred cCCccccCCCCchhhHHHHHHHHhhcccccccccCcccccCCCC-EEEEecCCCCCCCccccccCCccceeeecCCCccC
Q psy2206 166 SNGLLSSNGGYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGA-IITIKDRETPDYGWTFKYTGTESTCLNLASYNYLG 244 (430)
Q Consensus 166 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~-~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLG 244 (430)
.+...--..||..=..-+..+- -+.+.... ..... | +..+-|.- -
T Consensus 162 ~e~all~sSGy~AN~~~i~aL~--------------~~~~~~~~~~~~~~--------------~--~~d~i~~D--~-- 207 (476)
T PLN02955 162 KEDCLVCPTGFAANMAAMVAIG--------------SVASLLAASGKPLK--------------N--EKVAIFSD--A-- 207 (476)
T ss_pred CCcEEEECChHHHHHHHHHHHh--------------hccccccccccccC--------------C--CCcEEEEe--c--
Confidence 0110000122221000000000 00000000 00000 1 11111211 0
Q ss_pred CCCCcHHHHHHHHHHHHHhC-CCCC--CCCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHH
Q psy2206 245 FGENTGLCTERSKESVKQSG-CALC--SPSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRL 321 (430)
Q Consensus 245 l~~~~~~v~~a~~~ai~~yG-~g~~--~sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~L 321 (430)
..| .-+++.+. ..++-| ...- --..+++|+++|++. +.++++||+||||||+|+++||++|++|
T Consensus 208 -~~H-aSI~dG~~-ls~~~~~a~~~~f~HND~~~Le~~L~~~----------~~~~~~Vv~EgV~SmdGdiapL~eL~~L 274 (476)
T PLN02955 208 -LNH-ASIIDGVR-LAERQGNVEVFVYRHCDMYHLNSLLSSC----------KMKRKVVVTDSLFSMDGDFAPMEELSQL 274 (476)
T ss_pred -cch-HHHHHHHH-hccccCCceEEEeCCCCHHHHHHHHHhC----------CCCceEEEEeCCCCCCCCcCCHHHHHHH
Confidence 112 12233222 111101 1000 001179999999763 1245789999999999999999999999
Q ss_pred HHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCCcH
Q psy2206 322 KNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPP 401 (430)
Q Consensus 322 a~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P 401 (430)
|++||++|||||||++|++|++|+|+++++|+. .++||+++||||+||+.|||++++++++++++..+++++||+++||
T Consensus 275 ~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~-~di~ii~~TLsKA~G~~GGfi~gs~~~~~~l~~~~~~~ifStalpp 353 (476)
T PLN02955 275 RKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCE-ADVDLCVGTLSKAAGCHGGFIACSKKWKQLIQSRGRSFIFSTAIPV 353 (476)
T ss_pred HHHcCcEEEEcccccCceecCCCCcHHHHhCCC-CCCcEEEEeCccchhccCceeecHHHHHHHHHHhCCCCeecccccH
Confidence 999999999999999999999999999999987 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcc
Q psy2206 402 PVAMQILTSMRIIMGL 417 (430)
Q Consensus 402 ~~~aaalaaL~~l~~~ 417 (430)
+.++++++++++++.+
T Consensus 354 ~~aaa~laal~l~~~~ 369 (476)
T PLN02955 354 PMAAAAYAAVVVARKE 369 (476)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999999765
|
|
| >KOG1359|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=303.73 Aligned_cols=192 Identities=36% Similarity=0.587 Sum_probs=172.0
Q ss_pred cccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCCH-------
Q psy2206 201 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSAP------- 273 (430)
Q Consensus 201 r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~~------- 273 (430)
|+|+|.+++.|.+. |..+.+||||.||||||+.|| +++++.++++++||.|..++|..
T Consensus 50 rVi~s~q~p~i~v~--------------G~~k~ilnFcaNnYLGLsshP-eii~a~~~aleeyGaGlssvrfIcGtq~iH 114 (417)
T KOG1359|consen 50 RVITSRQGPTIQVK--------------GSDKKILNFCANNYLGLSSHP-EIINAGQKALEEYGAGLSSVRFICGTQDIH 114 (417)
T ss_pred eEEeecccceEEEe--------------ccccceeeecccccccccCCh-HHHHHHHHHHHHhCCCccceeEEecchHHH
Confidence 78999999999975 555899999999999999986 78999999999999999999980
Q ss_pred -----------------------------------------------------------------HHHHHHHHHHhhcCC
Q psy2206 274 -----------------------------------------------------------------SSLEAGLQKALLEGQ 288 (430)
Q Consensus 274 -----------------------------------------------------------------~~Le~~L~~~~~~~~ 288 (430)
.+||..|.++
T Consensus 115 k~LE~kiAqfh~rED~ilypscfdANag~feail~pedAvfSDeLNhASIIdGirLckry~h~dv~~l~~~l~~a----- 189 (417)
T KOG1359|consen 115 KLLESKIAQFHGREDTILYPSCFDANAGAFEAILTPEDAVFSDELNHASIIDGIRLCKRYRHVDVFDLEHCLISA----- 189 (417)
T ss_pred HHHHHHHHHHhCCCceEEeccccccchHHHHHhcChhhhhhccccccchhhhhhHHHhhhccchhHHHHHHHHHh-----
Confidence 1222222221
Q ss_pred CCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccch
Q psy2206 289 PHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKS 368 (430)
Q Consensus 289 p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa 368 (430)
...+.++|++|++|||||+++||.+|++|+++||++|++||+|++|++|++|+|+.|.+|+. .++||+.+||+|+
T Consensus 190 ----~k~r~klv~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm-~~vdiinsTLgKA 264 (417)
T KOG1359|consen 190 ----CKMRLKLVVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVM-GDVDIINSTLGKA 264 (417)
T ss_pred ----hhheEEEEEecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCC-Ccceehhhhhhhh
Confidence 12267899999999999999999999999999999999999999999999999999999997 6899999999999
Q ss_pred hc-cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 369 FG-SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 369 ~G-~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
+| +.|||..+++.+++.|+..+++|+||.++||.+...+.+++++++..
T Consensus 265 lGga~GGyttgp~~li~llrqr~RpylFSnslppavV~~a~ka~dllm~s 314 (417)
T KOG1359|consen 265 LGGASGGYTTGPKPLISLLRQRSRPYLFSNSLPPAVVGMAAKAYDLLMVS 314 (417)
T ss_pred hcCCCCCCccCChhHHHHHHhcCCceeecCCCChhhhhhhHHHHHHHHhh
Confidence 97 89999999999999999999999999999999999999999998765
|
|
| >KOG1360|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=302.55 Aligned_cols=179 Identities=30% Similarity=0.502 Sum_probs=167.3
Q ss_pred cceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC---------------------------------------
Q psy2206 232 STCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA--------------------------------------- 272 (430)
Q Consensus 232 ~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~--------------------------------------- 272 (430)
+++-.|||||||||+.|| .|.+|+.+.+++||.|.|++|.
T Consensus 171 k~VtVWCSNDYLgms~Hp-~V~~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK~aALlFsSCfVANDstLf 249 (570)
T KOG1360|consen 171 KKVTVWCSNDYLGMSRHP-EVLDAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQKEAALLFSSCFVANDSTLF 249 (570)
T ss_pred CceEEEecCccccccCCh-HHHHHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcCcceeeeeeeeeccchHHH
Confidence 789999999999999996 7899999999999999999998
Q ss_pred ---------------------------------------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCccc
Q psy2206 273 ---------------------------------------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIV 313 (430)
Q Consensus 273 ---------------------------------------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~ 313 (430)
+++||++|+... +...++|..|+|+||+|.++
T Consensus 250 tLak~lpgcei~SD~gNHASMI~GIrns~v~K~IFrHND~~hL~~lL~~~~---------~svPKivAFEtVhSM~Gavc 320 (570)
T KOG1360|consen 250 TLAKKLPGCEIFSDEGNHASMIQGIRNSRVPKHIFRHNDLDHLEQLLQSSP---------KSVPKIVAFETVHSMDGAVC 320 (570)
T ss_pred HHHHHCCCcEEeccccchHHHHHHhhhcCCcceeeccCCHHHHHHHHHhCC---------CCCCceEEEeeeeccCCCcC
Confidence 388999998741 23466899999999999999
Q ss_pred CHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcc
Q psy2206 314 RLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVR 393 (430)
Q Consensus 314 ~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~ 393 (430)
||++|++++++||++.++||+|+.|.||+.|.|+.|.-|+- .++||+.|||+|+||..||||+++..++|++|..+.+|
T Consensus 321 pleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm-~kvDiIsGTLgKafGcVGGYIAat~~LvDmiRSyAaGF 399 (570)
T KOG1360|consen 321 PLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVM-HKVDIISGTLGKAFGCVGGYIAATRKLVDMIRSYAAGF 399 (570)
T ss_pred CHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcc-hhhhhcccchhhhcccccceehhhhhHHHHHHHhcCce
Confidence 99999999999999999999999999999999999999986 68999999999999999999999999999999999999
Q ss_pred cccCCCcHHHHHHHHHHHHHHHccCCch
Q psy2206 394 SYATSMPPPVAMQILTSMRIIMGLENGD 421 (430)
Q Consensus 394 ~~s~s~~P~~~aaalaaL~~l~~~~~~~ 421 (430)
+|++++||.+++.+++++++++.++|..
T Consensus 400 IFTTSLPP~vl~GAleaVr~lk~~eg~~ 427 (570)
T KOG1360|consen 400 IFTTSLPPMVLAGALEAVRILKSEEGRV 427 (570)
T ss_pred EEecCCChHHHHhHHHHHHHHhhhhhHH
Confidence 9999999999999999999999887743
|
|
| >KOG1358|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=274.64 Aligned_cols=273 Identities=29% Similarity=0.423 Sum_probs=201.0
Q ss_pred ccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCccccccccccc
Q psy2206 66 VTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASMLSKGA 145 (430)
Q Consensus 66 i~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~~l~~~~ 145 (430)
+.++.+.++.+.++ +|+||+|+|||||.. ++++++.|..+|++||+|+||||.++||.--
T Consensus 81 ~e~~~~~~~~i~G~----------------~~~N~aS~NfL~l~~-~~~ike~a~~~lrkyGvGsCGPrGFYGt~Dv--- 140 (467)
T KOG1358|consen 81 LESVMLPHVTIDGK----------------DVLNFASANFLGLIE-NEEIKEEASFTLRKYGVGSCGPRGFYGTIDV--- 140 (467)
T ss_pred cccccCCceEecCc----------------eeecccchhhhhhcc-cHHHHHHHHHHHHHhCCCCcCCCccccccee---
Confidence 46888888888665 899999999999995 8899999999999999999999999999821
Q ss_pred ceeeEEeccccc--cccccccccCCccccCCCCchhhHHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCc
Q psy2206 146 SKSNILFQAHTN--GFANGISKSNGLLSSNGGYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGW 223 (430)
Q Consensus 146 ~~l~~~~~gh~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~ 223 (430)
|.. +-+.++++.++.---..+|+-+.+ . .|.-+..|..+.+++
T Consensus 141 ---------HldlE~~iakF~G~E~aivYs~gF~ti~S------------~------ipafsKrGDIi~~de-------- 185 (467)
T KOG1358|consen 141 ---------HLDLEKRIAKFMGTEDAIVYSYGFSTIES------------A------IPAFSKRGDIIFVDE-------- 185 (467)
T ss_pred ---------ecccHHHHHHhhCCcceeeeccccchhhh------------c------chhhhccCcEEEEeh--------
Confidence 111 112233333332111133332111 1 244456666666553
Q ss_pred cccccCCccceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEc
Q psy2206 224 TFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVE 303 (430)
Q Consensus 224 ~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E 303 (430)
.+||+ ++...++-+.- +..-....+++||+++.+....-+.+.+.+-.+++||+|
T Consensus 186 ----------~~nfa--------------Iq~GlqlSRS~-i~~Fkhndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~E 240 (467)
T KOG1358|consen 186 ----------AVNFA--------------IQKGLQLSRST-ISYFKHNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVE 240 (467)
T ss_pred ----------hhhHH--------------HHHHHhhhhhe-eEEecCCCHHHHHHhccCcchhhhhccccccceEEEEEE
Confidence 12211 12222222210 001111226788888755321111111112237799999
Q ss_pred CccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccccceeecCHHHH
Q psy2206 304 GIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTI 383 (430)
Q Consensus 304 ~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li 383 (430)
|+|-++|+++||++|++++.||...||+||.+++|++|++|||+++|+++...++||++++++-++++.|||++|+.-++
T Consensus 241 Gl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~GgFc~G~~~i~ 320 (467)
T KOG1358|consen 241 GLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASGGGFCAGKSFIA 320 (467)
T ss_pred eeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccccCceeecceeeE
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred HHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 384 DYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 384 ~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
++.+..+.+|+||.++||+.+.++..++.++..+.
T Consensus 321 ~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~~~~p 355 (467)
T KOG1358|consen 321 DHQRLSGSGYCFSASLPPYLAGAAIKAILIEEWNP 355 (467)
T ss_pred eeeeccccceeeeccCchhhhhhHHHHHHHHhhCc
Confidence 99999999999999999999999999999987664
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-31 Score=282.08 Aligned_cols=195 Identities=33% Similarity=0.543 Sum_probs=166.8
Q ss_pred ccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC---------
Q psy2206 202 PVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA--------- 272 (430)
Q Consensus 202 ~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~--------- 272 (430)
++.+++|+++++. | +++|||+|+|||||..|+ .+++++.+++++||.++|++|.
T Consensus 95 ~~~~~~G~~i~~~--------------G--~~~id~~s~~~lgl~~~~-~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~ 157 (481)
T PLN02822 95 VLESAAGPHTIIN--------------G--KDVVNFASANYLGLIGNE-KIKESCTSALEKYGVGSCGPRGFYGTIDVHL 157 (481)
T ss_pred ceecCCCCeEEEC--------------C--ceEEEeECCCcCCCCCCH-HHHHHHHHHHHHhCCCCcccCccccCHHHHH
Confidence 5677888888853 5 899999999999999875 8999999999999999998876
Q ss_pred -------------------------------------------------------------------HHHHHHHHHHHhh
Q psy2206 273 -------------------------------------------------------------------PSSLEAGLQKALL 285 (430)
Q Consensus 273 -------------------------------------------------------------------~~~Le~~L~~~~~ 285 (430)
.++|+..+++...
T Consensus 158 ~Lee~La~~~~~~~~i~~s~G~~a~~sai~a~~~~gd~Ii~d~~~H~s~~~~~~ls~~~~~~~~~nd~~~l~~~l~~~~~ 237 (481)
T PLN02822 158 DCETKIAKFLGTPDSILYSYGLSTIFSVIPAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNTLEKLTA 237 (481)
T ss_pred HHHHHHHHHhCCCCEEEECCHHHHHHHHHHHhCCCCCEEEEeCCccHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh
Confidence 1456666654210
Q ss_pred cCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCc
Q psy2206 286 EGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTY 365 (430)
Q Consensus 286 ~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~Tl 365 (430)
.. +..+..+++||+|++|+|+|++.||++|+++|++||++||+||+|++|++|++|+|+++++++.+.++||+++||
T Consensus 238 ~~---~~~~~~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~ 314 (481)
T PLN02822 238 EN---KRKKKLRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAM 314 (481)
T ss_pred hh---cccCCCcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecc
Confidence 00 000112479999999999999999999999999999999999999999999999999999998656789999999
Q ss_pred cchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 366 TKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 366 SKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
||++|++|||++++++++++++...++++|++++||+.+++++++|+.+++
T Consensus 315 sKalg~~GG~i~g~~~ii~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~~ 365 (481)
T PLN02822 315 GHALATEGGFCTGSARVVDHQRLSSSGYVFSASLPPYLASAAITAIDVLED 365 (481)
T ss_pred hhhhhhCCeEEEcCHHHHHHHHhcCCceeeccccCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988888899998999999999999998865
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-31 Score=270.09 Aligned_cols=207 Identities=30% Similarity=0.489 Sum_probs=168.8
Q ss_pred hHHHHHHHHhhcccccccccCcccccCCCC-----EEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHH
Q psy2206 180 YEKFVLFYSRYVYRRIVDCFNRPVTSVPGA-----IITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTE 254 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~-----~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~ 254 (430)
.+.+++...+++||.. +++.+.+++ ++...+ | ++++||+|||||||+.|| .+++
T Consensus 8 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-------------~--~~~~~~~sn~ylgl~~~p-~v~~ 66 (402)
T TIGR01821 8 NKEIDKLHLEGRYRVF-----ADLERQAGEFPFAQWHRPDG-------------A--KDVTVWCSNDYLGMGQHP-EVLQ 66 (402)
T ss_pred HHHHHHHHHcCCCcee-----eeccccccCCCcceEEecCC-------------C--eeEEEeEccCcCCCCCCH-HHHH
Confidence 3467788889999988 566655543 222221 3 789999999999999986 7999
Q ss_pred HHHHHHHHhCCCCCCCCC-------H------------------------------------------------------
Q psy2206 255 RSKESVKQSGCALCSPSA-------P------------------------------------------------------ 273 (430)
Q Consensus 255 a~~~ai~~yG~g~~~sr~-------~------------------------------------------------------ 273 (430)
++.+++++||.+++++|. .
T Consensus 67 a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~~~~l~~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~ 146 (402)
T TIGR01821 67 AMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKESALVFTSGYVANDATLATLAKIIPGCVIFSDELNHASMIE 146 (402)
T ss_pred HHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCCCeEEEECchHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHH
Confidence 999999999998887765 0
Q ss_pred -----------------HHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEecccc
Q psy2206 274 -----------------SSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHS 336 (430)
Q Consensus 274 -----------------~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~ 336 (430)
++|+++++.. .+.++++|++|+++||+|++.|+++|+++|++||++||+||||+
T Consensus 147 ~~~~~g~~~~~~~~~d~~~l~~~l~~~---------~~~~~~~v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~ 217 (402)
T TIGR01821 147 GIRHSGAEKFIFRHNDVAHLEKLLQSV---------DPNRPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHA 217 (402)
T ss_pred HHHHcCCeEEEECCCCHHHHHHHHHhc---------cCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCccc
Confidence 1222222210 11246799999999999999999999999999999999999999
Q ss_pred ccccCCCCCccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 337 IGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 337 ~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
+|++|+.|.|+.+++++. +++||+++||||+||++|||+++++++++.++....++.|+++.+|+.+++++++|+.+++
T Consensus 218 ~G~~g~~g~g~~~~~~~~-~~~div~~t~sKa~g~~GG~i~~~~~~~~~l~~~~~~~~~t~~~~~~~~aaa~aaL~~~~~ 296 (402)
T TIGR01821 218 VGLYGPRGGGIAERDGLM-HRIDIIEGTLAKAFGVVGGYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKE 296 (402)
T ss_pred ccccCCCCCccchhccCC-CCCeEEEEechhhhccCCceeecCHHHHHHHHHhCcCceecCcCCHHHHHHHHHHHHHhhc
Confidence 999999999987777764 3569999999999999999999999999999987777788888999999999999999876
Q ss_pred c
Q psy2206 417 L 417 (430)
Q Consensus 417 ~ 417 (430)
.
T Consensus 297 ~ 297 (402)
T TIGR01821 297 S 297 (402)
T ss_pred C
Confidence 5
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=268.59 Aligned_cols=257 Identities=21% Similarity=0.335 Sum_probs=170.9
Q ss_pred EEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCcccccccccccceeeEEeccccccccccccccCCccccCCCCc
Q psy2206 98 LNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASMLSKGASKSNILFQAHTNGFANGISKSNGLLSSNGGYP 177 (430)
Q Consensus 98 lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~~l~~~~~~l~~~~~gh~~~~~~~~~~~~~~~~~~~~~~ 177 (430)
|||+|||||||+ +||.+++++++++++||+|+||||..+|++-... ....-+..+++.+...--..|+.
T Consensus 1 ~~f~s~dyLgl~-~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~----------~LE~~lA~~~g~e~al~~~sG~~ 69 (392)
T PLN03227 1 LNFATHDFLSTS-SSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHL----------ELEQCMAEFLGTESAILYSDGAS 69 (392)
T ss_pred CCCcCcCccCCC-CCHHHHHHHHHHHHHhCCCCcccccccCChHHHH----------HHHHHHHHHhCCCcEEEecCcHH
Confidence 699999999999 6999999999999999999999999988762100 00000111111111100012222
Q ss_pred hhhHHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHH
Q psy2206 178 DLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSK 257 (430)
Q Consensus 178 ~l~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~ 257 (430)
....-+. ....+|..|.+.+ + .|+ .+...+
T Consensus 70 a~~~~i~------------------~l~~~GD~Vl~~~------------------------~------~h~-s~~~~~- 99 (392)
T PLN03227 70 TTSSTVA------------------AFAKRGDLLVVDR------------------------G------VNE-ALLVGV- 99 (392)
T ss_pred HHHHHHH------------------HhCCCCCEEEEec------------------------c------ccH-HHHHHH-
Confidence 2111000 1123566665442 0 111 122221
Q ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHhhcC-CCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEecccc
Q psy2206 258 ESVKQSGCALCSPSAPSSLEAGLQKALLEG-QPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHS 336 (430)
Q Consensus 258 ~ai~~yG~g~~~sr~~~~Le~~L~~~~~~~-~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~ 336 (430)
.+.+..+..-....++++++.++...... +.+.....++++|++|+++||+|++.||++|+++|++||++||+||+|+
T Consensus 100 -~l~~~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~ 178 (392)
T PLN03227 100 -SLSRANVRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKELVALKEEFHYRLILDESFS 178 (392)
T ss_pred -HHcCCeEEEeCCCCHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHHHHHHHHHcCCEEEEECccc
Confidence 11111111111112466666654421000 0000001257899999999999999999999999999999999999999
Q ss_pred ccccCCCCCccceecCCCC-CCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHH
Q psy2206 337 IGALGPTGRGVTEYFGIDP-REVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 337 ~G~lG~~GrG~~e~~g~~~-~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
+|++|++|+|.++++|+.| .++||++.|+||++|..||++++++++++.++.....+.|++++||+.+++++++++.+.
T Consensus 179 ~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~ 258 (392)
T PLN03227 179 FGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVGGMTVGSEEVVDHQRLSGSGYCFSASAPPFLAKADATATAGEL 258 (392)
T ss_pred ccccCCCCCcHHHHcCCCCCCCceEEEeechhhhhccCcEEecCHHHHHHHHHhCcCccccCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999864 577999999999999999999999999999887677778888888988888888886654
Q ss_pred c
Q psy2206 416 G 416 (430)
Q Consensus 416 ~ 416 (430)
+
T Consensus 259 ~ 259 (392)
T PLN03227 259 A 259 (392)
T ss_pred c
Confidence 3
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=263.11 Aligned_cols=212 Identities=32% Similarity=0.513 Sum_probs=168.7
Q ss_pred HHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHHH
Q psy2206 181 EKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESV 260 (430)
Q Consensus 181 ~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai 260 (430)
+.++.....++||.. +++...+++++.... +...|+.++++||+|||||||+.|| .+++++.+++
T Consensus 9 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~s~dylgl~~~p-~v~~a~~~~~ 73 (407)
T PRK09064 9 NALDRLKAEGRYRVF-----ADLERIAGRFPYATW---------RRPDGGEREVTVWCSNDYLGMGQHP-KVIEAMIEAL 73 (407)
T ss_pred HHHHHHHHcCCCcee-----eecccccCCCCceEE---------EeecCCCceEEEEECCCCcCCCCCH-HHHHHHHHHH
Confidence 456777888999877 566665554321100 0011212789999999999999985 7999999999
Q ss_pred HHhCCCCCCCCC--------------------------------------------------------------------
Q psy2206 261 KQSGCALCSPSA-------------------------------------------------------------------- 272 (430)
Q Consensus 261 ~~yG~g~~~sr~-------------------------------------------------------------------- 272 (430)
++||.+++++|.
T Consensus 74 ~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~~~~~~~~sG~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~ 153 (407)
T PRK09064 74 DRCGAGAGGTRNISGTNHYHVELERELADLHGKEAALVFTSGYVSNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRSR 153 (407)
T ss_pred HHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcC
Confidence 999998877765
Q ss_pred ----------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCC
Q psy2206 273 ----------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGP 342 (430)
Q Consensus 273 ----------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~ 342 (430)
+++||++++.. .+.++++|++|+++||+|++.|+++|+++|++||++||+||||++|++|+
T Consensus 154 ~~~~~~~~~d~~~le~~l~~~---------~~~~~~~v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~ 224 (407)
T PRK09064 154 CEKHIFRHNDVAHLEELLAAA---------DPDRPKLIAFESVYSMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGP 224 (407)
T ss_pred CcEEEECCCCHHHHHHHHHhc---------cCCCCeEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEECCCcccccCC
Confidence 02344443321 01245799999999999999999999999999999999999999999999
Q ss_pred CCCccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 343 TGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 343 ~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
+|.|++++.++. +++||+++||||+||+.|||+++++++++.++....++.++++.+|+.+++++++++.+++.
T Consensus 225 ~g~g~~~~~~~~-~~~div~~t~sKa~g~~GG~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~~aa~~al~~~~~~ 298 (407)
T PRK09064 225 RGGGIAERDGLM-DRIDIIEGTLAKAFGVMGGYIAGSAALVDAVRSYAPGFIFTTSLPPAIAAAALASIRHLKES 298 (407)
T ss_pred CCCChHHhcCCC-CCCeEEEEecchhhhccCceEecCHHHHHHHHHhCccccccCcCCHHHHHHHHHHHHHHhcC
Confidence 999987777764 35699999999999999999999999999998877777788889999999999999998765
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-30 Score=263.26 Aligned_cols=211 Identities=30% Similarity=0.494 Sum_probs=170.4
Q ss_pred HHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHHH
Q psy2206 181 EKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESV 260 (430)
Q Consensus 181 ~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai 260 (430)
+.++....+++||.. +++.+.+|+++.+.-... + .| +++|||+|||||||++|| ++++++++++
T Consensus 9 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~-------~~--~~~~~~~sn~ylgl~~~p-~v~~a~~~~~ 72 (406)
T PRK13393 9 RQLDGLRREGRYRVF-----ADLERQAGAFPRATHHGP-D-------GP--REVTVWCSNDYLGMGQHP-AVLAAMHEAL 72 (406)
T ss_pred HHHHHHHHcCCCcee-----eeccccCCCcceeEEecc-C-------CC--ccEEEeecccccCCCCCH-HHHHHHHHHH
Confidence 467778889999977 577777776543210000 0 12 789999999999999985 7999999999
Q ss_pred HHhCCCCCCCCC-------H------------------------------------------------------------
Q psy2206 261 KQSGCALCSPSA-------P------------------------------------------------------------ 273 (430)
Q Consensus 261 ~~yG~g~~~sr~-------~------------------------------------------------------------ 273 (430)
++||.++++++. .
T Consensus 73 ~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g 152 (406)
T PRK13393 73 DTCGAGAGGTRNISGTNHYHVLLEAELADLHGKEAALLFTSGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGIRHSR 152 (406)
T ss_pred HHcCCCCcccccccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHHHcC
Confidence 999998877765 0
Q ss_pred -----------HHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCC
Q psy2206 274 -----------SSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGP 342 (430)
Q Consensus 274 -----------~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~ 342 (430)
++|+++++.. .+.++++|++|+|+||+|++.|+++|.++|++|++++|+||+|++|++|+
T Consensus 153 ~~~~~~~~~d~~~l~~~l~~~---------~~~~~~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~ 223 (406)
T PRK13393 153 AEKRIFRHNDPADLERKLSDL---------DPHRPKLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGP 223 (406)
T ss_pred CeEEEeCCCCHHHHHHHHHhc---------cCCCCEEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCC
Confidence 2222222210 01245789999999999999999999999999999999999999999999
Q ss_pred CCCccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 343 TGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 343 ~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
+|.|+++++++. .++||+++||||++|++|||+++++++++.++...+++.++++.+|+.+++++++|+.+++.
T Consensus 224 ~G~g~~~~~~~~-~~~~i~~~tlsKa~g~~GG~~~~~~~~~~~l~~~~~~~~~t~~~~p~~~aa~~aaL~~~~~~ 297 (406)
T PRK13393 224 RGGGIAEREGLA-DRLTIIEGTLAKAFGVMGGYITGSAALCDFIRSFASGFIFTTSLPPAVAAGALASVRHLKAS 297 (406)
T ss_pred CCCchhhhcCCC-CCCeEEEEeCchhhcccCceeeCCHHHHHHHHHhCcCceecCccCHHHHHHHHHHHHHHhhC
Confidence 999988877776 35789999999999999999999999999999877777788889999999999999988654
|
|
| >KOG1357|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-30 Score=263.34 Aligned_cols=190 Identities=38% Similarity=0.625 Sum_probs=151.2
Q ss_pred cccccceeeEEeccccccccccccccCCc--cccCCCCchhhHHHHHHHHhhcccccccccCcccccCCCCEEEEecCCC
Q psy2206 141 LSKGASKSNILFQAHTNGFANGISKSNGL--LSSNGGYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRET 218 (430)
Q Consensus 141 l~~~~~~l~~~~~gh~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~ 218 (430)
|..+.+|++++++||++||+++++..... ...++||+||+++||+||+|++|+|++|||+|||+++||++|+++||++
T Consensus 43 l~ty~~y~~l~~~ghvrd~~~~~f~~~~~~~~~~~~g~~ply~~Fe~FY~Rriy~ri~Dc~~RPi~~VPG~~v~l~dR~S 122 (519)
T KOG1357|consen 43 LATYLSYLLLFVFGHVRDFFGKIFFVKKYKKDNEMDGYAPLYSSFESFYSRRIYRRIRDCFERPICSVPGAWVDLMDRVS 122 (519)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheehhhhcccccccCccchhhhHHHHHHHHHHHHHhHhhcCCCcCCCCceEEeeeeec
Confidence 45566888999999999999999876544 4456999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC-------HHHHHHHHHHHhhcCCCCC
Q psy2206 219 PDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA-------PSSLEAGLQKALLEGQPHS 291 (430)
Q Consensus 219 ~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~-------~~~Le~~L~~~~~~~~p~~ 291 (430)
+|+||+|+|+|+..++||++|||||||+++...|.+++.+++++||.+.|+||. -..||++.++. .|+|
T Consensus 123 ~D~n~tfk~tG~~~~~lNlgSYNYLGFa~~~g~ca~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f--~g~e-- 198 (519)
T KOG1357|consen 123 DDYNWTFKYTGTRSRCLNLGSYNYLGFAQSVGPCAEASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARF--LGVE-- 198 (519)
T ss_pred cCCCceEEeccceeeeeeecccccccccccCCcCChHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHh--cCCc--
Confidence 999999999999989999999999999999999999999999999999999998 36788887764 2332
Q ss_pred CCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEecc-ccccccCCCCCc
Q psy2206 292 GKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEA-HSIGALGPTGRG 346 (430)
Q Consensus 292 ~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEA-h~~G~lG~~GrG 346 (430)
.++|+.=| |+..-.. +-.|+.+ +.++|.||- |+..++|....|
T Consensus 199 -----~a~vF~mG-f~TNs~~-----~p~l~~~-gsLIiSDelNHaSi~~GaRLSg 242 (519)
T KOG1357|consen 199 -----DAIVFSMG-FATNSMN-----IPSLLGK-GSLIISDELNHASLITGARLSG 242 (519)
T ss_pred -----ceEEEecc-ccccccC-----cceeecC-CcceeeccccchheeccccccC
Confidence 23443333 2211111 1222333 678999994 444445654433
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-27 Score=247.27 Aligned_cols=221 Identities=28% Similarity=0.449 Sum_probs=168.0
Q ss_pred hHHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHH
Q psy2206 180 YEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKES 259 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~a 259 (430)
.+.+++...+++||.. +++.+.+++.+.+.- . ..-.| +++++|+|||||||+.|| .+++++.++
T Consensus 9 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~------~~~~~--~~~~~~~sn~yl~l~~~p-~v~~a~~~~ 72 (410)
T PRK13392 9 DAALAQLHQEGRYRVF-----ADLEREAGRFPRARD--H------GPDGP--RRVTIWCSNDYLGMGQHP-DVIGAMVDA 72 (410)
T ss_pred HHHHHHHHHcCCCccc-----cccccccCccceeee--c------ccCCC--ceEEEEECCCccCCCCCH-HHHHHHHHH
Confidence 3467778889999877 567776665443210 0 00013 789999999999999885 899999999
Q ss_pred HHHhCCCCCCCCC-------HHHHHHHHHHH----------------------h------------------------hc
Q psy2206 260 VKQSGCALCSPSA-------PSSLEAGLQKA----------------------L------------------------LE 286 (430)
Q Consensus 260 i~~yG~g~~~sr~-------~~~Le~~L~~~----------------------~------------------------~~ 286 (430)
+++||.++++++. ..+||+.|.+. . ..
T Consensus 73 ~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~~~~i~~~sG~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~ 152 (410)
T PRK13392 73 LDRYGAGAGGTRNISGTSHPHVLLERELADLHGKESALLFTSGYVSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRS 152 (410)
T ss_pred HHHcCCCCchhhhcccChHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHc
Confidence 9999988777765 01121111100 0 00
Q ss_pred CCC-----C-----------CCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCcccee
Q psy2206 287 GQP-----H-----------SGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEY 350 (430)
Q Consensus 287 ~~p-----~-----------~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~ 350 (430)
|.+ . .....++++|++|+++||+|.+.|+++|+++|++||++||+||||+.|++|++|.|++++
T Consensus 153 g~~~~~~~~~d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~ 232 (410)
T PRK13392 153 GAEKQVFRHNDLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAER 232 (410)
T ss_pred CCeEEEEeCCCHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhh
Confidence 000 0 000125679999999999999999999999999999999999999999999988888766
Q ss_pred cCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 351 FGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 351 ~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
.++. +++||+++||||+||++|||+++++++++.++....++.++++++|+.++++.++|+.++..
T Consensus 233 ~~~~-~~~div~~tlsK~~g~~GG~~~~~~~~~~~l~~~~~~~~~s~~~~~~~~~a~~aaL~~~~~~ 298 (410)
T PRK13392 233 DGLM-DRIDMIQGTLAKAFGCLGGYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTS 298 (410)
T ss_pred ccCC-CCCcEEEEEChHhhhcccchhhcCHHHHHHHHHhCcchhccCcCCHHHHHHHHHHHHHHhcC
Confidence 6654 45789999999999999999999999999999877777788888888888899999987654
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-28 Score=259.85 Aligned_cols=107 Identities=38% Similarity=0.619 Sum_probs=102.9
Q ss_pred cccCCccchHHHHHHHHHHHHHHhhhcccCCcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCCh
Q psy2206 34 MVKFGYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTG 113 (430)
Q Consensus 34 ~~~~~~~pl~~~~e~~~~r~l~~r~~d~~~rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~ 113 (430)
..++||+||+++||+||+||||+|++|||+|||+|+||++|+|++|+++|+||+|++||++++||||+|||||||+++++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~YLgl~~~~~ 118 (489)
T PLN02483 39 SNLQGYAPICLGLEDFYIRRLYLRIQDCFNRPIASAPDAWFDVVERVSNDNNKTLKRTTKTRRCLNLGSYNYLGFAAADE 118 (489)
T ss_pred ccccCCCccccCHHHHHHHHhhhhcccccCCCCCCCCCCeEEEEEeecCCCCceEEecCCCceEEEeecCCccCcCCCCH
Confidence 34589999999999999999999999999999999999999999999999999999999999999999999999998789
Q ss_pred hhHHHHHHHHhhhCCccccCCcccccc
Q psy2206 114 LCTERSKESVKQSGCALCSPSGEIASM 140 (430)
Q Consensus 114 ~~~~a~~~al~~yG~gs~~sr~~~g~~ 140 (430)
.|.+++++++++||+++||||...|+.
T Consensus 119 ~~~~~~~~ai~~~g~~~~~sr~~~g~~ 145 (489)
T PLN02483 119 YCTPRVIESLKKYSASTCSSRVDGGTT 145 (489)
T ss_pred HHHHHHHHHHHHhCCCCCccccccCCc
Confidence 999999999999999999999988865
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-26 Score=230.56 Aligned_cols=209 Identities=33% Similarity=0.553 Sum_probs=170.4
Q ss_pred hhHHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHH
Q psy2206 179 LYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKE 258 (430)
Q Consensus 179 l~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ 258 (430)
+...++++...++|+.. +++.+.+|+++.+.+ | +++|||+|||||||+.+| ++++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-------------g--~~~i~~~~~~~lg~~~~~-~v~~~~~~ 63 (393)
T TIGR01822 5 LAAELESIREAGLFKSE-----RIITSPQGADIRVAD-------------G--REVLNFCANNYLGLSSHP-DLIQAAKD 63 (393)
T ss_pred HHHHHHHHHHcCCCCcc-----cccccCCCceEEecC-------------C--ceEEEeeCCCccccCCCH-HHHHHHHH
Confidence 33568888889999965 789999999998743 5 889999999999999875 89999999
Q ss_pred HHHHhCCCCCCCCC------------------------------------------------------------------
Q psy2206 259 SVKQSGCALCSPSA------------------------------------------------------------------ 272 (430)
Q Consensus 259 ai~~yG~g~~~sr~------------------------------------------------------------------ 272 (430)
++++||.+.++++.
T Consensus 64 ~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g~~~~ii~~~~~~a~~~~~~~l~~~gd~vi~~~~~~~s~~~~~~~~~ 143 (393)
T TIGR01822 64 ALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLGTEDTILYASCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCK 143 (393)
T ss_pred HHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhCCCCCEEEEeccccHHHHHHHHhcC
Confidence 99999988777773
Q ss_pred ----------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCC
Q psy2206 273 ----------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGP 342 (430)
Q Consensus 273 ----------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~ 342 (430)
+++|++.+++.. . ...++++|++++++||+|.+.|+++|+++|++||++||+||+|++|++|.
T Consensus 144 ~~~~~~~~~d~~~l~~~i~~~~---~----~~~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~ 216 (393)
T TIGR01822 144 AKRYRYANNDMADLEAQLKEAR---A----AGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGP 216 (393)
T ss_pred CceEEeCCCCHHHHHHHHHhhh---h----cCCCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEECCccccCcCC
Confidence 144444444321 0 01157799999999999999999999999999999999999999999888
Q ss_pred CCCccceecCCCCCCccEEEeCccchhc-cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 343 TGRGVTEYFGIDPREVDILMGTYTKSFG-SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 343 ~GrG~~e~~g~~~~~~dIv~~TlSKa~G-~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
+|++..+..++. .++||+++||||+++ ..|||+++++++++.++....++.++++.+|..+++++++++.+++
T Consensus 217 ~~~~~~~~~~~~-~~~di~~~s~sK~l~g~r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 290 (393)
T TIGR01822 217 TGRGSHELCGVM-GRVDIITGTLGKALGGASGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEMLEA 290 (393)
T ss_pred CCCchHHhcCCC-CCCeEEEEEChHHhhCCCcEEEEeCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhc
Confidence 888876666665 357999999999996 4579999999999999876666777777788877778889887743
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.9e-25 Score=223.17 Aligned_cols=176 Identities=26% Similarity=0.457 Sum_probs=147.1
Q ss_pred cceeeecCCCccCCCCCcHHHHHHHHHHHHHh-------CCCCCCCCC--------------------------------
Q psy2206 232 STCLNLASYNYLGFGENTGLCTERSKESVKQS-------GCALCSPSA-------------------------------- 272 (430)
Q Consensus 232 ~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~y-------G~g~~~sr~-------------------------------- 272 (430)
.++|||+||||||++.+| .+++++.+++++| |++.+++|+
T Consensus 4 ~~~~~~~s~~YL~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~~l~~~sG~~ 82 (370)
T PRK05937 4 SLSIDFVTNDFLGFSRSD-TLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSGYM 82 (370)
T ss_pred CceEEeECCCccCCCCCH-HHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCeEEEECChHH
Confidence 579999999999999996 6899999999999 688999994
Q ss_pred --------------------------------------------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCC
Q psy2206 273 --------------------------------------------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSM 308 (430)
Q Consensus 273 --------------------------------------------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm 308 (430)
+++|+++|++.. ..+.++++|++++++||
T Consensus 83 a~~~~~~~~~~~~d~ii~d~~~H~sv~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~-------~~~~~~~~v~v~~v~s~ 155 (370)
T PRK05937 83 ANLGLCAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFRHNDLDHLESLLESCR-------QRSFGRIFIFVCSVYSF 155 (370)
T ss_pred HHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHHcCCceEEecCCCHHHHHHHHHhhh-------ccCCCcEEEEEecCCCC
Confidence 155666665421 00124668889999999
Q ss_pred CCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHh
Q psy2206 309 DGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRA 388 (430)
Q Consensus 309 ~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~ 388 (430)
+|++.|+++|+++|++||++|+|||||+.|.+|.+|+|++..++.. +.++++.||||++|..|+.+++.+++++.+..
T Consensus 156 ~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~--~~~~~~~tlsK~~g~~G~~vl~~~~~~~~~~~ 233 (370)
T PRK05937 156 KGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYE--NFYAVLVTYSKALGSMGAALLSSSEVKQDLML 233 (370)
T ss_pred CCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCC--CCcEEEEechhhhhcCceEEEcCHHHHHHHHH
Confidence 9999999999999999999999999999999999999987767653 34677899999999999888888888887776
Q ss_pred cCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 389 NSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 389 ~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
...++.++++.+|+.++++.++++.++++
T Consensus 234 ~~~~~~~s~~~~~~~~~a~~aal~~l~~~ 262 (370)
T PRK05937 234 NSPPLRYSTGLPPHLLISIQVAYDFLSQE 262 (370)
T ss_pred hCCCCeecCCCCHHHHHHHHHHHHHHHhC
Confidence 56678888888899888888999998654
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-24 Score=221.96 Aligned_cols=172 Identities=21% Similarity=0.423 Sum_probs=142.6
Q ss_pred cceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC-------H-------------------------------
Q psy2206 232 STCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA-------P------------------------------- 273 (430)
Q Consensus 232 ~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~-------~------------------------------- 273 (430)
+.++||+|||||||++|| ++++++.+++++||.+.+.++. .
T Consensus 54 ~~~~~~~~~~YL~l~~~p-~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~sG~~An~~~l~ 132 (407)
T PRK07179 54 PDAIILQSNDYLNLSGHP-DIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGFESCLLCQSGWAANVGLLQ 132 (407)
T ss_pred CcEEEeecCCccCCCCCH-HHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH
Confidence 789999999999999985 8999999999999876544332 1
Q ss_pred --------------------------------------HHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCH
Q psy2206 274 --------------------------------------SSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRL 315 (430)
Q Consensus 274 --------------------------------------~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L 315 (430)
++|+++|++ ..+++|++|+++||+|.+.|+
T Consensus 133 ~l~~~g~~v~~~~~~h~s~~~~~~~~g~~~~~~~~~d~~~l~~~l~~------------~~~~lV~v~~v~n~tG~i~pl 200 (407)
T PRK07179 133 TIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRHNDVDHLRRQIER------------HGPGIIVVDSVYSTTGTIAPL 200 (407)
T ss_pred HhCCCCCEEEEECCcCHHHHHHHHHCCCeEEEecCCCHHHHHHHHHh------------cCCeEEEECCCCCCCCccccH
Confidence 222222221 135689999999999999999
Q ss_pred HHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccc
Q psy2206 316 PEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSY 395 (430)
Q Consensus 316 ~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~ 395 (430)
++|+++|++||++||+||+|+.|.+|++|+|+++.+++. ..+|++++|+||++|..+|++++++++++.+.....+..+
T Consensus 201 ~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~-~~vdi~~~S~sK~~g~~~G~l~~~~~~~~~~~~~~~~~~~ 279 (407)
T PRK07179 201 ADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLT-SRVHFITASLAKAFAGRAGIITCPRELAEYVPFVSYPAIF 279 (407)
T ss_pred HHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCC-CCCCEEEeechHhhhccCeEEEeCHHHHHHHHHhCcCeee
Confidence 999999999999999999999999999999888777775 3679999999999998899999999999998876656667
Q ss_pred cCCCcHHHHHHHHHHHHHHHcc
Q psy2206 396 ATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 396 s~s~~P~~~aaalaaL~~l~~~ 417 (430)
+++.+|..++++.++++.+...
T Consensus 280 ~~t~~~~~~aa~~aal~~~~~~ 301 (407)
T PRK07179 280 SSTLLPHEIAGLEATLEVIESA 301 (407)
T ss_pred CCCCCHHHHHHHHHHHHHHhcC
Confidence 7777888888788889887554
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-24 Score=219.61 Aligned_cols=223 Identities=24% Similarity=0.360 Sum_probs=163.6
Q ss_pred HHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHHHHHhC-C
Q psy2206 187 YSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSG-C 265 (430)
Q Consensus 187 ~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG-~ 265 (430)
..+..|+|.+|||.+|+.+.|...+... ..+.+-.+.+| +++|||+|++||||..| |++++|+.+++++|| .
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~G~~~~d~~g--~~~ld~~s~~~lgl~~~-p~v~~A~~~~l~~~g~~ 79 (402)
T PRK07505 7 NNKKRINRAEKFWDAAYDEGLNGLTVGE----REGILITLADG--HTFVNFVSCSYLGLDTH-PAIIEGAVDALKRTGSL 79 (402)
T ss_pred HHHHHHHhhHHHHHHHHhcccccceeec----cCCccEEecCC--ceEEEeecCCccCCCCC-HHHHHHHHHHHHHhCCC
Confidence 4677899999999999888776643322 24445555668 88999999999999555 589999999999998 5
Q ss_pred CCCCCCC------HHHHHH----------------------HHHHHhh---c-CCCC-----------------------
Q psy2206 266 ALCSPSA------PSSLEA----------------------GLQKALL---E-GQPH----------------------- 290 (430)
Q Consensus 266 g~~~sr~------~~~Le~----------------------~L~~~~~---~-~~p~----------------------- 290 (430)
+.++++. ..+|++ +|+-... . +.+.
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~ 159 (402)
T PRK07505 80 HLSSSRTRVRSQILKDLEEALSELFGASVLTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICADET 159 (402)
T ss_pred CCCccchhhhhHHHHHHHHHHHHHhCCCEEEECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhhcCC
Confidence 5554432 111211 1110000 0 0000
Q ss_pred -----CC----------CCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCC-
Q psy2206 291 -----SG----------KPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGI- 353 (430)
Q Consensus 291 -----~~----------~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~- 353 (430)
.+ .+..+.+||+|++++ +|.+.|+++|.++|++||++||+||+|+.+.+|++|.+.. ++++.
T Consensus 160 ~v~~~~~~d~~~l~~~~~~~~~~~vl~~p~~~-~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~ 238 (402)
T PRK07505 160 EVETIDHNDLDALEDICKTNKTVAYVADGVYS-MGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYR 238 (402)
T ss_pred eEEEeCCCCHHHHHHHHhcCCCEEEEEecccc-cCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCC
Confidence 00 012356888998875 5999999999999999999999999999888899888764 56665
Q ss_pred CCCCccEEEeCccchhccccceee-cCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 354 DPREVDILMGTYTKSFGSMGGYVA-GSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 354 ~~~~~dIv~~TlSKa~G~~GG~v~-gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
.+ +.+|+++||||++|+.||+++ +++++++.++....+++|+.+++++.+++++++++++.++.
T Consensus 239 ~~-d~~i~~~s~sK~~~~~Gg~~~~~~~~~~~~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~ 303 (402)
T PRK07505 239 LN-ERTIIAASLGKAFGASGGVIMLGDAEQIELILRYAGPLAFSQSLNVAALGAILASAEIHLSEE 303 (402)
T ss_pred CC-CCeEEEEechhhhhccCeEEEeCCHHHHHHHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccC
Confidence 33 557889999999998899986 58899999988777888888888889999999998776543
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-22 Score=203.48 Aligned_cols=204 Identities=33% Similarity=0.605 Sum_probs=162.3
Q ss_pred HHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHHH
Q psy2206 181 EKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESV 260 (430)
Q Consensus 181 ~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai 260 (430)
+.++..+.+++|.+. +.+.++.|.+|+ .+ | +++|||++++|||+..++ .+++++.+++
T Consensus 3 ~~~~~~~~~~~~~~~-----~~~~~~~g~~~~-~~-------------g--~~~id~~~~~~~g~~~~~-~~~~a~~~~~ 60 (385)
T TIGR01825 3 QDLNGLKENGLYISI-----RVLESAQGPRVR-VN-------------G--KEVINLSSNNYLGFADHP-RLKEAAAQAI 60 (385)
T ss_pred hHHHHHHHcCCcccc-----cccccCCCceEE-EC-------------C--ceEEEeeccCccCCCCCH-HHHHHHHHHH
Confidence 567788888998855 678999999999 43 5 889999999999998775 7899999999
Q ss_pred HHhCCCCCCCC-------C-------------------------------------------------------------
Q psy2206 261 KQSGCALCSPS-------A------------------------------------------------------------- 272 (430)
Q Consensus 261 ~~yG~g~~~sr-------~------------------------------------------------------------- 272 (430)
++|+...+..+ +
T Consensus 61 ~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~~~~i~~~sG~~a~~~a~~~~~~~gd~vi~~~~~~~~~~~~~~~~g~~ 140 (385)
T TIGR01825 61 QQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKTEAALVFQSGFNTNQGVLSALLRKGDIVLSDELNHASIIDGLRLTKAT 140 (385)
T ss_pred HHcCCCCCccCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhCCCCCEEEEEccccHHHHHHHHhcCCc
Confidence 98876433211 1
Q ss_pred --------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCC
Q psy2206 273 --------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTG 344 (430)
Q Consensus 273 --------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~G 344 (430)
++++++.|++.. ..++++|+++++++++|.+.|+++|.++|++||+++|+||+|+.|+++.+|
T Consensus 141 ~~~~~~~d~~~l~~~l~~~~---------~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~ 211 (385)
T TIGR01825 141 KKIYKHADMDDLDRVLRENP---------SYGKKLIVTDGVFSMDGDVAPLPEIVELAERYGAVTYVDDAHGSGVMGEAG 211 (385)
T ss_pred eEEeCCCCHHHHHHHHHhhc---------cCCCeEEEEecCCcCCCCccCHHHHHHHHHHhCCEEEEECcccccCcCCCC
Confidence 134444444320 124678999999999999999999999999999999999999988888777
Q ss_pred CccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 345 RGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 345 rG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
.+.+.++++. .++||+++||||++|+.|||+++++++++.+......+.+++..+|+.++++.++++.+.+
T Consensus 212 ~~~~~~~~~~-~~~~i~~~s~sK~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 282 (385)
T TIGR01825 212 RGTVHHFGLE-DKVDIQVGTLSKAIGVVGGYAAGHKELIEYLKNRARPFLFSTAQPPAVVAALAAAVDELQR 282 (385)
T ss_pred CccHhhcCCC-cCCcEEEEeccHHhhcCCCEEecCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhc
Confidence 6666666665 4679999999999999999999999999998876555556666777777888888887754
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-22 Score=202.29 Aligned_cols=205 Identities=33% Similarity=0.513 Sum_probs=160.7
Q ss_pred HHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHHH
Q psy2206 181 EKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESV 260 (430)
Q Consensus 181 ~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai 260 (430)
..+.+....++|+.+ +++.++.|++|+. + | +++|||++|+++|+..+| .+++++.+++
T Consensus 9 ~~~~~~~~~~~~~~~-----~~~~~~~g~~~~~-~-------------g--~~~id~~~~~~~g~~~~~-~v~~a~~~~~ 66 (385)
T PRK05958 9 AALAQRRAAGLYRSL-----RPREGGAGRWLVV-D-------------G--RRMLNFASNDYLGLARHP-RLIAAAQQAA 66 (385)
T ss_pred HHHHHHHHcCCCccc-----cccccCCCceeEe-C-------------C--ceEEEeeCCCcccCCCCH-HHHHHHHHHH
Confidence 345556677899999 7899999999996 3 5 899999999999997664 7999999999
Q ss_pred HHhCCCCCCCCC--------------------------------------------------------------------
Q psy2206 261 KQSGCALCSPSA-------------------------------------------------------------------- 272 (430)
Q Consensus 261 ~~yG~g~~~sr~-------------------------------------------------------------------- 272 (430)
.+|+.+.+.++.
T Consensus 67 ~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~g~~~~~~~l~~~~~~gd~V~~~~~~~~~~~~~~~~~g~~ 146 (385)
T PRK05958 67 RRYGAGSGGSRLVTGNSPAHEALEEELAEWFGAERALLFSSGYAANLAVLTALAGKGDLIVSDKLNHASLIDGARLSRAR 146 (385)
T ss_pred HhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHhCCCCCEEEEeCccCHHHHHHHHhcCCc
Confidence 998865443331
Q ss_pred --------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCC
Q psy2206 273 --------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTG 344 (430)
Q Consensus 273 --------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~G 344 (430)
+++++++++.. +.++++|+++++++++|.+.++++|+++|++||++||+||+|+.|+++.+|
T Consensus 147 ~~~~~~~d~~~l~~~i~~~----------~~~~~lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g 216 (385)
T PRK05958 147 VRRYPHNDVDALEALLAKW----------RAGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQG 216 (385)
T ss_pred eEEeCCCCHHHHHHHHHhc----------cCCCeEEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCC
Confidence 03333333220 013678999999999999999999999999999999999999988888777
Q ss_pred CccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 345 RGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 345 rG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
.+....+++.....+|+++||||+||+.|||+++++++++.+......+.++++.+|.+++++.++|+.+...
T Consensus 217 ~~~~~~~~~~~~~~~i~~~s~sK~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~aal~~~~~~ 289 (385)
T PRK05958 217 RGLAAEAGLAGEPDVILVGTLGKALGSSGAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRRE 289 (385)
T ss_pred CchHHhhCCCCCCceEEEEechhhcccCCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhcC
Confidence 6655444443334468899999999999999999999999887655566667778888888888999887653
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-22 Score=200.13 Aligned_cols=190 Identities=38% Similarity=0.682 Sum_probs=150.3
Q ss_pred cccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC--------
Q psy2206 201 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA-------- 272 (430)
Q Consensus 201 r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~-------- 272 (430)
||+.+++|+++... | +++|||++||+||+..++ .+++++.+++++|+.+.++++.
T Consensus 1 ~~~~~~~~~~~~~~--------------g--~~~id~~~~~~~g~~~~~-~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~ 63 (360)
T TIGR00858 1 RPLDRGPGPEVVRD--------------G--RRLLNFSSNDYLGLASHP-EVIQAAQQGAEQYGAGSTASRLVSGNSPLH 63 (360)
T ss_pred CCcccCCCCeEEEC--------------C--ceEEecccCCcccCCCCH-HHHHHHHHHHHhcCCCCCCcCcccCCcHHH
Confidence 58889999999854 5 889999999999998775 7899999999998865433221
Q ss_pred --------------------------------------------------------------------HHHHHHHHHHHh
Q psy2206 273 --------------------------------------------------------------------PSSLEAGLQKAL 284 (430)
Q Consensus 273 --------------------------------------------------------------------~~~Le~~L~~~~ 284 (430)
+++|++.+++.
T Consensus 64 ~~l~~~la~~~~~~~~i~~~~G~~~~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~~~~~- 142 (360)
T TIGR00858 64 EELEEELAEWKGTEAALLFSSGYLANVGVISALVGKGDLILSDALNHASLIDGCRLSGARVRRYRHNDVEHLERLLEKN- 142 (360)
T ss_pred HHHHHHHHHHhCCCCEEEECchHHHHHHHHHHhCCCCCEEEEEccccHHHHHHHHhcCCceEEecCCCHHHHHHHHHHc-
Confidence 02333333221
Q ss_pred hcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeC
Q psy2206 285 LEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGT 364 (430)
Q Consensus 285 ~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~T 364 (430)
...++++|+++++++++|.+.|+++|+++|++||++||+||+|+.|.++..+.+....+++.+++.||+++|
T Consensus 143 --------~~~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s 214 (360)
T TIGR00858 143 --------RGERRKLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGT 214 (360)
T ss_pred --------ccCCCeEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEe
Confidence 001467999999999999999999999999999999999999998888766666666666655677999999
Q ss_pred ccchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 365 YTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 365 lSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
|||+||+.|||+++++++++.+......+.++++.++.+++++.++++.+..
T Consensus 215 ~sK~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 266 (360)
T TIGR00858 215 LSKALGSYGAYVAGSQALIDYLINRARTLIFSTALPPAVAAAALAALELIQE 266 (360)
T ss_pred chhhhhccCcEEEcCHHHHHHHHHhCccceecCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999988765555555666778877788888887754
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.1e-21 Score=193.39 Aligned_cols=211 Identities=35% Similarity=0.587 Sum_probs=161.1
Q ss_pred chhhHHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHH
Q psy2206 177 PDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERS 256 (430)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~ 256 (430)
..|-+-++.+..++++++. ..+..++|.++++.+ | +++|||++++|+|+..+ +.+++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-------------g--~~~i~l~~~~~~~~~~~-~~i~~a~ 65 (397)
T PRK06939 7 AQLREELEEIKAEGLYKEE-----RVITSPQGADITVAD-------------G--KEVINFCANNYLGLANH-PELIAAA 65 (397)
T ss_pred HHHHHHHHHHHHcCCCccc-----ccccCCCCceEEecC-------------C--CeEEEeeccCccccCCC-HHHHHHH
Confidence 3445567888888888754 356788999998754 6 88999999999999976 4789999
Q ss_pred HHHHHHhCCCCCCCCC----------------------------------------------------------------
Q psy2206 257 KESVKQSGCALCSPSA---------------------------------------------------------------- 272 (430)
Q Consensus 257 ~~ai~~yG~g~~~sr~---------------------------------------------------------------- 272 (430)
++++++++.+.++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~~~~i~~tsG~~a~~~~~~~l~~~gd~vi~~~~~~~~~~~~~~~ 145 (397)
T PRK06939 66 KAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGTEDAILYSSCFDANGGLFETLLGKEDAIISDALNHASIIDGVRL 145 (397)
T ss_pred HHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCCCcEEEEcChHHHHHHHHHHhCCCCCEEEEEhhhhHHHHHHHHh
Confidence 9999887654322211
Q ss_pred ------------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEecccccccc
Q psy2206 273 ------------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGAL 340 (430)
Q Consensus 273 ------------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~l 340 (430)
+++|++.+++... ...++++|+++++++++|.+.++++|+++|++||++||+||+|++|++
T Consensus 146 ~~~~~~~~~~~d~~~l~~~i~~~~~-------~~~~~~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~De~~~~g~~ 218 (397)
T PRK06939 146 CKAKRYRYANNDMADLEAQLKEAKE-------AGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFV 218 (397)
T ss_pred cCCceEEeCCCCHHHHHHHHHhhhc-------cCCCCeEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEECcccccCc
Confidence 1344444433210 011567899999999999999999999999999999999999988877
Q ss_pred CCCCCccceecCCCCCCccEEEeCccchh-ccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 341 GPTGRGVTEYFGIDPREVDILMGTYTKSF-GSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 341 G~~GrG~~e~~g~~~~~~dIv~~TlSKa~-G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
+..|.+....+++. .++||+++||||++ |..|||+++++++++.++.....+.++++.+|..+++++++++.+..
T Consensus 219 ~~~~~~~~~~~~~~-~~~~i~~~S~sK~~~g~r~G~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 294 (397)
T PRK06939 219 GENGRGTVEHFGVM-DRVDIITGTLGKALGGASGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELLEE 294 (397)
T ss_pred CCCCCCHHHHcCCC-CCCcEEEEECHHHhCccCceEEEeCHHHHHHHHHhCccccccCCCCHHHHHHHHHHHHHHhc
Confidence 76665555555654 35789999999999 67789999999999999876555666667777777778888888753
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.2e-21 Score=190.26 Aligned_cols=175 Identities=45% Similarity=0.759 Sum_probs=136.2
Q ss_pred cceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC---------------------------------------
Q psy2206 232 STCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA--------------------------------------- 272 (430)
Q Consensus 232 ~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~--------------------------------------- 272 (430)
+.+||||||||||+++|| +++++.++++++|+.+.++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~-~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~~~~ 79 (349)
T cd06454 1 KKVLNFCSNDYLGLANHP-EVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLS 79 (349)
T ss_pred CCceecccCCccccCCCH-HHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCCCCEEEeccHHHHHHHHHH
Confidence 468999999999999985 7999999999998754332211
Q ss_pred -------------------------------------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCH
Q psy2206 273 -------------------------------------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRL 315 (430)
Q Consensus 273 -------------------------------------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L 315 (430)
++++|+++++.. .+.++++|+++++++++|.+.|+
T Consensus 80 ~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~--------~~~~~~~v~~~~~~~~tG~~~~~ 151 (349)
T cd06454 80 TLAGKGDLIISDSLNHASIIDGIRLSGAKKRIFKHNDMEDLEKLLREAR--------RPYGKKLIVTEGVYSMDGDIAPL 151 (349)
T ss_pred HhcCCCCEEEEehhhhHHHHHHHHHcCCceEEecCCCHHHHHHHHHHhh--------ccCCCeEEEEeccccCCCCccCH
Confidence 144555554321 02356799999999999999999
Q ss_pred HHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccc
Q psy2206 316 PEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSY 395 (430)
Q Consensus 316 ~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~ 395 (430)
++|+++|++||++||+||+|+.|.++..|.++. .......+.|++++|+||++|+.||++++++++++.++.....+.+
T Consensus 152 ~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~gG~i~~~~~~~~~~~~~~~~~~~ 230 (349)
T cd06454 152 PELVDLAKKYGAILFVDEAHSVGVYGPHGRGVE-EFGGLTDDVDIIMGTLGKAFGAVGGYIAGSKELIDYLRSYARGFIF 230 (349)
T ss_pred HHHHHHHHHcCCEEEEEccccccccCCCCCChh-hhccccccCcEEEeechhhhcccCCEEECCHHHHHHHHHhchhhhc
Confidence 999999999999999999999887765554432 2222334679999999999999999999999999988876655555
Q ss_pred cCCCcHHHHHHHHHHHHHHHc
Q psy2206 396 ATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 396 s~s~~P~~~aaalaaL~~l~~ 416 (430)
+++.++..++++.++++.+.+
T Consensus 231 ~~~~~~~~~~a~~~~l~~~~~ 251 (349)
T cd06454 231 STSLPPAVAAAALAALEVLQG 251 (349)
T ss_pred cCCCCHHHHHHHHHHHHHHhc
Confidence 667888888888899988754
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.3e-20 Score=189.71 Aligned_cols=203 Identities=21% Similarity=0.202 Sum_probs=144.0
Q ss_pred cCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecC---CCccCCCCCcHHHHHHHHHHHHHh-CCCCCCCCC--
Q psy2206 199 FNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS---YNYLGFGENTGLCTERSKESVKQS-GCALCSPSA-- 272 (430)
Q Consensus 199 ~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S---~nYLGl~~~~~~v~~a~~~ai~~y-G~g~~~sr~-- 272 (430)
++..+.++.|.++++.| | +++|||+| |+|||++ | |++++|+.++++++ ..+.+.+..
T Consensus 17 ~~~~~~~~~G~~l~d~d-------------G--~~ylD~~~g~~~~~lGh~-~-p~v~~a~~~~~~~~~~~~~~~~~~~~ 79 (397)
T TIGR03246 17 APFIPVRGEGSRVWDQQ-------------G--KEYIDFAGGIAVNALGHA-H-PELVKALIEQADKLWHIGNGYTNEPV 79 (397)
T ss_pred CCceEEEeecCEEEeCC-------------C--CEEEECCcCHhhccCCCC-C-HHHHHHHHHHHHhcccccCccCCHHH
Confidence 34567899999999865 7 89999988 7999996 5 48999999999883 333221111
Q ss_pred ----------------------HHHHHHHHHHHh--------------h------c----------CCCCC---------
Q psy2206 273 ----------------------PSSLEAGLQKAL--------------L------E----------GQPHS--------- 291 (430)
Q Consensus 273 ----------------------~~~Le~~L~~~~--------------~------~----------~~p~~--------- 291 (430)
.++.|.+|+-+. + + +.+..
T Consensus 80 ~~la~~L~~~~~~~~~~f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~ 159 (397)
T TIGR03246 80 LRLAKKLVDATFADKVFFCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPG 159 (397)
T ss_pred HHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCC
Confidence 244444443210 0 0 00000
Q ss_pred ------CC---------CCceEEEEEcCccCCCCccc----CHHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eec
Q psy2206 292 ------GK---------PWRKILIVVEGIFSMDGSIV----RLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYF 351 (430)
Q Consensus 292 ------~~---------~~~~~lIi~E~v~sm~G~i~----~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~ 351 (430)
++ ..+.++||+|++++|.|.+. +|++|+++|++||++||+||+| +|+ |++|.+.. +++
T Consensus 160 ~~~~~~~~d~~~l~~~l~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~-tG~-Gr~G~~~a~~~~ 237 (397)
T TIGR03246 160 GIKHAPYNDLAAAKALISDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQ-TGV-GRTGELYAYMHY 237 (397)
T ss_pred ceEEeCCCCHHHHHHHhccCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh-hcC-Cccccchhhhhc
Confidence 00 02467999999999999664 3999999999999999999999 786 99998764 678
Q ss_pred CCCCCCccEEEeCccchhc--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 352 GIDPREVDILMGTYTKSFG--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
++.| ||+ ||||++| .+-|++++++++++.+....++. +.+.+|+.+++++++|+++++++-.+..+++.
T Consensus 238 gv~p---Di~--t~~K~lggG~pigav~~~~~i~~~~~~~~~~~--t~~~~p~~~aaa~a~l~~~~~~~l~~~~~~~~ 308 (397)
T TIGR03246 238 GVTP---DIL--TSAKALGGGFPIGAMLTTTEIAAHLKVGTHGT--TYGGNPLACAVAGKVLDLVNTPELLAGVKQRH 308 (397)
T ss_pred CCCC---CEE--EeehhhhCCcceeEEEEcHHHHHhccCCCcCC--CCCCCHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 8765 777 9999996 22367777999999887544443 33478888999999999987655444444443
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.6e-20 Score=189.09 Aligned_cols=110 Identities=21% Similarity=0.349 Sum_probs=90.0
Q ss_pred eEEEEEcCccCCCCcc---cCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchh-ccc
Q psy2206 297 KILIVVEGIFSMDGSI---VRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSF-GSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i---~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~-G~~ 372 (430)
+.+|++++ +||+|++ .+|++|+++|++||++||+||||+.|++|..|.+.+..++ .||+++||||++ |..
T Consensus 137 ~~lIiitg-~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~-----~divv~s~SKalaG~r 210 (346)
T TIGR03576 137 TSLVVITG-STMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLG-----ADLVVTSTDKLMDGPR 210 (346)
T ss_pred ceEEEEEC-CCCCCcccCHHHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHcC-----CcEEEeccchhccccc
Confidence 45666666 6999999 6899999999999999999999999887655555443332 479999999998 778
Q ss_pred cceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 373 GGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 373 GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
|||+++++++++.+++..+++.++ ++|+.+++++++|+.+
T Consensus 211 ~G~v~~~~~li~~l~~~~~~~~~s--~~~~~~~aa~~aL~~~ 250 (346)
T TIGR03576 211 GGLLAGRKELVDKIKSVGEQFGLE--AQAPLLAAVVRALEEF 250 (346)
T ss_pred eEEEEeCHHHHHHHHHhhcCcccC--ccHHHHHHHHHHHhhc
Confidence 999999999999999988887765 4566777888898764
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=192.30 Aligned_cols=126 Identities=21% Similarity=0.269 Sum_probs=100.5
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.+.||+|+|+++.|.+.| |++|++||++||++||+||+| +| ||++|.++ ++++|+.| ||+ ||+|++|
T Consensus 260 ~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~-TG-fGRtG~~~a~e~~gv~P---Div--tlgK~lg 332 (504)
T PLN02760 260 TIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVI-CA-FGRLGTMFGCDKYNIKP---DLV--SLAKALS 332 (504)
T ss_pred ceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchh-hC-CcccchhhHHHhcCCCC---cEE--Eeccccc
Confidence 4679999999999999998 999999999999999999999 34 56777655 47889876 666 9999996
Q ss_pred c---ccceeecCHHHHHHHHhcC-----CcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 371 S---MGGYVAGSKSTIDYIRANS-----HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 371 ~---~GG~v~gs~~li~~l~~~~-----~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
. +-|.+++++++++.+.... ..+.+|.+.+|+.|++++++|+++++++-.+..++..+
T Consensus 333 gG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~ 398 (504)
T PLN02760 333 SAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNIPEHVNKIAP 398 (504)
T ss_pred CCccccceEeecHHHHhhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3 5566889999999886421 12334556799999999999999988765555555443
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-19 Score=184.19 Aligned_cols=117 Identities=27% Similarity=0.364 Sum_probs=99.1
Q ss_pred CCceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccch
Q psy2206 294 PWRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKS 368 (430)
Q Consensus 294 ~~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa 368 (430)
+.+.+.||+|+|++..|.+.| |+++.++|++||+++|+||++ +| +|++|+.++ |++|+.| ||+ ||||+
T Consensus 220 ~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQ-tG-~GRTG~~fa~E~~gv~P---Div--t~aK~ 292 (447)
T COG0160 220 PEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQ-TG-FGRTGKMFAFEHFGVEP---DIV--TLAKS 292 (447)
T ss_pred CCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cC-CCccccchhhhhcCCCC---CEE--Eeccc
Confidence 457889999999999999887 999999999999999999999 46 799998776 8999976 888 99999
Q ss_pred hcc--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCc
Q psy2206 369 FGS--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENG 420 (430)
Q Consensus 369 ~G~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~ 420 (430)
+|. +-|.+++.++++++... . +.++...+|+.+++++++|++|++++-.
T Consensus 293 ig~G~Pl~avv~r~ei~~~~~g-~--~~~Tf~GNpva~Aaa~AvL~vie~e~L~ 343 (447)
T COG0160 293 LGGGLPLSAVVGRAEIMDWPPG-G--HGGTFGGNPVACAAALAVLDVIEEENLL 343 (447)
T ss_pred ccCCCceeEEeccHHhcccCCc-c--cCCCCCcCHHHHHHHHHHHHHHHHccHH
Confidence 964 44889999999994332 3 3345678999999999999999887443
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-19 Score=186.49 Aligned_cols=125 Identities=18% Similarity=0.185 Sum_probs=99.5
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCC-CccceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTG-RGVTEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~G-rG~~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|++++|.|++.| |++|+++|++||++||+||+| +|+ ++| .|..+++++.| ||+ +|||++|
T Consensus 201 ~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~-tG~--R~G~~ga~~~~gv~P---Di~--~~gK~lg 272 (433)
T PRK00615 201 RVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVV-TGF--RVAQGGAAAIYHVKP---DIT--VYGKILG 272 (433)
T ss_pred ceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccc-ccc--cccHhHHHHhcCCCC---CeE--EEccccc
Confidence 4679999999999999998 569999999999999999999 576 344 35567889875 776 7999996
Q ss_pred --cccceeecCHHHHHHHHhcCCccc-ccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 371 --SMGGYVAGSKSTIDYIRANSHVRS-YATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 371 --~~GG~v~gs~~li~~l~~~~~~~~-~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
.++|++++++++++.+......+. .|.+.+|+.+++++++|+++++++-.+.++++.+
T Consensus 273 gG~p~~av~~~~~i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~~~~~~~~~~~g~ 333 (433)
T PRK00615 273 GGLPAAAVVAHKSIMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCREQGFYTQLSTLEQ 333 (433)
T ss_pred CCcceeeeeecHHHHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 578999999999999865332222 3446799999999999999987765555555443
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-19 Score=184.25 Aligned_cols=200 Identities=18% Similarity=0.200 Sum_probs=141.6
Q ss_pred CcccccCCCCEEEEecCCCCCCCccccccCCccceeeecC---CCccCCCCCcHHHHHHHHHHHHHhCCCCCC--CC---
Q psy2206 200 NRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS---YNYLGFGENTGLCTERSKESVKQSGCALCS--PS--- 271 (430)
Q Consensus 200 ~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S---~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~--sr--- 271 (430)
+..+.++.|+++++.+ | +++|||+| |+|||++ | |.+++++++.+.+...+... ..
T Consensus 19 ~~~~~~~~G~~~~d~d-------------G--~~~lD~~sg~~~~~lGh~-~-p~v~~a~~~q~~~~~~~~~~~~~~~~~ 81 (395)
T PRK03715 19 DIVFTHGKGSWLYDHN-------------G--KRYLDFIQGWAVNCLGHC-N-PGMVEALAAQAEKLINPSPAFYNEPMA 81 (395)
T ss_pred CceEEeeecCEEEECC-------------C--CEEEECCcChhhccCCCC-C-HHHHHHHHHHHHhcccccccccCHHHH
Confidence 3467889999998765 7 89999986 9999999 4 57999999998874322211 00
Q ss_pred --------------C------HHHHHHHHHHHhh-------------------c----------CCC--------CC---
Q psy2206 272 --------------A------PSSLEAGLQKALL-------------------E----------GQP--------HS--- 291 (430)
Q Consensus 272 --------------~------~~~Le~~L~~~~~-------------------~----------~~p--------~~--- 291 (430)
. .++.|.+|+-+.. + +.+ ..
T Consensus 82 ~la~~l~~~~~~~~v~f~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~ 161 (395)
T PRK03715 82 KLAGLLTQHSCFDKVFFANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGF 161 (395)
T ss_pred HHHHHHhhccCCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCc
Confidence 0 2444444432110 0 000 00
Q ss_pred -CCC------------CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCC
Q psy2206 292 -GKP------------WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGI 353 (430)
Q Consensus 292 -~~~------------~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~ 353 (430)
+.+ .+.++||+|+++++.|.+.| |++|+++|++||++||+||+|+ | +|++|++++ +++++
T Consensus 162 ~~~~~~d~~~l~~~l~~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~t-G-~GRtG~~~a~~~~gv 239 (395)
T PRK03715 162 PKAELNDIASVEKLITDKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQT-G-CGRTGTLFAYELSGI 239 (395)
T ss_pred eeeCCchHHHHHHHcCCCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCCCcchhhHhhcCC
Confidence 000 14678999999999999988 9999999999999999999997 7 799999875 78898
Q ss_pred CCCCccEEEeCccchhcc--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 354 DPREVDILMGTYTKSFGS--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 354 ~~~~~dIv~~TlSKa~G~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
.| ||+ ||||++|. +.|+++++++++.+... . +..|.+.+|+.+++++++|+++++++-.+..++.
T Consensus 240 ~P---Di~--t~gK~lg~G~p~~av~~~~~i~~~~~~-~--~~~T~~g~pl~~aaala~L~~l~~~~l~~~~~~~ 306 (395)
T PRK03715 240 EP---DIM--TLGKGIGGGVPLAALLAKAEVAVFEAG-D--QGGTYNGNPLMTAVGVAVISQLLAPGFLEGVRAR 306 (395)
T ss_pred CC---cee--eehhhhhCCcceEEEEEccccccccCC-C--cCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 65 665 99999974 56777888888643211 1 1223367899999999999999876544444443
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-19 Score=184.22 Aligned_cols=119 Identities=23% Similarity=0.320 Sum_probs=97.6
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|+|++|.|.+.| |++|++||++||++||+||+|+ | +|++|++++ +++++.| ||+ ||||++|
T Consensus 207 ~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-G-~gr~G~~~~~~~~gv~p---Di~--t~sK~lg 279 (433)
T PRK08117 207 EVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQT-G-FGRTGEWFAAQTFGVVP---DIM--TIAKGIA 279 (433)
T ss_pred cEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-c-cCccccchhHhhcCCCC---CEe--ehhhhcc
Confidence 5679999999999999998 9999999999999999999997 7 899998875 7788765 665 9999997
Q ss_pred --cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHH
Q psy2206 371 --SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEG 423 (430)
Q Consensus 371 --~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~ 423 (430)
.+.|++++++++++.+.... +..+.+.+|+.+++++++|+++++++-.+..
T Consensus 280 ~G~pigav~~~~~i~~~~~~~~--~~~T~~~np~~~aaa~a~L~~l~~~~l~~~~ 332 (433)
T PRK08117 280 SGLPLSAVVASKELMEQWPLGS--HGTTFGGNPVACAAALATLEVIKEEKLLDNA 332 (433)
T ss_pred CCCcceeEEEcHHHHhhccCCC--CCCCCCcCHHHHHHHHHHHHHHHhccHHHHH
Confidence 33478889999998775433 3345567999999999999999765433333
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.5e-19 Score=184.06 Aligned_cols=121 Identities=25% Similarity=0.274 Sum_probs=98.2
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.+.||+|+|+++.|.+.| |++|++||++||++||+||+| +| +|++|++++ +++|+.| ||+ +|+|++|
T Consensus 222 ~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~-tG-fGRtG~~~a~e~~gv~P---Div--~~gK~lg 294 (460)
T PRK12403 222 NVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVI-GG-FGRTGEWFAHEHFGFEP---DTL--SIAKGLT 294 (460)
T ss_pred ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc-cC-CCcCchhhhhhhcCCCC---CeE--EEccccc
Confidence 4568999999999999988 999999999999999999999 35 899999876 8899876 788 7999997
Q ss_pred ---cccceeecCHHHHHHHHhcCCcc--cccCCCcHHHHHHHHHHHHHHHccCCchHH
Q psy2206 371 ---SMGGYVAGSKSTIDYIRANSHVR--SYATSMPPPVAMQILTSMRIIMGLENGDEG 423 (430)
Q Consensus 371 ---~~GG~v~gs~~li~~l~~~~~~~--~~s~s~~P~~~aaalaaL~~l~~~~~~~~~ 423 (430)
.+-|.+++++++++.+......+ ..|.+.+|+.|++++++|+++++++-.+..
T Consensus 295 gG~~Piga~v~~~~i~~~~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~~~ 352 (460)
T PRK12403 295 SGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRV 352 (460)
T ss_pred ccccceEEEEECHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHH
Confidence 23344558899999886533333 235568999999999999999877544444
|
|
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-18 Score=182.43 Aligned_cols=125 Identities=20% Similarity=0.339 Sum_probs=98.9
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|+|+++.|.+.| |++++++|++||++||+||+| +| +|++|+++ ++++|+.| ||+ ||+|++|
T Consensus 231 ~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~-tG-~GRtG~~~a~e~~gv~P---Div--t~gK~lg 303 (459)
T PRK11522 231 DVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQ-TG-MGRTGKMFACEHENVQP---DIL--CLAKALG 303 (459)
T ss_pred cEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccce-ec-CCccchhhhhhccCCCC---CEE--Eechhhh
Confidence 4679999999999999988 999999999999999999999 57 79999875 47899876 777 9999997
Q ss_pred c---ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 371 S---MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 371 ~---~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
. +-|.+++++++++.+......+..|...+|+.+++++++|+++++++-.+..++..
T Consensus 304 gG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~~l~~~~~~~g 363 (459)
T PRK11522 304 GGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKG 363 (459)
T ss_pred CCCccceeEEEcHHHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3 45666677888887643221223344459999999999999998876544444443
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-18 Score=181.26 Aligned_cols=206 Identities=19% Similarity=0.208 Sum_probs=145.3
Q ss_pred cCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCC--C------
Q psy2206 199 FNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCS--P------ 270 (430)
Q Consensus 199 ~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~--s------ 270 (430)
++.++.++.|+++++.| | +++|||+++.++.|++++|.+++|+.+++++++.+... +
T Consensus 54 ~~~~i~~a~G~~l~D~d-------------G--~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~~~~~~~~~l 118 (459)
T PRK06082 54 CLDVLASAEGIYIEDVD-------------G--KKYMDFHGNNVHQLGYGHPHVIEKVKEQMAKLPFSPRRFTNETAIEC 118 (459)
T ss_pred CCceEEeeeeeEEEECC-------------C--CEEEEcccHhhcccCCCCHHHHHHHHHHHHhCCCccCccCCHHHHHH
Confidence 35678899999998765 7 89999998888777766679999999999986543210 0
Q ss_pred -------------CC------HHHHHHHHHHHh------------------------hcCCC------------------
Q psy2206 271 -------------SA------PSSLEAGLQKAL------------------------LEGQP------------------ 289 (430)
Q Consensus 271 -------------r~------~~~Le~~L~~~~------------------------~~~~p------------------ 289 (430)
+. .++.|.+++-+. ..+.+
T Consensus 119 ae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~ 198 (459)
T PRK06082 119 AEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPP 198 (459)
T ss_pred HHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCC
Confidence 00 133333332110 00000
Q ss_pred -------CCC-----------------CCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCC
Q psy2206 290 -------HSG-----------------KPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGP 342 (430)
Q Consensus 290 -------~~~-----------------~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~ 342 (430)
..+ ...+.++||+|+|+++.+.++| |++|+++|++||++||+||+++ | +|+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~t-G-~GR 276 (459)
T PRK06082 199 AVSYRGAFPDADGSDVHYADYLEYVIEKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPN-G-MGR 276 (459)
T ss_pred CcccccccCChhHHHHHHHHHHHHHHhcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCc
Confidence 000 0124679999999999766666 9999999999999999999996 6 799
Q ss_pred CCCccc-eecCCCCCCccEEEeCccchhcc---ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 343 TGRGVT-EYFGIDPREVDILMGTYTKSFGS---MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 343 ~GrG~~-e~~g~~~~~~dIv~~TlSKa~G~---~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
+|.+++ +++|+.| ||+ +|+|++|. +-|.+++++++.+... ....+ +|.+.+|+.+++++++|+++++++
T Consensus 277 tG~~fa~e~~gv~P---Div--~~gKgl~gG~~P~~av~~~~~i~~~~~-~~~~~-~T~~gnpl~~aaa~a~L~~l~~~~ 349 (459)
T PRK06082 277 TGEWFTHQAYGIEP---DIL--CIGKGLGGGLVPIAAMITKDKYNTAAQ-ISLGH-YTHEKSPLGCAAALATIEVIEQEG 349 (459)
T ss_pred cchhhHhHhhCCCC---CEE--EecccccCCCCcceEEEEcHHHHhhcc-CCCCC-CCCCcCHHHHHHHHHHHHHHHhcC
Confidence 998865 7889876 787 79999962 4466777888765432 12222 577889999999999999998776
Q ss_pred CchHHHhhhh
Q psy2206 419 NGDEGNVRHS 428 (430)
Q Consensus 419 ~~~~~~~r~~ 428 (430)
-.+..+++.+
T Consensus 350 l~~~~~~~g~ 359 (459)
T PRK06082 350 LLEKVKADSQ 359 (459)
T ss_pred HHHHHHHHHH
Confidence 5555544443
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.5e-19 Score=180.93 Aligned_cols=203 Identities=22% Similarity=0.222 Sum_probs=142.8
Q ss_pred cCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecC---CCccCCCCCcHHHHHHHHHHHHHh-CCCCCCCCC--
Q psy2206 199 FNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS---YNYLGFGENTGLCTERSKESVKQS-GCALCSPSA-- 272 (430)
Q Consensus 199 ~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S---~nYLGl~~~~~~v~~a~~~ai~~y-G~g~~~sr~-- 272 (430)
++..+.++.|.++++.| | +++|||.| ++|||++ || .+++|+.+++.++ ..+.+....
T Consensus 21 ~~~~~~~~~G~~~~d~d-------------G--~~~lD~~~g~~~~~lGh~-~p-~v~~A~~~~~~~~~~~~~~~~~~~~ 83 (406)
T PRK12381 21 APFIPVRGEGSRLWDQQ-------------G--KEYIDFAGGIAVNALGHA-HP-ALREALNEQASKFWHTGNGYTNEPV 83 (406)
T ss_pred CCceEEEeecCEEEeCC-------------C--CEEEEcCcCHhhccCCCC-CH-HHHHHHHHHHhhcccccCccCCHHH
Confidence 44567899999999865 7 88999988 7899999 64 7899999999874 232221110
Q ss_pred ----------------------HHHHHHHHHHHhh------------------------------cCCCC----------
Q psy2206 273 ----------------------PSSLEAGLQKALL------------------------------EGQPH---------- 290 (430)
Q Consensus 273 ----------------------~~~Le~~L~~~~~------------------------------~~~p~---------- 290 (430)
.++.|.+|+-+.. .+.|.
T Consensus 84 ~~la~~l~~~~~~~~v~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~ 163 (406)
T PRK12381 84 LRLAKKLIDATFADRVFFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPP 163 (406)
T ss_pred HHHHHHHHhhCCCCeEEEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCC
Confidence 2444444432100 01110
Q ss_pred --CCCC------------CceEEEEEcCccCCCCcc----cCHHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eec
Q psy2206 291 --SGKP------------WRKILIVVEGIFSMDGSI----VRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYF 351 (430)
Q Consensus 291 --~~~~------------~~~~lIi~E~v~sm~G~i----~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~ 351 (430)
.+-+ .+.++||+|+++++.|.+ ..|++|+++|++||++||+||+| +| +|++|.+++ +++
T Consensus 164 ~~~~~~~~d~~~l~~~l~~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~-tG-~gr~G~~~~~~~~ 241 (406)
T PRK12381 164 DIRHAAYNDLNSASALIDDQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQ-TG-VGRTGELYAYMHY 241 (406)
T ss_pred CeeEeCCCCHHHHHHhccCCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchh-hC-CCCCcchhhhHhh
Confidence 0000 156789999999999955 34999999999999999999999 67 488887654 567
Q ss_pred CCCCCCccEEEeCccchhc--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 352 GIDPREVDILMGTYTKSFG--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
++.| ||+ ||||++| .+-|++++++++++.+....+. .+.+.+|+.+++++++|+++.+++-.+..+++.
T Consensus 242 ~v~p---Di~--t~sK~l~gG~~ig~~~~~~~~~~~~~~~~~~--~t~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~~ 312 (406)
T PRK12381 242 GVTP---DVL--TTAKALGGGFPIGAMLTTEKCASVMTVGTHG--TTYGGNPLASAVAGKVLELINTPEMLNGVKQRH 312 (406)
T ss_pred CCCC---CEE--EehhhhhCCCceEEEEEcHHHHhhcCCCCCC--CCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 7764 664 9999996 2237788999999988754333 344678999999999999997655444444443
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-18 Score=175.99 Aligned_cols=198 Identities=20% Similarity=0.238 Sum_probs=157.6
Q ss_pred CcccccCCCCEEEEecCCCCCCCccccccCCccceeee-cCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC------
Q psy2206 200 NRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNL-ASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA------ 272 (430)
Q Consensus 200 ~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf-~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~------ 272 (430)
|..+.++.|++|+++| | +++|+| +++--+.|+|.+|.|++|+++++++ |++.+.+..
T Consensus 36 P~fi~~g~Ga~l~DvD-------------G--n~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~-G~~fg~Pte~Ei~~A 99 (432)
T COG0001 36 PIFIERGKGAYLTDVD-------------G--NEYIDYVLGWGPLILGHAHPAVVEAVQEQLER-GLSFGAPTELEVELA 99 (432)
T ss_pred CeeEEeccCCeEEeCC-------------C--CEeeehhccCcccccCCCCHHHHHHHHHHHHh-cCCCCCCCHHHHHHH
Confidence 4557899999999876 7 889999 4777788888888999999999987 776666554
Q ss_pred --------------------------------------------------------------------------------
Q psy2206 273 -------------------------------------------------------------------------------- 272 (430)
Q Consensus 273 -------------------------------------------------------------------------------- 272 (430)
T Consensus 100 ell~~~~p~~e~vrfvnSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~t 179 (432)
T COG0001 100 ELLIERVPSIEKVRFVNSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHT 179 (432)
T ss_pred HHHHHhcCcccEEEEecchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccE
Confidence
Q ss_pred -------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccC
Q psy2206 273 -------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALG 341 (430)
Q Consensus 273 -------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG 341 (430)
+++|++++++. +++.+.||+|++-++.|.|.| |++|++||++||++||+||++. |+-.
T Consensus 180 i~~~yND~~al~~~~~~~----------g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViT-GFR~ 248 (432)
T COG0001 180 LVLPYNDLEALEEAFEEY----------GDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVIT-GFRV 248 (432)
T ss_pred EEecCCCHHHHHHHHHHc----------CCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchh-hccc
Confidence 26677777663 346889999999999999988 9999999999999999999984 5422
Q ss_pred CCCCccceecCCCCCCccEEEeCccchhc--cccceeecCHHHHHHHHhcCCccc-ccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 342 PTGRGVTEYFGIDPREVDILMGTYTKSFG--SMGGYVAGSKSTIDYIRANSHVRS-YATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 342 ~~GrG~~e~~g~~~~~~dIv~~TlSKa~G--~~GG~v~gs~~li~~l~~~~~~~~-~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
. -.|..+++|+.| |+. ||+|.+| ++-|++.|++++++.+.....-|. -|.+.+|+.++|.+++|+.+++++
T Consensus 249 ~-~gGaq~~~gi~P---Dlt--tlGKiIGGGlP~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~~~ 322 (432)
T COG0001 249 A-LGGAQGYYGVEP---DLT--TLGKIIGGGLPIGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMTEE 322 (432)
T ss_pred C-CcccccccCcCc---chh--hhhhhhcCCcceeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHhcc
Confidence 2 136778999987 666 9999995 566888999999998876553332 356779999999999999999865
Q ss_pred C-chHHHhhhhcC
Q psy2206 419 N-GDEGNVRHSSI 430 (430)
Q Consensus 419 ~-~~~~~~r~~~L 430 (430)
+ ++++.+..++|
T Consensus 323 ~~y~~l~~~~~~L 335 (432)
T COG0001 323 GVYERLDALGERL 335 (432)
T ss_pred cHHHHHHHHHHHH
Confidence 4 77777766654
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-18 Score=176.56 Aligned_cols=114 Identities=21% Similarity=0.277 Sum_probs=91.5
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|++++|+|.+.| |++|+++|++||+++|+||+| +| +|++|++++ +++++.| ||+ +|||+++
T Consensus 186 ~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~-~g-~g~~G~~~~~~~~~~~~---di~--~~gK~l~ 258 (401)
T TIGR01885 186 NVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQ-TG-LGRTGKLLCVDHENVKP---DIV--LLGKALS 258 (401)
T ss_pred CEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechh-hC-CCccchhhHHhhcCCCC---CEE--Eeecccc
Confidence 4678999999999999998 999999999999999999999 57 788888764 4556543 666 7899997
Q ss_pred ccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 371 SMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 371 ~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
..+ |++++++++++.++.....+ +.+.+|+.+++++++|+++++++
T Consensus 259 ~g~~~ig~v~~~~~i~~~~~~~~~~~--t~~~~p~~~~aa~a~L~~i~~~~ 307 (401)
T TIGR01885 259 GGVYPVSAVLADDDVMLTIKPGEHGS--TYGGNPLACAVAVAALEVLEEEK 307 (401)
T ss_pred CCCCCcEEEEEcHHHHhhccCCCCCC--CCCCCHHHHHHHHHHHHHHHhcc
Confidence 422 56889999999887644333 33467888999999999997653
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.1e-18 Score=178.34 Aligned_cols=123 Identities=23% Similarity=0.361 Sum_probs=98.5
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|+|+++.|.+.| |++|+++|++||+++|+||+| +| +|++|.++ ++++|+.| ||+ ||+|++|
T Consensus 224 ~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~-tG-~GRtG~~~a~e~~gv~P---Div--t~gK~lg 296 (442)
T TIGR03372 224 DVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQ-TG-MGRTGKMFACEHEGVQP---DIL--CLAKALG 296 (442)
T ss_pred cEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecc-cC-CCccccchhhhhcCCCC---Cee--eehhhhc
Confidence 5689999999999999998 999999999999999999999 57 79999875 47889876 777 8999997
Q ss_pred ---cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHh
Q psy2206 371 ---SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNV 425 (430)
Q Consensus 371 ---~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~ 425 (430)
.+.|.+++++++++.+......+..|.+.+|+.+++++++|+++++++-.+..++
T Consensus 297 ~G~~Pigavv~~~~i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~~l~~~~~~ 354 (442)
T TIGR03372 297 GGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAI 354 (442)
T ss_pred CCcccceEEEecHHHHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 3456677889999887432212223445599999999999999987764444333
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.3e-18 Score=178.01 Aligned_cols=119 Identities=23% Similarity=0.271 Sum_probs=98.0
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|+|+++.|.+.| |++|+++|++||++||+||+|+ | ||++|.++ ++++|+.| ||+ ||+|++|
T Consensus 214 ~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~t-G-fGRtG~~~a~~~~gv~P---Di~--t~gK~lg 286 (451)
T PRK06062 214 TIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMA-G-FGRTGKWFAIEHFGVVP---DLI--TFAKGVN 286 (451)
T ss_pred ceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeecccc-C-CCcCcHHHHHHhcCCCC---Cee--eechhhh
Confidence 4689999999999999998 9999999999999999999995 6 79999875 47899876 666 9999997
Q ss_pred c---ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCch
Q psy2206 371 S---MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGD 421 (430)
Q Consensus 371 ~---~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~ 421 (430)
. +-|.+++++++++.+......+.+|.+.+|+.+++++++|+++++++-.+
T Consensus 287 gG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~ 340 (451)
T PRK06062 287 SGYVPLGGVAISEAIAATFADRPYPGGLTYSGHPLACAAAVATINAMEEEGIVE 340 (451)
T ss_pred cCCcCcEEEEEcHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHH
Confidence 3 45667788899998864322233456678999999999999998876444
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-18 Score=175.53 Aligned_cols=197 Identities=20% Similarity=0.237 Sum_probs=139.1
Q ss_pred CcccccCCCCEEEEecCCCCCCCccccccCCccceeeecC---CCccCCCCCcHHHHHHHHHHHHHhCCCCCC-------
Q psy2206 200 NRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS---YNYLGFGENTGLCTERSKESVKQSGCALCS------- 269 (430)
Q Consensus 200 ~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S---~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~------- 269 (430)
+.++.++.|.++++.+ | +++|+|+| +++||.. | |.+.+++.+++++++.....
T Consensus 26 ~~~~~~~~G~~~~d~d-------------g--~~~lD~~s~~~~~~lG~~-~-p~v~~ai~~~~~~~~~~~~~~~~~~~~ 88 (398)
T PRK03244 26 PLALVRGEGAVVWDVD-------------G--KEYLDLLGGIAVNALGHA-H-PAVVEAVTRQLATLGHVSNLFATEPQI 88 (398)
T ss_pred CceEEEeeecEEEECC-------------C--CEEEECCcCHhhccCCCC-C-HHHHHHHHHHHHhccCccCccCCHHHH
Confidence 4567888999999765 7 88999988 8999984 5 58899999999987643210
Q ss_pred ------------C---CC------HHHHHHHHHHHh-------h------cCC---------------------CCCC--
Q psy2206 270 ------------P---SA------PSSLEAGLQKAL-------L------EGQ---------------------PHSG-- 292 (430)
Q Consensus 270 ------------s---r~------~~~Le~~L~~~~-------~------~~~---------------------p~~~-- 292 (430)
. +. .+.++.+++-.. + +|. ++..
T Consensus 89 ~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (398)
T PRK03244 89 ALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLTGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHV 168 (398)
T ss_pred HHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHHHCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEe
Confidence 0 00 133333332100 0 000 0000
Q ss_pred --C---------CCceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCC
Q psy2206 293 --K---------PWRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPR 356 (430)
Q Consensus 293 --~---------~~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~ 356 (430)
. ..+.++|++|++++|+|.+.| +++|+++|++||++||+||+|+ | +|++|.+++ +++++.|
T Consensus 169 ~~~d~~~l~~~~~~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g-~gr~g~~~~~~~~~~~p- 245 (398)
T PRK03244 169 PYGDVDALAAAVDDDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQT-G-IGRTGAWFAHQHDGVTP- 245 (398)
T ss_pred CCCCHHHHHHhhcCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C-CcccchHHhhhhhCCCC-
Confidence 0 024678999999999999988 9999999999999999999996 5 788887643 5567654
Q ss_pred CccEEEeCccchhcc--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchH
Q psy2206 357 EVDILMGTYTKSFGS--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDE 422 (430)
Q Consensus 357 ~~dIv~~TlSKa~G~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~ 422 (430)
||+ ||||++|. +-|++++++++++.+....+. .+.+.+|+.+++++++|+++.+++-.+.
T Consensus 246 --Di~--t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~--~t~~~~~~~~aaa~a~l~~~~~~~~~~~ 307 (398)
T PRK03244 246 --DVV--TLAKGLGGGLPIGACLAFGPAADLLTPGLHG--STFGGNPVACAAALAVLDTIASEGLLEN 307 (398)
T ss_pred --CEE--EEchhhhCCcccEEEEEcHHHHhhccCCCCc--CCCCCCHHHHHHHHHHHHHHHhccHHHH
Confidence 665 99999972 338888889999988654333 3446789999999999998876543333
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.4e-18 Score=178.02 Aligned_cols=124 Identities=20% Similarity=0.247 Sum_probs=96.0
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~ 371 (430)
+.++||+|++++|+|.+.| |++|++||++||+++|+||+|+ |+ .-.+.+..+++++.| ||+ ||||+++.
T Consensus 197 ~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-G~-r~g~~~~~~~~~~~p---Di~--~~gK~l~~ 269 (426)
T PRK00062 197 EIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMT-GF-RVALGGAQGYYGVTP---DLT--TLGKIIGG 269 (426)
T ss_pred cEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechh-cc-ccCCccHHHHhCCCc---chH--hhhhHhhC
Confidence 5679999999999999998 9999999999999999999996 65 222244556778765 554 99999974
Q ss_pred --ccceeecCHHHHHHHHhcCCcccc-cCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 372 --MGGYVAGSKSTIDYIRANSHVRSY-ATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 372 --~GG~v~gs~~li~~l~~~~~~~~~-s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
+.|++++++++++.++.....+.+ +.+.+|+.+++++++|+++++++-.+..++.
T Consensus 270 G~p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~~~~~~~~~~ 327 (426)
T PRK00062 270 GLPVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEPGFYEELEAL 327 (426)
T ss_pred CCcceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 457788999999998753333333 3478999999999999999776444444333
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-18 Score=173.53 Aligned_cols=203 Identities=26% Similarity=0.294 Sum_probs=139.7
Q ss_pred cCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCC---ccCCCCCcHHHHHHHHHHHHHhCCCC-CC-CCC-
Q psy2206 199 FNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYN---YLGFGENTGLCTERSKESVKQSGCAL-CS-PSA- 272 (430)
Q Consensus 199 ~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~n---YLGl~~~~~~v~~a~~~ai~~yG~g~-~~-sr~- 272 (430)
++.++.++.|++++..+ | +++|||+||+ |||+ .| |.+++++.+++++++..+ .. ...
T Consensus 11 ~~~~~~~~~G~~~~d~~-------------G--~~~lD~~s~~~~~~lG~-~~-p~v~~a~~~~~~~~~~~~~~~~~~~~ 73 (377)
T PRK02936 11 FPIDIVKGKGTKVTDNN-------------G--KTYLDFTSGIAVCNLGH-CH-PTVTKAVQEQLDDIWHVSNLFTNSLQ 73 (377)
T ss_pred CCceEEEeecCEEEeCC-------------C--CEEEECCcchhhccCCC-CC-HHHHHHHHHHHHhccccccccCCHHH
Confidence 34678899999998765 7 8999999998 9997 34 578999999998753211 10 000
Q ss_pred ----------------------HHHHHHHHHHH--------h------hc----------CCCC------------CCCC
Q psy2206 273 ----------------------PSSLEAGLQKA--------L------LE----------GQPH------------SGKP 294 (430)
Q Consensus 273 ----------------------~~~Le~~L~~~--------~------~~----------~~p~------------~~~~ 294 (430)
.+..+.+++-. . .+ +.+. ...+
T Consensus 74 ~~la~~l~~~~~~~~~~~~~sG~~a~~~A~~~a~~~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (377)
T PRK02936 74 EEVASLLAENSAGDLVFFCNSGAEANEAALKLARKHTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVP 153 (377)
T ss_pred HHHHHHHHhcCCCCEEEEeCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeC
Confidence 12233332210 0 00 0000 0000
Q ss_pred ------------CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCC
Q psy2206 295 ------------WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPRE 357 (430)
Q Consensus 295 ------------~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~ 357 (430)
.+.++||+|+++++.|.+.+ |++|+++|++||+++|+||+| .| +|.+|+++. +++++.|
T Consensus 154 ~~d~~~l~~~~~~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~-~g-~g~~g~~~~~~~~~~~~-- 229 (377)
T PRK02936 154 FNDIKALKEVMNEEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQ-TG-IGRTGTLFAYEQFGLDP-- 229 (377)
T ss_pred CCCHHHHHHhccCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccc-cC-CCcCchhhHHHhhCCCC--
Confidence 14679999999999887653 999999999999999999999 46 688887653 5666654
Q ss_pred ccEEEeCccchhcc--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 358 VDILMGTYTKSFGS--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 358 ~dIv~~TlSKa~G~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
||+ ||||+++. ++|++++++++++.+....+. .+.+.+|+.+++++++|+.+..++..++.+++.
T Consensus 230 -di~--t~sK~l~~G~~ig~v~~~~~~~~~~~~~~~~--~t~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~ 296 (377)
T PRK02936 230 -DIV--TVAKGLGNGIPVGAMIGKKELGTAFGPGSHG--STFGGNPLAMAAAKEVLQVIKQPSFLEEVQEKG 296 (377)
T ss_pred -cEE--EEcccccCCCccEEEEEcHHHHhhccCCCCC--CCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 655 89999973 458999999999988654333 344579999999999999986554444444443
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6e-18 Score=177.98 Aligned_cols=125 Identities=27% Similarity=0.312 Sum_probs=101.5
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.+.||+|+|+++.|.+.| |++|++||++||++||+||++ +| +|++|.+++ +++++.| ||+ ||||++|
T Consensus 218 ~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~-tG-~GRtG~~f~~~~~~v~P---Di~--~~gK~lg 290 (460)
T PRK06105 218 TIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVI-CG-FGRTGNMFGCETFGIKP---DIL--VMSKQLS 290 (460)
T ss_pred ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccc-cC-CCcCchhhhHHhcCCCC---Cee--eeecccc
Confidence 4689999999999999887 999999999999999999999 34 677777654 7788876 777 9999996
Q ss_pred ---cccceeecCHHHHHHHHhcCC-----cccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 371 ---SMGGYVAGSKSTIDYIRANSH-----VRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 371 ---~~GG~v~gs~~li~~l~~~~~-----~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
.+.|++++++++++.+..... .+.+|.+.+|+.+++++++|+++++++-.+..++..
T Consensus 291 gG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g 355 (460)
T PRK06105 291 SSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDLVGNAAERG 355 (460)
T ss_pred cCcccceEEEEcHHHHHHHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 367889999999998875321 144677899999999999999998876554444443
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.4e-18 Score=172.78 Aligned_cols=122 Identities=24% Similarity=0.331 Sum_probs=99.7
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+++.||+|+|....|.+.| |+++++||++||++||+||++ +| +|++|.-++ +++|+.| ||+ |++|++|
T Consensus 184 ~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQ-tG-~GRTGk~fA~e~~gV~P---DI~--tlaK~Lg 256 (404)
T COG4992 184 DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQ-TG-LGRTGKLFAYEHYGVEP---DIL--TLAKALG 256 (404)
T ss_pred CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccc-cC-CCccchHHHHHHhCCCC---CEE--Eeecccc
Confidence 6889999999999888776 999999999999999999999 57 799999875 8999987 788 9999996
Q ss_pred --cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 371 --SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 371 --~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
.|-|++++++.+.+.+....++. |...+|+.||++.++|+++.+++-.+..+++
T Consensus 257 GG~PigA~la~~~~~~~~~~G~HgS--TfGGNpLacAv~~a~l~~l~~e~ll~~v~~~ 312 (404)
T COG4992 257 GGFPIGAMLATEEIASAFTPGDHGS--TFGGNPLACAVALAVLEVLLEEGLLENVREK 312 (404)
T ss_pred CCccceeeEEchhhhhcCCCCcccC--CCCcCHHHHHHHHHHHHHHcchhHHHHHHHH
Confidence 34356666666667666555553 4457999999999999999888665555544
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.4e-18 Score=174.83 Aligned_cols=204 Identities=21% Similarity=0.196 Sum_probs=140.5
Q ss_pred ccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCC---CccCCCCCcHHHHHHHHHHHHHhCC-CCC-CCCC
Q psy2206 198 CFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASY---NYLGFGENTGLCTERSKESVKQSGC-ALC-SPSA 272 (430)
Q Consensus 198 ~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~---nYLGl~~~~~~v~~a~~~ai~~yG~-g~~-~sr~ 272 (430)
.++..+.++.|+++++.| | +++|||+|+ +|||+ .| |.+++++.+++++++. +.. ....
T Consensus 21 ~~~~~~~~~~G~~~~d~d-------------G--~~~iD~~~~~~~~~lGh-~~-p~v~~a~~~~~~~~~~~~~~~~~~~ 83 (403)
T PRK05093 21 PAEFIPVRGEGSRVWDQQ-------------G--KEYIDFAGGIAVTALGH-CH-PALVKALKEQGEKLWHISNVFTNEP 83 (403)
T ss_pred CCCeeEEEeecCEEEeCC-------------C--CEEEEcCcCHHhccCCC-CC-HHHHHHHHHHHHhcCcccCccCCHH
Confidence 455677889999999765 7 889999885 99999 45 4789999999987432 211 1110
Q ss_pred -----------------------HHHHHHHHHHH--------------h------hcCC------------------CC-
Q psy2206 273 -----------------------PSSLEAGLQKA--------------L------LEGQ------------------PH- 290 (430)
Q Consensus 273 -----------------------~~~Le~~L~~~--------------~------~~~~------------------p~- 290 (430)
.++.|.+++-+ . .+|. |.
T Consensus 84 ~~~l~~~l~~~~~~~~~~~~~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~ 163 (403)
T PRK05093 84 ALRLAKKLIDATFAERVFFANSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKP 163 (403)
T ss_pred HHHHHHHHHhhCCCCEEEEeCchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCC
Confidence 13333333210 0 0000 00
Q ss_pred ---CCC------------CCceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-ee
Q psy2206 291 ---SGK------------PWRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EY 350 (430)
Q Consensus 291 ---~~~------------~~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~ 350 (430)
.+- ..++++||+|+++++.|.+.| +++|+++|++||+++|+||+|+ | +|.+|++.. ++
T Consensus 164 ~~~~~~~~~d~~~l~~~l~~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g-~g~~g~~~~~~~ 241 (403)
T PRK05093 164 ADITHVPFNDLAAVKAVIDDHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQT-G-MGRTGDLFAYMH 241 (403)
T ss_pred CCcEEeCCCCHHHHHHHhcCCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCCCccchhhhh
Confidence 000 014679999999999998755 9999999999999999999997 6 677776543 45
Q ss_pred cCCCCCCccEEEeCccchhc--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 351 FGIDPREVDILMGTYTKSFG--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 351 ~g~~~~~~dIv~~TlSKa~G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
+++.| || .||||+++ .+.|++++++++++.+....+. .+.+.+|+.+++++++|+.+.+++-..+.+++.
T Consensus 242 ~~~~p---di--~s~sK~l~~G~rig~vv~~~~i~~~l~~~~~~--~t~~~~~~~~~aa~a~L~~~~~~~~~~~~~~~~ 313 (403)
T PRK05093 242 YGVTP---DI--LTSAKALGGGFPIGAMLTTAEIASHFKVGTHG--STYGGNPLACAVAEAVFDIINTPEVLEGVKARR 313 (403)
T ss_pred cCCCC---CE--EEecccccCCcceEEEEEcHHHHhhcCCCCCC--CCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 66654 54 49999997 2338899999999988754333 244578888999999999986554444444443
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.77 E-value=8e-18 Score=177.55 Aligned_cols=126 Identities=20% Similarity=0.269 Sum_probs=97.5
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCC-ccceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR-GVTEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr-G~~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|+|+++.|.+.| |++|++||++||++||+||+| +|+ ++|. |..+++|+.| ||+ ||+|++|
T Consensus 246 ~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~-tGf--R~g~~ga~~~~gv~P---Di~--t~gK~lg 317 (474)
T PLN02482 246 EIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVM-TGF--RIAYGGAQEYFGITP---DLT--TLGKVIG 317 (474)
T ss_pred ceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cCe--ecCcchHhHHhCCCC---CEE--Eecchhh
Confidence 5679999999999999987 778999999999999999999 686 3343 4457889876 675 9999997
Q ss_pred c--ccceeecCHHHHHHHHhcCCcc-cccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhhc
Q psy2206 371 S--MGGYVAGSKSTIDYIRANSHVR-SYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHSS 429 (430)
Q Consensus 371 ~--~GG~v~gs~~li~~l~~~~~~~-~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~~ 429 (430)
. +-|.+++++++++.+......+ ..|.+.+|+.+++++++|+++++++-.+.+.++.++
T Consensus 318 gG~Pigav~g~~ei~~~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~~~~~~~~~~~g~~ 379 (474)
T PLN02482 318 GGLPVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQPGTYEYLDKITKK 379 (474)
T ss_pred CCCceEEEEEcHHHHHhhccCCCcccccCcchhHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3 3356689999999986432222 234457899999999999999877666555555443
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-17 Score=171.90 Aligned_cols=123 Identities=26% Similarity=0.341 Sum_probs=93.5
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|++++|+|.+.| +++|+++|++||++||+||+|+ | +|+.|.+. .+++++.| |++ ||||+++
T Consensus 191 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~-g-~g~~g~~~~~~~~~~~~---d~~--t~sK~l~ 263 (413)
T cd00610 191 EVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQT-G-FGRTGKMFAFEHFGVEP---DIV--TLGKGLG 263 (413)
T ss_pred CEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCcCcchhhHhhcCCCC---CeE--EEccccc
Confidence 5679999999999999887 9999999999999999999997 4 56666653 35666543 554 9999997
Q ss_pred c--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHh
Q psy2206 371 S--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNV 425 (430)
Q Consensus 371 ~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~ 425 (430)
. +.|++++++++++.+......+..+.+.+|+.++++.++|+++++++-.+.+++
T Consensus 264 ~g~~~g~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~~ 320 (413)
T cd00610 264 GGLPLGAVLGREEIMDAFPAGPGLHGGTFGGNPLACAAALAVLEVLEEEGLLENAAE 320 (413)
T ss_pred CccccEEEEEcHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 5 237788899999987222223334666788889999999999977543333333
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.9e-18 Score=171.78 Aligned_cols=193 Identities=21% Similarity=0.232 Sum_probs=135.7
Q ss_pred CcccccCCCCEEEEecCCCCCCCccccccCCccceeeecC---CCccCCCCCcHHHHHHHHHHHHHh-CCCCCC-CCC--
Q psy2206 200 NRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS---YNYLGFGENTGLCTERSKESVKQS-GCALCS-PSA-- 272 (430)
Q Consensus 200 ~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S---~nYLGl~~~~~~v~~a~~~ai~~y-G~g~~~-sr~-- 272 (430)
+..+.++.|+++++.| | +++|||+| +++||+. | |.+++|+.+++++. ..+... ...
T Consensus 14 ~~~~~~~~G~~~~d~d-------------G--~~~lD~~~g~~~~~lGh~-~-p~v~~a~~~~~~~~~~~~~~~~~~~~~ 76 (389)
T PRK01278 14 DLAFERGEGVWLIDED-------------G--ERYLDFASGIAVNSLGHA-H-PHLVEALKEQAEKLWHVSNLYRIPEQE 76 (389)
T ss_pred CceEEeeecCEEEECC-------------C--CEEEECCccHhhccCCCC-C-HHHHHHHHHHHHhcCccccccCChHHH
Confidence 4567899999998765 7 89999988 7899994 5 47899999999873 222110 000
Q ss_pred ---------------------HHHHHHHHHHHh-------------h-----------------cCCCCCC---------
Q psy2206 273 ---------------------PSSLEAGLQKAL-------------L-----------------EGQPHSG--------- 292 (430)
Q Consensus 273 ---------------------~~~Le~~L~~~~-------------~-----------------~~~p~~~--------- 292 (430)
.++++.+++-.. + .+.+...
T Consensus 77 ~la~~l~~~~~~~~v~~~~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~ 156 (389)
T PRK01278 77 RLAERLVENSFADKVFFTNSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPG 156 (389)
T ss_pred HHHHHHHhhCCCCEEEEcCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCCCC
Confidence 244444432210 0 0000000
Q ss_pred ---C--C----------CceEEEEEcCccCCCCccc----CHHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecC
Q psy2206 293 ---K--P----------WRKILIVVEGIFSMDGSIV----RLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFG 352 (430)
Q Consensus 293 ---~--~----------~~~~lIi~E~v~sm~G~i~----~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g 352 (430)
- + .++++||+|++++++|.+. .|++|+++|++||++||+||+|+ | +|++|.++. ++++
T Consensus 157 ~~~~~~~d~~~l~~~l~~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g-~g~~g~~~~~~~~~ 234 (389)
T PRK01278 157 FDQVPFGDIEALKAAITPNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQC-G-MGRTGKLFAHEWAG 234 (389)
T ss_pred ceEeCCCCHHHHHHhhCCCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCcCCcceeecccC
Confidence 0 0 1467999999999999554 49999999999999999999996 6 677777554 5667
Q ss_pred CCCCCccEEEeCccchhc--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 353 IDPREVDILMGTYTKSFG--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
+.| |++ ||||+++ .+.|++++++++++.+....+. .+.+.+|+.+++++++|+++++++
T Consensus 235 ~~p---di~--t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~--~t~~~~~~~~aaa~a~l~~l~~~~ 295 (389)
T PRK01278 235 VTP---DIM--AVAKGIGGGFPLGACLATEEAAKGMTPGTHG--STYGGNPLAMAVGNAVLDVILAPG 295 (389)
T ss_pred CCC---CEE--EEehhccCCcceEEEEEcHHHHhccCCCCCC--CCCCccHHHHHHHHHHHHHHhhhH
Confidence 654 554 9999996 2458889999999888664444 344578999999999999986543
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-17 Score=173.49 Aligned_cols=124 Identities=22% Similarity=0.285 Sum_probs=97.8
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|+|+++.|.+.| |++|+++|++||++||+||+|+ | +|++|.++ .+++++.| ||+ ||||++|
T Consensus 215 ~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~t-G-~GrtG~~~a~~~~gv~P---Div--t~gK~l~ 287 (442)
T PRK13360 215 TIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVIT-G-FGRLGAPFAAQYFGVTP---DLL--TCAKGLT 287 (442)
T ss_pred cEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCCCccchhhhhcCCCC---cee--eeeeccc
Confidence 4679999999999999998 9999999999999999999994 5 48888776 47888876 777 9999996
Q ss_pred ---cccceeecCHHHHHHHHhcCC-----cccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 371 ---SMGGYVAGSKSTIDYIRANSH-----VRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 371 ---~~GG~v~gs~~li~~l~~~~~-----~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
.+-|.+++++++++.+..... .+.+|.+.+|+.+++++++|+++++++-.+..++.
T Consensus 288 gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~~~~~~~ 351 (442)
T PRK13360 288 NGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLTRAARL 351 (442)
T ss_pred cCccceEEEEEcHHHHHHhhcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344567789999988764211 12245567999999999999999877543444333
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-17 Score=174.06 Aligned_cols=125 Identities=18% Similarity=0.206 Sum_probs=95.9
Q ss_pred ceEEEEEcCccCCCCccc-----CHHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEGIFSMDGSIV-----RLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~-----~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~ 369 (430)
+..+||+|++++++|.+. .|++|+++|++||++||+||+| +| +|++|.+++ +++|+.| ||+ ||+|++
T Consensus 204 ~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~-tG-~GrtG~~fa~~~~gv~P---Di~--t~gK~l 276 (428)
T PRK07986 204 EIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIA-TG-FGRTGKLFACEHAGIAP---DIL--CLGKAL 276 (428)
T ss_pred cEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cC-CccCCCeeeecccCCCC---CEE--Eechhh
Confidence 467899999977776642 2999999999999999999999 78 599998864 7889876 787 899999
Q ss_pred c---cccceeecCHHHHHHHHhcCC---cccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 370 G---SMGGYVAGSKSTIDYIRANSH---VRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 370 G---~~GG~v~gs~~li~~l~~~~~---~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
| .+.|.+++++++++.+..... .+..|.+.+|+.+++++++|+++++++-.+..+++.
T Consensus 277 ~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g 340 (428)
T PRK07986 277 TGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIE 340 (428)
T ss_pred hCCcccCcchhchHHHHHHhhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 6 233445788999999875320 122344578999999999999998775444444443
|
|
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=172.76 Aligned_cols=125 Identities=15% Similarity=0.169 Sum_probs=97.7
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCc-cceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRG-VTEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG-~~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|+++++.|.+.| |++|+++|++||++||+||+|+ |+ ++|.+ ..+++|+.| ||+ ||+|++|
T Consensus 200 ~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~t-G~--Rt~~~~a~~~~gv~P---Div--t~gK~lg 271 (428)
T PRK12389 200 EVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVIT-AF--RFMYGGAQDLLGVEP---DLT--ALGKIIG 271 (428)
T ss_pred cEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEcccc-cc--ccCcchhhHHhCCCC---Cee--eechhhc
Confidence 4678999999999999998 9999999999999999999994 53 45544 456789876 776 9999996
Q ss_pred c--ccceeecCHHHHHHHHhcCCccc-ccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 371 S--MGGYVAGSKSTIDYIRANSHVRS-YATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 371 ~--~GG~v~gs~~li~~l~~~~~~~~-~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
. +-|.+++++++++.+......+. .|.+.+|+.+++++++|+++++++-.+..++..+
T Consensus 272 gG~Pi~av~~~~~i~~~~~~~~~~~~~~T~~gnpl~~Aaala~L~~l~~~~l~~~~~~~g~ 332 (428)
T PRK12389 272 GGLPIGAYGGRKDIMEQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLGA 332 (428)
T ss_pred CCCceeEEeEHHHHHhhhccCCCcccccCCccCHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3 34666889999998864222222 3557899999999999999988765555555443
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-17 Score=173.58 Aligned_cols=125 Identities=18% Similarity=0.216 Sum_probs=97.0
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc--cc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS--MG 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~--~G 373 (430)
+.++||+|++++|.++..+|++|+++|++||++||+||+| +|+ +.++.|..+++++.| ||+ ||+|++|. ++
T Consensus 187 ~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~-tG~-~~~~~g~~~~~gv~P---Di~--t~gK~lggG~p~ 259 (431)
T PRK06209 187 RIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMI-TGF-RWHMRGAQKLYGIVP---DLS--CFGKALGNGFAV 259 (431)
T ss_pred CEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEccc-ccC-CcCcchhhHHhCCCc---cee--eehhhhcCCccc
Confidence 4679999999999877778999999999999999999999 785 445556666788865 665 99999974 78
Q ss_pred ceeecCHHHHHH--HHh--cCCcccc--cCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 374 GYVAGSKSTIDY--IRA--NSHVRSY--ATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 374 G~v~gs~~li~~--l~~--~~~~~~~--s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
|++++++++++. +.. ....+++ +.+.+|+.+++++++|+++++++..+...++.
T Consensus 260 ~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~i~~~~~~~~~~~~g 319 (431)
T PRK06209 260 SALAGKREYMELGGLEHTDRERVFLLSTTHGAETHALAAAIATMAIYRDEDVIERLHEQG 319 (431)
T ss_pred EEEEEHHHHHhhhcccccCCCCceeeccCCCCCHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999987 321 1233333 33457899999999999998775455454443
|
|
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-17 Score=172.13 Aligned_cols=127 Identities=20% Similarity=0.226 Sum_probs=100.0
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
...++||+|+|+++.|.+.| |++|+++|++||++||+||+|. | +|++|.++ .+++++.| ||+ ||||++
T Consensus 220 ~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~t-G-fGR~G~~~a~~~~gv~P---Div--t~gK~l 292 (460)
T PRK06541 220 DTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVIC-A-FGRLGEMFGCERFGYVP---DII--TCAKGI 292 (460)
T ss_pred CCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCcCchhhhhhhcCCCC---CEE--Eecccc
Confidence 35789999999999999998 9999999999999999999993 4 46777764 46788865 777 899999
Q ss_pred cc---ccceeecCHHHHHHHHhcCCc--ccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 370 GS---MGGYVAGSKSTIDYIRANSHV--RSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 370 G~---~GG~v~gs~~li~~l~~~~~~--~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
|. +-|++++++++++.+...... +.+|.+.+|+.+++++++|+++++++-.+..+++.+
T Consensus 293 ~~G~~pigav~~~~~i~~~~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~~~~~~~~~~~g~ 356 (460)
T PRK06541 293 TSGYSPLGAMIASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFEREGLLDHVRDNEP 356 (460)
T ss_pred cCCccceeEEEEcHHHHHHhhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 72 456777889998877643222 234777899999999999999987765555554443
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-17 Score=171.76 Aligned_cols=125 Identities=20% Similarity=0.208 Sum_probs=95.0
Q ss_pred ceEEEEEcCccCCCCc-----ccCHHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEGIFSMDGS-----IVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~-----i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
+.++||+|+|++++|. ..+|++|+++|++||++||+||+| +| +|++|+++ .+++++.| ||+ ++||++
T Consensus 207 ~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~-tG-~Gr~G~~~~~~~~~v~p---Di~--~~gK~l 279 (427)
T TIGR00508 207 EIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIA-TG-FGRTGKLFACEHAGVVP---DIL--CVGKAL 279 (427)
T ss_pred cEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cC-CCcCCccchhhhcCCCC---CEE--Eechhh
Confidence 4568999999888773 345999999999999999999999 78 69999885 46888865 777 699999
Q ss_pred c---cccceeecCHHHHHHHHhcCC-c--ccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 370 G---SMGGYVAGSKSTIDYIRANSH-V--RSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 370 G---~~GG~v~gs~~li~~l~~~~~-~--~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
+ .+.+.+++++++++.++.... . +..|...+|+.+++++++|+++++++-.+..+++.
T Consensus 280 ~gG~~p~~a~~~~~~~~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~ 343 (427)
T TIGR00508 280 TGGYMTLSATVTTDKVAQTISSGEAGCFMHGPTFMGNPLACAVAEASLAILLEGEWQKQVSAIE 343 (427)
T ss_pred hcCcccceEEEEcHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 5 133456778899999875321 1 22244578999999999999998775544444443
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.1e-17 Score=169.67 Aligned_cols=114 Identities=19% Similarity=0.314 Sum_probs=91.6
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|+|++++|.+.| |++|.++|++||++||+||+|+ | +|++|.++. +++++.| ||+ +|||++|
T Consensus 224 ~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~t-G-~GrtG~~~a~~~~~i~p---Div--~lsK~lg 296 (474)
T PLN02624 224 RIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQT-G-LARTGKMLACDWEEVRP---DVV--ILGKALG 296 (474)
T ss_pred CEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C-cCcCcchhhHHhcCCCC---CEE--Eeccccc
Confidence 5678999999999999988 9999999999999999999995 6 788888765 4566644 666 7899997
Q ss_pred cc---cceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 371 SM---GGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 371 ~~---GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
.. .|++++++++++.+...... .+.+.+|+.+++++++|+++++++
T Consensus 297 gG~~pigav~~~~~i~~~~~~~~~~--~T~~g~pl~~aaa~aaLe~l~~~~ 345 (474)
T PLN02624 297 GGVIPVSAVLADKDVMLCIKPGEHG--STFGGNPLASAVAMAALQVVQDEK 345 (474)
T ss_pred CCCCcceeeeecHHHHhHhccCCcC--CCCCCCHHHHHHHHHHHHHHHhch
Confidence 43 37788888888877543322 233578999999999999987653
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-17 Score=171.30 Aligned_cols=123 Identities=20% Similarity=0.299 Sum_probs=101.6
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.+.++||+|+++++.|.+.| |++|+++|++||++||+||+|+ | +|++|.++ ++++++.| ||+ ||||++
T Consensus 206 ~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~t-g-~GrtG~~~a~~~~gv~p---Di~--t~gK~l 278 (445)
T PRK08593 206 DEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQ-G-LGRTGKWSSISHFNITP---DLM--SFGKSL 278 (445)
T ss_pred CceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCcCchHHHHHhcCCCC---CEe--eecccc
Confidence 35789999999999999877 9999999999999999999985 4 68888764 47888876 666 999999
Q ss_pred c--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 370 G--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 370 G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
| .++|++++++++++.+.. ..+.+|.+.+|+.+++++++|+++++++-.+..++.
T Consensus 279 ~~G~p~gav~~~~~i~~~~~~--~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~ 335 (445)
T PRK08593 279 AGGMPMSAIVGRKEIMESLEA--PAHLFTTGANPVSCAAALATIDMIEDESLLQRSAEK 335 (445)
T ss_pred cCCcccEEEEEcHHHHhhhcc--CCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 6 467889999999998853 235568889999999999999999877554444444
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.7e-17 Score=169.97 Aligned_cols=123 Identities=24% Similarity=0.328 Sum_probs=98.5
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|+|+++.|.+.| |++|+++|++||++||+||+|+ | +|++|.++ .+++++.| ||+ +|||+++
T Consensus 218 ~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~t-G-~GRtG~~~~~~~~gv~P---Di~--~~gK~l~ 290 (445)
T PRK09221 218 TIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVIT-G-FGRLGAAFAAERFGVTP---DII--TFAKGLT 290 (445)
T ss_pred cEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhh-C-CCcCchhhHHHhcCCCC---CEE--Eeccccc
Confidence 4679999999999999998 9999999999999999999995 6 78999886 47888876 676 9999995
Q ss_pred ---cccceeecCHHHHHHHHhcC-----CcccccCCCcHHHHHHHHHHHHHHHccCCchHHHh
Q psy2206 371 ---SMGGYVAGSKSTIDYIRANS-----HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNV 425 (430)
Q Consensus 371 ---~~GG~v~gs~~li~~l~~~~-----~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~ 425 (430)
.+.|.+++++++++.+.... ..+.+|.+.+|+.+++++++|+++++++-.+..++
T Consensus 291 gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~~l~~~~~~ 353 (445)
T PRK09221 291 NGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREEDLFERAAE 353 (445)
T ss_pred cCcccceeeEEcHHHHHhhccCcccccccccccCCCcCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 34677888999998875311 01224556799999999999999987754443333
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.6e-17 Score=166.20 Aligned_cols=203 Identities=17% Similarity=0.204 Sum_probs=140.0
Q ss_pred cCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccC--CCCCcHHHHHHHHHHHHHhCCCCCCCCC----
Q psy2206 199 FNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLG--FGENTGLCTERSKESVKQSGCALCSPSA---- 272 (430)
Q Consensus 199 ~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLG--l~~~~~~v~~a~~~ai~~yG~g~~~sr~---- 272 (430)
++.++.++.|.++++.+ | +++|+|+|+ |++ +++.+|.+++++++++++++.+....+.
T Consensus 23 ~~~~~~~~~G~~~~d~~-------------g--~~~lD~~~~-~~~~~~Gh~~~~i~~a~~~~~~~~~~~~~~~~~~~~~ 86 (401)
T PRK00854 23 LDVVLTRGEGVWVWDTD-------------G--NRYLDCLSA-YSAVNQGHCHPKILAAMVEQAGRLTLTSRAFRNDQLA 86 (401)
T ss_pred CCceEEeeeeCEEEECC-------------C--CEEEEcCcc-hhhccCCCCCHHHHHHHHHHHhhccccccccCCHHHH
Confidence 44677889999998765 6 889998664 643 3444568999999999998764422222
Q ss_pred ---------------------HHHHHHHHHHHhh----------------------cC----------CCCCC-------
Q psy2206 273 ---------------------PSSLEAGLQKALL----------------------EG----------QPHSG------- 292 (430)
Q Consensus 273 ---------------------~~~Le~~L~~~~~----------------------~~----------~p~~~------- 292 (430)
.+++|.+|+-... +| .|.+.
T Consensus 87 ~l~~~l~~~~~~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~ 166 (401)
T PRK00854 87 PLYEELAALTGSHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFT 166 (401)
T ss_pred HHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCC
Confidence 2444444432100 00 01000
Q ss_pred --------C---------CCceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-ee
Q psy2206 293 --------K---------PWRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EY 350 (430)
Q Consensus 293 --------~---------~~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~ 350 (430)
. ..++++||+|++++|+|.+.| |++|+++|++||++||+||+|+ | +|.+|.++. ++
T Consensus 167 ~~~~~~~~~d~~~le~~i~~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~-g-~g~~g~~~~~~~ 244 (401)
T PRK00854 167 PGFRVVPFGDAEALEAAITPNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQT-G-LGRTGKLLAEEH 244 (401)
T ss_pred CCeEEeCCCCHHHHHHHhCCCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCCCchHhHHhh
Confidence 0 025689999999999999997 9999999999999999999996 6 577776554 35
Q ss_pred cCCCCCCccEEEeCccchhc---cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 351 FGIDPREVDILMGTYTKSFG---SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 351 ~g~~~~~~dIv~~TlSKa~G---~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
+++.+ |++ ++||+++ .+.|++++++++++.++...+...| +.+|+.+++++++|+.+.+++..+..+++
T Consensus 245 ~g~~~---D~~--~~~K~l~gg~~~ig~v~~~~~~~~~l~~~~~~~t~--~~~~~~~aa~~a~L~~l~~~~~~~~~~~~ 316 (401)
T PRK00854 245 EGIEA---DVT--LIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTF--GGNPLACAVARAALKVLTEEGMIENAAEM 316 (401)
T ss_pred cCCCC---CEE--EecccccCCccCeEEEEEcHHHHhcccCCCCCCCC--CcCHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 66654 666 5689985 2457789999999988754433333 46899999999999998765443443333
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.5e-17 Score=165.25 Aligned_cols=114 Identities=19% Similarity=0.281 Sum_probs=91.9
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++||+|++++++|.+.| |++|+++|++||++||+||+|+ | +|++|..++ ++.++.| ||+ +|||++|
T Consensus 186 ~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g-~g~~g~~~~~~~~~~~p---di~--~~sK~lg 258 (396)
T PRK04073 186 NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQT-G-LGRTGKLFACDWDNVTP---DMY--ILGKALG 258 (396)
T ss_pred CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-C-CCcCcHHHHhhhcCCCC---CEE--Eeccccc
Confidence 5678999999999999887 8999999999999999999996 5 677776554 4556544 666 7999998
Q ss_pred ccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 371 SMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 371 ~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
+.| |++++++++++.+...... .+.+.+|+.+++++++|+++++++
T Consensus 259 ~gg~~ig~~~~~~~i~~~~~~~~~~--~t~~~~~~~~aaa~aaL~~~~~~~ 307 (396)
T PRK04073 259 GGVFPISCVAANRDILGVFTPGSHG--STFGGNPLACAVSIAALEVLEEEK 307 (396)
T ss_pred CCCCcceEEEEcHHHHhhhcCCCCC--CCCCCCHHHHHHHHHHHHHHHhcC
Confidence 654 8999999999988653333 344578899999999999987654
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=166.50 Aligned_cols=125 Identities=18% Similarity=0.183 Sum_probs=97.1
Q ss_pred ceEEEEEcCc-cCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEGI-FSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~v-~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
+.+.||+|++ .+..|.+.| |++|++||++||++||+||+| +| +|++|+++ .+++++.| ||+ +|+|++
T Consensus 206 ~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~-tG-~GrtG~~~a~~~~gv~P---Div--~~gK~l 278 (429)
T PRK06173 206 EIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIA-TG-FGRTGKLFALEHAGVVP---DIM--CIGKAL 278 (429)
T ss_pred cEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchh-cC-CCcCCcchHHHhcCCCC---CEE--Eeehhh
Confidence 5678999997 888887754 999999999999999999999 88 69999987 57889875 777 699999
Q ss_pred c---cccceeecCHHHHHHHHhc-CCccc--ccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 370 G---SMGGYVAGSKSTIDYIRAN-SHVRS--YATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 370 G---~~GG~v~gs~~li~~l~~~-~~~~~--~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
+ .+.+.+++++++++.+... ...+. .|.+.+|+.|++++++|+++++++-.+..+++.
T Consensus 279 ~gG~~p~~a~~~~~~i~~~~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~~~~g 342 (429)
T PRK06173 279 TGGYLTLSATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRIE 342 (429)
T ss_pred hCCccccceEEecHHHHHHHhcCCCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 5 1345566788899988642 11222 244689999999999999998775544444443
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-16 Score=165.62 Aligned_cols=125 Identities=18% Similarity=0.141 Sum_probs=98.8
Q ss_pred ceEEEEEcCc-cCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEGI-FSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~v-~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~ 369 (430)
+.+.||+|++ .+..|.+.| |++|+++|++||++||+||+| +|+ |++|.+++ +++++.| ||+ ||+|++
T Consensus 200 ~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~-tG~-GrtG~~~a~~~~gv~P---Di~--t~gK~l 272 (422)
T PRK05630 200 TVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIA-TGF-GRTGELFATLAAGVTP---DIM--CVGKAL 272 (422)
T ss_pred ceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecce-eCC-CcCchhhHHHhcCCCC---Cee--eeechh
Confidence 4678999996 887776554 999999999999999999999 785 99998775 7788876 787 999999
Q ss_pred c---cccceeecCHHHHHHHHhcC----CcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 370 G---SMGGYVAGSKSTIDYIRANS----HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 370 G---~~GG~v~gs~~li~~l~~~~----~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
+ +++|++++++++++.+.... ..+..|...+|+.+++++++|+++++++-.+..++..
T Consensus 273 ~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~~g 337 (422)
T PRK05630 273 TGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKRIE 337 (422)
T ss_pred hcCccccceeeccHHHHHHHhccCCCCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 3 46888999999999886421 1123455689999999999999998775444444443
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-16 Score=161.95 Aligned_cols=114 Identities=25% Similarity=0.351 Sum_probs=90.3
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++|++|++++++|.+.| +++|+++|++||++||+||+|+ | +|.+|.++. +.+++.| |++ +|||+++
T Consensus 178 ~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~-g-~g~~G~~~~~~~~~~~p---d~~--~~sK~l~ 250 (400)
T PTZ00125 178 NVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQT-G-LGRTGKLLAHDHEGVKP---DIV--LLGKALS 250 (400)
T ss_pred CeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCccchhhHHHhcCCCC---CEE--EEccccc
Confidence 5678999999999999998 9999999999999999999994 5 677777644 4556543 666 7899997
Q ss_pred cc---cceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 371 SM---GGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 371 ~~---GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
.. -|++++++++++.+....... +.+.+|+.+++++++|+.+++++
T Consensus 251 ~g~~~ig~v~~~~~~~~~~~~~~~~~--t~~~~~~~~~aa~~~l~~i~~~~ 299 (400)
T PTZ00125 251 GGLYPISAVLANDDVMLVIKPGEHGS--TYGGNPLACAVAVEALEVLKEEK 299 (400)
T ss_pred CCCcCcEEEEEcHHHHhhccCCCCCC--CCCcCHHHHHHHHHHHHHHHhcC
Confidence 42 378999999999886533332 33568888899999999987653
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-16 Score=165.34 Aligned_cols=126 Identities=18% Similarity=0.207 Sum_probs=98.0
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhc-
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG- 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G- 370 (430)
+.+.||+|++.++.|.+.| |++|+++|++||++||+||+++++ +|.. |..+++|+.| ||+ ||+|++|
T Consensus 218 ~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr-~g~G--g~~~~~gv~P---Di~--t~gK~lgg 289 (453)
T PRK07046 218 DVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTIS-SGPG--GYTRAHGLEP---DFL--VVGKPIAG 289 (453)
T ss_pred CeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCc-cCCc--chhHHhCCCc---cce--eehhhhcC
Confidence 5678999999999998887 999999999999999999999733 2321 3457789876 777 8999996
Q ss_pred -cccceeecCHHHHHHHHhcC------C-cccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhhc
Q psy2206 371 -SMGGYVAGSKSTIDYIRANS------H-VRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHSS 429 (430)
Q Consensus 371 -~~GG~v~gs~~li~~l~~~~------~-~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~~ 429 (430)
.+-|++++++++++.+.... . .+..|.+.+|+.+++++++|+++++++..+..+++.++
T Consensus 290 G~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g~~ 356 (453)
T PRK07046 290 GVPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMTEAAYAHMLALAAR 356 (453)
T ss_pred CCcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 45577889999999886421 1 12235578999999999999999887666665555443
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-16 Score=179.23 Aligned_cols=121 Identities=18% Similarity=0.212 Sum_probs=98.2
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCc--cceecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRG--VTEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG--~~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
+.++||+|+|+++.|.+.| |++|+++|++||+++|+||+| +| +|++|.. ..+++|+.| ||+ ||+|++
T Consensus 744 ~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~-tG-fGRtG~~~~a~e~~gv~P---Div--t~gK~l 816 (972)
T PRK06149 744 GLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQ-VG-YGRLGHYFWGFEQQGVVP---DII--TMAKGM 816 (972)
T ss_pred ceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeeh-hc-CCccCccchhhhhcCCCC---CEE--Eecccc
Confidence 4678999999999999998 999999999999999999999 35 5777763 247789875 787 999999
Q ss_pred c--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHH
Q psy2206 370 G--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGN 424 (430)
Q Consensus 370 G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~ 424 (430)
| .+.|++++++++++.+.... .+..|++.+|+.|++++++|+++++++-.+..+
T Consensus 817 g~G~Pl~av~~~~~i~~~~~~~~-~~~sT~~gnP~~~aaala~L~~i~~e~l~~~~~ 872 (972)
T PRK06149 817 GNGHPLGAVITRREIAEALEAEG-YFFSSTGGSPVSCRIGMAVLDVLREEKLQENAR 872 (972)
T ss_pred cCCeeeEEEEEcHHHHhhhccCC-cccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 6 35588889999999887522 223356789999999999999998875444443
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-16 Score=163.52 Aligned_cols=122 Identities=22% Similarity=0.303 Sum_probs=93.0
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCC-CccceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTG-RGVTEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~G-rG~~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|++++++|.+.| +++|+++|++||++||+||+|+ |+ .+| .+..+++++.| ||+ ||||++|
T Consensus 195 ~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g~--r~g~~~~~~~~~~~p---Di~--t~sK~l~ 266 (423)
T TIGR00713 195 EIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMT-GF--RVALGGAQEYFGVEP---DLT--TLGKIIG 266 (423)
T ss_pred cEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc-cc--ccCcchhHHHhCCCc---chh--hhhhhhc
Confidence 4679999999999998887 8999999999999999999994 54 223 23346677765 665 8999997
Q ss_pred --cccceeecCHHHHHHHHhcCCccc-ccCCCcHHHHHHHHHHHHHHHccCCchHHHh
Q psy2206 371 --SMGGYVAGSKSTIDYIRANSHVRS-YATSMPPPVAMQILTSMRIIMGLENGDEGNV 425 (430)
Q Consensus 371 --~~GG~v~gs~~li~~l~~~~~~~~-~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~ 425 (430)
.+.|++++++++++.+......+. .+.+.+|+.+++++++|+.+++++-.+..++
T Consensus 267 ~G~pig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~ 324 (423)
T TIGR00713 267 GGLPVGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDE 324 (423)
T ss_pred CCCceeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 345999999999999875322222 3446899999999999999987643333333
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.9e-16 Score=164.91 Aligned_cols=124 Identities=19% Similarity=0.243 Sum_probs=98.6
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.+.||+|+|.+..|.+.| |++|+++|++||++||+||++ +| ||++|..+ ++++|+.| ||+ ||+|++|
T Consensus 213 ~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~-tG-fGRtG~~~~~~~~gv~P---Div--t~gK~lg 285 (451)
T PRK07678 213 TIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVI-CG-FGRTGKAFGFMNYGVKP---DII--TMAKGIT 285 (451)
T ss_pred ceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehh-hc-CCcCchhHHHHhcCCCC---CEE--Eeecccc
Confidence 5789999999999888876 999999999999999999998 35 67887643 47789876 787 9999996
Q ss_pred ---cccceeecCHHHHHHHHhcC----CcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 371 ---SMGGYVAGSKSTIDYIRANS----HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 371 ---~~GG~v~gs~~li~~l~~~~----~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
.+-|.+++++++++.+.... ..+..|.+.+|+.|++++++|+++++++-.+..++.
T Consensus 286 gG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~ 348 (451)
T PRK07678 286 SAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENENLIERSAQL 348 (451)
T ss_pred cCCcceeEEEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 24466788999999886422 123457778999999999999999887654444443
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=161.64 Aligned_cols=203 Identities=16% Similarity=0.158 Sum_probs=141.6
Q ss_pred CcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCC-CccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC------
Q psy2206 200 NRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASY-NYLGFGENTGLCTERSKESVKQSGCALCSPSA------ 272 (430)
Q Consensus 200 ~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~-nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~------ 272 (430)
+.++..+.|+++++.+ | +++|||.|+ .|++|++| |.+++++.+++++++........
T Consensus 12 ~~~~~~~~G~~l~d~d-------------g--~~~lD~~s~~~~~~lG~~-p~v~~a~~~~~~~~~~~~~~~~~~~~~~l 75 (375)
T PRK04260 12 AIEFVKAEGNYLIDTD-------------G--KKYLDFSSGIGVTNLGFH-PQVQQALQKQAGLIWHSPNLYLNSLQEEV 75 (375)
T ss_pred CceEEEeeeCEEEeCC-------------C--CEEEECCCCcccccCCCC-HHHHHHHHHHHHhcCcccCccCCHHHHHH
Confidence 3567889999998865 7 889999886 68999996 57999999999875432111000
Q ss_pred ------------------HHHHHHHHHHH--------h------hcC----------CCC--------------C-CC--
Q psy2206 273 ------------------PSSLEAGLQKA--------L------LEG----------QPH--------------S-GK-- 293 (430)
Q Consensus 273 ------------------~~~Le~~L~~~--------~------~~~----------~p~--------------~-~~-- 293 (430)
.+..+.+++-. . .+| .+. . +.
T Consensus 76 a~~l~~~~~~~~~~~~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl 155 (375)
T PRK04260 76 AQKLIGDKDYLAFFCNSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDL 155 (375)
T ss_pred HHHHhcCcCCEEEEcCccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCH
Confidence 13333222210 0 000 000 0 00
Q ss_pred -------CCceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEE
Q psy2206 294 -------PWRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDIL 361 (430)
Q Consensus 294 -------~~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv 361 (430)
+.+.++|++|++.+++|.+.+ |++|.++|++||+++|+||+|+ | +|++|.++. +.+++.| ||+
T Consensus 156 ~~l~~~l~~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~-g-~g~~g~~~~~~~~~~~p---di~ 230 (375)
T PRK04260 156 NSVKALVNKNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQT-G-MGRTGKLYAFEHYGIEP---DIF 230 (375)
T ss_pred HHHHHhcCCCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCcccchhhhHhhCCCC---CEE
Confidence 124579999999999999876 9999999999999999999995 6 688887644 5677765 555
Q ss_pred EeCccchhc--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 362 MGTYTKSFG--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 362 ~~TlSKa~G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
||||+++ .+.|++++++++++.+.... +..+...+|+.+++++++|+.++.++-.++.+++.
T Consensus 231 --t~sK~l~~G~~ig~~~~~~~~~~~~~~~~--~~~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~ 294 (375)
T PRK04260 231 --TLAKGLANGVPVGAMLAKSSLGGAFGYGS--HGSTFGGNKLSMAAASATLDIMLTAGFLEQALENG 294 (375)
T ss_pred --EecccccCCcceEEEEEcHHHHhhcCCCC--CCCCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999996 35699999999998876432 23345568889999999999987654444444443
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.8e-16 Score=164.22 Aligned_cols=121 Identities=27% Similarity=0.359 Sum_probs=96.8
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.+.||+|+|.+..|.+.| |++|++||++||++||+||+++ | +|++|.+++ +++|+.| ||+ +|+|++|
T Consensus 219 ~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~t-G-fGRtG~~~a~~~~gv~P---Div--~~gK~l~ 291 (456)
T PRK07480 219 NVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVIC-G-FGRTGEWFGSQHFGIKP---DLM--TIAKGLT 291 (456)
T ss_pred cEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCcCcchhhhhhcCCCC---Cee--eeehhhc
Confidence 4678999999999998876 9999999999999999999984 5 689998754 7889876 777 9999996
Q ss_pred c---ccceeecCHHHHHHHHhc-C-CcccccCCCcHHHHHHHHHHHHHHHccCCchHH
Q psy2206 371 S---MGGYVAGSKSTIDYIRAN-S-HVRSYATSMPPPVAMQILTSMRIIMGLENGDEG 423 (430)
Q Consensus 371 ~---~GG~v~gs~~li~~l~~~-~-~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~ 423 (430)
. +-|.+++++++++.+... . ..+..|.+.+|+.|++++++|+++++++-.+..
T Consensus 292 gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~ 349 (456)
T PRK07480 292 SGYIPMGAVGVGDRVAEVLIEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVERV 349 (456)
T ss_pred cCCccceEEEEcHHHHHHHhcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 2 446677889999988421 1 123346678999999999999999887654444
|
|
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.6e-16 Score=163.15 Aligned_cols=126 Identities=20% Similarity=0.257 Sum_probs=99.0
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.+.||+|+|.+..|.+.| |++|++||++||++||+||++ +| ||++|.+++ +++|+.| ||+ +++|++|
T Consensus 220 ~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~-tG-fGRtG~~~a~~~~gv~P---Div--~~gKgl~ 292 (461)
T PRK07482 220 TIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVV-TG-FGRLGSMFGSDHYGIEP---DLI--TVAKGLT 292 (461)
T ss_pred cEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccc-cC-CCcCcchhhHHhcCCCC---CEE--EEccccc
Confidence 4689999999988888765 999999999999999999998 56 789998764 7889876 788 8999996
Q ss_pred c---ccceeecCHHHHHHHHhc-----CCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 371 S---MGGYVAGSKSTIDYIRAN-----SHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 371 ~---~GG~v~gs~~li~~l~~~-----~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
. +-|.+++++++++.+... ...+..|...+|+.|++++++|+++++++-.+..++..+
T Consensus 293 gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~ 358 (461)
T PRK07482 293 SAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERENLVGNAAEVGA 358 (461)
T ss_pred cCccccceeeecHHHHHHHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2 335567788898877632 112334667899999999999999988765555544433
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.4e-16 Score=162.93 Aligned_cols=126 Identities=18% Similarity=0.231 Sum_probs=98.5
Q ss_pred ceEEEEEcC-ccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEG-IFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~-v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~ 369 (430)
+.+.||+|+ |.+..|.+.| |++|+++|++||++||+||++ +| +|++|..++ +++|+.| ||+ ||+|++
T Consensus 221 ~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~-TG-~GRtG~~fa~~~~gv~P---Div--t~gKgl 293 (453)
T PRK06943 221 KIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIA-VG-CGRTGTFFACEQAGVWP---DFL--CLSKGI 293 (453)
T ss_pred ceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechh-hC-CCCCcchhHHHhCCCCC---CeE--eeehhh
Confidence 567899999 4888887665 999999999999999999998 46 689998765 7889876 788 999999
Q ss_pred c---cccceeecCHHHHHHHHhcC----CcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 370 G---SMGGYVAGSKSTIDYIRANS----HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 370 G---~~GG~v~gs~~li~~l~~~~----~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
| .+-|.+++++++++.+.... ..+..|.+.+|+.|++++++|+++++++-.+..+++.+
T Consensus 294 ~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~ 359 (453)
T PRK06943 294 SGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDVLARNARKSA 359 (453)
T ss_pred ccCcccceEEEEcHHHHHhhcccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 6 24566788999998875311 11233556799999999999999988865555554443
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.1e-16 Score=163.37 Aligned_cols=125 Identities=23% Similarity=0.189 Sum_probs=99.5
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.+.||+|+|.+..|.+.| |++|+++|++||++||+||+. +| +|++|.+++ +++|+.| ||+ +|+|++|
T Consensus 215 ~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~-tG-fGRtG~~~a~~~~gv~P---Div--~~gKgl~ 287 (459)
T PRK05965 215 NVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVI-TG-FGRTGPLFACEAEGVVP---DLM--TVAKGLT 287 (459)
T ss_pred ceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechh-cc-CccCchhhhHhhcCCCC---CeE--Eechhhc
Confidence 4688999999998888765 999999999999999999998 46 788988764 7889876 788 9999996
Q ss_pred ---cccceeecCHHHHHHHHhc-----CCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 371 ---SMGGYVAGSKSTIDYIRAN-----SHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 371 ---~~GG~v~gs~~li~~l~~~-----~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
.+-|.+++++++++.+... ...+..|.+.+|+.|++++++|+++++++-.+..++..
T Consensus 288 gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g 352 (459)
T PRK05965 288 SGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLANGQKAG 352 (459)
T ss_pred cCCcceeEEEEcHHHHHHHhccccccccccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 2446678899999887532 11233466789999999999999998886555444443
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.8e-16 Score=162.88 Aligned_cols=122 Identities=21% Similarity=0.279 Sum_probs=99.6
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.+.+.||+|+|.+..|.+.| |++|+++|++||++||+||+|+ | +|++|.+++ +++++.| ||+ +|+|++
T Consensus 221 ~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G-~GrtG~~~a~~~~gv~P---Div--~~gK~l 293 (457)
T PRK05639 221 DEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQT-G-IGRTGKWFASEWFEVKP---DLI--IFGKGV 293 (457)
T ss_pred CceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-c-cCcCchHHHHHhcCCCC---CEE--Eechhh
Confidence 45789999999998888765 9999999999999999999996 7 899998754 7889865 788 699999
Q ss_pred c--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 370 G--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 370 G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
| .+-|++++++++++.. ...+.+|.+.+|+.+++++++|+++++++-.+..++.
T Consensus 294 ~gG~pi~av~~~~~i~~~~---~~~~~~T~~g~p~~~aaa~a~l~~l~~~~l~~~~~~~ 349 (457)
T PRK05639 294 ASGMGLSGVIGRKELMDLT---SGSALLTPAANPVISAAAEATLEIIEEENLLKNALKV 349 (457)
T ss_pred cCCCcceeEEehHHHHhhc---CCCcccCCCcCHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 6 3447888999999832 2234567789999999999999999887655544443
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.8e-16 Score=160.67 Aligned_cols=125 Identities=20% Similarity=0.250 Sum_probs=97.8
Q ss_pred CceEEEEEcCccCCCCcc-cC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSI-VR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i-~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.+.++||+|+++++.|.. .| |++|+++|++||++||+||+|+ | +|++|.+++ +++++.| ||+ ||||++
T Consensus 197 ~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-g-~gr~g~~~~~~~~~~~p---Div--~~sK~l 269 (421)
T PRK06777 197 DQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQT-G-FARTGKLFAMEYYDVKP---DLI--TMAKSL 269 (421)
T ss_pred CceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-C-CccCCchhhhhhcCCCC---CEE--eeehhh
Confidence 356899999999999964 44 9999999999999999999996 6 688887543 6777754 666 899999
Q ss_pred c--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 370 G--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 370 G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
| .+.|++++++++++.+..... ..+.+.+|+.+++++++|+++++++-.++.+++.+
T Consensus 270 ~~G~pigav~~~~~i~~~~~~~~~--~~T~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~ 328 (421)
T PRK06777 270 GGGMPISAVVGRAEVMDAPAPGGL--GGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGA 328 (421)
T ss_pred cCCCceEEEEEcHHHHhccCCCCC--CCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 7 234789999999998865433 34556799999999999999987655555554443
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.9e-16 Score=162.13 Aligned_cols=123 Identities=27% Similarity=0.342 Sum_probs=97.8
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.+.++||+|+++++.|.+.| |++|+++|++||+++|+||+|+ | +|++|.++ .+++++.| ||+ ||||++
T Consensus 220 ~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~t-G-~gr~G~~~a~~~~gv~p---Div--t~~K~l 292 (441)
T PRK05769 220 EEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQT-G-MGRTGKMFAIEHFGVEP---DII--TLAKAI 292 (441)
T ss_pred CceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCcccceehhhccCCCC---CEE--EEcccc
Confidence 35789999999999999998 9999999999999999999996 6 78888875 47788865 777 899999
Q ss_pred c--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 370 G--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 370 G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
| .+.|++++++++++.+. ..+. .+.+.+|+.+++++++|+++++ +-.+..+++.+
T Consensus 293 ~~G~p~gav~~~~~i~~~~~-~~~~--~T~~g~p~~~aaa~a~L~~l~~-~~~~~~~~~g~ 349 (441)
T PRK05769 293 AGGLPLGAVIGRAELMFLPP-GSHA--NTFGGNPVAAAAALATLEELEE-GLLENAQKLGE 349 (441)
T ss_pred cCCcccEEEEEehhhhhcCC-CCCC--CCCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 7 34588899999886543 2223 3445689999999999999977 54455544433
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-15 Score=160.90 Aligned_cols=127 Identities=24% Similarity=0.296 Sum_probs=99.2
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-e-ecCCCCCCccEEEeCccch
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-E-YFGIDPREVDILMGTYTKS 368 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e-~~g~~~~~~dIv~~TlSKa 368 (430)
.+.+.||+|+|.++.|.+.| |++|+++|++||+++|+||++ +| +|++|..++ + ++|+.| ||+ ||+|+
T Consensus 219 ~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~-tG-fGRtG~~~~~~~~~gv~P---Div--t~gK~ 291 (466)
T PRK07036 219 DNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVV-TG-FGRLGHFFASEAVFGIQP---DII--TFAKG 291 (466)
T ss_pred CceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeech-hC-CCcCchhhhhhhhcCCCC---CEE--EEccc
Confidence 34679999999999999887 999999999999999999998 45 788886443 4 689876 777 99999
Q ss_pred hcc---ccceeecCHHHHHHHHhc---C--CcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 369 FGS---MGGYVAGSKSTIDYIRAN---S--HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 369 ~G~---~GG~v~gs~~li~~l~~~---~--~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
+|. +-|.+++++++++.+... . ..+..|.+.+|+.+++++++|+++++++-.+..++..+
T Consensus 292 l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~ 359 (466)
T PRK07036 292 LTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGLCEHVREVGP 359 (466)
T ss_pred cccCccccEEEEEcHHHHHHHhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 962 456777899999987632 1 11223556799999999999999987765555555443
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.6e-16 Score=159.72 Aligned_cols=113 Identities=22% Similarity=0.228 Sum_probs=86.7
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|+|+++.|.+.+ |++|+++|++||++||+||+|+ | +|++|.++. +++++.| ||+ ||||++|
T Consensus 198 ~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-G-~GrtG~~~~~~~~~v~P---Di~--t~~K~l~ 270 (425)
T PRK09264 198 LPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQA-G-CGRTGTFFSFERAGITP---DIV--TLSKSIS 270 (425)
T ss_pred ceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhh-C-CccccHHHHHhhcCCCC---CEE--EeccccC
Confidence 4679999999999997653 9999999999999999999996 6 799987754 6778865 666 9999997
Q ss_pred ccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH-HHHHccC
Q psy2206 371 SMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM-RIIMGLE 418 (430)
Q Consensus 371 ~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL-~~l~~~~ 418 (430)
..| |++++++++. .+.... +..+.+.+|+.++++++++ +++++++
T Consensus 271 ~~G~pigav~~~~~i~-~~~~~~--~~~T~~gnp~~~aaa~a~l~~~~~~~~ 319 (425)
T PRK09264 271 GYGLPMALVLIKPELD-VWKPGE--HNGTFRGNNLAFVTATAALEEYWSDDA 319 (425)
T ss_pred CCccceEEEEEchhhh-ccCCCc--cCCCCCCCHHHHHHHHHHHHHHHhhhH
Confidence 645 8888888863 332211 2234456788888888999 5655543
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-15 Score=160.40 Aligned_cols=125 Identities=23% Similarity=0.261 Sum_probs=98.2
Q ss_pred ceEEEEEcCccC-CCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEGIFS-MDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~v~s-m~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~ 369 (430)
+.+.||+|+|.+ ..|.+.| |++|+++|++||++||+||+++ | +|++|..++ +++++.| ||+ ||+|++
T Consensus 199 ~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~t-G-fGRtG~~~a~~~~gv~P---Div--~~gK~l 271 (443)
T PRK07483 199 TVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMC-G-MGRTGTLFACEEDGVAP---DLV--TIAKGL 271 (443)
T ss_pred ceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEeccee-C-cccCcHHHHHhhcCCCC---Cee--eehhhh
Confidence 457899999997 4677665 9999999999999999999984 6 689998765 7889876 787 999999
Q ss_pred c---cccceeecCHHHHHHHHhcCC--cccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 370 G---SMGGYVAGSKSTIDYIRANSH--VRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 370 G---~~GG~v~gs~~li~~l~~~~~--~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
| .+-|.+++++++++.+..... .+..|.+.+|+.+++++++|+++++++-.+..++..
T Consensus 272 ~gG~~Pi~av~~~~~i~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g 334 (443)
T PRK07483 272 GAGYQPIGAVLASDRIYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGLLANVRARG 334 (443)
T ss_pred ccCccccEEEEEcHHHHHHHhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6 255777889999988764221 123455679999999999999998876555544443
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.1e-15 Score=158.88 Aligned_cols=125 Identities=17% Similarity=0.193 Sum_probs=94.4
Q ss_pred ceEEEEEcC-ccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEG-IFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~-v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~ 369 (430)
+.+.||+|+ +.+..|...+ |++|+++|++||++||+||+| +| +|++|.+++ +++++.| ||+ |+||++
T Consensus 199 ~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~-tg-~gr~G~~~a~~~~~v~p---Di~--~~~K~l 271 (423)
T PRK05964 199 EIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIA-TG-FGRTGTLFACEQAGVSP---DIM--CLSKGL 271 (423)
T ss_pred cEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechh-hC-CCcCcchhHHHhcCCCC---Cee--eeehhh
Confidence 456899999 4666676664 999999999999999999999 56 688887754 7778765 676 899999
Q ss_pred c---cccceeecCHHHHHHHHhc--CCcccc--cCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 370 G---SMGGYVAGSKSTIDYIRAN--SHVRSY--ATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 370 G---~~GG~v~gs~~li~~l~~~--~~~~~~--s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
+ .+.|++++++++++.+... ...+.+ |...+|+.+++++++|+++++++-.++..+..
T Consensus 272 ~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~g 336 (423)
T PRK05964 272 TGGYLPLAATLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAALS 336 (423)
T ss_pred hcCcccceEEEEcHHHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5 2457788999999988642 122223 33579999999999999998765444444443
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=159.37 Aligned_cols=126 Identities=21% Similarity=0.290 Sum_probs=98.7
Q ss_pred ceEEEEEcCccCCC-CcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEGIFSMD-GSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~v~sm~-G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~ 369 (430)
+.+.||+|++.... |.+.| |++|+++|++||++||+||+++ | +|++|.+++ +++++.| ||+ +|+|++
T Consensus 199 ~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~t-G-fGRtG~~~a~~~~gv~P---Di~--~~gK~l 271 (447)
T PRK06917 199 HIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMT-G-LGRTGAMFAMEHWGVEP---DIM--TLGKGL 271 (447)
T ss_pred ceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhh-C-cCcccchhhHHhcCCCC---CEE--Eeeehh
Confidence 47899999998754 45554 9999999999999999999995 7 799998765 7889876 776 999999
Q ss_pred c---cccceeecCHHHHHHHHhcCCcc--cccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 370 G---SMGGYVAGSKSTIDYIRANSHVR--SYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 370 G---~~GG~v~gs~~li~~l~~~~~~~--~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
| .+.|++++++++++.+......+ ..|.+.+|+.+++++++|+++++++-.+..+++.+
T Consensus 272 ~~G~~Pi~a~~~~~~i~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~ 335 (447)
T PRK06917 272 GAGYTPIAATVVSDRVMEPILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNLPEKAAEKGE 335 (447)
T ss_pred ccCCcceEEEEEcHHHHHHHhccCcccccccCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 6 26678889999999886533222 23556799999999999999987765555444433
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.1e-16 Score=160.72 Aligned_cols=122 Identities=20% Similarity=0.215 Sum_probs=98.8
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.+.||+|++.+..|.+.| |++|+++|++||++||+||+++ | +|++|.++ .+++++.| ||+ |++|++|
T Consensus 219 ~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~t-G-fgRtG~~fa~~~~gv~P---Div--~~gK~l~ 291 (443)
T PRK06058 219 NLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQT-G-FARTGAWFACEHEGIVP---DLI--TTAKGIA 291 (443)
T ss_pred ceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCcChhhhHHHhcCCCC---CEE--EEccccc
Confidence 4678999999999998875 9999999999999999999995 6 68888765 47788876 777 8899996
Q ss_pred --cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 371 --SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 371 --~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
.+-|++++++++++.+.... +..|.+.+|+.+++++++|+++++++-.+..+++
T Consensus 292 ~G~Pi~av~~~~~i~~~~~~~~--~~~T~~gnpl~~aaa~a~L~~~~~~~l~~~~~~~ 347 (443)
T PRK06058 292 GGLPLSAVTGRAEIMDAPHPGG--LGGTYGGNPVACAAALAAIETIEEDDLVARARQI 347 (443)
T ss_pred CCCccEEEEEcHHHHhhccCCC--CCCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 33478889999999886543 3356678999999999999999877655544443
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-16 Score=157.82 Aligned_cols=124 Identities=25% Similarity=0.322 Sum_probs=98.2
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+...||+|++.+..|.+.+ |++|+++|++||++||+||++ +| +|++|..++ +++++.| ||+ ||+|+++
T Consensus 177 ~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~-tG-~gRtG~~~a~~~~gv~P---Div--~~gK~l~ 249 (339)
T PF00202_consen 177 EIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQ-TG-FGRTGKFFASEHYGVDP---DIV--TFGKGLG 249 (339)
T ss_dssp GEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETT-TT-TTTTSSSSGHHHHTSSS---SEE--EEEGGGG
T ss_pred cEEEEEEeccccccCccccccchhhehcccccccccceeccccc-cc-ccccCCccceecccccC---ccc--ccccchh
Confidence 5789999999998887765 999999999999999999998 46 688888664 7899876 788 8999995
Q ss_pred --cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 371 --SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 371 --~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
.+-|.+++++++.+.+.... +..|...+|+.+++++++|+++++++-.+..+++.+
T Consensus 250 gG~p~sav~~~~~i~~~~~~~~--~~~T~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~ 307 (339)
T PF00202_consen 250 GGLPISAVLGSEEIMEAFQPGS--HGSTFGGNPLSCAAALATLEILEEEDLLERVRELGE 307 (339)
T ss_dssp TTSSEEEEEEEHHHHTTSCTTS--STCTTTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred hhhhcccccccchhhccccccc--cccccccchHhhhhhhhHHHhhccHHHHHHHHHHHH
Confidence 34467889999998775444 334556799999999999999998866555555443
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-15 Score=158.35 Aligned_cols=120 Identities=17% Similarity=0.155 Sum_probs=95.3
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.+.++||+|+++++.|.+.+ +++|+++|++||+++|+||+|+ | +|++|.++ .+++++.| ||+ ||||++
T Consensus 197 ~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-G-~gr~G~~~a~~~~gv~p---Di~--tlsK~l 269 (425)
T PRK07495 197 QRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQT-G-FARTGKLFAMEHHEVAA---DLT--TMAKGL 269 (425)
T ss_pred CceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-c-CCcCCCceeecccCCCC---CEE--eehhhh
Confidence 35789999999999886543 9999999999999999999995 6 78888764 46677765 665 999999
Q ss_pred c--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHH
Q psy2206 370 G--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEG 423 (430)
Q Consensus 370 G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~ 423 (430)
+ .+.|++++++++++.+.... +..+.+.+|+.+++++++|+++++++-.+..
T Consensus 270 ~~G~pigav~~~~~i~~~~~~~~--~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~ 323 (425)
T PRK07495 270 AGGFPLAAVTGRAEIMDAPGPGG--LGGTYGGNPLGIAAAHAVLDVIEEEDLCERA 323 (425)
T ss_pred cCCccceEEEEcHHHHhccCCCC--cCCCCCCCHHHHHHHHHHHHHHHhchHHHHH
Confidence 6 35588999999998876533 3345578999999999999999876543333
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-15 Score=157.31 Aligned_cols=124 Identities=24% Similarity=0.307 Sum_probs=99.6
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.+.+.||+|++.+++|.+.| |++|.++|++||++||+||+|+ | +|++|.++. +++++.| ||+ ||||++
T Consensus 203 ~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g-~gr~G~~~a~~~~~~~p---Dii--tlsK~l 275 (443)
T PRK08360 203 EGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQS-G-LGRTGKWFAIEHFGVEP---DII--TLGKPL 275 (443)
T ss_pred CCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCcCccchhhhhcCCCC---CEE--Eecccc
Confidence 45789999999999998776 9999999999999999999996 4 678887653 6678765 666 899999
Q ss_pred cc--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 370 GS--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 370 G~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
|. +.|++++++++++.+.... +.++.+.+|+.+++++++|+++++++-.+..++..
T Consensus 276 ~~G~pigav~~~~~i~~~~~~~~--~~~T~~~~p~~~aaa~a~l~~l~~~~l~~~~~~~g 333 (443)
T PRK08360 276 GGGLPISATIGRAEIMDSLPPLA--HAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLG 333 (443)
T ss_pred cCCceeEEEEEcHHHHhhhcCCC--CCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 73 3589999999999886432 44677789999999999999998775544444433
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-15 Score=158.85 Aligned_cols=126 Identities=20% Similarity=0.221 Sum_probs=97.9
Q ss_pred ceEEEEEcC-ccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEG-IFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~-v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~ 369 (430)
+.+.||+|+ |.+..|.+.| |++|+++|++||++||+||++ +| +|++|..++ +++|+.| ||+ +|+|++
T Consensus 214 ~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~-TG-fGRtG~~~a~~~~gv~P---Div--~~gKgl 286 (466)
T PRK07030 214 EIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIA-VG-FGRTGTMFACEQAGIRP---DFL--CLSKAL 286 (466)
T ss_pred ceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehh-hC-cCccccchHHHhcCCCC---CEE--eeehhc
Confidence 567899999 6888787665 999999999999999999998 46 688888665 7889876 787 999998
Q ss_pred c---cccceeecCHHHHHHHHhc-----CCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 370 G---SMGGYVAGSKSTIDYIRAN-----SHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 370 G---~~GG~v~gs~~li~~l~~~-----~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
| .+-|.+++++++++.+... ...+..|.+.+|+.|++++++|+++++++-.+..++..+
T Consensus 287 ~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~G~ 353 (466)
T PRK07030 287 TGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIENNRALAR 353 (466)
T ss_pred cCCcccceEEEecHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 6 2456678899999877531 112234556799999999999999988865555544433
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-15 Score=157.05 Aligned_cols=125 Identities=23% Similarity=0.261 Sum_probs=99.6
Q ss_pred CCceEEEEEcCccCC-CCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccc
Q psy2206 294 PWRKILIVVEGIFSM-DGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTK 367 (430)
Q Consensus 294 ~~~~~lIi~E~v~sm-~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSK 367 (430)
|++.+.+|+|+|..- .|.+.| |++|++||++||++||+||+- +| ||++|.-+ ++++|+.| ||+ |++|
T Consensus 212 ~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~-tG-FGRTG~~FA~e~~gi~P---Di~--~~aK 284 (449)
T COG0161 212 PETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVA-TG-FGRTGKMFACEHAGIVP---DIL--CLAK 284 (449)
T ss_pred cccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecce-eC-CCcCchhhhhhhcCCCC---Cee--eecc
Confidence 467899999999776 777766 999999999999999999995 67 89999877 48999987 788 9999
Q ss_pred hhc---cccceeecCHHHHHHHHhc-C--CcccccCCCcHHHHHHHHHHHHHHHccCCchHHHh
Q psy2206 368 SFG---SMGGYVAGSKSTIDYIRAN-S--HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNV 425 (430)
Q Consensus 368 a~G---~~GG~v~gs~~li~~l~~~-~--~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~ 425 (430)
++. ++-|.++.+.++.+.+... . ..+.+|.+.+|+.||++++.|+++++++-.++.++
T Consensus 285 GLT~GY~Pl~a~l~~~~I~~~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~e~l~~~~~~ 348 (449)
T COG0161 285 GLTGGYLPLSAVLTSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAE 348 (449)
T ss_pred cccccchhhHhHhhhHHHHHHHhcccCCeeccCCccccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 985 1224456778888887764 2 22345777899999999999999998865544443
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-15 Score=160.63 Aligned_cols=126 Identities=19% Similarity=0.201 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++||+++.+. + .+.+|+.+++|+|+++ +++|.++|++||++|++|+||++|+++..+.. ..
T Consensus 172 ~d~Le~~l~~~---------~--pklIv~~~S~~s~~~D---~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~--~p-- 233 (475)
T PLN03226 172 YDKLEKKAMLF---------R--PKLIIAGASAYPRDWD---YARMRKIADKVGALLMCDMAHISGLVAAQEAA--SP-- 233 (475)
T ss_pred HHHHHHHHhhc---------C--CeEEEEecCcCCCccC---HHHHHHHHHHcCCEEEEEchhhhCcccCCCCC--CC--
Confidence 78899988652 1 1344555999998875 55788999999999999999999998765432 11
Q ss_pred CCCCCccEEEeCccchh-ccccceeecCHHHH-----------HH--HHhcCCcccccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 353 IDPREVDILMGTYTKSF-GSMGGYVAGSKSTI-----------DY--IRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~-G~~GG~v~gs~~li-----------~~--l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
+ ..+||+++|++|++ |..||+|+++++++ ++ +.+.+....++++++|..+++..++|+.++++.
T Consensus 234 ~--~~~Div~~t~hK~L~GP~Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~ 311 (475)
T PLN03226 234 F--EYCDVVTTTTHKSLRGPRGGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPE 311 (475)
T ss_pred C--CCCeEEEecCcccccCCCceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcC
Confidence 2 25799999999999 88999999988665 44 344455556788888899998899999987664
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-15 Score=157.48 Aligned_cols=127 Identities=22% Similarity=0.283 Sum_probs=100.1
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.+.+.||+|+|.+..|.+.| |++|+++|++||++||+||+++ | +|++|.+++ +++++.| ||+ +++|++
T Consensus 212 ~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~t-G-fGRtG~~~a~~~~gv~P---Div--~~gKgl 284 (449)
T PRK07481 212 DTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVT-G-FGRTGSWFGSRGWGVKP---DIM--CLAKGI 284 (449)
T ss_pred CcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhh-C-cCcCchhhHhhhcCCCC---CEE--EEeecc
Confidence 34789999999999998776 9999999999999999999984 6 788887654 7788876 777 999999
Q ss_pred cc---ccceeecCHHHHHHHHhcC-----CcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 370 GS---MGGYVAGSKSTIDYIRANS-----HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 370 G~---~GG~v~gs~~li~~l~~~~-----~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
|. +-|.+++++++++.+.... ..+..|.+.+|+.+++++++|+++++++-.+..++..+
T Consensus 285 ~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~ 351 (449)
T PRK07481 285 TSGYVPLGATMVNARIADAFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLPANAAKRGA 351 (449)
T ss_pred cCCCcCceEEEEcHHHHHHHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 62 4567888999999886421 12234556799999999999999988765555554443
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-15 Score=152.18 Aligned_cols=193 Identities=23% Similarity=0.308 Sum_probs=131.0
Q ss_pred ccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecC---CCccCCCCCcHHHHHHHHHHHHHhCCCCCC-C-CC
Q psy2206 198 CFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS---YNYLGFGENTGLCTERSKESVKQSGCALCS-P-SA 272 (430)
Q Consensus 198 ~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S---~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~-s-r~ 272 (430)
.++..+.++.|.+++..+ | +++|||+| |||||++ + |.+++++.+++.+++..... + ..
T Consensus 8 ~~~~~~~~~~g~~~~~~~-------------g--~~~id~~~~~~~~~lG~~-~-p~v~~a~~~~~~~~~~~~~~~~~~~ 70 (379)
T TIGR00707 8 RLPVKIVRGKGAYVYDVN-------------G--KEYLDFVAGIAVNSLGHA-H-PKLVEALKEQLEKLVHVSNLYYTEP 70 (379)
T ss_pred CCCccEEEeecCEEEeCC-------------C--CEEEEcCcchhhccCCCC-C-HHHHHHHHHHHhhccccccccCCHH
Confidence 355678999999998764 6 88999999 8999984 4 58899999999886532110 1 10
Q ss_pred -----------------------HHHHHHHHHHH-------------hh------c----------C--------CC---
Q psy2206 273 -----------------------PSSLEAGLQKA-------------LL------E----------G--------QP--- 289 (430)
Q Consensus 273 -----------------------~~~Le~~L~~~-------------~~------~----------~--------~p--- 289 (430)
.+.++.+++-. .+ + + .|
T Consensus 71 ~~~l~~~la~~~g~~~~~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~ 150 (379)
T TIGR00707 71 QEELAEKLVEHSGADRVFFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVP 150 (379)
T ss_pred HHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChhhhccCCCCCC
Confidence 12222222100 00 0 0 00
Q ss_pred CCC-C------------CCceEEEEEcCccCCCCccc----CHHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eec
Q psy2206 290 HSG-K------------PWRKILIVVEGIFSMDGSIV----RLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYF 351 (430)
Q Consensus 290 ~~~-~------------~~~~~lIi~E~v~sm~G~i~----~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~ 351 (430)
... . ..++.+|+++++.+++|... ++++|.++|++|++++|+||+|+ + +|.+|.+.. +..
T Consensus 151 ~~~~~~~~d~~~l~~~~~~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~-~-~~~~g~~~~~~~~ 228 (379)
T TIGR00707 151 GFSYAPYNDIESLKKAIDDETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQT-G-IGRTGKFFAYEHY 228 (379)
T ss_pred CceeeCCCCHHHHHHHhhhCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCccchhhhHHhc
Confidence 000 0 01356888899999988653 38999999999999999999996 4 566665443 344
Q ss_pred CCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 352 GIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
++.+ |++ ||||+++ .| ||+++++++++.++.......+ +.+|+.++++.++|+.+++.
T Consensus 229 ~~~~---d~~--t~sK~~~-~G~riG~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~aa~aaL~~~~~~ 289 (379)
T TIGR00707 229 GIEP---DII--TLAKGLG-GGVPIGATLAKEEVAEAFTPGDHGSTF--GGNPLACAAALAVLEVIEKE 289 (379)
T ss_pred CCCC---CEE--EEccccc-CCcccEEEEEcHHHHhhhcCCCCCCCC--CCCHHHHHHHHHHHHHHHhh
Confidence 5543 555 8999998 54 8999999999998764433333 46788888899999987643
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-15 Score=170.93 Aligned_cols=125 Identities=22% Similarity=0.205 Sum_probs=100.6
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCC-cc-ceecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR-GV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr-G~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
..+.||+|+|++..|.+.| |++|+++|++||+++|+||++ +| ||++|. .+ .+++|+.| ||+ |++|++
T Consensus 784 ~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVq-tG-fGRtG~~~~a~e~~gv~P---Div--t~gK~l 856 (1013)
T PRK06148 784 GPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQ-VG-FGRVGSHWWAFETQGVVP---DIV--TMGKPI 856 (1013)
T ss_pred ceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecc-cC-CCCCCCcchhhhhcCCCc---cee--eecccc
Confidence 4788999999999998887 999999999999999999998 45 688886 33 47889876 787 999999
Q ss_pred c--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 370 G--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 370 G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
| .+-|.+++++++++.+.... .+..|.+.+|+.|++++++|++|++++-.+..+++.+
T Consensus 857 ggG~Plgav~~~~ei~~~~~~g~-~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~ 916 (1013)
T PRK06148 857 GNGHPMGAVVTTREIADSFDNGM-EYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGN 916 (1013)
T ss_pred cCCcceEEEEEcHHHHhhccCCC-ccccCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 6 34477888999999876422 2445667899999999999999988865555554443
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.2e-15 Score=157.39 Aligned_cols=126 Identities=18% Similarity=0.199 Sum_probs=97.0
Q ss_pred CceEEEEEcC-ccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccch
Q psy2206 295 WRKILIVVEG-IFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKS 368 (430)
Q Consensus 295 ~~~~lIi~E~-v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa 368 (430)
.+.+.||+|+ |.+..|.+.| |++|+++|++||++||+||++ +| +|++|.+++ +++|+.| ||+ +|+|+
T Consensus 222 ~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~-TG-~GRtG~~~a~~~~gv~P---Div--~~gK~ 294 (460)
T PRK06916 222 EEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVA-TG-FGRTGKMFACEHENVTP---DIM--TAGKG 294 (460)
T ss_pred CcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechh-hC-CCcCchhhHHHhcCCCC---Cee--eeehh
Confidence 3568899999 6888887764 999999999999999999998 67 689998754 7889876 777 99999
Q ss_pred hc---cccceeecCHHHHHHHHhc-----CCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 369 FG---SMGGYVAGSKSTIDYIRAN-----SHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 369 ~G---~~GG~v~gs~~li~~l~~~-----~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
+| .+-|.+++++++++.+... ...+..|.+.+|+.+++++++|+++++++-.+..++..
T Consensus 295 l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g 361 (460)
T PRK06916 295 LTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTNLIEQVARKT 361 (460)
T ss_pred hhcCccccceeeecHHHHHHhhccccccCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 96 2345678899998876521 11122355579999999999999998776544444443
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-15 Score=155.12 Aligned_cols=123 Identities=20% Similarity=0.232 Sum_probs=92.2
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+..+||+|++....|.+.| |++|+++|++||++||+||+|+ | +|++|..+. +.+++.| ||+ ||||++|
T Consensus 187 ~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g-~gr~G~~~a~~~~~~~p---di~--t~~K~l~ 259 (408)
T PRK04612 187 DVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQC-G-MGRTGTLFAHWQEQVTP---DIV--TLAKALG 259 (408)
T ss_pred CEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCcCCchhhhhhcCCCC---CEE--EEcchhc
Confidence 5678999999987777664 9999999999999999999996 5 788776543 2334433 554 9999997
Q ss_pred c--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 371 S--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 371 ~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
. +-|++++++++++.+....+.. +.+.+|+.+++++++|+++++++-.+..+++.
T Consensus 260 ~G~piga~~~~~~~~~~~~~~~~~~--t~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g 316 (408)
T PRK04612 260 GGFPIGAMLAGPKVAETMQFGAHGT--TFGGNPLAAAVARVALRKLASPQIAANVARQS 316 (408)
T ss_pred CCCceEEEEECHHHHhhhcCCCcCC--CCCCCHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 2 3367778888988887644443 34478999999999999998765444444433
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.3e-15 Score=150.40 Aligned_cols=108 Identities=15% Similarity=0.202 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.|++.... + ..++.+|+++++++++|++.|+++|.++|++||++||+||||+.|.++..+.
T Consensus 129 ~~~l~~~l~~~~~~-----~-~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~------- 195 (370)
T TIGR02539 129 PEGYGEVIEEVEDE-----S-GKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAK------- 195 (370)
T ss_pred HHHHHHHHHHhhhc-----c-CCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHH-------
Confidence 68888888642100 0 1245688889999999999999999999999999999999999875543321
Q ss_pred CCCCCccEEEeCccchhcccc--ceeecCHHHHHHHHhcCCcccc
Q psy2206 353 IDPREVDILMGTYTKSFGSMG--GYVAGSKSTIDYIRANSHVRSY 395 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G--G~v~gs~~li~~l~~~~~~~~~ 395 (430)
. .++||+++||||++++.| ||+++++++++.++....++.+
T Consensus 196 -~-~~~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~~~~ 238 (370)
T TIGR02539 196 -E-IGADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRYSPV 238 (370)
T ss_pred -H-cCCCEEEeeCcccccCCCCEEEEEECHHHHhhhcccccCCcc
Confidence 1 246899999999999777 9999999999999987665443
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.4e-15 Score=153.76 Aligned_cols=120 Identities=21% Similarity=0.201 Sum_probs=93.6
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.+.+.||+|+|.++.|.+.| +++|+++|++||++||+||+++ | +|++|... .+++++.| ||+ ||||++
T Consensus 196 ~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~t-g-~gr~g~~~a~~~~~~~p---Di~--~lsK~l 268 (420)
T TIGR00700 196 NNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQT-G-FARTGAMFACEHEGPEP---DLI--TTAKSL 268 (420)
T ss_pred CcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEeccc-C-CcccchhHHHhhcCCCC---CEE--Eeeccc
Confidence 35689999999999998777 9999999999999999999985 4 56777543 35677654 666 799999
Q ss_pred c--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHH
Q psy2206 370 G--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEG 423 (430)
Q Consensus 370 G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~ 423 (430)
+ .+-|++++++++++.+....+. .+.+.+|+.+++++++|+++++++-.+..
T Consensus 269 ~~G~pig~v~~~~~i~~~~~~~~~~--~T~~~~pl~~aaa~a~l~~l~~~~~~~~~ 322 (420)
T TIGR00700 269 ADGLPLSGVTGRAEIMDAPAPGGLG--GTYAGNPLACAAALAVLAIIESEGLIERA 322 (420)
T ss_pred cCCcceEEEEecHHHHhhcCCCCcC--CCCCcCHHHHHHHHHHHHHHHhccHHHHH
Confidence 7 2338899999999887643332 35567899999999999998776543333
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.7e-15 Score=155.44 Aligned_cols=126 Identities=20% Similarity=0.212 Sum_probs=97.0
Q ss_pred CceEEEEEcC-ccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccch
Q psy2206 295 WRKILIVVEG-IFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKS 368 (430)
Q Consensus 295 ~~~~lIi~E~-v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa 368 (430)
.+.+.||+|+ +.+..|.+.| |++|+++|++||++||+||++ +| +|++|..++ +++|+.| ||+ +|+|+
T Consensus 235 ~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~-TG-fGRtG~~~a~e~~gv~P---Div--~~gKg 307 (472)
T PRK08742 235 GEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIA-TG-FGRTGTLFACEQAGVMP---DLL--CLSKG 307 (472)
T ss_pred CceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechh-hC-CCCCccchHHHhcCCCC---CEE--EEccc
Confidence 3567899999 5877787655 999999999999999999998 46 788887764 7889876 788 99999
Q ss_pred hc---cccceeecCHHHHHHHHhcC----CcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 369 FG---SMGGYVAGSKSTIDYIRANS----HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 369 ~G---~~GG~v~gs~~li~~l~~~~----~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
+| .+-|.+++++++++.+.... ..+..|.+.+|+.+++++++|+++++++-.+..++..
T Consensus 308 l~gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g 373 (472)
T PRK08742 308 LTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDVIARNQPTA 373 (472)
T ss_pred ccCCCCCcceeeccHHHHHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 96 24566778999988765311 1122355679999999999999998886554444443
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.4e-15 Score=150.70 Aligned_cols=119 Identities=24% Similarity=0.360 Sum_probs=89.2
Q ss_pred ceEEEEEcCccCCCCccc-C---HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIV-R---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~-~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++|++|++.+++|... + +++|+++|++||++||+||+|+ | +|.+|.+.+ +.+++.| ||+ ||||+++
T Consensus 182 ~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~-g-~g~~g~~~~~~~~~~~p---di~--t~sK~~~ 254 (396)
T PRK02627 182 KTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQT-G-MGRTGKLFAYQHYGIEP---DIM--TLAKGLG 254 (396)
T ss_pred CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhc-C-CCccCceeeehhcCCCC---CEE--EEcchhh
Confidence 567899999999988433 2 9999999999999999999997 5 566665433 4556543 555 8999998
Q ss_pred ccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHH
Q psy2206 371 SMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGN 424 (430)
Q Consensus 371 ~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~ 424 (430)
.| |++++++++++.+...... .+.+.+|+.+++++++|+.+.+++..+..+
T Consensus 255 -~G~rig~~~~~~~~~~~~~~~~~~--~t~~~~~~~~~aa~~~l~~~~~~~~~~~~~ 308 (396)
T PRK02627 255 -GGVPIGAVLAKEKVADVFTPGDHG--STFGGNPLACAAALAVIEIIEEEGLLENAA 308 (396)
T ss_pred -CCcccEEEEEcHHHHhccCCCCCC--CCCCCCHHHHHHHHHHHHHHhhccHHHHHH
Confidence 44 8899999999887653322 344578899999999999886654333333
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.7e-15 Score=152.82 Aligned_cols=121 Identities=21% Similarity=0.199 Sum_probs=95.7
Q ss_pred ceEEEEEcCccCCCCccc-C---HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIV-R---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~-~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|+++++.|.+. | +++|+++|++||++||+||+++ | +|++|.+++ +++++.| || .||||+++
T Consensus 198 ~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-g-~gr~G~~~a~~~~~~~p---Di--~t~gK~l~ 270 (421)
T PRK09792 198 QVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQS-G-FARTGKLFAMDHYADKP---DL--MTMAKSLA 270 (421)
T ss_pred ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCCCCchhHHHhcCCCC---cE--EEeehhhc
Confidence 467999999999999754 5 9999999999999999999985 4 678887654 6677654 65 49999996
Q ss_pred --cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHh
Q psy2206 371 --SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNV 425 (430)
Q Consensus 371 --~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~ 425 (430)
.+-|++++++++++.+.... +..|.+.+|+.+++++++++++++++.....++
T Consensus 271 ~G~pigav~~~~~i~~~~~~~~--~~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~~ 325 (421)
T PRK09792 271 GGMPLSGVVGNANIMDAPAPGG--LGGTYAGNPLAVAAAHAVLNIIDKESLCERANQ 325 (421)
T ss_pred CCCceEEEEEcHHHHhccCCCC--cCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34588999999998876433 334557899999999999999987654444443
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=9e-15 Score=149.70 Aligned_cols=117 Identities=19% Similarity=0.243 Sum_probs=90.4
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.+.||+|++.++.|.+.| |++|.++|++||++||+||+++ |+ ++|..+. +++++.| ||+ +|+|++|
T Consensus 162 ~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~t-G~--RtG~~~a~~~~gv~P---Div--~~gK~lg 233 (364)
T PRK04013 162 ETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQS-GL--RTGKFLAIEHYKVEP---DIV--TMGKGIG 233 (364)
T ss_pred CcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-cC--CCCchhHHHhcCCCC---CEE--Eeccccc
Confidence 4678999999998887664 9999999999999999999995 64 7887554 6788876 777 9999996
Q ss_pred c--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 371 S--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 371 ~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
. +-|.++.+.++. . ..+..|.+.+|+.+++++++|+++++++-.+..++.
T Consensus 234 gG~P~~a~~~~~~~~----~--~~~~~T~~gnp~~~aaa~a~l~~i~~~~l~~~~~~~ 285 (364)
T PRK04013 234 NGVPVSLTLTNFDVE----R--GKHGSTFGGNPLACKAVAVTLRILRRERLVEKAGEK 285 (364)
T ss_pred CCceeEEEEeccccc----C--CCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3 335566665541 1 123456678999999999999999888655544443
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=152.75 Aligned_cols=123 Identities=20% Similarity=0.182 Sum_probs=94.9
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.+.||+|+|.+..|.+.| |++|.++|++||++||+||++ +| ||++|.+++ +++|+.| ||+ +++|++|
T Consensus 231 ~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~-tG-fGRtG~~~a~e~~gv~P---Div--~~gKglg 303 (464)
T PRK06938 231 LPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQ-SG-FGRTGKMFAFEHAGIIP---DVV--VLSKAIG 303 (464)
T ss_pred ceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cC-CCcCcHHHHHHhcCCCC---CEE--Eeecccc
Confidence 4689999999998888765 999999999999999999998 46 688887654 7899976 788 9999996
Q ss_pred --cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 371 --SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 371 --~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
.+-|.+++++++ +.+... .+..|.+.+|+.+++++++|+++++++-.+..++..+
T Consensus 304 gG~PlsAv~~~~~~-~~~~~~--~~~~T~~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G~ 360 (464)
T PRK06938 304 GSLPLAVVVYREWL-DTWQPG--AHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMGE 360 (464)
T ss_pred CCCceEEEeehhHh-hccCCC--CCCCCCCcCHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 233566677764 544322 2334566899999999999999988765555554433
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-14 Score=150.38 Aligned_cols=112 Identities=20% Similarity=0.222 Sum_probs=87.3
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|+|.++.|.+.| |++|+++|++||++||+||+++ | +|++|.+++ +++++.| ||+ ||||++|
T Consensus 194 ~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-G-~GRtG~~~a~~~~~v~P---Di~--~~~K~lg 266 (412)
T TIGR02407 194 LPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQA-G-CGRTGTFFSFEPAGIEP---DIV--CLSKSIS 266 (412)
T ss_pred ceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCccchhHHhcccCCCC---CEE--Eechhcc
Confidence 4578999999999998654 9999999999999999999985 6 789888764 6778876 666 8999997
Q ss_pred ccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH-HHcc
Q psy2206 371 SMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI-IMGL 417 (430)
Q Consensus 371 ~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~-l~~~ 417 (430)
..| |++++++++ +.+... .+..+.+.+|+.+++++++|++ ++++
T Consensus 267 ~~G~pigav~~~~~~-~~~~~~--~~~~T~~gnpl~~aaa~a~l~~~i~~~ 314 (412)
T TIGR02407 267 GYGLPLALTLIKPEL-DVWKPG--EHNGTFRGNNLAFVTATAALEYYWSDD 314 (412)
T ss_pred CCccceeEEEEchhh-hccCCC--ccCCCCCccHHHHHHHHHHHHHHhccc
Confidence 534 788888876 544322 2233556789999999999996 5444
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.2e-15 Score=150.73 Aligned_cols=121 Identities=24% Similarity=0.229 Sum_probs=94.2
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|++.++.|.+.+ +++|+++|++||++||+||+|+ | +|++|.++. +++++.| || .||||+++
T Consensus 167 ~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~t-g-~gr~g~~~~~~~~~~~P---Di--~t~sK~l~ 239 (382)
T PLN00144 167 KTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQC-G-LGRTGYLWAHEAYGVEP---DI--MTLAKPLA 239 (382)
T ss_pred CeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCccchHhhhhhcCCCC---CE--EEeccccc
Confidence 4678999999888555543 9999999999999999999995 4 678887554 5778876 54 49999995
Q ss_pred --cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHh
Q psy2206 371 --SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNV 425 (430)
Q Consensus 371 --~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~ 425 (430)
.+.|++++++++++.+....+ ..+.+.+|+.+++++++|+++++++-.+..++
T Consensus 240 ~G~pig~v~~~~~~~~~~~~~~~--~~T~~~~pl~~aaa~a~l~~i~~~~~~~~~~~ 294 (382)
T PLN00144 240 GGLPIGAVLVTEKVASAINPGDH--GSTFAGGPLVCNAALAVLDKISKPGFLASVAK 294 (382)
T ss_pred CCcceEEEEEcHHHHhccCCCCC--CCCCCCCHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 566899999999998865333 34556899999999999999976654333333
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.7e-14 Score=151.92 Aligned_cols=123 Identities=22% Similarity=0.249 Sum_probs=94.5
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.+.||+|+|.+..|.+.| |++|+++|++||++||+||++ +| +|++|.+++ +++|+.| ||+ |++|++|
T Consensus 225 ~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~-tG-fGRtG~~~a~~~~gv~P---Div--t~gK~l~ 297 (459)
T PRK06931 225 KPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQ-AG-FARTGKMFAFEHAGIEP---DII--VMSKAVG 297 (459)
T ss_pred ceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecch-hc-CCcCchHHHhhhcCCCC---CEE--Eeccccc
Confidence 4689999999999888765 999999999999999999998 46 688888664 7889876 787 9999996
Q ss_pred --cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 371 --SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 371 --~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
.+-|.++++++ ++.+... .+..|.+.+|+.+++++++|+++++++-.+..++..+
T Consensus 298 gG~Pi~av~~~~~-~~~~~~~--~~~~T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~ 354 (459)
T PRK06931 298 GGLPLAVLGIKKE-FDAWQPG--GHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGE 354 (459)
T ss_pred CCcceeeeeeHHH-HhhccCC--CCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 23355666665 4554322 2334556899999999999999988765555444443
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.4e-14 Score=148.90 Aligned_cols=121 Identities=17% Similarity=0.218 Sum_probs=92.6
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+...||+|++.+..|.+.| |++|+++|++||++||+||+++ | ||++|..++ +++++.| ||+ ++||++|
T Consensus 206 ~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~t-G-fGRtG~~~a~~~~gv~P---Div--~~gK~l~ 278 (442)
T TIGR00709 206 KPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQA-G-FGRSGTMFAFEHAGIEP---DFV--VMSKAVG 278 (442)
T ss_pred ceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCCCCchhHHHHcCCCC---cEE--EEccccc
Confidence 5688999999998887754 9999999999999999999984 5 678887654 6788875 788 6999997
Q ss_pred c--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 371 S--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 371 ~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
. +-|+++++++ ++.+... .+..|.+.+|+.+++++++|+++++++-.+..+++
T Consensus 279 ~G~Pigav~~~~~-~~~~~~~--~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~ 333 (442)
T TIGR00709 279 GGLPLAVLLIAPE-FDAWQPA--GHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQER 333 (442)
T ss_pred CCcccEEEEEchH-HhccCCC--cCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 4 2377778877 4443221 23345668999999999999999877654444443
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.7e-14 Score=147.66 Aligned_cols=123 Identities=20% Similarity=0.215 Sum_probs=95.3
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.+.++||+|+++++.|.+.+ +.+|+++|++||++||+||+|+ | +|.+|.+. .+..++.| | ++||||++
T Consensus 198 ~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~-g-~g~~g~~~~~~~~~~~p---d--i~s~sK~l 270 (425)
T PRK08088 198 EDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQT-G-AGRTGTLFAMEQMGVAA---D--LTTFAKSI 270 (425)
T ss_pred CceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCcCcchhHHhhcCCCC---C--EEEEeccc
Confidence 35679999999999998887 9999999999999999999997 4 67776653 24555543 5 46999999
Q ss_pred c--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 370 G--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 370 G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
+ ..-||+++++++++.+..... ..+.+.+|+.++++++.|+.+..++.....++.
T Consensus 271 ~~G~rig~v~~~~~~~~~~~~~~~--~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~ 327 (425)
T PRK08088 271 AGGFPLAGVTGRAEVMDAIAPGGL--GGTYAGNPIACAAALAVLKVFEQENLLQKANAL 327 (425)
T ss_pred cCCCcceeeEecHHHHhhcCCCCC--CCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 7 223789999999998876443 345567899999999999998766544444443
|
|
| >KOG1402|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.7e-15 Score=144.07 Aligned_cols=198 Identities=19% Similarity=0.247 Sum_probs=146.2
Q ss_pred HHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeee-cCCCccCCCCCcHHHHHHHHHHHH
Q psy2206 183 FVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNL-ASYNYLGFGENTGLCTERSKESVK 261 (430)
Q Consensus 183 ~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf-~S~nYLGl~~~~~~v~~a~~~ai~ 261 (430)
.|.=|.-+-|..+. -....+.|+++++.+ | +++++| +.|.-..-++.+|.++++.++.++
T Consensus 29 ~E~k~~ahnyhpLp----vvf~ka~g~~vwD~e-------------G--k~ylDflsaysaVnqGhchpki~~aLqeq~~ 89 (427)
T KOG1402|consen 29 RENKYGAHNYHPLP----VVFSKAKGSRVWDPE-------------G--KEYLDFLSAYSAVNQGHCHPKIIKALQEQAD 89 (427)
T ss_pred hhhhcccccCCcCc----eEEEecCCcEEECCC-------------c--cchhhhhhhhhhcccCCCCHHHHHHHHHHHh
Confidence 34445556666663 334678999999876 7 889999 667777777777899999988776
Q ss_pred HhCCCCCC----------------------------CCC-----------------------------------------
Q psy2206 262 QSGCALCS----------------------------PSA----------------------------------------- 272 (430)
Q Consensus 262 ~yG~g~~~----------------------------sr~----------------------------------------- 272 (430)
+.-..+-+ ...
T Consensus 90 kLtlssrafYnd~~~~f~~~vt~lf~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais 169 (427)
T KOG1402|consen 90 KLTLSSRAFYNDVLGEFAEYVTKLFGYDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAIS 169 (427)
T ss_pred HhhhhhHHHhhhhHHHHHHHHHHhcCcceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEE
Confidence 52111000 000
Q ss_pred --------------------------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC----HHHHHHHH
Q psy2206 273 --------------------------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR----LPEIVRLK 322 (430)
Q Consensus 273 --------------------------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~----L~~I~~La 322 (430)
.++||..|+. .+.+.+++|+|....|.+.| |+++++||
T Consensus 170 ~s~d~ds~~~fgp~~P~~~~~v~Y~d~eale~~l~~------------~~vaaFivEPIQGEaGVvvP~~GYL~~vreLC 237 (427)
T KOG1402|consen 170 LSTDPDSWDGFGPFLPGVVDKVPYGDAEALEVALKS------------PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELC 237 (427)
T ss_pred ecCCcchhhccCCCCCCcceeeccCCHHHHHHHhcC------------CCeeEEEeeccccccceEeCCchhHHHHHHHH
Confidence 1555655554 25778999999999999987 99999999
Q ss_pred HhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhcc---ccceeecCHHHHHHHHhcCCcccccCC
Q psy2206 323 NKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFGS---MGGYVAGSKSTIDYIRANSHVRSYATS 398 (430)
Q Consensus 323 ~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G~---~GG~v~gs~~li~~l~~~~~~~~~s~s 398 (430)
++|++++|+||+++ | +|++|+-++ ++-.+.| ||+ -|+|+++. +-..++++.+++..++...++.. ..
T Consensus 238 tkynvl~I~DEvQT-G-l~RTGk~la~d~env~P---Div--ilgKalSGG~~Pvsavl~~~~im~~~~pgeHgsT--yg 308 (427)
T KOG1402|consen 238 TKYNVLLIADEVQT-G-LARTGKLLACDYENVRP---DIV--ILGKALSGGVYPVSAVLADDDIMLNIKPGEHGST--YG 308 (427)
T ss_pred HhhcEEEEehhhhh-c-ccccCcEEEeehhhcCC---CeE--EEeccccCCeeeeEEEEecHHHHhccCCCccccc--cC
Confidence 99999999999994 6 689999876 6666655 777 78999961 22446788999988776655544 44
Q ss_pred CcHHHHHHHHHHHHHHHccCCc
Q psy2206 399 MPPPVAMQILTSMRIIMGLENG 420 (430)
Q Consensus 399 ~~P~~~aaalaaL~~l~~~~~~ 420 (430)
.+|..++++.++|+++.+++-.
T Consensus 309 gNpLg~~vaiAalevi~eekL~ 330 (427)
T KOG1402|consen 309 GNPLGCAVAIAALEVIVEEKLV 330 (427)
T ss_pred CChHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999888643
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.3e-14 Score=146.35 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=72.9
Q ss_pred eEEEEE-cCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchh-ccccc
Q psy2206 297 KILIVV-EGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSF-GSMGG 374 (430)
Q Consensus 297 ~~lIi~-E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~-G~~GG 374 (430)
+++|++ +++|+|. .|+++|.++|++||++|++|+||++|+++. |. ..+.. ..+|++++|++|++ |..||
T Consensus 169 ~klVi~~~~~~g~~---~dl~~l~~la~~~g~~livD~Aha~G~~~~---g~--~~~~~-~~~Di~~~s~~K~l~g~~GG 239 (416)
T PRK13034 169 PKLIIAGFSAYPRE---LDFARFREIADEVGALLMVDMAHIAGLVAA---GE--HPNPF-PHAHVVTTTTHKTLRGPRGG 239 (416)
T ss_pred CeEEEECCCccccc---cCHHHHHHHHHHcCCEEEEeCcccccCccc---CC--CCCCC-CCceEEEEeCcccCCCCCCe
Confidence 446666 5777655 478888889999999999999999998763 32 12211 35799999999999 57789
Q ss_pred eeecCHHHH-HHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 375 YVAGSKSTI-DYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 375 ~v~gs~~li-~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
+++++.+.+ +.++....+.+.+.+.+|..++++++.++++
T Consensus 240 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~ 280 (416)
T PRK13034 240 MILTNDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEAL 280 (416)
T ss_pred EEEECcHHHHHHHHhhcCCcccCCccHHHHHHHHHHHHHHh
Confidence 988866554 4444322111223355666655555555555
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.3e-14 Score=149.54 Aligned_cols=126 Identities=21% Similarity=0.234 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
.+++++++.+. ++ .|++-+..+. +.+.|+++|+++|++||++|+||+||++|++| |.+..+.++
T Consensus 209 ~d~l~~~~~~~------------~p-lvii~g~S~~-~~~~dl~~i~eia~~~gA~L~VD~AH~~Glig--g~~~~~~~~ 272 (493)
T PRK13580 209 YDEIAALAREF------------KP-LILVAGYSAY-PRRVNFAKLREIADEVGAVLMVDMAHFAGLVA--GKVFTGDED 272 (493)
T ss_pred HHHHHHHHhhc------------CC-EEEEeCcccc-CCCcCHHHHHHHHHHcCCEEEEECchhhceec--cccchhhcC
Confidence 68888887652 23 3444466555 55789999999999999999999999999997 333333332
Q ss_pred CCCCCccEEEeCccchh-ccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 353 IDPREVDILMGTYTKSF-GSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~-G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
.. ..+||+++|++|++ |..||+|++++++++++.. +.+++++++++|..++++.+ +..++++
T Consensus 273 ~~-~~~D~vtgT~hKaL~GP~GG~I~~~~~l~~~L~~-a~P~i~gg~l~p~iAA~avA-l~e~~~~ 335 (493)
T PRK13580 273 PV-PHADIVTTTTHKTLRGPRGGLVLAKKEYADAVDK-GCPLVLGGPLPHVMAAKAVA-LAEARTP 335 (493)
T ss_pred CC-CCCcEEEeCChhhccCCCeEEEEecHHHHHHHhh-CCCcccCCCccHHHHHHHHH-HHHHhCc
Confidence 22 36899999999999 7889999999999999964 56899999999977776665 5555443
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-13 Score=142.36 Aligned_cols=120 Identities=23% Similarity=0.260 Sum_probs=91.4
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.+.+.||+|++.+..|.+.| |++|+++|++||++||+||+++ | +|++|..+ .+++++.| ||+ ||||++
T Consensus 218 ~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~t-g-~gr~g~~~a~~~~~v~p---Di~--t~sK~l 290 (451)
T PRK06918 218 ETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQT-G-FARTGKYFAIEHFDVVP---DLI--TVSKSL 290 (451)
T ss_pred CceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-cCccCceehhHhcCCCC---CEE--eeehhh
Confidence 35788999999988887655 9999999999999999999985 4 45666543 35667654 655 999999
Q ss_pred c--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHH
Q psy2206 370 G--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEG 423 (430)
Q Consensus 370 G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~ 423 (430)
+ .+-|++++++++++.+....+ ..+...+|+.+++++++|+++++++-.+..
T Consensus 291 ~~G~pig~v~~~~~i~~~~~~~~~--~~T~~g~~l~~aaa~a~l~~i~~~~~~~~~ 344 (451)
T PRK06918 291 GAGVPISGVIGRKEIMDESAPGEL--GGTYAGSPLGCAAALAVLDIIEKENLNDRA 344 (451)
T ss_pred cCCCccEEEEEcHHHHhccCCCCc--CcCCCcCHHHHHHHHHHHHHHHHCCHHHHH
Confidence 7 223889999999988764332 345568999999999999999766443333
|
|
| >KOG1404|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.6e-14 Score=139.45 Aligned_cols=118 Identities=22% Similarity=0.242 Sum_probs=100.6
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
...+.+|.|+|.+..|.+.+ |+++.++|+++|.++|.||+++ | ||++|.-+ +|++++.| ||+ |++|++
T Consensus 211 ~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqt-G-fGRtG~~wgfe~h~v~P---DIv--TmAKgi 283 (442)
T KOG1404|consen 211 ETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQT-G-FGRTGHMWGFESHGVVP---DIV--TMAKGI 283 (442)
T ss_pred CceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhh-c-cccccccccccccCCCc---cHH--HHHhhc
Confidence 35788999999999998876 9999999999999999999985 5 79998654 47888876 788 999999
Q ss_pred c--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCc
Q psy2206 370 G--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENG 420 (430)
Q Consensus 370 G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~ 420 (430)
| .+-|+|+.++++.+.+..... +.+|.+.+|+.+++++++|++++++.-.
T Consensus 284 GnG~Pl~AVvtt~EIa~v~~~~~~-~fnTyggnP~a~avg~aVL~Vikee~Lq 335 (442)
T KOG1404|consen 284 GNGFPLGAVVTTPEIADVLNQKSS-HFNTYGGNPVACAVGLAVLKVIKEENLQ 335 (442)
T ss_pred cCCCcceeeecCHHHHHHHHhccc-cccccCCCchhHHHHHHHHHHHHHHhHH
Confidence 6 455788899999999988653 5678889999999999999999887543
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-13 Score=145.12 Aligned_cols=133 Identities=22% Similarity=0.246 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-c
Q psy2206 274 SSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-T 348 (430)
Q Consensus 274 ~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~ 348 (430)
++|+++|++. +.+.+.||+|+|+++.|.+.| |++|+++|++||++||+||+| +| +|++|.++ .
T Consensus 239 ~~l~~~l~~~----------~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~-tG-fGrtG~~fa~ 306 (464)
T TIGR00699 239 EEVEDLIKKW----------HKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQ-TG-VGATGKFWAH 306 (464)
T ss_pred HHHHHHHHhc----------CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeee-eC-CCCCcchhHH
Confidence 4566666542 235789999999999999988 999999999999999999999 77 58988875 4
Q ss_pred eecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCC-cccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 349 EYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSH-VRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 349 e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~-~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
+++|+. .+.||+ ||+|++|. ||++++.+ . +..... .+..|...+|+.+++++++|+++++++-.+..+++
T Consensus 307 e~~gv~-~~PDi~--t~gK~lg~-gG~~~~~~-~---~~~~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~ 377 (464)
T TIGR00699 307 EHWNLD-DPPDMV--TFSKKFQT-AGYFFHDP-A---FRPNKPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHV 377 (464)
T ss_pred HhcCCC-CCCCEE--Eehhhhcc-CCccccch-h---ccCCCCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 888986 234886 99999952 46554443 2 221111 12235567999999999999999877654444433
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >KOG1401|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.3e-13 Score=135.56 Aligned_cols=122 Identities=25% Similarity=0.290 Sum_probs=97.9
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
....||+|++....|.+.. |..|+.+|+++|++||.||++ +| ||+.|.+++ +++++.| ||. |++|.+|
T Consensus 206 ~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~-tG-~gR~g~~~a~e~~~~~P---DI~--t~aK~L~ 278 (433)
T KOG1401|consen 206 EIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQ-TG-LGRLGYGWAQEYFGVTP---DIT--TVAKPLG 278 (433)
T ss_pred ceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhh-hC-ccccchHHHHHHhCcCC---cce--eehhhcc
Confidence 4678999999988777654 999999999999999999998 56 688888776 7899887 777 9999995
Q ss_pred --cccceeecCHHHHHHHHhcCC-cccccCCCcHHHHHHHHHHHHHHHccCCchHHH
Q psy2206 371 --SMGGYVAGSKSTIDYIRANSH-VRSYATSMPPPVAMQILTSMRIIMGLENGDEGN 424 (430)
Q Consensus 371 --~~GG~v~gs~~li~~l~~~~~-~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~ 424 (430)
++-|+..++.++++.+....+ .+-.|.+.+|+.|.++..+|+.+.+........
T Consensus 279 gGlPigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLacsa~~~~l~~l~~~e~~k~vs 335 (433)
T KOG1401|consen 279 GGLPIGATGVRDKVAEMISPGDHLYHGGTFSGNPLACSAGIKVLDELKDPETLKNVS 335 (433)
T ss_pred CCceeEEEeehHHHHhhcCCCCccccCcccCCChhhhhHHHHHHHHHcCHHHHHHHH
Confidence 555788899999999887544 112355679999999999999998775544433
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-13 Score=143.14 Aligned_cols=124 Identities=18% Similarity=0.170 Sum_probs=92.9
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.+.+.||+|+|+++.|.+.| |++|+++|++||++||+||+++ | +|++|.+++ +++++.| ||+ +|+|++
T Consensus 224 ~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~t-G-fGRtG~~~a~~~~gv~P---Div--~~gK~l 296 (443)
T PRK08297 224 HDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQT-G-VGLTGTAWAYQQLGVRP---DIV--AFGKKT 296 (443)
T ss_pred CcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhh-c-cCccchHHHHHhcCCCC---CEE--Eecccc
Confidence 46889999999999998854 9999999999999999999995 6 688888764 7788876 787 899998
Q ss_pred ccccceeecCHHHHHHHHh-c--CCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 370 GSMGGYVAGSKSTIDYIRA-N--SHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 370 G~~GG~v~gs~~li~~l~~-~--~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
+ .||++.++ ++.+.... . ...+..|.+.+|+.+++++++|+++++++-.+..++..
T Consensus 297 ~-~~a~l~~~-~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g 355 (443)
T PRK08297 297 Q-VCGIMAGR-RVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEEDGLVENAARQG 355 (443)
T ss_pred c-ccceecch-HHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6 46666654 33322211 1 11123455689999999999999998776554444443
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.9e-13 Score=135.51 Aligned_cols=95 Identities=26% Similarity=0.364 Sum_probs=71.3
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHH---HHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRL---KNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~L---a~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+.+|+++++++|+|.+.+.+++.++ |++|+++||+||+|+..+++..+.... ...+......|+++||||+||++|
T Consensus 149 ~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~-~~~~~~~~~vi~~~S~SK~~g~~G 227 (363)
T PF00155_consen 149 PKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFGDPDFGPI-RSLLDEDDNVIVVGSLSKSFGLPG 227 (363)
T ss_dssp EEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSSSSHTHHH-HGHHTTTSTEEEEEESTTTTTSGG
T ss_pred cceeeecccccccccccccccccchhhhhcccccceeeeeceeccccCCCccCcc-cccccccccceeeeeccccccccc
Confidence 5688899999999999885555555 999999999999999887775432211 111221122699999999999999
Q ss_pred ---ceeecCHHHHHHHHhcCCc
Q psy2206 374 ---GYVAGSKSTIDYIRANSHV 392 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~~~ 392 (430)
||+++++++++.++.....
T Consensus 228 lRvG~i~~~~~~~~~l~~~~~~ 249 (363)
T PF00155_consen 228 LRVGYIVAPPELIERLRRFQRS 249 (363)
T ss_dssp GTEEEEEEEHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhhhhcccc
Confidence 9999999999999875543
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.7e-13 Score=138.75 Aligned_cols=126 Identities=21% Similarity=0.235 Sum_probs=92.5
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.+...||+|+|.++.|.+.| |++|+++|++||++||+||+++ | +|++|.++ .+++++.| ||+ +++|++
T Consensus 217 ~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-G-~GrtG~~~a~~~~gv~P---Di~--~~gK~~ 289 (431)
T TIGR03251 217 HDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQT-G-VGLTGTAWAYQQLGVQP---DIV--AFGKKT 289 (431)
T ss_pred CcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchh-c-cCccchHHHHHhcCCCC---CEE--EecccC
Confidence 46889999999999998764 9999999999999999999996 6 58888775 47888876 787 899997
Q ss_pred ccccceeecCH--HHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 370 GSMGGYVAGSK--STIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 370 G~~GG~v~gs~--~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
..||++.+.+ ++.+.+......+..|.+.+|+.+++++++|+++++++-.+..+++.+
T Consensus 290 -~~~g~~~~~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~ 349 (431)
T TIGR03251 290 -QVCGIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGA 349 (431)
T ss_pred -ccceEEecchHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4567776543 222211110111223445789999999999999987765445555444
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.1e-12 Score=140.18 Aligned_cols=135 Identities=16% Similarity=0.189 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCceEEEEEcCc-cCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc
Q psy2206 274 SSLEAGLQKALLEGQPHSGKPWRKILIVVEGI-FSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT 348 (430)
Q Consensus 274 ~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v-~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~ 348 (430)
+.+++.|++.... ..+.+.+.||+|+| .+..|.+.| +++|+++|++||++||+||+. +| ||++|+.++
T Consensus 567 ~~le~~l~~~~~~-----~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~-TG-fGRtG~~fa 639 (817)
T PLN02974 567 SYIEQQLDEYEAS-----AKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVF-TG-LWRLGVESA 639 (817)
T ss_pred HHHHHHHHhhccc-----cCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecc-cC-CCcccchhh
Confidence 5577776542100 01246889999996 787787765 999999999999999999998 56 799998764
Q ss_pred -eecCCCCCCccEEEeCccchhc---cccceeecCHHHHHHHHhc----CCcccccCCCcHHHHHHHHHHHHHHHccCCc
Q psy2206 349 -EYFGIDPREVDILMGTYTKSFG---SMGGYVAGSKSTIDYIRAN----SHVRSYATSMPPPVAMQILTSMRIIMGLENG 420 (430)
Q Consensus 349 -e~~g~~~~~~dIv~~TlSKa~G---~~GG~v~gs~~li~~l~~~----~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~ 420 (430)
+++|+.| ||+ +++|+++ .+-|.+++++++.+.+... ...+.+|.+.+|+.||+++++|+++++++-.
T Consensus 640 ~e~~gv~P---DIi--~~gKgLtgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~~~~~~~~~ 714 (817)
T PLN02974 640 WELLGCKP---DIA--CYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQWYKDPSTN 714 (817)
T ss_pred HHhcCCCC---CEE--eecccccCCCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHHHHHcccHH
Confidence 7889876 788 9999995 2446678899999988521 1123456778999999999999999887533
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.5e-12 Score=131.20 Aligned_cols=107 Identities=21% Similarity=0.225 Sum_probs=90.0
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhc----c
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG----S 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G----~ 371 (430)
++++|++|++.|++|.+.|+++|+++|++||+++|+||+|+.|++.. ++. ..+||+++|++|.+| .
T Consensus 135 ~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~~---------pl~-~gaDivv~S~tK~l~G~~d~ 204 (377)
T TIGR01324 135 NTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFK---------PLE-HGVDISIQAGTKYLVGHSDI 204 (377)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccC---------ccc-cCceEEEecCceeccCCCCc
Confidence 46799999999999999999999999999999999999999887542 122 356999999999997 4
Q ss_pred ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.||+++++++.++.++.. ...++..++|..++.++.+++.+
T Consensus 205 ~gG~v~~~~~~~~~l~~~--~~~~G~~l~p~~a~~~~rgl~tl 245 (377)
T TIGR01324 205 MIGTVVANARTWDQLREH--SYLMGQMVDADDAYTTLRGLRTL 245 (377)
T ss_pred eEEEEEeCHHHHHHHHHH--HHHhCCCCCHHHHHHHHhhhhhH
Confidence 579999999888877743 34568889999999998888776
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-12 Score=131.94 Aligned_cols=107 Identities=24% Similarity=0.300 Sum_probs=85.7
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|++|+++||+|.+.|+++|+++|++||++|++||+|+.+++.. .+. ..+||++.|++|.+|.
T Consensus 125 ~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~~~---------~~~-~g~Divv~S~tK~l~g~~~~ 194 (369)
T cd00614 125 ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQR---------PLE-LGADIVVHSATKYIGGHSDV 194 (369)
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhcCC---------hhh-hCCcEEEeccceeccCCCCc
Confidence 35689999999999999999999999999999999999998775421 111 2468999999999973
Q ss_pred ccceeecCH-HHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAGSK-STIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~gs~-~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.||++++++ ++++.++..... +++.++|..+++++.+|+.+
T Consensus 195 ~gG~v~~~~~~l~~~l~~~~~~--~g~~~~p~~a~~~l~~l~tl 236 (369)
T cd00614 195 IAGVVVGSGEALIQRLRFLRLA--LGTILSPFDAWLLLRGLKTL 236 (369)
T ss_pred eEEEEEeCcHHHHHHHHHHHHh--hCCCCCHHHHHHHHcCCCCH
Confidence 479999987 888888865432 56678899888877766543
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >KOG0257|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.8e-12 Score=129.22 Aligned_cols=119 Identities=19% Similarity=0.280 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC-CCccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT-GRGVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~-GrG~~ 348 (430)
+++||.++.+ ++++||+.++.+++|.+.+ |++|++||++||+++|.||+|...++.+. ..-++
T Consensus 162 ~~~le~~~t~-------------kTk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~a 228 (420)
T KOG0257|consen 162 PEELESKITE-------------KTKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIA 228 (420)
T ss_pred hHHHHhhccC-------------CccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeee
Confidence 7889888765 5789999999999999998 99999999999999999999998887543 22334
Q ss_pred eecCCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHH
Q psy2206 349 EYFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQI 407 (430)
Q Consensus 349 e~~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaa 407 (430)
...|+ .++.|.++|+||+||++| ||+++++.++..+...+...+|++ .+|.+.|.+
T Consensus 229 slPgm--~ertitvgS~gKtf~~TGWrlGW~igp~~L~~~~~~vh~~~~~~~-~Tp~q~A~a 287 (420)
T KOG0257|consen 229 SLPGM--YERTITVGSFGKTFGVTGWRLGWAIGPKHLYSALFPVHQNFVFTC-PTPIQEASA 287 (420)
T ss_pred cCCch--hheEEEeccccceeeeeeeeeeeeechHHhhhhHHHHhhcccccc-CcHHHHHHH
Confidence 34555 477899999999999999 999999999999988766666654 445554433
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.5e-12 Score=130.27 Aligned_cols=109 Identities=17% Similarity=0.226 Sum_probs=88.0
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc---
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM--- 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~--- 372 (430)
++++|++|++.||+|.+.|+++|+++|++||+++|+||+|+.++++. . +. ...||++.|++|.+|+.
T Consensus 144 ~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~~---~------~~-~g~Divv~S~sK~lgg~g~~ 213 (391)
T TIGR01328 144 NTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTN---P------VA-LGVDVVVHSATKYIGGHGDV 213 (391)
T ss_pred CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhccCC---c------hh-cCCCEEEccccccccCCCCc
Confidence 46789999999999999999999999999999999999998776532 1 11 24589999999999854
Q ss_pred -cceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 373 -GGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 373 -GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
||++++++++++.++.......++..++|..++.++..|+.+
T Consensus 214 ~gG~v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~tl 256 (391)
T TIGR01328 214 VAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKTL 256 (391)
T ss_pred eEEEEEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCcH
Confidence 589999999999888644333446678999998888877554
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=7e-12 Score=129.84 Aligned_cols=119 Identities=13% Similarity=0.238 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhc--CcEEEEeccccccccCCCCCcccee
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKY--KAYLYVDEAHSIGALGPTGRGVTEY 350 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y--~~~LivDEAh~~G~lG~~GrG~~e~ 350 (430)
+++|++++.+ ++++|++|++.||+|.+.|+++|.++|++| |++||+||+|+.++++. .
T Consensus 139 ~e~l~~~i~~-------------~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~---~---- 198 (400)
T PRK06234 139 LEEVRNALKA-------------NTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQR---P---- 198 (400)
T ss_pred HHHHHHHhcc-------------CCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCC---c----
Confidence 5666666643 356899999999999999999999999997 99999999998776531 1
Q ss_pred cCCCCCCccEEEeCccchhccc----cceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 351 FGIDPREVDILMGTYTKSFGSM----GGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 351 ~g~~~~~~dIv~~TlSKa~G~~----GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
+. ..+||++.|+||.+++. ||++++++++++.++.......++..++|..++.++..|+.+
T Consensus 199 --l~-~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~tl 263 (400)
T PRK06234 199 --LQ-LGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKTL 263 (400)
T ss_pred --hh-hCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcH
Confidence 11 24689999999999864 499999999999887644333457789999999888877644
|
|
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.8e-11 Score=125.91 Aligned_cols=128 Identities=13% Similarity=0.242 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.|++.... + ..++++|+++++++++|.+.|+++|.++|++||+++++|+||+.|.++-.+. .+
T Consensus 141 ~~~l~~~l~~~~~~-----~-~~~~~lV~l~~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~~----~~- 209 (387)
T PRK09331 141 PEAYAEKIEEVKEE-----T-GKPPALALLTHVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGK----KL- 209 (387)
T ss_pred HHHHHHHHHHhhhc-----c-CCCCEEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCHH----Hc-
Confidence 78888888652100 0 0145688899999999999999999999999999999999999876543221 12
Q ss_pred CCCCCccEEEeCccchhcccc--ceeecCHHHHHHHHhcCCccc------ccCCCcHHHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGSMG--GYVAGSKSTIDYIRANSHVRS------YATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G--G~v~gs~~li~~l~~~~~~~~------~s~s~~P~~~aaalaaL~~l~ 415 (430)
++|++++|++|++++++ |++++++++++.++....++. +++++++..+++++++++.+.
T Consensus 210 ----g~D~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aal~~~~ 276 (387)
T PRK09331 210 ----GADFIVGSGHKSMAASAPSGVLATTEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMASFPHVV 276 (387)
T ss_pred ----CCCEEEeeCcccccCCCCEEEEEECHHHHhhcccccCCCcccceeeeceecCchHHHHHHHHHHHHH
Confidence 45899999999997654 899999999998876544332 333444444444555665543
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-11 Score=127.93 Aligned_cols=113 Identities=19% Similarity=0.299 Sum_probs=87.0
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC-CCccceecCCCCCCccEEEeCccchhcc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT-GRGVTEYFGIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~-GrG~~e~~g~~~~~~dIv~~TlSKa~G~ 371 (430)
++++|++.++.|++|.+.+ |++|+++|++||++||.||+|.--+++.. ...+++..+. .+..|.++||||++++
T Consensus 163 ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~--~~~~i~i~s~SK~~~m 240 (393)
T COG0436 163 KTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGA--RDRTITINSFSKTYGM 240 (393)
T ss_pred cceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCC--cceEEEEecccccccc
Confidence 5779999999999999997 99999999999999999999998777542 3333433332 3568999999999999
Q ss_pred cc---ceeecC-HHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 372 MG---GYVAGS-KSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 372 ~G---G~v~gs-~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
+| ||++++ +++++.+.... .++.+++..+.+.+ +.++|+
T Consensus 241 tGwRvG~~v~~~~~l~~~~~~~~-~~~~~~~~~~~Q~a-a~~aL~ 283 (393)
T COG0436 241 TGWRIGWVVGPPEELIAALRKLK-SYLTSCAPTPAQYA-AIAALN 283 (393)
T ss_pred cccceeEeecChHHHHHHHHHHH-HhcccCCCHHHHHH-HHHHhc
Confidence 99 999999 88998887433 34445555555554 555555
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.2e-11 Score=121.90 Aligned_cols=105 Identities=18% Similarity=0.164 Sum_probs=76.6
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc---
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG--- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G--- 373 (430)
+++|++..+.+++|.+.|++++.++|+++|+++|+||+|... .+.....+... .+..|+++||||++|++|
T Consensus 159 ~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~-~~~~~~~~~~~-----~~~vi~~~S~SK~~g~~GlRi 232 (361)
T PRK00950 159 TKVIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEF-AEYDYTPLALE-----YDNLIIGRTFSKVFGLAGLRI 232 (361)
T ss_pred CCEEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhh-CccchHHHHHh-----cCCEEEEEeehHhhcCchhhc
Confidence 456677799999999999999999999999999999999632 22211111111 123588999999999999
Q ss_pred ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.++.....+ + .+++..+++.+++
T Consensus 233 G~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~a~~~l 266 (361)
T PRK00950 233 GYGFVPEWLIDYYMRAKTPF--S--LTRLSQAAAIAAL 266 (361)
T ss_pred chhcCCHHHHHHHHHhcCCC--C--CCHHHHHHHHHHh
Confidence 99999999999888755432 2 3444444445554
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.2e-11 Score=120.79 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=78.8
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhc--CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKY--KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y--~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
++++|++..+.+++|.+.++++|.++++.+ ++++|+||+|....++..........+. .+..|+++||||+||++|
T Consensus 154 ~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~g~~G 231 (367)
T PRK02731 154 RTRLVFIANPNNPTGTYLPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAK--FPNVVVTRTFSKAYGLAG 231 (367)
T ss_pred CCcEEEEeCCCCCCCcCCCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhh--cCCEEEEeeehHhhcCcc
Confidence 345777889999999999999999999875 8999999999866553211111222222 234789999999999988
Q ss_pred ---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 ---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.+......+ . .+++..+++.+.|
T Consensus 232 ~RiG~l~~~~~~~~~l~~~~~~~--~--~~~~~~~~a~~~l 268 (367)
T PRK02731 232 LRVGYGIAPPEIIDALNRVRQPF--N--VNSLALAAAVAAL 268 (367)
T ss_pred cceeeeeCCHHHHHHHHHccCCC--C--CCHHHHHHHHHHh
Confidence 99999999999988754332 2 2344444444444
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=9.2e-12 Score=128.06 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhhhcccC---CcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHH
Q psy2206 47 VLFYSRYVYRRIVDCFN---RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESV 123 (430)
Q Consensus 47 e~~~~r~l~~r~~d~~~---rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al 123 (430)
..++.+.+..+-.+++. +.+.+.++..+.+.+ ++++||+|||||||+ +||.+++++++++
T Consensus 4 ~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~~----------------~~~~nf~SNdYLGLa-~~~~~~~a~~~~~ 66 (388)
T COG0156 4 LSFLRQALQALKAEGLYRGLRALDRRQGLAIRADG----------------RKVLNFCSNDYLGLA-SHPELIEAAKAAI 66 (388)
T ss_pred HHHHHHHHHHHHhhccccchhhccccCCcceecCC----------------ceeEeeeccCccccc-CCHHHHHHHHHHH
Confidence 33444444333333333 445566666665543 489999999999999 6999999999999
Q ss_pred hhhCCccccCCcccccc
Q psy2206 124 KQSGCALCSPSGEIASM 140 (430)
Q Consensus 124 ~~yG~gs~~sr~~~g~~ 140 (430)
++||+|+||||++.||+
T Consensus 67 ~~~g~g~~gsR~i~G~~ 83 (388)
T COG0156 67 RRYGVGAGGSRLISGTS 83 (388)
T ss_pred HHhCCCCCCcCcccCCc
Confidence 99999999999999998
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.1e-11 Score=120.92 Aligned_cols=86 Identities=19% Similarity=0.262 Sum_probs=69.2
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc--c
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM--G 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~--G 373 (430)
++++|++..+.+++|.+.|+++|.++|++||++|++||||+.|.+.-.+ .. .++|+++.|++|+++++ +
T Consensus 139 ~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~----~~-----~~~d~~~~s~~K~l~~~~~~ 209 (361)
T cd06452 139 PPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSG----KE-----LGADFIVGSGHKSMAASAPI 209 (361)
T ss_pred CceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCCCH----HH-----cCCCEEEecCCccccCCCCe
Confidence 3567888899999999999999999999999999999999866432111 11 13589999999999754 3
Q ss_pred ceeecCHHHHHHHHhcC
Q psy2206 374 GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 374 G~v~gs~~li~~l~~~~ 390 (430)
||+++++++++.++...
T Consensus 210 G~l~~~~~~~~~l~~~~ 226 (361)
T cd06452 210 GVLATTEEWADIVFRTS 226 (361)
T ss_pred EEEEECHHHHHHHhccc
Confidence 89999999999887643
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.5e-11 Score=119.85 Aligned_cols=110 Identities=14% Similarity=0.174 Sum_probs=78.9
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHh--cCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNK--YKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~--y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
++++|+++.+.+++|.+.+.++|.++++. +|+++|+||+|....++..........+. .+.+|+++||||+||++|
T Consensus 151 ~~~~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~~vi~~~S~SK~~g~~G 228 (359)
T PRK03158 151 QTKIVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEK--YENLIVLRTFSKAYGLAA 228 (359)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHh--cCCEEEEEechHhhcCcc
Confidence 34567778999999999999999999877 59999999999765543211111111111 234799999999999999
Q ss_pred ---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 ---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.+...... + ..+++..+++.++|
T Consensus 229 lRiG~~v~~~~~~~~~~~~~~~--~--~~~~~~q~~~~~~l 265 (359)
T PRK03158 229 LRVGYGIASEELIEKLNIARPP--F--NTTRIAQYAAIAAL 265 (359)
T ss_pred hhhehhcCCHHHHHHHHHhcCC--C--CCCHHHHHHHHHHh
Confidence 9999999999988875432 2 24555555555555
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.23 E-value=2e-11 Score=127.23 Aligned_cols=105 Identities=18% Similarity=0.296 Sum_probs=81.0
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc----
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM---- 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~---- 372 (430)
+++|++|++.||+|.+.++++|+++|++||++||+||+|+.+.+.+ . .+ ..||+++||||++++.
T Consensus 164 tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~~~~-----~-~~-----g~divv~S~SK~l~g~g~~~ 232 (418)
T PLN02242 164 TKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMVLSP-----A-RL-----GADVVVHSISKFISGGADII 232 (418)
T ss_pred CEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccCCCH-----H-Hc-----CCcEEEEeCccccCCCCCce
Confidence 6789999999999999999999999999999999999997543321 1 11 3589999999999754
Q ss_pred cceeecCHHHHHHHHhcCCc--ccccCCCcHHHHHHHHHHHH
Q psy2206 373 GGYVAGSKSTIDYIRANSHV--RSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 373 GG~v~gs~~li~~l~~~~~~--~~~s~s~~P~~~aaalaaL~ 412 (430)
|||+++++++++.++..... ...+..++|..++.++..++
T Consensus 233 gG~iv~~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l~ 274 (418)
T PLN02242 233 AGAVCGPAELVNSMMDLHHGALMLLGPTMNPKVAFELSERLP 274 (418)
T ss_pred EEEEEcCHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcCCC
Confidence 69999999999988865432 23455566777766555433
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-11 Score=125.78 Aligned_cols=118 Identities=19% Similarity=0.285 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++++ .++++|++|++.||+|.+.|+++|+++|++||++||+||+|+.++... +
T Consensus 126 ~~~l~~~i~~------------~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~---~------ 184 (385)
T PRK08574 126 TEDIIEAIKE------------GRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYR---P------ 184 (385)
T ss_pred HHHHHHhcCc------------cCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCC---h------
Confidence 5667666543 135688899999999999999999999999999999999998775421 1
Q ss_pred CCCCCccEEEeCccchhcc----ccc-eeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGS----MGG-YVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~----~GG-~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
+. .++||++.|++|.++. .|| ++++++++++.++.... .++..++|..++.++..|+.+
T Consensus 185 l~-~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~--~~g~~~~p~~a~l~l~~l~tL 248 (385)
T PRK08574 185 LR-HGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRR--RLGTIMQPFEAYLVLRGLKTL 248 (385)
T ss_pred hh-hCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHH--hcCCCCCHHHHHHHHcccCcH
Confidence 11 2468999999999974 467 56668888887775432 257778999888888877766
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.8e-11 Score=122.93 Aligned_cols=123 Identities=24% Similarity=0.293 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+.+ ++++|+++.+.+++|.+.|+++|.++|++||+++++||+|..|. +. ..
T Consensus 146 ~~~l~~~i~~-------------~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~------~~---~~ 203 (397)
T TIGR01976 146 PDDLASLLSP-------------RTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPH------GL---ID 203 (397)
T ss_pred HHHHHHhcCC-------------CceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccc------cC---CC
Confidence 5666666542 35789999999999999999999999999999999999996442 11 11
Q ss_pred CCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccc--------cCCCcHHHHHHHHHHHHHHHcc
Q psy2206 353 IDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSY--------ATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~--------s~s~~P~~~aaalaaL~~l~~~ 417 (430)
+....+|+++.|++|.+|...|++++++++++.+......+.+ +++.+...+++..++++.+.+.
T Consensus 204 ~~~~~~d~~~~s~~K~~g~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~~~~ 276 (397)
T TIGR01976 204 VQATGADFLTCSAYKFFGPHMGILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYLAGL 276 (397)
T ss_pred HHHcCCCEEEEechhhcCCceEEEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHHHHh
Confidence 2212468999999999998789999999998877653322222 2234555666677888888654
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.3e-11 Score=122.33 Aligned_cols=107 Identities=21% Similarity=0.283 Sum_probs=83.6
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|++|++.||+|.+.|+++|+++|++||+++|+||+|+.++.. . .+. ...||++.|+||+++.
T Consensus 130 ~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~~---~------~l~-~~~divv~S~sK~l~G~~~~ 199 (376)
T PRK06460 130 RYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPINQ---K------PLE-LGADIVVHSASKFLAGHNDV 199 (376)
T ss_pred CceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCccccC---C------hhh-cCCCEEEeecceeccCCCCc
Confidence 4568999999999999999999999999999999999999754311 1 111 2458999999999963
Q ss_pred ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.+|++++++++++.++..... ++.+++|..++.++..++.+
T Consensus 200 ~~G~~~~~~~l~~~l~~~~~~--~g~~~~~~~a~~~l~~~~~l 240 (376)
T PRK06460 200 IAGLAAGYGKLLNVIDQMRRT--LGTSLDPHAAYLTLRGIKTL 240 (376)
T ss_pred eEEEEecCHHHHHHHHHHHHh--cCCCCCHHHHHHHHhchhhH
Confidence 479999999999988764433 45557777777776666555
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.9e-11 Score=123.64 Aligned_cols=108 Identities=17% Similarity=0.202 Sum_probs=84.2
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc---
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM--- 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~--- 372 (430)
++++|++|++.||+|.+.|+++|.++|+++|++|++||+|+.+.++. . +. ..+|+++.|+||.++..
T Consensus 146 ~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~---p------l~-~g~Div~~S~sK~l~g~g~~ 215 (386)
T PRK06767 146 NTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQR---P------LE-LGCDAVVHSATKYIGGHGDV 215 (386)
T ss_pred CceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccccCC---c------hh-cCCcEEEecCcceecCCCCc
Confidence 46789999999999999999999999999999999999998665431 1 11 24589999999999765
Q ss_pred -cceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 373 -GGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 373 -GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
||+++++++.++.+....+. .+.+.++|..+++++.+|+.+
T Consensus 216 ~gG~v~~~~~~i~~~~~~~~~-~~g~~~~~~~a~l~~~~L~tl 257 (386)
T PRK06767 216 VAGVTICKTRALAEKIRPMRK-DIGGIMAPFDAWLLLRGLKTL 257 (386)
T ss_pred eeEEEEeChHHHHHHHHHHHH-HhCCCCCHHHHHHHHcCCCcH
Confidence 69999999988776543322 234567888888777776644
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.1e-11 Score=123.61 Aligned_cols=134 Identities=18% Similarity=0.272 Sum_probs=98.6
Q ss_pred HHHHHhCCCCCCC--CCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccc
Q psy2206 258 ESVKQSGCALCSP--SAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAH 335 (430)
Q Consensus 258 ~ai~~yG~g~~~s--r~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh 335 (430)
..+..+|...... ..+++|++++++ ++++|++|++.+++|.+.|+++|+++|++||++||+|++|
T Consensus 123 ~~~~~~G~~v~~vd~~d~~~l~~~i~~-------------~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~ 189 (403)
T PRK07503 123 HGLGEFGVTVRHVDLTDPAALKAAISD-------------KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTY 189 (403)
T ss_pred HHHhhCCEEEEEeCCCCHHHHHHhcCc-------------cCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCC
Confidence 3455566432111 125666666543 3568888999999999999999999999999999999999
Q ss_pred cccccCCCCCccceecCCCCCCccEEEeCccchhccc----cceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 336 SIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM----GGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 336 ~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~----GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
+.+..+. - .+ ...||++.|++|.+|.. ||++++++++++.++........+..++|..++.++..|
T Consensus 190 a~~~~~~---~----l~---~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L 259 (403)
T PRK07503 190 CTPYLQR---P----LE---LGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRGL 259 (403)
T ss_pred cccccCC---c----hh---hCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCc
Confidence 8764321 1 11 24589999999999864 589999999998887432222346778999999888888
Q ss_pred HHH
Q psy2206 412 RII 414 (430)
Q Consensus 412 ~~l 414 (430)
+.+
T Consensus 260 ~tl 262 (403)
T PRK07503 260 KTL 262 (403)
T ss_pred chH
Confidence 766
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=5.5e-11 Score=123.19 Aligned_cols=107 Identities=21% Similarity=0.254 Sum_probs=86.9
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|++|.+.+++|.+.|+++|+++|++||++||+||+|+.++... .+. ..+|+++.|+||.+|.
T Consensus 149 ~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~---------~l~-~~~Divv~S~sK~l~g~~~~ 218 (398)
T PRK08249 149 GCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQN---------PLA-LGADLVIHSATKFLSGHADA 218 (398)
T ss_pred CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccCC---------chh-hCCCEEeccCceecCCCCCc
Confidence 45689999999999999999999999999999999999998664321 111 2468999999999974
Q ss_pred ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.||++++++++++.++.... ..+..++|..++.+++.++.+
T Consensus 219 ~gG~vv~~~~l~~~l~~~~~--~~g~~~s~~~a~l~l~~l~tL 259 (398)
T PRK08249 219 LGGVVCGSKELMEQVYHYRE--INGATMDPMSAYLILRGMKTL 259 (398)
T ss_pred eEEEEECCHHHHHHHHHHHH--hcCCCCCHHHHHHHHhCcchH
Confidence 57999999999988876432 246678999999888887776
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-10 Score=121.20 Aligned_cols=111 Identities=15% Similarity=0.226 Sum_probs=80.6
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++.++.+++|.+.+ +++|+++|++|+++||+||+|....++.....+.+..+. .+..|+++||||+||++|
T Consensus 188 ~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~--~~~vi~i~SfSK~~~~~G 265 (413)
T PLN00175 188 TRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGM--YERTVTMNSLGKTFSLTG 265 (413)
T ss_pred ceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCC--cCcEEEEecchhhccCcc
Confidence 457778899999999886 888999999999999999999877665332333333232 245799999999999999
Q ss_pred ---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 ---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.++.......+ +.+++...++.++|
T Consensus 266 ~RiG~~v~~~~l~~~l~~~~~~~~~--~~s~~~Q~a~~~~l 304 (413)
T PLN00175 266 WKIGWAIAPPHLTWGVRQAHSFLTF--ATATPMQWAAVAAL 304 (413)
T ss_pred hheeeeEeCHHHHHHHHHHHhhccC--CCCHHHHHHHHHHH
Confidence 9999999999988764422222 23333444444555
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-10 Score=118.92 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCC-ccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGR-GVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr-G~~e~~ 351 (430)
+++|++++++. +..+|+++++++|+|.+.+++++.+|++.++++||+||+|+. ++..|. ......
T Consensus 149 ~~~l~~~~~~~------------~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~--~~~~~~~~~~~~~ 214 (368)
T PRK03317 149 VDAAVAAIAEH------------RPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAE--FRRSGTPSALTLL 214 (368)
T ss_pred HHHHHHHHhcc------------CCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchh--hcccCCcCHHHHH
Confidence 56777776541 233566678999999999999999999999999999999974 332332 222222
Q ss_pred CCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 352 GIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
+.. ...|+++||||+||++| ||+++++++++.++....+ + ..+++.++++.++|+.
T Consensus 215 ~~~--~~~i~~~SfSK~~g~~GlRiG~~~~~~~~~~~l~~~~~~--~--~~s~~~~~a~~~~l~~ 273 (368)
T PRK03317 215 PEY--PRLVVSRTMSKAFAFAGGRLGYLAAAPAVVDALRLVRLP--Y--HLSAVTQAAARAALRH 273 (368)
T ss_pred HhC--CCEEEEEechhhhccchhhhhhhhCCHHHHHHHHhcCCC--C--CCCHHHHHHHHHHhhC
Confidence 222 23688999999999999 9999999999999875432 2 3456666666666653
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.5e-11 Score=121.78 Aligned_cols=135 Identities=21% Similarity=0.266 Sum_probs=98.1
Q ss_pred HHHHHHHhCCCCCCCC--CHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEec
Q psy2206 256 SKESVKQSGCALCSPS--APSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDE 333 (430)
Q Consensus 256 ~~~ai~~yG~g~~~sr--~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDE 333 (430)
..+.+.++|....-.. .+++|++.+++ ++++|++|++.++.|.+.|+++|.++|+++|++||+||
T Consensus 110 ~~~~~~~~g~~v~~v~~~d~~~l~~~i~~-------------~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~ 176 (380)
T TIGR01325 110 ISEILPRFGIEVSFVDPTDLNAWEAAVKP-------------NTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDN 176 (380)
T ss_pred HHHHHHHhCCEEEEECCCCHHHHHHhcCC-------------CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEEC
Confidence 3445666776432211 14555554432 46789999999999999999999999999999999999
Q ss_pred cccccccCCCCCccceecCCCCCCccEEEeCccchhcc----ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHH
Q psy2206 334 AHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS----MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILT 409 (430)
Q Consensus 334 Ah~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~----~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaala 409 (430)
+|+.+++.. ++. ...||++.|++|.++. .||++++++++++.++..... ++..++|..++.++.
T Consensus 177 a~~~~~~~~---------pl~-~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~--~g~~~~p~~a~~~l~ 244 (380)
T TIGR01325 177 VFATPVLQQ---------PLK-LGADVVVYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRH--TGPAMSPFNAWVLLK 244 (380)
T ss_pred CCcccccCC---------chh-hCCCEEEeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHh--hCCCCCHHHHHHHHh
Confidence 997654321 111 2458999999999974 469999999998887764332 456678888888887
Q ss_pred HHHHHH
Q psy2206 410 SMRIIM 415 (430)
Q Consensus 410 aL~~l~ 415 (430)
.++.+.
T Consensus 245 ~l~tl~ 250 (380)
T TIGR01325 245 GLETLS 250 (380)
T ss_pred ccCcHH
Confidence 776663
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-10 Score=116.85 Aligned_cols=107 Identities=20% Similarity=0.241 Sum_probs=70.8
Q ss_pred EEEEE-cCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchh-ccccce
Q psy2206 298 ILIVV-EGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSF-GSMGGY 375 (430)
Q Consensus 298 ~lIi~-E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~-G~~GG~ 375 (430)
++|++ .+.+ |...|+++|.++|++||++|++||+|..|.++. |... ..+. .+|++++|+||+| |..||+
T Consensus 163 ~~v~~~~~~~---~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~---g~~~-~~~~--~~dv~~~s~sK~l~G~~gg~ 233 (402)
T cd00378 163 KLIVAGASAY---PRPIDFKRFREIADEVGAYLLVDMAHVAGLVAG---GVFP-NPLP--GADVVTTTTHKTLRGPRGGL 233 (402)
T ss_pred CEEEecCccc---CCCcCHHHHHHHHHhcCCEEEEEccchhhhhhc---ccCC-Cccc--CCcEEEeccccCCCCCCceE
Confidence 34444 5443 566799999999999999999999997776432 2111 1111 3589999999999 667899
Q ss_pred eecCH-HHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 376 VAGSK-STIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 376 v~gs~-~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
+++++ ++++.++....+..++++..+. .+++..++..+
T Consensus 234 i~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~a~~~al~~~ 272 (402)
T cd00378 234 ILTRKGELAKKINSAVFPGLQGGPHLHV-IAAKAVALKEA 272 (402)
T ss_pred EEeccHHHHHHHHHHhCccccCCchHHH-HHHHHHHHHHH
Confidence 88876 8999887755444444433333 33333344433
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.4e-11 Score=121.09 Aligned_cols=136 Identities=16% Similarity=0.193 Sum_probs=97.0
Q ss_pred HHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEE
Q psy2206 254 ERSKESVKQSGCALCSPS--APSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYV 331 (430)
Q Consensus 254 ~a~~~ai~~yG~g~~~sr--~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~Liv 331 (430)
....+.+.++|....-.. .++++++++++ ++++|++|++.+++|.+.|+++|+++|++||++||+
T Consensus 115 ~~~~~~~~~~G~~v~~vd~~d~~~l~~~i~~-------------~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~liv 181 (390)
T PRK08133 115 SLFEKIFARFGIETTFVDLTDLDAWRAAVRP-------------NTKLFFLETPSNPLTELADIAALAEIAHAAGALLVV 181 (390)
T ss_pred HHHHHHHHHcCcEEEEECCCCHHHHHHhcCc-------------CCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEE
Confidence 334455666775432221 25667666542 467899999999999999999999999999999999
Q ss_pred eccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHH
Q psy2206 332 DEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS----MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQI 407 (430)
Q Consensus 332 DEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~----~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaa 407 (430)
||+|+.+++.. . +. ..+||++.|+||.++. .||++++++++++.+....+. .+..++|..++.+
T Consensus 182 D~t~~~~~~~~---p------l~-~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~--~g~~~~~~~a~~~ 249 (390)
T PRK08133 182 DNCFCTPALQQ---P------LK-LGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRT--AGPTLSPFNAWVF 249 (390)
T ss_pred ECCCcccccCC---c------hh-hCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHHH--hCCCCCHHHHHHH
Confidence 99997665421 1 11 2358999999999975 469999998887766543222 3456788888777
Q ss_pred HHHHHHH
Q psy2206 408 LTSMRII 414 (430)
Q Consensus 408 laaL~~l 414 (430)
+..++.+
T Consensus 250 l~gl~tl 256 (390)
T PRK08133 250 LKGLETL 256 (390)
T ss_pred HcccchH
Confidence 7765544
|
|
| >KOG1359|consensus | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.6e-12 Score=121.23 Aligned_cols=87 Identities=20% Similarity=0.230 Sum_probs=71.9
Q ss_pred CcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCcccccc---
Q psy2206 64 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASM--- 140 (430)
Q Consensus 64 rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~~--- 140 (430)
|.|.|.+|++|.+.++ .+++||||.||||||+ +||++++|+.+++++||.|-.|+|+++|+.
T Consensus 50 rVi~s~q~p~i~v~G~--------------~k~ilnFcaNnYLGLs-shPeii~a~~~aleeyGaGlssvrfIcGtq~iH 114 (417)
T KOG1359|consen 50 RVITSRQGPTIQVKGS--------------DKKILNFCANNYLGLS-SHPEIINAGQKALEEYGAGLSSVRFICGTQDIH 114 (417)
T ss_pred eEEeecccceEEEecc--------------ccceeeeccccccccc-CChHHHHHHHHHHHHhCCCccceeEEecchHHH
Confidence 7899999999998654 5799999999999999 899999999999999999999999999997
Q ss_pred ----------cccccceeeEEeccccccccccccc
Q psy2206 141 ----------LSKGASKSNILFQAHTNGFANGISK 165 (430)
Q Consensus 141 ----------l~~~~~~l~~~~~gh~~~~~~~~~~ 165 (430)
-++++++++..-+.-..+.+--+..
T Consensus 115 k~LE~kiAqfh~rED~ilypscfdANag~feail~ 149 (417)
T KOG1359|consen 115 KLLESKIAQFHGREDTILYPSCFDANAGAFEAILT 149 (417)
T ss_pred HHHHHHHHHHhCCCceEEeccccccchHHHHHhcC
Confidence 3777788776554443343433333
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.9e-11 Score=122.23 Aligned_cols=136 Identities=17% Similarity=0.188 Sum_probs=98.4
Q ss_pred HHHHHHHHHhCCCCCCC--CCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEE
Q psy2206 254 ERSKESVKQSGCALCSP--SAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYV 331 (430)
Q Consensus 254 ~a~~~ai~~yG~g~~~s--r~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~Liv 331 (430)
....+.+.++|....-. ..+++|++++++ ++++|++|++.+++|.+.|+++|+++|+++|++||+
T Consensus 124 ~~~~~~~~~~G~~v~~vd~~d~~~l~~ai~~-------------~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~viv 190 (403)
T PRK07810 124 VVCNEILPRWGVETVFVDGEDLSQWEEALSV-------------PTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVL 190 (403)
T ss_pred HHHHHHHHHcCcEEEEECCCCHHHHHHhcCc-------------CceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEE
Confidence 33444555666532211 125667766643 366899999999999999999999999999999999
Q ss_pred eccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----ccceeecCHHHHH-HHHhcCCcccccCCCcHHHHHH
Q psy2206 332 DEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS----MGGYVAGSKSTID-YIRANSHVRSYATSMPPPVAMQ 406 (430)
Q Consensus 332 DEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~----~GG~v~gs~~li~-~l~~~~~~~~~s~s~~P~~~aa 406 (430)
||+|+.+++.. + +. ..+||++.|++|.++. .||+|+++++.+. .++...+ ..+..++|..++.
T Consensus 191 D~a~a~~~~~~---~------~~-~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~--~~g~~~s~~~a~l 258 (403)
T PRK07810 191 DNVFATPLLQR---G------LP-LGADVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMR--HTGPALSAFNAWV 258 (403)
T ss_pred ECCCCccccCC---h------hh-cCCcEEEccCCceecCCcCceeEEEEeChHHHHHHHHHHHH--HhCCCCCHHHHHH
Confidence 99998776431 1 11 2469999999999974 3699999887665 3432211 2355789999999
Q ss_pred HHHHHHHH
Q psy2206 407 ILTSMRII 414 (430)
Q Consensus 407 alaaL~~l 414 (430)
++++|+.+
T Consensus 259 ~l~~L~tl 266 (403)
T PRK07810 259 LLKGLETL 266 (403)
T ss_pred HHhccCcH
Confidence 98888776
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.5e-11 Score=120.56 Aligned_cols=92 Identities=16% Similarity=0.250 Sum_probs=72.4
Q ss_pred eEEEEEcCccCCCCcc---cCHHHHHHHHHhcCcEEEEeccccccccCCC-CCccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSI---VRLPEIVRLKNKYKAYLYVDEAHSIGALGPT-GRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i---~~L~~I~~La~~y~~~LivDEAh~~G~lG~~-GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
+++|++.++.+++|.+ .++++|+++|++|++++|+||+|+..+++.. +..+....++ .+..|+++||||+||++
T Consensus 164 ~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~--~~~~i~~~S~SK~~~~~ 241 (386)
T PRK09082 164 TRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPEL--RERAFVVSSFGKTYHVT 241 (386)
T ss_pred ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCc--cCcEEEEeechhhccch
Confidence 4466777889999987 4589999999999999999999987766432 2233333232 24579999999999999
Q ss_pred c---ceeecCHHHHHHHHhcC
Q psy2206 373 G---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~ 390 (430)
| ||+++++++++.++...
T Consensus 242 G~RiG~iv~~~~l~~~~~~~~ 262 (386)
T PRK09082 242 GWKVGYCVAPAALSAEFRKVH 262 (386)
T ss_pred hhhhhhhhCCHHHHHHHHHHH
Confidence 9 99999999999888754
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-10 Score=118.17 Aligned_cols=111 Identities=19% Similarity=0.245 Sum_probs=79.2
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+.+ +++|+++|++|++++|+||+|+..++++....+....+. .+.+|+++||||+||++|
T Consensus 155 ~~~v~~~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~~~~G 232 (378)
T PRK07682 155 TKAILLCSPNNPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGM--RERTILISGFSKGFAMTG 232 (378)
T ss_pred cEEEEEECCCCCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccc--cCCEEEEecCcccccChh
Confidence 445666678999999876 899999999999999999999876665322222222222 245799999999999999
Q ss_pred ---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 ---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.+..... +. ..+.+++..+++.++|
T Consensus 233 lR~G~~~~~~~~i~~l~~~~~-~~-~~~~~~~~q~a~~~~l 271 (378)
T PRK07682 233 WRLGFIAAPVYFSEAMLKIHQ-YS-MMCAPTMAQFAALEAL 271 (378)
T ss_pred hhhhhhhcCHHHHHHHHHHHH-hh-ccCCCHHHHHHHHHHH
Confidence 999999999998876432 21 1223444444445555
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.4e-10 Score=118.70 Aligned_cols=92 Identities=14% Similarity=0.212 Sum_probs=71.5
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+.+ +++|+++|++|+++||+||+|....++.....+.+..+. .+.+|+++||||++|++|
T Consensus 180 ~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~--~~~~I~i~SfSK~~g~~G 257 (410)
T PRK06290 180 AKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGA--KEVGVEIHSLSKAYNMTG 257 (410)
T ss_pred ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCc--cccEEEEeechhhcCCch
Confidence 446666678999999998 788888899999999999999876554322222222111 245799999999999999
Q ss_pred ---ceeecCHHHHHHHHhcC
Q psy2206 374 ---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~ 390 (430)
||+++++++++.+....
T Consensus 258 lRiG~ii~~~~l~~~l~~~~ 277 (410)
T PRK06290 258 WRLAFVVGNELIVKAFATVK 277 (410)
T ss_pred hheEeEEeCHHHHHHHHHHH
Confidence 99999999999888654
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-10 Score=120.89 Aligned_cols=108 Identities=17% Similarity=0.241 Sum_probs=84.5
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|++|++.+++|.+.|+++|.++|+++|+++|+||+|+.+++.. . +. ..+||++.|++|.++.
T Consensus 150 ~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~---~------~~-~gaDivv~S~sK~l~g~g~~ 219 (398)
T PRK07504 150 NTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQK---P------LE-LGAHIVVYSATKHIDGQGRC 219 (398)
T ss_pred CceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccCC---c------hh-hCCCEEEeeccccccCCccc
Confidence 46799999999999999999999999999999999999998775421 1 11 2358999999999975
Q ss_pred ccceeecCHHHHHH-HHhcCCcccccCCCcHHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAGSKSTIDY-IRANSHVRSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 372 ~GG~v~gs~~li~~-l~~~~~~~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
.||+++++++.++. ++...+ ..+..++|..++.++.+|+.+.
T Consensus 220 ~GG~vv~~~~~i~~~~~~~~~--~~g~~~s~~~A~~~l~~L~tl~ 262 (398)
T PRK07504 220 LGGVVLSDKAWIEEHLQDYFR--HTGPSLSPFNAWTLLKGLETLP 262 (398)
T ss_pred eEEEEEeCcHHHHHHHHHHHH--HhCCCCCHHHHHHHHhccchHH
Confidence 46889888887753 332111 2356789999999999888773
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-10 Score=117.83 Aligned_cols=108 Identities=19% Similarity=0.248 Sum_probs=77.5
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+.+ +++|+++|++||++||+||+|+.-.++. . ....... .+..|+++||||+||++|
T Consensus 154 ~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~--~-~~s~~~~--~~~~I~~~s~SK~~~~~G 228 (373)
T PRK07324 154 TKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDG--S-TPSIADL--YEKGISTNSMSKTYSLPG 228 (373)
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCC--C-CCChhhc--cCCEEEEecchhhcCCcc
Confidence 457888899999999998 9999999999999999999997544432 1 1111112 133689999999999999
Q ss_pred ---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 ---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.++..... . +.+.+++...++..+|
T Consensus 229 ~RiG~i~~~~~li~~~~~~~~~-~-~~~~~~~~q~~a~~~l 267 (373)
T PRK07324 229 IRVGWIAANEEVIDILRKYRDY-T-MICAGVFDDMLASLAL 267 (373)
T ss_pred ceeEEEecCHHHHHHHHHHhCc-E-EecCChHHHHHHHHHH
Confidence 9999999999998875432 2 1223334444444444
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.9e-10 Score=114.09 Aligned_cols=120 Identities=18% Similarity=0.239 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccce
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE 349 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e 349 (430)
++++++++++ ++++|++..+.+++|.+.+ +++|+++|++||+++|+||+|+...++........
T Consensus 126 ~~~l~~~~~~-------------~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~ 192 (350)
T TIGR03537 126 LEKVEKSILE-------------ETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALE 192 (350)
T ss_pred HHHHHHhhhh-------------ccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhh
Confidence 5667776654 2345566678999999998 89999999999999999999986555432211111
Q ss_pred ecCCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 350 YFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 350 ~~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
.. .+..|+++||||++|++| ||+++++++++.++..... ++.+.++...+++.+++
T Consensus 193 ---~~-~~~~i~~~s~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l 251 (350)
T TIGR03537 193 ---VG-IENVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRAN--FGVASPDFVQAAAKAAW 251 (350)
T ss_pred ---cC-cCCEEEEeecccccCCccccceeeecCHHHHHHHHHHHHh--hccCCCHHHHHHHHHHh
Confidence 12 234799999999999998 9999999999988874433 23334444334344443
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.12 E-value=6e-10 Score=111.99 Aligned_cols=108 Identities=18% Similarity=0.256 Sum_probs=76.5
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhc--CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKY--KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y--~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
++++|++..+.+++|.+.|++++.++++.+ ++++|+||+|+. +...+.. ....... ..+|+++||||.+|++|
T Consensus 142 ~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~--~~~~~~~-~~~~~~~--~~~i~~~S~sK~~g~~G 216 (346)
T TIGR01141 142 KPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGE--FSGEPST-LPLLAEY--PNLIVLRTLSKAFGLAG 216 (346)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhh--hcCCccH-HHHHhhC--CCEEEEehhhHhhhchh
Confidence 456777789999999999999999999887 999999999973 2221111 1111111 23688999999999888
Q ss_pred ---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 374 ---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
||+++++++++.++..... + ..+++...++.++++
T Consensus 217 ~r~G~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~l~ 254 (346)
T TIGR01141 217 LRIGYAIANAEIIDALNKVRAP--F--NLSRLAQAAAIAALR 254 (346)
T ss_pred hhceeeecCHHHHHHHHhccCC--C--CCCHHHHHHHHHHhC
Confidence 9999999999998874432 2 234444444455443
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.11 E-value=3e-10 Score=116.50 Aligned_cols=94 Identities=19% Similarity=0.197 Sum_probs=69.3
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCC-CccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTG-RGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~G-rG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
.++|++..+.+++|.+.+ +++|+++|++|+++||+||+|+.-.+.... ..+....+. .+..|+++||||+||++
T Consensus 168 ~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~--~~~~i~~~S~SK~~g~~ 245 (389)
T PRK08068 168 AKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGA--KDVGIELYTLSKTFNMA 245 (389)
T ss_pred ceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCc--cCCEEEEecchhccCCc
Confidence 345666677999999998 578888999999999999999753332111 111222221 23568999999999999
Q ss_pred c---ceeecCHHHHHHHHhcCCc
Q psy2206 373 G---GYVAGSKSTIDYIRANSHV 392 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~~~ 392 (430)
| ||+++++++++.+......
T Consensus 246 GlRiG~~~~~~~l~~~l~~~~~~ 268 (389)
T PRK08068 246 GWRVAFAVGNESVIEAINLLQDH 268 (389)
T ss_pred cceeEeEecCHHHHHHHHHHHhh
Confidence 9 9999999999998875533
|
|
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.3e-10 Score=115.31 Aligned_cols=113 Identities=13% Similarity=0.229 Sum_probs=78.4
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCC-CCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGID-PREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~-~~~~dIv~~TlSKa~G~~ 372 (430)
+++|++..+.+++|.+.+ +++|+++|++||++||+||+|+..++++.+. ......+. +.+.+|+++||||.||++
T Consensus 159 ~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~-~~~~~~~~~~~~~~i~~~S~SK~~g~~ 237 (382)
T PRK06108 159 TRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGR-APSFLDIAEPDDRIIFVNSFSKNWAMT 237 (382)
T ss_pred ceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCC-CCCHhhcCCCcCCEEEEeechhhccCc
Confidence 456667788999998775 7889999999999999999998776652111 11111121 124579999999999988
Q ss_pred c---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 373 G---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
| ||+++++++++.+.... .+. +...+++...++.++|+
T Consensus 238 G~RiG~~~~~~~~~~~~~~~~-~~~-~~~~~~~~q~a~~~~l~ 278 (382)
T PRK06108 238 GWRLGWLVAPPALGQVLEKLI-EYN-TSCVAQFVQRAAVAALD 278 (382)
T ss_pred ccceeeeeCCHHHHHHHHHHH-Hhc-ccCCChHHHHHHHHHHh
Confidence 8 99999999999887643 221 22344555445555553
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.2e-10 Score=110.98 Aligned_cols=131 Identities=18% Similarity=0.258 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+++. + +.++|+.-.+.+++|.+.|+++|.++|++|++++++|++|++|... +.
T Consensus 113 ~~~l~~~l~~~-----~------~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~~~---------~~ 172 (355)
T TIGR03301 113 LNRIEEALAAD-----P------DITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGAIP---------ID 172 (355)
T ss_pred HHHHHHHHHhC-----C------CceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCCcc---------cc
Confidence 67888887652 1 2345555667788999999999999999999999999999865321 11
Q ss_pred CCCCCccEEEeCccchh-cccc-ceeecCHHHHHHHHhcCCccc---------------ccCCCcHHHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSF-GSMG-GYVAGSKSTIDYIRANSHVRS---------------YATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~-G~~G-G~v~gs~~li~~l~~~~~~~~---------------~s~s~~P~~~aaalaaL~~l~ 415 (430)
+...++|++++|++|++ |++| |++.+++++++.+.....++. +....++..+.++.++++.+.
T Consensus 173 ~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~ 252 (355)
T TIGR03301 173 IEELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWAYMEKTGKWRFTPPTHTVYAFAQALEELE 252 (355)
T ss_pred hhhcCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHHHHHHhhhcCCCCCCCcHHHHHHHHHHHHHHH
Confidence 22225689999999987 5667 999999999988763222211 111345566666778888876
Q ss_pred ccCCchHH
Q psy2206 416 GLENGDEG 423 (430)
Q Consensus 416 ~~~~~~~~ 423 (430)
++.+.++.
T Consensus 253 ~~g~~~~~ 260 (355)
T TIGR03301 253 AEGGVPAR 260 (355)
T ss_pred HcccHHHH
Confidence 65433433
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.1e-10 Score=116.24 Aligned_cols=92 Identities=15% Similarity=0.240 Sum_probs=70.9
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC-CCccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT-GRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~-GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
+++|++..+.+++|.+.+ +++|+++|++|++++|+||+|+..+++.. ...+....+. .+.+|+++||||+||++
T Consensus 160 ~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~g~~ 237 (387)
T PRK08912 160 TKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGM--RERTVKIGSAGKIFSLT 237 (387)
T ss_pred ceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCc--cCceEEEeechhhccCc
Confidence 345556688999999887 77799999999999999999986666431 1222222222 24579999999999999
Q ss_pred c---ceeecCHHHHHHHHhcC
Q psy2206 373 G---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~ 390 (430)
| ||+++++++++.+....
T Consensus 238 GlRiG~~~~~~~~~~~l~~~~ 258 (387)
T PRK08912 238 GWKVGFVCAAPPLLRVLAKAH 258 (387)
T ss_pred CceeEEEecCHHHHHHHHHHH
Confidence 9 99999999999887654
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.8e-10 Score=115.41 Aligned_cols=92 Identities=20% Similarity=0.318 Sum_probs=70.0
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCC-CCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDP-REVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~-~~~dIv~~TlSKa~G~~ 372 (430)
+++|++.++.+++|.+.+ +++|+++|++|+++||+||+|....++ +........+.. .+.+|+++||||+||++
T Consensus 167 ~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~ 244 (385)
T PRK09276 167 AKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYD--GYKPPSFLEVPGAKDVGIEFHSLSKTYNMT 244 (385)
T ss_pred ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecC--CCCCCChhccCCCcCCEEEEecchhhcCCc
Confidence 446666688999999998 688899999999999999999865553 211111111211 24578999999999999
Q ss_pred c---ceeecCHHHHHHHHhcC
Q psy2206 373 G---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~ 390 (430)
| ||+++++++++.+....
T Consensus 245 GlRiG~~i~~~~l~~~~~~~~ 265 (385)
T PRK09276 245 GWRIGFAVGNADLIAGLGKVK 265 (385)
T ss_pred chhheeeeCCHHHHHHHHHHH
Confidence 9 99999999999888743
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.3e-10 Score=115.82 Aligned_cols=92 Identities=17% Similarity=0.293 Sum_probs=69.6
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCC-CCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDP-REVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~-~~~dIv~~TlSKa~G~~ 372 (430)
+++|++..+.+++|.+.+ +++|+++|++||++||+||+|+...+.. ........+.. .+.+|+++||||+||++
T Consensus 165 ~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~--~~~~~~~~~~~~~~~~i~~~SfSK~~g~~ 242 (383)
T TIGR03540 165 AKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDG--YKAPSFLEVDGAKDVGIEFHSLSKTYNMT 242 (383)
T ss_pred ceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCC--CCCcCcccCCCcccCEEEEEecccccCCc
Confidence 346666678999999998 7899999999999999999998655532 11111111111 23568899999999999
Q ss_pred c---ceeecCHHHHHHHHhcC
Q psy2206 373 G---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~ 390 (430)
| ||+++++++++.+....
T Consensus 243 GlRiG~~i~~~~l~~~~~~~~ 263 (383)
T TIGR03540 243 GWRIGMAVGNADLIAGLGKVK 263 (383)
T ss_pred cceeeEEeCCHHHHHHHHHHH
Confidence 9 99999999998887643
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.7e-10 Score=116.47 Aligned_cols=122 Identities=17% Similarity=0.251 Sum_probs=84.7
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-c
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-G 374 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G 374 (430)
++++|+++.+.+++|.+.|+++|.++|++||+++++|++|+.|... .++....+|+++.|.+|.+|.+| |
T Consensus 138 ~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~---------~~~~~~~~D~~~~s~~K~~gp~g~g 208 (353)
T TIGR03235 138 DTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKIT---------VDLSADRIDLISCSGHKIYGPKGIG 208 (353)
T ss_pred CCEEEEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCcc---------ccccccCCCEEEeehhhcCCCCceE
Confidence 3568889999999999999999999999999999999999877541 22222357999999999988776 8
Q ss_pred eeecCHHHHHHHHhcC-------CcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 375 YVAGSKSTIDYIRANS-------HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 375 ~v~gs~~li~~l~~~~-------~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
++..+++..+..+... .......++++...++..++++++.. +.+...++++
T Consensus 209 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~--~~~~~~~~~~ 267 (353)
T TIGR03235 209 ALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAAEIARR--NAQAWEVKLR 267 (353)
T ss_pred EEEEccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHHHHHHh--hHHHHHHHHH
Confidence 8877776543211100 00012344566667778888888753 3334444443
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.10 E-value=4e-10 Score=115.72 Aligned_cols=123 Identities=15% Similarity=0.260 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+.+ ++++|++..+.+++|.+.|+++|.++|++||+++++|++|+.|... ..
T Consensus 149 ~~~l~~~i~~-------------~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~---------~~ 206 (403)
T TIGR01979 149 LDDLEKLLTE-------------KTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMP---------VD 206 (403)
T ss_pred HHHHHHHhcc-------------CCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccc---------cC
Confidence 5666666543 3568889999999999999999999999999999999999866421 11
Q ss_pred CCCCCccEEEeCccchhcccc-ceeecCHHHHHHHHhcCC------------------cccc-cCCCcHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIRANSH------------------VRSY-ATSMPPPVAMQILTSMR 412 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~~~~~------------------~~~~-s~s~~P~~~aaalaaL~ 412 (430)
+...++|+++.|++|.+|..| |++..++++++.+..... ...| ..+++...++++.++++
T Consensus 207 ~~~~~~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al~ 286 (403)
T TIGR01979 207 VQALDCDFYVFSGHKMYGPTGIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAID 286 (403)
T ss_pred ccccCCCEEEEecccccCCCCceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCccHHHHHHHHHHHH
Confidence 222246899999999999777 899899888776542110 0011 22345555666777888
Q ss_pred HHHcc
Q psy2206 413 IIMGL 417 (430)
Q Consensus 413 ~l~~~ 417 (430)
.+.+.
T Consensus 287 ~~~~~ 291 (403)
T TIGR01979 287 YLEAI 291 (403)
T ss_pred HHHHh
Confidence 77543
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.10 E-value=4e-10 Score=111.61 Aligned_cols=115 Identities=15% Similarity=0.179 Sum_probs=81.3
Q ss_pred ceEEEEEcCccCCCCcccCHHH---HHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPE---IVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~---I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
++.+|+++++.+++|.+.|+++ |+++|++||+++|+||+|+.+.++..+.+... .......|++++|++|.++..
T Consensus 132 ~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~K~~~~~ 209 (350)
T cd00609 132 KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALA--LLDAYERVIVLRSFSKTFGLP 209 (350)
T ss_pred cceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCccccccc--CcCccCcEEEEeecccccCCc
Confidence 3557777779999999998554 45899999999999999987766543332111 122235689999999999755
Q ss_pred c---ceeecCH-HHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 373 G---GYVAGSK-STIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 373 G---G~v~gs~-~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
| |++++++ ++++.++...... +...++..+.++..+++..
T Consensus 210 g~~~G~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~ 253 (350)
T cd00609 210 GLRIGYLIAPPEELLERLKKLLPYT--TSGPSTLSQAAAAAALDDG 253 (350)
T ss_pred ccceEEEecCHHHHHHHHHHHHHhc--ccCCChHHHHHHHHHHhCc
Confidence 5 8999998 8999888755332 2334555555566666654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.2e-10 Score=115.37 Aligned_cols=110 Identities=18% Similarity=0.292 Sum_probs=77.0
Q ss_pred EEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-
Q psy2206 298 ILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG- 373 (430)
Q Consensus 298 ~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G- 373 (430)
++|++.++.+++|.+.+ +++|+++|++|+++||+||+|+..+++.....+....+. .+..|+++||||++|++|
T Consensus 164 ~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~~vi~~~SfSK~~~l~Gl 241 (384)
T PRK06348 164 KAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGM--PERTITFGSFSKDFAMTGW 241 (384)
T ss_pred cEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCC--cCcEEEEecchhccCCccc
Confidence 35555688999999887 788888999999999999999866554321121222121 245799999999999998
Q ss_pred --ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 --GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 --G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.+........++ .+++...++..++
T Consensus 242 RiG~~v~~~~~~~~~~~~~~~~~~~--~~~~~q~~~~~~l 279 (384)
T PRK06348 242 RIGYVIAPDYIIETAKIINEGICFS--APTISQRAAIYAL 279 (384)
T ss_pred cceeeecCHHHHHHHHHHHHhccCC--CCHHHHHHHHHHH
Confidence 99999999999887654322232 3444444444444
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.5e-10 Score=117.44 Aligned_cols=125 Identities=16% Similarity=0.121 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|+++|++. + .+.++++++. .|.+.|+++|.++|+++|++++||++|++|.++..+.. .+
T Consensus 171 ~~~L~~~l~~~---------~--~~lvi~~~s~---~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~----~~ 232 (452)
T PTZ00094 171 YDKLEELAKAF---------R--PKLIIAGASA---YPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLP----SP 232 (452)
T ss_pred HHHHHHHHHHh---------C--CCEEEEeCCC---CCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCC----CC
Confidence 78899888652 1 1223343554 56778899999999999999999999999987643221 11
Q ss_pred CCCCCccEEEeCccchh-ccccceeecCHHHHHHHHhcCCcccc---cCCCcHHHHHHHHHHHHHHHcc
Q psy2206 353 IDPREVDILMGTYTKSF-GSMGGYVAGSKSTIDYIRANSHVRSY---ATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~-G~~GG~v~gs~~li~~l~~~~~~~~~---s~s~~P~~~aaalaaL~~l~~~ 417 (430)
+ ..+|++++|++|++ |..||++..++++.+.+........+ ..++++..+++..++++.+...
T Consensus 233 ~--~~~D~l~~S~hK~l~GP~Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~ 299 (452)
T PTZ00094 233 F--PYADVVTTTTHKSLRGPRSGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSP 299 (452)
T ss_pred C--CCCcEEEcCCccCCCCCCceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhCh
Confidence 2 25799999999988 67889888877666554433222222 3367778888888899988654
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.5e-10 Score=114.94 Aligned_cols=113 Identities=13% Similarity=0.200 Sum_probs=79.5
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCC-CCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGP-TGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~-~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
.++|++..+.+++|.+.+ +++|+++|++||+++|+||+|+...++. ....+.+.. ....+.+|+++||||.+|.+
T Consensus 165 ~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~SK~~~~~ 243 (393)
T PRK05764 165 TKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLS-PELRDRTITVNGFSKAYAMT 243 (393)
T ss_pred ceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcC-CCCcCCEEEEecCcccccCc
Confidence 446667788899999875 8889999999999999999998665532 112222211 11124589999999999988
Q ss_pred c---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 373 G---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
| ||+++++++++.+...... ++...+++..+++.+.|+
T Consensus 244 G~RiG~i~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~ 284 (393)
T PRK05764 244 GWRLGYAAGPKELIKAMSKLQSH--STSNPTSIAQYAAVAALN 284 (393)
T ss_pred cceeEEEecCHHHHHHHHHHHhh--cccCCChHHHHHHHHHHc
Confidence 8 9999999999988764432 222345555555555553
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.2e-10 Score=111.96 Aligned_cols=134 Identities=17% Similarity=0.239 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|+++|++. + +..+|.+-.+.+++|.+.|+++|.++|++||+++++|++|++|... ..
T Consensus 117 ~~~l~~~l~~~-----~------~~~~v~~~~~~~~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~---------~~ 176 (363)
T TIGR02326 117 VVEVEAILAAD-----P------AITHIALVHCETTTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIP---------ID 176 (363)
T ss_pred HHHHHHHHhhC-----C------CccEEEEEeecCCccccCcHHHHHHHHHHcCCEEEEEccccccCcc---------cc
Confidence 68888888652 1 2335666666788999999999999999999999999999865321 12
Q ss_pred CCCCCccEEEeCccchh-cccc-ceeecCHHHHHHHHhcCCc------------------ccccCCCcHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSF-GSMG-GYVAGSKSTIDYIRANSHV------------------RSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~-G~~G-G~v~gs~~li~~l~~~~~~------------------~~~s~s~~P~~~aaalaaL~ 412 (430)
+...++|++++|++|++ |.+| |++..++++++.+.....+ ..|+ .+++...+..++++
T Consensus 177 ~~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft--~~~~~~~al~~al~ 254 (363)
T TIGR02326 177 IAELHIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFT--SPTHVVHAFAQALL 254 (363)
T ss_pred hhhcCccEEEecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCC--CcHHHHHHHHHHHH
Confidence 22234689999999988 5677 9999999888765432111 1233 35566666778888
Q ss_pred HHHccCCchHHHhhhh
Q psy2206 413 IIMGLENGDEGNVRHS 428 (430)
Q Consensus 413 ~l~~~~~~~~~~~r~~ 428 (430)
.+..+.+.++..++++
T Consensus 255 ~l~~~g~~~~~~~~~~ 270 (363)
T TIGR02326 255 ELEKEGGVAARHQRYQ 270 (363)
T ss_pred HHHHhhCHHHHHHHHH
Confidence 8766654554444443
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.5e-10 Score=119.40 Aligned_cols=107 Identities=18% Similarity=0.197 Sum_probs=82.0
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|++|++.||+|.+.|+++|+++|++||++||+||+|+.++++. . +. ..+||++.|++|.++.
T Consensus 217 ~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~---p------l~-~gaDivv~S~tK~l~G~gdv 286 (464)
T PLN02509 217 QTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSR---P------LE-LGADIVMHSATKFIAGHSDV 286 (464)
T ss_pred CCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccCC---h------hh-cCCcEEEecCcccccCCCcc
Confidence 46789999999999999999999999999999999999998876542 1 11 2458999999999975
Q ss_pred ccceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.||+++. ++.+.+.++.... ...+.++|..++.++..|+.+
T Consensus 287 ~gG~v~~~~~~l~~~~~~~~~--~~g~~l~p~~A~l~lr~L~tL 328 (464)
T PLN02509 287 MAGVLAVKGEKLAKEVYFLQN--SEGSGLAPFDCWLCLRGIKTM 328 (464)
T ss_pred ceeEEEeccHHHHHHHHHHHH--hcCCCcCHHHHHHHHhhhhhH
Confidence 3678775 4444444332111 124557999999999998887
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.08 E-value=1e-09 Score=113.49 Aligned_cols=121 Identities=17% Similarity=0.227 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEE-cCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVV-EGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~-E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
+++|++++++. ++++|++ .+. .|...|+++|.++|++||+++|+||||+.|.++. |.. ..
T Consensus 154 ~~~l~~~i~~~------------~~k~v~~~~~~---~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~---g~~-~~ 214 (416)
T PRK00011 154 YDEVEKLALEH------------KPKLIIAGASA---YSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAA---GVH-PS 214 (416)
T ss_pred HHHHHHHHHhc------------CCCEEEECCCc---CCCccCHHHHHHHHHHcCCEEEEECcchhccccc---Ccc-CC
Confidence 67888887641 1234444 444 4566799999999999999999999998776542 111 11
Q ss_pred CCCCCCccEEEeCccchh-ccccceeecC-HHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 352 GIDPREVDILMGTYTKSF-GSMGGYVAGS-KSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~-G~~GG~v~gs-~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.+. .+|++++|++|++ |..||+++++ +++++.++.....+.++++..+..++...+.++++
T Consensus 215 ~~~--~~di~~~S~~K~l~g~~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~ 277 (416)
T PRK00011 215 PVP--HADVVTTTTHKTLRGPRGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEAL 277 (416)
T ss_pred CCC--CCcEEEecCCcCCCCCCceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHH
Confidence 121 4689999999999 5678999985 78999888755554444444444444334444444
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.1e-10 Score=114.55 Aligned_cols=92 Identities=20% Similarity=0.271 Sum_probs=70.2
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC-CCccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT-GRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~-GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
+++|++.++.+++|.+.+ +++|+++|++|+++||+||+|+...+... ...+....+. .+..|+++||||+||++
T Consensus 171 ~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~--~~~~i~~~SfSK~~~~~ 248 (394)
T PRK05942 171 AKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGA--KDIGVEFHTLSKTYNMA 248 (394)
T ss_pred ceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCc--cccEEEEecchhccCCh
Confidence 456666688999999998 88999999999999999999986655321 1122111111 24568899999999999
Q ss_pred c---ceeecCHHHHHHHHhcC
Q psy2206 373 G---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~ 390 (430)
| ||+++++++++.++...
T Consensus 249 GlRiG~i~~~~~l~~~l~~~~ 269 (394)
T PRK05942 249 GWRVGFVVGNRHIIQGLRTLK 269 (394)
T ss_pred hhheeeeecCHHHHHHHHHHH
Confidence 9 99999999999988644
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.4e-10 Score=113.95 Aligned_cols=92 Identities=20% Similarity=0.307 Sum_probs=71.2
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCC-CCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGP-TGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~-~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
+.+|++.++.+++|.+.+ +++|+++|++|++++|+||+|+...+.. ....+.+..+. .+.+|+++||||+||++
T Consensus 160 ~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~g~~ 237 (387)
T PRK07777 160 TRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGM--RERTVTISSAAKTFNVT 237 (387)
T ss_pred cEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCC--cCcEEEEeechhhccCc
Confidence 446677789999999875 8899999999999999999997655532 12233322222 24689999999999988
Q ss_pred c---ceeecCHHHHHHHHhcC
Q psy2206 373 G---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~ 390 (430)
| ||+++++++++.+....
T Consensus 238 GlRiG~~~~~~~l~~~~~~~~ 258 (387)
T PRK07777 238 GWKIGWACGPAPLIAAVRAAK 258 (387)
T ss_pred CceeEEEecCHHHHHHHHHHH
Confidence 9 99999999999887644
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.6e-10 Score=115.22 Aligned_cols=101 Identities=20% Similarity=0.296 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccce
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE 349 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e 349 (430)
+++|++.+++ ++++|++..+.+++|.+.| +++|+++|++|++++|+||+|+..++... .. ..
T Consensus 156 ~~~l~~~i~~-------------~~~~v~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~-~~-~~ 220 (391)
T PRK08361 156 PDELLELITK-------------RTRMIVINYPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGA-KH-YP 220 (391)
T ss_pred HHHHHHhccc-------------ccEEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCC-CC-CC
Confidence 5667666543 2446667788999999999 89999999999999999999986655321 11 11
Q ss_pred ecCCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhc
Q psy2206 350 YFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRAN 389 (430)
Q Consensus 350 ~~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~ 389 (430)
..... .+.+|+++||||+||++| ||+++++++++.+...
T Consensus 221 ~~~~~-~~~~i~~~s~SK~~~~~GlRiG~~~~~~~~~~~~~~~ 262 (391)
T PRK08361 221 MIKYA-PDNTILANSFSKTFAMTGWRLGFVIAPEQVIKDMIKL 262 (391)
T ss_pred HhhcC-CCCEEEEecCchhcCCcHhhhhhhccCHHHHHHHHHH
Confidence 11122 245899999999999998 9999999999887654
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-09 Score=113.21 Aligned_cols=103 Identities=21% Similarity=0.200 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCC-Cccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTG-RGVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~G-rG~~ 348 (430)
+++|++++++ ++++|++..+.+++|.+.+ +++|+++|++||++||+||+|+..++.... ..+.
T Consensus 168 ~~~l~~~~~~-------------~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~ 234 (405)
T PRK06207 168 LDQLEEAFKA-------------GVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLR 234 (405)
T ss_pred HHHHHHhhhh-------------cCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchh
Confidence 5667776654 2446777888999999998 888899999999999999999865553211 1111
Q ss_pred eecCCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcC
Q psy2206 349 EYFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 349 e~~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~ 390 (430)
.+... .+..|+++||||+|+++| ||+++++++++.+....
T Consensus 235 -~~~~~-~~~vi~i~SfSK~~~lpGlRiG~ii~~~~l~~~~~~~~ 277 (405)
T PRK06207 235 -ALPID-PENVITIMGPSKTESLSGYRLGVAFGSPAIIDRMEKLQ 277 (405)
T ss_pred -cCCCC-cCcEEEEecchhhccCcccceEEEEcCHHHHHHHHHHH
Confidence 11222 235699999999999888 99999999999887644
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.2e-10 Score=114.00 Aligned_cols=123 Identities=12% Similarity=0.190 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+.+ ++++|++..+.+++|.+.|+++|+++|++||+++++|++|+.|.+. ..
T Consensus 150 ~~~l~~~i~~-------------~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~---------~~ 207 (401)
T PRK10874 150 VDLLPELITP-------------RTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFP---------AD 207 (401)
T ss_pred HHHHHHhcCc-------------CcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCccccccc---------CC
Confidence 5667666532 4568889999999999999999999999999999999999866432 11
Q ss_pred CCCCCccEEEeCccchhcccc-ceeecCHHHHHHHHhcC------------------Ccccc-cCCCcHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIRANS------------------HVRSY-ATSMPPPVAMQILTSMR 412 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~~~~------------------~~~~~-s~s~~P~~~aaalaaL~ 412 (430)
+...++|+++.|++|.+|..| |++..++++++.+.... .+..| ..+++.+..++..++++
T Consensus 208 ~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~ 287 (401)
T PRK10874 208 VQALDIDFYAFSGHKLYGPTGIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAGVIGLSAALE 287 (401)
T ss_pred chhcCCCEEEEecccccCCCccEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHHHHHHHHHHH
Confidence 211246899999999998777 89999999887654211 00111 12345456666777888
Q ss_pred HHHcc
Q psy2206 413 IIMGL 417 (430)
Q Consensus 413 ~l~~~ 417 (430)
.+.+.
T Consensus 288 ~l~~~ 292 (401)
T PRK10874 288 WLADI 292 (401)
T ss_pred HHHHh
Confidence 77544
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=9.9e-10 Score=113.04 Aligned_cols=106 Identities=16% Similarity=0.247 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCH---HHHHHHHHhcCcEEEEeccccccccCCCCCccce
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRL---PEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE 349 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L---~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e 349 (430)
+++|++++++.. .++++|++..+.+++|.+.+. ++|+++|++||++||+||+|+...++ +.....
T Consensus 151 ~~~l~~~l~~~~----------~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~--~~~~~~ 218 (395)
T PRK08175 151 FNELERAIRESY----------PKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYD--GWKAPS 218 (395)
T ss_pred HHHHHHHHhhcc----------CCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccC--CCCCcc
Confidence 577777776421 134566777889999999885 89999999999999999999865553 211111
Q ss_pred ecCCC-CCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcC
Q psy2206 350 YFGID-PREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 350 ~~g~~-~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~ 390 (430)
...+. ..+..|+++||||+||++| ||+++++++++.+....
T Consensus 219 ~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~~~l~~~~~~~~ 263 (395)
T PRK08175 219 IMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNPELVSALARIK 263 (395)
T ss_pred hhcCCCcccCEEEEeeccccccCcchhheeeeCCHHHHHHHHHHH
Confidence 11111 1234688999999999988 99999999999887643
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.5e-09 Score=111.57 Aligned_cols=113 Identities=19% Similarity=0.236 Sum_probs=76.8
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCc--cce---ecCCCCCCccEEEeCccch
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRG--VTE---YFGIDPREVDILMGTYTKS 368 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG--~~e---~~g~~~~~~dIv~~TlSKa 368 (430)
+++|++.++.+++|.+.+ +.+|+++|++|+++||+||+|+...+...... ... ..+....+..|+++||||+
T Consensus 167 ~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~ 246 (396)
T PRK09147 167 TQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKR 246 (396)
T ss_pred cEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccc
Confidence 345666789999999986 88888889999999999999987655431011 111 1111111356999999999
Q ss_pred hcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 369 FGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 369 ~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
|+++| ||+++++++++.+..... + .+.+.+++..+++.+++
T Consensus 247 ~~~~GlRiG~~~~~~~l~~~~~~~~~-~-~~~~~~~~~q~a~~~~~ 290 (396)
T PRK09147 247 SNVPGLRSGFVAGDAALLKKFLLYRT-Y-HGCAMPPAVQAASIAAW 290 (396)
T ss_pred cCCccceeeeecCCHHHHHHHHHHhh-h-cccCCCHHHHHHHHHHh
Confidence 99999 999999999988875432 1 12334444444444444
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.4e-10 Score=115.34 Aligned_cols=107 Identities=20% Similarity=0.167 Sum_probs=80.4
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc---
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM--- 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~--- 372 (430)
++++|++|.+.+++|.+.++++|+++|++||++||+||+|+.+..+. . +. ..+||++.|++|.++..
T Consensus 146 ~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~---p------~~-~gaDivv~S~sK~l~g~~~~ 215 (388)
T PRK07811 146 RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQ---P------LA-LGADVVVHSTTKYIGGHSDV 215 (388)
T ss_pred CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccCC---c------hh-hCCcEEEecCceeecCCCCc
Confidence 46789999999999999999999999999999999999998765421 1 11 24589999999999864
Q ss_pred -cceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 373 -GGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 373 -GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
||++++ ++++++.++.... ..+..++|..++.++..|+.+
T Consensus 216 ~gG~vv~~~~~l~~~~~~~~~--~~g~~~s~~~a~l~~~~L~tl 257 (388)
T PRK07811 216 VGGALVTNDEELDEAFAFLQN--GAGAVPGPFDAYLTLRGLKTL 257 (388)
T ss_pred EEEEEEECCHHHHHHHHHHHH--hcCCCCCHHHHHHHHhccCcH
Confidence 687765 5777776654221 224556787777666666554
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.9e-10 Score=114.66 Aligned_cols=130 Identities=19% Similarity=0.134 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCC--cccCHHHHHHHHHhcCcEEEEeccccccccCCCCCcccee
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDG--SIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEY 350 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G--~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~ 350 (430)
+++|++++++.. ..+. .++++|+++++.++.| ...++++|+++|++||++|++||||..+..+..|..+. .
T Consensus 110 ~~~l~~~i~~~~-----~~~~-~~~~~v~l~~p~n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~-~ 182 (338)
T cd06502 110 PEDLEAAIRPRD-----DIHF-PPPSLVSLENTTEGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALK-T 182 (338)
T ss_pred HHHHHHHhhccC-----CCcC-CcceEEEEEeecCCccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHH-H
Confidence 567777775420 0011 1356788888877633 34568889999999999999999997554332232211 1
Q ss_pred cCCCCCCccEEEeCccchhccccce-eecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 351 FGIDPREVDILMGTYTKSFGSMGGY-VAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 351 ~g~~~~~~dIv~~TlSKa~G~~GG~-v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
.. ...|+++.|+||++|++||+ +++++++++.++.....+..+...+++.+++++++|+
T Consensus 183 ~~---~~~d~~~~s~sK~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~ 242 (338)
T cd06502 183 YK---SGVDSVSFCLSKGGGAPVGAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALE 242 (338)
T ss_pred HH---hcCCEEEEeccccCCCccceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhc
Confidence 11 24578899999999988775 5689999988876443322233355566666666654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.9e-10 Score=116.78 Aligned_cols=107 Identities=15% Similarity=0.177 Sum_probs=85.5
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc---
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM--- 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~--- 372 (430)
++++|++|++.|++|.+.|+++|+++|++||+++++||+|+.++.- ..+. ..+||++.|++|.++..
T Consensus 146 ~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~---------~Pl~-~GaDivv~S~tK~l~Gh~d~ 215 (394)
T PRK09028 146 NTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINS---------RPFE-MGVDISIQAATKYIVGHSDV 215 (394)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccccccC---------Cccc-cCceEEEEeCCeEecCCCCE
Confidence 4679999999999999999999999999999999999999876421 1122 35699999999999644
Q ss_pred -cceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 373 -GGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 373 -GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
||++++++++.+.++.... ..+..++|..++.++..|+.+
T Consensus 216 ~~G~~~~~~~~~~~l~~~~~--~~G~~~~p~~a~l~~rgl~TL 256 (394)
T PRK09028 216 MLGTATANEKHWDQLREHSY--LMGQCTSPDDVYLAMRGLRTL 256 (394)
T ss_pred EEEEEECCHHHHHHHHHHHH--hcCCCCCHHHHHHHHcccCcH
Confidence 6888888887776664322 246678999999988877665
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-09 Score=112.83 Aligned_cols=104 Identities=15% Similarity=0.161 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccce
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE 349 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e 349 (430)
+++|++.+++ ++++|++..+.+++|.+.+ +++|+++|++||++||+||+|+...++....-...
T Consensus 150 ~~~l~~~i~~-------------~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~ 216 (389)
T PRK05957 150 PEAIEQAITP-------------KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPG 216 (389)
T ss_pred HHHHHHhcCc-------------CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChh
Confidence 5667766542 3456677789999999987 89999999999999999999986555431110111
Q ss_pred ecCCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcC
Q psy2206 350 YFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 350 ~~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~ 390 (430)
.. ....+..|+++||||.+|++| ||+++++++++.+....
T Consensus 217 ~~-~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~ 259 (389)
T PRK05957 217 SI-PGSGNHTISLYSLSKAYGFASWRIGYMVIPIHLLEAIKKIQ 259 (389)
T ss_pred hC-CCccCcEEEEecchhhccCccceeEEEecCHHHHHHHHHHH
Confidence 11 111234689999999999999 99999999999988754
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-09 Score=108.99 Aligned_cols=124 Identities=23% Similarity=0.312 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+++. ++.+|++..+.+++|.+.|+++|.++|++||+++++|++|++|... +.
T Consensus 113 ~~~l~~~i~~~------------~~~~v~i~~~~~~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~---------~~ 171 (356)
T cd06451 113 PEEIAEALEQH------------DIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEP---------FR 171 (356)
T ss_pred HHHHHHHHhcc------------CCCEEEEeccCCCcccccCHHHHHHHHHhcCCEEEEeeehhccCcc---------cc
Confidence 67777777531 2345666677889999999999999999999999999999865321 11
Q ss_pred CCCCCccEEEeCccchhccc-c-ceeecCHHHHHHHHh--cCCcc---------------cccCCCcHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGSM-G-GYVAGSKSTIDYIRA--NSHVR---------------SYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~-G-G~v~gs~~li~~l~~--~~~~~---------------~~s~s~~P~~~aaalaaL~~ 413 (430)
+...++|++++|++|.++.+ | |+++.++++++.+.. ....+ ..++++++...+++.++++.
T Consensus 172 ~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~aal~~ 251 (356)
T cd06451 172 MDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVNLLYALREALDL 251 (356)
T ss_pred ccccCccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHHHHHHHHHHHHH
Confidence 11124689999999999864 4 899999999888763 11111 23445566666777788887
Q ss_pred HHcc
Q psy2206 414 IMGL 417 (430)
Q Consensus 414 l~~~ 417 (430)
+...
T Consensus 252 l~~~ 255 (356)
T cd06451 252 ILEE 255 (356)
T ss_pred HHHh
Confidence 7653
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=112.45 Aligned_cols=92 Identities=13% Similarity=0.212 Sum_probs=70.2
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCC-CCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDP-REVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~-~~~dIv~~TlSKa~G~~ 372 (430)
+++|++..+.+++|.+.+ +.+|+++|++||++||+||+|+...+.. ........+.. .+.+|+++||||+||++
T Consensus 167 ~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~--~~~~~~~~~~~~~~~~i~~~S~SK~~~~~ 244 (399)
T PRK07681 167 AKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDG--NKPISFLSVPGAKEVGVEINSLSKSYSLA 244 (399)
T ss_pred ceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCC--CCCCChhhCCCCcccEEEEeecccccCCc
Confidence 446666678999999998 8888999999999999999998655542 11111111211 23579999999999999
Q ss_pred c---ceeecCHHHHHHHHhcC
Q psy2206 373 G---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~ 390 (430)
| ||+++++++++.+....
T Consensus 245 GlRiG~~i~~~~l~~~~~~~~ 265 (399)
T PRK07681 245 GSRIGYMIGNEEIVRALTQFK 265 (399)
T ss_pred cceeEEEecCHHHHHHHHHHH
Confidence 9 99999999999887644
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.2e-10 Score=115.15 Aligned_cols=122 Identities=20% Similarity=0.242 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHh------cCcEEEEeccccccccCCCCCc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNK------YKAYLYVDEAHSIGALGPTGRG 346 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~------y~~~LivDEAh~~G~lG~~GrG 346 (430)
+++|++.+++... ..++++|++|++.||+|.+.++++|.++++. +++++|+||++...++-
T Consensus 159 ~~~l~~~l~~~~~--------~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~----- 225 (427)
T PRK07049 159 EAAIGAAAEAAAA--------KGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQ----- 225 (427)
T ss_pred HHHHHHHHHhhcc--------CCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccC-----
Confidence 4667776654310 1146799999999999999999999999988 89999999997543211
Q ss_pred cceecCCCCCCccEEEeCccchhcc----ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 347 VTEYFGIDPREVDILMGTYTKSFGS----MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 347 ~~e~~g~~~~~~dIv~~TlSKa~G~----~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
..+. ...||++.||||++|. .+||+++++++++.++.... .++..++|..+++++..|+.+
T Consensus 226 ----~pl~-~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~--~~g~~ls~~~a~l~~r~L~tl 290 (427)
T PRK07049 226 ----KPLE-HGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRS--AIGTQLDPHSCWMLGRSLETL 290 (427)
T ss_pred ----Cccc-cCCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHH--hcCCCCCHHHHHHHHcCCChH
Confidence 1122 2458999999999983 35999999999998886432 346778999998888887655
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.2e-09 Score=108.88 Aligned_cols=134 Identities=22% Similarity=0.265 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+++. .+..+|++..+.+++|.+.|+++|.++|+++++++++|.+|++|.. . ..
T Consensus 119 ~~~l~~~l~~~-----------~~~~~v~~~~~~~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~---~------~~ 178 (368)
T PRK13479 119 AAEVEAALAAD-----------PRITHVALVHCETTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAI---P------ID 178 (368)
T ss_pred HHHHHHHHHhC-----------CCCcEEEEEcccCccccccCHHHHHHHHHHcCCEEEEEcccccCCc---c------cc
Confidence 67888877642 1234677778888999999999999999999999999999876531 1 12
Q ss_pred CCCCCccEEEeCccchh-cccc-ceeecCHHHHHHHHhcCCcccc---------------cCCCcHHHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSF-GSMG-GYVAGSKSTIDYIRANSHVRSY---------------ATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~-G~~G-G~v~gs~~li~~l~~~~~~~~~---------------s~s~~P~~~aaalaaL~~l~ 415 (430)
+...++|++++|++|.+ |.+| ||+.+++++++.+.....++.+ ..+++....++..++++.+.
T Consensus 179 ~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~ 258 (368)
T PRK13479 179 IAELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELE 258 (368)
T ss_pred ccccCceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHH
Confidence 22234689999999986 6778 9999999999887654322110 01345556666777888776
Q ss_pred ccCCchHHHhh
Q psy2206 416 GLENGDEGNVR 426 (430)
Q Consensus 416 ~~~~~~~~~~r 426 (430)
++.+.++..++
T Consensus 259 ~~~~~~~~~~~ 269 (368)
T PRK13479 259 EEGGVPARGAR 269 (368)
T ss_pred HhhCHHHHHHH
Confidence 65444444333
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.6e-10 Score=113.46 Aligned_cols=132 Identities=14% Similarity=0.132 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++.+ ++++|++..+.+++|.+.|+++|.++|++||+++++|++|+.|... ..
T Consensus 154 ~~~l~~~i~~-------------~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~---------~~ 211 (406)
T PRK09295 154 LETLPALFDE-------------RTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHP---------VD 211 (406)
T ss_pred HHHHHHhcCC-------------CcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccc---------cC
Confidence 5667666542 3568888899999999999999999999999999999999865321 12
Q ss_pred CCCCCccEEEeCccchhcccc-ceeecCHHHHHHHHhcCC------------c-------c-cccCCCcHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIRANSH------------V-------R-SYATSMPPPVAMQILTSM 411 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~~~~~------------~-------~-~~s~s~~P~~~aaalaaL 411 (430)
+...++|+++.|++|.+|..| |++..++++++.+..... . . ....+++...++++.+++
T Consensus 212 ~~~~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al 291 (406)
T PRK09295 212 VQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAAL 291 (406)
T ss_pred chhcCCCEEEeehhhccCCCCcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCCCccHHHHHHHHHHH
Confidence 222356999999999888777 899899988776532100 0 0 012345666777788899
Q ss_pred HHHHccCCchHHHhhh
Q psy2206 412 RIIMGLENGDEGNVRH 427 (430)
Q Consensus 412 ~~l~~~~~~~~~~~r~ 427 (430)
+.+.+. +.+..++++
T Consensus 292 ~~~~~~-g~~~i~~~~ 306 (406)
T PRK09295 292 DYVSAL-GLNNIAEYE 306 (406)
T ss_pred HHHHHh-CHHHHHHHH
Confidence 988654 333344443
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-09 Score=112.14 Aligned_cols=108 Identities=16% Similarity=0.252 Sum_probs=74.6
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+.+ +.+|+++|++||+++|+||+|..-.++.... ...... +..|+++||||+||++|
T Consensus 166 ~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~---~~~~~~--~~vi~~~S~SK~~g~~G 240 (387)
T PRK08960 166 TVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAA---SVLEVD--DDAFVLNSFSKYFGMTG 240 (387)
T ss_pred ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCC---Chhhcc--CCEEEEeecccccCCcc
Confidence 446666778999999988 5667777999999999999997544432211 122232 34689999999999988
Q ss_pred ---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 ---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.++.....+ +...+.+...++.+++
T Consensus 241 lRiG~~~~~~~~~~~~~~~~~~~--~~~~s~~~q~a~~~~l 279 (387)
T PRK08960 241 WRLGWLVAPPAAVPELEKLAQNL--YISASTPAQHAALACF 279 (387)
T ss_pred cEEEEEEcCHHHHHHHHHHHhhh--ccCCCHHHHHHHHHHh
Confidence 99999999999887644322 2223444444444444
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-09 Score=113.33 Aligned_cols=93 Identities=16% Similarity=0.212 Sum_probs=70.5
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCC-ccceecCCCCCCccEEEeCccchhcc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR-GVTEYFGIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr-G~~e~~g~~~~~~dIv~~TlSKa~G~ 371 (430)
++.+|++..+.+++|.+.+ +++|+++|++|+++||+||+|+...++.... .+.+ ..-. .+..|+++||||++|+
T Consensus 165 ~~~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~-~~~~-~~~~i~~~SfSK~~~~ 242 (405)
T PRK09148 165 KPIALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQ-VPGA-KDVTVEFTSMSKTFSM 242 (405)
T ss_pred cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhh-CCCc-cCcEEEEeccccccCC
Confidence 3567778888999999998 5788899999999999999998655542111 1111 1111 2346789999999999
Q ss_pred cc---ceeecCHHHHHHHHhcC
Q psy2206 372 MG---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 372 ~G---G~v~gs~~li~~l~~~~ 390 (430)
+| ||+++++++++.+....
T Consensus 243 pGlR~G~~v~~~~~i~~l~~~~ 264 (405)
T PRK09148 243 AGWRMGFAVGNERLIAALTRVK 264 (405)
T ss_pred cchheeeeeCCHHHHHHHHHHH
Confidence 99 99999999999887643
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.8e-10 Score=114.77 Aligned_cols=107 Identities=17% Similarity=0.202 Sum_probs=83.9
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|++|++.|++|.+.|+++|.++|+++|+++|+||+|..+++.. ++. ..+||++.|++|.++.
T Consensus 138 ~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~~---------pl~-~GaDivv~S~tK~l~G~~d~ 207 (388)
T PRK08861 138 KPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQK---------PLE-LGADFVIHSTTKYINGHSDV 207 (388)
T ss_pred CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccCC---------Ccc-cCCCEEEeecceeccCCCcc
Confidence 46789999999999999999999999999999999999998775421 122 2469999999999964
Q ss_pred ccceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.||++++ ++++.+.++.... ..+..++|..++.++..|+.+
T Consensus 208 ~gG~i~~~~~~~~~~~~~~~~--~~G~~~~p~~a~l~~rgl~Tl 249 (388)
T PRK08861 208 IGGVLITKTKEHAEELAWWGN--CIGATGTPFDSYMTLRGIRTL 249 (388)
T ss_pred eeEEEEecHHHHHHHHHHHHh--ccCCCCChHHHHHHHhcCCCH
Confidence 4688876 4667666654322 346778999999888877665
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=8e-10 Score=111.58 Aligned_cols=110 Identities=20% Similarity=0.234 Sum_probs=77.9
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHh--cCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNK--YKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~--y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G- 373 (430)
+++|++..+.+++|.+.|+++|.++++. +++++|+||+|....++........... ..+..|+++||||+||++|
T Consensus 146 ~~~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~--~~~~vi~~~S~SK~~g~~Gl 223 (352)
T PRK03321 146 TRLIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVR--DHPNVVVLRTFSKAYGLAGL 223 (352)
T ss_pred CCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHh--hCCCEEEEecchHHhhhHHH
Confidence 4466667899999999999999999987 5999999999975544321111111111 1234689999999999998
Q ss_pred --ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 374 --GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 374 --G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
||+++++++++.+...... ...+++...++.++|+
T Consensus 224 RiG~~v~~~~~~~~~~~~~~~----~~~s~~~q~~a~~~l~ 260 (352)
T PRK03321 224 RVGYAVGHPEVIAALRKVAVP----FSVNSLAQAAAIASLA 260 (352)
T ss_pred hhhhhcCCHHHHHHHHHhcCC----CCCCHHHHHHHHHHhc
Confidence 9999999999998875422 2234454444555553
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.02 E-value=1e-09 Score=113.90 Aligned_cols=131 Identities=17% Similarity=0.221 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+.+ ++++|++..+.+++|.+.|+++|.++|++||+++++|++|+.|... ..
T Consensus 163 ~~~l~~~i~~-------------~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~---------~~ 220 (424)
T PLN02855 163 VEQLKELLSE-------------KTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMP---------VD 220 (424)
T ss_pred HHHHHHHhcc-------------CceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcC---------CC
Confidence 5666666542 4568899999999999999999999999999999999999765321 12
Q ss_pred CCCCCccEEEeCccchhcccc-ceeecCHHHHHHHHhcC--------------------CcccccCCCcHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIRANS--------------------HVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~~~~--------------------~~~~~s~s~~P~~~aaalaaL 411 (430)
+....+|+++.|++|.+|..| |++..++++++.+.... ..+- ..+.+...++++.+++
T Consensus 221 ~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e-~GT~~~~~~~~l~~al 299 (424)
T PLN02855 221 VQTLGADFLVASSHKMCGPTGIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFE-AGTPAIGEAIGLGAAI 299 (424)
T ss_pred chhcCCCEEEeecccccCCCccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhcc-CCChHHHHHHHHHHHH
Confidence 222246899999999888777 89999998887654220 0011 2234555666667788
Q ss_pred HHHHccCCchHHHhhh
Q psy2206 412 RIIMGLENGDEGNVRH 427 (430)
Q Consensus 412 ~~l~~~~~~~~~~~r~ 427 (430)
+.+.+. +.+..++++
T Consensus 300 ~~~~~~-g~~~i~~~~ 314 (424)
T PLN02855 300 DYLSEI-GMDRIHEYE 314 (424)
T ss_pred HHHHHh-CHHHHHHHH
Confidence 877554 444444443
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-09 Score=111.41 Aligned_cols=93 Identities=20% Similarity=0.185 Sum_probs=68.6
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCC-CccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPR-EVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~-~~dIv~~TlSKa~G~~ 372 (430)
+++|++.++.+++|.+.+ +++|+++|++||++||+||+|..-.+... ..........+. ...|+++||||+||++
T Consensus 166 ~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~-~~~~~~~~~~~~~~~vi~~~SfSK~~g~~ 244 (388)
T PRK07366 166 ARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGE-VEPPSILQADPEKSVSIEFFTLSKSYNMG 244 (388)
T ss_pred ceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCC-CCCCChhhCCCCcccEEEEeecccccCCc
Confidence 345666679999999987 67778899999999999999986555321 101111112211 2458899999999999
Q ss_pred c---ceeecCHHHHHHHHhcC
Q psy2206 373 G---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~ 390 (430)
| ||+++++++++.+....
T Consensus 245 GlRiG~~v~~~~li~~l~~~~ 265 (388)
T PRK07366 245 GFRIGFAIGNAQLIQALRQVK 265 (388)
T ss_pred chhheehcCCHHHHHHHHHHH
Confidence 9 99999999999887644
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-09 Score=112.34 Aligned_cols=123 Identities=15% Similarity=0.214 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++.+ ++++|++..+.+++|.+.|+++|.++|++||+++++|++|+.|.+- ..
T Consensus 147 ~~~l~~~i~~-------------~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~---------~~ 204 (398)
T TIGR03392 147 IRQLPELLTP-------------RTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGP---------PD 204 (398)
T ss_pred HHHHHHHhcc-------------CceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCC---------CC
Confidence 5677766643 3568888999999999999999999999999999999999865421 11
Q ss_pred CCCCCccEEEeCccchhcccc-ceeecCHHHHHHHHhcCCc------------------ccc-cCCCcHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIRANSHV------------------RSY-ATSMPPPVAMQILTSMR 412 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~~~~~~------------------~~~-s~s~~P~~~aaalaaL~ 412 (430)
+...++|+++.|++|.+|..| |++..++++++.+...... .-| ..+++.+..+++.++++
T Consensus 205 ~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~ 284 (398)
T TIGR03392 205 VQALDIDFYAFSGHKLYGPTGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGVIGLSAALE 284 (398)
T ss_pred hhhcCCCEEEEecccccCCCceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHHHHHHHHHH
Confidence 111246899889999998777 8999999988766421100 011 22345556667778888
Q ss_pred HHHcc
Q psy2206 413 IIMGL 417 (430)
Q Consensus 413 ~l~~~ 417 (430)
.+.+.
T Consensus 285 ~l~~~ 289 (398)
T TIGR03392 285 WLTDI 289 (398)
T ss_pred HHHHh
Confidence 87543
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.5e-09 Score=110.59 Aligned_cols=135 Identities=14% Similarity=0.103 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
++++++.++.. ..++++|++..+.+++|.+.|+++|.++|++||++++||++|++|.+. ++
T Consensus 158 ~~~l~~~~~~~----------~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~---------id 218 (406)
T TIGR01814 158 LEDILDTIEKN----------GDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVP---------LD 218 (406)
T ss_pred HHHHHHHHHhc----------CCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcc---------cc
Confidence 57788877642 125789999999999999999999999999999999999999987541 22
Q ss_pred CCCCCccEEEeCccchh-ccccceeecCHHHHHHHHhcCCc-------cc--------------ccCCCcHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSF-GSMGGYVAGSKSTIDYIRANSHV-------RS--------------YATSMPPPVAMQILTS 410 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~-G~~GG~v~gs~~li~~l~~~~~~-------~~--------------~s~s~~P~~~aaalaa 410 (430)
+...++|++++|.+|.+ |.+||++...++..+.+.....+ +. ...+++.+.++++.++
T Consensus 219 ~~~~gvD~~~~s~hK~l~g~pG~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~a 298 (406)
T TIGR01814 219 LHDWGVDFACWCTYKYLNAGPGAGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGS 298 (406)
T ss_pred cccCCCCEEEEcCccccCCCCCeEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHH
Confidence 32235799999999987 45565544333333222211000 00 0233555667777779
Q ss_pred HHHHHccCCchHHHhhh
Q psy2206 411 MRIIMGLENGDEGNVRH 427 (430)
Q Consensus 411 L~~l~~~~~~~~~~~r~ 427 (430)
|+.+.+. +.+..++++
T Consensus 299 l~~~~~~-g~~~i~~~~ 314 (406)
T TIGR01814 299 LDIFDQA-GMEALRKKS 314 (406)
T ss_pred HHHHHhc-CHHHHHHHH
Confidence 9998655 334444443
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.7e-10 Score=113.24 Aligned_cols=107 Identities=16% Similarity=0.223 Sum_probs=80.9
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|++|++.++.|.+.++++|+++|++||+++|+||+|+.++++. .+. ..+||+++|+||.++.
T Consensus 136 ~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~---------p~~-~g~di~i~S~sK~~~g~~d~ 205 (366)
T PRK08247 136 NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQR---------PLE-EGADIVIHSATKYLGGHNDV 205 (366)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccC---------chh-cCCcEEEeecceeccCCCce
Confidence 45689999999999999999999999999999999999997665431 111 2468999999999974
Q ss_pred ccceeecC-HHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAGS-KSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~gs-~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.||+++++ +++++.++.... ..+..++|..++.++.+|+.+
T Consensus 206 ~~G~iv~~~~~l~~~~~~~~~--~~g~~~s~~~a~l~~~~l~tl 247 (366)
T PRK08247 206 LAGLVVAKGQELCERLAYYQN--AAGAVLSPFDSWLLIRGMKTL 247 (366)
T ss_pred eeeEEecChHHHHHHHHHHHH--hcCCCCChHHHHHHHhccCcH
Confidence 57888886 677777664321 124456777777776666543
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.5e-09 Score=111.43 Aligned_cols=91 Identities=16% Similarity=0.192 Sum_probs=72.5
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+.+ +++|+++|+++|++||+||+|+...+++....+....+. .+.+|+++||||++|++|
T Consensus 162 ~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~--~~~vi~~~s~SK~~~~pG 239 (387)
T PRK07683 162 TRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEM--REKTIVINGLSKSHSMTG 239 (387)
T ss_pred ceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCC--cCCeEEEeeccccccCcc
Confidence 456778889999999876 889999999999999999999876665433333332222 234799999999999999
Q ss_pred ---ceeecCHHHHHHHHhc
Q psy2206 374 ---GYVAGSKSTIDYIRAN 389 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~ 389 (430)
||+++++++++.+...
T Consensus 240 lRiG~i~~~~~l~~~~~~~ 258 (387)
T PRK07683 240 WRIGFLFAPSYLAKHILKV 258 (387)
T ss_pred ceeEEEEcCHHHHHHHHHH
Confidence 9999999999988764
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-09 Score=111.64 Aligned_cols=92 Identities=16% Similarity=0.283 Sum_probs=70.2
Q ss_pred eEEEEEcCccCCCCccc---CHHHHHHHHHhcCcEEEEeccccccccCCC-CCccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIV---RLPEIVRLKNKYKAYLYVDEAHSIGALGPT-GRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~---~L~~I~~La~~y~~~LivDEAh~~G~lG~~-GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
+++|++..+.+++|.+. ++.+|+++|++|++++|+||+|....++.. ...+....+. .+..|+++||||+||++
T Consensus 163 ~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~--~~~~i~~~SfSK~~~~p 240 (384)
T PRK12414 163 TRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHREL--AERSVIVSSFGKSYHVT 240 (384)
T ss_pred cEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCc--cCcEEEEecccccccCc
Confidence 45667778999999985 488899999999999999999987655421 1122222122 23469999999999999
Q ss_pred c---ceeecCHHHHHHHHhcC
Q psy2206 373 G---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~ 390 (430)
| ||+++++++++.+....
T Consensus 241 GlRiG~~v~~~~l~~~l~~~~ 261 (384)
T PRK12414 241 GWRVGYCLAPAELMDEIRKVH 261 (384)
T ss_pred cceEEEEecCHHHHHHHHHHH
Confidence 9 99999999999887744
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=111.64 Aligned_cols=120 Identities=21% Similarity=0.206 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+++ ++++|+++.+++++|.+.|+++|.++|++||+++++|++|++|...- .
T Consensus 128 ~~~l~~~l~~-------------~~~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~---------~ 185 (381)
T PRK02948 128 LVDLERAITP-------------DTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPI---------D 185 (381)
T ss_pred HHHHHHhcCC-------------CCEEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhcccccc---------C
Confidence 5777766543 35689999999999999999999999999999999999998764321 1
Q ss_pred CCCCCccEEEeCccchhcccc-ceeecCHHH-HHHHHh---cCCcccccCCCcHHHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGSMG-GYVAGSKST-IDYIRA---NSHVRSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~l-i~~l~~---~~~~~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
+....+|+++.|++|.+|..| |++..++++ ...+.. ....+..+ +++++..+++.++++.+.
T Consensus 186 ~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~-t~~~~~~~a~~~al~~~~ 252 (381)
T PRK02948 186 VFEMGIDSLSVSAHKIYGPKGVGAVYINPQVRWKPVFPGTTHEKGFRPG-TVNVPGIAAFLTAAENIL 252 (381)
T ss_pred cccCCCCEEEecHHhcCCCCcEEEEEEcCCCCCCCcccCCCCCCCcCCC-CccHHHHHHHHHHHHHHH
Confidence 112246899999999999777 887777654 111110 01122333 345555556666776653
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.8e-10 Score=110.03 Aligned_cols=125 Identities=17% Similarity=0.178 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccc-cCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGA-LGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~-lG~~GrG~~e~~ 351 (430)
+++|+++|++. +..+.++++.+ +.+|.+.|+++|+++|++||++|++||||+.++ +++......
T Consensus 142 ~~~l~~~l~~~----------~~~k~v~l~~p--~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~--- 206 (294)
T cd00615 142 PETFKKALIEH----------PDAKAAVITNP--TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSA--- 206 (294)
T ss_pred HHHHHHHHHhC----------CCceEEEEECC--CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcch---
Confidence 67788877652 11244555544 458999999999999999999999999998643 222111111
Q ss_pred CCCCCCccEEEeCccchhcc--ccceeecCHHHH--HHHHhcCCcccccCCCcHHHHHHHHHHHHHHH
Q psy2206 352 GIDPREVDILMGTYTKSFGS--MGGYVAGSKSTI--DYIRANSHVRSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~--~GG~v~gs~~li--~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
. ..++|+++.|++|+++. .||++..+.+.+ +.+.... ....+++++...+++...+++.+.
T Consensus 207 -~-~~~~div~~S~hK~l~g~~~~~~l~~~~~~~~~~~~~~~~-~~~~ttsps~~~~asl~~a~~~~~ 271 (294)
T cd00615 207 -A-MAGADIVVQSTHKTLPALTQGSMIHVKGDLVNPDRVNEAL-NLHQSTSPSYLILASLDVARAMMA 271 (294)
T ss_pred -h-hcCCcEEEEchhcccchHhHHHHHHhCCCcCCHHHHHHHH-HHHCCCCcHHHHHHHHHHHHHHHH
Confidence 1 13579999999999974 356665554422 2222211 122355667777777777887774
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=112.95 Aligned_cols=107 Identities=16% Similarity=0.170 Sum_probs=83.3
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|+++++.+++|.+.|+++|+++|+++|++||+||+|..++... ++. ..+||++.|+||.++.
T Consensus 136 ~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~---------pl~-~gaDivv~S~sK~l~G~~~~ 205 (382)
T TIGR02080 136 KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQN---------PLA-LGADLVLHSCTKYLNGHSDV 205 (382)
T ss_pred CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccCC---------chh-hCCCEEEeecceeccCCCCc
Confidence 35689999999999999999999999999999999999997664321 111 2358999999999863
Q ss_pred ccceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.+|++++ ++++++.++.... ..+..++|..++.++..++.+
T Consensus 206 ~~G~i~~~~~~~~~~l~~~~~--~~g~~~sp~~a~l~lr~l~tl 247 (382)
T TIGR02080 206 IAGAVIAKDPQVAEELAWWAN--NLGVTGGAFDSYLTLRGLRTL 247 (382)
T ss_pred eeEEEEeCCHHHHHHHHHHHH--ccCCCCCHHHHHHHHcccchH
Confidence 3687655 7888887765332 236678999999888887766
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.8e-09 Score=109.50 Aligned_cols=94 Identities=23% Similarity=0.310 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+.+ ++.+|++..+.+++|.+.|+++|.++|++||++|++|++|+.|.+. +.
T Consensus 129 ~~~l~~~l~~-------------~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~---------~~ 186 (373)
T cd06453 129 LEALEKLLTE-------------RTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMP---------VD 186 (373)
T ss_pred HHHHHHHhcC-------------CceEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCcee---------ee
Confidence 5777777643 3568888999999999999999999999999999999999865431 11
Q ss_pred CCCCCccEEEeCccchhcccc-ceeecCHHHHHHHHh
Q psy2206 353 IDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIRA 388 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~~ 388 (430)
+....+|+++.|++|.++++| |++++++++++.++.
T Consensus 187 ~~~~~~d~~~~s~~K~~~~~g~g~~~~~~~~~~~~~~ 223 (373)
T cd06453 187 VQDLGCDFLAFSGHKMLGPTGIGVLYGKEELLEEMPP 223 (373)
T ss_pred ccccCCCEEEeccccccCCCCcEEEEEchHHhhcCCC
Confidence 111246899899999998776 899999998887664
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.2e-10 Score=113.20 Aligned_cols=117 Identities=14% Similarity=0.151 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
++++++++++ ++++|++|++.+++|.+.|+++|+++|+++|+++|+||+++.+.++. .
T Consensus 126 ~~~l~~~i~~-------------~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~~-------p-- 183 (364)
T PRK07269 126 EEELIAAIEE-------------DTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQR-------P-- 183 (364)
T ss_pred HHHHHHhcCc-------------CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCC-------c--
Confidence 5666666543 46789999999999999999999999999999999999987654321 1
Q ss_pred CCCCCccEEEeCccchhcc----ccceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGS----MGGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~----~GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
+. ...||++.|++|.++. .||+|++ ++++++.++... . ..+..++|..++.++..|+.+
T Consensus 184 l~-~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~-~-~~G~~~s~~~a~l~~~~L~tL 247 (364)
T PRK07269 184 IE-LGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNL-N-TTGAVLSPFDSYLLMRGLKTL 247 (364)
T ss_pred hh-hCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHH-H-HhCCCCCHHHHHHHHcCCCcH
Confidence 21 3468999999999974 5788776 577877776422 1 235678999999888887765
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-09 Score=113.43 Aligned_cols=137 Identities=18% Similarity=0.194 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhCCCCCC--CCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcC--cE
Q psy2206 253 TERSKESVKQSGCALCS--PSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYK--AY 328 (430)
Q Consensus 253 ~~a~~~ai~~yG~g~~~--sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~--~~ 328 (430)
...+.+.+.+||+...- ...+++++++|++ ++++|++|++.|+.|.+.|+++|+++|++++ ++
T Consensus 115 ~~l~~~~l~~~Gi~v~~vd~~d~~~l~~~l~~-------------~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~ 181 (395)
T PRK08114 115 QDFCSKILSKLGVTTTWFDPLIGADIAKLIQP-------------NTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAV 181 (395)
T ss_pred HHHHHHHHHhcCcEEEEECCCCHHHHHHhcCC-------------CceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCE
Confidence 34445667788874322 1225677777643 4679999999999999999999999999984 99
Q ss_pred EEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----ccceeecCHHHHHHHHhcCCcccccCCCcHHHH
Q psy2206 329 LYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS----MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVA 404 (430)
Q Consensus 329 LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~----~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~ 404 (430)
++||.+++.+++ +......+||++.|.+|.++. .+|+++.++++.+.++... ...+..++|..+
T Consensus 182 lvVDnT~a~p~~----------~~pl~~GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~--~~~G~~~~p~~a 249 (395)
T PRK08114 182 IMIDNTWAAGVL----------FKALDFGIDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENS--YLMGQMVDADTA 249 (395)
T ss_pred EEEECCCccccc----------cCHHHcCCcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHH--HhccCCCCHHHH
Confidence 999999987653 111123579999999999964 4588888888766665432 234678899999
Q ss_pred HHHHHHHHHH
Q psy2206 405 MQILTSMRII 414 (430)
Q Consensus 405 aaalaaL~~l 414 (430)
+.++..|+.+
T Consensus 250 ~l~~rgl~TL 259 (395)
T PRK08114 250 YMTSRGLRTL 259 (395)
T ss_pred HHHHcCCCcH
Confidence 9887776654
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.5e-09 Score=109.86 Aligned_cols=113 Identities=19% Similarity=0.251 Sum_probs=76.8
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC--CCccce---ecCCCCCCccEEEeCccch
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT--GRGVTE---YFGIDPREVDILMGTYTKS 368 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~--GrG~~e---~~g~~~~~~dIv~~TlSKa 368 (430)
+++|++.++.+++|.+.+ +++|+++|++|+++||+||+|....+... ...... ..+....+..|+++||||+
T Consensus 166 ~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~ 245 (393)
T TIGR03538 166 CQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKR 245 (393)
T ss_pred ceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhh
Confidence 345666689999999988 88899999999999999999986544321 111111 1111112346999999999
Q ss_pred hcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 369 FGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 369 ~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
|+++| ||+++++++++.+..... + .+.+.+++...++.+++
T Consensus 246 ~~~~GlRvG~~i~~~~l~~~~~~~~~-~-~~~~~~~~~q~~~~~~l 289 (393)
T TIGR03538 246 SNLPGLRSGFVAGDAEILKAFLRYRT-Y-HGCAMPIPTQLASIAAW 289 (393)
T ss_pred cCCcccceEEEecCHHHHHHHHHHHH-h-hccCcCHHHHHHHHHHh
Confidence 99999 999999999988776432 1 22334444444444444
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.5e-09 Score=109.94 Aligned_cols=123 Identities=15% Similarity=0.215 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEecccccccc-CCCCCccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGAL-GPTGRGVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~l-G~~GrG~~ 348 (430)
+++|++++++. +.++++|++..+.+++|.+.+ +++|+++|++||+++|+||+|+...+ +.....+.
T Consensus 153 ~~~l~~~~~~~----------~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~ 222 (391)
T PRK07309 153 PEMLEKAILEQ----------GDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIA 222 (391)
T ss_pred HHHHHHHhhcc----------CCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHH
Confidence 57777776542 113456666677999998876 88999999999999999999986655 22111222
Q ss_pred eecCCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 349 EYFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 349 e~~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
+. .+ +..|+++||||+||++| ||+++++++++.+.... .+...+ .+++...++.+.|
T Consensus 223 ~~---~~-~~~i~~~S~SK~~g~~GlRvG~~v~~~~~~~~~~~~~-~~~~~~-~~~~~q~~~~~~l 282 (391)
T PRK07309 223 EY---LP-DQTILINGLSKSHAMTGWRIGLIFAPAEFTAQLIKSH-QYLVTA-ATTMAQFAAVEAL 282 (391)
T ss_pred Hh---cc-CCEEEEecChhhccCccceeEEEEeCHHHHHHHHHHH-hhcccC-CChHHHHHHHHHH
Confidence 21 22 34699999999999999 99999999999888643 333332 3344333344444
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-09 Score=109.99 Aligned_cols=91 Identities=19% Similarity=0.185 Sum_probs=68.4
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccc--ee--cCCCCCCccEEEeCccchh
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT--EY--FGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~--e~--~g~~~~~~dIv~~TlSKa~ 369 (430)
+++|++.++.+|+|.+.+ +++|+++|++||++||+||+|+...+. +.... .. .+.. .+..|+++||||+|
T Consensus 149 ~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~ 225 (364)
T PRK07865 149 PALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWD--AEPVSILDPRVCGGD-HTGLLAVHSLSKQS 225 (364)
T ss_pred ceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccC--CCCCccccccccCCc-cceEEEEeechhcc
Confidence 456667789999998876 788899999999999999999854442 22111 11 0111 23479999999999
Q ss_pred cccc---ceeecCHHHHHHHHhcC
Q psy2206 370 GSMG---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 370 G~~G---G~v~gs~~li~~l~~~~ 390 (430)
|++| ||+++++++++.++...
T Consensus 226 ~~~GlRiG~i~~~~~~~~~~~~~~ 249 (364)
T PRK07865 226 NLAGYRAGFVAGDPALVAELLEVR 249 (364)
T ss_pred CCCceeeEEEecCHHHHHHHHHHH
Confidence 9888 99999999999887643
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-09 Score=109.15 Aligned_cols=107 Identities=23% Similarity=0.312 Sum_probs=75.6
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhc--CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKY--KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y--~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G- 373 (430)
..+|++..+.+++|.+.+.+++.++++.+ +++||+||+|+.- +..|. ...+... .+..|+++||||++|++|
T Consensus 156 ~~~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~--~~~~~--~~~~~~~-~~~~i~~~SfSK~~g~~Gl 230 (369)
T PRK08153 156 APLVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCET--APAGA--APPIDTD-DPNVIRMRTFSKAYGLAGA 230 (369)
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhh--cCccc--chhhhhc-CCCEEEEecchHhccCcch
Confidence 34555567899999999988887777654 8999999999743 22221 1111111 234689999999999999
Q ss_pred --ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 374 --GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 374 --G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
||+++++++++.+...... + +.+++..+++.++|+
T Consensus 231 RiG~~v~~~~~~~~l~~~~~~--~--~~s~~~q~~~~~~l~ 267 (369)
T PRK08153 231 RVGYAIGAPGTIKAFDKVRNH--F--GMNRIAQAAALAALK 267 (369)
T ss_pred heeeeecCHHHHHHHHHhhcC--C--CCCHHHHHHHHHHhc
Confidence 9999999999988875432 2 356666666666663
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.2e-09 Score=110.88 Aligned_cols=107 Identities=17% Similarity=0.177 Sum_probs=81.8
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|++|++.|++|.+.|+++|.++|+++|+++|+||+|..+.... .+. ..+||++.|++|.++.
T Consensus 137 ~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~~---------pl~-~gaDivv~S~tK~l~G~~d~ 206 (386)
T PRK08045 137 KPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQN---------PLA-LGADLVLHSCTKYLNGHSDV 206 (386)
T ss_pred CCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCC---------chh-hCCCEEEeecceeccCCCCc
Confidence 35688999999999999999999999999999999999997654311 111 2458999999999963
Q ss_pred ccceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.||++++ ++++++.++.... ..+..++|..++.++.+|+.+
T Consensus 207 ~~G~vi~~~~~~~~~l~~~~~--~~g~~~~p~~~~l~~rgl~tl 248 (386)
T PRK08045 207 VAGVVIAKDPDVVTELAWWAN--NIGVTGGAFDSYLLLRGLRTL 248 (386)
T ss_pred eeEEEEeCcHHHHHHHHHHHH--hcCCCCCHHHHHHHHhhhccH
Confidence 3576655 6888887764332 235568899888888887665
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-09 Score=112.17 Aligned_cols=134 Identities=19% Similarity=0.242 Sum_probs=97.3
Q ss_pred HHHHHHHhCCCCCCC--CCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEec
Q psy2206 256 SKESVKQSGCALCSP--SAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDE 333 (430)
Q Consensus 256 ~~~ai~~yG~g~~~s--r~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDE 333 (430)
..+.+..+|....-. ..+++|++++. ++++|++|++.++.+.+.|+++|.++|++||++||+|+
T Consensus 119 ~~~~~~~~G~~v~~vd~~d~~~l~~~i~--------------~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~ 184 (389)
T PRK05968 119 FETILKRMGVEVDYVDGRDEEAVAKALP--------------GAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDN 184 (389)
T ss_pred HHHHHHHcCceEEEeCCCCHHHHHHhcc--------------cCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEEC
Confidence 344556666533211 12566665541 24578889999999999999999999999999999999
Q ss_pred cccccccCCCCCccceecCCCCCCccEEEeCccchhcc----ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHH
Q psy2206 334 AHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS----MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILT 409 (430)
Q Consensus 334 Ah~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~----~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaala 409 (430)
+|+.+++.. . +. ..+||++.|++|.++. .||++++++++++.++.....+ ....++|..++..+.
T Consensus 185 a~a~~~~~~---p------~~-~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~-~g~~~~~~~A~~~l~ 253 (389)
T PRK05968 185 SWASPVFQR---P------IT-LGVDLVIHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPY-LGAKLSPFEAWLLLR 253 (389)
T ss_pred CCcchhccC---c------hh-cCCcEEEeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHh-CCCCCChHHHHHHHc
Confidence 998775432 1 11 2458999999999975 3689999999998877533222 345688888888888
Q ss_pred HHHHH
Q psy2206 410 SMRII 414 (430)
Q Consensus 410 aL~~l 414 (430)
+|+.+
T Consensus 254 ~L~tl 258 (389)
T PRK05968 254 GLRTL 258 (389)
T ss_pred ccCcH
Confidence 77665
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-09 Score=111.55 Aligned_cols=134 Identities=18% Similarity=0.217 Sum_probs=91.3
Q ss_pred HHHHHHHhCCCCCCCC--CHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEec
Q psy2206 256 SKESVKQSGCALCSPS--APSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDE 333 (430)
Q Consensus 256 ~~~ai~~yG~g~~~sr--~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDE 333 (430)
..+.+.++|....-.. .++++++++++ ++++|++|++.|++|.+.|+++|+++|++||+++|+|+
T Consensus 102 ~~~~~~~~G~~v~~vd~~d~~~le~~i~~-------------~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~ 168 (378)
T TIGR01329 102 LTQVVPRSGVVVVHVDTTDLDKVKAALGP-------------KTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDN 168 (378)
T ss_pred HHHHHHHcCcEEEEeCCCCHHHHHHhcCc-------------CceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEEC
Confidence 3445556665432222 25666666542 46799999999999999999999999999999999999
Q ss_pred cccccccCCCCCccceecCCCCCCccEEEeCccchhcc----ccceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHH
Q psy2206 334 AHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS----MGGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQIL 408 (430)
Q Consensus 334 Ah~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~----~GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaal 408 (430)
+|+.+.... . +. ..+||++.|++|.++. .||++++ ++++.+.++.... ..+..++|..++.++
T Consensus 169 a~~~~~~~~---~------l~-~g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~--~~G~~~~~~~a~l~~ 236 (378)
T TIGR01329 169 TMMSPLLCN---P------LE-LGADIVYHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQN--STGSGLAPFDCWLLL 236 (378)
T ss_pred CCcccccCC---h------hh-cCCcEEEEecceeccCCccceeEEEEeCcHHHHHHHHHHHH--hcCCcCCHHHHHHHH
Confidence 997654211 1 11 2458999999999864 3788866 5666566654321 135567787777655
Q ss_pred HHHHHH
Q psy2206 409 TSMRII 414 (430)
Q Consensus 409 aaL~~l 414 (430)
..++.+
T Consensus 237 ~~l~tl 242 (378)
T TIGR01329 237 RGIKTL 242 (378)
T ss_pred ccCCCH
Confidence 554433
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.5e-09 Score=112.92 Aligned_cols=113 Identities=12% Similarity=0.140 Sum_probs=73.7
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCC-CccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTG-RGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~G-rG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
+++|++..+.+++|.+.+ +.+|+++|++||++||+||+|...+++..- ..+... ......|+++||||+|+++
T Consensus 205 ~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~---~~~~~vi~l~SfSK~f~~p 281 (462)
T PLN02187 205 TVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKF---ASIVPVLTLAGISKGWVVP 281 (462)
T ss_pred cEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHh---ccCCcEEEEecchhhcCCc
Confidence 456666677899999987 889999999999999999999876664311 111111 1112368999999999999
Q ss_pred c---ceeecC-H-H---HHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 373 G---GYVAGS-K-S---TIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 373 G---G~v~gs-~-~---li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
| ||++++ + . +++.+......+..+++.+.+..+++.++|+
T Consensus 282 GlRiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~ 329 (462)
T PLN02187 282 GWKIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALPAILE 329 (462)
T ss_pred cceeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHh
Confidence 9 999873 3 2 3344444332322333334454455555553
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.9e-09 Score=106.77 Aligned_cols=80 Identities=20% Similarity=0.189 Sum_probs=58.4
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
++.|++..+.+++|.+.+ +.+|+++|++|+++||+||+|..-+++..-......+ ...+..|+++||||.|+++|
T Consensus 171 ~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~--~~~~~vi~~~SfSK~f~~pG 248 (409)
T PLN00143 171 TIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLF--ASIVPVITLGSISKRWMIPG 248 (409)
T ss_pred CEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhh--cccCcEEEEccchhhcCCCc
Confidence 345555567999999998 7888888999999999999998655532100111111 11234689999999999999
Q ss_pred ---ceeec
Q psy2206 374 ---GYVAG 378 (430)
Q Consensus 374 ---G~v~g 378 (430)
||+++
T Consensus 249 lRvG~~v~ 256 (409)
T PLN00143 249 WGLGWLVT 256 (409)
T ss_pred cceEEEEe
Confidence 99988
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.6e-09 Score=107.48 Aligned_cols=94 Identities=18% Similarity=0.130 Sum_probs=68.9
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCcccee--cCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEY--FGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~--~g~~~~~~dIv~~TlSKa~G 370 (430)
++++|++.++.+|+|.+.+ +++|+++|++||+++|+||+|..-.++......... .+.. .+..|+++||||+||
T Consensus 142 ~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~-~~~vi~~~S~SK~~~ 220 (357)
T TIGR03539 142 GPDLIWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGD-HTGLLAVHSLSKRSN 220 (357)
T ss_pred CccEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCc-cccEEEEeccccccC
Confidence 3567778899999999887 777999999999999999999643333211111110 1111 134699999999998
Q ss_pred ccc---ceeecCHHHHHHHHhcC
Q psy2206 371 SMG---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 371 ~~G---G~v~gs~~li~~l~~~~ 390 (430)
++| ||+++++++++.++...
T Consensus 221 ~~G~R~G~~i~~~~~~~~~~~~~ 243 (357)
T TIGR03539 221 LAGYRAGFVAGDPALVAELLTVR 243 (357)
T ss_pred CCceeEEEEecCHHHHHHHHHHH
Confidence 887 99999999999887644
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.8e-09 Score=106.21 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=67.2
Q ss_pred EEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc--
Q psy2206 299 LIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-- 373 (430)
Q Consensus 299 lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-- 373 (430)
+|++..+.+++|.+.+ +.+|+++|++||+++|+||+|...+.. ..+....+ ..+.+|+++||||+||++|
T Consensus 128 ~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~---~~~~~~~~--~~~~~i~~~S~SK~~g~~G~R 202 (330)
T TIGR01140 128 VLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPD---ASLAPQAA--RFPGLVVLRSLTKFFGLAGLR 202 (330)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCc---cchhhHhc--cCCCEEEEEecchhhcCchhh
Confidence 5666777999999999 777888889999999999999744332 12211111 1245799999999999888
Q ss_pred -ceeecCHHHHHHHHhcC
Q psy2206 374 -GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 374 -G~v~gs~~li~~l~~~~ 390 (430)
||+++++++++.+....
T Consensus 203 ~G~i~~~~~~~~~l~~~~ 220 (330)
T TIGR01140 203 LGFVVAHPALLARLREAL 220 (330)
T ss_pred hhheeCCHHHHHHHHhcC
Confidence 99999999999988754
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.8e-09 Score=108.16 Aligned_cols=103 Identities=23% Similarity=0.231 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccce
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE 349 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e 349 (430)
+++|++++++ ++++|++..+.+++|.+.+ +++|+++|++||+++|+||+|+....+. +... .
T Consensus 153 ~~~l~~~~~~-------------~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~-~~~~-~ 217 (386)
T PRK07550 153 PAAAEALITP-------------RTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGG-GAPH-D 217 (386)
T ss_pred HHHHHHHhcc-------------cCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCC-CCCc-c
Confidence 5667777654 1234444567899999887 8899999999999999999997543221 1111 1
Q ss_pred ecCC-CCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcC
Q psy2206 350 YFGI-DPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 350 ~~g~-~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~ 390 (430)
.+.. ...+..|++.||||++|++| ||+++++++++.+....
T Consensus 218 ~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~~~~~~~~~~ 262 (386)
T PRK07550 218 LFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPARIAEIEKFM 262 (386)
T ss_pred hhhCCCccccEEEEecchhhccCcccceEeeecCHHHHHHHHHHH
Confidence 1111 11234688999999999887 99999999998887644
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2e-09 Score=111.59 Aligned_cols=134 Identities=16% Similarity=0.130 Sum_probs=97.6
Q ss_pred HHHHHHHhCCCCCCC--CCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEec
Q psy2206 256 SKESVKQSGCALCSP--SAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDE 333 (430)
Q Consensus 256 ~~~ai~~yG~g~~~s--r~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDE 333 (430)
+.+.+.++|....-- ...+.|++++++ ++++|++|++.|+.+.+.||++|+++|+++|+++++|+
T Consensus 120 ~~~~l~~~Gi~v~~vd~~~~e~l~~al~~-------------~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~ 186 (395)
T PRK05967 120 CDTMLKRLGVEVEYYDPEIGAGIAKLMRP-------------NTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDN 186 (395)
T ss_pred HHHHHHhcCeEEEEeCCCCHHHHHHhcCc-------------CceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEEC
Confidence 445566677633211 113456665543 46799999999999999999999999999999999999
Q ss_pred cccccccCCCCCccceecCCCCCCccEEEeCccchhcc----ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHH
Q psy2206 334 AHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS----MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILT 409 (430)
Q Consensus 334 Ah~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~----~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaala 409 (430)
+++.+++- ..+. ..+||++.|++|.++. .||++++++++.+.++.... ..+..++|..|+.++.
T Consensus 187 t~a~p~~~---------~pl~-~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~--~~G~~~~p~da~l~~r 254 (395)
T PRK05967 187 TWATPLYF---------RPLD-FGVDISIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHG--TLGLCAGPDDTYQILR 254 (395)
T ss_pred CccCceec---------ChhH-cCCCEEEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHH--HcCCCCCHHHHHHHHc
Confidence 99766432 1222 3569999999999863 45888888887666653222 2467799999999988
Q ss_pred HHHHH
Q psy2206 410 SMRII 414 (430)
Q Consensus 410 aL~~l 414 (430)
.|+.+
T Consensus 255 gl~Tl 259 (395)
T PRK05967 255 GLRTM 259 (395)
T ss_pred CcccH
Confidence 87766
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.1e-09 Score=107.55 Aligned_cols=92 Identities=20% Similarity=0.267 Sum_probs=69.5
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCC-CCccEEEeCccchhcc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDP-REVDILMGTYTKSFGS 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~-~~~dIv~~TlSKa~G~ 371 (430)
+..+|++..+.+++|.+.+ +.+|+++|++|+++||+||+|+...++. ........+.. .+..|.++||||+||+
T Consensus 175 ~~~~i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~--~~~~~~~~~~~~~~~~i~~~S~SK~~~~ 252 (403)
T PRK08636 175 KPKYVVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDG--YKTPSILEVEGAKDVAVESYTLSKSYNM 252 (403)
T ss_pred CceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCC--CCCCChhcCCCccccEEEEEecccccCC
Confidence 3557777788999999988 7888888999999999999998655542 11111111211 1345778999999999
Q ss_pred cc---ceeecCHHHHHHHHhc
Q psy2206 372 MG---GYVAGSKSTIDYIRAN 389 (430)
Q Consensus 372 ~G---G~v~gs~~li~~l~~~ 389 (430)
+| ||+++++++++.+...
T Consensus 253 ~GlRiG~iv~~~~li~~~~~~ 273 (403)
T PRK08636 253 AGWRVGFVVGNKKLVGALKKI 273 (403)
T ss_pred ccceeeeeeCCHHHHHHHHHH
Confidence 99 9999999999988764
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.9e-09 Score=108.98 Aligned_cols=107 Identities=19% Similarity=0.152 Sum_probs=80.2
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc---
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM--- 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~--- 372 (430)
++++|+++++.+++|.+.++++|+++|++||++||+||+|..+..- ..+. ..+||++.|++|.++..
T Consensus 145 ~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~---------~pl~-~gaDivv~S~tK~l~g~~~~ 214 (405)
T PRK08776 145 SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQ---------KPLE-FGADLVLHSTTKYINGHSDV 214 (405)
T ss_pred CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccccC---------Cccc-ccCCEEEecCceeecCCCCc
Confidence 3568899999999999999999999999999999999999764321 1111 24589999999999743
Q ss_pred -cceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 373 -GGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 373 -GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
||++++ ++++.+.++..... .+..++|..+++++..++.+
T Consensus 215 ~~G~vv~~~~~l~~~l~~~~~~--~g~~~s~~~a~l~~~gl~tl 256 (405)
T PRK08776 215 VGGAVVARDAELHQQLVWWANA--LGLTGSPFDAFLTLRGLRTL 256 (405)
T ss_pred eEEEEEeCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHhhhCcH
Confidence 577655 67787766543221 23347889888888777666
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.1e-09 Score=105.54 Aligned_cols=100 Identities=22% Similarity=0.339 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
++++++.++.. ++++|++.++.+++|.+.+.+++.+++++++.++|+||+|.. +.+. .......
T Consensus 137 ~~~l~~~~~~~------------~~k~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~-~~~~---~~~~~~~ 200 (351)
T PRK14807 137 VGSFIKVIEKY------------QPKLVFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFE-FYGN---TIVDVIN 200 (351)
T ss_pred HHHHHHHhhcc------------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchh-hccc---chHHHhh
Confidence 56677666431 244566668999999999999999999998999999999953 3332 1111111
Q ss_pred CCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcC
Q psy2206 353 IDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~ 390 (430)
..+..|+++||||++|++| ||+++++++++.++...
T Consensus 201 --~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~~~~~ 239 (351)
T PRK14807 201 --EFENLIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVK 239 (351)
T ss_pred --hCCCEEEEecchHhcccchhceeeeecCHHHHHHHHHcc
Confidence 1234799999999999999 99999999999988754
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.4e-09 Score=107.94 Aligned_cols=111 Identities=12% Similarity=0.156 Sum_probs=75.1
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhc-CcEEEEeccccccccCCCC-Ccccee-cCCCCCCccEEEeCccchhc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKY-KAYLYVDEAHSIGALGPTG-RGVTEY-FGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y-~~~LivDEAh~~G~lG~~G-rG~~e~-~g~~~~~~dIv~~TlSKa~G 370 (430)
+++|++.++.+++|.+.+ +++|+++|++| ++++|+||+|+...+.... ..+... .+. .+..|+++||||.||
T Consensus 167 ~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~--~~~vi~~~S~SK~~~ 244 (402)
T PRK06107 167 TRWLILNAPSNPTGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPEL--RDRVLVTNGVSKTYA 244 (402)
T ss_pred ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCc--cCCEEEEeccchhhc
Confidence 345566678999998886 67888889998 9999999999854453211 111111 111 235799999999999
Q ss_pred ccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 371 SMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 371 ~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
++| ||+++++++++.+...... . +...+.+..+++..+|
T Consensus 245 ~pGlRiG~~~~~~~~~~~~~~~~~~-~-~~~~s~~~q~~~~~~l 286 (402)
T PRK06107 245 MTGWRIGYAAGPADLIAAINKLQSQ-S-SSCPSSISQAAAAAAL 286 (402)
T ss_pred CcccceeeeecCHHHHHHHHHHHHh-c-ccCCChHHHHHHHHHh
Confidence 899 9999999999988874322 1 2223444444444444
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.5e-09 Score=109.03 Aligned_cols=134 Identities=16% Similarity=0.151 Sum_probs=93.3
Q ss_pred HHHHHHHhCCCCCC--CCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEec
Q psy2206 256 SKESVKQSGCALCS--PSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDE 333 (430)
Q Consensus 256 ~~~ai~~yG~g~~~--sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDE 333 (430)
..+.+.++|....- ...+++|++++++ ++++|++|.+.+++|.+.|+++|+++|+++|+++|+||
T Consensus 105 ~~~~~~~~G~~v~~v~~~d~~~l~~ai~~-------------~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~ 171 (377)
T PRK07671 105 MTKVLNRFGIEHTFVDTSNLEEVEEAIRP-------------NTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDN 171 (377)
T ss_pred HHHHHhcCCeEEEEECCCCHHHHHHhcCC-------------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEEC
Confidence 34445556653221 1125566665532 45689999999999999999999999999999999999
Q ss_pred cccccccCCCCCccceecCCCCCCccEEEeCccchhcc----ccceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHH
Q psy2206 334 AHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS----MGGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQIL 408 (430)
Q Consensus 334 Ah~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~----~GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaal 408 (430)
+|+.+.++. . +. ..+||++.|++|.+|. .||+++. ++++++.++.... ..+..++|..++.++
T Consensus 172 a~~~~~~~~-------p--~~-~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~--~~g~~~~~~~a~l~~ 239 (377)
T PRK07671 172 TFMTPYWQS-------P--IS-LGADIVLHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQN--STGGILGPQDSWLLL 239 (377)
T ss_pred CCCccccCC-------h--hh-hCCeEEEecCcccccCCccceeEEEEeCcHHHHHHHHHHHH--hhcCCCCHHHHHHHH
Confidence 997654431 1 11 2458999999999974 4576554 6778877765332 235668888888777
Q ss_pred HHHHHH
Q psy2206 409 TSMRII 414 (430)
Q Consensus 409 aaL~~l 414 (430)
..++.+
T Consensus 240 ~~l~tl 245 (377)
T PRK07671 240 RGLKTL 245 (377)
T ss_pred cCcChH
Confidence 766554
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-09 Score=112.41 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=57.4
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
++++|++|++.||+|.+.|+++|.++|++||++||||++|+.+.+.. .+. ..+||++.|++|.+|..|
T Consensus 155 ~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~---------pl~-~GaDivv~S~tK~lgg~G 222 (436)
T PRK07812 155 NTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIR---------PLE-HGADIVVHSATKYLGGHG 222 (436)
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCC---------chh-cCCCEEEEecccccCCCC
Confidence 46799999999999999999999999999999999999998765421 122 356999999999998655
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.2e-09 Score=106.86 Aligned_cols=130 Identities=16% Similarity=0.248 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+++ ++++|++..+.+++|.+.|+++|.++|++||+++|+|++|++|... ++
T Consensus 127 ~~~l~~~~~~-------------~~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~---------~~ 184 (376)
T TIGR01977 127 PERIKRAIKT-------------NTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIP---------ID 184 (376)
T ss_pred HHHHHHhcCC-------------CCeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccC---------CC
Confidence 5667766532 3567888899999999999999999999999999999999987642 12
Q ss_pred CCCCCccEEEeCccchhccc-c-ce-eecCHHHHHHHHhcC---------------CcccccCCCcHHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGSM-G-GY-VAGSKSTIDYIRANS---------------HVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~-G-G~-v~gs~~li~~l~~~~---------------~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
+....+|+++.|++|.++.+ | |+ ++.+...+..+.... ..+. ..+.+...+++..++++.+
T Consensus 185 ~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~t~~~~~~~a~~~al~~~ 263 (376)
T TIGR01977 185 MTELAIDMLAFTGHKGLLGPQGTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFE-SGTLNTPGIAGLNAGIKFI 263 (376)
T ss_pred chhcCCCEEEecccccccCCCCceEEEEcCCcCcCceecCCCccccccccccccchhhcc-CCCCCHHHHHHHHHHHHHH
Confidence 22235799999999998643 3 34 444433222111100 0011 1234555666777889888
Q ss_pred HccCCchHHHhh
Q psy2206 415 MGLENGDEGNVR 426 (430)
Q Consensus 415 ~~~~~~~~~~~r 426 (430)
.+. +.+..+++
T Consensus 264 ~~~-g~~~~~~~ 274 (376)
T TIGR01977 264 EKI-GIANIAKK 274 (376)
T ss_pred HHh-CHHHHHHH
Confidence 655 43444444
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.89 E-value=9e-09 Score=103.59 Aligned_cols=87 Identities=21% Similarity=0.225 Sum_probs=64.1
Q ss_pred EEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc--
Q psy2206 299 LIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-- 373 (430)
Q Consensus 299 lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-- 373 (430)
+|++..+.+++|.+.+ +.+|+++|++++++||+||+|.... + ...+.. +.+.+..|+++||||+||++|
T Consensus 127 ~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~--~-~~s~~~---~~~~~~vi~~~SfSK~~gl~GlR 200 (330)
T PRK05664 127 VLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNT--P-QHSLAA---CAHRPGLIVLRSFGKFFGLAGAR 200 (330)
T ss_pred EEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCC--C-cccccc---cccCCCEEEEeeccccccCCCcc
Confidence 4444566899999998 5666666789999999999985321 1 111111 222234699999999999999
Q ss_pred -ceeecCHHHHHHHHhcCC
Q psy2206 374 -GYVAGSKSTIDYIRANSH 391 (430)
Q Consensus 374 -G~v~gs~~li~~l~~~~~ 391 (430)
||+++++++++.+.....
T Consensus 201 iG~~v~~~~l~~~~~~~~~ 219 (330)
T PRK05664 201 LGFVLAEPALLRALAELLG 219 (330)
T ss_pred eEEEEeCHHHHHHHHHhcC
Confidence 999999999999887543
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.5e-09 Score=109.89 Aligned_cols=118 Identities=24% Similarity=0.360 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++++ ++++|++|++.+++|.+.|+++|+++|++||++||+||+|+.+++.. .
T Consensus 133 ~e~le~ai~~-------------~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~~~-------p-- 190 (425)
T PRK06084 133 IAALEALIDE-------------RTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLCR-------P-- 190 (425)
T ss_pred HHHHHHHhcc-------------CCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCC-------h--
Confidence 5677777653 35688889999999999999999999999999999999998765421 1
Q ss_pred CCCCCccEEEeCccchhcc----ccceeecCHHHH--H----------------------------HH---HhcCCcccc
Q psy2206 353 IDPREVDILMGTYTKSFGS----MGGYVAGSKSTI--D----------------------------YI---RANSHVRSY 395 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~----~GG~v~gs~~li--~----------------------------~l---~~~~~~~~~ 395 (430)
+. ..+||++.|++|.+|. .||+++.+..+. + .+ +... ...+
T Consensus 191 ~~-~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~ 268 (425)
T PRK06084 191 FE-HGADIVVHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVP-LRNM 268 (425)
T ss_pred hh-cCCCEEEECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHH-HHhc
Confidence 11 2468999999999974 357777533210 0 00 0000 1124
Q ss_pred cCCCcHHHHHHHHHHHHHH
Q psy2206 396 ATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 396 s~s~~P~~~aaalaaL~~l 414 (430)
...++|..++.++..|+.+
T Consensus 269 g~~l~~~~a~l~lrgl~tl 287 (425)
T PRK06084 269 GAALSPFNAFLILQGLETL 287 (425)
T ss_pred CCCCCHHHHHHHHcCcCcH
Confidence 6778999999888877666
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.9e-09 Score=109.59 Aligned_cols=93 Identities=17% Similarity=0.188 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccce
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE 349 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e 349 (430)
+++|+++++.. + +++++++.++.+++|.+.+ +.+|+++|++||++||.||+|+.-.+.. .-...
T Consensus 159 ~~~l~~~~~~~----------~-~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~--~~~~s 225 (433)
T PRK06855 159 LDDLENKVKYN----------P-SIAGILLINPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNG--KKTVP 225 (433)
T ss_pred HHHHHHHHhcC----------C-CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCC--CCCCC
Confidence 67788777531 0 2344555578999999998 7778888999999999999998655532 11111
Q ss_pred ecCCCCCCccEEEeCccchhcccc---ceeec
Q psy2206 350 YFGIDPREVDILMGTYTKSFGSMG---GYVAG 378 (430)
Q Consensus 350 ~~g~~~~~~dIv~~TlSKa~G~~G---G~v~g 378 (430)
...+.++...|+++||||+|+++| ||+++
T Consensus 226 l~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~ 257 (433)
T PRK06855 226 LSEVIGDVPGIALKGISKELPWPGSRCGWIEV 257 (433)
T ss_pred HHHHcCcCCeEEEecCccccCCCcceEEEEEE
Confidence 111222223599999999999998 99986
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.4e-09 Score=103.90 Aligned_cols=106 Identities=21% Similarity=0.190 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCC-CCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSM-DGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm-~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~ 348 (430)
+++|++.+++....+ ..++++|++++++++ +|.+.| +++|.++|++||++|++||+|..+.....+....
T Consensus 120 ~~~l~~~i~~~~~~~------~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~ 193 (353)
T PLN02721 120 LDAIEAAIRPKGDDH------FPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVH 193 (353)
T ss_pred HHHHHHHHHhccCCC------CCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHH
Confidence 677888776421000 014568888887654 677766 7899999999999999999997553221121111
Q ss_pred eecCCCCCCccEEEeCccchhccccc-eeecCHHHHHHHHh
Q psy2206 349 EYFGIDPREVDILMGTYTKSFGSMGG-YVAGSKSTIDYIRA 388 (430)
Q Consensus 349 e~~g~~~~~~dIv~~TlSKa~G~~GG-~v~gs~~li~~l~~ 388 (430)
... ..+|.++.|+||+++.+.| ++++++++++.+..
T Consensus 194 ---~~~-~~~d~~~~s~sK~l~~~~G~~~~~~~~~~~~~~~ 230 (353)
T PLN02721 194 ---RLV-KAADSVSVCLSKGLGAPVGSVIVGSKSFIRKAKR 230 (353)
T ss_pred ---HHh-hhCCEEEEecccccCCceeeEEecCHHHHHhHHH
Confidence 111 2457788899999987544 57789999887655
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.2e-09 Score=106.35 Aligned_cols=90 Identities=16% Similarity=0.147 Sum_probs=65.1
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+.+|++..+.+++|.+.+ +++|+++|++||++||+||+|..-.+. +........+.+....|+++||||+|+++|
T Consensus 169 ~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~--~~~~~~~~~~~~~~~vi~~~SfSK~~~~~G 246 (401)
T TIGR01264 169 TAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFS--GATFEPLASLSSTVPILSCGGLAKRWLVPG 246 (401)
T ss_pred ceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccC--CcccccHHHcCCCCcEEEEccCcccCCCcc
Confidence 346677888999999876 888999999999999999999754443 221111112222223689999999999999
Q ss_pred ---ceeecCH------HHHHHHHh
Q psy2206 374 ---GYVAGSK------STIDYIRA 388 (430)
Q Consensus 374 ---G~v~gs~------~li~~l~~ 388 (430)
||+++++ ++++.++.
T Consensus 247 lRiG~iv~~~~~~~~~~~~~~~~~ 270 (401)
T TIGR01264 247 WRLGWIIIHDRRGILRDIRDGLVK 270 (401)
T ss_pred ceEEEEEecCcchhHHHHHHHHHH
Confidence 9999863 45555554
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.5e-09 Score=105.53 Aligned_cols=93 Identities=22% Similarity=0.211 Sum_probs=66.9
Q ss_pred EEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceec---CCCCCCccEEEeCccchhcc
Q psy2206 298 ILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF---GIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 298 ~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~---g~~~~~~dIv~~TlSKa~G~ 371 (430)
++|++..+.+++|.+.+ +.+|+++|++||++||+||+|..-..+.....+.... +....+..|+++||||+||+
T Consensus 157 k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~ 236 (374)
T PRK05839 157 DLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSA 236 (374)
T ss_pred cEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCC
Confidence 45566699999999987 7788888999999999999997532221111111110 01111356999999999999
Q ss_pred cc---ceeecCHHHHHHHHhcC
Q psy2206 372 MG---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 372 ~G---G~v~gs~~li~~l~~~~ 390 (430)
+| ||+++++++++.++...
T Consensus 237 ~GlRiG~ii~~~~~~~~~~~~~ 258 (374)
T PRK05839 237 PGLRSGFIAGDASILKKYKAYR 258 (374)
T ss_pred ccceeEEEecCHHHHHHHHHHH
Confidence 99 99999999999887643
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=7.5e-09 Score=108.22 Aligned_cols=84 Identities=19% Similarity=0.258 Sum_probs=62.5
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC-CCccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT-GRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~-GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
+++|++..+.+++|.+.+ +++|+++|++||++||+||+|...+++.. ...+.. ++ .....|+++||||.|+++
T Consensus 191 ~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~-~~--~~~~vi~~~S~SK~~~~p 267 (430)
T PLN00145 191 TVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGV-FG--EVAPVLTLGSISKRWVVP 267 (430)
T ss_pred ceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhh-hc--ccCcEEEEeccccccCCC
Confidence 456677777899999998 88999999999999999999986666431 111111 11 123479999999999999
Q ss_pred c---ceeec--CHHHH
Q psy2206 373 G---GYVAG--SKSTI 383 (430)
Q Consensus 373 G---G~v~g--s~~li 383 (430)
| ||+++ ++.++
T Consensus 268 G~RlG~iv~~~~~~~~ 283 (430)
T PLN00145 268 GWRLGWIATCDPNGIL 283 (430)
T ss_pred CeeEEEEEEecchhhh
Confidence 9 99986 44443
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=8e-09 Score=106.09 Aligned_cols=105 Identities=18% Similarity=0.228 Sum_probs=75.1
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc---
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG--- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G--- 373 (430)
+++|++.++.+++|.+.+.+++.++++.. ++||+||+|..... .+.. .... ...+..|+++||||+||++|
T Consensus 176 ~~~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~--~~~~-~~~~--~~~~~viv~~SfSK~~glaGlRi 249 (380)
T PLN03026 176 PKLLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFST--QESR-MKWV--KKYDNLIVLRTFSKRAGLAGLRV 249 (380)
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcC--Ccch-HHHH--HhCCCEEEEecchHhhcCccccc
Confidence 45777778999999999999999999865 89999999964322 1111 1111 11234799999999999999
Q ss_pred ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.+......+ + .+.+...++.++|
T Consensus 250 Gy~~~~~~~i~~l~~~~~~~--~--~~~~~q~aa~~aL 283 (380)
T PLN03026 250 GYGAFPLSIIEYLWRAKQPY--N--VSVAAEVAACAAL 283 (380)
T ss_pred eeeecCHHHHHHHHHhcCCC--C--CCHHHHHHHHHHh
Confidence 99999999999988755332 2 3334444455555
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.5e-09 Score=104.62 Aligned_cols=89 Identities=21% Similarity=0.165 Sum_probs=67.3
Q ss_pred EEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCC-ccceecCCCCCCccEEEeCccchhcccc-
Q psy2206 299 LIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR-GVTEYFGIDPREVDILMGTYTKSFGSMG- 373 (430)
Q Consensus 299 lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr-G~~e~~g~~~~~~dIv~~TlSKa~G~~G- 373 (430)
+|++.++.+++|.+.+ +.+|+++|++|+++||+||+|..-.++ +. ....... ..+..|+++||||++|++|
T Consensus 125 ~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~--~~~~~~~~~~--~~~~vi~~~SfSK~~~l~Gl 200 (332)
T PRK06425 125 LIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPN--RAEEDVLLNR--SYGNVIIGRSLTKILGIPSL 200 (332)
T ss_pred EEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccc--cchhHHHHhc--cCCCEEEEeecHHhcCCchh
Confidence 5555599999999988 677788889999999999999754332 21 1111111 1234799999999999999
Q ss_pred --ceeecCHHHHHHHHhcCC
Q psy2206 374 --GYVAGSKSTIDYIRANSH 391 (430)
Q Consensus 374 --G~v~gs~~li~~l~~~~~ 391 (430)
||+++++++++.+.....
T Consensus 201 RiGy~v~~~~li~~l~~~~~ 220 (332)
T PRK06425 201 RIGYIATDDYNMKISRKITE 220 (332)
T ss_pred hheeeecCHHHHHHHHHcCC
Confidence 999999999999887543
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.4e-09 Score=108.59 Aligned_cols=112 Identities=20% Similarity=0.267 Sum_probs=77.7
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-c
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-G 374 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G 374 (430)
++++|++..+.+++|.+.|+++|.++|++||+++++|++|++|... ..+....+|+++.|.+|.+|..| |
T Consensus 142 ~~~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~---------~~~~~~~~D~~~~s~~K~~gp~G~G 212 (402)
T TIGR02006 142 DTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIP---------INVNELKVDLMSISGHKIYGPKGIG 212 (402)
T ss_pred CCEEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcc---------cCccccCCCEEEEehhhhcCCCceE
Confidence 3568889999999999999999999999999999999999876532 11221346899999999888655 6
Q ss_pred eeecCHHHHHHHHhcCCc-----ccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 375 YVAGSKSTIDYIRANSHV-----RSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 375 ~v~gs~~li~~l~~~~~~-----~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
++..+++....+...... .....+.+...+++..++++.+++
T Consensus 213 ~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~~~~ 259 (402)
T TIGR02006 213 ALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKE 259 (402)
T ss_pred EEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHHHHH
Confidence 666555433222211100 112344566666666788888754
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.8e-09 Score=107.14 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=74.7
Q ss_pred eEEEEEcCccCCCCccc---CHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIV---RLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~---~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+. ++++|+++|++|+++||+||+|+.-++.. .-......+......|+++||||+|+++|
T Consensus 170 ~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~~~~~vi~~~SfSK~f~~pG 247 (409)
T PLN02656 170 TVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGS--NPFVPMGVFGSIVPVLTLGSLSKRWIVPG 247 (409)
T ss_pred ceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCC--CCcccHHHhcccCcEEEEcccchhccCcc
Confidence 44566667799999986 48999999999999999999998655542 11111111112234789999999999999
Q ss_pred ---ceeecC--------HHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 374 ---GYVAGS--------KSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 374 ---G~v~gs--------~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
||++++ +++++.+...... +. +.+++..+++.++|+
T Consensus 248 lRiG~~i~~~~~~~~~~~~~~~~~~~~~~~--~~-~~s~~~q~a~~~~l~ 294 (409)
T PLN02656 248 WRLGWFVTTDPSGSFRDPKIVERIKKYFDI--LG-GPATFIQAAVPTILE 294 (409)
T ss_pred eeEEEEEEeCcccccccHHHHHHHHHHHhh--hc-CCCHHHHHHHHHHHh
Confidence 999983 6888888764322 22 234444444445553
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.9e-09 Score=106.67 Aligned_cols=92 Identities=20% Similarity=0.264 Sum_probs=71.4
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhc--CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKY--KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y--~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+..+|++.++.+++|...+.++|.++++.- +.+|||||||.- |.+ ........ . ..-.|++.||||+||++|
T Consensus 145 ~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~e--F~~--~~~~~l~~-~-~~nlivlRTfSKa~gLAG 218 (356)
T COG0079 145 KTKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYIE--FSP--ESSLELLK-Y-PPNLIVLRTFSKAFGLAG 218 (356)
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhh--cCC--chhhhhcc-C-CCCEEEEEecHHhhhcch
Confidence 356899999999999999988888888754 789999999853 222 11112111 1 122589999999999999
Q ss_pred ---ceeecCHHHHHHHHhcCCcc
Q psy2206 374 ---GYVAGSKSTIDYIRANSHVR 393 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~~~~ 393 (430)
||+++++++++.++....+|
T Consensus 219 lRlGy~ia~~~~i~~l~~vr~p~ 241 (356)
T COG0079 219 LRVGYAIANPELIAALNKVRPPF 241 (356)
T ss_pred hceeeccCCHHHHHHHHHhcCCC
Confidence 99999999999999977665
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.4e-09 Score=106.01 Aligned_cols=138 Identities=20% Similarity=0.293 Sum_probs=100.5
Q ss_pred HHHHHHHHHhCCCCC--CCCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEE
Q psy2206 254 ERSKESVKQSGCALC--SPSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYV 331 (430)
Q Consensus 254 ~a~~~ai~~yG~g~~--~sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~Liv 331 (430)
.-+.+.+.+||+.+. .+...+.+++.+.+ .++.+|.+|++-||...+.|+++|+++|+++|+++||
T Consensus 117 ~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~------------~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvV 184 (396)
T COG0626 117 RLFEKILQKFGVEVTFVDPGDDEALEAAIKE------------PNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVV 184 (396)
T ss_pred HHHHHHHHhcCeEEEEECCCChHHHHHHhcc------------cCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEE
Confidence 445556667887554 22223444444432 1578999999999999999999999999999999999
Q ss_pred eccccccccCCCCCccceecCCCCCCccEEEeCccchhc----cccceeecCH-HHHHHHHhcCCcccccCCCcHHHHHH
Q psy2206 332 DEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG----SMGGYVAGSK-STIDYIRANSHVRSYATSMPPPVAMQ 406 (430)
Q Consensus 332 DEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G----~~GG~v~gs~-~li~~l~~~~~~~~~s~s~~P~~~aa 406 (430)
|++.+.+++- .++. ..+||++.|.+|.++ ..||+++++. ++.+.+....+. .+++.++|..++.
T Consensus 185 DNTfatP~~q---------~PL~-~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~-~~G~~l~p~dA~l 253 (396)
T COG0626 185 DNTFATPVLQ---------RPLE-LGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRA-NTGAVLSPFDAWL 253 (396)
T ss_pred ECCccccccc---------Chhh-cCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHh-hcCCCCCHHHHHH
Confidence 9999887652 2232 357999999999997 4668887654 555555332222 2577899999999
Q ss_pred HHHHHHHH
Q psy2206 407 ILTSMRII 414 (430)
Q Consensus 407 alaaL~~l 414 (430)
.+..|+.+
T Consensus 254 ~lRGlkTL 261 (396)
T COG0626 254 LLRGLRTL 261 (396)
T ss_pred HHhccchH
Confidence 99988776
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-08 Score=105.17 Aligned_cols=110 Identities=16% Similarity=0.162 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCC--Ccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTG--RGV 347 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~G--rG~ 347 (430)
+++|++.+++.... ..++++|++..+.+++|.+.+ +.+|+++|++||++||.||+|+..+++... ..+
T Consensus 194 ~~~le~~i~~~~~~-------~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~~~~s~ 266 (407)
T PLN02368 194 VNNLRQSVAQARSK-------GITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDERPFISA 266 (407)
T ss_pred HHHHHHHHHHHhhc-------CCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcccH
Confidence 57777777642100 013566677777999999987 778888899999999999999877664321 111
Q ss_pred ceec-CCC----CCCccEEEeCccchh-cccc---ceee---cCHHHHHHHHhc
Q psy2206 348 TEYF-GID----PREVDILMGTYTKSF-GSMG---GYVA---GSKSTIDYIRAN 389 (430)
Q Consensus 348 ~e~~-g~~----~~~~dIv~~TlSKa~-G~~G---G~v~---gs~~li~~l~~~ 389 (430)
.+.. .+. .....|+++||||+| |++| ||++ +++++++.+...
T Consensus 267 ~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~ 320 (407)
T PLN02368 267 KKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKV 320 (407)
T ss_pred HHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHH
Confidence 1110 111 122579999999998 8999 9998 588999988875
|
|
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.7e-09 Score=109.44 Aligned_cols=106 Identities=16% Similarity=0.126 Sum_probs=79.5
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|++|++.++.|.+.++++|+++|++||++|++||+|+.+++- .++. ..+||++.|++|.++.
T Consensus 150 ~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~~---------~~l~-~GaDi~v~S~tK~~~g~~~~ 219 (394)
T PRK07050 150 NTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAF---------KPFE-HGVDISVQALTKYQSGGSDV 219 (394)
T ss_pred CCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCccccccc---------CHHH-cCCeEEEEECCceecCCCCe
Confidence 4678999999999999999999999999999999999999887542 1122 2458999999999853
Q ss_pred ccce-eecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 372 MGGY-VAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 372 ~GG~-v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
+||+ +.+++++++.++.... . .+..++|..+..++..|+.
T Consensus 220 ~gG~v~~~~~~~~~~~~~~~~-~-~G~~~~~~~a~l~lr~l~t 260 (394)
T PRK07050 220 LMGATITADAELHAKLKLARM-R-LGIGVSADDCSLVLRGLPS 260 (394)
T ss_pred eEEEEEECCHHHHHHHHHHHH-h-cCCCCCHHHHHHHHcCCCc
Confidence 4565 4457888887765332 2 3556788877766554433
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.7e-09 Score=110.69 Aligned_cols=79 Identities=18% Similarity=0.170 Sum_probs=59.7
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHh--cCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNK--YKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~--y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~ 371 (430)
+++|++.++.+|+|.+.+ +++|+++|++ ++++||+||+|+.-+. ....+... .+ +..|++.||||+||+
T Consensus 242 tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~~~s~~~~---~~-~~~I~v~SfSK~f~m 315 (527)
T PRK09275 242 IKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD--DFRSLFAV---LP-YNTILVYSFSKYFGA 315 (527)
T ss_pred CCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc--cccCHHHh---CC-CCEEEEeehhhhccC
Confidence 446666688999999998 8888888954 5999999999986332 11222221 12 457999999999999
Q ss_pred cc---ceeecCHH
Q psy2206 372 MG---GYVAGSKS 381 (430)
Q Consensus 372 ~G---G~v~gs~~ 381 (430)
+| ||++++++
T Consensus 316 tG~RlG~i~~~~~ 328 (527)
T PRK09275 316 TGWRLGVIALHED 328 (527)
T ss_pred cHhHHhhhhcCch
Confidence 99 99999886
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.2e-08 Score=104.73 Aligned_cols=89 Identities=13% Similarity=0.191 Sum_probs=66.9
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+.+ +++|+++|++|++++|+||+|..-.+....... .... +..|+++||||.||++|
T Consensus 164 ~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~---~~~~--~~vi~~~S~SK~~~~~G 238 (388)
T PRK07337 164 TRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSA---LSLG--DDVITINSFSKYFNMTG 238 (388)
T ss_pred ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcCh---hhcc--CCEEEEEechhhcCCch
Confidence 456777788999999886 788889999999999999999743332211111 1121 23577899999999988
Q ss_pred ---ceeecCHHHHHHHHhcC
Q psy2206 374 ---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~ 390 (430)
||+++++++++.+....
T Consensus 239 ~RiG~~~~~~~l~~~l~~~~ 258 (388)
T PRK07337 239 WRLGWLVVPEALVGTFEKLA 258 (388)
T ss_pred hheeeeecCHHHHHHHHHHH
Confidence 99999999998887644
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.1e-09 Score=107.99 Aligned_cols=108 Identities=18% Similarity=0.238 Sum_probs=75.6
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc--
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-- 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-- 373 (430)
++++|++|++.|++|.+.|+++|+++|++||+++|+|++|+.+.. +.....++||+++|+||.++..|
T Consensus 131 ~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~~----------~~~~~~gaDivv~S~sK~~~g~g~~ 200 (397)
T PRK05939 131 NTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWL----------FRPKDVGASLVINSLSKYIAGHGNA 200 (397)
T ss_pred CCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcccccc----------cCccccCCEEEEecCeecccCCCCe
Confidence 467899999999999999999999999999999999999876531 11111256999999999998655
Q ss_pred --ceeecCHH--------H-------------HHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 374 --GYVAGSKS--------T-------------IDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 374 --G~v~gs~~--------l-------------i~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
|+++.+.. + +..++... ...+.+.++|..++.++..++.+
T Consensus 201 igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~~~p~~a~l~~rgl~tl 263 (397)
T PRK05939 201 LGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKG-LRDMGATLSSEAAHRIAIGAETL 263 (397)
T ss_pred EEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHH-HHhcCCCCCHHHHHHHHcCcCcH
Confidence 44442221 1 11122111 01246678899888887776655
|
|
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=98.84 E-value=1e-08 Score=104.86 Aligned_cols=81 Identities=21% Similarity=0.229 Sum_probs=60.7
Q ss_pred ceEEEEEcCccCCCCcccCH-HHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc---
Q psy2206 296 RKILIVVEGIFSMDGSIVRL-PEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS--- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L-~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~--- 371 (430)
++++|+++.+ +++|.+.|+ ++|+++|++||++||+|++|+.+. +. +-... .++|++++|++|.++.
T Consensus 159 ~t~~viv~~~-~~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~-~~---~~~~~-----~~~d~~~~s~~K~~~p~g~ 228 (398)
T cd00613 159 EVAALMVQYP-NTLGVFEDLIKEIADIAHSAGALVYVDGDNLNLT-GL---KPPGE-----YGADIVVGNLQKTGVPHGG 228 (398)
T ss_pred CeEEEEEECC-CCCceecchHHHHHHHHHhcCCEEEEEecccccc-CC---CChHH-----cCCCEEEeeccccCCCCCC
Confidence 3567777777 478999885 999999999999999999997543 11 11111 2468999999999821
Q ss_pred ---ccceeecCHHHHHHH
Q psy2206 372 ---MGGYVAGSKSTIDYI 386 (430)
Q Consensus 372 ---~GG~v~gs~~li~~l 386 (430)
.+|+++.++++++.+
T Consensus 229 Ggp~~g~l~~~~~~~~~~ 246 (398)
T cd00613 229 GGPGAGFFAVKKELVRFL 246 (398)
T ss_pred CCCceeEEEEhhhhHhhC
Confidence 247888888888764
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-08 Score=103.88 Aligned_cols=91 Identities=15% Similarity=0.185 Sum_probs=65.6
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCC-CccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTG-RGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~G-rG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
+++|++..+.+++|.+.+ +++|+++|++|++++|+||+|+...+...- ..+....+. .+..|+++||||.||++
T Consensus 163 ~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~--~~~~i~~~S~SK~~~~~ 240 (397)
T PRK07568 163 TKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGL--EDRVIIIDSVSKRYSAC 240 (397)
T ss_pred ceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCC--cCCEEEEecchhhccCC
Confidence 446677778899999886 788999999999999999999754442211 111221111 23468999999999988
Q ss_pred c---ceeec-CHHHHHHHHhc
Q psy2206 373 G---GYVAG-SKSTIDYIRAN 389 (430)
Q Consensus 373 G---G~v~g-s~~li~~l~~~ 389 (430)
| ||+++ ++++++.+...
T Consensus 241 G~R~G~~~~~~~~~~~~~~~~ 261 (397)
T PRK07568 241 GARIGCLISKNKELIAAAMKL 261 (397)
T ss_pred CcceEEEecCCHHHHHHHHHH
Confidence 7 99887 47888876553
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-08 Score=103.26 Aligned_cols=137 Identities=20% Similarity=0.235 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHH--HHhcCcEEEEeccccccccCCCCCcccee
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRL--KNKYKAYLYVDEAHSIGALGPTGRGVTEY 350 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~L--a~~y~~~LivDEAh~~G~lG~~GrG~~e~ 350 (430)
+++|++.|++. + ..++++|++..+.+.+|.+.|+++|.++ |++||+++++|++|+.|.+ .
T Consensus 123 ~~~l~~~l~~~-------~--~~~~k~v~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~---------~ 184 (401)
T PLN02409 123 LDILKSKLRQD-------T--NHKIKAVCVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGAL---------D 184 (401)
T ss_pred HHHHHHHHhhC-------c--CCCccEEEEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCCc---------c
Confidence 67888887641 0 0135677777888889999999999999 9999999999999986532 1
Q ss_pred cCCCCCCccEEEeCccchhcc-cc-ceeecCHHHHHHHHhcCC-cccc---------------cCCCcHHHHHHHHHHHH
Q psy2206 351 FGIDPREVDILMGTYTKSFGS-MG-GYVAGSKSTIDYIRANSH-VRSY---------------ATSMPPPVAMQILTSMR 412 (430)
Q Consensus 351 ~g~~~~~~dIv~~TlSKa~G~-~G-G~v~gs~~li~~l~~~~~-~~~~---------------s~s~~P~~~aaalaaL~ 412 (430)
..+...++|+++.|.+|++++ +| |++..++++++.+..... ++.+ ..+++.....+..++++
T Consensus 185 id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~ 264 (401)
T PLN02409 185 FRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALD 264 (401)
T ss_pred ccccccCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHH
Confidence 122223568999999999965 55 899999999888764221 1100 11344445666778899
Q ss_pred HHHccCCchHHHhhhh
Q psy2206 413 IIMGLENGDEGNVRHS 428 (430)
Q Consensus 413 ~l~~~~~~~~~~~r~~ 428 (430)
.+.++ +.+..+++.+
T Consensus 265 ~~~~~-G~e~i~~~~~ 279 (401)
T PLN02409 265 LIFEE-GLENVIARHA 279 (401)
T ss_pred HHHHh-hHHHHHHHHH
Confidence 88643 4455555443
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.8e-08 Score=104.91 Aligned_cols=119 Identities=15% Similarity=0.246 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHH---HHHHHHHhc-CcEEEEeccccccccCCCCCccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLP---EIVRLKNKY-KAYLYVDEAHSIGALGPTGRGVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~---~I~~La~~y-~~~LivDEAh~~G~lG~~GrG~~ 348 (430)
+++|+++++.. .+.++++.++.+++|.+.+.+ +|+++|++| +++||+||+|+.-.+.+ ....
T Consensus 201 ~~~l~~~~~~~------------~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~-~~~~- 266 (431)
T PRK15481 201 PEKLERALAQG------------ARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSP-YHSV- 266 (431)
T ss_pred HHHHHHHHhcC------------CCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCC-CCCC-
Confidence 56777766431 234555568999999999865 999999999 99999999997543321 1111
Q ss_pred eecCCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 349 EYFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 349 e~~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
.... .+..|+++||||+|| +| ||+++++++++.+....... +...+.+...++.++|
T Consensus 267 --~~~~-~~~vi~~~SfSK~~~-~GlRiG~~i~~~~~~~~~~~~~~~~--~~~~s~~~q~a~~~~l 326 (431)
T PRK15481 267 --IPQT-TQRWALIRSVSKALG-PDLRLAFVASDSATSARLRLRLNSG--TQWVSHLLQDLVYACL 326 (431)
T ss_pred --CcCC-CCCEEEEeeeccccC-CCceeEEEeCCHHHHHHHHHHHhcc--ccCCCHHHHHHHHHHH
Confidence 1111 235799999999999 88 99999999999887543222 1224455445455554
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.2e-09 Score=107.08 Aligned_cols=136 Identities=21% Similarity=0.265 Sum_probs=92.6
Q ss_pred HHHHHHHHHhCCCCCC--CCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcC-cEEE
Q psy2206 254 ERSKESVKQSGCALCS--PSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYK-AYLY 330 (430)
Q Consensus 254 ~a~~~ai~~yG~g~~~--sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~-~~Li 330 (430)
.-..+.+.++|+...- ...+++|+++|++ ++.+|++|++-|+...+.||++|+++|+++| ++++
T Consensus 109 ~~~~~~l~~~gv~v~~~d~~d~~~l~~~l~~-------------~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~v 175 (386)
T PF01053_consen 109 RLLEELLPRFGVEVTFVDPTDLEALEAALRP-------------NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVV 175 (386)
T ss_dssp HHHHHCHHHTTSEEEEESTTSHHHHHHHHCT-------------TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEE
T ss_pred hhhhhhhcccCcEEEEeCchhHHHHHhhccc-------------cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEE
Confidence 3334455566664322 2226778777764 5789999999999999999999999999998 9999
Q ss_pred EeccccccccCCCCCccceecCCCCCCccEEEeCccchhc----cccceeecC--HHHHHHHHhcCCcccccCCCcHHHH
Q psy2206 331 VDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG----SMGGYVAGS--KSTIDYIRANSHVRSYATSMPPPVA 404 (430)
Q Consensus 331 vDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G----~~GG~v~gs--~~li~~l~~~~~~~~~s~s~~P~~~ 404 (430)
||.+.+.+++- . .+. ..+||++.|++|.++ .+||+++.+ +++++.++... ..++..++|..+
T Consensus 176 VDnT~atp~~~-------~--pL~-~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~--~~~G~~~~p~da 243 (386)
T PF01053_consen 176 VDNTFATPYNQ-------N--PLE-LGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFR--RLLGATLSPFDA 243 (386)
T ss_dssp EECTTTHTTTC----------GGG-GT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHH--HHHT-B--HHHH
T ss_pred eeccccceeee-------c--cCc-CCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchh--hhcCccchHHHH
Confidence 99998765421 1 122 246999999999996 356888755 47887776543 245777899999
Q ss_pred HHHHHHHHHH
Q psy2206 405 MQILTSMRII 414 (430)
Q Consensus 405 aaalaaL~~l 414 (430)
+..+..|+.+
T Consensus 244 ~ll~rgl~Tl 253 (386)
T PF01053_consen 244 WLLLRGLRTL 253 (386)
T ss_dssp HHHHHHHTTH
T ss_pred HHHhcCCCcH
Confidence 9888877665
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.3e-08 Score=108.81 Aligned_cols=83 Identities=18% Similarity=0.249 Sum_probs=60.8
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC-CCccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT-GRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~-GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
+++|++..+.+++|.+.+ +.+|+++|++||++||+||+|..-++... ...+... .++...|+++||||+|+++
T Consensus 282 ~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~---~~~~~vi~~~S~SK~~~~~ 358 (517)
T PRK13355 282 TKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASL---APDLFCVTFSGLSKSHMIA 358 (517)
T ss_pred ceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHh---CCCCeEEEEecchhhccCc
Confidence 456666678999999998 89999999999999999999986555321 1122222 2223356679999999999
Q ss_pred c---ceee--cCHHH
Q psy2206 373 G---GYVA--GSKST 382 (430)
Q Consensus 373 G---G~v~--gs~~l 382 (430)
| ||++ +++++
T Consensus 359 G~RiG~~i~~~~~~~ 373 (517)
T PRK13355 359 GYRIGWMILSGNKRI 373 (517)
T ss_pred ccceEEEEeeCchhh
Confidence 9 9988 44543
|
|
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-08 Score=104.50 Aligned_cols=134 Identities=12% Similarity=0.098 Sum_probs=91.4
Q ss_pred HHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEE
Q psy2206 254 ERSKESVKQSGCALCSPS--APSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYV 331 (430)
Q Consensus 254 ~a~~~ai~~yG~g~~~sr--~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~Liv 331 (430)
......+.++|+...-.. .+++|++.+++ ++++|++|++.+++|.+.|+++|.++|++||++||+
T Consensus 103 ~~~~~~~~~~gi~v~~vd~~d~e~l~~ai~~-------------~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~viv 169 (380)
T PRK06176 103 RLFDKVLVKNGLSCTIIDTSDLSQIKKAIKP-------------NTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIV 169 (380)
T ss_pred HHHHHHHHhcCeEEEEcCCCCHHHHHHhcCc-------------CceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEE
Confidence 444455666776432211 25666655432 467899999999999999999999999999999999
Q ss_pred eccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----ccceeec-CHHHHHHHHhcCCcccccCCCcHHHHHH
Q psy2206 332 DEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS----MGGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQ 406 (430)
Q Consensus 332 DEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~----~GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aa 406 (430)
|++|+.+.++. - +. ..+||++.|++|.++. .||++++ ++++.+.++.... ..+..++|..++.
T Consensus 170 D~t~a~~~~~~---p------~~-~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~--~~G~~~~~~~~~l 237 (380)
T PRK06176 170 DNTFATPYYQN---P------LL-LGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQN--AIGGVLGPQDSWL 237 (380)
T ss_pred ECCccccccCC---c------cc-cCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHH--HhcCCCCHHHHHH
Confidence 99998765432 1 11 2468999999999964 4687776 4666666654221 1244567776666
Q ss_pred HHHHHH
Q psy2206 407 ILTSMR 412 (430)
Q Consensus 407 alaaL~ 412 (430)
++..++
T Consensus 238 ~~~gl~ 243 (380)
T PRK06176 238 LQRGIK 243 (380)
T ss_pred HHhccC
Confidence 655553
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-08 Score=105.46 Aligned_cols=89 Identities=17% Similarity=0.182 Sum_probs=65.8
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+.+ +++|+++|++||+++|+||+|+...+......+.. +......|+++||||+|+++|
T Consensus 167 ~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~---~~~~~~vi~~~SfSK~~~~~G 243 (398)
T PRK08363 167 TKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGS---LTKDVPVIVMNGLSKVYFATG 243 (398)
T ss_pred eEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHH---cCcCCcEEEEecchhccCCcc
Confidence 456666788999999887 89999999999999999999986555321112111 112234688999999999999
Q ss_pred ---ceeec--CHHHHHHHHh
Q psy2206 374 ---GYVAG--SKSTIDYIRA 388 (430)
Q Consensus 374 ---G~v~g--s~~li~~l~~ 388 (430)
||+++ ++++++.++.
T Consensus 244 lRiG~~~~~~~~~~~~~l~~ 263 (398)
T PRK08363 244 WRLGYIYFVDPEGKLAEVRE 263 (398)
T ss_pred ceEEEEEEeCcHHHHHHHHH
Confidence 99986 7777766554
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.3e-09 Score=109.74 Aligned_cols=101 Identities=22% Similarity=0.291 Sum_probs=70.9
Q ss_pred HHHHHHHhCCCCCC--CCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEec
Q psy2206 256 SKESVKQSGCALCS--PSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDE 333 (430)
Q Consensus 256 ~~~ai~~yG~g~~~--sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDE 333 (430)
..+.+..+|....- ...+++|+++|.+ ++++|++|++.|++|.+.|+++|+++|++||+++|+||
T Consensus 113 ~~~~~~~~G~~v~~v~~~d~~~l~~~l~~-------------~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~ 179 (418)
T TIGR01326 113 FKHTLKRLGIEVRFVDPDDPEEFEKAIDE-------------NTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDN 179 (418)
T ss_pred HHHHHHHcCcEEEEECCCCHHHHHHhcCc-------------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEEC
Confidence 34445566653221 1125566665532 35688899999999999999999999999999999999
Q ss_pred cccccccCCCCCccceecCCCCCCccEEEeCccchhcccc----ceeecC
Q psy2206 334 AHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG----GYVAGS 379 (430)
Q Consensus 334 Ah~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G----G~v~gs 379 (430)
+|+.+.+.. . +. ..+||++.|++|.+|..| |.++.+
T Consensus 180 t~~~~~~~~-------~--l~-~g~Divv~S~sK~l~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 180 TFATPYLCR-------P--ID-HGADIVVHSATKYIGGHGTAIGGVIVDG 219 (418)
T ss_pred CCchhhcCC-------c--hh-cCCeEEEECccccccCCccceEEEEEec
Confidence 997653211 1 11 246999999999998754 545544
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.6e-09 Score=104.85 Aligned_cols=121 Identities=19% Similarity=0.235 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|+++|++ ++.+|++..+.+++|.+.|+++|.++|++||++++||.+|+.|.+. +.
T Consensus 128 ~~~l~~~i~~-------------~t~lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~---------~~ 185 (364)
T PLN02651 128 LDELAAAIRP-------------DTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIP---------VD 185 (364)
T ss_pred HHHHHHhcCC-------------CcEEEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCcc---------cC
Confidence 6777777643 3668899999999999999999999999999999999999876431 22
Q ss_pred CCCCCccEEEeCccchhcccc-ceeecCHHHHHHHHhcC------CcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 353 IDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIRANS------HVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~~~~------~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
+...++|+++.|..|.+|..| |++..+++..+.+.... ..+ ...+.+...+.+..++|+.+.+
T Consensus 186 ~~~~~~D~~~~s~hK~~gp~G~g~l~v~~~~~~~l~p~~~g~~~~~~~-~~GT~~~~~~~~l~~al~~~~~ 255 (364)
T PLN02651 186 VDDLGVDLMSISGHKIYGPKGVGALYVRRRPRVRLEPLMSGGGQERGR-RSGTENTPLVVGLGAACELAMK 255 (364)
T ss_pred cccCCCCEEEechhhhCCCCceEEEEEcCCCCCCCCccccCCCccCCc-cCCCccHHHHHHHHHHHHHHHH
Confidence 222357999999999756555 77777765554333211 111 2334566667777889998865
|
|
| >KOG1403|consensus | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.4e-09 Score=102.00 Aligned_cols=132 Identities=20% Similarity=0.216 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-
Q psy2206 274 SSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT- 348 (430)
Q Consensus 274 ~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~- 348 (430)
+++++++++....|+ ..+.+|.|+..|-.|.+.| +.++.+..+.+|.+.|.||++ +| ||+-|+-.+
T Consensus 194 d~vk~I~~d~~~~g~-------gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQ-vG-FGRvG~hyWa 264 (452)
T KOG1403|consen 194 DPVKEICQDQLAKGQ-------GVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQ-VG-FGRVGSHYWA 264 (452)
T ss_pred hHHHHHHHHHHhcCC-------cHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhh-hc-ccccchhhhh
Confidence 567777766433222 3556889999999999887 888888899999999999998 56 677776443
Q ss_pred -eecCCCCCCccEEEeCccchhc--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCC
Q psy2206 349 -EYFGIDPREVDILMGTYTKSFG--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLEN 419 (430)
Q Consensus 349 -e~~g~~~~~~dIv~~TlSKa~G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~ 419 (430)
+.++.-| ||+ |++|.+| -+-+.|+..+++.+.+......|.-+...+|+.||+.++.+++++.|+-
T Consensus 265 fq~y~fiP---DIV--tmgKpmGNGhPVa~VattkeIA~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~E~L 333 (452)
T KOG1403|consen 265 FQTYNFIP---DIV--TMGKPMGNGHPVAAVATTKEIAQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCEDENL 333 (452)
T ss_pred hhhhcccc---chh--eecccCCCCCeeeEEeccHHHHHHhccccceehhccCCCchhHHHHHHHHHHHhhhhH
Confidence 5566655 788 9999996 4558899999999999887777777888999999999999999987744
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.5e-09 Score=105.16 Aligned_cols=107 Identities=11% Similarity=0.162 Sum_probs=70.7
Q ss_pred EEEEEcCccCCCCcccCHHHHHHH---HHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-
Q psy2206 298 ILIVVEGIFSMDGSIVRLPEIVRL---KNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG- 373 (430)
Q Consensus 298 ~lIi~E~v~sm~G~i~~L~~I~~L---a~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G- 373 (430)
++|++..+.+++|.+.+.+++.+| |++++ ++|+||+|...+........... +...+..|+++||||+||++|
T Consensus 153 ~~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~--~~~~~~vi~~~SfSK~~~l~Gl 229 (366)
T PRK01533 153 KIVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPL--LEKHKNILVLRTFSKAYGLASF 229 (366)
T ss_pred cEEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHH--hccCCCEEEEeCchHHhcChHH
Confidence 456666889999999996555555 45555 67889999643222110111111 112245799999999999999
Q ss_pred --ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 --GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 --G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.++..... ...+++..+++.++|
T Consensus 230 RiG~~i~~~~~~~~l~~~~~~----~~~~~~~q~aa~~~l 265 (366)
T PRK01533 230 RVGYAVGHEELIEKLNVVRLP----FNVSSLAQKAATIAF 265 (366)
T ss_pred HHhHHhCCHHHHHHHHHhcCC----CCcCHHHHHHHHHHh
Confidence 9999999999998875422 235555555566665
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-08 Score=103.71 Aligned_cols=91 Identities=16% Similarity=0.175 Sum_probs=64.9
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+.+ +.+|+++|++||++||+||+|..-+++. .-......+......|+++||||+||++|
T Consensus 178 ~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~~~~~~i~~~SfSK~~~~pG 255 (412)
T PTZ00433 178 TKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNG--ATFTSVADFDTTVPRVILGGTAKNLVVPG 255 (412)
T ss_pred ceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCC--CCccchhhccCCCceEEEccchhhcCCCC
Confidence 456677888999998776 7888999999999999999997554532 11111111211223588999999999999
Q ss_pred ---ceeec------CHHHHHHHHhc
Q psy2206 374 ---GYVAG------SKSTIDYIRAN 389 (430)
Q Consensus 374 ---G~v~g------s~~li~~l~~~ 389 (430)
||+++ .+++++.++..
T Consensus 256 lRlG~~i~~~p~~~~~~~~~~~~~~ 280 (412)
T PTZ00433 256 WRLGWLLLVDPHGNGGDFLDGMKRL 280 (412)
T ss_pred eeEEEEEEeCCcccHHHHHHHHHHH
Confidence 99986 25677777664
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.5e-09 Score=104.57 Aligned_cols=111 Identities=19% Similarity=0.220 Sum_probs=68.4
Q ss_pred ceEEEEEcCccCCCCcccCHHH---HHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPE---IVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~---I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
++++|+++++. +|.+.|+++ |+++|++|+++|++||||..+..+..+..... +. ...|.++.||||++|++
T Consensus 129 ~~~lv~l~np~--~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~---~~-~~~~~~~~s~SK~~~~~ 202 (333)
T PRK10534 129 RTRLLSLENTH--NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKE---IT-QYCDSFTICLSKGLGTP 202 (333)
T ss_pred cceEEEEecCC--CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHH---HH-hcCCEEEEEeEcCCCCc
Confidence 35577777765 599988655 56788999999999999864321111211111 11 12245556999999974
Q ss_pred -cceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 373 -GGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 373 -GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
|||+++++++++.++.....+....+.+.+++++++++|+
T Consensus 203 ~G~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~ 243 (333)
T PRK10534 203 VGSLLVGNRDYIKRARRWRKMTGGGMRQAGILAAAGLYALK 243 (333)
T ss_pred ccceEEcCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 5689999999998886443221111223344555556664
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.7e-08 Score=105.68 Aligned_cols=73 Identities=26% Similarity=0.382 Sum_probs=59.3
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|++|++.|++|.+.|+++|+++|++||+++|+||+|+.+.... .+. ..+|+++.|++|.+|.
T Consensus 148 ~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~~~---------pl~-~gaDivv~S~tK~lgg~~~~ 217 (427)
T PRK05994 148 RTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLIR---------PIE-HGADIVVHSLTKFLGGHGNS 217 (427)
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccccccCC---------ccc-cCCcEEEEcCccccCCCCCc
Confidence 46789999999999999999999999999999999999998664321 121 3569999999999975
Q ss_pred ccceeec
Q psy2206 372 MGGYVAG 378 (430)
Q Consensus 372 ~GG~v~g 378 (430)
.||+++.
T Consensus 218 ~gG~v~~ 224 (427)
T PRK05994 218 MGGIIVD 224 (427)
T ss_pred EEEEEEe
Confidence 4566653
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=3e-08 Score=101.19 Aligned_cols=91 Identities=20% Similarity=0.144 Sum_probs=67.6
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHh--cCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNK--YKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~--y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G- 373 (430)
+.+|++..+.+++|.+.+.+++.++++. +++++|+||+|....+.+ ........ .+..|+++||||+||++|
T Consensus 153 ~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~---~~~~~~~~--~~~vi~~~SfSK~~gl~Gl 227 (364)
T PRK04781 153 AKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVP---SAVGLLAR--YDNLAVLRTLSKAHALAAA 227 (364)
T ss_pred CeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCc---chHHHHhh--CCCEEEEecChhhcccccc
Confidence 4566667899999999998888777764 478999999997433221 11111121 234689999999999999
Q ss_pred --ceeecCHHHHHHHHhcCCc
Q psy2206 374 --GYVAGSKSTIDYIRANSHV 392 (430)
Q Consensus 374 --G~v~gs~~li~~l~~~~~~ 392 (430)
||+++++++++.++.....
T Consensus 228 RvGy~v~~~~l~~~l~~~~~~ 248 (364)
T PRK04781 228 RIGSLIANAELIAVLRRCQAP 248 (364)
T ss_pred eeeeeeCCHHHHHHHHhccCC
Confidence 9999999999999876543
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.7e-08 Score=98.84 Aligned_cols=125 Identities=14% Similarity=0.148 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCcccee
Q psy2206 274 SSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEY 350 (430)
Q Consensus 274 ~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~ 350 (430)
++||+.+.+. +.+++|..++.+++|.+-. |.+|.+||++||++||.||+|+-.+++..-+-....
T Consensus 148 ~~LE~~~~~~------------~vkl~iLCnPHNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ 215 (388)
T COG1168 148 DALEKAFVDE------------RVKLFILCNPHNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFAS 215 (388)
T ss_pred HHHHHHHhcC------------CccEEEEeCCCCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhh
Confidence 6777777652 4578999999999998864 999999999999999999999988876422111111
Q ss_pred cCCCCCCccEEEeCccchhcccc---ce-eecCHHHH-HHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 351 FGIDPREVDILMGTYTKSFGSMG---GY-VAGSKSTI-DYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 351 ~g~~~~~~dIv~~TlSKa~G~~G---G~-v~gs~~li-~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
......+..|.+.|-||+|..+| ++ |+.++++. .+++.... .....++.+..-|..+|.+
T Consensus 216 ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~--~~~~~~n~lg~~A~~aAY~ 280 (388)
T COG1168 216 LSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKR--NGLHGPSALGIIATEAAYN 280 (388)
T ss_pred cChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHH--hcCCCCchHHHHHHHHHHH
Confidence 11111355688889999998777 44 56667763 33333221 1233455555555555543
|
|
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-08 Score=105.59 Aligned_cols=106 Identities=13% Similarity=0.163 Sum_probs=79.8
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|++|++.+++|.+.|+++|.++|+++|+++|+||+|+.+.... .+. ..+||++.|++|.++.
T Consensus 138 ~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~---------~~~-~g~Divv~S~tK~~~G~~~~ 207 (390)
T PRK08064 138 NTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQK---------PLD-LGADVVLHSATKFLAGHSDV 207 (390)
T ss_pred CceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccC---------chh-hCCcEEEeecceeccCCccc
Confidence 46799999999999999999999999999999999999987654211 111 2458999999999963
Q ss_pred ccceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 372 MGGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 372 ~GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
.+|+++. ++++++.++..... ++..++|..++.++..++.
T Consensus 208 laG~~v~~~~~~~~~l~~~~~~--~g~~~~~~~a~l~~~gl~t 248 (390)
T PRK08064 208 LAGLAVVKDEELAQKLYFLQNS--FGAVLGVQDCWLVLRGLKT 248 (390)
T ss_pred eeEEEEeCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHcccCc
Confidence 3576554 57888887764432 4666778777766665543
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.9e-08 Score=102.17 Aligned_cols=89 Identities=16% Similarity=0.138 Sum_probs=67.3
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+.+ +.+|+++|++|+++||+||+|...++. +........ ..+.+|+++||||+||++|
T Consensus 143 ~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~--~~~~~~~~~--~~~~~i~~~S~SK~~~~~G 218 (356)
T PRK08056 143 LDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPD--ETGFIPQLA--DNPHLWVLRSLTKFYAIPG 218 (356)
T ss_pred CCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCc--chHHHHHhc--cCCCEEEEEechhhccCcc
Confidence 457778899999999998 888999999999999999998643332 222111111 1235799999999999998
Q ss_pred ---ceeec-CHHHHHHHHhc
Q psy2206 374 ---GYVAG-SKSTIDYIRAN 389 (430)
Q Consensus 374 ---G~v~g-s~~li~~l~~~ 389 (430)
||+++ ++++++.++..
T Consensus 219 ~RiG~~v~~~~~~~~~l~~~ 238 (356)
T PRK08056 219 LRLGYLVNSDDAAVARMRRQ 238 (356)
T ss_pred hhheeeecCCHHHHHHHHHh
Confidence 99987 56788887763
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-08 Score=105.07 Aligned_cols=102 Identities=15% Similarity=0.160 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC---CCc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT---GRG 346 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~---GrG 346 (430)
++.+++.+++. ..+++++++.++.|++|.+.+ +.+|+++|++|+++||+||+|..-.++.. ...
T Consensus 163 ~~~l~~~~~~~----------~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~ 232 (404)
T PTZ00376 163 FDGMLEDLRTA----------PNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYA 232 (404)
T ss_pred HHHHHHHHHhC----------CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHH
Confidence 56777777542 013568889999999999987 77888889999999999999975444310 000
Q ss_pred cceecCCCCCCccEEEeCccchhcccc---cee---ecCHHHHHHH
Q psy2206 347 VTEYFGIDPREVDILMGTYTKSFGSMG---GYV---AGSKSTIDYI 386 (430)
Q Consensus 347 ~~e~~g~~~~~~dIv~~TlSKa~G~~G---G~v---~gs~~li~~l 386 (430)
+...... .+..|+++||||+|+++| ||+ ++++++++.+
T Consensus 233 ~~~~~~~--~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l 276 (404)
T PTZ00376 233 IRLFAER--GVEFLVAQSFSKNMGLYGERIGALHIVCANKEEAANV 276 (404)
T ss_pred HHHHHhc--CCcEEEEEeCCCcccccccccceEEEEeCCHHHHHHH
Confidence 1111111 124699999999999999 998 6788766544
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.2e-08 Score=103.79 Aligned_cols=110 Identities=17% Similarity=0.110 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC-CCccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT-GRGVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~-GrG~~ 348 (430)
+++|++.+++.... ..+.++|++.++.+++|.+.+ +.+|+++|++|+++||+||+|+.-++... -..+.
T Consensus 175 ~~~le~~~~~~~~~-------~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l 247 (468)
T PLN02450 175 ESALEEAYQQAQKL-------NLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVM 247 (468)
T ss_pred HHHHHHHHHHHHhc-------CCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHH
Confidence 46677776653211 113445555588999999987 77888889999999999999986555321 11211
Q ss_pred eec------CCCCCCccEEEeCccchhcccc---ceeecCH-HHHHHHHhc
Q psy2206 349 EYF------GIDPREVDILMGTYTKSFGSMG---GYVAGSK-STIDYIRAN 389 (430)
Q Consensus 349 e~~------g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~-~li~~l~~~ 389 (430)
... +..+.+..|+++||||.||++| ||+++++ .+++.+...
T Consensus 248 ~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l~~~~~~~ 298 (468)
T PLN02450 248 EVLKDRKLENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMVVSAATKM 298 (468)
T ss_pred HHhhhcccccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHHHHHHHHH
Confidence 111 1112345799999999999999 9999974 466766653
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.8e-08 Score=101.04 Aligned_cols=91 Identities=20% Similarity=0.229 Sum_probs=66.4
Q ss_pred EEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-
Q psy2206 298 ILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG- 373 (430)
Q Consensus 298 ~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G- 373 (430)
.+|++..+.+++|.+.+ +.+|+++|++|++++|+||+|..-+++.......... ...+..|+++||||.||++|
T Consensus 143 ~~v~~~~P~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~--~~~~~vi~~~S~SK~~gl~G~ 220 (354)
T PRK06358 143 DLVFLCNPNNPTGQLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYL--ENFKNLIIIRAFTKFFAIPGL 220 (354)
T ss_pred CEEEEeCCCCCCCCccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhc--cCCCCEEEEEechhhccCcch
Confidence 34445567999999987 8888889999999999999997544432111111122 22234699999999999999
Q ss_pred --ceeec-CHHHHHHHHhcC
Q psy2206 374 --GYVAG-SKSTIDYIRANS 390 (430)
Q Consensus 374 --G~v~g-s~~li~~l~~~~ 390 (430)
||+++ ++.+++.+....
T Consensus 221 RiG~lv~~~~~~~~~~~~~~ 240 (354)
T PRK06358 221 RLGYGLTSNKNLAEKLLQMR 240 (354)
T ss_pred hheeeecCCHHHHHHHHHhC
Confidence 99987 478888887754
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.7e-08 Score=98.28 Aligned_cols=80 Identities=28% Similarity=0.326 Sum_probs=60.8
Q ss_pred EEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc--
Q psy2206 299 LIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-- 373 (430)
Q Consensus 299 lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-- 373 (430)
+|++..+.+++|.+.+ +++|+++|++||++||+||+|...+++. .. .. .+..|+++||||+||++|
T Consensus 120 ~vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~--~~------~~-~~~vi~~~S~SK~~~l~GlR 190 (311)
T PRK08354 120 VVFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKP--ES------PE-GENIIKLRTFTKSYGLPGIR 190 (311)
T ss_pred EEEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccc--cc------cC-CCcEEEEeccHhhcCCccce
Confidence 4555677899999987 6777788899999999999997544432 11 11 245799999999999999
Q ss_pred -ceeecCHHHHHHHHhcC
Q psy2206 374 -GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 374 -G~v~gs~~li~~l~~~~ 390 (430)
||+++ +++.++...
T Consensus 191 iG~~v~---~~~~l~~~~ 205 (311)
T PRK08354 191 VGYVKG---FEEAFRSVR 205 (311)
T ss_pred eeeeee---hHHHHHHcC
Confidence 99988 566666543
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.5e-08 Score=103.24 Aligned_cols=86 Identities=20% Similarity=0.210 Sum_probs=62.9
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC-CCccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT-GRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~-GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
.++|++.++.+++|.+.+ +.+|+++|++|+++||.||+|+.-.+... -..+....+. .+..|+++||||+||++
T Consensus 177 ~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~--~~~vi~~~SfSK~~~~p 254 (409)
T PRK07590 177 VDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGA--RECAIEFRSFSKTAGFT 254 (409)
T ss_pred ceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCc--ccceEEEecCccccCCc
Confidence 345555588999999987 67788889999999999999985443221 0111111111 23468899999999999
Q ss_pred c---ceeecCHHHHH
Q psy2206 373 G---GYVAGSKSTID 384 (430)
Q Consensus 373 G---G~v~gs~~li~ 384 (430)
| ||+++++++++
T Consensus 255 GlRiG~~i~~~~li~ 269 (409)
T PRK07590 255 GTRCAYTVVPKELKG 269 (409)
T ss_pred CceeEEEEcCHHHhh
Confidence 9 99999999987
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-08 Score=103.03 Aligned_cols=107 Identities=19% Similarity=0.200 Sum_probs=80.2
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++.+|++|++.+++|.+.|+++|+++|+++|+++||||+|... +|. .. +. ..+||+++|++|.++.
T Consensus 132 ~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~-~~~---~p-----~~-~g~Divv~S~sK~l~G~~g~ 201 (366)
T PRK07582 132 GADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATP-LGQ---RP-----LE-LGADLVVASDTKALTGHSDL 201 (366)
T ss_pred CceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCc-ccc---Cc-----hh-cCCcEEEecccccccCCCCe
Confidence 4568889999999999999999999999999999999998643 221 11 11 2358999999999953
Q ss_pred ccceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.+||+++ ++++++.++... .+ .+..++|..++.++..|+.+
T Consensus 202 ~~G~v~~~~~~l~~~l~~~~-~~-~g~~~~~~~a~l~~r~l~tl 243 (366)
T PRK07582 202 LLGYVAGRDPELMAAVERWR-LL-AGAIPGPFEAWLAHRSLGTL 243 (366)
T ss_pred eEEEEEcCcHHHHHHHHHHH-HH-hCCCCCHHHHHHHHhccccH
Confidence 3588876 578888776533 22 34567888888777776654
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.2e-08 Score=101.57 Aligned_cols=105 Identities=18% Similarity=0.213 Sum_probs=73.6
Q ss_pred EEEEEcCccCCCCcccCHHHHHHHHHhc--CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc--
Q psy2206 298 ILIVVEGIFSMDGSIVRLPEIVRLKNKY--KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-- 373 (430)
Q Consensus 298 ~lIi~E~v~sm~G~i~~L~~I~~La~~y--~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-- 373 (430)
++|++.++.+++|.+.+.+++.++++.. +++||+||+|+.-.. .+.. .... ...+..|+++||||+||++|
T Consensus 156 k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~--~~~~-~~~~--~~~~~vi~~~SfSK~~~~~GlR 230 (357)
T PRK14809 156 RIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAE--RPSA-VALV--EERDDVAVLRTFSKAYGLAGLR 230 (357)
T ss_pred cEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccC--Cchh-HHHH--hhCCCEEEEecchhHhcCcchh
Confidence 3555569999999999988888777654 789999999975432 1211 1111 11234688999999999999
Q ss_pred -ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 -GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 -G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.+...... ...+++...+++++|
T Consensus 231 iG~~~~~~~~~~~~~~~~~~----~~~~~~~~~~a~~~l 265 (357)
T PRK14809 231 LGYAVVPEEWADAYARVNTP----FAASELACRAGLAAL 265 (357)
T ss_pred heeeecCHHHHHHHHHhCCC----CCCCHHHHHHHHHHh
Confidence 9999999999988875422 224555555555555
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.6e-08 Score=105.09 Aligned_cols=93 Identities=17% Similarity=0.282 Sum_probs=69.1
Q ss_pred CCccceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC-------HHHHHHHHHHHhhcCCCCCCCCCceEEEE
Q psy2206 229 GTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA-------PSSLEAGLQKALLEGQPHSGKPWRKILIV 301 (430)
Q Consensus 229 G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~-------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi 301 (430)
|+.+++|||+|||||||++|| .+++++++++++||+++++||+ -++||+.|.+.. +. ..++++
T Consensus 99 ~~~r~~l~FsSndYLGL~~~p-~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~--g~-------e~all~ 168 (476)
T PLN02955 99 GRFKKLLLFSGNDYLGLSSHP-TISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLK--KK-------EDCLVC 168 (476)
T ss_pred CCCceEEEeeccCccCCCCCH-HHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHH--CC-------CcEEEE
Confidence 444899999999999999986 8999999999999999999999 277999998742 21 233332
Q ss_pred EcCccCCCCcccCHHHHHHHH-------------HhcCcEEEEec-cccc
Q psy2206 302 VEGIFSMDGSIVRLPEIVRLK-------------NKYKAYLYVDE-AHSI 337 (430)
Q Consensus 302 ~E~v~sm~G~i~~L~~I~~La-------------~~y~~~LivDE-Ah~~ 337 (430)
. .|-.+.+..|..|+ ...+.+++.|+ +|..
T Consensus 169 s------SGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaS 212 (476)
T PLN02955 169 P------TGFAANMAAMVAIGSVASLLAASGKPLKNEKVAIFSDALNHAS 212 (476)
T ss_pred C------ChHHHHHHHHHHHhhccccccccccccCCCCcEEEEeccchHH
Confidence 2 35556666666653 23466788898 5654
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.7e-08 Score=102.74 Aligned_cols=80 Identities=16% Similarity=0.214 Sum_probs=58.5
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+.+ +++|+++|++||++||+||+|+.-.++.. -......+.++...|+++||||+||++|
T Consensus 169 ~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~--~~~~~~~~~~~~~vi~~~S~SK~~~~pG 246 (404)
T PRK09265 169 TKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGA--VHISIASLAPDLLCVTFNGLSKAYRVAG 246 (404)
T ss_pred ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCC--CcCCHHHcCCCceEEEEecchhhccCcc
Confidence 446666678999999998 89999999999999999999975444321 1111111222234578899999999998
Q ss_pred ---ceeec
Q psy2206 374 ---GYVAG 378 (430)
Q Consensus 374 ---G~v~g 378 (430)
||+++
T Consensus 247 lRiG~~v~ 254 (404)
T PRK09265 247 FRVGWMVL 254 (404)
T ss_pred cceEEEEE
Confidence 99884
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.3e-08 Score=100.75 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=75.3
Q ss_pred EEEEcCccCCCCcccCHHHHHHHHHhc-CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc---c
Q psy2206 299 LIVVEGIFSMDGSIVRLPEIVRLKNKY-KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG---G 374 (430)
Q Consensus 299 lIi~E~v~sm~G~i~~L~~I~~La~~y-~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G---G 374 (430)
+|++.++.+++|.+.+.+++.+|++.+ ++++|+||+|.. |+. ......... .+.+|+++||||++|++| |
T Consensus 147 ~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~--~~~--~~~~~~~~~--~~~~i~~~S~SK~~~~~GlR~G 220 (353)
T PRK05387 147 GIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVD--FGG--ESAIPLIDR--YPNLLVVQTFSKSRSLAGLRVG 220 (353)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccc--cCC--cchHHHHhh--CCCEEEEEehhHhhcchhhhce
Confidence 567778899999999999999999876 999999999953 432 111111111 234799999999999999 9
Q ss_pred eeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 375 YVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 375 ~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
|+++++++++.++.....+ .+.+.+++..+++.+++
T Consensus 221 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~q~~~~~~l 256 (353)
T PRK05387 221 FAIGHPELIEALNRVKNSF-NSYPLDRLAQAGAIAAI 256 (353)
T ss_pred eeecCHHHHHHHHHhhccC-CCCCcCHHHHHHHHHHh
Confidence 9999999999988754322 12234444444444554
|
|
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.6e-08 Score=99.82 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=70.9
Q ss_pred EEEEcCccCCCCcccCHHHHHHH---HHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc--
Q psy2206 299 LIVVEGIFSMDGSIVRLPEIVRL---KNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-- 373 (430)
Q Consensus 299 lIi~E~v~sm~G~i~~L~~I~~L---a~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-- 373 (430)
+|++..+.+++|.+.+.+++.++ |++++.++|+||+|.-.... ..+.... . .+..|+++||||+||++|
T Consensus 133 ~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~---~s~~~~~--~-~~~vi~l~SfSK~~gl~GlR 206 (339)
T PRK06959 133 HLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPA---ASLAAHT--D-RPGLVVLRSVGKFFGLAGVR 206 (339)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCc---ccchhcc--C-CCCEEEEecChhhcCCcchh
Confidence 46666678999999986666655 56789999999999753211 1221111 1 123589999999999999
Q ss_pred -ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 -GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 -G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.++....++ + .+.+..+++.++|
T Consensus 207 iGy~v~~~~li~~l~~~~~~~--~--vs~~~q~a~~~~L 241 (339)
T PRK06959 207 AGFVLAAPALLAALRDALGAW--T--VSGPARHAVRAAF 241 (339)
T ss_pred eEEEecCHHHHHHHHHhcCCC--C--CcHHHHHHHHHHh
Confidence 99999999999998865432 2 2334444455554
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-08 Score=100.30 Aligned_cols=108 Identities=13% Similarity=0.146 Sum_probs=74.6
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc---
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG--- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G--- 373 (430)
+.++++.++.+++|.+.+.++|.++++++++ +|+||+|.--++............ ..+..|+++||||+||++|
T Consensus 149 ~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~--~~~~vi~i~S~SK~~~l~GlRi 225 (360)
T PRK07392 149 NDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLA--EYPNLIILRSLTKFYSLPGLRL 225 (360)
T ss_pred CCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhh--cCCCEEEEEechhhhcCCchhe
Confidence 4466777889999999999999999999985 677999975433221111111111 1234699999999999999
Q ss_pred ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.+...... + +.+.+...++.++|
T Consensus 226 G~~v~~~~~~~~~~~~~~~--~--~~s~~~q~~~~~~l 259 (360)
T PRK07392 226 GYAIAHPDRLQRWQQWRDP--W--PVNGLAAAAAIAAL 259 (360)
T ss_pred eeeeCCHHHHHHHHhhCCC--C--CCCHHHHHHHHHHh
Confidence 9999999999888764321 2 24444444444444
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.9e-08 Score=100.78 Aligned_cols=91 Identities=16% Similarity=0.210 Sum_probs=65.3
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhc--CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKY--KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y--~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G- 373 (430)
+.+|++..+.+++|.+.+.+++.++++.. +++||+||||.... .. ......... .+..|++.||||+||++|
T Consensus 146 ~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~--~~-~s~~~~~~~--~~n~iv~rSfSK~~glaGl 220 (351)
T PRK01688 146 VKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFC--PQ-ASLAGWLAE--YPHLVILRTLSKAFALAGL 220 (351)
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcC--CC-CChHHHHhh--CCCEEEEecchHhhcCHHH
Confidence 44677779999999999877766666432 68999999996432 11 111111111 123689999999999999
Q ss_pred --ceeecCHHHHHHHHhcCCc
Q psy2206 374 --GYVAGSKSTIDYIRANSHV 392 (430)
Q Consensus 374 --G~v~gs~~li~~l~~~~~~ 392 (430)
||+++++++++.++....+
T Consensus 221 RiGy~i~~~~~i~~l~~~~~~ 241 (351)
T PRK01688 221 RCGFTLANEEVINLLLKVIAP 241 (351)
T ss_pred HHhHHhCCHHHHHHHHhccCC
Confidence 9999999999999875544
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.5e-08 Score=101.88 Aligned_cols=81 Identities=19% Similarity=0.180 Sum_probs=59.3
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+.+ +++|+++|++||+++|+||+|+.-.++. ........+.+....|+++||||+|+++|
T Consensus 170 ~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~--~~~~~~~~~~~~~~vi~~~S~SK~~~~pG 247 (403)
T TIGR01265 170 TVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGD--APFIPMASFASIVPVLSLGGISKRWVVPG 247 (403)
T ss_pred ccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCC--CCccchhhhccCCcEEEEeecccccCCCc
Confidence 446666778899999976 8999999999999999999998655532 11111111222223689999999999998
Q ss_pred ---ceeecC
Q psy2206 374 ---GYVAGS 379 (430)
Q Consensus 374 ---G~v~gs 379 (430)
||++++
T Consensus 248 lRiG~~v~~ 256 (403)
T TIGR01265 248 WRLGWIIIH 256 (403)
T ss_pred ceEEEEEEe
Confidence 998873
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-08 Score=105.69 Aligned_cols=133 Identities=16% Similarity=0.193 Sum_probs=89.3
Q ss_pred HHHHHHhCCCCCCCC---CHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEec
Q psy2206 257 KESVKQSGCALCSPS---APSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDE 333 (430)
Q Consensus 257 ~~ai~~yG~g~~~sr---~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDE 333 (430)
...+.++|+...-.. .+++|++++++ ++++|++|++.++.+.+.|+++|+++|++||++||+|+
T Consensus 118 ~~~l~~~Gi~v~~vd~~~d~~~l~~~I~~-------------~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~ 184 (432)
T PRK06702 118 GVSLRKLGIDVTFFNPNLTADEIVALAND-------------KTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDN 184 (432)
T ss_pred HHHHHHCCCEEEEECCCCCHHHHHHhCCc-------------CCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEEC
Confidence 344566676332211 25677777653 46688899999999999999999999999999999999
Q ss_pred cccccccCCCCCccceecCCCCCCccEEEeCccchhc----cccceeecCH----------HHH----------------
Q psy2206 334 AHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG----SMGGYVAGSK----------STI---------------- 383 (430)
Q Consensus 334 Ah~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G----~~GG~v~gs~----------~li---------------- 383 (430)
+++...+- . .+. ..+||++.|+||.++ ..||.++... +++
T Consensus 185 T~~tP~~~-------~--pl~-~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~ 254 (432)
T PRK06702 185 TLATPYLC-------Q--AFE-HGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFG 254 (432)
T ss_pred CCCchhhC-------C--hhh-cCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccc
Confidence 98654321 1 122 356999999999775 3556665321 111
Q ss_pred -----HHHH-hcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 384 -----DYIR-ANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 384 -----~~l~-~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
...+ ...+ .++++++|..++.++..|+.+
T Consensus 255 ~~~~~~~~~~~~~~--~~g~~~sp~~a~l~~rgL~Tl 289 (432)
T PRK06702 255 AAAYIVKARVQLLR--DYGNCMSPFNAYISNIGLETL 289 (432)
T ss_pred hhhHHHHHHHHHHH--HccCCCCHHHHHHHHhccCcH
Confidence 1111 1111 246689999999888877665
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.4e-08 Score=104.24 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=64.4
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCC---CccceecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTG---RGVTEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~G---rG~~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
++++|++.++.+++|.+.+ +++|+++|++||++||+||+|..-+++... ..+..... . .+..|+++||||+|
T Consensus 194 ~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~-~-~~~vI~~~SfSK~~ 271 (423)
T PLN02397 194 GSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVE-D-GHEILVAQSYAKNM 271 (423)
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHh-c-CCcEEEEEECcccC
Confidence 4678999999999999987 777888999999999999999865554211 11111111 1 12368999999999
Q ss_pred cccc---ceee---cCHHHHHH
Q psy2206 370 GSMG---GYVA---GSKSTIDY 385 (430)
Q Consensus 370 G~~G---G~v~---gs~~li~~ 385 (430)
+++| ||++ +++++++.
T Consensus 272 ~~~G~RvG~~v~~~~~~~~~~~ 293 (423)
T PLN02397 272 GLYGERVGALSVVCKSADVAVR 293 (423)
T ss_pred CCccccceEEEEEeCCHHHHHH
Confidence 9999 9973 46666543
|
|
| >KOG0053|consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=4e-08 Score=100.84 Aligned_cols=107 Identities=15% Similarity=0.149 Sum_probs=85.2
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhc----c
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG----S 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G----~ 371 (430)
++.+|.+|++-||...+.|+++|.++|++||++++||++.+.+++ +.-+. ..+||++.|++|.|| .
T Consensus 162 ~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~-------~~pL~---lGADIV~hSaTKyi~Ghsdv 231 (409)
T KOG0053|consen 162 NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYN-------QDPLP---LGADIVVHSATKYIGGHSDV 231 (409)
T ss_pred CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccc-------cChhh---cCCCEEEEeeeeeecCCcce
Confidence 578999999999999999999999999999999999999654432 11222 346999999999997 4
Q ss_pred ccceeecC-HHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAGS-KSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~gs-~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
+||.++.+ .++...++..... ....++|..+...++.++.+
T Consensus 232 i~G~iv~n~~~~~~~l~~~~~~--lg~~~~p~~~~ll~Rglktl 273 (409)
T KOG0053|consen 232 IGGSVVLNSEELASRLKFLQED--LGWCEDPFDLFLLSRGLKTL 273 (409)
T ss_pred eeeEEecCcHHHHHHHHHHHHH--hcCCCCHHHHHHHhcCcchh
Confidence 67888885 8888887765432 35668999999888776655
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.8e-08 Score=106.23 Aligned_cols=79 Identities=18% Similarity=0.134 Sum_probs=59.8
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhc--CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKY--KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y--~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~ 371 (430)
+++|++..+.+++|.+.+ +.+|+++|++| +++||+||+|+.-+. ....+... .+ +..|+++||||+||+
T Consensus 241 ~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~--~~~sl~~~---~~-~~vI~v~SfSK~fg~ 314 (521)
T TIGR03801 241 IKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD--DFRSLFAE---LP-YNTIGVYSFSKYFGA 314 (521)
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc--cccchhhh---CC-CCEEEEEcchhhccC
Confidence 456666688999999988 78888889887 999999999985332 12222222 22 357999999999999
Q ss_pred cc---ceeecCHH
Q psy2206 372 MG---GYVAGSKS 381 (430)
Q Consensus 372 ~G---G~v~gs~~ 381 (430)
+| ||++++++
T Consensus 315 ~G~RlG~i~~~~~ 327 (521)
T TIGR03801 315 TGWRLGTIALHKD 327 (521)
T ss_pred chhhhhhhhcCch
Confidence 99 99998765
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.9e-08 Score=97.64 Aligned_cols=128 Identities=13% Similarity=0.053 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.|.+. ...++++. ..+++|.+.|+++|.++|++||++|+|||||+.++++....+. .+.
T Consensus 141 ~~~l~~~i~~~------------~~~vi~~~-~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~--~~~ 205 (371)
T PRK13520 141 VKAVEDLIDDN------------TIGIVGIA-GTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPP--NFD 205 (371)
T ss_pred HHHHHHHHhhC------------CEEEEEEc-CCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCC--Ccc
Confidence 67888877641 12344444 4578999999999999999999999999999866532111111 112
Q ss_pred CCCCCccEEEeCccchhc--c-ccceeecCHHHHHHHHhcCCccccc-------CCCcHHHHHHHHHHHHHHHc
Q psy2206 353 IDPREVDILMGTYTKSFG--S-MGGYVAGSKSTIDYIRANSHVRSYA-------TSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G--~-~GG~v~gs~~li~~l~~~~~~~~~s-------~s~~P~~~aaalaaL~~l~~ 416 (430)
.....+|.+..|.+|... . .|++++.++++++.+.. ..++.++ .+.++..++++.++|+.+.+
T Consensus 206 ~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~gt~~~~~~~~~~~al~~l~~ 278 (371)
T PRK13520 206 FSLPGVDSITIDPHKMGLAPIPAGGILFRDESYLDALAV-DTPYLTSKKQATLTGTRSGAGVAATYAVMKYLGR 278 (371)
T ss_pred ccCCCCceEEECCccccCccCCceEEEEcCHHHHHhhcc-cCccccCCCCcceEeeccChHHHHHHHHHhhhcH
Confidence 212346788888889543 2 23456567778887753 2233221 12334456667778877643
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.3e-08 Score=108.55 Aligned_cols=137 Identities=15% Similarity=0.117 Sum_probs=83.7
Q ss_pred HHHHHHHHHHhhcCCCCCC---CCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccc-cCCCCCccce
Q psy2206 274 SSLEAGLQKALLEGQPHSG---KPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGA-LGPTGRGVTE 349 (430)
Q Consensus 274 ~~Le~~L~~~~~~~~p~~~---~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~-lG~~GrG~~e 349 (430)
+.+++.|+++. ... ......+||+.+-| +|.+.++++|+++|+++++.|+|||||+..+ |++ .+..
T Consensus 293 e~i~~~l~~~p-----~~k~~~~~~~~avvlt~PTY--~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~---~~p~ 362 (755)
T PRK15029 293 ETLQKKISESP-----LTKDKAGQKPSYCVVTNCTY--DGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNP---IYAD 362 (755)
T ss_pred HHHHHHHHhCc-----hhhhccccCceEEEEECCCC--cceeeCHHHHHHHHHhcCCeEEEECccccccccCc---cccc
Confidence 57788886631 110 00113678887777 7999999999999999999999999998654 332 1221
Q ss_pred ecCC-----CCCCcc-EEEeCccchhcc--ccceeecCHH--HH--HHHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 350 YFGI-----DPREVD-ILMGTYTKSFGS--MGGYVAGSKS--TI--DYIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 350 ~~g~-----~~~~~d-Iv~~TlSKa~G~--~GG~v~gs~~--li--~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
+..+ .....| +++.|.+|.+++ +++++..... .+ +.++. +.....|||++-+.+|..-.|.+.+...
T Consensus 363 ~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~id~~r~~~-~l~~~qSTSPSY~LmASLD~ar~~m~~~ 441 (755)
T PRK15029 363 HYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQ-AYMMHATTSPLYAICASNDVAVSMMDGN 441 (755)
T ss_pred cccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccccCHHHHHH-HHHHHcCCCcHHHHHHHHHHHHHHHhhh
Confidence 1222 113457 999999999974 5567654322 22 23333 2122235666666666555566665543
Q ss_pred CCch
Q psy2206 418 ENGD 421 (430)
Q Consensus 418 ~~~~ 421 (430)
.|..
T Consensus 442 ~G~~ 445 (755)
T PRK15029 442 SGLS 445 (755)
T ss_pred hhHH
Confidence 4533
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-07 Score=100.41 Aligned_cols=88 Identities=23% Similarity=0.299 Sum_probs=63.7
Q ss_pred EEEEcCccCCCC--cccCHHHHHHHHHhcCcEEEEeccccccccCCCCC-cccee---cCCCCCCccEEEeCccchhc-c
Q psy2206 299 LIVVEGIFSMDG--SIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGR-GVTEY---FGIDPREVDILMGTYTKSFG-S 371 (430)
Q Consensus 299 lIi~E~v~sm~G--~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr-G~~e~---~g~~~~~~dIv~~TlSKa~G-~ 371 (430)
+++..+.|+|+| .+.|+++|+++|++||+++++|. +.|++++.+. |+... .......+|+++.|.+|.+| .
T Consensus 216 ~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~--~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp 293 (454)
T TIGR00474 216 LKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDL--GSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGP 293 (454)
T ss_pred EEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEEC--CCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCC
Confidence 344455567778 58999999999999999999996 4666765432 22211 11111357999999999996 4
Q ss_pred ccceeecCHHHHHHHHh
Q psy2206 372 MGGYVAGSKSTIDYIRA 388 (430)
Q Consensus 372 ~GG~v~gs~~li~~l~~ 388 (430)
.||++++++++++.++.
T Consensus 294 ~~G~i~g~~~~i~~l~~ 310 (454)
T TIGR00474 294 QAGIIVGKKELIERLKK 310 (454)
T ss_pred eEEEEEECHHHHHhhhh
Confidence 58999999999887664
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.4e-09 Score=107.99 Aligned_cols=132 Identities=17% Similarity=0.185 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCce---EEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccc-cCCCCCccce
Q psy2206 274 SSLEAGLQKALLEGQPHSGKPWRK---ILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGA-LGPTGRGVTE 349 (430)
Q Consensus 274 ~~Le~~L~~~~~~~~p~~~~~~~~---~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~-lG~~GrG~~e 349 (430)
++|+++|++. | ..+ .+||+.+-| +|.+.++++|+++|+++++.|+|||||+..+ |.+ -...
T Consensus 154 ~~i~~~l~~~-----p-----~~k~~~~vvlt~PTY--~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~---lp~~ 218 (417)
T PF01276_consen 154 EDIEEALKEH-----P-----DAKAPRLVVLTSPTY--YGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHP---LPRS 218 (417)
T ss_dssp HHHHHHHHHC-----T-----TCHCESEEEEESS-T--TSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSG---GGTT
T ss_pred HHHHHHHHhC-----c-----cccCceEEEEeCCCC--CeEEECHHHHHHHhcccCCEEEEEccccccccCCC---Cccc
Confidence 7788888874 2 223 377888777 7999999999999999999999999998654 211 1111
Q ss_pred ecCCCCCCcc-------EEEeCccchhcc--ccceeecCHHH-H--HHHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 350 YFGIDPREVD-------ILMGTYTKSFGS--MGGYVAGSKST-I--DYIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 350 ~~g~~~~~~d-------Iv~~TlSKa~G~--~GG~v~gs~~l-i--~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
... ...| +++.|.+|.+++ +++++....+. + +.++. +.....|||++-+.+|....+.+.++.+
T Consensus 219 a~~---~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~-~l~~~~TTSPSY~lmASlD~a~~~m~~~ 294 (417)
T PF01276_consen 219 ALA---LGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNE-ALSMHQTTSPSYPLMASLDVARAQMEEE 294 (417)
T ss_dssp CSS---TTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHH-HHHHHS-SS--HHHHHHHHHHHHHHSHH
T ss_pred hhh---ccCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHH-HHHHHcCCChHHHHHHHHHHHHHHHhhh
Confidence 111 2345 999999999984 56777654442 2 33433 2222346667766666666666666355
Q ss_pred CCchHHH
Q psy2206 418 ENGDEGN 424 (430)
Q Consensus 418 ~~~~~~~ 424 (430)
.|....+
T Consensus 295 ~G~~l~~ 301 (417)
T PF01276_consen 295 EGRELLE 301 (417)
T ss_dssp HHHHHHH
T ss_pred hhHHHHH
Confidence 5543333
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.9e-07 Score=95.04 Aligned_cols=155 Identities=19% Similarity=0.234 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHhCCCCC-------CCCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHH
Q psy2206 251 LCTERSKESVKQSGCALC-------SPSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKN 323 (430)
Q Consensus 251 ~v~~a~~~ai~~yG~g~~-------~sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~ 323 (430)
.....+.+..+++|.... +.-.++++++.|.+ ++.+|++..+.+.+|.+.|+++|.++|+
T Consensus 100 s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~-------------~~~lv~~~~~~~~tG~~~pi~~I~~~~~ 166 (371)
T PF00266_consen 100 SNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNP-------------DTRLVSISHVENSTGVRNPIEEIAKLAH 166 (371)
T ss_dssp HHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHT-------------TESEEEEESBETTTTBBSSHHHHHHHHH
T ss_pred ccccccccccccchhhhccccccccchhhhhhhhhhhcc-------------ccceEEeecccccccEEeeeceehhhhh
Confidence 445566667778886321 22226888888864 4668889999999999999999999999
Q ss_pred hcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-ceeecCHHHHHHHHhcCCccc--------
Q psy2206 324 KYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIRANSHVRS-------- 394 (430)
Q Consensus 324 ~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~~~~~~~~-------- 394 (430)
++|+++++|=+|++|.+. ..+...++|++++|..|-+|.+| |++..+++.++.++....+..
T Consensus 167 ~~~~~~~vD~~~~~g~~~---------id~~~~~~D~~~~s~~Kl~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~ 237 (371)
T PF00266_consen 167 EYGALLVVDAAQSAGCVP---------IDLDELGADFLVFSSHKLGGPPGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQ 237 (371)
T ss_dssp HTTSEEEEE-TTTTTTSS-----------TTTTTESEEEEESTSTTSSSTEEEEEEEHHHHHHHHTSSSSSSTTTHHHHH
T ss_pred ccCCceeEechhcccccc---------ccccccccceeeecccccCCCCchhhheehhhhhhccccccccccccccccch
Confidence 999999999999987542 23333467999999999335566 889999999998864332211
Q ss_pred ----------c-cCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 395 ----------Y-ATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 395 ----------~-s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
| ..+++.....+..++++.+. +.+.+..+++..
T Consensus 238 ~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~-~~g~~~i~~~~~ 281 (371)
T PF00266_consen 238 EYGLADDARRFEGGTPNVPAIYALNEALKLLE-EIGIERIRERIR 281 (371)
T ss_dssp HHCHHSTTTGSSSSS--HHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred hcccccccccccccceeeehhhhHHHHHhhhh-ccccccchhhhh
Confidence 1 12355555666777888883 334444444443
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.8e-08 Score=102.86 Aligned_cols=111 Identities=15% Similarity=0.159 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCC--Ccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTG--RGV 347 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~G--rG~ 347 (430)
+++|++.+.+.... ..++++|++-.+.|++|.+.+ +++|+++|++||++||+||+|...++.... ..+
T Consensus 202 ~~~l~~~l~~~~~~-------~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~ 274 (481)
T PTZ00377 202 QEELEEAYEQAVRN-------GITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISF 274 (481)
T ss_pred HHHHHHHHHHHHhc-------CCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccH
Confidence 57788887653110 013445555588999999998 899999999999999999999866663111 111
Q ss_pred cee-cCCCCC----CccEEEeCccch-hcccc---ceeec---CHHHHHHHHhcC
Q psy2206 348 TEY-FGIDPR----EVDILMGTYTKS-FGSMG---GYVAG---SKSTIDYIRANS 390 (430)
Q Consensus 348 ~e~-~g~~~~----~~dIv~~TlSKa-~G~~G---G~v~g---s~~li~~l~~~~ 390 (430)
... .++.+. ...|+++||||+ +|++| ||+++ ++++++.+....
T Consensus 275 ~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li~~l~~~~ 329 (481)
T PTZ00377 275 RKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVREQIYKLA 329 (481)
T ss_pred HHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHHHHHHHHh
Confidence 110 112111 135889999998 48888 99985 899999887744
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.4e-08 Score=99.53 Aligned_cols=86 Identities=21% Similarity=0.242 Sum_probs=64.2
Q ss_pred EEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-
Q psy2206 298 ILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG- 373 (430)
Q Consensus 298 ~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G- 373 (430)
++|++..+.+++|.+.+ +++|+++|++||+++|+||+|+.-..+ .... ..+.+ +.+|++.||||.+|++|
T Consensus 159 ~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~---~~~~--~~~~~-~~~i~~~s~SK~~g~~G~ 232 (380)
T PRK06225 159 RLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFARE---HTLA--AEYAP-EHTVTSYSFSKIFGMAGL 232 (380)
T ss_pred eEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhcc---CCch--hhcCC-CCEEEEeechhhcCCccc
Confidence 34544467889999775 999999999999999999998532111 1111 11222 45788999999999888
Q ss_pred --ceeecCHHHHHHHHhc
Q psy2206 374 --GYVAGSKSTIDYIRAN 389 (430)
Q Consensus 374 --G~v~gs~~li~~l~~~ 389 (430)
||+++++++++.++..
T Consensus 233 RiG~i~~~~~l~~~~~~~ 250 (380)
T PRK06225 233 RIGAVVATPDLIEVVKSI 250 (380)
T ss_pred eeEEEecCHHHHHHHHHH
Confidence 9999999999988764
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.8e-08 Score=99.76 Aligned_cols=85 Identities=22% Similarity=0.276 Sum_probs=63.2
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCC-CccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTG-RGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~G-rG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
..+|++..+.+++|.+.+ +++|+++|++|+++||+||+|...+++..- ..+....+. .+..|+++||||.||++
T Consensus 174 ~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~--~~~vi~~~SfSK~~g~p 251 (402)
T TIGR03542 174 IDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGA--KECAIEFRSFSKTAGFT 251 (402)
T ss_pred ceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCC--cccEEEEecCccccCCC
Confidence 345555589999999998 888999999999999999999865443210 111111111 13468899999999999
Q ss_pred c---ceeecCHHHH
Q psy2206 373 G---GYVAGSKSTI 383 (430)
Q Consensus 373 G---G~v~gs~~li 383 (430)
| ||++++++++
T Consensus 252 GlRiG~~i~~~~l~ 265 (402)
T TIGR03542 252 GVRLGWTVVPKELT 265 (402)
T ss_pred CcceEEEEecHHHh
Confidence 9 9999999887
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=98.71 E-value=1e-07 Score=100.39 Aligned_cols=110 Identities=22% Similarity=0.205 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC-CCccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT-GRGVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~-GrG~~ 348 (430)
++++|++++++... ..+.++|++..+.+++|.+.+ +.+|+++|++|+++||+||+|+..+++.. ...+.
T Consensus 184 ~~~le~a~~~a~~~-------~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~ 256 (447)
T PLN02607 184 PQALEAAYQEAEAA-------NIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVA 256 (447)
T ss_pred HHHHHHHHHHHHHh-------CCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHH
Confidence 57788877664211 124556667788999999988 88999999999999999999987777532 11222
Q ss_pred ee---cCC-CCCCccEEEeCccchhcccc---ceeec-CHHHHHHHHhc
Q psy2206 349 EY---FGI-DPREVDILMGTYTKSFGSMG---GYVAG-SKSTIDYIRAN 389 (430)
Q Consensus 349 e~---~g~-~~~~~dIv~~TlSKa~G~~G---G~v~g-s~~li~~l~~~ 389 (430)
+. .+. ...+..+++.||||.||++| ||+++ ++++++.++..
T Consensus 257 s~~~~~~~~~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~~~~~~~ 305 (447)
T PLN02607 257 EIVEARGYKGVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVVTTARRM 305 (447)
T ss_pred HHHhhcCCCCCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHHHHHHHH
Confidence 21 111 10234688999999999999 99987 67888877764
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.1e-08 Score=100.85 Aligned_cols=89 Identities=20% Similarity=0.132 Sum_probs=65.6
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++.++.+++|.+.+ +.+|+++|++|+++||+||+|+..+-......... .. .+..|+++||||. +++|
T Consensus 180 ~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~--~~--~~~vI~~~SfSK~-~~pG 254 (416)
T PRK09440 180 TGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEATP--LW--NPNIILCMSLSKL-GLPG 254 (416)
T ss_pred ceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhcCc--cc--cCCeEEEeccccc-CCCc
Confidence 456777788999999988 78888899999999999999964211100000000 01 2346899999996 8888
Q ss_pred ---ceeecCHHHHHHHHhcC
Q psy2206 374 ---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~ 390 (430)
||+++++++++.+....
T Consensus 255 lRiG~~i~~~~l~~~~~~~~ 274 (416)
T PRK09440 255 VRCGIVIADEEIIEALSNMN 274 (416)
T ss_pred ceEEEEeCCHHHHHHHHHHH
Confidence 99999999999888754
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.9e-08 Score=98.57 Aligned_cols=92 Identities=17% Similarity=0.213 Sum_probs=64.2
Q ss_pred EEEEEcCccCCCCcccCHHHHHHHHHh--cCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc--
Q psy2206 298 ILIVVEGIFSMDGSIVRLPEIVRLKNK--YKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-- 373 (430)
Q Consensus 298 ~lIi~E~v~sm~G~i~~L~~I~~La~~--y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-- 373 (430)
++|++..+.+++|.+.+.+++.++++. .++++|+||+|.....+........... ...+..|+++||||+||++|
T Consensus 161 ~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~~vi~i~SfSK~~~l~GlR 239 (371)
T PRK05166 161 RMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLK-ARGLPWIVLRTFSKAYGLAGLR 239 (371)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHh-hcCCCEEEEeechHhhhcchhh
Confidence 467778899999999997777666653 4889999999976544322122111111 11123689999999999999
Q ss_pred -ceee-cCHHHHHHHHhcC
Q psy2206 374 -GYVA-GSKSTIDYIRANS 390 (430)
Q Consensus 374 -G~v~-gs~~li~~l~~~~ 390 (430)
||++ +++++++.+....
T Consensus 240 iG~~i~~~~~l~~~~~~~~ 258 (371)
T PRK05166 240 VGYGLVSDPELVGLLDRVR 258 (371)
T ss_pred eeeeecCCHHHHHHHHHhc
Confidence 9965 5788988887643
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.1e-07 Score=96.40 Aligned_cols=129 Identities=16% Similarity=0.125 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCC--CCcccee
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPT--GRGVTEY 350 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~--GrG~~e~ 350 (430)
+++|++++.+. ...++++.+ .+++|.+.|+++|.++|++||+++++|+||+.++++-. |.+.. .
T Consensus 143 ~~~l~~~l~~~------------~~~vv~~~~-~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~-~ 208 (373)
T TIGR03812 143 VKDVEDLIDDN------------TIGIVGIAG-TTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPP-P 208 (373)
T ss_pred HHHHHHHHhhC------------cEEEEEECC-CCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCC-C
Confidence 67777777541 134555554 67899999999999999999999999999986653211 11110 0
Q ss_pred cCCCCCCccEEEeCccchh-cc--ccceeecCHHHHHHHHhcCCccccc-------CCCcHHHHHHHHHHHHHHHc
Q psy2206 351 FGIDPREVDILMGTYTKSF-GS--MGGYVAGSKSTIDYIRANSHVRSYA-------TSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 351 ~g~~~~~~dIv~~TlSKa~-G~--~GG~v~gs~~li~~l~~~~~~~~~s-------~s~~P~~~aaalaaL~~l~~ 416 (430)
..+....+|.+..+.+|.. +. .||+++.++++++.++.. .++++. .+.++..++++.++|+.+.+
T Consensus 209 ~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~ 283 (373)
T TIGR03812 209 FDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYLSVD-APYLTVKKQATITGTRSGASAAATYAVIKYLGR 283 (373)
T ss_pred ccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHhhhccc-CcccCCCCCcceEeechhHHHHHHHHHHHHhCH
Confidence 1111124577777888932 21 345677889998887542 233322 23455667777788887643
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.4e-08 Score=103.57 Aligned_cols=137 Identities=19% Similarity=0.271 Sum_probs=90.8
Q ss_pred HHHHHHHHHhCCCCCCC--CCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEE
Q psy2206 254 ERSKESVKQSGCALCSP--SAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYV 331 (430)
Q Consensus 254 ~a~~~ai~~yG~g~~~s--r~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~Liv 331 (430)
....+.+.++|....-. ..+++|++++++ ++++|+++++.|++|.+.|+++|+++|++||+++|+
T Consensus 118 ~~~~~~~~~~Gv~v~~vd~~d~e~l~~ai~~-------------~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIv 184 (431)
T PRK08248 118 NLFAHTLPKLGITVKFVDPSDPENFEAAITD-------------KTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIV 184 (431)
T ss_pred HHHHHHHHhCCEEEEEECCCCHHHHHHhcCC-------------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEE
Confidence 33445566667533211 125666666542 356888899999999999999999999999999999
Q ss_pred eccccccccCCCCCccceecCCCCCCccEEEeCccchhccc----cceeecCHHHH-----------------------H
Q psy2206 332 DEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM----GGYVAGSKSTI-----------------------D 384 (430)
Q Consensus 332 DEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~----GG~v~gs~~li-----------------------~ 384 (430)
|++++.+... ..+. ..+||++.|++|.+|.. ||+++.+.+.. +
T Consensus 185 D~t~a~~~~~---------~pl~-~gaDivv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (431)
T PRK08248 185 DNTFASPYLL---------RPIE-HGADIVVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTD 254 (431)
T ss_pred eCCCCccccC---------ChhH-cCCCEEEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhh
Confidence 9998754321 1111 35699999999999854 46666533210 0
Q ss_pred ---------HHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 385 ---------YIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 385 ---------~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
..+... ....+..++|..|+.++..|+.+
T Consensus 255 ~~~~~~~~~~~~~~~-~~~~G~~l~p~~a~l~~rgl~tl 292 (431)
T PRK08248 255 AVGEAAYITKARVQL-LRDLGAALSPFNSFLLLQGLETL 292 (431)
T ss_pred hhchhhHHHHHHHHH-HHhcCCCCCHHHHHHHhcCcCcH
Confidence 001001 12346789999999988887754
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.3e-08 Score=98.26 Aligned_cols=89 Identities=19% Similarity=0.254 Sum_probs=66.7
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhc-CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc--
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKY-KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y-~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-- 373 (430)
+++|++..+.+++|.+.+.+++.++++.. +++||+||+|.... .. ......... .+..|+++||||+||++|
T Consensus 148 ~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~--~~-~s~~~~~~~--~~~~iv~~S~SK~~~l~GlR 222 (354)
T PRK04635 148 AKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFC--PE-YSVADLLAS--YPNLVVLRTLSKAFALAGAR 222 (354)
T ss_pred CCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhc--cC-cchHHHHhh--CCCEEEEechHHHhhhhHHH
Confidence 44677779999999999999999998764 79999999996432 11 111111111 123588999999999999
Q ss_pred -ceeecCHHHHHHHHhcC
Q psy2206 374 -GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 374 -G~v~gs~~li~~l~~~~ 390 (430)
||+++++++++.+....
T Consensus 223 lG~~i~~~~~~~~l~~~~ 240 (354)
T PRK04635 223 CGFTLANEELIEILMRVI 240 (354)
T ss_pred HhhhhCCHHHHHHHHhhc
Confidence 99999999999887643
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=7e-08 Score=97.40 Aligned_cols=85 Identities=21% Similarity=0.272 Sum_probs=65.5
Q ss_pred EEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc---ce
Q psy2206 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG---GY 375 (430)
Q Consensus 299 lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G---G~ 375 (430)
+|++..+.+++|.+.+.++|.++++ +++++|+||+|..- .+ ......... .+..|+++||||+||++| ||
T Consensus 143 ~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~-~~---~~~~~~~~~--~~~vi~l~S~SK~~~l~GlRiG~ 215 (337)
T PRK03967 143 AVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEF-SG---KSLIGLIDE--YPNLILLRTFSKAFGLAGIRAGY 215 (337)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhh-cc---cchHHHHhh--CCCEEEEecchHhhcchhhhhee
Confidence 4556688999999999999999995 79999999999742 12 111111111 233689999999999999 99
Q ss_pred eecCHHHHHHHHhcC
Q psy2206 376 VAGSKSTIDYIRANS 390 (430)
Q Consensus 376 v~gs~~li~~l~~~~ 390 (430)
+++++++++.++...
T Consensus 216 iv~~~~~i~~~~~~~ 230 (337)
T PRK03967 216 AIANEEIIDALYRIK 230 (337)
T ss_pred eecCHHHHHHHHhhc
Confidence 999999999988754
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.6e-08 Score=100.97 Aligned_cols=88 Identities=22% Similarity=0.309 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|+++|.+ ++++|++..+.+++|.+.|+++|.++|++||++|++|++|++|... ..
T Consensus 134 ~~~l~~~i~~-------------~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~---------~~ 191 (404)
T PRK14012 134 LEKLEAAMRD-------------DTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVP---------ID 191 (404)
T ss_pred HHHHHHhcCC-------------CCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcc---------cC
Confidence 6777777643 3568999999999999999999999999999999999999876431 11
Q ss_pred CCCCCccEEEeCccchhcccc-ceeecCHHH
Q psy2206 353 IDPREVDILMGTYTKSFGSMG-GYVAGSKST 382 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~l 382 (430)
+....+|+++.|++|.+|..| |++..+++.
T Consensus 192 ~~~~~~D~~~~s~~K~~gp~g~G~l~~~~~~ 222 (404)
T PRK14012 192 LSKLKVDLMSFSAHKIYGPKGIGALYVRRKP 222 (404)
T ss_pred cccCCCCEEEEehhhccCCCceEEEEEecCC
Confidence 111246899999999888666 776666543
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.1e-07 Score=99.31 Aligned_cols=93 Identities=19% Similarity=0.216 Sum_probs=65.6
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC-CCccceec---CCC--CCCccEEEeCccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT-GRGVTEYF---GID--PREVDILMGTYTK 367 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~-GrG~~e~~---g~~--~~~~dIv~~TlSK 367 (430)
.++|++..+.+++|.+.+ +++|+++|++|+++||+||+|+.-+|... -..+.+.. ... ..+..+++.||||
T Consensus 200 ~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK 279 (496)
T PLN02376 200 VKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSK 279 (496)
T ss_pred eeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccc
Confidence 455666689999999998 77788899999999999999987666421 11222111 110 0123466899999
Q ss_pred hhcccc---ceeec-CHHHHHHHHhc
Q psy2206 368 SFGSMG---GYVAG-SKSTIDYIRAN 389 (430)
Q Consensus 368 a~G~~G---G~v~g-s~~li~~l~~~ 389 (430)
.||++| ||+++ ++.+++.++..
T Consensus 280 ~~glpGlRvG~li~~~~~l~~~~~~~ 305 (496)
T PLN02376 280 DMGLPGFRVGIVYSFNDSVVSCARKM 305 (496)
T ss_pred cCCCCcceEEEEEECCHHHHHHHHHH
Confidence 999999 99998 56677766553
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=8.3e-08 Score=96.80 Aligned_cols=82 Identities=22% Similarity=0.361 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
|+.+++.+++ ++++|.+|++-++.+++.|+++|.++|+++++.||||...+.+.+ +. +
T Consensus 137 ~~~~~~aI~~-------------nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl-------~r--P 194 (426)
T COG2873 137 PENFEAAIDE-------------NTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYL-------CR--P 194 (426)
T ss_pred HHHHHHHhCc-------------ccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCccee-------cc--h
Confidence 5777777654 678999999999999999999999999999999999999766543 21 2
Q ss_pred CCCCCccEEEeCccchhc----cccceee
Q psy2206 353 IDPREVDILMGTYTKSFG----SMGGYVA 377 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G----~~GG~v~ 377 (430)
++ ...|||+.|++|.+| ++||.|+
T Consensus 195 ~~-hGADIVvHS~TK~igGhGt~iGG~iV 222 (426)
T COG2873 195 IE-HGADIVVHSATKYIGGHGTAIGGVIV 222 (426)
T ss_pred hh-cCCCEEEEeecccccCCccccceEEE
Confidence 22 457999999999997 3567664
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=9.5e-08 Score=96.52 Aligned_cols=105 Identities=20% Similarity=0.211 Sum_probs=75.1
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc---
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG--- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G--- 373 (430)
+++|++..+.+++|.+.+.+++.+|+ +++++||+||+|..- .+. ........ .+..|+++||||+||++|
T Consensus 139 ~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f-~~~---~~~~~~~~--~~~vi~~~S~SK~~~l~GlRv 211 (335)
T PRK14808 139 GDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEF-HGE---SYVDLLKK--YENLAVIRTFSKAFSLAAQRI 211 (335)
T ss_pred CCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhh-cCC---chHHHHHh--CCCEEEEEechhhccCcccce
Confidence 35788899999999999999999998 579999999999742 121 11111111 134789999999999999
Q ss_pred ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 374 GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 374 G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
||+++++++++.+...... ++ .+.+...++.++++
T Consensus 212 G~~v~~~~~~~~l~~~~~~--~~--~~~~~q~a~~~~l~ 246 (335)
T PRK14808 212 GYVVSSEKFIDAYNRVRLP--FN--VSYVSQMFAKVALD 246 (335)
T ss_pred EEEEeCHHHHHHHHHhcCC--CC--CCHHHHHHHHHHHh
Confidence 9999999999999775422 22 23333344455554
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.5e-08 Score=102.81 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=42.4
Q ss_pred ceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCcccccc
Q psy2206 95 STCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASM 140 (430)
Q Consensus 95 ~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~~ 140 (430)
++++||+|||||||+ .||.+++|+++++++||+|+++||...|+.
T Consensus 45 ~~~~~~~sn~ylgl~-~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~ 89 (402)
T TIGR01821 45 KDVTVWCSNDYLGMG-QHPEVLQAMHETLDKYGAGAGGTRNISGTN 89 (402)
T ss_pred eeEEEeEccCcCCCC-CCHHHHHHHHHHHHHcCCCCcchhhhhCCc
Confidence 589999999999999 699999999999999999999999988866
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.2e-07 Score=95.11 Aligned_cols=93 Identities=16% Similarity=0.287 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++||+++.+. .+.++++.+..++.|.+.|+++|.++|++||++|++|+||+..+ .... .+
T Consensus 138 ~~~le~ai~~~------------t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~-----~~~~-~~- 198 (363)
T TIGR01437 138 AEQLEAAITEK------------TAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDL-----QKYY-RL- 198 (363)
T ss_pred HHHHHHhcChh------------ceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCch-----HHHH-Hc-
Confidence 78888887541 23355566666778999999999999999999999999997321 1000 11
Q ss_pred CCCCCccEEEeCccchhc-cccceeecCHHHHHHHHh
Q psy2206 353 IDPREVDILMGTYTKSFG-SMGGYVAGSKSTIDYIRA 388 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G-~~GG~v~gs~~li~~l~~ 388 (430)
..|+++.|++|.++ ..+|++++++++++.++.
T Consensus 199 ----g~D~~~~S~~K~l~gp~~G~l~~~~~~i~~~~~ 231 (363)
T TIGR01437 199 ----GADLVIYSGAKAIEGPTSGLVLGKKKYIEWVKL 231 (363)
T ss_pred ----CCCEEEEeCCcccCCCceEEEEEcHHHHHHHHh
Confidence 35899999999884 458999999999988754
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.4e-08 Score=84.53 Aligned_cols=77 Identities=30% Similarity=0.374 Sum_probs=61.6
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-c
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-G 374 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G 374 (430)
++.+|+++.++++.|...|+++|.++|+++|+++++||+|+.+.....+ +......+|+++.|++|.||.+| |
T Consensus 92 ~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~------~~~~~~~~d~~~~s~~K~~~~~~~G 165 (170)
T cd01494 92 NVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPG------VLIPEGGADVVTFSLHKNLGGEGGG 165 (170)
T ss_pred ceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccc------cccccccCCEEEEEcccccCCCceE
Confidence 5678999999999999999999999999999999999999876553211 11222357999999999998765 7
Q ss_pred eeec
Q psy2206 375 YVAG 378 (430)
Q Consensus 375 ~v~g 378 (430)
+++.
T Consensus 166 ~l~~ 169 (170)
T cd01494 166 VVIV 169 (170)
T ss_pred EEEe
Confidence 7764
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >KOG1405|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-07 Score=95.05 Aligned_cols=130 Identities=25% Similarity=0.295 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCccc--C--HHHHHHHHHhcCcEEEEeccccccccCCCCCccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIV--R--LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~--~--L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~ 348 (430)
.+++|.+|.+... +....+.||+|+|.|..||-. | +..|++++++|++.+||||++. | -|.+|.-++
T Consensus 255 l~~Ve~li~~~~~-------k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQT-G-gGaTGk~Wa 325 (484)
T KOG1405|consen 255 LAEVEDLIVKYRK-------KKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQT-G-GGATGKFWA 325 (484)
T ss_pred HHHHHHHHHHHhh-------cCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeec-C-CCccCceee
Confidence 3778888877531 112467899999999999754 2 9999999999999999999985 5 377887666
Q ss_pred -eecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCC-cHHHHHHHHHHHHHHHccCCc
Q psy2206 349 -EYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSM-PPPVAMQILTSMRIIMGLENG 420 (430)
Q Consensus 349 -e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~-~P~~~aaalaaL~~l~~~~~~ 420 (430)
|+|+++ ...|+| ||||-| ..|||.... ++ +....--+|.|-+ -|.-+....+.+++|++++-.
T Consensus 326 Hehw~l~-~PpD~v--TFSKK~-q~gGffh~~-~f----rpn~pYrifNTWmGdP~k~lll~~vv~~I~~~~Ll 390 (484)
T KOG1405|consen 326 HEHWNLD-SPPDVV--TFSKKF-QTGGFFHDE-EF----RPNEPYRIFNTWMGDPSKNLLLEEVVQEIKREDLL 390 (484)
T ss_pred ehhcCCC-CCccce--ehhhhh-hcCccccCc-cc----CCCchHHHhhhhcCChHHHHHHHHHHHHHhHHHHH
Confidence 899987 467888 999998 356677543 22 2221111233223 455555556777888776543
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=9e-08 Score=98.58 Aligned_cols=93 Identities=17% Similarity=0.229 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC--CCcc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT--GRGV 347 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~--GrG~ 347 (430)
+++|++.+++. +.+++++++.++.+++|.+.+ +.+|+++|++||+++|.||+|..-.++.. -..+
T Consensus 159 ~~~l~~~~~~~----------~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~ 228 (396)
T PRK09257 159 FDAMLADLSQA----------PAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGL 228 (396)
T ss_pred HHHHHHHHHhC----------CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHH
Confidence 56777776642 113578888999999999987 88889999999999999999975333200 0111
Q ss_pred ceecCCCCCCccEEEeCccchhcccc---ceee
Q psy2206 348 TEYFGIDPREVDILMGTYTKSFGSMG---GYVA 377 (430)
Q Consensus 348 ~e~~g~~~~~~dIv~~TlSKa~G~~G---G~v~ 377 (430)
....+. .+..|+++||||+|+++| ||++
T Consensus 229 ~~~~~~--~~~vi~i~SfSK~~~~~GlRiG~~~ 259 (396)
T PRK09257 229 RAFAAA--GLELLVASSFSKNFGLYGERVGALS 259 (396)
T ss_pred HHHHhc--CCcEEEEEEcCCcCccccccceeEE
Confidence 111111 234689999999999988 9986
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.1e-07 Score=97.05 Aligned_cols=119 Identities=19% Similarity=0.205 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+++ ++++|++..+.+++|.+.|+++|.++|++||+++++|++|+.|.. ...
T Consensus 126 ~~~l~~~i~~-------------~~~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~---------~~~ 183 (379)
T TIGR03402 126 LEELRAAITD-------------DTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKI---------PID 183 (379)
T ss_pred HHHHHHhcCC-------------CcEEEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECccccccc---------ccC
Confidence 5777776643 356888899999999999999999999999999999999986532 112
Q ss_pred CCCCCccEEEeCccchhcccc-ceeecCHHHHHHHHhcC------CcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 353 IDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIRANS------HVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~~~~------~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
+....+|+++.|.+|.+|..| |++..+++.. +.... ... ...+.+.+...+..++++.+.+
T Consensus 184 ~~~~~~D~~~~s~~K~~gp~G~g~l~v~~~~~--~~p~~~g~~~~~~~-~~gt~~~~~~~~l~~al~~~~~ 251 (379)
T TIGR03402 184 LKEMNIDMLSLSGHKLHGPKGVGALYIRKGTR--FRPLLRGGHQERGR-RAGTENVPGIVGLGKAAELATE 251 (379)
T ss_pred cccCCCCEEEEcHHHcCCCCceEEEEECCCCC--CCCcccCCccCCCc-CCCCccHHHHHHHHHHHHHHHH
Confidence 222357899899999767666 7766665431 11100 011 1233455556666777777643
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.8e-07 Score=95.64 Aligned_cols=75 Identities=23% Similarity=0.231 Sum_probs=59.3
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-ce
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-GY 375 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G~ 375 (430)
+++|++..+.+++|.+.|+++|.++|++||+++++|++|+.|.+- ..+....+|+++.|++|.+|.+| |+
T Consensus 141 t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~---------~~~~~~~~D~~~~s~~K~~gp~G~g~ 211 (382)
T TIGR03403 141 TALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIP---------VDVQKAGVDFLSFSAHKFHGPKGVGG 211 (382)
T ss_pred CeEEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCc---------cCccccCCCEEEEcchhhCCCCceEE
Confidence 568888999999999999999999999999999999999865321 12222357899999999888776 66
Q ss_pred eecCH
Q psy2206 376 VAGSK 380 (430)
Q Consensus 376 v~gs~ 380 (430)
+..++
T Consensus 212 l~vr~ 216 (382)
T TIGR03403 212 LYIRK 216 (382)
T ss_pred EEECC
Confidence 65443
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.6e-07 Score=96.28 Aligned_cols=88 Identities=22% Similarity=0.245 Sum_probs=65.3
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHh--cCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNK--YKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~--y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G- 373 (430)
+++|++.++.+++|.+.+.++|.++++. ++++||+||+|.. |+. +.......+. .+..|+++||||+||++|
T Consensus 166 ~~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~--f~~-~~s~~~~~~~--~~~vi~~~SfSK~~g~~Gl 240 (370)
T PRK09105 166 AGLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIH--FSD-APSVVDLVAQ--RKDLIVLRTFSKLYGMAGM 240 (370)
T ss_pred CCEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHH--hcc-CcchHHHHhh--CCCEEEEecccHhhcCCcc
Confidence 4466677789999999998888887754 4899999999953 322 1111221111 233688899999999999
Q ss_pred --ceeecCHHHHHHHHhc
Q psy2206 374 --GYVAGSKSTIDYIRAN 389 (430)
Q Consensus 374 --G~v~gs~~li~~l~~~ 389 (430)
||+++++++++.+...
T Consensus 241 RiG~~v~~~~~i~~l~~~ 258 (370)
T PRK09105 241 RLGLAAARPDLLAKLARF 258 (370)
T ss_pred ceeeeecCHHHHHHHHhc
Confidence 9999999999988764
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=98.59 E-value=3.8e-07 Score=98.14 Aligned_cols=111 Identities=18% Similarity=0.224 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCC--cc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR--GV 347 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr--G~ 347 (430)
+++|++.+++.... ..++++|++-.+.+++|.+.+ +.+|+++|++||++||.||+|..-++..... .+
T Consensus 255 ~~~Le~~l~~~~~~-------~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~ 327 (534)
T PLN02231 255 ISELKKQLEDARSK-------GITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSF 327 (534)
T ss_pred HHHHHHHHHHHhhc-------CCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccH
Confidence 67888888653211 013445555678999999986 8888999999999999999998776632111 11
Q ss_pred cee---cCCCCCC-ccEEEeCccchh-cccc---ceeec---CHHHHHHHHhcC
Q psy2206 348 TEY---FGIDPRE-VDILMGTYTKSF-GSMG---GYVAG---SKSTIDYIRANS 390 (430)
Q Consensus 348 ~e~---~g~~~~~-~dIv~~TlSKa~-G~~G---G~v~g---s~~li~~l~~~~ 390 (430)
... .+....+ ..|.++||||.+ |++| ||+.+ ++++++.+....
T Consensus 328 ~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l~~~l~k~~ 381 (534)
T PLN02231 328 KKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDVREQIYKVA 381 (534)
T ss_pred HHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHHHHHHHHHH
Confidence 111 1211111 358899999986 7777 99875 789998887643
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.7e-08 Score=101.04 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=51.9
Q ss_pred CcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCcccccc
Q psy2206 64 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASM 140 (430)
Q Consensus 64 rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~~ 140 (430)
+++.+.+|+++.+.-. ..+..+++|||+|||||||+ +||++++++++++++||+++++||...|+.
T Consensus 24 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~sn~ylgl~-~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~ 89 (406)
T PRK13393 24 ADLERQAGAFPRATHH----------GPDGPREVTVWCSNDYLGMG-QHPAVLAAMHEALDTCGAGAGGTRNISGTN 89 (406)
T ss_pred eeccccCCCcceeEEe----------ccCCCccEEEeecccccCCC-CCHHHHHHHHHHHHHcCCCCcccccccCCh
Confidence 7787777765432100 00123589999999999999 699999999999999999999999988865
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.9e-07 Score=94.14 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHH-hcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKN-KYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~-~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
+++|++++++.. ..+.++|++.++.+++|.+.+.+++.++.+ .++++||+||+|..-. + .......
T Consensus 154 ~~~l~~~~~~~~---------~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~-~---~~~~~~~ 220 (374)
T PRK02610 154 LAAAQSAIEQTQ---------NPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFS-Q---TTLVGEL 220 (374)
T ss_pred HHHHHHHHHhhc---------CCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccC-c---cchHHHH
Confidence 577777775410 013445555578999999998666666553 2489999999996422 1 1111111
Q ss_pred CCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcC
Q psy2206 352 GIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~ 390 (430)
......|+++||||+||++| ||+++++++++.+....
T Consensus 221 --~~~~~~ivi~SfSK~~g~~GlRiG~~v~~~~l~~~l~~~~ 260 (374)
T PRK02610 221 --AQHPNWVILRTFSKAFRLAAHRVGYAIGHPELIAVLEKVR 260 (374)
T ss_pred --hcCCCEEEEEecchhccCcccceeeeecCHHHHHHHHHhc
Confidence 11123578999999999999 99999999999988754
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.7e-07 Score=93.29 Aligned_cols=89 Identities=18% Similarity=0.253 Sum_probs=67.3
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc---
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG--- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G--- 373 (430)
+++|++..+.+++|.+.+.++|.++|++ +.++|+||+|+.-+.+. -..+.. ... +..|+++||||.+|++|
T Consensus 140 ~~~i~l~np~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~~~~~~~-~~~l~~---~~~-~~~i~i~S~SK~~~l~GlRi 213 (349)
T PRK07908 140 ADLVVIGNPTNPTSVLHPAEQLLALRRP-GRILVVDEAFADAVPGE-PESLAG---DDL-PGVLVLRSLTKTWSLAGLRV 213 (349)
T ss_pred CCEEEEcCCCCCCCCCcCHHHHHHHHhc-CCEEEEECcchhhccCC-cccccc---ccC-CCEEEEeecccccCCcccee
Confidence 3477778899999999999999999975 77899999997533221 111111 121 23688999999999888
Q ss_pred ceeecCHHHHHHHHhcCC
Q psy2206 374 GYVAGSKSTIDYIRANSH 391 (430)
Q Consensus 374 G~v~gs~~li~~l~~~~~ 391 (430)
||+++++++++.++....
T Consensus 214 G~~~~~~~~~~~~~~~~~ 231 (349)
T PRK07908 214 GYALGAPDVLARLTRGRA 231 (349)
T ss_pred eeeecCHHHHHHHHhcCC
Confidence 999999999999887543
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.7e-07 Score=95.05 Aligned_cols=95 Identities=21% Similarity=0.280 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHh------cCcEEEEeccccccccCCC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNK------YKAYLYVDEAHSIGALGPT 343 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~------y~~~LivDEAh~~G~lG~~ 343 (430)
+++|++++.+ ++++|++..+.+++|.+.| +.+|+++|++ ||+++|+||+|..-.++.
T Consensus 158 ~~~l~~~~~~-------------~~~~v~~~~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~- 223 (394)
T PRK06836 158 LDALEAAITP-------------KTKAVIINSPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDG- 223 (394)
T ss_pred HHHHHhhcCc-------------CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCC-
Confidence 5677776643 2445666678999999987 7777777888 899999999997544432
Q ss_pred CCccceecCCCCCCccEEEeCccchhcccc---ceeecCHHHHH
Q psy2206 344 GRGVTEYFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTID 384 (430)
Q Consensus 344 GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~ 384 (430)
......... .+.+|+++||||.||++| ||+++++++.+
T Consensus 224 -~~~~~~~~~--~~~~i~~~S~SK~~~~pGlRiG~~~~~~~~~~ 264 (394)
T PRK06836 224 -AEVPYIFKY--YDNSIVVYSFSKSLSLPGERIGYIAVNPEMED 264 (394)
T ss_pred -CCCCChHHc--cCcEEEEecchhhccCcceeeEEEecCHHHhh
Confidence 111111111 134799999999999888 99999887754
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.9e-07 Score=95.65 Aligned_cols=136 Identities=15% Similarity=0.045 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCC-cccC---HHHHHHHHHhcCcEEEEecccccc-c-cCC----
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDG-SIVR---LPEIVRLKNKYKAYLYVDEAHSIG-A-LGP---- 342 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G-~i~~---L~~I~~La~~y~~~LivDEAh~~G-~-lG~---- 342 (430)
+++||+++.+. .+.++++|+++.+.+++| .+.+ |++|.++|++||++||+|++|..+ . |+.
T Consensus 163 ~e~Le~~i~~~---------~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~ 233 (460)
T PRK13238 163 LEKLEALIEEV---------GAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREP 233 (460)
T ss_pred HHHHHHHHhhc---------CCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccc
Confidence 67788887652 123578899999999987 5554 789999999999999999988532 2 221
Q ss_pred --CCCccceecCCCCCCccEEEeCccchh-ccccceeecC-HHHHHHHHhcC---CcccccCCCcHHHHHHHHHHHHHHH
Q psy2206 343 --TGRGVTEYFGIDPREVDILMGTYTKSF-GSMGGYVAGS-KSTIDYIRANS---HVRSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 343 --~GrG~~e~~g~~~~~~dIv~~TlSKa~-G~~GG~v~gs-~~li~~l~~~~---~~~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
.+..+.+..-....-.|++..|..|.. +..||+++++ +++++.++... .+++..+++++...+|+..+|+-..
T Consensus 234 g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~ 313 (460)
T PRK13238 234 GYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGM 313 (460)
T ss_pred cccCCCHHHHhhhhcccCcEEEEecccCCCCcceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhh
Confidence 111111110000012367777777754 4458999887 68888887653 2343334444443444444554433
Q ss_pred cc
Q psy2206 416 GL 417 (430)
Q Consensus 416 ~~ 417 (430)
++
T Consensus 314 ~~ 315 (460)
T PRK13238 314 DE 315 (460)
T ss_pred Ch
Confidence 33
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-07 Score=99.32 Aligned_cols=101 Identities=18% Similarity=0.309 Sum_probs=72.6
Q ss_pred HHHHHHHhCCCCCC---CCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEe
Q psy2206 256 SKESVKQSGCALCS---PSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVD 332 (430)
Q Consensus 256 ~~~ai~~yG~g~~~---sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivD 332 (430)
..+.+.++|....- +..+++|+++|++ ++++|++|.+.+++|.+.|+++|.++|+++|+++++|
T Consensus 125 ~~~~l~~~Gi~v~~vd~~~d~e~l~~~l~~-------------~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD 191 (437)
T PRK05613 125 FLVTLNRLGIEVTFVENPDDPESWQAAVQP-------------NTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVD 191 (437)
T ss_pred HHHHHHhcCeEEEEECCCCCHHHHHHhCCc-------------cCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEE
Confidence 34456667754321 1125666666543 3567889999999999999999999999999999999
Q ss_pred ccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----ccceeecC
Q psy2206 333 EAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS----MGGYVAGS 379 (430)
Q Consensus 333 EAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~----~GG~v~gs 379 (430)
.+|+.|.+- .++. ..+|+++.|++|.++. .||+++.+
T Consensus 192 ~t~a~g~~~---------~p~~-~GaDivv~S~~K~l~G~gd~~gG~vv~~ 232 (437)
T PRK05613 192 NTIATAALV---------RPLE-LGADVVVASLTKFYTGNGSGLGGVLIDG 232 (437)
T ss_pred CCCcccccc---------ChHH-hCCCEEEeeccceecCCCcceeEEEEec
Confidence 999776431 1111 2469999999999974 36877753
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.48 E-value=8.2e-07 Score=101.52 Aligned_cols=92 Identities=21% Similarity=0.281 Sum_probs=64.1
Q ss_pred EEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCc---c---ceecC-CCCCCccEEEeCccc
Q psy2206 298 ILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRG---V---TEYFG-IDPREVDILMGTYTK 367 (430)
Q Consensus 298 ~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG---~---~e~~g-~~~~~~dIv~~TlSK 367 (430)
.++++.+-+||+|.+.+ +.+|+++|++||++||+||+|+.-.|...... + ...+. ..+....|+++||||
T Consensus 831 ~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSK 910 (1082)
T PLN02672 831 WVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLST 910 (1082)
T ss_pred EEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHH
Confidence 34444443599999887 78888889999999999999985556422110 1 11111 001124689999999
Q ss_pred hhcccc---ceeecC-HHHHHHHHhc
Q psy2206 368 SFGSMG---GYVAGS-KSTIDYIRAN 389 (430)
Q Consensus 368 a~G~~G---G~v~gs-~~li~~l~~~ 389 (430)
.++++| ||++++ +++++.++..
T Consensus 911 kf~lpGLRIGylIap~~eLi~~l~~~ 936 (1082)
T PLN02672 911 ELLSGGHEFGFLALNDSVLIDAFHSA 936 (1082)
T ss_pred hhccHHHHheeEEeCCHHHHHHHHHh
Confidence 999999 999986 5589888763
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.47 E-value=6.5e-07 Score=93.23 Aligned_cols=114 Identities=20% Similarity=0.261 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhCCCCC-------CCCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHH
Q psy2206 251 LCTERSKESVKQSGCALC-------SPSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKN 323 (430)
Q Consensus 251 ~v~~a~~~ai~~yG~g~~-------~sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~ 323 (430)
...-...+..++.|.-.- +.-..+++++++.+ ++++|.+..+.+.+|.+.|+++|+++|+
T Consensus 123 sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~-------------~Tklvais~vSn~tG~~~pv~~I~~la~ 189 (405)
T COG0520 123 SNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITP-------------KTKLVALSHVSNVTGTVNPVKEIAELAH 189 (405)
T ss_pred hhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcCC-------------CceEEEEECccccccccchHHHHHHHHH
Confidence 345566777777675211 11114667765432 6789999999999999999999999999
Q ss_pred hcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccc-hhcccc-ceeecCHHHHHHH
Q psy2206 324 KYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTK-SFGSMG-GYVAGSKSTIDYI 386 (430)
Q Consensus 324 ~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSK-a~G~~G-G~v~gs~~li~~l 386 (430)
+||++++||=||++|.+- ..+...++|+++.|-.| -+|..| |++.+++++.+.+
T Consensus 190 ~~ga~v~VDaaq~~~h~~---------idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l 245 (405)
T COG0520 190 EHGALVLVDAAQAAGHLP---------IDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEEL 245 (405)
T ss_pred HcCCEEEEECccccCccC---------CCchhcCCCEEEEcccccccCCCceEEEEEchHHHhhc
Confidence 999999999999877431 22333467999999999 556657 9999999999877
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.7e-07 Score=95.07 Aligned_cols=98 Identities=16% Similarity=0.250 Sum_probs=71.9
Q ss_pred HHHHHHhCCCCC--CCCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEecc
Q psy2206 257 KESVKQSGCALC--SPSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEA 334 (430)
Q Consensus 257 ~~ai~~yG~g~~--~sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEA 334 (430)
...+.++|.... -...+++|+++|.+ ++++|+++.+.++.|.+.|+++|.++|++||+++|+|.+
T Consensus 121 ~~~l~~~Gi~v~~vd~~d~~~l~~~i~~-------------~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t 187 (433)
T PRK08134 121 HYTLRRFGIETTFVKPGDIDGWRAAIRP-------------NTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDST 187 (433)
T ss_pred HHHHhhCCeEEEEECCCCHHHHHHhcCC-------------CCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECC
Confidence 334556675322 11236677776653 467899999999999999999999999999999999999
Q ss_pred ccccccCCCCCccceecCCCCCCccEEEeCccchhcccc----ceee
Q psy2206 335 HSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG----GYVA 377 (430)
Q Consensus 335 h~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G----G~v~ 377 (430)
|+.+.+.. .+. ..+|+++.|.+|.+|..| |+++
T Consensus 188 ~a~~~~~~---------pl~-~GaD~vv~S~tK~l~g~g~~~gG~v~ 224 (433)
T PRK08134 188 FTTPYLLR---------PFE-HGADLVYHSATKFLGGHGTAIGGVLV 224 (433)
T ss_pred CcccccCC---------chh-cCCCEEEeccccccCCCCCceEEEEE
Confidence 98775421 121 256999999999997544 6554
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-06 Score=92.52 Aligned_cols=124 Identities=16% Similarity=0.207 Sum_probs=90.2
Q ss_pred HHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHh
Q psy2206 254 ERSKESVKQSGCALCSPSA------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNK 324 (430)
Q Consensus 254 ~a~~~ai~~yG~g~~~sr~------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~ 324 (430)
..+..+++.+|...-.-.. +++||+.++... -+.++++.+..+++|.+.+ -++|+++|++
T Consensus 190 ~~~~~~~~~~g~~~~~vp~d~~G~~~e~le~~~~~~~-----------~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~ 258 (459)
T COG1167 190 PGALQALEALGARVIPVPVDEDGIDPEALEEALAQWK-----------PKAVYVTPTFQNPTGVTMSLERRKALLALAEK 258 (459)
T ss_pred HHHHHHHHHcCCcEEecCCCCCCCCHHHHHHHHhhcC-----------CcEEEECCCCCCCCCCccCHHHHHHHHHHHHH
Confidence 3455566667764332222 899999988631 2567888888999999888 5789999999
Q ss_pred cCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhc--cccceeecCHHHHHHHHhcC
Q psy2206 325 YKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG--SMGGYVAGSKSTIDYIRANS 390 (430)
Q Consensus 325 y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G--~~GG~v~gs~~li~~l~~~~ 390 (430)
||+++|=||.|+...+.. .-.....+.+..+..|.++||||++. .=-||+++++++++.+....
T Consensus 259 ~~~~IIEDD~y~el~~~~--~p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~~~~~~~~~~k 324 (459)
T COG1167 259 YDVLIIEDDYYGELRYDG--PPPPPLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPPELIEKLLRLK 324 (459)
T ss_pred cCCeEEeeCcchhhhcCC--CCCCChHhhCCCCCEEEEeeehhhcccccceeeeeCCHHHHHHHHHHH
Confidence 999999999998765542 22211223333467899999999994 23399999999999888754
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.6e-07 Score=89.78 Aligned_cols=99 Identities=19% Similarity=0.224 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+... ++++|++..+.+++|.+.+.+++.++++..++++|+||+|.. +.. ......
T Consensus 142 ~~~l~~~~~~~------------~~~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~--~~~--~~~~~~-- 203 (356)
T PRK04870 142 LPAMLAAIAEH------------RPALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQP--FAG--DSWLPR-- 203 (356)
T ss_pred HHHHHHHhhcC------------CCCEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchh--hcC--cchHHH--
Confidence 56777776531 234555567899999999988888888777899999999963 221 111111
Q ss_pred CCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcC
Q psy2206 353 IDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~ 390 (430)
+...+..|+++|||| +|++| ||+++++++++.++...
T Consensus 204 ~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i~~~~~~~ 243 (356)
T PRK04870 204 LARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIAELDKVR 243 (356)
T ss_pred HhhCCCEEEEecchh-hhhHHHhhhhhhCCHHHHHHHHHcc
Confidence 111234699999999 89888 99999999999888644
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.2e-07 Score=90.94 Aligned_cols=106 Identities=16% Similarity=0.124 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHh-----cCcEEEEeccccccccCCCC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNK-----YKAYLYVDEAHSIGALGPTG 344 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~-----y~~~LivDEAh~~G~lG~~G 344 (430)
+++|++.++... ...+.++++.++.+|+|.+.+ +++|+++|++ |+++||+||+|..-++....
T Consensus 132 ~~~l~~~~~~~~---------~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~~~~~~ 202 (388)
T PRK08637 132 TDALKEALQAAY---------NKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLFYEDSY 202 (388)
T ss_pred HHHHHHHHHhhc---------cCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcccCCcc
Confidence 577777776210 113567888999999998887 6677776664 99999999999755553211
Q ss_pred C-cccee-cCCCCCCc-cEEEeCccchhcccc---ceeec------CHHHHHHHHh
Q psy2206 345 R-GVTEY-FGIDPREV-DILMGTYTKSFGSMG---GYVAG------SKSTIDYIRA 388 (430)
Q Consensus 345 r-G~~e~-~g~~~~~~-dIv~~TlSKa~G~~G---G~v~g------s~~li~~l~~ 388 (430)
. .+... .+.. ..+ .|.++||||.++++| ||++. ++++++.+..
T Consensus 203 ~~~~~~~~~~~~-~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~ 257 (388)
T PRK08637 203 KESLFAALANLH-SNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEK 257 (388)
T ss_pred chhhHHHhhccc-ccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHH
Confidence 1 11111 1221 122 345579999999999 99874 4688877754
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.5e-07 Score=95.45 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=42.6
Q ss_pred cceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCcccccc
Q psy2206 94 ESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASM 140 (430)
Q Consensus 94 ~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~~ 140 (430)
.+++|||+|||||||+ .||.+++++.+++++||.+++|||...|+.
T Consensus 45 ~~~~~~~~s~dylgl~-~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~ 90 (407)
T PRK09064 45 EREVTVWCSNDYLGMG-QHPKVIEAMIEALDRCGAGAGGTRNISGTN 90 (407)
T ss_pred CceEEEEECCCCcCCC-CCHHHHHHHHHHHHHcCCCCCCcCcCccCH
Confidence 4689999999999999 599999999999999999999999988755
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.6e-06 Score=86.97 Aligned_cols=107 Identities=18% Similarity=0.171 Sum_probs=69.3
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCcc--chhcc-cc
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYT--KSFGS-MG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlS--Ka~G~-~G 373 (430)
+++|++.. +.|.+.|+++|+++|++||++||+|++|+.|.... +. ..+. ..|+.+.||+ |.++. .|
T Consensus 107 ~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~-~~----~~~~---~~d~~~~S~~~~K~~~~~~g 175 (352)
T cd00616 107 TKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYK-GR----KVGT---FGDAGAFSFHPTKNLTTGEG 175 (352)
T ss_pred CeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeEC-CE----Eccc---CcceeEEcCCCCCCCcccCc
Confidence 34455443 57999999999999999999999999999775421 11 1121 1267777877 99953 56
Q ss_pred ceeecC-HHHHHHHHhc---CCc----------ccccCCCcHHHHHHHHHHHHHH
Q psy2206 374 GYVAGS-KSTIDYIRAN---SHV----------RSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 374 G~v~gs-~~li~~l~~~---~~~----------~~~s~s~~P~~~aaalaaL~~l 414 (430)
|+++.+ +++++.++.. ... ..+...+++..++.++..++.+
T Consensus 176 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~ 230 (352)
T cd00616 176 GAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKL 230 (352)
T ss_pred eEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhh
Confidence 777664 6777655431 111 1123456777777766655544
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.7e-07 Score=93.07 Aligned_cols=86 Identities=19% Similarity=0.354 Sum_probs=62.8
Q ss_pred eeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC-------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccC
Q psy2206 235 LNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA-------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFS 307 (430)
Q Consensus 235 lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~-------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~s 307 (430)
|||+|||||||++|| ++++++++++++||+++|+||. ..+||+.+.+.. +. ...++++
T Consensus 1 ~~f~s~dyLgl~~~~-~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~--g~-------e~al~~~----- 65 (392)
T PLN03227 1 LNFATHDFLSTSSSP-TLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFL--GT-------ESAILYS----- 65 (392)
T ss_pred CCCcCcCccCCCCCH-HHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHh--CC-------CcEEEec-----
Confidence 699999999999986 8999999999999999999998 378999887742 11 1334443
Q ss_pred CCCcccCHHHHHHHHHhcCcEEEEecccc
Q psy2206 308 MDGSIVRLPEIVRLKNKYKAYLYVDEAHS 336 (430)
Q Consensus 308 m~G~i~~L~~I~~La~~y~~~LivDEAh~ 336 (430)
.|..+.+..|..+++.-+.+|+-|.+|.
T Consensus 66 -sG~~a~~~~i~~l~~~GD~Vl~~~~~h~ 93 (392)
T PLN03227 66 -DGASTTSSTVAAFAKRGDLLVVDRGVNE 93 (392)
T ss_pred -CcHHHHHHHHHHhCCCCCEEEEeccccH
Confidence 3444555666667766665555555664
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=98.39 E-value=7.6e-07 Score=89.14 Aligned_cols=95 Identities=31% Similarity=0.256 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCC-CCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGP-TGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~-~GrG~~e~~ 351 (430)
+++|++++.+....+ .++++|++..+.+++|.+.|+++|.++|++||++|++|+||+.+++.- ...+. ..
T Consensus 132 ~~~l~~~i~~~~~~~-------~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~--~~ 202 (345)
T cd06450 132 PEALEAAIDEDKAEG-------LNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHL--DF 202 (345)
T ss_pred HHHHHHHHHHHHHCC-------CCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEechhhHHHhhChhhHHH--hc
Confidence 788998887632111 134566667778889999999999999999999999999998876531 11111 11
Q ss_pred CCCCCCccEEEeCccchhcccc--ceeec
Q psy2206 352 GIDPREVDILMGTYTKSFGSMG--GYVAG 378 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~~G--G~v~g 378 (430)
++ ..+|.++.|++|.++.+. |++..
T Consensus 203 ~~--~~~d~~~~s~~K~l~~p~g~g~~~~ 229 (345)
T cd06450 203 GI--ERVDSISVDPHKYGLVPLGCSAVLV 229 (345)
T ss_pred Cc--cccCEEEEchhHhhCCCcchHHHHH
Confidence 12 257888899999876543 55533
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.5e-06 Score=88.71 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++||++|.+.. +..+.+|++.+-+...|...|+++|.++|++||++|++|+||+.+.. .-....+ .+
T Consensus 191 ~e~Le~aIt~~~---------~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~--~~~~~~~-~g 258 (444)
T TIGR03531 191 VEDIERAIEEIG---------PDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSN--KYMELIN-KA 258 (444)
T ss_pred HHHHHHHHHhcc---------CCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcCh--hhhhhhh-cc
Confidence 788999887520 12345555555444456888999999999999999999999985431 0000000 12
Q ss_pred CCCCCccEEEeCccchhcccc--ceeec-CHHHHHHHHhc
Q psy2206 353 IDPREVDILMGTYTKSFGSMG--GYVAG-SKSTIDYIRAN 389 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G--G~v~g-s~~li~~l~~~ 389 (430)
.....+|+++.+++|.+.++| |+++. ++++++.++..
T Consensus 259 ~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~~ 298 (444)
T TIGR03531 259 IKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEISKS 298 (444)
T ss_pred ccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHHHh
Confidence 211136899999999998743 55545 78888888763
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.3e-07 Score=96.54 Aligned_cols=59 Identities=25% Similarity=0.445 Sum_probs=53.3
Q ss_pred cccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCcccccc
Q psy2206 65 PVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASM 140 (430)
Q Consensus 65 pi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~~ 140 (430)
.+.+.+|++|.+.+| ++|||+|+|||||. .+|.+++++.+++++||+|+||||..+|+.
T Consensus 95 ~~~~~~G~~i~~~G~----------------~~id~~s~~~lgl~-~~~~i~ea~~~al~~~G~g~~g~r~~yg~~ 153 (481)
T PLN02822 95 VLESAAGPHTIINGK----------------DVVNFASANYLGLI-GNEKIKESCTSALEKYGVGSCGPRGFYGTI 153 (481)
T ss_pred ceecCCCCeEEECCc----------------eEEEeECCCcCCCC-CCHHHHHHHHHHHHHhCCCCcccCccccCH
Confidence 567888999887554 89999999999999 599999999999999999999999988876
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.1e-06 Score=90.94 Aligned_cols=101 Identities=19% Similarity=0.270 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCc--cCCCC--cccCHHHHHHHHHhcCcEEEEeccccccccCCCC-Ccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGI--FSMDG--SIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTG-RGV 347 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v--~sm~G--~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~G-rG~ 347 (430)
+++++++|.+ ++++|+++.+ |+|+| ...|+++|+++|++||+++|+|.++ |++++.+ .|+
T Consensus 206 ~~dle~aI~~-------------~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gs--G~l~~~~~~gl 270 (464)
T PRK04311 206 LRDYEQAINE-------------NTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGS--GSLVDLSQYGL 270 (464)
T ss_pred HHHHHHhcCc-------------cCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCC--cccccchhccC
Confidence 6788877754 2445555555 44667 5789999999999999999999964 4454322 111
Q ss_pred ceecCC---CCCCccEEEeCccchhc-cccceeecCHHHHHHHHh
Q psy2206 348 TEYFGI---DPREVDILMGTYTKSFG-SMGGYVAGSKSTIDYIRA 388 (430)
Q Consensus 348 ~e~~g~---~~~~~dIv~~TlSKa~G-~~GG~v~gs~~li~~l~~ 388 (430)
.....+ ....+|+++.|.+|.+| ..+|++++++++++.++.
T Consensus 271 ~~~p~~~~~l~~GaDiv~fSg~K~LgGp~~G~i~g~~~li~~l~~ 315 (464)
T PRK04311 271 PDEPTVQELLAAGVDLVTFSGDKLLGGPQAGIIVGKKELIARLKK 315 (464)
T ss_pred CCCCchhhHHhcCCcEEEecCcccccCCceEEEEEcHHHHHHHhh
Confidence 111110 01357999999999996 557999999999988774
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.3e-06 Score=90.41 Aligned_cols=87 Identities=23% Similarity=0.258 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcC-ccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEG-IFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~-v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
.++|++++... ++++||+.+ .|+ ...|+++|+++|+++|++|++|-||..|.+.. |....
T Consensus 287 yd~lek~a~~~------------rPKLII~g~Sayp---r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~---g~~~s- 347 (586)
T PLN02271 287 YDKLEEKALDF------------RPKILICGGSSYP---REWDYARFRQIADKCGAVLMCDMAHISGLVAA---KECVN- 347 (586)
T ss_pred HHHHHHHhhhc------------CCeEEEECchhcc---CcCCHHHHHHHHHHcCCEEEEECccccccccc---CcCCC-
Confidence 67787755431 456788877 444 55789999999999999999999999998742 22111
Q ss_pred CCCCCCccEEEeCccchh-ccccceeecCH
Q psy2206 352 GIDPREVDILMGTYTKSF-GSMGGYVAGSK 380 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~-G~~GG~v~gs~ 380 (430)
++ ..+||+++|.+|++ |..||+|..++
T Consensus 348 P~--~~aDvvt~TTHKtLrGPrGG~I~~r~ 375 (586)
T PLN02271 348 PF--DYCDIVTSTTHKSLRGPRGGIIFYRK 375 (586)
T ss_pred CC--cCCcEEEeCCcccCCCCCceEEEecc
Confidence 12 35799999999999 77888888765
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=98.35 E-value=7.9e-07 Score=93.27 Aligned_cols=128 Identities=19% Similarity=0.131 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCC-CcccC---HHHHHHHHHhcCcEEEEecccccc--cc------
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMD-GSIVR---LPEIVRLKNKYKAYLYVDEAHSIG--AL------ 340 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~-G~i~~---L~~I~~La~~y~~~LivDEAh~~G--~l------ 340 (430)
+++||+++.+. ...++++|+++.+.++. |.+.+ |++|.++|++||++||.|+||..+ ++
T Consensus 138 ~e~Le~~I~~~---------~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~ 208 (431)
T cd00617 138 VAKLEKLIDEV---------GAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREE 208 (431)
T ss_pred HHHHHHHhCcc---------cCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccc
Confidence 67788877641 01245678888777775 88775 668899999999999999998653 11
Q ss_pred CCCCCccce----ecCCCCCCccEEEeCccchhcc-ccceeecCH-HHHHHHHhcC---CcccccCCCcHHHHHHHHHHH
Q psy2206 341 GPTGRGVTE----YFGIDPREVDILMGTYTKSFGS-MGGYVAGSK-STIDYIRANS---HVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 341 G~~GrG~~e----~~g~~~~~~dIv~~TlSKa~G~-~GG~v~gs~-~li~~l~~~~---~~~~~s~s~~P~~~aaalaaL 411 (430)
|..+..+.+ .+. -.|....|+.|.++. .||+++++. ++++.++... .++.....+++...+++..+|
T Consensus 209 g~~~~si~ei~~e~~s----~sd~~~mS~~K~~~~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL 284 (431)
T cd00617 209 GYRDKSIAEIAREMFS----YADGCTMSAKKDGLVNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGL 284 (431)
T ss_pred cccCCCHHHHHHHhhc----cCCEEEEEeecCCCCccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHH
Confidence 111111111 111 125555566665443 489999986 6999888532 233334456666666544355
Q ss_pred HH
Q psy2206 412 RI 413 (430)
Q Consensus 412 ~~ 413 (430)
+-
T Consensus 285 ~e 286 (431)
T cd00617 285 RE 286 (431)
T ss_pred Hh
Confidence 43
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.2e-05 Score=82.74 Aligned_cols=146 Identities=23% Similarity=0.318 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHhCCC-------CCCCCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHh
Q psy2206 252 CTERSKESVKQSGCA-------LCSPSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNK 324 (430)
Q Consensus 252 v~~a~~~ai~~yG~g-------~~~sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~ 324 (430)
+=+...+.+++||.. .+-+-.|+++++.|++. + ...+|.+=..=..+|.+.||++|.++|++
T Consensus 91 FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~----------~-~~~~V~~vH~ETSTGvlnpl~~I~~~~k~ 159 (383)
T COG0075 91 FGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKD----------P-DIKAVAVVHNETSTGVLNPLKEIAKAAKE 159 (383)
T ss_pred HHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcC----------C-CccEEEEEeccCcccccCcHHHHHHHHHH
Confidence 456677788888863 33344489999999863 1 12233333333448999999999999999
Q ss_pred cCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc-cc-ceeecCHHHHHHHHhcCCc-c--------
Q psy2206 325 YKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS-MG-GYVAGSKSTIDYIRANSHV-R-------- 393 (430)
Q Consensus 325 y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~-~G-G~v~gs~~li~~l~~~~~~-~-------- 393 (430)
||+++|||=+-++|. +.+.++...+|++++.--|++++ +| |+++.|+...+.+....++ +
T Consensus 160 ~g~l~iVDaVsS~Gg---------~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~ 230 (383)
T COG0075 160 HGALLIVDAVSSLGG---------EPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWL 230 (383)
T ss_pred cCCEEEEEecccCCC---------cccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHH
Confidence 999999999877553 22334444679999999999975 56 7888888887777654322 1
Q ss_pred -------cccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 394 -------SYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 394 -------~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
.|-.++|.....+..++|+.+++|
T Consensus 231 ~~~~~~~~~p~Tppv~~i~aL~~al~~i~~E 261 (383)
T COG0075 231 KYMEKKGSTPYTPPVNLIYALREALDLILEE 261 (383)
T ss_pred HHHhhcCCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 122234555566678899999877
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=98.30 E-value=1e-06 Score=90.13 Aligned_cols=73 Identities=21% Similarity=0.298 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhhhcccCCcccCCCCCEEEE-eccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHH
Q psy2206 45 KFVLFYSRYVYRRIVDCFNRPVTSVPGAIITI-KDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESV 123 (430)
Q Consensus 45 ~~e~~~~r~l~~r~~d~~~rpi~~~~g~~i~v-~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al 123 (430)
.++.....++|+ +.+++.+.+|++|.+ .+ +++|||+|||||||+ .+|++++++.+++
T Consensus 8 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g----------------~~~i~~~~~~~lg~~-~~~~v~~~~~~~~ 65 (393)
T TIGR01822 8 ELESIREAGLFK-----SERIITSPQGADIRVADG----------------REVLNFCANNYLGLS-SHPDLIQAAKDAL 65 (393)
T ss_pred HHHHHHHcCCCC-----cccccccCCCceEEecCC----------------ceEEEeeCCCccccC-CCHHHHHHHHHHH
Confidence 344444444544 347889999998876 33 489999999999999 6999999999999
Q ss_pred hhhCCccccCCccccc
Q psy2206 124 KQSGCALCSPSGEIAS 139 (430)
Q Consensus 124 ~~yG~gs~~sr~~~g~ 139 (430)
++||.|.++||...|+
T Consensus 66 ~~~~~~~~~s~~~~G~ 81 (393)
T TIGR01822 66 DEHGFGMSSVRFICGT 81 (393)
T ss_pred HHhCCCCCCcCcccCC
Confidence 9999999999988885
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.3e-06 Score=94.39 Aligned_cols=119 Identities=13% Similarity=0.158 Sum_probs=73.5
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHH-HHhcCcEEEEeccccccc-cCCCCCccceecCCCCCCcc----EEEeCccchhc
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRL-KNKYKAYLYVDEAHSIGA-LGPTGRGVTEYFGIDPREVD----ILMGTYTKSFG 370 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~L-a~~y~~~LivDEAh~~G~-lG~~GrG~~e~~g~~~~~~d----Iv~~TlSKa~G 370 (430)
+.+||+.+-| +|.+.++++|+++ ++.++ +|+|||||+... |.+.-++.... .+. ...| +++.|.+|.++
T Consensus 284 k~vvit~pTY--dG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~p~~~~~p~~-al~-~GaD~p~i~v~QStHKtL~ 358 (720)
T PRK13578 284 RLAVIQLGTY--DGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFIPMMADCSPL-LLE-LNENDPGIFVTQSVHKQQA 358 (720)
T ss_pred eEEEEECCCC--cceeecHHHHHHHhhccCC-cEEEeCcchhhhccCcccccCChh-hhh-cCCCCCCeEEEEChhhcch
Confidence 5678888888 8999999999999 68888 999999998654 33321122111 111 1235 99999999997
Q ss_pred c--ccceeecCHHHH---------HHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCch
Q psy2206 371 S--MGGYVAGSKSTI---------DYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGD 421 (430)
Q Consensus 371 ~--~GG~v~gs~~li---------~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~ 421 (430)
+ +++++......+ +.++. +.....|||++-+.+|..-.+.++++++.|..
T Consensus 359 alTQaS~LHvk~~~i~g~~~~v~~~r~~~-al~m~qSTSPsY~LmASLDva~~~m~~~~G~~ 419 (720)
T PRK13578 359 GFSQTSQIHKKDNHIKGQARYCPHKRLNN-AFMLHASTSPFYPLFAALDVNAKMHEGESGRR 419 (720)
T ss_pred hhhhHhhhhcCCcccccccccCCHHHHHH-HHHHHcCCChHHHHHHHHHHHHHHHHHhhCHH
Confidence 4 557776543222 23332 21222355566555555555566666555543
|
|
| >KOG0256|consensus | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.2e-05 Score=82.11 Aligned_cols=109 Identities=19% Similarity=0.239 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCC-Cccce
Q psy2206 274 SSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTG-RGVTE 349 (430)
Q Consensus 274 ~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~G-rG~~e 349 (430)
++||++++++...+ -+.+-||+-.+.++-|++.+ |..++..+.++++.||+||+|+.-||+..+ +.+++
T Consensus 211 ~alE~A~~~A~~~~-------~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~~~F~Sv~e 283 (471)
T KOG0256|consen 211 EALEAALNQARKLG-------LKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDKSEFRSVLE 283 (471)
T ss_pred HHHHHHHHHHHHhC-------CceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCccCceEHHH
Confidence 88999998765332 24556667777888999887 777888889999999999999988898653 34444
Q ss_pred ecC---CCCCCccEEEeCccchhcccc---ceeec-CHHHHHHHHhcC
Q psy2206 350 YFG---IDPREVDILMGTYTKSFGSMG---GYVAG-SKSTIDYIRANS 390 (430)
Q Consensus 350 ~~g---~~~~~~dIv~~TlSKa~G~~G---G~v~g-s~~li~~l~~~~ 390 (430)
... ..++ ..=++-|+||-||++| |.|.. +++++...++.+
T Consensus 284 v~~~~~~~~~-rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kms 330 (471)
T KOG0256|consen 284 VRKDPHLDPD-RVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMS 330 (471)
T ss_pred HhhccccCCC-cEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHh
Confidence 321 1333 3345789999999999 88765 677888877754
|
|
| >KOG0633|consensus | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.2e-06 Score=83.07 Aligned_cols=100 Identities=23% Similarity=0.241 Sum_probs=75.1
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhc-CcEEEEeccccccccCCCCCc-cc-eecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKY-KAYLYVDEAHSIGALGPTGRG-VT-EYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y-~~~LivDEAh~~G~lG~~GrG-~~-e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
..+++++.++-+++|.+.....|..+.+.. +.+++|||||- -+-|..-+- ++ ++. .-|++.||||+||..
T Consensus 160 ~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYi-dFsg~~S~~~lV~kYp------NLivlqTlSKsfGLA 232 (375)
T KOG0633|consen 160 KIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYI-DFSGVESRMKLVKKYP------NLIVLQTLSKSFGLA 232 (375)
T ss_pred cceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeE-eeccccccchHhHhCC------ceeehhhhhhhcCcc
Confidence 456899999999999999999998888765 78999999984 322211111 11 222 257889999999999
Q ss_pred c---ceeecCHHHHHHHHhcCCcccccCCCcHH
Q psy2206 373 G---GYVAGSKSTIDYIRANSHVRSYATSMPPP 402 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~ 402 (430)
| ||.+.+..+++.+.....+|..|.+.+-+
T Consensus 233 GiRvG~~~~~~~ia~iln~~KaPYNiS~~~s~~ 265 (375)
T KOG0633|consen 233 GIRVGYGAFPLSIAEILNRAKAPYNISVAGSVA 265 (375)
T ss_pred eeEeecccccHHHHHHHHhccCCccccchhHHH
Confidence 9 99999999999998877777655544433
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.7e-06 Score=89.05 Aligned_cols=79 Identities=27% Similarity=0.329 Sum_probs=56.3
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEE--eccccccccCCCCCccceecCCCCCCccEEEe---Cccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYV--DEAHSIGALGPTGRGVTEYFGIDPREVDILMG---TYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~Liv--DEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~---TlSKa~G 370 (430)
++++|++..+ +++|.+.|+++|.++|+++|+++++ |.+ +.|.+.. .+ ..++|++++ +|||.+.
T Consensus 204 ~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~~~--------~~--~~~~D~~~~s~~k~~~~~~ 271 (447)
T PRK00451 204 DTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLLKP--------PG--EYGADIVVGEGQPLGIPLS 271 (447)
T ss_pred CeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccCCC--------cc--cCCCCEEEECCCcCCCCCC
Confidence 3567777777 8899999999999999999999998 433 4443311 11 124688888 6677653
Q ss_pred c--cc-ceeecCHHHHHHH
Q psy2206 371 S--MG-GYVAGSKSTIDYI 386 (430)
Q Consensus 371 ~--~G-G~v~gs~~li~~l 386 (430)
+ +| |++..++++++.+
T Consensus 272 ~~Gpg~G~l~~~~~~~~~~ 290 (447)
T PRK00451 272 FGGPYLGFFATRKKLVRQM 290 (447)
T ss_pred CCCCCchHHHhhHHHHhhC
Confidence 3 33 8888888888874
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.9e-06 Score=93.47 Aligned_cols=136 Identities=12% Similarity=0.086 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccc-cCCCCCccc-eec
Q psy2206 274 SSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGA-LGPTGRGVT-EYF 351 (430)
Q Consensus 274 ~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~-lG~~GrG~~-e~~ 351 (430)
+.+++.|++. |+..+| ..+||+.+-| +|.+.++++|+++|+.++ |+|||||+... |.+.-++.. -..
T Consensus 283 e~i~~~i~~~-----p~ak~p--~~~vit~pTY--dG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam~~ 351 (714)
T PRK15400 283 ATIAKRVKET-----PNATWP--VHAVITNSTY--DGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSG 351 (714)
T ss_pred HHHHHHHHhC-----ccccCc--cEEEEECCCC--ccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccCCcChhhc
Confidence 5677777653 322112 3588888877 899999999999999887 68999997543 332111100 011
Q ss_pred CCCCCCccEEEeCccchhcc--ccceeecCHHHH-HHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCch
Q psy2206 352 GIDPREVDILMGTYTKSFGS--MGGYVAGSKSTI-DYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGD 421 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~--~GG~v~gs~~li-~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~ 421 (430)
+..+++..+++.|.+|.+++ +++++.....+- +.+.. +.....|||++-+.+|....+..++.++.|..
T Consensus 352 ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~vd~~~~n~-a~~m~~STSPsY~l~ASLD~a~~~m~~~~G~~ 423 (714)
T PRK15400 352 GRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNE-AYMMHTTTSPHYGIVASTETAAAMMKGNAGKR 423 (714)
T ss_pred CCCCCCceEEEEchhhcccchhHHhHHHHcCCCCHHHHHH-HHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHH
Confidence 22112223999999999974 445554322211 22222 21222356666666665566666665545543
|
|
| >KOG1360|consensus | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.2e-07 Score=91.09 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=44.5
Q ss_pred CcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCcccccc
Q psy2206 93 TESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASM 140 (430)
Q Consensus 93 ~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~~ 140 (430)
+.+++--||||||||++ .||++.+|+.++|++||.|++|.|.+.|+.
T Consensus 169 t~k~VtVWCSNDYLgms-~Hp~V~~A~~~tl~~hG~GAGGTRNIsG~s 215 (570)
T KOG1360|consen 169 TEKKVTVWCSNDYLGMS-RHPEVLDAMHDTLDRHGAGAGGTRNISGHS 215 (570)
T ss_pred ccCceEEEecCcccccc-CChHHHHHHHHHHHHcCCCcCCccccCCCC
Confidence 45789999999999999 699999999999999999999999999987
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.8e-06 Score=89.39 Aligned_cols=80 Identities=13% Similarity=0.136 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhhhcccCCcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHHh
Q psy2206 45 KFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVK 124 (430)
Q Consensus 45 ~~e~~~~r~l~~r~~d~~~rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~ 124 (430)
.++....+++|+.. +++.+.+|+.+.+.-. ..+++++++||+|||||||+ .+|.+++++.++++
T Consensus 11 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~sn~yl~l~-~~p~v~~a~~~~~~ 74 (410)
T PRK13392 11 ALAQLHQEGRYRVF-----ADLEREAGRFPRARDH----------GPDGPRRVTIWCSNDYLGMG-QHPDVIGAMVDALD 74 (410)
T ss_pred HHHHHHHcCCCccc-----cccccccCccceeeec----------ccCCCceEEEEECCCccCCC-CCHHHHHHHHHHHH
Confidence 34444444454443 6777777765433110 00224689999999999999 69999999999999
Q ss_pred hhCCccccCCcccccc
Q psy2206 125 QSGCALCSPSGEIASM 140 (430)
Q Consensus 125 ~yG~gs~~sr~~~g~~ 140 (430)
+||+++++||...|+.
T Consensus 75 ~~~~~~~~s~~~~~~~ 90 (410)
T PRK13392 75 RYGAGAGGTRNISGTS 90 (410)
T ss_pred HcCCCCchhhhcccCh
Confidence 9999999999988875
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=8e-06 Score=90.05 Aligned_cols=135 Identities=14% Similarity=0.123 Sum_probs=77.5
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEE-EEeccccccc-cCCCCCccceec
Q psy2206 274 SSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYL-YVDEAHSIGA-LGPTGRGVTEYF 351 (430)
Q Consensus 274 ~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~L-ivDEAh~~G~-lG~~GrG~~e~~ 351 (430)
+.++++|++. |+..+| +.+||+.+-| +|.+.++++|+++| |+.+ +|||||+... |.+.-.+.....
T Consensus 283 e~I~~~i~~~-----p~~~~p--~~vvit~pTY--dGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sam~ 350 (713)
T PRK15399 283 DSIEEKVAAT-----TQAQWP--VHAVITNSTY--DGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSGMS 350 (713)
T ss_pred HHHHHHHHhC-----CCcCCc--eEEEEECCCC--CceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcccCCcChhh
Confidence 6677777763 322222 4688888877 89999999999999 5666 5999997543 333111111000
Q ss_pred CC-CCCCccEEEeCccchhcc--ccceeecCHHHH-HHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCch
Q psy2206 352 GI-DPREVDILMGTYTKSFGS--MGGYVAGSKSTI-DYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGD 421 (430)
Q Consensus 352 g~-~~~~~dIv~~TlSKa~G~--~GG~v~gs~~li-~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~ 421 (430)
+. .++-+++++.|.+|.+++ +++++.....+- +.++. +.....|||++-+.+|....+.+++.++.|..
T Consensus 351 ~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~vd~~~~n~-a~~m~~STSPsY~LmASLD~a~~~m~~~~G~~ 423 (713)
T PRK15399 351 GERVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNE-AFMMHTSTSPSYPIVASVETAAAMLRGNPGKR 423 (713)
T ss_pred CCCCCCeeeeeeeehhccccccchheeeeecCCCCHHHHHH-HHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHH
Confidence 11 112233449999999974 556765543322 22222 21222356666666665555666665545543
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=1e-05 Score=83.00 Aligned_cols=101 Identities=13% Similarity=0.120 Sum_probs=64.3
Q ss_pred CCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCcc--chhcc--ccceeecCHHH
Q psy2206 307 SMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYT--KSFGS--MGGYVAGSKST 382 (430)
Q Consensus 307 sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlS--Ka~G~--~GG~v~gs~~l 382 (430)
+++|...++++|+++|++||++||.|+||+.|..- .|+.+ ..+ .|+.+-||+ |.+++ -|+++..++++
T Consensus 127 ~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~-~~~~~-g~~------~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~ 198 (375)
T PRK11706 127 HYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTY-KGRAL-GTI------GHIGCFSFHETKNYTAGEGGALLINDPAL 198 (375)
T ss_pred CCCCCccCHHHHHHHHHHcCCEEEEECcccccccc-CCeee-ecC------cCEEEEeCCCCccccccCCeEEEECCHHH
Confidence 35799999999999999999999999999987621 12211 111 144444444 99954 23466667888
Q ss_pred HHHHHhcCC-----c--------------ccccCCCcHHHHHHHHHHHHHHH
Q psy2206 383 IDYIRANSH-----V--------------RSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 383 i~~l~~~~~-----~--------------~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
++.++.... . ..++.-++.++++..+..|+.+.
T Consensus 199 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l~ 250 (375)
T PRK11706 199 IERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLEAAD 250 (375)
T ss_pred HHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHHHHH
Confidence 865543210 0 11233356677777777777663
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.4e-06 Score=85.26 Aligned_cols=105 Identities=14% Similarity=0.157 Sum_probs=78.3
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|++|.+-++++.++|+++|.++|++++ ++||.+++.+..++ ..+ ...||++.|.+|.++.
T Consensus 148 ~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~~~~-------pl~---~gaDivv~S~tK~i~G~~d~ 215 (384)
T PRK06434 148 NYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPYNQN-------PLD---LGADVVIHSATKYISGHSDV 215 (384)
T ss_pred CeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCcccCC-------chh---cCCCEEEeecccccCCCCCc
Confidence 5679999999999999999999999999998 57799986654332 111 2469999999999953
Q ss_pred ccceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.||+|+. ++++.+.++.... .++..++|..++..+..|+.+
T Consensus 216 ~gG~vv~~~~~~~~~~~~~~~--~~G~~~~~~~A~l~~~gL~tL 257 (384)
T PRK06434 216 VMGVAGTNNKSIFNNLVERRK--TLGSNPDPIQAYLALRGLKTL 257 (384)
T ss_pred eEEEEecCcHHHHHHHHHHHH--hcCCCCCHHHHHHHHhCCCcH
Confidence 4687765 5677666664321 245667899888877766655
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=2e-06 Score=87.94 Aligned_cols=45 Identities=9% Similarity=0.220 Sum_probs=42.0
Q ss_pred ceeEEeeeccccCCCCCChhhHHHHHHHHhhh-------CCccccCCcccccc
Q psy2206 95 STCLNLASYNYLGFGENTGLCTERSKESVKQS-------GCALCSPSGEIASM 140 (430)
Q Consensus 95 ~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~y-------G~gs~~sr~~~g~~ 140 (430)
.++|||+||||||++ .+|.+.+++.+++++| |+|++|||+..|+.
T Consensus 4 ~~~~~~~s~~YL~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~ 55 (370)
T PRK05937 4 SLSIDFVTNDFLGFS-RSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPS 55 (370)
T ss_pred CceEEeECCCccCCC-CCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCCh
Confidence 479999999999999 6999999999999999 79999999988866
|
|
| >KOG1358|consensus | Back alignment and domain information |
|---|
Probab=98.11 E-value=2.9e-06 Score=86.17 Aligned_cols=103 Identities=28% Similarity=0.466 Sum_probs=71.3
Q ss_pred cccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC-------HHH
Q psy2206 203 VTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA-------PSS 275 (430)
Q Consensus 203 i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~-------~~~ 275 (430)
+.++.++++++. | ++++||+|+|||||..++ ++++.+...+++||+|+|++|. -.+
T Consensus 81 ~e~~~~~~~~i~--------------G--~~~~N~aS~NfL~l~~~~-~ike~a~~~lrkyGvGsCGPrGFYGt~DvHld 143 (467)
T KOG1358|consen 81 LESVMLPHVTID--------------G--KDVLNFASANFLGLIENE-EIKEEASFTLRKYGVGSCGPRGFYGTIDVHLD 143 (467)
T ss_pred cccccCCceEec--------------C--ceeecccchhhhhhcccH-HHHHHHHHHHHHhCCCCcCCCcccccceeecc
Confidence 466777788775 4 899999999999999986 7899999999999999999998 256
Q ss_pred HHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHH-HHHHHHHhcCcEEEEeccccccc
Q psy2206 276 LEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLP-EIVRLKNKYKAYLYVDEAHSIGA 339 (430)
Q Consensus 276 Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~-~I~~La~~y~~~LivDEAh~~G~ 339 (430)
||+.|.+-. |.+ ..+| ||. | .+-++ .|-++|++ |=++++||+-.+.+
T Consensus 144 lE~~iakF~--G~E-------~aiv-----Ys~-g-F~ti~S~ipafsKr-GDIi~~de~~nfaI 191 (467)
T KOG1358|consen 144 LEKRIAKFM--GTE-------DAIV-----YSY-G-FSTIESAIPAFSKR-GDIIFVDEAVNFAI 191 (467)
T ss_pred cHHHHHHhh--CCc-------ceee-----ecc-c-cchhhhcchhhhcc-CcEEEEehhhhHHH
Confidence 777776531 221 2222 221 1 11122 45566766 44567788765554
|
|
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.2e-05 Score=85.66 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcc-cCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSI-VRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i-~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
+++|++++.+ ++++|++..+. ++|.+ .|+++|+++|+++|++++||+||..+.+|.... ..
T Consensus 198 ~e~L~~~i~~-------------~t~~V~v~~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~---~~- 259 (481)
T PRK04366 198 LEALKAAVGE-------------DTAALMLTNPN-TLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKARP---GD- 259 (481)
T ss_pred HHHHHhhccc-------------CCeEEEEeCCC-CccccchHHHHHHHHHHHcCCEEEEEecChhhhcccCCc---cc-
Confidence 5667666543 24455555554 78877 489999999999999999999998665543211 12
Q ss_pred CCCCCCccEEEeCccchhccc---c----ceeecCHHHHHHH
Q psy2206 352 GIDPREVDILMGTYTKSFGSM---G----GYVAGSKSTIDYI 386 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~~---G----G~v~gs~~li~~l 386 (430)
..+|+++++.+|.||.+ | |+++.++++.+.+
T Consensus 260 ----~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~l 297 (481)
T PRK04366 260 ----MGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFL 297 (481)
T ss_pred ----cCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhC
Confidence 24699999999998743 2 6888888777766
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.4e-05 Score=79.05 Aligned_cols=97 Identities=25% Similarity=0.260 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+.+.. ..++++|+.- ++.|...|+++|.++|++||++||+|++|++|.. -.|. ..|
T Consensus 107 ~~~l~~~i~~~~---------~~~t~~v~~~---~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~-~~~~----~~g 169 (380)
T TIGR03588 107 EDALEKKLAAAK---------GKLPKAIVPV---DFAGKSVDMQAIAALAKKHGLKIIEDASHALGAE-YGGK----PVG 169 (380)
T ss_pred HHHHHHHhhccc---------CCCceEEEEe---CCCCccCCHHHHHHHHHHcCCEEEEECCCcccCc-cCCE----eCC
Confidence 677887776310 0123344432 2469999999999999999999999999998752 1121 122
Q ss_pred CCCCCccEEEeCcc--chhcc-ccceeec-CHHHHHHHH
Q psy2206 353 IDPREVDILMGTYT--KSFGS-MGGYVAG-SKSTIDYIR 387 (430)
Q Consensus 353 ~~~~~~dIv~~TlS--Ka~G~-~GG~v~g-s~~li~~l~ 387 (430)
.. .-.|+.+.||+ |.++. .||+++. ++++.+.++
T Consensus 170 ~~-~~~d~~~~S~~~~K~~~~~~GG~v~~~~~~~~~~~~ 207 (380)
T TIGR03588 170 NC-RYADATVFSFHPVKIITTAEGGAVTTNDEELAERMR 207 (380)
T ss_pred Cc-cccceEEEecCCCCcccccCceEEEECCHHHHHHHH
Confidence 21 12378888887 88864 6676665 577776665
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.2e-06 Score=85.77 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=63.0
Q ss_pred HHHHHHHHhhhcccCCcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhC-
Q psy2206 49 FYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSG- 127 (430)
Q Consensus 49 ~~~r~l~~r~~d~~~rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG- 127 (430)
...|+.|+|..|||.+|+.+.|...+.+..+ +. .-++-+++++|||+|++||||. +||++++|+.+.+++||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----G~-~~~d~~g~~~ld~~s~~~lgl~-~~p~v~~A~~~~l~~~g~ 78 (402)
T PRK07505 6 RNNKKRINRAEKFWDAAYDEGLNGLTVGERE-----GI-LITLADGHTFVNFVSCSYLGLD-THPAIIEGAVDALKRTGS 78 (402)
T ss_pred HHHHHHHHhhHHHHHHHHhcccccceeeccC-----Cc-cEEecCCceEEEeecCCccCCC-CCHHHHHHHHHHHHHhCC
Confidence 3467789999999999998887765433332 11 1233456789999999999996 79999999999999999
Q ss_pred CccccCCccc
Q psy2206 128 CALCSPSGEI 137 (430)
Q Consensus 128 ~gs~~sr~~~ 137 (430)
.++++++...
T Consensus 79 ~~~~~~~~~~ 88 (402)
T PRK07505 79 LHLSSSRTRV 88 (402)
T ss_pred CCCCccchhh
Confidence 6777776533
|
|
| >KOG0259|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.4e-05 Score=77.54 Aligned_cols=112 Identities=21% Similarity=0.203 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhCCCCCCCCC------------------------------HHHHHHHHHHHhhcCCCCCCCCCceEEEE
Q psy2206 252 CTERSKESVKQSGCALCSPSA------------------------------PSSLEAGLQKALLEGQPHSGKPWRKILIV 301 (430)
Q Consensus 252 v~~a~~~ai~~yG~g~~~sr~------------------------------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi 301 (430)
.++-+.+++.+=|...-.+|. .+.+|++..+ +++.+|
T Consensus 138 AIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DE-------------NT~Aiv 204 (447)
T KOG0259|consen 138 AIELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADE-------------NTVAIV 204 (447)
T ss_pred HHHHHHHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhcc-------------CeeEEE
Confidence 367777777776665555554 2556666544 678888
Q ss_pred EcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc---ce
Q psy2206 302 VEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG---GY 375 (430)
Q Consensus 302 ~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G---G~ 375 (430)
+-.+.++.|.+.. |++|+++|+++++++|.||+|+.-+||..-.-....+. ..-..|.+|++||.+=.+| ||
T Consensus 205 viNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fs--siVPVitlggisKrW~VPGWRlGW 282 (447)
T KOG0259|consen 205 VINPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFS--SIVPVITLGGISKRWIVPGWRLGW 282 (447)
T ss_pred EeCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhcc--ccCceEeecccccccccCCceeee
Confidence 8889999999886 99999999999999999999998888853221111222 1123688999999998888 88
Q ss_pred eec
Q psy2206 376 VAG 378 (430)
Q Consensus 376 v~g 378 (430)
++.
T Consensus 283 i~~ 285 (447)
T KOG0259|consen 283 IAL 285 (447)
T ss_pred EEE
Confidence 763
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.3e-05 Score=80.77 Aligned_cols=99 Identities=16% Similarity=0.178 Sum_probs=64.9
Q ss_pred CCCCcccCHHHHHHHHHhcCcEEEEeccccccc-cCCCCCccceecCCCCCCccEEEeCcc----chhc--cccceeec-
Q psy2206 307 SMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGA-LGPTGRGVTEYFGIDPREVDILMGTYT----KSFG--SMGGYVAG- 378 (430)
Q Consensus 307 sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~-lG~~GrG~~e~~g~~~~~~dIv~~TlS----Ka~G--~~GG~v~g- 378 (430)
.++|...++++|+++|++||++||.|++|+.|. +. |+. .|. -.|+. +|| |.+. ..||+++.
T Consensus 127 ~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~~~--~~~----~g~---~~~~~--~fSf~~~K~l~~g~~gG~v~~~ 195 (376)
T TIGR02379 127 HYAGVACDMDTIMALANKHQLFVIEDAAQGVMSTYK--GRA----LGS---IGHLG--TFSFHETKNYTSGGEGGALLIN 195 (376)
T ss_pred CCCCCccCHHHHHHHHHHCCCEEEEECccccCCccC--Ccc----cCC---CCCEE--EEeCCCCCcCcccCCceEEEEC
Confidence 457999999999999999999999999999775 32 221 111 11343 555 7664 36788655
Q ss_pred CHHHHHHHHhcCC---c----------------ccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 379 SKSTIDYIRANSH---V----------------RSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 379 s~~li~~l~~~~~---~----------------~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
++++++.++.... . .-+..-++.++++..++.|+.+.+
T Consensus 196 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~~ 252 (376)
T TIGR02379 196 DQAFIERAEIIREKGTNRSQFFRGEVDKYTWRDIGSSYLPSELQAAYLWAQLEQADR 252 (376)
T ss_pred CHHHHHHHHHHHHhCCCCccccccCCCcceeeeecccCCccHHHHHHHHHHHHHhHH
Confidence 4888877764211 0 123344567777777777777744
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.2e-05 Score=85.76 Aligned_cols=113 Identities=19% Similarity=0.259 Sum_probs=75.3
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhc--cccc
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG--SMGG 374 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G--~~GG 374 (430)
+.+||+.+-| +|.+.++++|+++++++++|+.+||+|.... +..+. ..+ ..+. ...|+++.|.+|.+| +++.
T Consensus 168 k~~vitnpTY--dGv~~n~~~i~~~~~~~~a~v~~deah~~~~-~~~~~-l~~-~~~~-~~~~~~tqS~HK~l~alSQaS 241 (557)
T COG1982 168 KLAVITNPTY--DGVCYNLRKIVELLHHYGAWVLYDEAHPAHF-DFSPM-LPE-SALN-GGADFVTQSTHKLLAALSQAS 241 (557)
T ss_pred eeEEEecCcc--ceEeecHHHHHHHHhhcCceEEhhhcCcccc-ccccc-Ccc-hhhh-cCceEEEechhhhhhhhhhhH
Confidence 7789999988 8999999999999999999999999997653 22111 111 1221 356999999999997 3566
Q ss_pred eeecCH-------HHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCch
Q psy2206 375 YVAGSK-------STIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGD 421 (430)
Q Consensus 375 ~v~gs~-------~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~ 421 (430)
++.... .+-+++.. ++++.|...+.|++.+.+.+.+..|..
T Consensus 242 ~iHv~~~~~~~~~r~nea~~~------h~STSPsY~l~ASlD~Ar~~~~~~G~~ 289 (557)
T COG1982 242 MIHVKDGRAVNHERFNEALMM------HQSTSPSYPLMASLDVARMQEGNAGRE 289 (557)
T ss_pred HHhhCCCccCCHHHHHHHHHH------HccCCchHHHHHHHHHHHHhhhhhhHH
Confidence 665542 22233322 233334444455666677776666643
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.5e-05 Score=79.28 Aligned_cols=72 Identities=26% Similarity=0.455 Sum_probs=49.3
Q ss_pred CCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCcc--chhc-cccceeec-CHHHH
Q psy2206 308 MDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYT--KSFG-SMGGYVAG-SKSTI 383 (430)
Q Consensus 308 m~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlS--Ka~G-~~GG~v~g-s~~li 383 (430)
+.|...|+++|.++|++||++||+|+||++|..- .|+ ..+- ...++. ||+ |.+. ..||+++. +++++
T Consensus 130 ~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~-~~~----~~g~--~g~~~~--Sf~~~K~l~~g~GG~v~~~~~~~~ 200 (379)
T PRK11658 130 YAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYY-KGR----HIGA--RGTAIF--SFHAIKNITCAEGGLVVTDDDELA 200 (379)
T ss_pred CCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeE-CCe----ecCC--CCCEEE--eCCCCCcCcccCceEEEECCHHHH
Confidence 4799999999999999999999999999987531 121 1121 122444 655 5553 35787776 47887
Q ss_pred HHHHh
Q psy2206 384 DYIRA 388 (430)
Q Consensus 384 ~~l~~ 388 (430)
+.++.
T Consensus 201 ~~~~~ 205 (379)
T PRK11658 201 DRLRS 205 (379)
T ss_pred HHHHH
Confidence 76653
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.5e-05 Score=79.98 Aligned_cols=123 Identities=15% Similarity=0.218 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcC-ccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEG-IFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~-v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
.+.+++++++. +..+||+.+ .| --..|+++++++|++.|++|++|=+|-.|.+.. |....
T Consensus 158 ~d~l~~~a~~~------------kPklIi~G~S~y---~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~---g~~~~- 218 (399)
T PF00464_consen 158 YDELEKLAKEH------------KPKLIICGASSY---PRPIDFKRFREIADEVGAYLMADISHIAGLIAG---GLFPN- 218 (399)
T ss_dssp HHHHHHHHHHH--------------SEEEEE-SST---SS---HHHHHHHHHHTT-EEEEE-TTTHHHHHT---TSS---
T ss_pred HHHHHHHHhhc------------CCCEEEECchhc---cCccCHHHHHHHHHhcCcEEEecccccccceeh---heecC-
Confidence 68888888775 233566654 33 334689999999999999999999999887631 33222
Q ss_pred CCCCCCccEEEeCccchh-ccccceeecC--------------HHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 352 GIDPREVDILMGTYTKSF-GSMGGYVAGS--------------KSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~-G~~GG~v~gs--------------~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
++ ...||+++|.+|+| |..||+|.++ +++.+.+.....+.+.+ .+..-..++...++...++
T Consensus 219 P~--~~ADvvt~sThKtl~GPrggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg-~~h~~~iaalAval~ea~~ 295 (399)
T PF00464_consen 219 PF--PYADVVTGSTHKTLRGPRGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQG-GPHMHRIAALAVALKEALS 295 (399)
T ss_dssp GC--CTSSEEEEESSGGG-SSS-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-S-S--HHHHHHHHHHHHHHTS
T ss_pred cc--ccceEEEeeccccccccCceEEEEcCCccccCCcccccHHHHHHHhccccCCCccc-CcchhHHHHHHHHHhcccC
Confidence 23 24799999999999 6789999999 88888888754443323 2333333434445554443
Q ss_pred c
Q psy2206 417 L 417 (430)
Q Consensus 417 ~ 417 (430)
.
T Consensus 296 ~ 296 (399)
T PF00464_consen 296 P 296 (399)
T ss_dssp H
T ss_pred H
Confidence 3
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=3.8e-05 Score=78.91 Aligned_cols=146 Identities=16% Similarity=0.157 Sum_probs=99.0
Q ss_pred CCcHHHHHHHHHHHHHhCCCCCCCC-------CHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHH
Q psy2206 247 ENTGLCTERSKESVKQSGCALCSPS-------APSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIV 319 (430)
Q Consensus 247 ~~~~~v~~a~~~ai~~yG~g~~~sr-------~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~ 319 (430)
.|+ .|.+.+... ++.|...+--. .+++|+++|++ ++++|-+=.+.|..|.+-|+++|.
T Consensus 100 EH~-aVl~~~~~L-e~~g~~Vtyl~V~~~G~v~~e~L~~al~~-------------~T~LVSim~aNnE~G~IQpI~ei~ 164 (386)
T COG1104 100 EHP-AVLNTCRYL-ERQGFEVTYLPVDSNGLVDLEQLEEALRP-------------DTILVSIMHANNETGTIQPIAEIG 164 (386)
T ss_pred ccH-HHHHHHHHH-HhcCCeEEEeCCCCCCeEcHHHHHHhcCC-------------CceEEEEEecccCeeecccHHHHH
Confidence 454 677877776 77675443211 17899998875 488999999999999999999999
Q ss_pred HHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-ceeecCHHHH-HHHHhc---CCccc
Q psy2206 320 RLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-GYVAGSKSTI-DYIRAN---SHVRS 394 (430)
Q Consensus 320 ~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li-~~l~~~---~~~~~ 394 (430)
++|+++++++-+|=++++|-+- ..+....+|++.-|-+|-.|.-| |++..++.+. ..+... -++ .
T Consensus 165 ~i~k~~~i~fHvDAvQa~Gkip---------i~~~~~~vD~ls~SaHK~~GpkGiGaLyv~~~~~~~p~i~GGgQE~g-~ 234 (386)
T COG1104 165 EICKERGILFHVDAVQAVGKIP---------IDLEELGVDLLSFSAHKFGGPKGIGALYVRPGVRLEPLIHGGGQERG-L 234 (386)
T ss_pred HHHHHcCCeEEEehhhhcCcee---------ccccccCcceEEeehhhccCCCceEEEEECCCCccCceeccCcCCCC-C
Confidence 9999999999999999865321 12221237999889999988766 6665444332 222221 111 2
Q ss_pred ccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 395 YATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 395 ~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
-+.+.+.+.+++.-+|+++..++
T Consensus 235 RsGTenv~~Ivg~~~A~~~a~~~ 257 (386)
T COG1104 235 RSGTENVPGIVGFGKAAEIAVEE 257 (386)
T ss_pred CCCCccHHHHHHHHHHHHHHHHH
Confidence 24556666666666677766544
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.4e-05 Score=80.52 Aligned_cols=117 Identities=14% Similarity=0.085 Sum_probs=81.9
Q ss_pred EEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc-cc-cee
Q psy2206 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS-MG-GYV 376 (430)
Q Consensus 299 lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~-~G-G~v 376 (430)
+|.+-.+.+.+|.+.|+++|++ ++||++++||=++++|.. ...+ +++|+++.|..|.++. +| |++
T Consensus 139 ~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~---------pidv--~~iD~~~~s~~K~l~~P~G~g~l 205 (378)
T PRK03080 139 DVVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFAL---------PLDW--SKLDVYTFSWQKVLGGEGGHGMA 205 (378)
T ss_pred CEEEEecCCccceeccchhhcc--ccCCCeEEEecccccccC---------CCCH--HHCcEEEEehhhhCCCCCceEEE
Confidence 4667778888999999999999 789999999999987753 1233 3579999999999965 67 899
Q ss_pred ecCHHHHHHHHhcCCc-------------------ccccC--CCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 377 AGSKSTIDYIRANSHV-------------------RSYAT--SMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 377 ~gs~~li~~l~~~~~~-------------------~~~s~--s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
..+++.++.+.....+ +...+ .++.....+..++|+.++++.+.+...+|.+
T Consensus 206 ~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~ 278 (378)
T PRK03080 206 ILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTA 278 (378)
T ss_pred EECHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999998876642100 00111 1223334445778999987645555555543
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00016 Score=74.91 Aligned_cols=137 Identities=20% Similarity=0.159 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcC---cEEEEeccccccccCCCCCccce
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYK---AYLYVDEAHSIGALGPTGRGVTE 349 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~---~~LivDEAh~~G~lG~~GrG~~e 349 (430)
+++|+++|++. ..++++|++-...+++|.+.|+++|.++|++|| +++.||=||+.+++-- -+.. .
T Consensus 147 ~~~L~~~i~~~----------~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~-~~~~-~ 214 (380)
T PRK02769 147 YDDLISKIKEN----------KNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPF-VNNP-P 214 (380)
T ss_pred HHHHHHHHHhC----------CCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecc-cCcc-c
Confidence 68888888762 114678888889999999999999999999998 6999999998765421 0000 0
Q ss_pred ecCCCCCCccEEEeCccchhcc-cc-ceeecCHHHHHHHHhcCCcc------cccCCCcHHHHHHHHHHHHHHHccCCch
Q psy2206 350 YFGIDPREVDILMGTYTKSFGS-MG-GYVAGSKSTIDYIRANSHVR------SYATSMPPPVAMQILTSMRIIMGLENGD 421 (430)
Q Consensus 350 ~~g~~~~~~dIv~~TlSKa~G~-~G-G~v~gs~~li~~l~~~~~~~------~~s~s~~P~~~aaalaaL~~l~~~~~~~ 421 (430)
.+... ..+|.+..|.+|-++. .| |++..+++.++.+... ..| ....+-+...+++.-++|+.+ +.+|..
T Consensus 215 ~~d~~-~~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~-~~yl~~~d~t~~GSR~g~~~l~lw~aL~~l-g~~G~~ 291 (380)
T PRK02769 215 PFSFA-DGIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVD-VDYIGSRDQTISGSRNGHTALLLWAAIRSL-GSKGLR 291 (380)
T ss_pred cCCcc-CCCCEEEECCcccCCCCCCcEEEEEehhhhhhcccC-ccccCCCCCCccCCCCcHHHHHHHHHHHHH-CHHHHH
Confidence 12332 2579999999998873 33 7777777666554321 111 123333434455566677765 333444
Q ss_pred HHH
Q psy2206 422 EGN 424 (430)
Q Consensus 422 ~~~ 424 (430)
+..
T Consensus 292 ~~~ 294 (380)
T PRK02769 292 QRV 294 (380)
T ss_pred HHH
Confidence 433
|
|
| >KOG1549|consensus | Back alignment and domain information |
|---|
Probab=97.88 E-value=2e-05 Score=81.58 Aligned_cols=76 Identities=20% Similarity=0.297 Sum_probs=63.8
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-c
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-G 374 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G 374 (430)
++++|.++.|.||.|.+-|+++|+.+|+++++.+.+|=||++|-.- .++..-.+|.+..+.+|.||.+| |
T Consensus 181 ~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~---------vDV~eln~D~~s~s~HK~ygp~~iG 251 (428)
T KOG1549|consen 181 KTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIP---------VDVQELNADFLSISAHKIYGPPGIG 251 (428)
T ss_pred CceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCCcc---------ccHHHcCchheeeecccccCCCcce
Confidence 5889999999999999999999999999999999999999977431 12222346899999999999987 7
Q ss_pred eeecCH
Q psy2206 375 YVAGSK 380 (430)
Q Consensus 375 ~v~gs~ 380 (430)
++..++
T Consensus 252 aLYvr~ 257 (428)
T KOG1549|consen 252 ALYVRR 257 (428)
T ss_pred EEEEcc
Confidence 776665
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00012 Score=77.05 Aligned_cols=109 Identities=20% Similarity=0.221 Sum_probs=70.4
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCcc--chhc-ccc
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYT--KSFG-SMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlS--Ka~G-~~G 373 (430)
+++|++..+ .|...++++|.++|++||++||+|++|++|..- .|+. +..+| |+.+-||. |.+. ..|
T Consensus 160 tkaVi~~~~---~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~-~g~~-~G~~g------d~~~fSf~~~k~~~~geG 228 (438)
T PRK15407 160 TKAIMIAHT---LGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTY-DGRM-TGTFG------DIATLSFYPAHHITMGEG 228 (438)
T ss_pred CeEEEEeCC---CCChhhHHHHHHHHHHCCCEEEEECccchhhhc-CCee-eeccC------ceEEEeCCCCCCccccCc
Confidence 456666655 377789999999999999999999999987632 1221 11222 56666665 4453 357
Q ss_pred ceeecC-HHHHHHHH---hcCCc----------------------------------ccccCCCcHHHHHHHHHHHHHHH
Q psy2206 374 GYVAGS-KSTIDYIR---ANSHV----------------------------------RSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 374 G~v~gs-~~li~~l~---~~~~~----------------------------------~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
|+++.+ +++.+.++ ..... ..+...++.++||.++..|+.+.
T Consensus 229 G~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l~ 308 (438)
T PRK15407 229 GAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKLP 308 (438)
T ss_pred eEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccccccccccccccccccccccCccHHHHHHHHHHHHHHH
Confidence 887765 45544333 22110 12345678899998888888774
Q ss_pred c
Q psy2206 416 G 416 (430)
Q Consensus 416 ~ 416 (430)
+
T Consensus 309 ~ 309 (438)
T PRK15407 309 G 309 (438)
T ss_pred H
Confidence 4
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=97.80 E-value=9.6e-05 Score=75.52 Aligned_cols=121 Identities=25% Similarity=0.280 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++.+ +++.||+-.+| |..+++++|.++|++||++||-|=||++|..- .|+ ..|
T Consensus 103 ~~~~~~~i~~-------------~t~ai~~~h~~---G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~-~g~----~~G 161 (363)
T PF01041_consen 103 PEALEKAITP-------------KTKAILVVHLF---GNPADMDAIRAIARKHGIPLIEDAAQAFGARY-KGR----PVG 161 (363)
T ss_dssp HHHHHHHHHT-------------TEEEEEEE-GG---GB---HHHHHHHHHHTT-EEEEE-TTTTT-EE-TTE----ETT
T ss_pred HHHHHHHhcc-------------CccEEEEecCC---CCcccHHHHHHHHHHcCCcEEEccccccCcee-CCE----ecc
Confidence 6889998875 34555555555 88889999999999999999999999987621 122 122
Q ss_pred CCCCCccEEEeCc--cchhc-cccceeecC-HHHHHHHHhc---CCc------------ccccCCCcHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTY--TKSFG-SMGGYVAGS-KSTIDYIRAN---SHV------------RSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 353 ~~~~~~dIv~~Tl--SKa~G-~~GG~v~gs-~~li~~l~~~---~~~------------~~~s~s~~P~~~aaalaaL~~ 413 (430)
- .-|+.+-|| +|.+. ..||+|+.+ +++.+.++.. ... ..+..-+++++++.++..|+.
T Consensus 162 ~---~gd~~~fSf~~~K~i~~geGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~ 238 (363)
T PF01041_consen 162 S---FGDIAIFSFHPTKIITTGEGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKR 238 (363)
T ss_dssp S---SSSEEEEESSTTSSS-SSS-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHT
T ss_pred C---CCCceEecCCCCCCCcCCCCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHH
Confidence 1 127777888 58885 357887774 6666666542 211 123456899999988888877
Q ss_pred HHcc
Q psy2206 414 IMGL 417 (430)
Q Consensus 414 l~~~ 417 (430)
+.+.
T Consensus 239 L~~~ 242 (363)
T PF01041_consen 239 LDEI 242 (363)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 7443
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00011 Score=75.04 Aligned_cols=104 Identities=19% Similarity=0.256 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEE-cCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVV-EGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~-E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
.++++++..+. +.++||. =+.| -...|+++++++|++.|++|++|=||=.|+.-. |. +.
T Consensus 155 yD~~~k~a~e~------------kPK~ii~G~SaY---~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~---G~--~p 214 (413)
T COG0112 155 YDEVEKLAKEV------------KPKLIIAGGSAY---SRPIDFKRFREIADEVGAYLMVDMAHVAGLIAG---GV--HP 214 (413)
T ss_pred HHHHHHHHHHh------------CCCEEEECcccc---ccccCHHHHHHHHHHhCceEEehHHHHHHHHhc---cc--CC
Confidence 58888887774 2334444 3445 456789999999999999999999998887531 22 22
Q ss_pred CCCCCCccEEEeCccchh-ccccceeecCH-HHHHHHHhcCCcccccC
Q psy2206 352 GIDPREVDILMGTYTKSF-GSMGGYVAGSK-STIDYIRANSHVRSYAT 397 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~-G~~GG~v~gs~-~li~~l~~~~~~~~~s~ 397 (430)
..- ...||+++|.+|+| |..||.|.++. ++.+.+...-.+-+.+.
T Consensus 215 ~P~-~~AdvVTtTTHKTlrGPrGG~Il~~~eel~kkin~aVFPg~qgg 261 (413)
T COG0112 215 NPL-PHADVVTTTTHKTLRGPRGGIILTNDEELAKKINSAVFPGLQGG 261 (413)
T ss_pred CCC-CccceEeCCcccCCCCCCceEEEeccHHHHHHhhhhcCCccCCC
Confidence 222 24799999999999 77899999985 88888877444433333
|
|
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=97.78 E-value=6.9e-05 Score=76.77 Aligned_cols=119 Identities=18% Similarity=0.123 Sum_probs=81.4
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccccce
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGY 375 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~ 375 (430)
++++|.+-..-+.+|.+.|+++| ++++|++++||=++++|.. .++.+++|+++.|-.|.+|.+||.
T Consensus 128 ~~~lV~~~h~et~tG~~~pi~~I---~~~~g~~~iVDavqs~g~~-----------~idv~~~D~~~~s~~K~lg~~~Gl 193 (361)
T TIGR01366 128 GVDVIAWAHNETSTGVAVPVRRP---EGSDDALVVIDATSGAGGL-----------PVDIAETDVYYFAPQKNFASDGGL 193 (361)
T ss_pred CCCEEEEcccCCccceecccccc---cccCCCeEEEEcCccccCC-----------CCCHHHCCEEEEEchhhcCCCCce
Confidence 45678888888889999999887 5889999999999987632 223235799999999999988754
Q ss_pred --eecCHHHHHHHHhcCCc------cc------------c-cCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 376 --VAGSKSTIDYIRANSHV------RS------------Y-ATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 376 --v~gs~~li~~l~~~~~~------~~------------~-s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
++.++++++.+...... +. . ...++.....+..++++.++++.+.+...+|.+
T Consensus 194 ~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~ 267 (361)
T TIGR01366 194 WLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTA 267 (361)
T ss_pred EEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 34588877666532110 10 0 122344445567789999988755555545443
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00022 Score=73.38 Aligned_cols=134 Identities=14% Similarity=0.170 Sum_probs=92.3
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCC
Q psy2206 266 ALCSPSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGR 345 (430)
Q Consensus 266 g~~~sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr 345 (430)
|...-....|++.++.+.. .-.+=|..+=|.+++++ ++++++++|++|++.+|+|.+-+.-+- .-.
T Consensus 139 G~tn~t~~~d~~~AIne~t-----------a~llkV~s~~~~f~~~l-~~~~l~~ia~~~~lpvivD~aSg~~v~--~e~ 204 (395)
T COG1921 139 GTTNRTHLKDYELAINENT-----------ALLLKVHSSNYGFTGML-SEEELVEIAHEKGLPVIVDLASGALVD--KEP 204 (395)
T ss_pred cccCcCCHHHHHHHhccCC-----------eeEEEEeeccccccccc-cHHHHHHHHHHcCCCEEEecCCccccc--ccc
Confidence 3333444789998887621 22344455544455554 788999999999999999998543321 111
Q ss_pred ccceecCCCCCCccEEEeCccchhc-cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 346 GVTEYFGIDPREVDILMGTYTKSFG-SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 346 G~~e~~g~~~~~~dIv~~TlSKa~G-~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
+.-+.+. ..+|+++.|-.|.|| ..+|+|+|.+++|+.+++.... +.--..+..+++..++|+.+...+
T Consensus 205 ~l~~~la---~GaDLV~~SgdKllgGPqaGii~GkKelI~~lq~~~l~--Ralrv~K~tla~l~~aLe~y~~~~ 273 (395)
T COG1921 205 DLREALA---LGADLVSFSGDKLLGGPQAGIIVGKKELIEKLQSHPLK--RALRVDKETLAALEAALELYLQPE 273 (395)
T ss_pred chhHHHh---cCCCEEEEecchhcCCCccceEechHHHHHHHHhhhhh--hhhhcCcHhHHHHHHHHHHHcCch
Confidence 2222222 356999999999996 5679999999999998875433 344456778888999999997764
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00019 Score=71.09 Aligned_cols=109 Identities=20% Similarity=0.221 Sum_probs=75.7
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
.+.+|++.-+-+++|.+.. +..|-+||++||+.|++|.||+..+=+=.-.-....|+ +..|.+.||||. |.+
T Consensus 179 ~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~~w~----~NiilC~SLSK~-GLP 253 (417)
T COG3977 179 STGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATPLWN----ENIILCMSLSKL-GLP 253 (417)
T ss_pred ccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceecccccccCC----CCEEEEeehhhc-CCC
Confidence 5667888888999999875 77888889999999999999986642110011112232 346889999997 778
Q ss_pred c---ceeecCHHHHHHHHhcCC-cccccCCCcHHHHHHHHH
Q psy2206 373 G---GYVAGSKSTIDYIRANSH-VRSYATSMPPPVAMQILT 409 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~~-~~~~s~s~~P~~~aaala 409 (430)
| |.+++++++++.+.+... -....+.+.|+.++-+++
T Consensus 254 G~R~GIiIane~viqaitnmn~iisLap~~~G~Aia~~mie 294 (417)
T COG3977 254 GSRCGIIIANEKVIQAITNMNGIISLAPGRMGPAIAAEMIE 294 (417)
T ss_pred CcceeEEEccHHHHHHHHhccceeeecCCCccHHHHHHHhh
Confidence 8 999999999999987431 112234455555554443
|
|
| >KOG2862|consensus | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00066 Score=67.66 Aligned_cols=145 Identities=19% Similarity=0.263 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhCCCC-------CCCCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC-HHHHHHHHH
Q psy2206 252 CTERSKESVKQSGCAL-------CSPSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR-LPEIVRLKN 323 (430)
Q Consensus 252 v~~a~~~ai~~yG~g~-------~~sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~-L~~I~~La~ 323 (430)
.-+.+.+..++||... |.+-..+++++.|.++ +..+|++--.-|-+|.+.| ++.+-++|+
T Consensus 103 wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh------------~p~~vfv~hgdsSTgV~q~~~~~~g~lc~ 170 (385)
T KOG2862|consen 103 WGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQH------------KPKAVFVTHGDSSTGVLQDLLAISGELCH 170 (385)
T ss_pred HHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhc------------CCceEEEEecCccccccchHHHHHHHHhh
Confidence 4567888999999733 2222268899888874 2335555556667899999 888889999
Q ss_pred hcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc--ceeecCHHHHHHHHhcCCc---------
Q psy2206 324 KYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG--GYVAGSKSTIDYIRANSHV--------- 392 (430)
Q Consensus 324 ~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G--G~v~gs~~li~~l~~~~~~--------- 392 (430)
+|+++|+||-+-++|. +.|-++...+|+....--|++|.+- +.|+.|+...+.++.....
T Consensus 171 k~~~lllVD~VaSlgg---------t~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~ 241 (385)
T KOG2862|consen 171 KHEALLLVDTVASLGG---------TEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYFDIL 241 (385)
T ss_pred cCCeEEEEechhhcCC---------ccceehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEEeHH
Confidence 9999999999987652 1233333456888888889998765 5677888877777753220
Q ss_pred ------------ccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 393 ------------RSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 393 ------------~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
-.|-.++|........+||..|.++
T Consensus 242 ~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~ee 278 (385)
T KOG2862|consen 242 RLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEE 278 (385)
T ss_pred hhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHH
Confidence 1122234455566677789888665
|
|
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=6.6e-05 Score=77.67 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=39.6
Q ss_pred CCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCcccc
Q psy2206 92 GTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIA 138 (430)
Q Consensus 92 g~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g 138 (430)
+.++.++||+|||||||+ +||.+++++.+++++||.++++|+...+
T Consensus 51 ~~g~~~~~~~~~~YL~l~-~~p~v~~a~~~~~~~~~~~~~~s~~~~~ 96 (407)
T PRK07179 51 TPGPDAIILQSNDYLNLS-GHPDIIKAQIAALQEEGDSLVMSAVFLH 96 (407)
T ss_pred CCCCcEEEeecCCccCCC-CCHHHHHHHHHHHHHhCCCCCccccccC
Confidence 455689999999999999 6999999999999999988876665443
|
|
| >KOG0634|consensus | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00035 Score=72.11 Aligned_cols=130 Identities=18% Similarity=0.230 Sum_probs=89.8
Q ss_pred HHHHHHHHhCCCCCCCC------CHHHHHHHHHHHhhc--CCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHH
Q psy2206 255 RSKESVKQSGCALCSPS------APSSLEAGLQKALLE--GQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKN 323 (430)
Q Consensus 255 a~~~ai~~yG~g~~~sr------~~~~Le~~L~~~~~~--~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~ 323 (430)
+|.+.++..|+..-... .|+.|++++...... +.| ...++..+.+-.+++|.... -++|.+||+
T Consensus 160 ~AL~s~~a~gv~~ipv~md~~Gi~pE~l~~il~~w~~~~~k~~-----~p~vlYTIPTgqNPTG~tls~errk~iy~LAr 234 (472)
T KOG0634|consen 160 SALQSMEALGVKIIPVKMDQDGIDPESLEEILSNWKPGSYKKP-----KPHVLYTIPTGQNPTGNTLSLERRKKIYQLAR 234 (472)
T ss_pred HHHHhccccCceEEeccccCCCCCHHHHHHHHhcCCcccccCC-----CCeEEEeCcCCCCCCCCccCHHHHHHHHHHHH
Confidence 34555555564322111 189999999875321 222 24677888888999999887 578999999
Q ss_pred hcCcEEEEeccccccccCCC-C---------C--c-----cceecCCCCCCccEEEeCccchhcccc---ceeecCHHHH
Q psy2206 324 KYKAYLYVDEAHSIGALGPT-G---------R--G-----VTEYFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTI 383 (430)
Q Consensus 324 ~y~~~LivDEAh~~G~lG~~-G---------r--G-----~~e~~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li 383 (430)
+||+++|-||.|.+.-++.- + . - +.....++-+...|-+.||||-++ +| ||+.+++.++
T Consensus 235 KyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiia-PGlRlG~it~~~~~l 313 (472)
T KOG0634|consen 235 KYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIA-PGLRLGWITGNSLFL 313 (472)
T ss_pred HcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhc-CcceeEEeecCHHHH
Confidence 99999999999987666520 0 0 0 112234444567899999999985 44 9999999888
Q ss_pred HHHHhcC
Q psy2206 384 DYIRANS 390 (430)
Q Consensus 384 ~~l~~~~ 390 (430)
+.+...+
T Consensus 314 ~ril~~a 320 (472)
T KOG0634|consen 314 KRILDLA 320 (472)
T ss_pred HHHhhhc
Confidence 8776644
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00036 Score=73.43 Aligned_cols=104 Identities=12% Similarity=0.151 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCC-CCcc---cCHHHHHHHHHhcCcEEEEeccccccc--c------
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSM-DGSI---VRLPEIVRLKNKYKAYLYVDEAHSIGA--L------ 340 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm-~G~i---~~L~~I~~La~~y~~~LivDEAh~~G~--l------ 340 (430)
+++||++|++.. +.+..+|.++-..+. .|.. +++++|.++|++||+.|+.|=||.++- +
T Consensus 156 ~~~Le~aI~~~~---------~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~ 226 (450)
T TIGR02618 156 LKKLQKLIDEVG---------ADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQ 226 (450)
T ss_pred HHHHHHHhcccc---------CcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccc
Confidence 677888876421 112234444444443 4676 458999999999999999999998742 2
Q ss_pred CCCCCccc----eecCCCCCCccEEEeCccchhcc-ccceee-cCHHHHHHHHhc
Q psy2206 341 GPTGRGVT----EYFGIDPREVDILMGTYTKSFGS-MGGYVA-GSKSTIDYIRAN 389 (430)
Q Consensus 341 G~~GrG~~----e~~g~~~~~~dIv~~TlSKa~G~-~GG~v~-gs~~li~~l~~~ 389 (430)
|..+..+. +.+ ...|..+.|..|.++. +||+++ .++++++.++..
T Consensus 227 g~~~~~i~ei~~e~~----~~aD~~~~S~~Kd~~~~~GG~l~~~d~~l~~k~r~~ 277 (450)
T TIGR02618 227 GYEDKSIAEILKEMM----SYADGCTMSGKKDCLVNIGGFLCMNDDEMFQSAKEL 277 (450)
T ss_pred cccCCCHHHHHHHHh----ccCcEEEEeeccCCCCCCceEEEeCCHHHHHHHHHH
Confidence 12222221 112 1358889999998875 499998 789999888765
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0011 Score=70.00 Aligned_cols=104 Identities=16% Similarity=0.181 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCC-CCccc---CHHHHHHHHHhcCcEEEEecccccc---cc-----
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSM-DGSIV---RLPEIVRLKNKYKAYLYVDEAHSIG---AL----- 340 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm-~G~i~---~L~~I~~La~~y~~~LivDEAh~~G---~l----- 340 (430)
+++||++|++.. +.++.+|.++-..+. .|... ++++|.++|++||+.|+.|=||.+| ++
T Consensus 163 ~d~Le~~I~~~~---------~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~ 233 (460)
T PRK13237 163 LDKLQALIDEVG---------AENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREE 233 (460)
T ss_pred HHHHHHHhcccc---------CCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhccccc
Confidence 677888876421 112223333322233 35544 6899999999999999999999877 22
Q ss_pred CCCCCccc----eecCCCCCCccEEEeCccchhccc-cceeec-CHHHHHHHHhc
Q psy2206 341 GPTGRGVT----EYFGIDPREVDILMGTYTKSFGSM-GGYVAG-SKSTIDYIRAN 389 (430)
Q Consensus 341 G~~GrG~~----e~~g~~~~~~dIv~~TlSKa~G~~-GG~v~g-s~~li~~l~~~ 389 (430)
|-.|+.+. |.+ .-.|+++.|++|.++.. ||+|+. ++++++.++..
T Consensus 234 ~y~~~~i~ei~~e~~----s~aD~~t~S~~K~~~~~~GG~i~t~D~eL~~~~r~~ 284 (460)
T PRK13237 234 GYQDKSIKEIVHEMF----SYADGCTMSGKKDCLVNIGGFLAMNDEELFDEAKEL 284 (460)
T ss_pred ccCCCcHhHHhhhcc----CcCcEEEEeCCCCCCCCCceEEEECCHHHHHHHHHh
Confidence 11122211 111 13489999999988754 888765 68888888875
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0027 Score=65.65 Aligned_cols=102 Identities=18% Similarity=0.157 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcC-----cEEEEeccccccccCCCCCcc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYK-----AYLYVDEAHSIGALGPTGRGV 347 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~-----~~LivDEAh~~G~lG~~GrG~ 347 (430)
+++|+++|++.. .++++|++-...+++|.+.|+++|.++|++|| +++-||=|++.+.+--...
T Consensus 148 ~~~L~~~i~~~~----------~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~-- 215 (374)
T PLN03032 148 YDDLERALAKNR----------DKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSR-- 215 (374)
T ss_pred HHHHHHHHHHcC----------CCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCC--
Confidence 789999987621 13556666677788999999999999999996 5899999987654310000
Q ss_pred ceecCCCCCCccEEEeCccchhc-ccc-ceeecCHHHHHHHH
Q psy2206 348 TEYFGIDPREVDILMGTYTKSFG-SMG-GYVAGSKSTIDYIR 387 (430)
Q Consensus 348 ~e~~g~~~~~~dIv~~TlSKa~G-~~G-G~v~gs~~li~~l~ 387 (430)
...+... ..+|-+..+.+|-+| ..| |++..++..++.+.
T Consensus 216 ~~~~~~~-~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~~ 256 (374)
T PLN03032 216 APEVTFR-KPIGSVSVSGHKFLGCPMPCGVALTRKKHVKALS 256 (374)
T ss_pred CcccCCC-cCCcEEEECcccccCCCcCeEEEEEEchhhHhhc
Confidence 0111222 247889999999888 445 77777776665543
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00049 Score=70.58 Aligned_cols=112 Identities=14% Similarity=0.129 Sum_probs=75.5
Q ss_pred EEEEcCccCCCCccc-CHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-cee
Q psy2206 299 LIVVEGIFSMDGSIV-RLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-GYV 376 (430)
Q Consensus 299 lIi~E~v~sm~G~i~-~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G~v 376 (430)
+|.+-..-+.+|.+. |+++| ||++++||=++++|.. .++.++.|+++.|-.|++|.+| |++
T Consensus 144 ~V~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~-----------~idv~~~d~~~~ssqK~lgP~Glg~l 206 (360)
T PRK05355 144 YVHYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSR-----------PIDVSKFGLIYAGAQKNIGPAGLTIV 206 (360)
T ss_pred EEEEccCCCcceEecCccccc------CCCcEEEEcCccccCc-----------cCCHHHccEEEEeccccccCCceEEE
Confidence 455544555578887 67766 8999999999987632 2333455799999999999888 899
Q ss_pred ecCHHHHHHHHhc-C----------CcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 377 AGSKSTIDYIRAN-S----------HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 377 ~gs~~li~~l~~~-~----------~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
..++++++.+... . ....+ .+++-..+.+..++|+.+.++.+.+...++.+
T Consensus 207 ~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~-~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~ 268 (360)
T PRK05355 207 IVREDLLGRALPSIPSMLDYKTHADNDSMY-NTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQ 268 (360)
T ss_pred EECHHHHhhcccCCChHHHHHHHHhcCCcc-CCCcHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9999888765441 1 11112 23555566677889999976634555554433
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00053 Score=78.60 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++.+. ..++++|++-.+.+..|.+.|+++|+++|+++|+++++|=|+..+..+..- ...
T Consensus 653 le~L~~~i~~~----------~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~---p~~-- 717 (993)
T PLN02414 653 IEELRKAAEAH----------KDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTS---PGF-- 717 (993)
T ss_pred HHHHHHHHhcc----------CCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCC---ccc--
Confidence 57888887642 125678888888888899999999999999999999999999876543211 112
Q ss_pred CCCCCccEEEeCccchhcc------cc-ceeecCHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGS------MG-GYVAGSKSTIDYIR 387 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~------~G-G~v~gs~~li~~l~ 387 (430)
..+||+++|.+|+|+. +| |+++.++.++.++-
T Consensus 718 ---~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lP 756 (993)
T PLN02414 718 ---IGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLP 756 (993)
T ss_pred ---cCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCC
Confidence 2469999999998852 22 78888887776554
|
|
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.003 Score=62.06 Aligned_cols=86 Identities=17% Similarity=0.293 Sum_probs=68.6
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc--
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-- 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-- 373 (430)
...+.++-.+-+..|.++|-+.+.++|++|++.|++.=||+.|-+.-+++ + -..|++++|-+|++++.|
T Consensus 156 ~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~k--------e-~g~DFiVgSGHKsmAAs~Pi 226 (382)
T COG1103 156 PPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGK--------E-IGADFIVGSGHKSMAASAPI 226 (382)
T ss_pred CceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeecccccccc--------c-cCCCEEEecCccchhccCCe
Confidence 35677777788888999999999999999999999999998776532222 2 245899999999998655
Q ss_pred ceeecCHHHHHHHHhcC
Q psy2206 374 GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 374 G~v~gs~~li~~l~~~~ 390 (430)
|.++.+.+..+.+-..+
T Consensus 227 Gvl~~~eE~ae~V~r~S 243 (382)
T COG1103 227 GVLAMSEEWAEIVLRRS 243 (382)
T ss_pred eEEeehhHHHHHHHhhc
Confidence 99999999887665433
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0011 Score=75.08 Aligned_cols=113 Identities=12% Similarity=0.164 Sum_probs=78.7
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhc--------CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKY--------KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTK 367 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y--------~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSK 367 (430)
++++|++..+.+.+|.+.|+++|.++++.. +++++||=||++|.+- ..+...++|+++.|+.|
T Consensus 192 ~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~p---------iDv~~~~~Dfl~~S~HK 262 (805)
T PLN02724 192 AYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSP---------PDLSRYPADFVVVSFYK 262 (805)
T ss_pred CcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCC---------CChhhcCCCEEEEecce
Confidence 457999999999999999999775555532 3679999999876431 12222356999999999
Q ss_pred hhc-ccc-ceeecCHHHHHHHHhcCCc------------c----------cccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 368 SFG-SMG-GYVAGSKSTIDYIRANSHV------------R----------SYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 368 a~G-~~G-G~v~gs~~li~~l~~~~~~------------~----------~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
-+| ..| |++..++++++.+.....+ + .-..+++.+.++++.++++.+.+-
T Consensus 263 ~~GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~i 336 (805)
T PLN02724 263 IFGYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRL 336 (805)
T ss_pred eccCCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHh
Confidence 998 445 8888888887766532110 0 012345666677777889888653
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00069 Score=69.09 Aligned_cols=116 Identities=12% Similarity=0.064 Sum_probs=76.4
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-ce
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-GY 375 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G~ 375 (430)
+.+|.+-..-+.+|.+.+ ++++.||++++||=++++|.+ .++.++.|+.+.|-.|.+|.+| |+
T Consensus 139 ~~lV~~~h~~t~tG~~~~-----~i~~~~g~~~~VDa~qs~g~~-----------~idv~~~~~~~ss~~K~lGP~G~g~ 202 (355)
T cd00611 139 AAYVHYCSNETIHGVEFD-----EVPDTGGVPLVADMSSNILSR-----------PIDVSKFGVIYAGAQKNLGPAGVTV 202 (355)
T ss_pred CCEEEEeCCcccccEEcc-----eecccCCCeEEEEccccccCC-----------CCCHHHhCEEEeecccccCCCceEE
Confidence 456777777777888632 455669999999999987643 2333345677777899999888 89
Q ss_pred eecCHHHHHHHHhcCCccc----------ccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 376 VAGSKSTIDYIRANSHVRS----------YATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 376 v~gs~~li~~l~~~~~~~~----------~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
+..++++++.+......+. ...+++...+.+..++|+.+.++.+.+...++.+
T Consensus 203 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~ 265 (355)
T cd00611 203 VIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNR 265 (355)
T ss_pred EEECHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999988876543211110 0123445556677789999976645555555443
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0024 Score=65.94 Aligned_cols=120 Identities=23% Similarity=0.264 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
++.||+.|.+ +++.||.=.+| |..+++++|.+||++||++||-|=||++|..-+ |+.+ ..+|
T Consensus 112 ~~~ie~aIt~-------------~tKAIipVhl~---G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~-gk~v-Gt~G 173 (374)
T COG0399 112 PDLIEAAITP-------------RTKAIIPVHLA---GQPCDMDAIMALAKRHGLPVIEDAAQAHGATYK-GKKV-GSFG 173 (374)
T ss_pred HHHHHHHccc-------------CCeEEEEehhc---cCCCCHHHHHHHHHHcCCeEEEEcchhccCeec-Cccc-cccc
Confidence 5778877764 23444444454 889999999999999999999999999887321 2211 1222
Q ss_pred CCCCCccEEEeCc--cchhcc-ccceeecC-HHHHHHHH---hcCCc-----------ccccCCCcHHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTY--TKSFGS-MGGYVAGS-KSTIDYIR---ANSHV-----------RSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 353 ~~~~~~dIv~~Tl--SKa~G~-~GG~v~gs-~~li~~l~---~~~~~-----------~~~s~s~~P~~~aaalaaL~~l 414 (430)
|+.+-|| .|-+++ -||+++.+ +++++.++ .+... .-|..-++-+++|-.+.-|+.+
T Consensus 174 ------d~~~fSF~~~K~ittgEGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N~rm~~iqAAigl~QL~~l 247 (374)
T COG0399 174 ------DIGAFSFHATKNLTTGEGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYNYRLTEIQAAIGLAQLERL 247 (374)
T ss_pred ------ceEEEEecCCCCccccCceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccccCHHHHHHHHHHHHHHHH
Confidence 3444444 366644 58888764 56665544 33332 2245567778888778878777
Q ss_pred Hc
Q psy2206 415 MG 416 (430)
Q Consensus 415 ~~ 416 (430)
.+
T Consensus 248 ~~ 249 (374)
T COG0399 248 DE 249 (374)
T ss_pred HH
Confidence 43
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0013 Score=66.71 Aligned_cols=129 Identities=21% Similarity=0.139 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccce
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE 349 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e 349 (430)
+++|++.++.. +.|. ..+.++++|+-....|.+.| |++|.++|++||+.|-+|-|-=.-.+-..|.-. .
T Consensus 114 ~e~v~~~i~~~------d~~~-~~~~~~~~e~~~te~GtVy~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~-~ 185 (342)
T COG2008 114 PEDVEAAIRPD------DIHH-APTPLAVLENTATEGGTVYPLDELEAISAVCKEHGLPLHMDGARLANALVALGVAL-K 185 (342)
T ss_pred HHHHHHhhcCC------Cccc-CCCceEEEeeccCCCceecCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCH-H
Confidence 47777776542 1121 13557777777767799998 667778899999999999874211111111111 1
Q ss_pred ecCCCCCCccEEEeCccchhccccc-eeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 350 YFGIDPREVDILMGTYTKSFGSMGG-YVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 350 ~~g~~~~~~dIv~~TlSKa~G~~GG-~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
.+. ..+|++.-++||..+.++| .++++.++++.++.....+-...+-.-+.+++.+..|+
T Consensus 186 ~~~---~~~D~v~~~~tK~g~~~~gAiv~gn~~~~~~a~~~rK~~Ggl~~k~r~laA~~~~~l~ 246 (342)
T COG2008 186 TIK---SYVDSVSFCLTKGGGAPVGAIVFGNRDFAKRARRWRKRAGGLMRKARFLAAQGLYALE 246 (342)
T ss_pred HHH---hhCCEEEEecccCCcceeeeEEEcCHHHHHHHHHHHHHhcccHhhhhHHHHHHHHHHh
Confidence 121 3468999999999987765 56789999876654322211111123344555555553
|
|
| >KOG1368|consensus | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00069 Score=67.18 Aligned_cols=131 Identities=21% Similarity=0.243 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCC-cccCHH---HHHHHHHhcCcEEEEeccccccccCCCCCccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDG-SIVRLP---EIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G-~i~~L~---~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~ 348 (430)
.+++|+.++.. ..+.|.| .+.+|.+|.-....| .+.||+ +|-+||++||+-|=+|-|.-+-.--..|-++-
T Consensus 136 ledIe~~ir~~----~GD~H~p-~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk 210 (384)
T KOG1368|consen 136 LEDIEAAIRVP----KGDCHMP-PTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVK 210 (384)
T ss_pred HHHHHHhhcCC----CCCccCC-CceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHH
Confidence 58888887642 1133444 467999999888777 777855 55677899999999988742211111222322
Q ss_pred eecCCCCCCccEEEeCccchhcc-ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 349 EYFGIDPREVDILMGTYTKSFGS-MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 349 e~~g~~~~~~dIv~~TlSKa~G~-~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
+... ..|=+--.|||++|. .|..++|++++|+..+.......-+---+-+.||+++.+|+
T Consensus 211 ~i~~----~fDSVsiCLSKglgAPVGSViVG~k~FI~kA~~~RKalGGGmRQsGvLaaaaLval~ 271 (384)
T KOG1368|consen 211 KICS----AFDSVSICLSKGLGAPVGSVIVGSKDFIDKARHFRKALGGGMRQSGVLAAAALVALD 271 (384)
T ss_pred HHHH----hhhhhhhhhhccCCCCcccEEEccHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhh
Confidence 2111 124455689999986 57788999999976554333322222235567777777765
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.00098 Score=66.70 Aligned_cols=59 Identities=22% Similarity=0.366 Sum_probs=50.7
Q ss_pred CcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCccccc
Q psy2206 64 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIAS 139 (430)
Q Consensus 64 rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~ 139 (430)
||..+.+|++|...++ ++|+|+|||+||+. .+|.+.+++.+++++||.+.++++...|.
T Consensus 1 ~~~~~~~~~~~~~~g~----------------~~id~~~~~~~g~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~g~ 59 (360)
T TIGR00858 1 RPLDRGPGPEVVRDGR----------------RLLNFSSNDYLGLA-SHPEVIQAAQQGAEQYGAGSTASRLVSGN 59 (360)
T ss_pred CCcccCCCCeEEECCc----------------eEEecccCCcccCC-CCHHHHHHHHHHHHhcCCCCCCcCcccCC
Confidence 6889999999986554 89999999999998 58999999999999999887777665554
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.005 Score=66.40 Aligned_cols=105 Identities=21% Similarity=0.176 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEecccccccc-CCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGAL-GPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~l-G~~GrG~~e~~ 351 (430)
+++|+++|++....+ .+.++|+.-.--+.+|.+.||++|.++|++||+++.||=||+.+.+ -+..+.. ..
T Consensus 249 ~~~L~~~i~~~~~~g-------~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~--l~ 319 (522)
T TIGR03799 249 VDALRDKCAELAEQN-------IKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHL--LK 319 (522)
T ss_pred HHHHHHHHHHHHHCC-------CCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHH--hc
Confidence 799999997643111 1233333333344689999999999999999999999999874432 1111110 12
Q ss_pred CCCCCCccEEEeCccchh-cccc-ceeec-CHHHHHHHHh
Q psy2206 352 GIDPREVDILMGTYTKSF-GSMG-GYVAG-SKSTIDYIRA 388 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~-G~~G-G~v~g-s~~li~~l~~ 388 (430)
++ ..+|.++.+.+|.+ +..| |++.. ++++.+.+..
T Consensus 320 gl--e~aDSit~d~HK~l~~P~g~G~llvr~~~~~~~~~~ 357 (522)
T TIGR03799 320 GI--ERADSVTIDAHKQLYVPMGAGMVLFKDPALMSAIEH 357 (522)
T ss_pred Cc--hhCCEEEEChhhcCCcCcccEEEEEeCHHHHHHhcc
Confidence 23 25799999999955 4444 66544 4566554443
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0018 Score=66.20 Aligned_cols=113 Identities=15% Similarity=0.095 Sum_probs=75.4
Q ss_pred EEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-ceee
Q psy2206 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-GYVA 377 (430)
Q Consensus 299 lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G~v~ 377 (430)
+|.+-..-+.+|...| ++++.|+++++||=++++|.. .++.++.|+++.|-.|++|.+| |++.
T Consensus 133 ~v~~th~ETstGv~~~-----~l~~~~~~l~iVDavss~g~~-----------~id~~~~d~~~~ssqK~lgP~Glg~l~ 196 (349)
T TIGR01364 133 YVHYCANETIHGVEFR-----ELPDVKNAPLVADMSSNILSR-----------PIDVSKFGLIYAGAQKNIGPAGLTVVI 196 (349)
T ss_pred EEEEcCCCCcccEecc-----eecccCCCeEEEEccccccCc-----------cCCHHHccEEEEecccccCCCceEEEE
Confidence 4444444444677655 667778999999999987642 2333456799999999999888 8999
Q ss_pred cCHHHHHHHHhcCCc-----------ccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 378 GSKSTIDYIRANSHV-----------RSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 378 gs~~li~~l~~~~~~-----------~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
.++++++.+...... ..+ .+++-..+.+..++|+.+.++.+.+...++.+
T Consensus 197 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~ 257 (349)
T TIGR01364 197 VRKDLLGRASRITPSMLNYKIHAENDSMY-NTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQ 257 (349)
T ss_pred ECHHHHhhcccCCCCcchHHHHHhcCCCC-CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999988765332111 111 23455556667789999977645565555544
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0038 Score=65.72 Aligned_cols=89 Identities=16% Similarity=0.042 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhc------CcEEEEeccccccc----cCC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKY------KAYLYVDEAHSIGA----LGP 342 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y------~~~LivDEAh~~G~----lG~ 342 (430)
+++|+++|.+ ++++|++-.+.+++|.+.|+++|.++|++| ++++.||=|++.++ .++
T Consensus 176 ~~~L~~~i~~-------------~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~ 242 (431)
T TIGR01788 176 PEQVVEAVDE-------------NTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPD 242 (431)
T ss_pred HHHHHHHHhh-------------CCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCC
Confidence 7888888865 356888888999999999999999999999 99999999998443 222
Q ss_pred CCCccceecCCCCCCccEEEeCccchh-cccc-ceeecCH
Q psy2206 343 TGRGVTEYFGIDPREVDILMGTYTKSF-GSMG-GYVAGSK 380 (430)
Q Consensus 343 ~GrG~~e~~g~~~~~~dIv~~TlSKa~-G~~G-G~v~gs~ 380 (430)
. ...+. ...+|-+.-|.+|-+ |..| |++...+
T Consensus 243 ~----~~~~~--~~~~DSis~s~HK~~~~P~g~G~l~~r~ 276 (431)
T TIGR01788 243 L----EWDFR--LPRVKSINVSGHKYGLVYPGVGWVIWRD 276 (431)
T ss_pred c----hhhcC--CCCceEEEECchhccCCCCCcEEEEEeC
Confidence 1 11122 246788999999965 7776 7766543
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0027 Score=72.33 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC-HHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR-LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~-L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
+++|++++.++ ..++++|++-.+.+ .|.+.| +++|+++|+++|+++++|=|+..+..+ +. ..
T Consensus 615 le~L~~~i~~~----------~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~-----l~-~P 677 (939)
T TIGR00461 615 LVDLKNKAEQH----------GDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVG-----LT-SP 677 (939)
T ss_pred HHHHHHHHhhc----------CCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecChhhCCC-----CC-Cc
Confidence 47888888652 12456666655544 688877 999999999999999999999654322 11 11
Q ss_pred CCCCCCccEEEeCccchhcc------cc-ceeecCHHHHHHHH
Q psy2206 352 GIDPREVDILMGTYTKSFGS------MG-GYVAGSKSTIDYIR 387 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~------~G-G~v~gs~~li~~l~ 387 (430)
+- ..+||+++|.+|+|+. +| |+++..+.+..++-
T Consensus 678 g~--~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lP 718 (939)
T TIGR00461 678 GD--LGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLP 718 (939)
T ss_pred cc--cCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcC
Confidence 11 2569999999998862 33 78888877665543
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0055 Score=61.63 Aligned_cols=79 Identities=23% Similarity=0.364 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
|.++++.+.+ ...+|.+.+|.--+|...++.+|-++++++|++++.|=||+.|.+.- +
T Consensus 156 P~~~~~~~~d-------------d~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~------~--- 213 (407)
T COG3844 156 PRALEEAITD-------------DVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPV------D--- 213 (407)
T ss_pred hHHHHHhhcc-------------ceEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCcce------e---
Confidence 7777777654 57899999998889999999999999999999999999999987632 1
Q ss_pred CCCCCccEEEeCccchh-cccc
Q psy2206 353 IDPREVDILMGTYTKSF-GSMG 373 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~-G~~G 373 (430)
+....+|..+++--|.+ |.+|
T Consensus 214 Lh~~gaDfaigcsyKYLNgGPG 235 (407)
T COG3844 214 LHAAGADFAIGCSYKYLNGGPG 235 (407)
T ss_pred ecccCCCeeeeeeceeccCCCC
Confidence 22245789999999998 4455
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0024 Score=63.83 Aligned_cols=104 Identities=25% Similarity=0.284 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCC-CCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSM-DGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm-~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~ 348 (430)
+++|++.++.... |.+ +..+|.+|...+. .|.+.+ |++|.++|++||+.|.+|=|--.-..-..|..+.
T Consensus 108 ~~~l~~~~~~~~~------h~~-~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~~~~~ 180 (290)
T PF01212_consen 108 PEDLEAAIEEHGA------HHP-QPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALGVSLA 180 (290)
T ss_dssp HHHHHHHHHHHTG------TSG-GEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHHHHHH
T ss_pred HHHHHHHhhhccc------cCC-CccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhcccccHH
Confidence 7889999887421 222 4566666665543 477765 7888888999999999999841111111112223
Q ss_pred eecCCCCCCccEEEeCccchhccc-cceeecCHHHHHHHH
Q psy2206 349 EYFGIDPREVDILMGTYTKSFGSM-GGYVAGSKSTIDYIR 387 (430)
Q Consensus 349 e~~g~~~~~~dIv~~TlSKa~G~~-GG~v~gs~~li~~l~ 387 (430)
+.. ..+|++.-+++|.+|++ |+++++++++++..+
T Consensus 181 e~~----~~~D~v~~~~tK~~g~~~Gavl~~~~~~i~~~~ 216 (290)
T PF01212_consen 181 EIA----AGADSVSFGGTKNGGAPGGAVLAGNKEFIAKAR 216 (290)
T ss_dssp HHH----TTSSEEEEETTSTT-SSSEEEEEESHHHHHHHH
T ss_pred HHh----hhCCEEEEEEEcccccccceEEEechHHHHHHH
Confidence 333 24699999999999874 578899999775443
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.00098 Score=66.62 Aligned_cols=43 Identities=26% Similarity=0.334 Sum_probs=35.9
Q ss_pred ceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCcccc
Q psy2206 95 STCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIA 138 (430)
Q Consensus 95 ~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g 138 (430)
|++||||||+|||.+ +||.++++.++++++|+.+-++.+...|
T Consensus 1 ~~~~~~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~~ 43 (349)
T cd06454 1 KKVLNFCSNDYLGLA-NHPEVIEAAKEALDKYGVGAGGSRLISG 43 (349)
T ss_pred CCceecccCCccccC-CCHHHHHHHHHHHHHhCCCCCCcCeecC
Confidence 479999999999999 5899999999999999876555554433
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0027 Score=65.00 Aligned_cols=129 Identities=19% Similarity=0.269 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCC--cccCHHHHHHHHHhcCcEEEEeccccccc----cCCCCC-
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDG--SIVRLPEIVRLKNKYKAYLYVDEAHSIGA----LGPTGR- 345 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G--~i~~L~~I~~La~~y~~~LivDEAh~~G~----lG~~Gr- 345 (430)
+.|.|+++.+.. .-++-|--+=|.+.| ...+++++++++++|++.+|+|-.-+.-. +|-.+.
T Consensus 126 ~~Dye~AI~e~T-----------a~ll~Vh~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep 194 (367)
T PF03841_consen 126 LSDYEKAITENT-----------AALLKVHTSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEP 194 (367)
T ss_dssp ----------------------------------------------HHHHHHHHHT--EEEE-TTHHHHHHHTT------
T ss_pred cccccccccccc-----------cccccccccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCcccc
Confidence 678888876521 112223335565554 23479999999999999999998642211 111111
Q ss_pred ccceecCCCCCCccEEEeCccchhc-cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 346 GVTEYFGIDPREVDILMGTYTKSFG-SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 346 G~~e~~g~~~~~~dIv~~TlSKa~G-~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
-+.++. ...+|+++-|-.|.+| .+.|+|+|.+++|+.++.+ +..-..-..-..+++..++|+.+..+
T Consensus 195 ~v~~~~---~~GaDlV~fSGdKlLGGPQaGiI~Gkk~lI~~lk~~--pl~RalrvdK~tla~L~atL~~Y~~~ 262 (367)
T PF03841_consen 195 TVQEYL---AAGADLVTFSGDKLLGGPQAGIIVGKKELIEKLKKH--PLGRALRVDKLTLAALEATLRLYLDP 262 (367)
T ss_dssp ----CC---CCT-SEEEEETTSSSSS-S-EEEEEEHHHHHHHHHH--HHTTT-B--HHHHHHHHHHHHH----
T ss_pred HHHHHh---hcCCCEEEEECCCcCCCCCeEEEEeCHHHHHHHhhC--CCcceEeeCHHHHHHHHHHHHHHHHh
Confidence 111222 2467999999999996 4569999999999999874 33333445778888888999988753
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0034 Score=63.56 Aligned_cols=68 Identities=19% Similarity=0.318 Sum_probs=56.5
Q ss_pred HHHHHHHhhhcccCCcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCc
Q psy2206 50 YSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCA 129 (430)
Q Consensus 50 ~~r~l~~r~~d~~~rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~g 129 (430)
..-.||+.+ +.+.+..|++|...+ +++|+|++++++||. .+|.+++++.+++++||.+
T Consensus 15 ~~~~~~~~~-----~~~~~~~g~~~~~~g----------------~~~id~~~~~~~g~~-~~~~v~~a~~~~~~~~~~~ 72 (385)
T PRK05958 15 RAAGLYRSL-----RPREGGAGRWLVVDG----------------RRMLNFASNDYLGLA-RHPRLIAAAQQAARRYGAG 72 (385)
T ss_pred HHcCCCccc-----cccccCCCceeEeCC----------------ceEEEeeCCCcccCC-CCHHHHHHHHHHHHhcCCC
Confidence 334488888 889999999998533 589999999999997 4899999999999999988
Q ss_pred cccCCccccc
Q psy2206 130 LCSPSGEIAS 139 (430)
Q Consensus 130 s~~sr~~~g~ 139 (430)
.++++...|.
T Consensus 73 ~~~~~~~~g~ 82 (385)
T PRK05958 73 SGGSRLVTGN 82 (385)
T ss_pred CCCcCcccCC
Confidence 8777766553
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.024 Score=60.21 Aligned_cols=101 Identities=22% Similarity=0.203 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccce-ec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE-YF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e-~~ 351 (430)
+++|++++.+..+. . +||.-.-..++|.+.|+++|.++|++|++++-||=|++..++ +.-+.... .+
T Consensus 195 ~~~l~~~i~~~t~~---------g--~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~-pf~~~~~~~~f 262 (460)
T COG0076 195 VDALEEAIDENTIG---------G--VVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLL-PFLEPDGRWDF 262 (460)
T ss_pred HHHHHHHHHhhccC---------c--eEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceee-cccCccchhhc
Confidence 78999999874311 1 244444455689999999999999999999999999874432 11111111 24
Q ss_pred CCCCCCccEEEeCccchhcc-cc-ceeec-CH-HHHHHHH
Q psy2206 352 GIDPREVDILMGTYTKSFGS-MG-GYVAG-SK-STIDYIR 387 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~-~G-G~v~g-s~-~li~~l~ 387 (430)
++ ..+|=++.+++|.+.. +| |++.. ++ ++.+.+.
T Consensus 263 ~l--~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~ 300 (460)
T COG0076 263 GL--EGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILI 300 (460)
T ss_pred CC--CCceEEEECcccccCCCCCceEEEEECHHHhhhhhh
Confidence 44 3678889999997643 33 55544 55 3555554
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0043 Score=71.26 Aligned_cols=96 Identities=17% Similarity=0.158 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcc-cCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSI-VRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i-~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
.++|++++.+. ..+.++|++-..... |.+ .|+++|+++|+++|++++||.||..+.++-. ..
T Consensus 627 ~~~L~~~i~~~----------~~~la~V~it~pst~-G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~------~p 689 (954)
T PRK05367 627 LDDLRAKAEEH----------ADNLAAIMITYPSTH-GVFEETIREICEIVHEHGGQVYLDGANMNAQVGLA------RP 689 (954)
T ss_pred HHHHHHHHhcc----------CCCeEEEEEEcCCCC-eeecCCHHHHHHHHHHcCCEEEEECcChhhccCCC------Ch
Confidence 46777777542 113444444444333 554 6899999999999999999999975544311 11
Q ss_pred CCCCCCccEEEeCccchhcc------cc-ceeecCHHHHHHHH
Q psy2206 352 GIDPREVDILMGTYTKSFGS------MG-GYVAGSKSTIDYIR 387 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~------~G-G~v~gs~~li~~l~ 387 (430)
+. ..+|+++++++|.|+. +| |+++..+.+..++.
T Consensus 690 g~--~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lp 730 (954)
T PRK05367 690 GD--IGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLP 730 (954)
T ss_pred hh--cCCCEEEecCcccCCCCcCCCCCceEEEeecccccccCC
Confidence 11 2469999999999863 22 57776666555543
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0066 Score=62.20 Aligned_cols=89 Identities=17% Similarity=0.241 Sum_probs=60.7
Q ss_pred CceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccce-ecCCC----CCCccEEEeCcc
Q psy2206 295 WRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE-YFGID----PREVDILMGTYT 366 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e-~~g~~----~~~~dIv~~TlS 366 (430)
.+.++++-....+|+|.-.. +.+|+++.++.+.+.++|=|| -| || .|+-+ .+++. ...--++..|||
T Consensus 171 ~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AY-QG-F~---~GleeDa~~lR~~a~~~~~~lva~S~S 245 (396)
T COG1448 171 EGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAY-QG-FA---DGLEEDAYALRLFAEVGPELLVASSFS 245 (396)
T ss_pred CCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhh-hh-hc---cchHHHHHHHHHHHHhCCcEEEEehhh
Confidence 46778888889999996543 899999999999999999998 44 32 33321 11110 011168899999
Q ss_pred chhcccc----c--eeecCHHHHHHHHh
Q psy2206 367 KSFGSMG----G--YVAGSKSTIDYIRA 388 (430)
Q Consensus 367 Ka~G~~G----G--~v~gs~~li~~l~~ 388 (430)
|.||+-| + +|+.+++.++.+..
T Consensus 246 KnfgLYgERVGa~~vva~~~~~a~~v~s 273 (396)
T COG1448 246 KNFGLYGERVGALSVVAEDAEEADRVLS 273 (396)
T ss_pred hhhhhhhhccceeEEEeCCHHHHHHHHH
Confidence 9999755 3 34556666655443
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.016 Score=66.12 Aligned_cols=98 Identities=15% Similarity=0.096 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
.++|++++.+. ..+.++|++-.+.+..+-..|+++|+++++++|+++++|=||..+..+- .....
T Consensus 628 le~L~a~I~~~----------~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l---~~Pg~-- 692 (954)
T PRK12566 628 LDDLKAKAAAA----------GDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGL---ARPAD-- 692 (954)
T ss_pred HHHHHHHhhcc----------CCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCC---CChhh--
Confidence 47788887642 1246666666555544445569999999999999999999997543221 10112
Q ss_pred CCCCCccEEEeCccchhccc---c----ceeecCHHHHHHHHh
Q psy2206 353 IDPREVDILMGTYTKSFGSM---G----GYVAGSKSTIDYIRA 388 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~---G----G~v~gs~~li~~l~~ 388 (430)
-++||++++++|+|+.+ | |.++..+.+..+++.
T Consensus 693 ---~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~ 732 (954)
T PRK12566 693 ---IGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVAN 732 (954)
T ss_pred ---cCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccC
Confidence 24599999999999631 2 455555656666663
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0083 Score=63.17 Aligned_cols=99 Identities=20% Similarity=0.186 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCc-cCCCCcccC---HHHHHHHHHhcCcEEEEecccccc-cc-------
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGI-FSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIG-AL------- 340 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v-~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G-~l------- 340 (430)
+++|+++|++. |. .+..++.+.-+ .+..|.+.+ +.++.++|++||+.+.+|=|--+- .+
T Consensus 169 l~~le~~I~~~---g~------~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~ 239 (467)
T TIGR02617 169 LEGLERGIEEV---GP------NNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREA 239 (467)
T ss_pred HHHHHHHHhhc---CC------CCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcch
Confidence 68888888763 11 11222222222 223565555 888899999999999999764211 11
Q ss_pred CCCCCccceec-CCCCCCccEEEeCccchhccc-cceeecCHH
Q psy2206 341 GPTGRGVTEYF-GIDPREVDILMGTYTKSFGSM-GGYVAGSKS 381 (430)
Q Consensus 341 G~~GrG~~e~~-g~~~~~~dIv~~TlSKa~G~~-GG~v~gs~~ 381 (430)
+..+..+.+.. .+ ....|.++.|+||.+|.+ ||+++++++
T Consensus 240 ~a~~~si~eI~rE~-~~~aDsvt~slsKglgApvGg~Lag~d~ 281 (467)
T TIGR02617 240 EYKNWSIEQITRET-YKYADMLAMSAKKDAMVPMGGLLCFKDD 281 (467)
T ss_pred hhcCCCHHHHHHHh-hccCCEEEEEcCCCCCCcccceEEecch
Confidence 22233332221 00 024588999999999875 999999765
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0098 Score=63.67 Aligned_cols=96 Identities=18% Similarity=0.124 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccC-CCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALG-PTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG-~~GrG~~e~~ 351 (430)
+++|++.|++....|. ...+||...=-.++|.+.||++|.++|++||+|+-||=||+.+++- +.-+.. ..
T Consensus 223 ~~~L~~~i~~~~~~g~-------~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~--l~ 293 (490)
T PLN02880 223 PELLSEAISTDLSSGL-------IPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHY--ID 293 (490)
T ss_pred HHHHHHHHHHHHHCCC-------ccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHH--hc
Confidence 7999999987543221 2334444333456799999999999999999999999999866531 111110 12
Q ss_pred CCCCCCccEEEeCccchhccc-c-ceeecC
Q psy2206 352 GIDPREVDILMGTYTKSFGSM-G-GYVAGS 379 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~~-G-G~v~gs 379 (430)
|+ ..+|-++..++|-+..+ | |++..+
T Consensus 294 gi--e~aDSit~d~HKwl~~P~~~g~llvr 321 (490)
T PLN02880 294 GV--EEADSFNMNAHKWFLTNFDCSLLWVK 321 (490)
T ss_pred Cc--hhcCEEEECchhhcCCCccEEEEEEe
Confidence 33 25688999999998653 2 555543
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.01 Score=60.46 Aligned_cols=58 Identities=24% Similarity=0.406 Sum_probs=48.0
Q ss_pred CcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCcccc
Q psy2206 64 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIA 138 (430)
Q Consensus 64 rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g 138 (430)
+.+..+.|.+|.+.++ ++|||++++||||. .+|.+++++.+++++|+...++.+...|
T Consensus 18 ~~~~~~~g~~~~~~g~----------------~~id~~~~~~~g~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~g 75 (385)
T TIGR01825 18 RVLESAQGPRVRVNGK----------------EVINLSSNNYLGFA-DHPRLKEAAAQAIQQYGVGAGAVRTIAG 75 (385)
T ss_pred cccccCCCceEEECCc----------------eEEEeeccCccCCC-CCHHHHHHHHHHHHHcCCCCCccCcccC
Confidence 6788999999986544 89999999999998 5899999999999999876665544444
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.0099 Score=60.79 Aligned_cols=67 Identities=24% Similarity=0.407 Sum_probs=46.1
Q ss_pred ccCHHHHHHHHHhc--CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhc----cccceeecCHHHHHH
Q psy2206 312 IVRLPEIVRLKNKY--KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG----SMGGYVAGSKSTIDY 385 (430)
Q Consensus 312 i~~L~~I~~La~~y--~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G----~~GG~v~gs~~li~~ 385 (430)
+..+++++++.|+. +++++||+.|+-.+ |......-.+||++|||=|-.| .+||||+|.+++++.
T Consensus 174 i~~I~~~i~~vk~~~p~~iifVDNCYGEFv---------E~~EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~ 244 (403)
T PF06838_consen 174 IEEIKEIIKFVKEINPDVIIFVDNCYGEFV---------ETQEPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVER 244 (403)
T ss_dssp HHHHHHHHHHHHHH-TTSEEEEE-TTTTTT---------SSS-GGGGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCeEEEEeCCcceec---------cccCccccchhheeccceeCCCCCccCcCCEEechHHHHHH
Confidence 44577777777764 88999999986432 1111111246999999999876 578999999999987
Q ss_pred HH
Q psy2206 386 IR 387 (430)
Q Consensus 386 l~ 387 (430)
.-
T Consensus 245 ~a 246 (403)
T PF06838_consen 245 AA 246 (403)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.02 Score=58.38 Aligned_cols=59 Identities=25% Similarity=0.329 Sum_probs=47.9
Q ss_pred cccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCccccc
Q psy2206 65 PVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIAS 139 (430)
Q Consensus 65 pi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~ 139 (430)
.+....|++|+.. +++++|||++++||||. .+|.+.+++.++++++|.+.++++...|+
T Consensus 27 ~~~~~~~~~~~~~---------------~g~~~i~l~~~~~~~~~-~~~~i~~a~~~~~~~~~~~~~~~~~~~G~ 85 (397)
T PRK06939 27 VITSPQGADITVA---------------DGKEVINFCANNYLGLA-NHPELIAAAKAALDSHGFGMASVRFICGT 85 (397)
T ss_pred cccCCCCceEEec---------------CCCeEEEeeccCccccC-CCHHHHHHHHHHHHHcCCCCcccccccCC
Confidence 4567788887641 23589999999999999 58999999999999998877777766665
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.033 Score=57.64 Aligned_cols=66 Identities=14% Similarity=0.185 Sum_probs=48.2
Q ss_pred CCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccccc--eeecCHHHHHHH
Q psy2206 309 DGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGG--YVAGSKSTIDYI 386 (430)
Q Consensus 309 ~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG--~v~gs~~li~~l 386 (430)
+|...|+++++... +++++|||=+-++|.. .+.+ +++|+++.+--|++++++| +++.+++.++..
T Consensus 140 TGv~npv~~i~~~~--~~~lliVDavSs~g~~---------~l~~--d~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~ 206 (374)
T TIGR01365 140 SGVRVPNGDFIPAD--REGLTICDATSAAFAQ---------DLDY--HKLDVVTFSWQKVLGGEGAHGMLILSPRAVARL 206 (374)
T ss_pred hheecccccccccc--CCCcEEEEccchhcCC---------CCCh--hHCcEEEEechhccCCCCceEEEEECHHHHHHH
Confidence 68888887665322 5899999988665421 2333 4689999999999998774 677788877665
Q ss_pred H
Q psy2206 387 R 387 (430)
Q Consensus 387 ~ 387 (430)
.
T Consensus 207 ~ 207 (374)
T TIGR01365 207 E 207 (374)
T ss_pred h
Confidence 4
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.08 Score=54.66 Aligned_cols=105 Identities=18% Similarity=0.224 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHH----HhcCcEEEEecccccccc-CCCCC--
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLK----NKYKAYLYVDEAHSIGAL-GPTGR-- 345 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La----~~y~~~LivDEAh~~G~l-G~~Gr-- 345 (430)
++.+|+++++. +.-+-+..+.-..+++|.+..-+.+.+|+ ...|+.++-|+||+++-+ +..-.
T Consensus 160 mD~Ve~LV~~D----------~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL~~~~~~~~ 229 (425)
T PF12897_consen 160 MDMVEELVAED----------PSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHLYDEEPRDA 229 (425)
T ss_dssp HHHHHHHTHTS----------TTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BSSSSSS---
T ss_pred HHHHHHHHhcC----------CccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeeccccccchh
Confidence 57888887652 11233455555667799988766556665 357999999999998877 43222
Q ss_pred -----ccceecCCCCCCccEEEeCccc-hhcccc-ceeecCHHHHHHHHhc
Q psy2206 346 -----GVTEYFGIDPREVDILMGTYTK-SFGSMG-GYVAGSKSTIDYIRAN 389 (430)
Q Consensus 346 -----G~~e~~g~~~~~~dIv~~TlSK-a~G~~G-G~v~gs~~li~~l~~~ 389 (430)
..|+..|- | +..++.+|.|| +|...| +|+++|++-+++++..
T Consensus 230 ~~nil~~~~~AGn-p-drv~~F~STSKITf~GaGva~~aaS~~Nl~~~~~~ 278 (425)
T PF12897_consen 230 LLNILDACAKAGN-P-DRVYVFASTSKITFPGAGVAFFAASEANLAWIKKH 278 (425)
T ss_dssp ---HHHHHHHTT--T-TSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHHH
T ss_pred hhHHHHHHHHcCC-C-CeEEEEecccccccCCcceeeeecCHHHHHHHHHH
Confidence 12334453 3 45688999999 666555 8999999999888763
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.62 Score=49.75 Aligned_cols=99 Identities=14% Similarity=0.083 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCc-----EEEEeccccccccCCCCCcc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKA-----YLYVDEAHSIGALGPTGRGV 347 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~-----~LivDEAh~~G~lG~~GrG~ 347 (430)
+++|++.|.+.. .+..+|+.-.--.+.|.+-||++|.++|++||+ ||=||=|++-.++ +.-+..
T Consensus 215 ~~aL~~aI~~d~----------~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~l-Pf~~~~ 283 (470)
T PLN02263 215 CADFKAKLLANK----------DKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMM-PFVKRA 283 (470)
T ss_pred HHHHHHHHHhCC----------CCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHh-hhcccc
Confidence 789999887631 123344433334468999999999999999997 9999999864333 211111
Q ss_pred ceecCCCCCCccEEEeCccchhccc--cceeecCHHHHH
Q psy2206 348 TEYFGIDPREVDILMGTYTKSFGSM--GGYVAGSKSTID 384 (430)
Q Consensus 348 ~e~~g~~~~~~dIv~~TlSKa~G~~--GG~v~gs~~li~ 384 (430)
+.+... ..+|=+..+.+|-++++ .|++......++
T Consensus 284 -~~~df~-~~vDSIsvD~HK~l~~P~~cgvll~R~~~~~ 320 (470)
T PLN02263 284 -PKVTFK-KPIGSVSVSGHKFVGCPMPCGVQITRMEHIN 320 (470)
T ss_pred -cccCCC-cCccEEEECCccccCCCcCEEEEEEehhhHh
Confidence 112221 23777888999998753 366666655443
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.073 Score=61.41 Aligned_cols=77 Identities=14% Similarity=0.115 Sum_probs=56.3
Q ss_pred EcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccch-----hcccc-ce
Q psy2206 302 VEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKS-----FGSMG-GY 375 (430)
Q Consensus 302 ~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa-----~G~~G-G~ 375 (430)
+-.+-+..|.+.|+++|+++|+++|++++||=.+..+.+... ...+ .+||++++..|- ||.+| ||
T Consensus 211 lvq~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~----pge~-----GaDi~vgs~qkfg~P~g~GGP~aGf 281 (954)
T PRK05367 211 LLQYPGTSGEVRDYTALIAAAHARGALVAVAADLLALTLLTP----PGEM-----GADIAVGSAQRFGVPMGFGGPHAAY 281 (954)
T ss_pred EEecCCCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCC----hhhc-----CCCEEEeeCcccCCCCCCCCCCEEE
Confidence 333446789999999999999999999999876633322211 1222 459999999996 66665 89
Q ss_pred eecCHHHHHHHH
Q psy2206 376 VAGSKSTIDYIR 387 (430)
Q Consensus 376 v~gs~~li~~l~ 387 (430)
++.++++++.+.
T Consensus 282 lavr~~~~r~lp 293 (954)
T PRK05367 282 FAVRDAYKRSMP 293 (954)
T ss_pred EEECHHHHhhCC
Confidence 999888776653
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.15 Score=52.75 Aligned_cols=99 Identities=18% Similarity=0.232 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC-HHHHHHHHHhcCcEEEEeccccccccCCCCCccc---
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR-LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT--- 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~-L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~--- 348 (430)
.+.+|+++++.. ...++.|...+....+..+| +.+|.++|++||+..++-.||++-. .-.+
T Consensus 141 ~~~ie~~i~~~G----------~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~-----~~~~~~i 205 (389)
T PF05889_consen 141 LEAIEAKIEELG----------ADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQS-----SKCMHLI 205 (389)
T ss_dssp HHHHHHHHHHHC----------GGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT------HHHHHHH
T ss_pred HHHHHHHHHHhC----------CCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhH-----HHHHHHH
Confidence 366777776531 13466667777777788998 9999999999999999999987511 0000
Q ss_pred -eecCCCCCCccEEEeCccchh--ccccceeec-CHHHHHHHHh
Q psy2206 349 -EYFGIDPREVDILMGTYTKSF--GSMGGYVAG-SKSTIDYIRA 388 (430)
Q Consensus 349 -e~~g~~~~~~dIv~~TlSKa~--G~~GG~v~g-s~~li~~l~~ 388 (430)
+.+-. ..+|+.+.|+.|-| ++-|+.|++ .+..++.+..
T Consensus 206 ~~a~~~--GRvda~vqS~dkNF~VPvGgai~As~~~~~i~~vs~ 247 (389)
T PF05889_consen 206 QQAWRV--GRVDAFVQSTDKNFMVPVGGAIMASFDPSGILAVSK 247 (389)
T ss_dssp HHHHHH--STCSEEEEEHHHHHCEESSHEEEEESSHHHHHHHHH
T ss_pred HHHHhc--CCcceeeeecCCCEEecCCCcEEEecCHHHHHHHHH
Confidence 01111 24688889999988 333444544 4567777765
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.044 Score=56.57 Aligned_cols=102 Identities=14% Similarity=0.070 Sum_probs=65.9
Q ss_pred CCc-ccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-ceeecCHHHHHHH
Q psy2206 309 DGS-IVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYI 386 (430)
Q Consensus 309 ~G~-i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l 386 (430)
+|. +.|++++. +++++||=+.++|.. .++.++.++...|-.|.+|.+| |+++.++++++.+
T Consensus 158 tGv~~~~~~~i~------~~~lvVDa~Ss~g~~-----------pidv~~~~v~~~saqK~lGP~Gl~~v~vr~~~l~~~ 220 (365)
T PLN02452 158 HGVEFKDYPDVG------NVPLVADMSSNFLSK-----------PVDVSKYGVIYAGAQKNVGPSGVTIVIIRKDLIGNA 220 (365)
T ss_pred CcEecCcccccC------CCeEEEECCccccCc-----------ccCHHHcCEEEEecccccCCCCeEEEEEcHHHHhhc
Confidence 577 46777764 389999999876531 1222334556679999999888 8899999888765
Q ss_pred HhcCCccc----------ccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 387 RANSHVRS----------YATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 387 ~~~~~~~~----------~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
......+. +-.++|-..+.+..++|+.++++.|.+...+|-
T Consensus 221 ~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~ 271 (365)
T PLN02452 221 RPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRN 271 (365)
T ss_pred ccCCCchhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 43222111 002345556666778999998765655555543
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.15 Score=55.42 Aligned_cols=96 Identities=22% Similarity=0.176 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccc-cCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGA-LGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~-lG~~GrG~~e~~ 351 (430)
+++|++.|++....|. ...+||...=-..+|.+.||++|.++|++||+||=||=||+..+ +-+..+.. ..
T Consensus 271 ~~~L~~~I~~d~~~g~-------~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~--~~ 341 (539)
T PLN02590 271 PESLEEAISHDLAKGF-------IPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKF--ID 341 (539)
T ss_pred HHHHHHHHHHHHhcCC-------CcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHH--hc
Confidence 7999999987543221 23334433333447999999999999999999999999987544 22222221 13
Q ss_pred CCCCCCccEEEeCccchhccc--cceeecC
Q psy2206 352 GIDPREVDILMGTYTKSFGSM--GGYVAGS 379 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~~--GG~v~gs 379 (430)
|+ +.+|=+.-..+|-+..+ .|++...
T Consensus 342 Gi--e~ADSit~D~HK~l~~p~~cg~llvr 369 (539)
T PLN02590 342 GI--ENADSFNMNAHKWLFANQTCSPLWVK 369 (539)
T ss_pred CC--ccCCEEEECchhhcCcCcCEEEEEec
Confidence 44 35688888999998643 3554443
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.024 Score=57.93 Aligned_cols=24 Identities=17% Similarity=0.146 Sum_probs=22.9
Q ss_pred ccccCCCCCChhhHHHHHHHHhhhC
Q psy2206 103 YNYLGFGENTGLCTERSKESVKQSG 127 (430)
Q Consensus 103 yNYLGfa~~~~~~~~a~~~al~~yG 127 (430)
||||||+ +||.+++++.+++++||
T Consensus 27 ~~ylgl~-~~~~~~~~~~~~~~~~~ 50 (346)
T TIGR03576 27 YDLTGLA-GGFKIDEEDLELLETYV 50 (346)
T ss_pred cccccCC-CChhHHHHHHHHHHHhc
Confidence 7999999 69999999999999996
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.18 Score=52.10 Aligned_cols=99 Identities=30% Similarity=0.364 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceE-EEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccc-cCCCCCcccee
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKI-LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGA-LGPTGRGVTEY 350 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~-lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~-lG~~GrG~~e~ 350 (430)
+++|+++|++....| .++ +||.-.=-.++|.+.|+++|.++|++|++||=||=|++..+ +-+.-+.. .
T Consensus 178 ~~~L~~~l~~~~~~g--------~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~--~ 247 (373)
T PF00282_consen 178 IEALEKALEKDIANG--------KTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRHL--L 247 (373)
T ss_dssp HHHHHHHHHHHHHTT--------EEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGG--G
T ss_pred HHHhhhhhccccccc--------ccceeeeccCCCcccccccCHHHHhhhccccceeeeeccccccccccccccccc--c
Confidence 689999998754322 233 33333334568999999999999999999999999987422 33333321 2
Q ss_pred cCCCCCCccEEEeCccchhcccc--ceeec-CHHHH
Q psy2206 351 FGIDPREVDILMGTYTKSFGSMG--GYVAG-SKSTI 383 (430)
Q Consensus 351 ~g~~~~~~dIv~~TlSKa~G~~G--G~v~g-s~~li 383 (430)
.++ ..+|=+....+|.++.+- |++.. ++...
T Consensus 248 ~gi--~~adSit~d~HK~l~~P~~~~~~l~r~~~~l 281 (373)
T PF00282_consen 248 FGI--ERADSITIDPHKWLGVPYGCGVLLVRDKSDL 281 (373)
T ss_dssp TTG--GGESEEEEETTTTTS-SSS-EEEEESSGGGH
T ss_pred ccc--ccccccccchhhhhcCCccceeEEeecccch
Confidence 344 357888889999997643 55544 44333
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >KOG0629|consensus | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.18 Score=52.63 Aligned_cols=118 Identities=21% Similarity=0.193 Sum_probs=73.5
Q ss_pred cceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC----------HHHHHHHHHHHhhcCCCCCCCCCceEEEE
Q psy2206 232 STCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA----------PSSLEAGLQKALLEGQPHSGKPWRKILIV 301 (430)
Q Consensus 232 ~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~----------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi 301 (430)
.+++-|.|- +.+ =.+.+++.-+|.|+-..+. ++|||+.|.+....|. .. ++|
T Consensus 196 p~lilFtSe------esH----YSi~kaAa~lg~gtd~c~~v~t~e~Gkm~~~dLe~kile~k~kg~-------~P-f~v 257 (510)
T KOG0629|consen 196 PPLILFTSE------ESH----YSIKKAAAFLGLGTDHCIKVKTDERGKMIPDDLEKKILEAKAKGG-------VP-FFV 257 (510)
T ss_pred CcEEEEecc------cch----hhHHHHHHHhccCCceeEEecccccCccchHHHHHHHHHHHhcCC-------CC-eEE
Confidence 567888772 222 2244455667877655443 7999999987653332 12 333
Q ss_pred EcCccC-CCCcccCHHHHHHHHHhcCcEEEEecccccccc-CCCCCccceecCCCCCCccEEEeCccchhcc
Q psy2206 302 VEGIFS-MDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGAL-GPTGRGVTEYFGIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 302 ~E~v~s-m~G~i~~L~~I~~La~~y~~~LivDEAh~~G~l-G~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~ 371 (430)
.-+.-+ --|...||+.|+++|++|+.|+=||-|.+-|++ .+..|. -.-|++ +++=+.-+-+|-+|.
T Consensus 258 naTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~--kl~Gie--ra~SvtwnpHK~~ga 325 (510)
T KOG0629|consen 258 NATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRH--KLTGIE--RANSVTWNPHKLMGA 325 (510)
T ss_pred EecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccChhhHh--hccCcc--ccCceeecHHHhhcC
Confidence 333211 137888999999999999999999999876553 332222 123443 345555667787764
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.88 Score=50.17 Aligned_cols=107 Identities=23% Similarity=0.154 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHH---HhcCc--EEEEeccccccc---c-CCC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLK---NKYKA--YLYVDEAHSIGA---L-GPT 343 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La---~~y~~--~LivDEAh~~G~---l-G~~ 343 (430)
+++|++.|++....|.| ..+||.-.=-..+|.+-||++|.+|| +++|+ ||=||=|++.-+ + .+.
T Consensus 262 ~~~L~~~I~~~~~~g~p-------~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~ 334 (608)
T TIGR03811 262 INELEKIIRKLAAEKTP-------ILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDED 334 (608)
T ss_pred HHHHHHHHHHHHhcCCC-------eEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhcccc
Confidence 69999999875433322 22333222234479999999999999 67887 588999987421 1 111
Q ss_pred CC----------------------ccc-----eecCCCCCCccEEEeCccchhcc---ccceeecCHHHHHHHHh
Q psy2206 344 GR----------------------GVT-----EYFGIDPREVDILMGTYTKSFGS---MGGYVAGSKSTIDYIRA 388 (430)
Q Consensus 344 Gr----------------------G~~-----e~~g~~~~~~dIv~~TlSKa~G~---~GG~v~gs~~li~~l~~ 388 (430)
+. .+. ..-++ ..+|=+.-.++|.+.. .|+++.-++.+.+.+..
T Consensus 335 ~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gl--e~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~~~ 407 (608)
T TIGR03811 335 DNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAI--SEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISY 407 (608)
T ss_pred ccccccchhhcccccccccccccccccHhHHHHHhcC--cCceEEEeCcccccccCCCeEEEEEeCHHHHHHHhc
Confidence 00 000 01133 3578788899998764 34456666666665543
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.13 Score=51.49 Aligned_cols=68 Identities=22% Similarity=0.366 Sum_probs=49.0
Q ss_pred cccCHHHHHHHHHhc--CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhc----cccceeecCHHHHH
Q psy2206 311 SIVRLPEIVRLKNKY--KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG----SMGGYVAGSKSTID 384 (430)
Q Consensus 311 ~i~~L~~I~~La~~y--~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G----~~GG~v~gs~~li~ 384 (430)
.++++++++.+.++- +++++||..|+-.+ |......-.+|++.|||=|--| .+|||++|.+++++
T Consensus 184 ~I~eI~~~i~~vk~inpn~ivFVDNCYGEFv---------E~~EPt~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve 254 (416)
T COG4100 184 SIAEIEEMITFVKEINPNVIVFVDNCYGEFV---------EEKEPTHVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVE 254 (416)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEEeccchhhh---------hccCccccchhhhccceeeCCCCceeeccceeechHHHHH
Confidence 455678888887764 78999999986433 2111111356999999999775 47899999999887
Q ss_pred HHH
Q psy2206 385 YIR 387 (430)
Q Consensus 385 ~l~ 387 (430)
...
T Consensus 255 ~~~ 257 (416)
T COG4100 255 AAA 257 (416)
T ss_pred hhc
Confidence 643
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.6 Score=54.15 Aligned_cols=75 Identities=15% Similarity=0.173 Sum_probs=53.5
Q ss_pred cCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc------cee
Q psy2206 303 EGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG------GYV 376 (430)
Q Consensus 303 E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G------G~v 376 (430)
-.+.+..|.+.|+++|+++|+++|++++| -++..+..+-. -...+ .+||++++..|-.+..| ||+
T Consensus 240 vq~P~~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~---~pge~-----GADi~vgsgqKwg~P~G~GGP~aGfl 310 (993)
T PLN02414 240 VQYPATDGEVLDYAEFVKNAHANGVKVVM-ATDLLALTMLK---PPGEW-----GADIVVGSAQRFGVPMGYGGPHAAFL 310 (993)
T ss_pred EecCCCCeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcCCC---CHhhc-----cCcEEEECCCccccCCCCCCCCeeEE
Confidence 34445689999999999999999999999 66665432110 01122 45999999988764334 899
Q ss_pred ecCHHHHHHH
Q psy2206 377 AGSKSTIDYI 386 (430)
Q Consensus 377 ~gs~~li~~l 386 (430)
+.++++.+.+
T Consensus 311 avr~~~~r~~ 320 (993)
T PLN02414 311 ATSQEYKRLM 320 (993)
T ss_pred EECHHHHhhC
Confidence 8888876644
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.1 Score=54.59 Aligned_cols=40 Identities=10% Similarity=-0.096 Sum_probs=35.4
Q ss_pred eeEEeeeccccCCCCCChhhHHHHHHHH-hhhCCccccCCcccccc
Q psy2206 96 TCLNLASYNYLGFGENTGLCTERSKESV-KQSGCALCSPSGEIASM 140 (430)
Q Consensus 96 ~~lnl~SyNYLGfa~~~~~~~~a~~~al-~~yG~gs~~sr~~~g~~ 140 (430)
.+-+++||||+ +|.+++++..++ .+||.|++|||...|+-
T Consensus 30 ~~~l~~sen~~-----~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~ 70 (416)
T PRK13034 30 HLELIASENFT-----SPAVMEAQGSVLTNKYAEGYPGKRYYGGCE 70 (416)
T ss_pred CeeecccccCC-----CHHHHHHhcchhhcCCCCCCCCCcccCCCh
Confidence 35567999998 799999999995 99999999999988865
|
|
| >KOG2467|consensus | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.58 Score=48.13 Aligned_cols=62 Identities=27% Similarity=0.371 Sum_probs=45.8
Q ss_pred cccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchh-ccccceeec
Q psy2206 311 SIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSF-GSMGGYVAG 378 (430)
Q Consensus 311 ~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~-G~~GG~v~g 378 (430)
...+.+.++++|++-|++|++|=||-.|+... |+... .-+..|||+.|.+|++ |.-||.|.-
T Consensus 202 R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA---~vips---PFey~DiVTTTTHKsLRGPRg~mIFy 264 (477)
T KOG2467|consen 202 RLIDYARFRKIADKVGAYLMADMAHISGLVAA---GVIPS---PFEYCDIVTTTTHKSLRGPRGAMIFY 264 (477)
T ss_pred hhccHHHHHHHHHhcCceeehhhhhHHHHHhc---ccCCC---cccccceeeccccccccCCcceeEEE
Confidence 34578999999999999999999998776532 33211 1134599999999999 666776643
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=89.66 E-value=0.77 Score=48.45 Aligned_cols=80 Identities=24% Similarity=0.315 Sum_probs=48.6
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc---
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM--- 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~--- 372 (430)
++..|++..+. ..|.+.++.+|.++++++|+++|+ -+--. .++ .....|- -.+||++|. +|.||.+
T Consensus 197 ~~a~v~vq~Pn-~~G~~ed~~~i~~~~h~~gal~~~-~ad~~-aL~-----~l~~Pge--~GADI~vg~-~Q~fg~p~~~ 265 (429)
T PF02347_consen 197 DTAAVMVQNPN-TFGVFEDIKEIADIAHAAGALVIV-GADPN-ALG-----GLKSPGE--YGADIVVGE-HQTFGIPMGF 265 (429)
T ss_dssp TEEEEEEESS--TTSB--THHHHHHHHHHTT-EEEE-CGGCC-GCC-----TC--GGG--GT-SEEEEC-CTTTT---CC
T ss_pred CeEEEEeecCC-CCceEeeHHHHHHHHHHcCCEEEE-ecCHH-HHh-----CcCChhh--cCccEEeeC-CCCCcccCCC
Confidence 57778887774 469999999999999999999887 33211 121 1122221 135899888 9999742
Q ss_pred ---c-ceeecCHHHHHHH
Q psy2206 373 ---G-GYVAGSKSTIDYI 386 (430)
Q Consensus 373 ---G-G~v~gs~~li~~l 386 (430)
| |+++.+++++..+
T Consensus 266 GGP~~G~~a~~~~l~r~l 283 (429)
T PF02347_consen 266 GGPGAGFFAVREDLVRQL 283 (429)
T ss_dssp C-S--EEEEE-GGGGGGS
T ss_pred CCCCeeeEEEhhhhhhhC
Confidence 2 7888887765544
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >KOG1412|consensus | Back alignment and domain information |
|---|
Probab=89.63 E-value=0.87 Score=45.99 Aligned_cols=92 Identities=15% Similarity=0.196 Sum_probs=57.7
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccc-cCCCCC-ccceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGA-LGPTGR-GVTEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~-lG~~Gr-G~~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
..++|+--.-++++|.=.- +..|.++.++.+.+.+.|-||- |+ -|.--+ .++-.+.++...--+++.||+|-||
T Consensus 178 ~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQ-GfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfG 256 (410)
T KOG1412|consen 178 GSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQ-GFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFG 256 (410)
T ss_pred CcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhc-ccccCCccccHHHHHHHHhcCCeEEEEhhhhhhcc
Confidence 4545555555898885432 8889999999999999999984 43 232212 1111111221111578999999999
Q ss_pred ccc---c---eeecCHHHHHHHHh
Q psy2206 371 SMG---G---YVAGSKSTIDYIRA 388 (430)
Q Consensus 371 ~~G---G---~v~gs~~li~~l~~ 388 (430)
+.+ | ++.-++.++..+..
T Consensus 257 lYneRvGnltvv~~n~a~i~~v~S 280 (410)
T KOG1412|consen 257 LYNERVGNLTVVVNNPAVIAGVKS 280 (410)
T ss_pred cccccccceEEEecChhHHHHHHH
Confidence 865 3 45566777765554
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=89.20 E-value=0.44 Score=48.30 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=39.3
Q ss_pred cCCcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeee---ccccCCCCCChhhHHHHHHHHhhhCC
Q psy2206 62 FNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS---YNYLGFGENTGLCTERSKESVKQSGC 128 (430)
Q Consensus 62 ~~rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~S---yNYLGfa~~~~~~~~a~~~al~~yG~ 128 (430)
+...+.+..|.++... +++++|||+| |||||.+ +|.+.+++.+++++++.
T Consensus 9 ~~~~~~~~~g~~~~~~---------------~g~~~id~~~~~~~~~lG~~--~p~v~~a~~~~~~~~~~ 61 (379)
T TIGR00707 9 LPVKIVRGKGAYVYDV---------------NGKEYLDFVAGIAVNSLGHA--HPKLVEALKEQLEKLVH 61 (379)
T ss_pred CCccEEEeecCEEEeC---------------CCCEEEEcCcchhhccCCCC--CHHHHHHHHHHHhhccc
Confidence 4445677777777532 2358999999 8999985 79999999999999864
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.84 E-value=0.99 Score=46.69 Aligned_cols=102 Identities=11% Similarity=0.090 Sum_probs=65.3
Q ss_pred CCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-ceeecCHHHHHHHH
Q psy2206 309 DGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIR 387 (430)
Q Consensus 309 ~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~ 387 (430)
+|...| ++.+.+++++|+|=+-+++. ..+.+ ++.|++..+--|++|.+| ++++.+++.++...
T Consensus 156 tGv~~~-----~~~~~~~~llvvD~sS~~~s---------~pid~--~~~dvi~agsQKnlgP~Gltvvivs~~al~~~~ 219 (364)
T PRK12462 156 EGLQFP-----DAAGLPDSPLIADMSSDFMS---------RPFDV--EAYGMVYAHAQKNLGPAGVTVAIIRRALLERVP 219 (364)
T ss_pred ceEecC-----cccccCCCeEEEEcCchhhC---------CCCCh--HHccEEEeeccccCCCCceEEEEECHHHHhhcc
Confidence 466554 33334689999998855432 12333 456999999999999777 67788888876544
Q ss_pred hcCCc-----------ccccCCCcHHHHHHHHHHHHHHHcc-CCchHHHhhh
Q psy2206 388 ANSHV-----------RSYATSMPPPVAMQILTSMRIIMGL-ENGDEGNVRH 427 (430)
Q Consensus 388 ~~~~~-----------~~~s~s~~P~~~aaalaaL~~l~~~-~~~~~~~~r~ 427 (430)
..... ..+. ++|-....++..+|+.|+++ .|.+.+.+|-
T Consensus 220 ~~~p~~ldy~~~~~~~s~~n-TPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~ 270 (364)
T PRK12462 220 DTLPPMLDFRTHVEHRSNYN-TPPVFAIYVMALVLRWIRDEIGGVHAMRDIN 270 (364)
T ss_pred ccCCchhhHHHHHhcCCCCC-CchHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 32111 1222 34455566677789999877 5766666554
|
|
| >KOG0258|consensus | Back alignment and domain information |
|---|
Probab=86.50 E-value=1.9 Score=44.80 Aligned_cols=107 Identities=19% Similarity=0.261 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCC--c-
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR--G- 346 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr--G- 346 (430)
.++|++.++++. .+- .-+++||+ .+-+++|.+.. +++|+.+|.+++++|+.||+|---++-..-+ .
T Consensus 200 ~~el~~~~~eA~-k~i------~~r~lvvI-NPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSf 271 (475)
T KOG0258|consen 200 VAELERSVDEAR-KGI------NPRALVVI-NPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSF 271 (475)
T ss_pred HHHHHHHHHHHh-ccC------CceEEEEE-CCCCccchhhcHHHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhH
Confidence 688888888764 111 12445555 45688998764 9999999999999999999998777654211 1
Q ss_pred --cceecC-CCC-CCccEEEeCccchh----cccccee---ecCHHHHHHHH
Q psy2206 347 --VTEYFG-IDP-REVDILMGTYTKSF----GSMGGYV---AGSKSTIDYIR 387 (430)
Q Consensus 347 --~~e~~g-~~~-~~~dIv~~TlSKa~----G~~GG~v---~gs~~li~~l~ 387 (430)
+..+.| .-+ .--.+..+|.||.+ |.-|||+ --++++.+.+.
T Consensus 272 KKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RGGYmEv~n~~prv~~qi~ 323 (475)
T KOG0258|consen 272 KKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRGGYMESLNRDPRVKQQIK 323 (475)
T ss_pred HHHHHHhcCccCCceEEEeeecccccceeeecccCCeeecccCChhHHHHHH
Confidence 111112 111 11235678889987 4566885 22455544443
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.23 E-value=1.6 Score=45.95 Aligned_cols=93 Identities=19% Similarity=0.238 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCccc-CHHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIV-RLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~-~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
.+||++++.+. -.++.||.+ |.-|... ++.+|+++.+++|..|+.|-|.--.++|..-.| .+
T Consensus 194 lddLk~k~~~~------------~AalMiTnP--sT~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPG---d~ 256 (496)
T COG1003 194 LDDLRAKAEDN------------LAALMITNP--STLGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLARPG---DM 256 (496)
T ss_pred HHHHHHHhccc------------eeEEEeccC--cccccchhhHHHHHHHHHHcCCEEEecCcchhhhhcccccc---cc
Confidence 68888887652 123444432 2335443 599999999999999999999765555543222 22
Q ss_pred CCCCCCccEEEeCccchhcc------cc-ceeecCHHHHHHHH
Q psy2206 352 GIDPREVDILMGTYTKSFGS------MG-GYVAGSKSTIDYIR 387 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~------~G-G~v~gs~~li~~l~ 387 (430)
..||+=--|+|+|.. +| |=|+..+.++.+|-
T Consensus 257 -----G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP 294 (496)
T COG1003 257 -----GFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLP 294 (496)
T ss_pred -----ccceEEeecccccccCCCCCCCCCCceehHhhccccCC
Confidence 347887899999953 33 45655666666554
|
|
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=83.85 E-value=1.1 Score=46.31 Aligned_cols=45 Identities=13% Similarity=0.045 Sum_probs=36.4
Q ss_pred cccCCCCCEEEEeccccCCCCceeeecCCcceeEEeee---ccccCCCCCChhhHHHHHHHHhhh
Q psy2206 65 PVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS---YNYLGFGENTGLCTERSKESVKQS 126 (430)
Q Consensus 65 pi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~S---yNYLGfa~~~~~~~~a~~~al~~y 126 (430)
.+....|.++.- -+++++|+|.| |+|||.+ ||++.+|+.++++++
T Consensus 20 ~~~~~~G~~l~d---------------~dG~~ylD~~~g~~~~~lGh~--~p~v~~a~~~~~~~~ 67 (397)
T TIGR03246 20 IPVRGEGSRVWD---------------QQGKEYIDFAGGIAVNALGHA--HPELVKALIEQADKL 67 (397)
T ss_pred eEEEeecCEEEe---------------CCCCEEEECCcCHhhccCCCC--CHHHHHHHHHHHHhc
Confidence 346777777652 23569999999 8999996 899999999999984
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.83 E-value=1 Score=45.78 Aligned_cols=47 Identities=19% Similarity=0.131 Sum_probs=37.6
Q ss_pred CcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeecc---ccCCCCCChhhHHHHHHHHhhhC
Q psy2206 64 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYN---YLGFGENTGLCTERSKESVKQSG 127 (430)
Q Consensus 64 rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyN---YLGfa~~~~~~~~a~~~al~~yG 127 (430)
.++....|.++.- -+++++|+|+|++ |||.. ||++++|+.+++++++
T Consensus 13 ~~~~~~~G~~~~d---------------~~G~~~lD~~s~~~~~~lG~~--~p~v~~a~~~~~~~~~ 62 (377)
T PRK02936 13 IDIVKGKGTKVTD---------------NNGKTYLDFTSGIAVCNLGHC--HPTVTKAVQEQLDDIW 62 (377)
T ss_pred ceEEEeecCEEEe---------------CCCCEEEECCcchhhccCCCC--CHHHHHHHHHHHHhcc
Confidence 4567788887741 1235899999999 99974 8999999999999864
|
|
| >KOG1383|consensus | Back alignment and domain information |
|---|
Probab=83.28 E-value=6.9 Score=41.53 Aligned_cols=86 Identities=20% Similarity=0.221 Sum_probs=55.1
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHh-cCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccc-hhcccc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNK-YKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTK-SFGSMG 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~-y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSK-a~G~~G 373 (430)
++++|+.+..+-+.|.+.|.++|.++.-+ |++.+=+|-+-+ |++-+.|-...+.|+.....+.=+..+-+| +|.+.|
T Consensus 218 Nti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~G-gFi~p~~~~~~~~fdFr~p~V~Sisa~~HKYGl~~~G 296 (491)
T KOG1383|consen 218 NTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLG-GFINPAGYLNEEEFDFRVPGVTSISADGHKYGLAPAG 296 (491)
T ss_pred ceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCc-cccccccccCccccccCCCCceeEeeccceeeeeecC
Confidence 78999999999999999999999999988 999999999865 333221211122344432233333344455 444555
Q ss_pred -ceee-cCHHH
Q psy2206 374 -GYVA-GSKST 382 (430)
Q Consensus 374 -G~v~-gs~~l 382 (430)
++++ .++++
T Consensus 297 ~~~vl~r~k~~ 307 (491)
T KOG1383|consen 297 SSWVLYRNKEL 307 (491)
T ss_pred cEEEEEccccc
Confidence 4443 34443
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=82.14 E-value=2 Score=44.38 Aligned_cols=50 Identities=10% Similarity=0.048 Sum_probs=38.3
Q ss_pred cccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCC--CChhhHHHHHHHHhhhCCcc
Q psy2206 65 PVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGE--NTGLCTERSKESVKQSGCAL 130 (430)
Q Consensus 65 pi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~--~~~~~~~a~~~al~~yG~gs 130 (430)
++.+..|.+|... +++++|+|+| +|++++. .||++.+|+.+++++++.++
T Consensus 22 ~~~~~~g~~~~~~---------------~g~~~lD~~s-~~~~~~~Gh~~p~v~~a~~~~~~~~~~~~ 73 (401)
T TIGR01885 22 VFSKAEGVHVWDV---------------EGKRYLDFLS-AYSAVNQGHCHPKIVKALTEQAQKLTLSS 73 (401)
T ss_pred eEEeeecCEEEeC---------------CCCEEEEccc-CHhhccCCCCCHHHHHHHHHHHHhccccc
Confidence 3457778877531 2358999999 6998873 48999999999999987543
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=80.68 E-value=11 Score=36.99 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=32.9
Q ss_pred eEEEEEc-CccCCCCc---ccCHHHHHHHHHhcCcEEEEecccccc
Q psy2206 297 KILIVVE-GIFSMDGS---IVRLPEIVRLKNKYKAYLYVDEAHSIG 338 (430)
Q Consensus 297 ~~lIi~E-~v~sm~G~---i~~L~~I~~La~~y~~~LivDEAh~~G 338 (430)
..++++| ++++-.-. ..+|..|..+.++++..+++|=+|+.|
T Consensus 151 ~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs~G 196 (250)
T PRK13397 151 SNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHSTG 196 (250)
T ss_pred CeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECCCCCCc
Confidence 4588899 77443322 668999999999899999999999865
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=80.49 E-value=2 Score=44.65 Aligned_cols=46 Identities=15% Similarity=0.059 Sum_probs=37.6
Q ss_pred CcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeee---ccccCCCCCChhhHHHHHHHHhhh
Q psy2206 64 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS---YNYLGFGENTGLCTERSKESVKQS 126 (430)
Q Consensus 64 rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~S---yNYLGfa~~~~~~~~a~~~al~~y 126 (430)
..+.+..|.++.- -+++++|+|.| ++|||.+ ||++.+|+.++++++
T Consensus 23 ~~~~~~~G~~~~d---------------~dG~~~lD~~~g~~~~~lGh~--~p~v~~A~~~~~~~~ 71 (406)
T PRK12381 23 FIPVRGEGSRLWD---------------QQGKEYIDFAGGIAVNALGHA--HPALREALNEQASKF 71 (406)
T ss_pred ceEEEeecCEEEe---------------CCCCEEEEcCcCHhhccCCCC--CHHHHHHHHHHHhhc
Confidence 3456788887752 23468999999 8999999 899999999999986
|
|
| >KOG3846|consensus | Back alignment and domain information |
|---|
Probab=80.46 E-value=20 Score=36.43 Aligned_cols=66 Identities=18% Similarity=0.136 Sum_probs=47.8
Q ss_pred CceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
+..++|...||.--+|...++.+|-..-+..|+++=.|=||++|-.- -....|| +|..+=.-=|.+
T Consensus 213 DeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVp----L~LHdWg-----VDFACWCSYKYl 278 (465)
T KOG3846|consen 213 DEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVP----LQLHDWG-----VDFACWCSYKYL 278 (465)
T ss_pred CeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhhhcCCc----eEEeecC-----CceEEEeeeccc
Confidence 46788999999888999999999996667779999999999876321 1123344 456554444655
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 430 | ||||
| 3a2b_A | 398 | Crystal Structure Of Serine Palmitoyltransferase Fr | 3e-24 | ||
| 2w8w_A | 427 | N100y Spt With Plp-Ser Length = 427 | 7e-19 | ||
| 2w8j_A | 427 | Spt With Plp-Ser Length = 427 | 7e-19 | ||
| 2jgt_A | 422 | Low Resolution Structure Of Spt Length = 422 | 7e-19 | ||
| 3tqx_A | 399 | Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A | 3e-18 | ||
| 2w8t_A | 427 | Spt With Plp, N100c Length = 427 | 3e-18 | ||
| 2w8u_A | 427 | Spt With Plp, N100y Length = 427 | 3e-18 | ||
| 2w8v_A | 427 | Spt With Plp, N100w Length = 427 | 3e-18 | ||
| 2jg2_A | 422 | High Resolution Structure Of Spt With Plp Internal | 4e-18 | ||
| 1fc4_A | 401 | 2-Amino-3-Ketobutyrate Coa Ligase Length = 401 | 5e-18 | ||
| 2x8u_A | 412 | Sphingomonas Wittichii Serine Palmitoyltransferase | 2e-16 | ||
| 2bwo_B | 401 | 5-Aminolevulinate Synthase From Rhodobacter Capsula | 3e-16 | ||
| 1bs0_A | 384 | Plp-dependent Acyl-coa Synthase Length = 384 | 4e-16 | ||
| 1dj9_A | 384 | Crystal Structure Of 8-Amino-7-Oxonanoate Synthase | 5e-16 | ||
| 2bwn_A | 401 | 5-Aminolevulinate Synthase From Rhodobacter Capsula | 1e-15 | ||
| 4iw7_A | 399 | Crystal Structure Of 8-amino-7-oxononanoate Synthas | 2e-11 | ||
| 2wk8_A | 389 | Structure Of Holo Form Of Vibrio Cholerae Cqsa Leng | 2e-09 | ||
| 2wk7_A | 393 | Structure Of Apo Form Of Vibrio Cholerae Cqsa Lengt | 2e-09 | ||
| 3hqt_A | 409 | Plp-Dependent Acyl-Coa Transferase Cqsa Length = 40 | 2e-09 |
| >pdb|3A2B|A Chain A, Crystal Structure Of Serine Palmitoyltransferase From Sphingobacterium Multivorum With Substrate L-Serine Length = 398 | Back alignment and structure |
|
| >pdb|2W8W|A Chain A, N100y Spt With Plp-Ser Length = 427 | Back alignment and structure |
|
| >pdb|2W8J|A Chain A, Spt With Plp-Ser Length = 427 | Back alignment and structure |
|
| >pdb|2JGT|A Chain A, Low Resolution Structure Of Spt Length = 422 | Back alignment and structure |
|
| >pdb|3TQX|A Chain A, Structure Of The 2-Amino-3-Ketobutyrate Coenzyme A Ligase (Kbl) From Coxiella Burnetii Length = 399 | Back alignment and structure |
|
| >pdb|2W8T|A Chain A, Spt With Plp, N100c Length = 427 | Back alignment and structure |
|
| >pdb|2W8U|A Chain A, Spt With Plp, N100y Length = 427 | Back alignment and structure |
|
| >pdb|2W8V|A Chain A, Spt With Plp, N100w Length = 427 | Back alignment and structure |
|
| >pdb|2JG2|A Chain A, High Resolution Structure Of Spt With Plp Internal Aldimine Length = 422 | Back alignment and structure |
|
| >pdb|1FC4|A Chain A, 2-Amino-3-Ketobutyrate Coa Ligase Length = 401 | Back alignment and structure |
|
| >pdb|2X8U|A Chain A, Sphingomonas Wittichii Serine Palmitoyltransferase Length = 412 | Back alignment and structure |
|
| >pdb|2BWO|B Chain B, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus In Complex With Succinyl-Coa Length = 401 | Back alignment and structure |
|
| >pdb|1BS0|A Chain A, Plp-dependent Acyl-coa Synthase Length = 384 | Back alignment and structure |
|
| >pdb|1DJ9|A Chain A, Crystal Structure Of 8-Amino-7-Oxonanoate Synthase (Or 7-Keto- 8aminipelargonate Or Kapa Synthase) Complexed With Plp And The Product 8(S)-Amino-7-Oxonanonoate (Or Kapa). The Enzyme Of Biotin Biosynthetic Pathway. Length = 384 | Back alignment and structure |
|
| >pdb|2BWN|A Chain A, 5-Aminolevulinate Synthase From Rhodobacter Capsulatus Length = 401 | Back alignment and structure |
|
| >pdb|4IW7|A Chain A, Crystal Structure Of 8-amino-7-oxononanoate Synthase (biof) From Francisella Tularensis Length = 399 | Back alignment and structure |
|
| >pdb|2WK8|A Chain A, Structure Of Holo Form Of Vibrio Cholerae Cqsa Length = 389 | Back alignment and structure |
|
| >pdb|2WK7|A Chain A, Structure Of Apo Form Of Vibrio Cholerae Cqsa Length = 393 | Back alignment and structure |
|
| >pdb|3HQT|A Chain A, Plp-Dependent Acyl-Coa Transferase Cqsa Length = 409 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} Length = 398 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 5e-52
Identities = 53/143 (37%), Positives = 80/143 (55%), Gaps = 14/143 (9%)
Query: 275 SLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEA 334
L A L + LI +GIFSM+G IV LPE+ + N++ A + VD+A
Sbjct: 161 DLRAKLSRL---------PEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDA 211
Query: 335 HSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRS 394
HS+G +G G G +FG++ VD++MGT++KS S+GG+VAG ID+++ N+ RS
Sbjct: 212 HSLGVIGHKGAGTASHFGLNDD-VDLIMGTFSKSLASLGGFVAGDADVIDFLKHNA--RS 268
Query: 395 Y--ATSMPPPVAMQILTSMRIIM 415
+ SM P L ++ II
Sbjct: 269 VMFSASMTPASVASTLKALEIIQ 291
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* Length = 427 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 6e-51
Identities = 50/145 (34%), Positives = 78/145 (53%), Gaps = 14/145 (9%)
Query: 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVD 332
L+ L + L+V+EG++SM G I L E+V + K+ A + VD
Sbjct: 180 VEDLDKRLGRL---------PKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVD 230
Query: 333 EAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHV 392
EAHS+G GP GRGV E G++ + +D ++GT++KS G++GG+V + + +R
Sbjct: 231 EAHSMGFFGPNGRGVYEAQGLEGQ-IDFVVGTFSKSVGTVGGFVVSNHPKFEAVRLAC-- 287
Query: 393 RSY--ATSMPPPVAMQILTSMRIIM 415
R Y S+PP V TS+R +M
Sbjct: 288 RPYIFTASLPPSVVATATTSIRKLM 312
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A Length = 409 | Back alignment and structure |
|---|
Score = 173 bits (441), Expect = 5e-50
Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 17/145 (11%)
Query: 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVD 332
L +Q+ +IVV+ I+S G+I L E+V + ++ L VD
Sbjct: 175 CDHLRMLIQRH------------GPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVD 222
Query: 333 EAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHV 392
E+HS+G GP G G+ G+ V + + K+F G + + +
Sbjct: 223 ESHSLGTHGPNGAGLLAELGLTRE-VHFMTASLAKTFAYRAGAIWCNNEVNRCVP--FIS 279
Query: 393 RSY--ATSMPPPVAMQILTSMRIIM 415
++++ P A + T++ II
Sbjct: 280 YPAIFSSTLLPYEAAGLETTLEIIE 304
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 Length = 401 | Back alignment and structure |
|---|
Score = 170 bits (434), Expect = 5e-49
Identities = 49/144 (34%), Positives = 77/144 (53%), Gaps = 13/144 (9%)
Query: 275 SLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEA 334
LEA L++A R +LI +G+FSMDG I L + L +KY A + VD++
Sbjct: 163 ELEARLKEA-------REAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDS 215
Query: 335 HSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSF-GSMGGYVAGSKSTIDYIRANSHVR 393
H++G +G GRG EY + R VDI+ GT K+ G+ GGY A K ++++R S R
Sbjct: 216 HAVGFVGENGRGSHEYCDVMGR-VDIITGTLGKALGGASGGYTAARKEVVEWLRQRS--R 272
Query: 394 SY--ATSMPPPVAMQILTSMRIIM 415
Y + S+ P + + + ++
Sbjct: 273 PYLFSNSLAPAIVAASIKVLEMVE 296
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} Length = 399 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 3e-48
Identities = 54/144 (37%), Positives = 79/144 (54%), Gaps = 13/144 (9%)
Query: 275 SLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEA 334
LEA L++A K R LI +G+FSMDG I L I L +KY A + VD++
Sbjct: 161 DLEAKLKEA-------DEKGARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDS 213
Query: 335 HSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSF-GSMGGYVAGSKSTIDYIRANSHVR 393
H++G +G GRG EY G+ R VDIL GT K+ G+ GGY +G K I+++R S R
Sbjct: 214 HAVGFIGENGRGTPEYCGVADR-VDILTGTLGKALGGASGGYTSGHKEIIEWLRNRS--R 270
Query: 394 SY--ATSMPPPVAMQILTSMRIIM 415
Y + ++ P + L + ++
Sbjct: 271 PYLFSNTVAPVIVATSLKVLELLK 294
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* Length = 384 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 2e-47
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 17/152 (11%)
Query: 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVD 332
+ L L + ++V EG+FSMDG L EI ++ ++ +L VD
Sbjct: 155 VTHLARLLASP----------CPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVD 204
Query: 333 EAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHV 392
+AH G +G GRG + + ++L+ T+ K FG G V S + DY+ +
Sbjct: 205 DAHGTGVIGEQGRGSCWLQKV---KPELLVVTFGKGFGVSGAAVLCSSTVADYLLQFA-- 259
Query: 393 RS--YATSMPPPVAMQILTSMRIIMGLENGDE 422
R Y+TSMPP A + S+ +I E
Sbjct: 260 RHLIYSTSMPPAQAQALRASLAVIRSDEGDAR 291
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* Length = 401 | Back alignment and structure |
|---|
Score = 157 bits (400), Expect = 3e-44
Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 5/139 (3%)
Query: 285 LEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTG 344
L + P LI E ++SMDG + EI + ++ A Y+DE H++G GP G
Sbjct: 167 LRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRG 226
Query: 345 RGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSY--ATSMPPP 402
GV E G+ R +DI GT K++G GGY+A S +D +R S+ + +TS+PP
Sbjct: 227 AGVAERDGLMHR-IDIFNGTLAKAYGVFGGYIAASARMVDAVR--SYAPGFIFSTSLPPA 283
Query: 403 VAMQILTSMRIIMGLENGD 421
+A S+ + E
Sbjct: 284 IAAGAQASIAFLKTAEGQK 302
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.5 bits (117), Expect = 2e-06
Identities = 43/307 (14%), Positives = 92/307 (29%), Gaps = 92/307 (29%)
Query: 72 AIITIKDRETPDYGW-TFKYTGTE------STCLNL-------ASYNYLG-FGENTGLCT 116
+II R+ W +K+ + + LN+ ++ L F + +
Sbjct: 331 SIIAESIRDGLAT-WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI-- 387
Query: 117 ERSKESVKQSGCALC-----SPSGEIASMLSKGASKSNILFQAHTNGFANGISKSNGLLS 171
+ L ++ +++K S L + I
Sbjct: 388 ---PTIL------LSLIWFDVIKSDVMVVVNKLHKYS--LVEKQPKESTISI-------- 428
Query: 172 SNGGYPDLY--EKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTG 229
P +Y K L ++R IVD +N P T D P + +Y
Sbjct: 429 -----PSIYLELKVKLENEYALHRSIVDHYNIPKTFDS-------DDLIPP--YLDQY-- 472
Query: 230 TESTCLNLASYNYLGF-------GENTGLCTE--------RSKESVKQSGCALCSPSAPS 274
Y+++G E L K ++ A + +
Sbjct: 473 ---------FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK--IRHDSTAWNASGSIL 521
Query: 275 SLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPE--IVR--LKNKYKAYLY 330
+ L+ + K R + +++ + ++ +++ ++R L + +A
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA--I 579
Query: 331 VDEAHSI 337
+EAH
Sbjct: 580 FEEAHKQ 586
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 3e-04
Identities = 19/125 (15%), Positives = 41/125 (32%), Gaps = 34/125 (27%)
Query: 193 RRIVDCF-NRPVTSVPGAIITIKDRETPDYGWTFKYTGTES--TCLNLASYNYLGFGENT 249
R+ ++ V + ++ +Y + TE + Y +
Sbjct: 65 LRLFWTLLSKQEEMVQKFV---EEVLRINYKFLMSPIKTEQRQPSMMTRMYIE----QRD 117
Query: 250 GLCTER---SKESVKQSGCALCSPSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIF 306
L + +K +V L+ L++ALLE +P ++++G
Sbjct: 118 RLYNDNQVFAKYNV---------SRLQPYLK--LRQALLELRPAKN-------VLIDG-- 157
Query: 307 SMDGS 311
+ GS
Sbjct: 158 -VLGS 161
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.93 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.91 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.9 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.87 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.86 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.86 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.86 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.85 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.8 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.8 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.78 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.78 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.78 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.77 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.76 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.76 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.76 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.76 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.75 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.75 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.75 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.74 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.74 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.73 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.73 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.73 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.73 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.57 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.72 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.72 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.71 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.66 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.66 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.65 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.65 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.64 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.64 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.62 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.61 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.6 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.6 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.57 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.54 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.51 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.49 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.48 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.47 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.46 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.46 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.46 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.45 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.44 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.43 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.42 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.42 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.41 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.41 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.4 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.39 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.38 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.36 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.36 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.36 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.36 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.36 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.05 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.35 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.34 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.34 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.34 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.33 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.33 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.33 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.32 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.31 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.31 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.31 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.3 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.3 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.3 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.3 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.3 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.29 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.29 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.29 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.29 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.29 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.29 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.28 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.28 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.27 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.27 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.27 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.27 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.27 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.26 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.26 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.26 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.26 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.26 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.26 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.26 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.26 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.26 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.25 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.25 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.25 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.25 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.25 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.24 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.24 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.24 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.24 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.24 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.23 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.23 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.23 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.23 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.23 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.22 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.22 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.22 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.22 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.22 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.21 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.2 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.19 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.18 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.18 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.18 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.18 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.18 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.17 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.17 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.17 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.17 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.17 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.17 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.16 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.14 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.13 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.13 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.13 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.13 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.12 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.1 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.1 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.1 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.1 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.09 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.09 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.08 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.08 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.07 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.07 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.07 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.06 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.05 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.05 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.05 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.04 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.04 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.03 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.03 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.03 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.03 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.03 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.02 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.02 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.01 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.0 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.0 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 98.99 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 98.99 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 98.99 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 98.98 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 98.98 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 98.98 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 98.98 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 98.98 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 98.98 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 98.98 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 98.97 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 98.95 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 98.9 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 98.9 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 98.89 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 98.89 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 98.88 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 98.88 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 98.87 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 98.86 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 98.83 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 98.83 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 98.83 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 98.82 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 98.81 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 98.8 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 98.78 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 98.77 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 98.77 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 98.75 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 98.74 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 98.73 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 98.73 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 98.69 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 98.69 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 98.68 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 98.68 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 98.68 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 98.68 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 98.65 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 98.63 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 98.59 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 98.56 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 98.55 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 98.54 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 98.52 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 98.52 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 98.5 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 98.48 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 98.43 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 98.37 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 98.33 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 98.32 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 98.3 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 98.26 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 98.25 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 98.21 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 98.12 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 97.99 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 97.66 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 97.49 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 97.29 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 97.19 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 97.07 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 96.74 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 96.67 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 96.37 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 94.42 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 93.69 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 93.37 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 93.11 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 84.37 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 81.78 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 80.86 |
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-26 Score=233.27 Aligned_cols=207 Identities=29% Similarity=0.478 Sum_probs=171.2
Q ss_pred hhhHHHHHHHHhh-cccccccccCcccc-cCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHH
Q psy2206 178 DLYEKFVLFYSRY-VYRRIVDCFNRPVT-SVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTER 255 (430)
Q Consensus 178 ~l~~~~~~~~~~~-~~~~~~d~~~r~i~-~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a 255 (430)
.+.+.+++....+ .+|.+ +.+. ++.|+++++ + | +++|||++|+|||+..++ .++++
T Consensus 29 ~~~~~~~~~~~~g~~~r~~-----~~~~~~~~g~~~~~-~-------------g--~~~id~~~~~~lg~~~~~-~v~~a 86 (427)
T 2w8t_A 29 GLIAERQKLLDSGVTDPFA-----IVMEQVKSPTEAVI-R-------------G--KDTILLGTYNYMGMTFDP-DVIAA 86 (427)
T ss_dssp HHHHHHHHHHHTTCCCTTC-----CCCSEEEETTEEEE-T-------------T--EEEEECSCCCTTCGGGCH-HHHHH
T ss_pred HHHHHHHHHHHcCCcceee-----eeccccCCCceEee-C-------------C--ceEEEEECcccccCCCCH-HHHHH
Confidence 4566677777777 65544 4677 889999987 4 5 889999999999998764 78999
Q ss_pred HHHHHHHhCCCCCCCCC---------------------------------------------------------------
Q psy2206 256 SKESVKQSGCALCSPSA--------------------------------------------------------------- 272 (430)
Q Consensus 256 ~~~ai~~yG~g~~~sr~--------------------------------------------------------------- 272 (430)
+.+++++||.+.++++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~al~~l~~~gd~vl~~~~~h~~~~~~~~ 166 (427)
T 2w8t_A 87 GKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTLAGKGEYVILDADSHASIYDGCQ 166 (427)
T ss_dssp HHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHSCTTCEEEEETTCCHHHHHHHH
T ss_pred HHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHH
Confidence 99999999876655433
Q ss_pred -------------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccc
Q psy2206 273 -------------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGA 339 (430)
Q Consensus 273 -------------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~ 339 (430)
+++|+++|++. .+.++++|++++++||+|.+.|+++|+++|++||++||+||+|+.|+
T Consensus 167 ~~g~~~~~~~~~d~~~le~~l~~~---------~~~~~~~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~ 237 (427)
T 2w8t_A 167 QGNAEIVRFRHNSVEDLDKRLGRL---------PKEPAKLVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGF 237 (427)
T ss_dssp HSCSEEEEECTTCHHHHHHHHHTS---------CSSSCEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred HcCCeeEEeCCCCHHHHHHHHHhc---------cCCCCeEEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccc
Confidence 15556555431 01146899999999999999999999999999999999999999999
Q ss_pred cCCCCCccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 340 LGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 340 lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
++++|+++.+.+++.+ ++||+++||||++|++|||+++++++++.++...+++.++++++|++++++.++|+.+..
T Consensus 238 ~~~~g~~~~~~~~~~~-~~di~~~s~sK~~g~~gG~v~~~~~l~~~l~~~~~~~~~~~~~~~~~~aa~~~al~~~~~ 313 (427)
T 2w8t_A 238 FGPNGRGVYEAQGLEG-QIDFVVGTFSKSVGTVGGFVVSNHPKFEAVRLACRPYIFTASLPPSVVATATTSIRKLMT 313 (427)
T ss_dssp SSTTSCCHHHHTTCTT-CCSEEEEESSSTTCSCCEEEEECCTTGGGGGGTCHHHHSSCCCCHHHHHHHHHHHHHHTS
T ss_pred cCCCCCchHhhcCCCc-CCcEEEecchhhhccCCCEEEeCHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHhc
Confidence 9988889888888864 679999999999999999999999999998876556777888999999998999998753
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-24 Score=216.96 Aligned_cols=172 Identities=26% Similarity=0.394 Sum_probs=146.7
Q ss_pred cceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC---------------------------------------
Q psy2206 232 STCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA--------------------------------------- 272 (430)
Q Consensus 232 ~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~--------------------------------------- 272 (430)
+++|||+||||||+..+| .+++++.+++++||.+.++++.
T Consensus 59 ~~~ld~~s~~~l~~~~~p-~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~l~ 137 (409)
T 3kki_A 59 PDDIILQSNDYLALANHP-LIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQ 137 (409)
T ss_dssp TTSEECCCSCTTCCTTCH-HHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSEEEEESCHHHHHHHHHH
T ss_pred CceEEeeccCccCCcCCH-HHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCeEEEecchHHHHHHHHH
Confidence 889999999999999874 8999999999998765443321
Q ss_pred -------------------------------------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCH
Q psy2206 273 -------------------------------------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRL 315 (430)
Q Consensus 273 -------------------------------------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L 315 (430)
+++||+++++. ++++|+++++++++|.+.|+
T Consensus 138 ~~~~~gd~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~le~~l~~~------------~~~~vi~~~~~nptG~~~~l 205 (409)
T 3kki_A 138 TICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRMLIQRH------------GPGIIVVDSIYSTLGTIAPL 205 (409)
T ss_dssp HHCCTTCEEEEETTSCHHHHHHHHHTTCEEEEECTTCHHHHHHHHHHH------------CSCEEEEESBCTTTCCBCCH
T ss_pred HhcCCCCEEEECCCcCHHHHHHHHHcCCeEEEecCCCHHHHHHHHHhc------------CCeEEEECCCCCCCCCcCCH
Confidence 15566666542 24689999999999999999
Q ss_pred HHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccc
Q psy2206 316 PEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSY 395 (430)
Q Consensus 316 ~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~ 395 (430)
++|+++|++||++||+||+|+.|++|++|.+..+.+++. .++||+++||||++|+.|||+++++++++.++.....+.+
T Consensus 206 ~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~-~~~di~~~s~sK~~~~~gg~v~~~~~~~~~~~~~~~~~~~ 284 (409)
T 3kki_A 206 AELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLT-REVHFMTASLAKTFAYRAGAIWCNNEVNRCVPFISYPAIF 284 (409)
T ss_dssp HHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCG-GGCSEEEEESSSTTCSSCEEEEESSSGGGTHHHHCHHHHH
T ss_pred HHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCC-CCCCEEEeecchhhCCCceEEEECHHHHHHHHHhCcCccc
Confidence 999999999999999999999999999888887777775 4679999999999998899999999999998887767778
Q ss_pred cCCCcHHHHHHHHHHHHHHHcc
Q psy2206 396 ATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 396 s~s~~P~~~aaalaaL~~l~~~ 417 (430)
+++++|..+++++++++.+++.
T Consensus 285 ~~~~~~~~~aa~~aal~~~~~~ 306 (409)
T 3kki_A 285 SSTLLPYEAAGLETTLEIIESA 306 (409)
T ss_dssp SBCCCHHHHHHHHHHHHHHHHC
T ss_pred cCCCcHHHHHHHHHHHHHHhcC
Confidence 8888999999999999988654
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-23 Score=206.65 Aligned_cols=207 Identities=32% Similarity=0.537 Sum_probs=170.7
Q ss_pred hhHHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHH
Q psy2206 179 LYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKE 258 (430)
Q Consensus 179 l~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ 258 (430)
+.+.+++...+++|+.. +++.++.|.++++ + | +++|||++|+|+|+..+ +.+++++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~-----~~~~~~~g~~v~~-~-------------g--~~~id~~~~~~~g~~~~-~~v~~a~~~ 68 (399)
T 3tqx_A 11 LNKEIEGLKKAGLYKSE-----RIITSPQNAEIKV-G-------------E--KEVLNFCANNYLGLADH-PALIKTAQT 68 (399)
T ss_dssp HHHHHHHHHTTTCCCCC-----CCBCSCSSSEEEE-T-------------T--EEEEECSSCCTTSCTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHcCCcccc-----ccccCCCCceEee-C-------------C--eeEEEeeccCcccccCC-HHHHHHHHH
Confidence 34567788888888766 6889999999987 3 4 88999999999998655 588999999
Q ss_pred HHHHhCCCCCCCCC------------------------------------------------------------------
Q psy2206 259 SVKQSGCALCSPSA------------------------------------------------------------------ 272 (430)
Q Consensus 259 ai~~yG~g~~~sr~------------------------------------------------------------------ 272 (430)
++++|+.+.+.++.
T Consensus 69 ~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~l~~~~~~gd~v~~~~~~~~~~~~~~~~~g 148 (399)
T 3tqx_A 69 VVEQYGFGMASVRFICGTQTIHKELEKDISEFLGTDDTILYSSCFDANGGLFETLLGPEDAIISDELNHASIIDGIRLCK 148 (399)
T ss_dssp HHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHSCC
T ss_pred HHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCCCcEEEECchHHHHHHHHHHhcCCCCEEEECCcccHHHHHHHHHcC
Confidence 99998876554432
Q ss_pred ----------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCC
Q psy2206 273 ----------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGP 342 (430)
Q Consensus 273 ----------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~ 342 (430)
+++|+++|++.... ..++++|+++++++++|.+.|+++|+++|++||++||+||+|+.|+++.
T Consensus 149 ~~~~~~~~~d~~~l~~~l~~~~~~-------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~ 221 (399)
T 3tqx_A 149 AQRYRYKNNAMGDLEAKLKEADEK-------GARFKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGE 221 (399)
T ss_dssp SEEEEECTTCTTHHHHHHHHHHTT-------TCSSEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSST
T ss_pred CceeEeCCCCHHHHHHHHHhhhcc-------CCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCC
Confidence 25677777653210 1257899999999999999999999999999999999999999888888
Q ss_pred CCCccceecCCCCCCccEEEeCccchhc-cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHH
Q psy2206 343 TGRGVTEYFGIDPREVDILMGTYTKSFG-SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 343 ~GrG~~e~~g~~~~~~dIv~~TlSKa~G-~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
.+.+..+.+++. .+.||+++||||++| ++|||+++++++++.+......+.+++++++..+++++++++.+.
T Consensus 222 ~~~~~~~~~~~~-~~~di~~~s~sK~~~g~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (399)
T 3tqx_A 222 NGRGTPEYCGVA-DRVDILTGTLGKALGGASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLK 294 (399)
T ss_dssp TSCCHHHHHTCT-TCCSEEEEESSSSSCSSCCEEEEECHHHHHHHHHHCHHHHSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCchHHhhCCC-CCCcEEEecchHhcccCceEEEEcCHHHHHHHHHhCcceeccCCCcHHHHHHHHHHHHHHh
Confidence 888877777763 356899999999998 999999999999999988766666777889999999999998873
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=7.4e-22 Score=198.52 Aligned_cols=211 Identities=27% Similarity=0.466 Sum_probs=155.6
Q ss_pred hhHHHHHHHHhhcccccccccCcccccCCC--CEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHH
Q psy2206 179 LYEKFVLFYSRYVYRRIVDCFNRPVTSVPG--AIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERS 256 (430)
Q Consensus 179 l~~~~~~~~~~~~~~~~~d~~~r~i~~~~g--~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~ 256 (430)
+.+.++.+...++||.+.+ +....+ +.+... ..+ =+| +++++|++|+|+|++.+| .+++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~fp~~~~~---~~~------~~g--~~~i~~~~~~~~~~~~~p-~v~~a~ 69 (401)
T 2bwn_A 7 LDKAIQKLHDEGRYRTFID-----IEREKGAFPKAQWN---RPD------GGK--QDITVWCGNDYLGMGQHP-VVLAAM 69 (401)
T ss_dssp HHHHHHHHHHTTCCCCCCE-----EEECTTSTTEEEEE---CTT------SCE--EEEEECSCSCTTSGGGCH-HHHHHH
T ss_pred HHHHHHHHHhcCCceehhh-----hhcccccccceecc---ccc------CCC--CcEEEeeCCCcccCCCCH-HHHHHH
Confidence 3455777888999998743 322222 222210 000 014 789999999999998765 799999
Q ss_pred HHHHHHhCCCCCCCCC----------------------------------------------------------------
Q psy2206 257 KESVKQSGCALCSPSA---------------------------------------------------------------- 272 (430)
Q Consensus 257 ~~ai~~yG~g~~~sr~---------------------------------------------------------------- 272 (430)
.+++++++.+.++++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~ 149 (401)
T 2bwn_A 70 HEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGI 149 (401)
T ss_dssp HHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHH
T ss_pred HHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECCcHHHHHHHHHHHhcCCCCCEEEECchhhHHHHHHH
Confidence 9999988764432221
Q ss_pred --------------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEecccccc
Q psy2206 273 --------------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIG 338 (430)
Q Consensus 273 --------------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G 338 (430)
+++||+++++. .+.++++|+++++++++|.+.|+++|+++|++||++||+||+|+.|
T Consensus 150 ~~~g~~~~~v~~~d~~~le~~l~~~---------~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g 220 (401)
T 2bwn_A 150 KRNAGPKRIFRHNDVAHLRELIAAD---------DPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVG 220 (401)
T ss_dssp HHSCCCEEEECTTCHHHHHHHHHHS---------CTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred HHcCCeEEEEcCCCHHHHHHHHHhh---------ccCCceEEEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEecccccc
Confidence 13344444321 0124678999999999999999999999999999999999999999
Q ss_pred ccCCCCCccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 339 ALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 339 ~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
.+|++|.|+...+++. .+.|++++||||+||++|||+++++++++.++.....+.++++.+|+.++++.++++.+.+
T Consensus 221 ~~~~~g~~~~~~~~~~-~~~~i~~~s~sK~~~~~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 297 (401)
T 2bwn_A 221 MYGPRGAGVAERDGLM-HRIDIFNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKT 297 (401)
T ss_dssp TSSTTSCCHHHHHTCG-GGCSEEEEESSSTTCSCCEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTS
T ss_pred ccCCCCceeeeccCcc-ccCcEEEeechhhccCCCCEEecCHHHHHHHHHhCcCceecCCCCHHHHHHHHHHHHHHHh
Confidence 9998888877555653 2468999999999999999999999999998875545556666677778888889988754
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-21 Score=193.03 Aligned_cols=207 Identities=30% Similarity=0.537 Sum_probs=160.4
Q ss_pred HHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHHH
Q psy2206 181 EKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESV 260 (430)
Q Consensus 181 ~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai 260 (430)
+.++.+...++|+. +..+.++.|+++++.+ | +++|||++++++|+..+ +.+++++.+++
T Consensus 14 ~~~~~~~~~~~~~~-----~~~~~~~~g~~~~~~~-------------g--~~~id~~~~~~~g~~~~-~~v~~a~~~~~ 72 (401)
T 1fc4_A 14 NDLETARAEGLFKE-----ERIITSAQQADITVAD-------------G--SHVINFCANNYLGLANH-PDLIAAAKAGM 72 (401)
T ss_dssp HHHHHHHHTTCCCC-----CCCBCSCSSSEEEBTT-------------S--CEEEECCCSCTTSCTTC-HHHHHHHHHHH
T ss_pred HHHHHHHhcCCeee-----eeeeccCCCceEEeeC-------------C--ccEEEeeccCcccccCC-HHHHHHHHHHH
Confidence 34555556666653 3678999999998643 5 78999999999997545 57899999999
Q ss_pred HHhCCCCCCCCC--------------------------------------------------------------------
Q psy2206 261 KQSGCALCSPSA-------------------------------------------------------------------- 272 (430)
Q Consensus 261 ~~yG~g~~~sr~-------------------------------------------------------------------- 272 (430)
++|+.+.++++.
T Consensus 73 ~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~ 152 (401)
T 1fc4_A 73 DSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAK 152 (401)
T ss_dssp HHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHTSCSE
T ss_pred HHhCCCCCCCCcccCCcHHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHHcCCCCEEEEcchhHHHHHHHHHHcCCc
Confidence 888865432211
Q ss_pred --------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCC
Q psy2206 273 --------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTG 344 (430)
Q Consensus 273 --------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~G 344 (430)
+++|+++|++.... ..++++|+++++.+++|.+.|+++|+++|++||++||+||+|++|+.+++|
T Consensus 153 ~~~~~~~d~~~l~~~l~~~~~~-------~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g 225 (401)
T 1fc4_A 153 RYRYANNDMQELEARLKEAREA-------GARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENG 225 (401)
T ss_dssp EEEECTTCHHHHHHHHHHHHHT-------TCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTS
T ss_pred eEEECCCCHHHHHHHHHHhhcc-------CCCceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCC
Confidence 15666666542100 003568899999999999999999999999999999999999888777667
Q ss_pred CccceecCCCCCCccEEEeCccchh-ccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 345 RGVTEYFGIDPREVDILMGTYTKSF-GSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 345 rG~~e~~g~~~~~~dIv~~TlSKa~-G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
++..+.+++.+ +.||++.||||++ |..|||+++++++++.++....++.++.+++++.++++.++|+.+..
T Consensus 226 ~~~~~~~~~~~-~~di~~~s~sK~~~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~ 297 (401)
T 1fc4_A 226 RGSHEYCDVMG-RVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEA 297 (401)
T ss_dssp CCHHHHTTCTT-CCSEEEEESSSTTCSSSCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHT
T ss_pred CccHHHcCCCc-CCcEEEecchhhccCCCCEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhc
Confidence 77666667654 6799999999999 88899999999999998875544555777889999999999988754
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-21 Score=191.28 Aligned_cols=186 Identities=28% Similarity=0.435 Sum_probs=146.5
Q ss_pred CcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC-------
Q psy2206 200 NRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSA------- 272 (430)
Q Consensus 200 ~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~------- 272 (430)
+..+.++.|.+++.. | +++|||++|+++|+..+ +.+++++.++++++|.+.+.++.
T Consensus 23 ~~~~~~~~g~~~~~~--------------g--~~~id~~~~~~~~~~~~-~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~ 85 (384)
T 1bs0_A 23 RYPVAQGAGRWLVAD--------------D--RQYLNFSSNDYLGLSHH-PQIIRAWQQGAEQFGIGSGGSGHVSGYSVV 85 (384)
T ss_dssp CCCCSBCSSSEEEET--------------T--EEEEECSCCCTTSGGGC-HHHHHHHHHHHHHHCSCCCSBTTTTCCCHH
T ss_pred cccccCCCCceEEEC--------------C--ceEEEeeccCccCCCCC-HHHHHHHHHHHHHhCCCCCCcCcccCChHH
Confidence 356788999999843 4 78999999999998655 47899999999887754332221
Q ss_pred ---------------------------------------------------------------------HHHHHHHHHHH
Q psy2206 273 ---------------------------------------------------------------------PSSLEAGLQKA 283 (430)
Q Consensus 273 ---------------------------------------------------------------------~~~Le~~L~~~ 283 (430)
+++|+++|++.
T Consensus 86 ~~~l~~~la~~~g~~~~i~~~sGt~a~~~~~~~~~~~gd~v~~~~~~~~~~~~~~~~~g~~~~~~~~~d~~~l~~~l~~~ 165 (384)
T 1bs0_A 86 HQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRRFAHNDVTHLARLLASP 165 (384)
T ss_dssp HHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSSSEEEEECTTCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhCCCCcEEEEcccccHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHhc
Confidence 14444444321
Q ss_pred hhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEe
Q psy2206 284 LLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMG 363 (430)
Q Consensus 284 ~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~ 363 (430)
..++++|+++++.+++|.+.|+++|+++|++||++||+||+|+.|+++++|.++.+.++. ..||+++
T Consensus 166 ----------~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~---~~di~~~ 232 (384)
T 1bs0_A 166 ----------CPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKV---KPELLVV 232 (384)
T ss_dssp ----------CSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTC---CCSEEEE
T ss_pred ----------CCCCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCC---CCcEEEe
Confidence 113678999999999999999999999999999999999999988877666665555553 3589999
Q ss_pred CccchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHH
Q psy2206 364 TYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 364 TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
||||++|.+|||+++++++++.++.....+.++++++++.++++.++|+.+.
T Consensus 233 s~sK~~~~~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 284 (384)
T 1bs0_A 233 TFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIR 284 (384)
T ss_dssp ESSSTTSSCCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHH
T ss_pred eccchhhccCcEEEeCHHHHHHHHHhchhhhcCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999887554555566788998888888998876
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.86 E-value=6.3e-21 Score=191.56 Aligned_cols=204 Identities=31% Similarity=0.589 Sum_probs=157.1
Q ss_pred hHHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHHH
Q psy2206 180 YEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKES 259 (430)
Q Consensus 180 ~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~a 259 (430)
++.++++...++|+.. .++.+++|++++ .+ | +++|||++++++|+..+ +.+++++.++
T Consensus 12 ~~~~~~~~~~~~~~~~-----~~~~~~~g~~~~-~~-------------g--~~~idl~~~~~~~~~~~-~~v~~a~~~~ 69 (398)
T 3a2b_A 12 FKIVEELKAKGLYAYF-----RPIQSKQDTEVK-ID-------------G--RRVLMFGSNSYLGLTTD-TRIIKAAQDA 69 (398)
T ss_dssp CCHHHHHHHTTCCCSS-----CCBCSCSSSEEE-ET-------------T--EEEEECSCSCTTCGGGC-HHHHHHHHHH
T ss_pred HHHHHHHHhcCcccce-----eeecCCCCceEE-EC-------------C--ceEEEeecccccCCCCC-HHHHHHHHHH
Confidence 3446677788887633 688999999999 43 4 78999999999888655 4789999999
Q ss_pred HHHhCCCCCCCC-------C------------------------------------------------------------
Q psy2206 260 VKQSGCALCSPS-------A------------------------------------------------------------ 272 (430)
Q Consensus 260 i~~yG~g~~~sr-------~------------------------------------------------------------ 272 (430)
+++++.+.++.+ .
T Consensus 70 ~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~v~~~~ggt~a~~~~~~~~~~~gd~V~~~~p~~~~~~~~~~~~g~ 149 (398)
T 3a2b_A 70 LEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCLMGRNDYILLDERDHASIIDGSRLSFS 149 (398)
T ss_dssp HHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHSSCTTCEEEEETTCCHHHHHHHHHSSS
T ss_pred HHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHHhCCCCEEEECCccCHHHHHHHHHcCC
Confidence 988664332111 1
Q ss_pred ---------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCC
Q psy2206 273 ---------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPT 343 (430)
Q Consensus 273 ---------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~ 343 (430)
+++|++++++. .+.++++|+++++++++|.+.|+++|+++|++||++||+||+|+.+++++.
T Consensus 150 ~~~~v~~~d~~~l~~~l~~~---------~~~~~~~v~~~~~~nptG~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~ 220 (398)
T 3a2b_A 150 KVIKYGHNNMEDLRAKLSRL---------PEDSAKLICTDGIFSMEGDIVNLPELTSIANEFDAAVMVDDAHSLGVIGHK 220 (398)
T ss_dssp EEEEECTTCHHHHHHHHHTS---------CSSSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGG
T ss_pred ceEEeCCCCHHHHHHHHHhh---------ccCCceEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCCcccccCCC
Confidence 14455555431 001467899999999999999999999999999999999999998888766
Q ss_pred CCccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHH
Q psy2206 344 GRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 344 GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
+..+.+.+++. +.+||+++||||++|++|||+++++++++.++.....+.++++.+|.+++++.++|+.+.
T Consensus 221 ~~~~~~~~~~~-~~~di~~~s~sK~~~~~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~l~~~~ 291 (398)
T 3a2b_A 221 GAGTASHFGLN-DDVDLIMGTFSKSLASLGGFVAGDADVIDFLKHNARSVMFSASMTPASVASTLKALEIIQ 291 (398)
T ss_dssp GCCHHHHHTCG-GGCSEEEEESSSTTCSSCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHH
T ss_pred CCchHhhcCCC-cCCeEEEecccccccCCCcEEEeCHHHHHHHHHhcccceecCCCCHHHHHHHHHHHHHHh
Confidence 66665555653 245899999999999889999999999999887544455677788888887888887764
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-21 Score=202.18 Aligned_cols=194 Identities=16% Similarity=0.155 Sum_probs=145.5
Q ss_pred cCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecC-CCccCCCCCcHHHHHHHHHHHHHhCCCCCCCCC-----
Q psy2206 199 FNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS-YNYLGFGENTGLCTERSKESVKQSGCALCSPSA----- 272 (430)
Q Consensus 199 ~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S-~nYLGl~~~~~~v~~a~~~ai~~yG~g~~~sr~----- 272 (430)
+|..+.++.|++|++.| | +++|||.+ +--+.|++.+|.|++|+++++++ |...+.+..
T Consensus 69 ~P~~i~~a~G~~l~D~d-------------G--~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~-~~~~~~~~~~~~~l 132 (454)
T 4ao9_A 69 FPLTIARGEGAALWDAD-------------G--HRYADFIAEYTAGVYGHSAPEIRDAVIEAMQG-GINLTGHNLLEGRL 132 (454)
T ss_dssp CCCEEEEEETTEEEETT-------------C--CEEEESSGGGGTTTTCSCCHHHHHHHHHHHHT-CSCCCSEESSHHHH
T ss_pred CCccEEEeecCEEEECC-------------C--CEEEEccccHHhhcccCCCHHHHHHHHHHHhc-CCCccCCcHHHHHH
Confidence 45667899999999875 7 89999954 33444555557899999999886 333322211
Q ss_pred --------------------------------------------------------------------------HHHHHH
Q psy2206 273 --------------------------------------------------------------------------PSSLEA 278 (430)
Q Consensus 273 --------------------------------------------------------------------------~~~Le~ 278 (430)
.+++++
T Consensus 133 ae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~nd~~~l~~ 212 (454)
T 4ao9_A 133 ARLICERFPQIEQLRFTNSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYNDAQTARA 212 (454)
T ss_dssp HHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTTCHHHHHH
T ss_pred HHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcccCCeEEEEeCCcCCccccccccccCccCCCCcccCCCchHHHHHH
Confidence 155666
Q ss_pred HHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCC
Q psy2206 279 GLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGI 353 (430)
Q Consensus 279 ~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~ 353 (430)
+|++. ..+.++||+|+|+++.|.+.| |++|++||++||++||+||+++ | ++|.+. .+++|+
T Consensus 213 ~l~~~----------~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t-G---R~G~~~a~e~~gv 278 (454)
T 4ao9_A 213 QIERH----------GPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT-S---RLAPHGLANKLGI 278 (454)
T ss_dssp HHHHT----------GGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG-G---GGSTTCHHHHHTC
T ss_pred HHhhc----------CCceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc-C---CCccccchhccCC
Confidence 66552 125789999999999999998 9999999999999999999995 4 556554 488999
Q ss_pred CCCCccEEEeCccchhc--cccceeecCHHHHHHHHhcCCcc--cccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 354 DPREVDILMGTYTKSFG--SMGGYVAGSKSTIDYIRANSHVR--SYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 354 ~~~~~dIv~~TlSKa~G--~~GG~v~gs~~li~~l~~~~~~~--~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
.| ||+ ||+|++| .+.|++++++++++.+......+ ..|.+.+|+.+++++++|+++++++-.+.++++.
T Consensus 279 ~P---Di~--t~gK~lggG~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~AAala~L~~l~~~~~~~~~~~~g 351 (454)
T 4ao9_A 279 RS---DLT--TLGKYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERG 351 (454)
T ss_dssp CC---SEE--EEEGGGGTTSSCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CC---cEE--EeccccCCCCcceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhccChhHHHHHHH
Confidence 86 777 9999995 45688889999999886533222 2355679999999999999997765555554443
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-19 Score=185.71 Aligned_cols=123 Identities=29% Similarity=0.335 Sum_probs=96.9
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCC-ccceecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR-GVTEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr-G~~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.++++||+|++++++|.+.| |++|+++|++||++||+||+|+ | +|++|. +.++++++.| ||+ ||||++
T Consensus 222 ~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~-g-fgr~G~~~a~~~~~v~p---di~--t~sK~l 294 (472)
T 3hmu_A 222 NRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVIC-G-FGRTGNWFGTQTMGIRP---HIM--TIAKGL 294 (472)
T ss_dssp GGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-T-TTTTSSSCHHHHHTCCC---SEE--EECGGG
T ss_pred CCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-C-CcccCccchhHHhCCCC---cee--eechhh
Confidence 35789999999999999998 9999999999999999999995 4 567774 3357788765 676 899999
Q ss_pred cccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHH
Q psy2206 370 GSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGN 424 (430)
Q Consensus 370 G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~ 424 (430)
|..| |++++++++++.+......+.++.+.+|+.+++++++|+++++++-.+..+
T Consensus 295 ~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~ 352 (472)
T 3hmu_A 295 SSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVR 352 (472)
T ss_dssp TTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred hcCCcceEEEEECHHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 7533 899999999999832211233466789999999999999987654434443
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.1e-19 Score=183.28 Aligned_cols=124 Identities=23% Similarity=0.306 Sum_probs=97.1
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ce-ecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TE-YFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e-~~g~~~~~~dIv~~TlSKa~ 369 (430)
++++||+|++++++|.+.+ |++|+++|++||++||+||+|+ | +|++|... ++ ++++.| ||+ ||||++
T Consensus 221 ~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~-g-~gr~G~~~~~~~~~~v~p---di~--t~sK~l 293 (476)
T 3i5t_A 221 TIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVT-G-FGRCGEWFASEKVFGVVP---DII--TFAKGV 293 (476)
T ss_dssp GEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-T-TTTTSSSCHHHHTTCCCC---SEE--EECGGG
T ss_pred CEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-C-CccccCceeeecccCCCc---chh--hhhhhh
Confidence 5689999999999998777 9999999999999999999996 4 67777643 46 788765 666 899999
Q ss_pred cc---ccceeecCHHHHHHHHhcC---C--cccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 370 GS---MGGYVAGSKSTIDYIRANS---H--VRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 370 G~---~GG~v~gs~~li~~l~~~~---~--~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
|. +-|++++++++++.+.... . .+.++.+.+|+.+++++++|+++++++-.+..+++
T Consensus 294 ~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~ 358 (476)
T 3i5t_A 294 TSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREM 358 (476)
T ss_dssp GTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred cCCCcCeEEEEECHHHHHHHhcCCcccccccccCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 74 2278999999999887531 1 22246678999999999999998765444444433
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-18 Score=176.90 Aligned_cols=124 Identities=19% Similarity=0.242 Sum_probs=96.0
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCC-ccceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR-GVTEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr-G~~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++||+|++++++|.+.+ |++|+++|++||++||+||+|+ | +|++|. +.++++++.| ||+ ||||+++
T Consensus 221 ~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g-~gr~g~~~~~~~~~~~p---di~--t~sK~l~ 293 (460)
T 3gju_A 221 TIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVT-G-FGRLGTMFGSDHYGIKP---DLI--TIAKGLT 293 (460)
T ss_dssp GEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-T-TTTTSSSCHHHHHTCCC---SEE--EECGGGT
T ss_pred CEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCcccccchHhhcCCCC---Cee--eeehhhc
Confidence 5689999999999999887 9999999999999999999996 4 566664 3357778765 666 8999996
Q ss_pred c---ccceeecCHHHHHHHHhc-----CCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 371 S---MGGYVAGSKSTIDYIRAN-----SHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 371 ~---~GG~v~gs~~li~~l~~~-----~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
. +.|++++++++++.+... ...+..+.+.+|+.+++++++|+.+++++-.++.+++
T Consensus 294 gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~ 357 (460)
T 3gju_A 294 SAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGET 357 (460)
T ss_dssp TTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred CCCCCeEEEEECHHHHHHHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 5 338899999999998631 2222345667999999999999998765444444433
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.78 E-value=5.4e-18 Score=177.44 Aligned_cols=125 Identities=17% Similarity=0.191 Sum_probs=102.0
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.+.||+|+|.+..|.+.| |++|+++|++||++||+||++ +| ||++|.+++ +++|+.| ||+ |++|+++
T Consensus 236 ~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~-tG-fGRtG~~fa~e~~gv~P---Di~--t~~K~l~ 308 (473)
T 4e3q_A 236 TIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVI-CG-FGRTGNTWGCVTYDFTP---DAI--ISSKNLT 308 (473)
T ss_dssp GEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTT-TS-SSTTSSSCHHHHTTCCC---SEE--EECGGGG
T ss_pred ceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCcc-cc-CCcccchhHHHhcCCCC---ChH--Hhccccc
Confidence 5688999999999998876 999999999999999999998 46 799998775 8899987 787 9999995
Q ss_pred ---cccceeecCHHHHHHHHhc-----CCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 371 ---SMGGYVAGSKSTIDYIRAN-----SHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 371 ---~~GG~v~gs~~li~~l~~~-----~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
.+-|.+++++++.+.+... ...+.+|.+.+|+.|++++++|+++++++-.+..++..
T Consensus 309 gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g 373 (473)
T 4e3q_A 309 AGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLA 373 (473)
T ss_dssp TTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHH
T ss_pred CCCCCcccccccHHHHHHhccccccccccccCCCCCCCcchhhhhhhhhhhhccccHHHHHHHHH
Confidence 3557788999999877542 12234566789999999999999999887655555443
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.6e-18 Score=178.00 Aligned_cols=121 Identities=19% Similarity=0.225 Sum_probs=99.5
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~ 369 (430)
++.+.||+|+|.+..|.+.| |++|+++|++||++||+||++ +| +|++|.+++ +++|+.| ||+ ||+|++
T Consensus 225 ~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~-tG-~GRtG~~~a~e~~gv~P---Div--t~gK~l 297 (456)
T 4atq_A 225 DQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQ-SG-FCRTGEWFAVDHEGVVP---DII--TMAKGI 297 (456)
T ss_dssp GGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTT-TT-TTTTSSSSGGGGTTCCC---SEE--EECGGG
T ss_pred CceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccc-cc-cCCccccccccccCCCC---chh--hhhhcc
Confidence 35789999999999998876 999999999999999999998 46 689998765 8899976 787 999998
Q ss_pred c--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHH
Q psy2206 370 G--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGN 424 (430)
Q Consensus 370 G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~ 424 (430)
| .+-|.+++++++++.+....+. .|.+.+|+.|++++++|++|++++-.+..+
T Consensus 298 ggg~P~~av~~~~~i~~~~~~~~~~--~Tf~gnpla~aaala~L~~i~~~~l~~~~~ 352 (456)
T 4atq_A 298 AGGLPLSAITGRADLLDAVHPGGLG--GTYGGNPVACAAALAAIDTMEQHDLNGRAR 352 (456)
T ss_dssp GTTSSCEEEEEEHHHHTTSCTTSSC--CSSSSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred cCcCCceeeEecHHHHhcccccCCC--CCCCCChHHHHhhHHHHHHHhhccHHHHHH
Confidence 6 3447788999999887654433 456689999999999999998876544333
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.7e-18 Score=174.51 Aligned_cols=121 Identities=19% Similarity=0.252 Sum_probs=94.3
Q ss_pred ceEEEEEcCc-cCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEGI-FSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~v-~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
++++||+|++ +| +|.+.| |++|+++|++||++||+||+|+ | +|++|... .+++++.+ ||+ ||||++
T Consensus 215 ~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g-~g~~g~~~~~~~~~~~~---di~--t~sK~l 286 (452)
T 3n5m_A 215 TIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVIC-G-FGRTGKAFGFMNYDVKP---DII--TMAKGI 286 (452)
T ss_dssp GEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSGGGGTTCCC---SEE--EECGGG
T ss_pred CEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchh-C-CCcccccchhhhcCCCC---CEE--eecccc
Confidence 5689999999 89 999887 9999999999999999999996 4 56666543 56777754 666 899999
Q ss_pred cccc----ceeecCHHHHHHHHh--cCCc--ccccCCCcHHHHHHHHHHHHHHHccCCchHHHh
Q psy2206 370 GSMG----GYVAGSKSTIDYIRA--NSHV--RSYATSMPPPVAMQILTSMRIIMGLENGDEGNV 425 (430)
Q Consensus 370 G~~G----G~v~gs~~li~~l~~--~~~~--~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~ 425 (430)
++ | |++++++++++.+.. .... +..+.+.+|+.+++++++|+.+++++-.+..++
T Consensus 287 ~~-G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~ 349 (452)
T 3n5m_A 287 TS-AYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQ 349 (452)
T ss_dssp GT-TSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred cC-CCcceEEEEECHHHHHHHhhccCCCCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 86 6 999999999998854 1122 224566799999999999999876543334433
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.8e-18 Score=175.00 Aligned_cols=121 Identities=19% Similarity=0.269 Sum_probs=95.5
Q ss_pred ceEEEEEcC-ccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEG-IFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~-v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
++++||+|+ +++++|.+.| |++|+++|++||++||+||+|+ | +|++|..+ ++++++.| ||+ ||||++
T Consensus 233 ~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-g-~gr~G~~~a~~~~~~~p---dii--t~sK~l 305 (457)
T 3tfu_A 233 ELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIAT-G-FGRTGALFAADHAGVSP---DIM--CVGKAL 305 (457)
T ss_dssp GEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSTHHHHTCCC---SEE--EECGGG
T ss_pred CEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCcc-C-CccccchhHhHhcCCCc---eEE--EEChhh
Confidence 568999999 8999998887 9999999999999999999985 4 67777665 47778764 676 999999
Q ss_pred cc---ccceeecCHHHHHHHHhc-CC--cccccCCCcHHHHHHHHHHHHHHHccCCchHH
Q psy2206 370 GS---MGGYVAGSKSTIDYIRAN-SH--VRSYATSMPPPVAMQILTSMRIIMGLENGDEG 423 (430)
Q Consensus 370 G~---~GG~v~gs~~li~~l~~~-~~--~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~ 423 (430)
+. +.|++++++++++.+... .. .+..+.+.+|+.+++++++|+++++++-.++.
T Consensus 306 ~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~~n~~a~aaa~aaL~~~~~~~~~~~~ 365 (457)
T 3tfu_A 306 TGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRI 365 (457)
T ss_dssp GTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred hCCCcceEEEEEcHHHHHHhhccCCCceeEecCCCcCHHHHHHHHHHHHHHhhhHHHHHH
Confidence 64 457899999999999632 11 22345567999999999999998766433333
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=7.4e-18 Score=171.75 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=93.1
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++||+|++++++|.+.| |++|+++|++||++||+||+|+ |+ .+|... .+++++.+ ||+ ||||++|
T Consensus 202 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~-g~--~~g~~~~~~~~~~~~---di~--t~sK~~~ 273 (434)
T 3l44_A 202 EVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVIT-AF--RFMYGGAQDLLGVTP---DLT--ALGKVIG 273 (434)
T ss_dssp GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTT-TT--TSSSSCHHHHHTCCC---SEE--EEEGGGG
T ss_pred CEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-ce--eccccHHHHHcCCCC---Cee--ehhhhhc
Confidence 5789999999999999998 9999999999999999999995 53 455433 56777764 555 9999997
Q ss_pred c--ccceeecCHHHHHHHHhcCCc-ccccCCCcHHHHHHHHHHHHHHHccCCchHHHh
Q psy2206 371 S--MGGYVAGSKSTIDYIRANSHV-RSYATSMPPPVAMQILTSMRIIMGLENGDEGNV 425 (430)
Q Consensus 371 ~--~GG~v~gs~~li~~l~~~~~~-~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~ 425 (430)
. ..|++++++++++.+...... ...+.+.+|+.+++++++|+.+++++-.++.++
T Consensus 274 ~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~~~~~~~~~~~ 331 (434)
T 3l44_A 274 GGLPIGAYGGKKEIMEQVAPLGPAYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDE 331 (434)
T ss_dssp TTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHH
T ss_pred CCcCeeeEEEcHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 3 238889999999887653211 223556799999999999998866433333333
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.9e-18 Score=171.47 Aligned_cols=120 Identities=20% Similarity=0.261 Sum_probs=92.7
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCC-ccceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR-GVTEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr-G~~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++|++|+++++.|.+.| |++|+++|++||++||+||+|+ |+ ++|. +..+++++.| ||+ ||||++|
T Consensus 200 ~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~-g~--r~g~~~~~~~~~~~p---di~--t~sK~~~ 271 (429)
T 4e77_A 200 EVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMT-GF--RVALAGAQDYYHVIP---DLT--CLGKIIG 271 (429)
T ss_dssp TEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTT-BT--TTBTTCHHHHTTCCC---SEE--EEEGGGG
T ss_pred CEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-Cc--ccCcchHHHhcCCCC---Cee--eeccccc
Confidence 5789999999999999998 9999999999999999999997 54 3343 3456777754 665 9999997
Q ss_pred c--ccceeecCHHHHHHHHhcCCcccc-cCCCcHHHHHHHHHHHHHHHccCCchHH
Q psy2206 371 S--MGGYVAGSKSTIDYIRANSHVRSY-ATSMPPPVAMQILTSMRIIMGLENGDEG 423 (430)
Q Consensus 371 ~--~GG~v~gs~~li~~l~~~~~~~~~-s~s~~P~~~aaalaaL~~l~~~~~~~~~ 423 (430)
. +.|++++++++++.+......+.. +.+.+|+.+++++++|+.+++++-.++.
T Consensus 272 ~G~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~ 327 (429)
T 4e77_A 272 GGMPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQVGVYETL 327 (429)
T ss_dssp TTSCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTSTTHHHHH
T ss_pred CCCCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3 458999999999887753222222 3468999999999999998654333333
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.4e-18 Score=174.42 Aligned_cols=122 Identities=27% Similarity=0.292 Sum_probs=95.4
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCc-cceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRG-VTEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG-~~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++||+|++++++|.+.+ |++|+++|++||++||+||+|+ | +|++|.. ..+++++.| ||+ ||||+++
T Consensus 219 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g-~gr~G~~~~~~~~~~~p---di~--t~sK~l~ 291 (459)
T 4a6r_A 219 KVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVIC-G-FGRTGEWFGHQHFGFQP---DLF--TAAKGLS 291 (459)
T ss_dssp GEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-T-TTTTSSSSHHHHHTCCC---SEE--EECGGGG
T ss_pred CEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCcccccchHhhcCCCC---Cee--ehhhhhc
Confidence 5689999999999999988 9999999999999999999996 4 5666643 357778765 666 8999997
Q ss_pred ccc---ceeecCHHHHHHHHhcC-CcccccCCCcHHHHHHHHHHHHHHHccCCchHHH
Q psy2206 371 SMG---GYVAGSKSTIDYIRANS-HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGN 424 (430)
Q Consensus 371 ~~G---G~v~gs~~li~~l~~~~-~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~ 424 (430)
..| |++++++++++.+.... ..+..+.+.+|+.+++++++|+.+++++-.++.+
T Consensus 292 gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~ 349 (459)
T 4a6r_A 292 SGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVK 349 (459)
T ss_dssp TTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCCCCccceeeCHHHHHHhhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHH
Confidence 533 89999999999987321 1122355678999999999999987654444444
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-17 Score=171.70 Aligned_cols=123 Identities=16% Similarity=0.192 Sum_probs=95.1
Q ss_pred ceEEEEEcCcc-CCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEGIF-SMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~v~-sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
++++||+|+++ +++|.+.+ |++|+++|++||++||+||+|+ | +|.+|... .+++++.| ||+ ||||++
T Consensus 210 ~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~-g-~g~~g~~~a~~~~~~~~---di~--t~sK~l 282 (448)
T 3dod_A 210 EIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVAT-G-FGRTGKMFACEHENVQP---DLM--AAGKGI 282 (448)
T ss_dssp GEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTT-T-TTTTSSSSGGGGGTCCC---SEE--EECGGG
T ss_pred CEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEecccc-C-CCcccchhhhhhcCCCC---CEE--Eecccc
Confidence 56789999999 99999887 9999999999999999999996 4 56666654 57778764 665 899999
Q ss_pred cc---ccceeecCHHHHHHHHh---cC--CcccccCCCcHHHHHHHHHHHHHHHccCCchHHHh
Q psy2206 370 GS---MGGYVAGSKSTIDYIRA---NS--HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNV 425 (430)
Q Consensus 370 G~---~GG~v~gs~~li~~l~~---~~--~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~ 425 (430)
++ +.|++++++++++.+.. .. ..+..+.+.+|+.+++++++|+.+++++-.+..++
T Consensus 283 ~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~ 346 (448)
T 3dod_A 283 TGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAE 346 (448)
T ss_dssp GTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred cCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 73 33789999999998865 11 11234566799999999999999876543334433
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-17 Score=167.67 Aligned_cols=123 Identities=15% Similarity=0.233 Sum_probs=94.4
Q ss_pred CceEEEEEcCccC-CCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceec-CCCCCCccEEEeCccc
Q psy2206 295 WRKILIVVEGIFS-MDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYF-GIDPREVDILMGTYTK 367 (430)
Q Consensus 295 ~~~~lIi~E~v~s-m~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~-g~~~~~~dIv~~TlSK 367 (430)
.++++|++|++++ ++|.+.+ |++|+++|++||++||+||+|+ + +|.+|... .+++ ++.+ |++ ||||
T Consensus 189 ~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-~-~~~~g~~~~~~~~~~~~~---di~--t~sK 261 (430)
T 3i4j_A 189 ETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMS-G-MGRCGSPLALSRWSGVTP---DIA--VLGK 261 (430)
T ss_dssp GGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSGGGGTTTCCC---SEE--EECG
T ss_pred CCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-C-CCcccchhhhhhhcCCCC---cEE--EEcc
Confidence 3568999999999 9999888 9999999999999999999996 3 45555433 4666 6654 565 8999
Q ss_pred hhcccc----ceeecCHHHHHHHHhcCCc--ccccCCCcHHHHHHHHHHHHHHHccCCchHHHh
Q psy2206 368 SFGSMG----GYVAGSKSTIDYIRANSHV--RSYATSMPPPVAMQILTSMRIIMGLENGDEGNV 425 (430)
Q Consensus 368 a~G~~G----G~v~gs~~li~~l~~~~~~--~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~ 425 (430)
++++ | ||+++++++++.+...... +..+.+.+|+.+++++++|+.+.+++-.+..++
T Consensus 262 ~l~~-G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~ 324 (430)
T 3i4j_A 262 GLAA-GYAPLAGLLAAPQVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKE 324 (430)
T ss_dssp GGTT-TSSCCEEEEECHHHHHHHHHTTCBCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred cccC-CccccEEEEECHHHHHHHhccCCcccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 9985 6 8999999999999874321 123456789999999999998866543333333
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-17 Score=169.64 Aligned_cols=119 Identities=24% Similarity=0.156 Sum_probs=94.1
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCc-cceecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRG-VTEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG-~~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.++++|++|++++++|.+.| |++|+++|++||++||+||+|+ | +|++|.. ..+++++.+ |++ ||||++
T Consensus 200 ~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~-g-~g~~g~~~~~~~~~~~~---di~--s~sK~~ 272 (439)
T 3dxv_A 200 GSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKV-G-LARSGRLHCFEHEGFVP---DIL--VLGKGL 272 (439)
T ss_dssp TCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-C-TTTTSSSSGGGGTTCCC---SEE--EECGGG
T ss_pred CCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCcCchhhHHHhcCCCC---CEE--EEcchh
Confidence 35789999999999999999 9999999999999999999997 5 6777763 346777654 666 999999
Q ss_pred cc--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHH
Q psy2206 370 GS--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEG 423 (430)
Q Consensus 370 G~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~ 423 (430)
|+ ..||+++++++++.+.... +..+. .+|+.+++++++|+.+++++-.+..
T Consensus 273 ~~G~riG~~~~~~~~~~~~~~~~--~~~t~-~~~~~~~aa~aal~~~~~~~~~~~~ 325 (439)
T 3dxv_A 273 GGGLPLSAVIAPAEILDCASAFA--MQTLH-GNPISAAAGLAVLETIDRDDLPAMA 325 (439)
T ss_dssp GTTSCCEEEEEEHHHHTSCSSSS--CCTTT-TCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred cCCcceEEEEECHHHHhhhcCCC--cCCCc-ccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 84 2389999999998876543 23455 7889999999999988764333333
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=5.8e-18 Score=172.66 Aligned_cols=112 Identities=17% Similarity=0.245 Sum_probs=88.5
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++||+|++++++|.+.| |++|+++|++||++||+||+| .|+ .+|... .+++++.+ |++ ||||++|
T Consensus 200 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~-~g~--~~g~~~~~~~~~~~~---di~--t~sK~~~ 271 (429)
T 3k28_A 200 DIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVM-TGF--RVAYNCGQGYYGVTP---DLT--CLGKVIG 271 (429)
T ss_dssp GEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTT-TTT--TSSTTHHHHHHTCCC---SEE--EECGGGG
T ss_pred CEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-ccc--ccCcchHHHHhCCCC---cee--hhhhhhc
Confidence 5689999999999999998 999999999999999999999 464 555433 46777754 665 8999997
Q ss_pred c--ccceeecCHHHHHHHHhcCCc-ccccCCCcHHHHHHHHHHHHHHH
Q psy2206 371 S--MGGYVAGSKSTIDYIRANSHV-RSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 371 ~--~GG~v~gs~~li~~l~~~~~~-~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
+ ..||+++++++++.+...... +..+.+.+|+.+++++++|+.++
T Consensus 272 ~G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~ 319 (429)
T 3k28_A 272 GGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT 319 (429)
T ss_dssp TTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC
T ss_pred CCCCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH
Confidence 4 458999999999887653221 22355678999999999998663
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=170.72 Aligned_cols=195 Identities=17% Similarity=0.160 Sum_probs=139.8
Q ss_pred CcccccCCCCEEEEecCCCCCCCccccccCCccceeeecC-CCccCCCCCcHHHHHHHHHHHHHhCCCCC-C-CCC----
Q psy2206 200 NRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS-YNYLGFGENTGLCTERSKESVKQSGCALC-S-PSA---- 272 (430)
Q Consensus 200 ~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S-~nYLGl~~~~~~v~~a~~~ai~~yG~g~~-~-sr~---- 272 (430)
+..+.++.|+++++.+ | +++|||+| +++++|++.+|.+++++.+++++++..+. . ...
T Consensus 59 ~~~~~~~~G~~~~d~~-------------g--~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~~~~~~~~~~~~~~l 123 (439)
T 2oat_A 59 PVALERGKGIYLWDVE-------------G--RKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLTSRAFYNNVLGEY 123 (439)
T ss_dssp SCEEEEEEBTEEEETT-------------C--CEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCSCCCTTSEESSHHHH
T ss_pred CeeEEeeecCEEEECC-------------C--CEEEEccCCcccccCCCCCHHHHHHHHHHHHhcCcccCccCCHHHHHH
Confidence 4456788999998764 6 78999987 78889986667899999999987643211 1 111
Q ss_pred -------------------HHHHHHHHHHHh----------------h------c----------CC-----------CC
Q psy2206 273 -------------------PSSLEAGLQKAL----------------L------E----------GQ-----------PH 290 (430)
Q Consensus 273 -------------------~~~Le~~L~~~~----------------~------~----------~~-----------p~ 290 (430)
.+.++.+++... + + +. +.
T Consensus 124 ~~~la~~~g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~ 203 (439)
T 2oat_A 124 EEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPG 203 (439)
T ss_dssp HHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTT
T ss_pred HHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCC
Confidence 144444332210 0 0 00 00
Q ss_pred CC--------------CCCceEEEEEcCccCCCCccc----CHHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eec
Q psy2206 291 SG--------------KPWRKILIVVEGIFSMDGSIV----RLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYF 351 (430)
Q Consensus 291 ~~--------------~~~~~~lIi~E~v~sm~G~i~----~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~ 351 (430)
.. ...++++|++|++++++|.+. +|++|+++|++||++||+||+| .| +|++|.+++ +++
T Consensus 204 v~~~~~~d~~~le~~l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~-~g-~g~~g~~~~~~~~ 281 (439)
T 2oat_A 204 FDIIPYNDLPALERALQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQ-TG-LARTGRWLAVDYE 281 (439)
T ss_dssp EEEECSSCHHHHHHHTTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTT-TT-TTTTSSSSGGGGG
T ss_pred eEEeCCCCHHHHHHHhCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccc-cC-CccCCcchhHHHh
Confidence 00 012568999999999999877 6999999999999999999999 56 788887664 777
Q ss_pred CCCCCCccEEEeCccchhcc---ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 352 GIDPREVDILMGTYTKSFGS---MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~---~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
++.+ ||+ ||||++|. ++|++++++++++.+....+. .+.+.+|+.+++++++|+.+.+++
T Consensus 282 ~~~~---Di~--t~sK~l~~G~~~~G~v~~~~~~~~~l~~~~~~--~t~~~~~~~~aaa~aal~~~~~~~ 344 (439)
T 2oat_A 282 NVRP---DIV--LLGKALSGGLYPVSAVLCDDDIMLTIKPGEHG--STYGGNPLGCRVAIAALEVLEEEN 344 (439)
T ss_dssp TCCC---SEE--EECGGGGTTSSCCEEEEECHHHHTTSCTTSSC--CSSTTCHHHHHHHHHHHHHHHHTT
T ss_pred CCCC---cEE--EecccccCCCCCeEEEEECHHHHhccCCCCcc--cCCCcCHHHHHHHHHHHHHHhhhh
Confidence 7654 676 99999974 379999999998877653333 344578999999999999987653
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.2e-17 Score=167.88 Aligned_cols=122 Identities=20% Similarity=0.264 Sum_probs=92.9
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCC-ccceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR-GVTEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr-G~~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++|++|++++++|.+.| |++|+++|++||++||+||+|+ |+ .+|. +..+++++.+ ||+ ||||+++
T Consensus 199 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-g~--~~g~~~~~~~~~~~~---di~--t~sK~~~ 270 (427)
T 3fq8_A 199 EIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVIT-GF--RIAYGGVQEKFGVTP---DLT--TLGKIIG 270 (427)
T ss_dssp TEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-BT--TTBTTHHHHHTTCCC---SEE--EECGGGG
T ss_pred CEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-cc--ccCcchhhHhcCCCC---Chh--hhhhhhh
Confidence 5789999999999999999 9999999999999999999996 64 3443 3446777754 554 9999997
Q ss_pred c--ccceeecCHHHHHHHHhcCCc-ccccCCCcHHHHHHHHHHHHHHHccCCchHHHh
Q psy2206 371 S--MGGYVAGSKSTIDYIRANSHV-RSYATSMPPPVAMQILTSMRIIMGLENGDEGNV 425 (430)
Q Consensus 371 ~--~GG~v~gs~~li~~l~~~~~~-~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~ 425 (430)
. ..||+++++++++.+...... +..+.+.+|+.+++++++|+.+.+++-.++.++
T Consensus 271 ~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~ 328 (427)
T 3fq8_A 271 GGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQ 328 (427)
T ss_dssp TTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHH
T ss_pred CCcceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 3 358999999999987753211 122345689999999999998866543333333
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-17 Score=168.65 Aligned_cols=122 Identities=22% Similarity=0.237 Sum_probs=96.0
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.++++||+|+++++.|.+.| |++|+++|++||++||+||+|+ | +|.+|... .+++++.+ ||+ ||||++
T Consensus 226 ~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g-~g~~g~~~~~~~~~~~p---di~--t~sK~l 298 (451)
T 3oks_A 226 DNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQT-G-FARTGAMFACEHEGIDP---DLI--VTAKGI 298 (451)
T ss_dssp GGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-T-TTTTSSSSGGGGGTCCC---SEE--EECGGG
T ss_pred CCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc-C-CCccccchhhhhcCCCC---Cee--eehhhh
Confidence 35789999999999999988 9999999999999999999996 4 56666644 46777754 666 999999
Q ss_pred cc--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHh
Q psy2206 370 GS--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNV 425 (430)
Q Consensus 370 G~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~ 425 (430)
|+ .-|++++++++++.+.... +..+.+.+|+.+++++++|+.+++++-.++.++
T Consensus 299 ~~G~~iG~v~~~~~~~~~~~~~~--~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~ 354 (451)
T 3oks_A 299 AGGLPLSAVTGRAEIMDSPHVSG--LGGTYGGNPIACAAALATIETIESEGLVARAQQ 354 (451)
T ss_dssp GTTSSCEEEEEEHHHHTCSCTTS--BCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred hCCcceEEEEECHHHHhhhcCCC--cCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 75 3388999999998776533 334566789999999999999876543333333
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.9e-17 Score=169.72 Aligned_cols=121 Identities=21% Similarity=0.265 Sum_probs=94.9
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++||+|+++++.|.+.| |++|+++|++||++||+||+|+ | +|++|... .+++++.+ ||+ ||||++|
T Consensus 225 ~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-g-~g~~g~~~a~~~~~~~p---di~--t~sK~~~ 297 (453)
T 4ffc_A 225 SLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQT-G-FARTGAWFASEHEGIVP---DIV--TMAKGIA 297 (453)
T ss_dssp GEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSTHHHHTCCC---SEE--EECGGGG
T ss_pred CEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCcc-C-CCcccccchhhhcCCCc---chH--hhhhhhc
Confidence 5789999999999999987 9999999999999999999995 4 56666543 46777754 665 8999997
Q ss_pred c--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHh
Q psy2206 371 S--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNV 425 (430)
Q Consensus 371 ~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~ 425 (430)
+ ..||+++++++++.+....+ ..+.+.+|+.+++++++|+.+++++-.++.++
T Consensus 298 ~G~~~G~~~~~~~i~~~~~~~~~--~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~ 352 (453)
T 4ffc_A 298 GGMPLSAVTGRAELMDAVYAGGL--GGTYGGNPVTCAAAVAALGVMRELDLPARARA 352 (453)
T ss_dssp TTSSCEEEEEEHHHHTTSCTTSS--CCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CCcCeEEEEECHHHHhhhcccCc--CCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 6 23899999999988765432 34556789999999999998876544334433
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-17 Score=167.14 Aligned_cols=115 Identities=26% Similarity=0.361 Sum_probs=90.5
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCC-ccceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR-GVTEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr-G~~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++|++|++++++|.+.| +++|+++|++||++||+||+|+ |+ ..|. +..+++++.+ ||+ ||||++|
T Consensus 203 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~--~~g~~~~~~~~~~~~---di~--s~sK~l~ 274 (434)
T 2epj_A 203 RIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GF--RLGLEGAQGYFNIEG---DII--VLGKIIG 274 (434)
T ss_dssp GEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TT--TSSTTHHHHHHTCCC---SEE--EEEGGGG
T ss_pred CEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-ce--eCCcchhhHHhCCCC---Cee--eecchhc
Confidence 5689999999999999988 9999999999999999999997 64 2343 3346677654 665 9999998
Q ss_pred c--ccceeecCHHHHHHHHhcCCccc-ccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 371 S--MGGYVAGSKSTIDYIRANSHVRS-YATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 371 ~--~GG~v~gs~~li~~l~~~~~~~~-~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
. ++|++++++++++.+......+. .+.+.+|+.+++++++|+.+++++
T Consensus 275 ~G~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~~~ 325 (434)
T 2epj_A 275 GGFPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEEP 325 (434)
T ss_dssp TTSSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHHSC
T ss_pred CCcceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 6 66999999999987765222222 233678999999999999987643
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.1e-19 Score=186.41 Aligned_cols=123 Identities=16% Similarity=0.176 Sum_probs=94.6
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCc-cceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRG-VTEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG-~~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++||+|++++++|.+.| |++|+++|++||++||+||+|+ + +.|.+ ..+++++.| ||+ ||||++|
T Consensus 233 ~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~---r~g~~~a~~~~gv~p---Di~--t~sK~lg 303 (465)
T 2yky_A 233 DCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-S---RLSGGGAQEMLGISA---DLT--TLGKYIG 303 (465)
Confidence 5678999999999998887 9999999999999999999998 4 33433 456777654 665 9999997
Q ss_pred c--ccceeecCHHHHHHHHhc--C-CcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 371 S--MGGYVAGSKSTIDYIRAN--S-HVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 371 ~--~GG~v~gs~~li~~l~~~--~-~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
. +.||+++++++++.+... . ..+..+.+.+|+.+++++++|+++++++-.+..+++.
T Consensus 304 ~G~piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla~aAa~aaL~~l~~~~~~~~~~~~~ 365 (465)
T 2yky_A 304 GGMSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSASG 365 (465)
Confidence 5 348999999999988761 1 1122455789999999999999997765444444443
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-17 Score=168.22 Aligned_cols=114 Identities=21% Similarity=0.333 Sum_probs=92.2
Q ss_pred ceEEEEEcCccCCCCccc----CHHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIV----RLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~----~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++|++|++++++|.+. +|++|+++|++||++||+||+|+ | +|++|.+++ +.+++.+ ||+ ||||++|
T Consensus 212 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g-~g~~g~~~~~~~~~~~~---di~--t~sK~l~ 284 (433)
T 1z7d_A 212 NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-G-LGRTGKLLCVHHYNVKP---DVI--LLGKALS 284 (433)
T ss_dssp TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-T-TTTTSSSSGGGGGTCCC---SEE--EECGGGG
T ss_pred CEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCcc-C-CCcCCcchhhHhcCCCC---CEE--EECcccc
Confidence 467999999999999876 69999999999999999999995 6 788887654 6677654 676 9999997
Q ss_pred c---ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 371 S---MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 371 ~---~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
. ++|++++++++++.+....+. .+.+.+|+.+++++++|+.+++++
T Consensus 285 ~G~~~~G~v~~~~~~~~~l~~~~~~--~t~~~~~~~~aaa~aal~~~~~~~ 333 (433)
T 1z7d_A 285 GGHYPISAVLANDDIMLVIKPGEHG--STYGGNPLAASICVEALNVLINEK 333 (433)
T ss_dssp TTSSCCEEEEECHHHHTTCCTTCCC--CTTTTCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCeEEEEECHHHHhhhcccccc--ccCCCCHHHHHHHHHHHHHHHhcc
Confidence 3 368999999998877653333 344678999999999999987653
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.2e-17 Score=164.59 Aligned_cols=112 Identities=22% Similarity=0.328 Sum_probs=88.2
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCC-ccceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR-GVTEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr-G~~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++||+|++++++|.+.| |++|+++ ++||++||+||+|+ |+ ..|. +..+++++.+ ||+ ||||++|
T Consensus 199 ~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~-g~--~~g~~~~~~~~~~~~---di~--s~sK~l~ 269 (424)
T 2e7u_A 199 EIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMT-GF--RLAFGGATELLGLKP---DLV--TLGKILG 269 (424)
T ss_dssp GEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTT-TT--TSSTTHHHHHHTCCC---SEE--EECGGGG
T ss_pred CEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcc-cc--ccchhHHHHHhCCCc---chh--hhhhhhh
Confidence 4679999999999999888 9999999 99999999999997 64 2343 3346777654 665 9999997
Q ss_pred c--ccceeecCHHHHHHHHhcCCcccc-cCCCcHHHHHHHHHHHHHHHc
Q psy2206 371 S--MGGYVAGSKSTIDYIRANSHVRSY-ATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 371 ~--~GG~v~gs~~li~~l~~~~~~~~~-s~s~~P~~~aaalaaL~~l~~ 416 (430)
. +.||+++++++++.+......+.. +.+.+|+.+++++++|+.+++
T Consensus 270 ~G~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~ 318 (424)
T 2e7u_A 270 GGLPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEE 318 (424)
T ss_dssp TTSSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHH
T ss_pred CCcceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHh
Confidence 5 569999999999887653222222 336789999999999998866
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.7e-17 Score=164.13 Aligned_cols=119 Identities=20% Similarity=0.230 Sum_probs=91.7
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++|++|++++++|.+.| |++|.++|++||++||+||+|+ | +|.+|... .+++++.+ |++ ||||+++
T Consensus 179 ~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~-~-~g~~g~~~~~~~~~~~~---d~~--t~sK~~~ 251 (395)
T 3nx3_A 179 KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQC-G-MGRSGKFFAYEHAQILP---DIM--TSAKALG 251 (395)
T ss_dssp TEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSGGGGGTCCC---SEE--EECGGGT
T ss_pred CeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-C-CCcCCcchhHHhcCCCC---CEE--Eeccccc
Confidence 5789999999999999988 9999999999999999999996 3 45555543 45666643 665 8999996
Q ss_pred c--ccceeecCHHH-HHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHH
Q psy2206 371 S--MGGYVAGSKST-IDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEG 423 (430)
Q Consensus 371 ~--~GG~v~gs~~l-i~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~ 423 (430)
. ..|++++++++ ++.++...+. .+.+.+|+.+++++++|+.+.+++-.+..
T Consensus 252 ~G~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~aa~aal~~~~~~~~~~~~ 305 (395)
T 3nx3_A 252 CGLSVGAFVINQKVASNSLEAGDHG--STYGGNPLVCAGVNAVFEIFKEEKILENV 305 (395)
T ss_dssp TTSCCEEEEECHHHHHHHSCTTCCS--SCBSCCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred CCCceEEEEEchhhhhhhcCCcccC--CCCCCCHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4 34899999999 8877654322 34567899999999999988655433333
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-15 Score=154.09 Aligned_cols=115 Identities=23% Similarity=0.276 Sum_probs=89.6
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCc-cceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRG-VTEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG-~~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++|++|++++++|.+.+ |++|+++|++||++||+||+|+ + +|.+|.. ..+.+++.+ ||+ ||||+||
T Consensus 203 ~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-~-~g~~g~~~~~~~~~~~~---di~--s~sK~~~ 275 (433)
T 1zod_A 203 NLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQT-G-VGRTGTMFACQRDGVTP---DIL--TLSKTLG 275 (433)
T ss_dssp CEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSTHHHHTCCC---SEE--EECHHHH
T ss_pred CeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEecccc-C-CCcCchHhHHhhcCCCC---CEE--Eeccccc
Confidence 4578999999999998777 9999999999999999999997 3 4555543 335666643 555 9999998
Q ss_pred ccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 371 SMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 371 ~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
+ | ||+++++++++.+.........+.+.+|+.+++++++|+.+++++
T Consensus 276 ~-G~~ig~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~aal~~~~~~~ 325 (433)
T 1zod_A 276 A-GLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDG 325 (433)
T ss_dssp T-TSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTT
T ss_pred C-CCCeeEEEEhHHHHHhhccCCCCCCCCCCcCHHHHHHHHHHHHHHHhCC
Confidence 5 6 999999999998876321111345578899999999999887653
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2e-16 Score=175.72 Aligned_cols=117 Identities=16% Similarity=0.177 Sum_probs=95.8
Q ss_pred ceEEEEEcCc-cCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEGI-FSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~v-~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
+.++||+|+| +++.|.+.+ |++|+++|++||++||+||+|+ | +|++|+.+ ++++|+.| ||+ ||||++
T Consensus 594 ~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~t-G-fGRtG~~fa~e~~gv~P---Dii--tlsK~L 666 (831)
T 4a0g_A 594 HVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFT-G-FWRLGVETTTELLGCKP---DIA--CFAKLL 666 (831)
T ss_dssp EEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTT-T-TTTTSBSSTHHHHSSCC---SEE--EECGGG
T ss_pred cEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCcc-c-cccCCCchhhHhcCCCC---cEE--EEeccc
Confidence 4679999998 788888775 9999999999999999999984 5 67888755 48889876 676 999999
Q ss_pred cc---ccceeecCHHHHHHHHhcCC----cccccCCCcHHHHHHHHHHHHHHHccCC
Q psy2206 370 GS---MGGYVAGSKSTIDYIRANSH----VRSYATSMPPPVAMQILTSMRIIMGLEN 419 (430)
Q Consensus 370 G~---~GG~v~gs~~li~~l~~~~~----~~~~s~s~~P~~~aaalaaL~~l~~~~~ 419 (430)
|. +-|++++++++++.+....+ .+.+|.+.+|+.|++++++|+++++++-
T Consensus 667 ~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~l 723 (831)
T 4a0g_A 667 TGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPET 723 (831)
T ss_dssp GTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTTT
T ss_pred ccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhHH
Confidence 64 33789999999998865321 2456778899999999999999987653
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-16 Score=160.52 Aligned_cols=113 Identities=12% Similarity=0.036 Sum_probs=83.8
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+.| +++|+++|++||++||+||+|+.++++..+.+....++....+.+|+++||||++|++|
T Consensus 180 ~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G 259 (407)
T 3nra_A 180 ARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSG 259 (407)
T ss_dssp CCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGG
T ss_pred CcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCe
Confidence 456777888999999999 99999999999999999999998777643333333332011356799999999999887
Q ss_pred ---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 374 ---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
||+++++++++.++.....+ +.+.+++.++++.++|
T Consensus 260 ~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l 298 (407)
T 3nra_A 260 YRLGVAFGSRAIIARMEKLQAIV--SLRAAGYSQAVLRGWF 298 (407)
T ss_dssp GCCEEEEECHHHHHHHHHHHHHH--TSSSCHHHHGGGGGTT
T ss_pred eeEEEEEcCHHHHHHHHHHHhhh--ccCCChHHHHHHHHHH
Confidence 99999999999988755433 3344555555554444
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.1e-16 Score=161.00 Aligned_cols=111 Identities=21% Similarity=0.308 Sum_probs=84.9
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCC-ccceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR-GVTEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr-G~~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++|++|++++++|.+.| |++|+++|++||++||+||+|+ |+ ..|. +..+.+++.+ ||+ ||||+++
T Consensus 201 ~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~--~~g~~~~~~~~~~~~---di~--s~sK~l~ 272 (453)
T 2cy8_A 201 DIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVIS-GF--RVGNHGMQALLDVQP---DLT--CLAKASA 272 (453)
T ss_dssp GEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TT--TTCTTHHHHHHTCCC---SEE--EEEGGGG
T ss_pred CEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-cc--ccCchhhhHHhCCCC---cEE--EEChhhh
Confidence 4679999999999999888 9999999999999999999997 65 3343 3345677654 665 9999997
Q ss_pred c--ccceeecCHHHHHHHHhc--CCc-ccccCCCcHHHHHHHHHHHHH-H
Q psy2206 371 S--MGGYVAGSKSTIDYIRAN--SHV-RSYATSMPPPVAMQILTSMRI-I 414 (430)
Q Consensus 371 ~--~GG~v~gs~~li~~l~~~--~~~-~~~s~s~~P~~~aaalaaL~~-l 414 (430)
. .+||+++++++++.+... ... ...+.+.+|+.+++++++|+. +
T Consensus 273 ~G~~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~aa~~aal~~~~ 322 (453)
T 2cy8_A 273 GGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTIL 322 (453)
T ss_dssp TTSSCEEEEECHHHHTTSSSCC---------CCCCHHHHHHHHHHHHHHH
T ss_pred CCcceEEEechHHHHHHhccccCCCceeCCCCCCCHHHHHHHHHHHHHHh
Confidence 4 569999999998876541 111 122446789999999999998 6
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3e-16 Score=160.03 Aligned_cols=192 Identities=19% Similarity=0.136 Sum_probs=130.4
Q ss_pred cCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCC---CccCCCCCcHHHHHHHHHHHHHhCCCCCC-C-CC-
Q psy2206 199 FNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASY---NYLGFGENTGLCTERSKESVKQSGCALCS-P-SA- 272 (430)
Q Consensus 199 ~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~---nYLGl~~~~~~v~~a~~~ai~~yG~g~~~-s-r~- 272 (430)
++..+.++.|++++..+ | +++|||+++ ++||+. + |.+++++.+++++++..+.. . ..
T Consensus 39 ~~~~~~~~~g~~~~d~~-------------g--~~~lD~~~~~~~~~lG~~-~-p~v~~ai~~~~~~~~~~~~~~~~~~~ 101 (420)
T 2pb2_A 39 ADFIPVKGKGSRVWDQQ-------------G--KEYIDFAGGIAVTALGHC-H-PALVEALKSQGETLWHTSNVFTNEPA 101 (420)
T ss_dssp CCSCEEEEEBTEEEETT-------------C--CEEEESSHHHHTCTTCBT-C-HHHHHHHHHHHTTCCCCCTTSCCHHH
T ss_pred CCceEEeeecCEEEECC-------------C--CEEEEccccccccccCCC-C-HHHHHHHHHHHHhcccccCccCCHHH
Confidence 34567888999998654 6 889999988 899994 4 57899999999876542211 1 11
Q ss_pred ----------------------HHHHHHHHHHHhh-------cC-------CCCCC------------------------
Q psy2206 273 ----------------------PSSLEAGLQKALL-------EG-------QPHSG------------------------ 292 (430)
Q Consensus 273 ----------------------~~~Le~~L~~~~~-------~~-------~p~~~------------------------ 292 (430)
.+.++.+++.... .+ .|..|
T Consensus 102 ~~l~~~la~~~g~~~v~~~~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~ 181 (420)
T 2pb2_A 102 LRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPA 181 (420)
T ss_dssp HHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCS
T ss_pred HHHHHHHHhhCCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCC
Confidence 1333333321100 00 00000
Q ss_pred ----------------CCCceEEEEEcCccCCCCcc----cCHHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eec
Q psy2206 293 ----------------KPWRKILIVVEGIFSMDGSI----VRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYF 351 (430)
Q Consensus 293 ----------------~~~~~~lIi~E~v~sm~G~i----~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~ 351 (430)
-..++++|++|+++++.|.+ .++++|+++|++||++||+||+| .| +|.+|..+. +.+
T Consensus 182 ~~~~~~~~d~~~le~~i~~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~-~g-~~~~g~~~~~~~~ 259 (420)
T 2pb2_A 182 DIIHVPFNDLHAVKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQ-CG-MGRTGDLFAYMHY 259 (420)
T ss_dssp CEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTT-TT-TTTTSSSSHHHHH
T ss_pred CeEEecCCCHHHHHHHhccCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCC-cC-cccCCcHHHHHhc
Confidence 00246789999999887762 45999999999999999999999 46 677776653 566
Q ss_pred CCCCCCccEEEeCccchhcc--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 352 GIDPREVDILMGTYTKSFGS--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
++.+ |++ ||||++|. ..|++++++++++.++..... .+.+.+|+.+++++++|+.+.+
T Consensus 260 ~~~~---dii--t~sK~l~~G~~iG~~~~~~~l~~~l~~~~~~--~t~~~~~~~~aa~~a~L~~~~~ 319 (420)
T 2pb2_A 260 GVTP---DIL--TSAKALGGGFPVSAMLTTQEIASAFHVGSHG--STYGGNPLACAVAGAAFDIINT 319 (420)
T ss_dssp TCCC---SEE--EECGGGGTTSCCEEEEECHHHHTTCC----C--CEECCCHHHHHHHHHHHHHHSS
T ss_pred CCCC---CeE--EecccccCCCceEEEEEhHHHHHhhcCCCcC--cccCcCHHHHHHHHHHHHHHHh
Confidence 7653 676 89999983 238888899888766542222 2345789999999999998865
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.64 E-value=7.9e-16 Score=154.01 Aligned_cols=113 Identities=19% Similarity=0.294 Sum_probs=89.6
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++|+++++++++|.+.| +++|+++|++||++||+||+|+ + +|.+|..+. +.+++.+ |++ ||||+++
T Consensus 182 ~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~-~~~~g~~~~~~~~~~~~---d~~--~~SK~l~ 254 (392)
T 3ruy_A 182 NTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQT-G-LGRTGKVFACDWDNVTP---DMY--ILGKALG 254 (392)
T ss_dssp TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTT-T-TTTTSSSSGGGGGTCCC---SEE--EECGGGG
T ss_pred CeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechh-C-CCccccchhhhccCCCC---CEE--EEchhhh
Confidence 5789999999999999998 9999999999999999999995 3 555565543 4556543 665 8999986
Q ss_pred c---ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 371 S---MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 371 ~---~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
. .+||+++++++++.+...... .+.+.+|+.++++.++|+.+..+
T Consensus 255 gG~~~~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~~ 302 (392)
T 3ruy_A 255 GGVFPISCAAANRDILGVFEPGSHG--STFGGNPLACAVSIAALEVLEEE 302 (392)
T ss_dssp TTTSCCEEEEECHHHHTTCCTTSSC--CSSTTCHHHHHHHHHHHHHHHHT
T ss_pred CChhhhEEEEECHHHHhhhccCCcC--CCCCCCHHHHHHHHHHHHHHHhh
Confidence 4 468999999998877654433 34467888999999999988654
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.62 E-value=8.3e-16 Score=154.13 Aligned_cols=112 Identities=24% Similarity=0.320 Sum_probs=84.7
Q ss_pred ceEEEEEcCccCCCC----cccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDG----SIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G----~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++|++++++++.| ...++++|+++|++||++||+||+|+ | +|.+|..+. +.+++.+ |++ ||||+++
T Consensus 183 ~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~~~~~~~~~~---d~~--t~sK~~~ 255 (406)
T 4adb_A 183 STCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQT-G-VGRTGELYAYMHYGVTP---DLL--TTAKALG 255 (406)
T ss_dssp TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTT-T-TTTTSSSSHHHHHTCCC---SEE--EECGGGG
T ss_pred CeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CCccchhHHHHhcCCCC---CEE--Eechhhc
Confidence 577899997766666 33469999999999999999999997 4 566666543 5566543 666 8999998
Q ss_pred c--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 371 S--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 371 ~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
. .+||+++++++++.+....+. .+.+.+|+.++++.++|+.+..
T Consensus 256 ~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~~~ 301 (406)
T 4adb_A 256 GGFPVGALLATEECARVMTVGTHG--TTYGGNPLASAVAGKVLELINT 301 (406)
T ss_dssp TTSCCEEEEECHHHHHTCCTTSSC--CSSTTCHHHHHHHHHHHHHHSS
T ss_pred CCCCeEEEEEcHHHHhhhccCCcC--CCCCCCHHHHHHHHHHHHHHHh
Confidence 2 249999999999887654333 3445788888889999988754
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.7e-15 Score=150.27 Aligned_cols=113 Identities=21% Similarity=0.274 Sum_probs=86.9
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++|+++++++++|.+.| +++|+++|++||++||+||+|+ | ++..|... .+.+++. .|++ ||||+++
T Consensus 185 ~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~-~-~~~~g~~~~~~~~~~~---~d~~--s~sK~~~ 257 (395)
T 1vef_A 185 ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT-G-MGRTGKRFAFEHFGIV---PDIL--TLAKALG 257 (395)
T ss_dssp TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSTHHHHTCC---CSEE--EECGGGG
T ss_pred CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEeccc-C-CccCCchhHhhhcCCC---CCEE--EEccccc
Confidence 4678999999999999988 9999999999999999999998 5 56555543 2445543 3666 9999998
Q ss_pred c--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 371 S--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 371 ~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
+ ..|++++++++++.++... +..+.+++++.++++.++|+.+.++
T Consensus 258 ~g~~~G~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~a~~~al~~~~~~ 304 (395)
T 1vef_A 258 GGVPLGVAVMREEVARSMPKGG--HGTTFGGNPLAMAAGVAAIRYLERT 304 (395)
T ss_dssp TTSSCEEEEEEHHHHHTSCTTS--SCCSSTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEehHHHHhhhccCC--cCCCcCCCHHHHHHHHHHHHHHHhC
Confidence 6 2388888888887765421 2345567888888888999887653
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.5e-15 Score=149.28 Aligned_cols=112 Identities=22% Similarity=0.295 Sum_probs=88.0
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++|+++++++++|.+.+ +++|+++|++||++||+||+|+ + ++.+|.... +.+++. +|++ ||||++|
T Consensus 199 ~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~~~~~~~~~---~di~--s~sK~~~ 271 (426)
T 1sff_A 199 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQS-G-AGRTGTLFAMEQMGVA---PDLT--TFAKSIA 271 (426)
T ss_dssp GEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSGGGGTTSC---CSEE--EECGGGG
T ss_pred ceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-c-cCcccchhhhhhcCCC---CCEE--EEccccc
Confidence 4578999999888998888 9999999999999999999998 5 566665432 445543 4665 9999999
Q ss_pred ccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 371 SMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 371 ~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
+ | ||+++++++++.+... ....+.+.+|+.++++.++|+.+.++
T Consensus 272 ~-GlriG~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~aal~~~~~~ 318 (426)
T 1sff_A 272 G-GFPLAGVTGRAEVMDAVAPG--GLGGTYAGNPIACVAALEVLKVFEQE 318 (426)
T ss_dssp T-SSCCEEEEEEHHHHTTSCTT--SBCCSSSSCHHHHHHHHHHHHHHHHT
T ss_pred C-CCceEEEEEcHHHHhhhccC--CcCcCCCCCHHHHHHHHHHHHHHHhc
Confidence 7 8 9999999988876532 22345567888888899999988654
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.5e-15 Score=154.40 Aligned_cols=117 Identities=23% Similarity=0.320 Sum_probs=86.8
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCc-cceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRG-VTEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG-~~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++||+|++++++|.+.| |++|+++|++||++||+||+|+ | +|.+|.+ .++++++. ..+||+ ||||++
T Consensus 258 ~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g-~g~~g~~~~~~~~gv~-~~~Di~--t~sK~~- 331 (472)
T 1ohv_A 258 TVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQT-G-GGSTGKFWAHEHWGLD-DPADVM--TFSKKM- 331 (472)
T ss_dssp CEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTT-T-TTTTSSSSGGGGGCCS-SCCSEE--EECGGG-
T ss_pred CEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCccc-C-CCCCCCchhccccCCC-CCCCEE--EEcccc-
Confidence 5689999999999999888 9999999999999999999996 5 6777764 34667764 124776 999995
Q ss_pred cccceeecCHHHHHHHHhcCCcccc-cCCCcHHHHHHHHHHHHHHHccCCchHH
Q psy2206 371 SMGGYVAGSKSTIDYIRANSHVRSY-ATSMPPPVAMQILTSMRIIMGLENGDEG 423 (430)
Q Consensus 371 ~~GG~v~gs~~li~~l~~~~~~~~~-s~s~~P~~~aaalaaL~~l~~~~~~~~~ 423 (430)
+.|||++ ++++.. ......+ +.+.+|+.+++++++|+++.+++-.++.
T Consensus 332 l~GG~~~-~~~~~~----~~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~ 380 (472)
T 1ohv_A 332 MTGGFFH-KEEFRP----NAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNA 380 (472)
T ss_dssp SSEEEEE-CGGGSC----SSSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred ccCCccC-chhhcc----cccccccCccCccHHHHHHHHHHHHHHHhCCHHHHH
Confidence 3378887 666531 1112222 3367899999999999998765433333
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-14 Score=144.98 Aligned_cols=109 Identities=26% Similarity=0.317 Sum_probs=82.1
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCc-cceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRG-VTEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG-~~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++|++|++++++|.+.+ |++|+++|++||++||+||+|+ + +|.+|.. ..+++++.+ |++ ||||+||
T Consensus 212 ~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~-~-~g~~g~~~~~~~~~~~~---d~~--t~sK~~~ 284 (419)
T 2eo5_A 212 EVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQM-G-LGRTGKLFAIENFNTVP---DVI--TLAKALG 284 (419)
T ss_dssp GEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSGGGGGTCCC---SEE--EECGGGG
T ss_pred CEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-C-CccCcchhhHHhcCCCC---CEE--Eeccccc
Confidence 4579999999999998777 9999999999999999999996 3 3455543 345566543 665 8999998
Q ss_pred ccc----ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 371 SMG----GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 371 ~~G----G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
+ | ||++++++++ .+ ... +..+.+.+|+.++++.++|+.+++
T Consensus 285 ~-G~~riG~~~~~~~~~-~~-~~~--~~~t~~~n~~~~~aa~aal~~~~~ 329 (419)
T 2eo5_A 285 G-GIMPIGATIFRKDLD-FK-PGM--HSNTFGGNALACAIGSKVIDIVKD 329 (419)
T ss_dssp T-TTSCCEEEEEEGGGC-CC---------CCCCCHHHHHHHHHHHHHHHH
T ss_pred C-CccceEEEEEchHhh-cC-Ccc--cCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5 6 8999999887 65 212 223556788888899999987653
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1e-14 Score=146.38 Aligned_cols=111 Identities=23% Similarity=0.282 Sum_probs=82.6
Q ss_pred ceEEEEEcCccCCCCc-c---cCHHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGS-I---VRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~-i---~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++|+++++.+++|. + .++++|+++|++||++||+||+|+ | ++..|+.+. +.++.. .|++ ||||+++
T Consensus 183 ~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~-~~~~g~~~~~~~~~~~---~d~~--s~sK~~~ 255 (397)
T 2ord_A 183 DVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQC-G-MGRTGKLFAYQKYGVV---PDVL--TTAKGLG 255 (397)
T ss_dssp TEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSHHHHHTCC---CSEE--EECGGGG
T ss_pred CeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEeccc-C-CccCccchhhhhhCCC---CCee--eeccccC
Confidence 4678999999999998 3 569999999999999999999996 5 565565442 455543 3665 9999998
Q ss_pred c--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 371 S--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 371 ~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
. ..|+++++++++ .++... ...+.+.+|+.++++.++|+.+.+
T Consensus 256 ~G~r~G~~~~~~~~~-~l~~~~--~~~~~~~~~~~~~a~~~~l~~~~~ 300 (397)
T 2ord_A 256 GGVPIGAVIVNERAN-VLEPGD--HGTTFGGNPLACRAGVTVIKELTK 300 (397)
T ss_dssp TTSCCEEEEECSTTC-CCCTTS--SCCSSTTCHHHHHHHHHHHHHHTS
T ss_pred CCcCeEEEEEchHhc-ccCCCC--cCCCCCCCHHHHHHHHHHHHHHHh
Confidence 3 138888888776 543211 223445788888889999998765
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-13 Score=137.35 Aligned_cols=115 Identities=17% Similarity=0.199 Sum_probs=85.0
Q ss_pred ceEEEEEcCccCCCCcc---cCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCC--CCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSI---VRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDP--REVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i---~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~--~~~dIv~~TlSKa~G 370 (430)
++++|+++++.+++|.+ .+|++|+++|++||++||+||+|+...+ +|........+.+ .+++|++.|+||++|
T Consensus 194 ~~~~vil~~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~--~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g 271 (421)
T 3l8a_A 194 NVKIYLLCSPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLAL--FGNTHHSLNTLDASYKDFTIILSSATKTFN 271 (421)
T ss_dssp TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBC--TTCCCCCGGGSCTTGGGTEEEEECSHHHHT
T ss_pred CCeEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcccccccc--CCCCCccHHHcCchhcCcEEEEEeChhhcc
Confidence 46788899999999988 5699999999999999999999976443 3432222222221 255788999999998
Q ss_pred ccc---ceeecC-HHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 371 SMG---GYVAGS-KSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 371 ~~G---G~v~gs-~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
+.| |+++++ +++++.+......+. +.+.+|+.++++.++++.
T Consensus 272 ~~G~~~G~~~~~~~~l~~~~~~~~~~~~-~~~~n~~~~~a~~aal~~ 317 (421)
T 3l8a_A 272 IAGTKNSFAIIQNESLRRKFQYRQLANN-QHEVPTVGMIATQAAFQY 317 (421)
T ss_dssp CGGGCCEEEECCSHHHHHHHHHHHHHTT-CSCCCHHHHHHHHHHHHH
T ss_pred CchhheEeEEcCCHHHHHHHHHHHHhcc-cCCCCHHHHHHHHHHHhc
Confidence 777 999888 899988876432222 335677777778888764
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-13 Score=135.37 Aligned_cols=117 Identities=11% Similarity=-0.017 Sum_probs=82.2
Q ss_pred ceEEEEEcCccCCCCcc---cCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSI---VRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i---~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
++++|+++.+.+++|.+ .++++|+++|++||++||+||+|+.+.++.........++....+.+|++.||||++|++
T Consensus 160 ~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~ 239 (391)
T 3dzz_A 160 SVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLA 239 (391)
T ss_dssp TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCT
T ss_pred CceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhcccc
Confidence 46778889999999999 679999999999999999999998765532212222222211123359999999999887
Q ss_pred c---ceeecC-HHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 373 G---GYVAGS-KSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 373 G---G~v~gs-~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
| ||++++ +++++.++....... ..+.+++.++++.++++.
T Consensus 240 G~r~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~ 283 (391)
T 3dzz_A 240 ALHAACAIIPNPDLRARAEESFFLAG-IGEPNLLAIPAAIAAYEE 283 (391)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHHHT-CSSCCTTHHHHHHHHHHH
T ss_pred chhheEEEECCHHHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHhc
Confidence 7 999987 999988876432222 223555556666666654
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.3e-13 Score=134.94 Aligned_cols=113 Identities=18% Similarity=0.198 Sum_probs=84.5
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc--
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-- 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-- 373 (430)
++++|+++.+.+++|.+.|++ |+++|++||++||+||+|+.+.++.....+....+. .+.||+++||||++|++|
T Consensus 154 ~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~r 230 (370)
T 2z61_A 154 KTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDEN--LEKTILINGFSKLYAMTGWR 230 (370)
T ss_dssp SEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTT--CSSEEEEEESTTTTTCGGGC
T ss_pred CceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCC--CCcEEEEecChhccCCccce
Confidence 456778889999999999999 999999999999999999876654211122221111 356899999999998777
Q ss_pred -ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 374 -GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 374 -G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
||+++++++++.++..... ++.+.+++.++++.++|+.
T Consensus 231 ~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~ 269 (370)
T 2z61_A 231 IGYVISNDEIIEAILKLQQN--LFISAPTISQYAALKAFEK 269 (370)
T ss_dssp CEEEECCHHHHHHHHHHHHH--HTSSSCHHHHHHHGGGGSH
T ss_pred EEEEEECHHHHHHHHHHHhh--cccCCCHHHHHHHHHHHhc
Confidence 9999999999988764332 2334667766667777754
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-14 Score=142.25 Aligned_cols=114 Identities=16% Similarity=0.037 Sum_probs=77.1
Q ss_pred eEEEEEcCccCCC-CcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchh-cc
Q psy2206 297 KILIVVEGIFSMD-GSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSF-GS 371 (430)
Q Consensus 297 ~~lIi~E~v~sm~-G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~-G~ 371 (430)
+++|+++++.+++ |.+.+ |++|+++|++||++||+||+|..++.+..|....... ...|+++.|+||+| |.
T Consensus 136 ~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~----~~~d~~~~s~sK~~~~~ 211 (357)
T 3lws_A 136 IACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA----GLFDSIYISFYKGLGGI 211 (357)
T ss_dssp CSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH----TTSSEEEEESSSTTCCS
T ss_pred cceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH----hcCCEEEEeccccCCCC
Confidence 5688999999886 88876 9999999999999999999997333222222222221 13478899999999 67
Q ss_pred ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.||++++++++++.++.....+..+...+...+++++++|+..
T Consensus 212 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 254 (357)
T 3lws_A 212 AGAILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELR 254 (357)
T ss_dssp SCEEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHH
T ss_pred ceEEEEcCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHH
Confidence 7899999999998887532111111222233344455666653
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-13 Score=135.01 Aligned_cols=113 Identities=19% Similarity=0.194 Sum_probs=80.4
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCC-CccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTG-RGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~G-rG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
+++|++..+.+++|.+.| +++|+++|++||++||+||+|+...++ | ........+...+.+|+++||||++|++
T Consensus 151 ~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 228 (377)
T 3fdb_A 151 ARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFD--GQHTVAAGVSDTAASVCITITAPSKAWNIA 228 (377)
T ss_dssp CCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSS--SCCCCGGGSCHHHHHHEEEEECSTTTTTCG
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcC--CCCCcccHHHccCCCcEEEEEeChHhccCc
Confidence 456777778999999986 777888899999999999999875553 2 2111111211124568999999999877
Q ss_pred c---ceee-cCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 373 G---GYVA-GSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 373 G---G~v~-gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
| ||++ +++++++.++..... .+.+.+++.++++.++|+.
T Consensus 229 G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~ 271 (377)
T 3fdb_A 229 GLKCAQIIFSNPSDAEHWQQLSPV--IKDGASTLGLIAAEAAYRY 271 (377)
T ss_dssp GGCCEEEECCSHHHHHHHHHSCHH--HHCCCCHHHHHHHHHHHHH
T ss_pred chhheEEEeCCHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHhc
Confidence 7 8765 489999998874322 3445677777777777764
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-13 Score=137.47 Aligned_cols=113 Identities=16% Similarity=0.180 Sum_probs=82.2
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
++++|+++.+.+++|.+.+ |++|+++|++||++||+||+|+.++++..+.++....+. .+.+|+++||||+||++
T Consensus 198 ~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~g~~ 275 (432)
T 3ei9_A 198 RTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGA--EEVAMETASFSNYAGFT 275 (432)
T ss_dssp CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTG--GGTEEEEEESHHHHCTT
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCC--CCeEEEEecchhccCCc
Confidence 3456777799999999876 778888899999999999999987777555555443332 25679999999999999
Q ss_pred c---ceeecCHHH--------HHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 373 G---GYVAGSKST--------IDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 373 G---G~v~gs~~l--------i~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
| ||+++++++ ++.+.... ...++ +.+++..+++.++++
T Consensus 276 G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~a~~~~l~ 324 (432)
T 3ei9_A 276 GVRLGWTVIPKKLLYSDGFPVAKDFNRII-CTCFN-GASNISQAGALACLT 324 (432)
T ss_dssp TTCCEEEECCTTCBCTTSCBHHHHHHHHH-HHSCC-CSCHHHHHHHHHHSS
T ss_pred ccceEEEEEChHHhhcchHHHHHHHHHHh-ccccC-CCCHHHHHHHHHHHh
Confidence 9 999999887 66665432 12222 345555555666653
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-13 Score=138.14 Aligned_cols=130 Identities=20% Similarity=0.249 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCc-c
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRG-V 347 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG-~ 347 (430)
+++||++|++. .+.++++|++|++++++|.+.| +++|+++|++||++||+||+|+ + +|.+|.. .
T Consensus 205 ~~~le~~l~~~---------~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~-~-~g~~g~~~~ 273 (449)
T 3a8u_X 205 ADELLKLIELH---------DASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVIT-G-FGRTGSMFG 273 (449)
T ss_dssp HHHHHHHHHHH---------CGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSH
T ss_pred HHHHHHHHHhc---------CCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEecccc-C-ccccCcchh
Confidence 56788888652 0125789999999999999888 9999999999999999999995 2 4555543 3
Q ss_pred ceecCCCCCCccEEEeCccchhcc---ccceeecCHHHHHHHHhcCC-------cccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 348 TEYFGIDPREVDILMGTYTKSFGS---MGGYVAGSKSTIDYIRANSH-------VRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 348 ~e~~g~~~~~~dIv~~TlSKa~G~---~GG~v~gs~~li~~l~~~~~-------~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
.+.+++.+ ||+ ||||+++. +.|++++++++++.+..... .+.++.+.+|+.+++++++|+.++++
T Consensus 274 ~~~~~~~~---di~--s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~ 348 (449)
T 3a8u_X 274 ADSFGVTP---DLM--CIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKE 348 (449)
T ss_dssp HHHHTCCC---SEE--EECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHT
T ss_pred hhhcCCCC---CEE--EEcccccCCCCceEEEEECHHHHHHhhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhc
Confidence 46667654 666 99999975 34788889999999886421 12345567899999999999988764
Q ss_pred C
Q psy2206 418 E 418 (430)
Q Consensus 418 ~ 418 (430)
+
T Consensus 349 ~ 349 (449)
T 3a8u_X 349 N 349 (449)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=8.8e-13 Score=133.93 Aligned_cols=128 Identities=18% Similarity=0.181 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCc-cCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCc-
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGI-FSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRG- 346 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v-~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG- 346 (430)
+++|+++|++. +.++++|++|++ ++++|.+.| |++|+++|++||++||+||+|+ + +|..|..
T Consensus 191 ~~~l~~~l~~~----------~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~-~-~g~~g~~~ 258 (429)
T 1s0a_A 191 MVGFARLMAAH----------RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT-G-FGRTGKLF 258 (429)
T ss_dssp GHHHHHHHHHH----------TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSS
T ss_pred HHHHHHHHHhC----------CCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhh-C-CcccchHH
Confidence 57888888752 125778999999 899998888 9999999999999999999996 3 4555543
Q ss_pred cceecCCCCCCccEEEeCccchhcc---ccceeecCHHHHHHHHhcC-Cc--ccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 347 VTEYFGIDPREVDILMGTYTKSFGS---MGGYVAGSKSTIDYIRANS-HV--RSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 347 ~~e~~g~~~~~~dIv~~TlSKa~G~---~GG~v~gs~~li~~l~~~~-~~--~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
..+.+++.+ |++ ||||+++. ..||+++++++++.+.... .. ...+.+.+|+.++++.++|+.+.++
T Consensus 259 ~~~~~~~~~---d~~--t~sK~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~ 330 (429)
T 1s0a_A 259 ACEHAEIAP---DIL--CLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESG 330 (429)
T ss_dssp GGGGGTCCC---SEE--EECGGGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTC
T ss_pred HhhhcCCCC---CEE--EecccccCCCccceEEEeCHHHHHHhhcCCCcccccCCCCCCCHHHHHHHHHHHHHHHhC
Confidence 235556543 666 89999974 2389999999999887631 11 1234557888889999999988764
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-13 Score=139.93 Aligned_cols=127 Identities=17% Similarity=0.161 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV- 347 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~- 347 (430)
+++||++|++. ..++++|++|++++++|.+.+ |++|+++|++||++||+||+|+ | +|.+|...
T Consensus 218 ~~~le~~i~~~----------~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g-~g~~g~~~~ 285 (449)
T 2cjg_A 218 LRQARAAFETR----------PHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQT-G-CGLTGTAWA 285 (449)
T ss_dssp HHHHHHHHHHS----------TTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTT-T-TTTTSSSST
T ss_pred HHHHHHHHHhc----------CCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEecccc-C-CCccCccee
Confidence 45578777642 125789999999999998888 9999999999999999999997 4 56666643
Q ss_pred ceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHh--cC-CcccccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 348 TEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRA--NS-HVRSYATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 348 ~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~--~~-~~~~~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
.+++++.+ |++ ||||++ +-|++++++++++.+.. .. ..+..+.+.+|+.+++++++|+.+++++
T Consensus 286 ~~~~~~~~---di~--t~sK~l--~iG~~~~~~~~~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~~~~~ 352 (449)
T 2cjg_A 286 YQQLDVAP---DIV--AFGKKT--QVCGVMAGRRVDEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEG 352 (449)
T ss_dssp HHHHTCCC---SEE--EECGGG--SSEEEEECGGGGGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHHHHT
T ss_pred ecccCCCc---eEE--EecCcc--cEEEEEECHHHhhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHHHhcc
Confidence 36667654 665 899999 56777788898886332 11 1122355678999999999999886643
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=6.9e-13 Score=132.17 Aligned_cols=113 Identities=12% Similarity=0.153 Sum_probs=82.5
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCC--CCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDP--REVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~--~~~dIv~~TlSKa~G 370 (430)
++++|+++++.+++|.+.| +++|+++|++||++||+||+|+.+.++. ........+.+ .+.|+++.|+||++|
T Consensus 163 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~sK~~~ 240 (388)
T 1j32_A 163 KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDD--AQHLSIGAASPEAYERSVVCSGFAKTYA 240 (388)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTT--CCCCCGGGSCHHHHHTEEEEEESTTTTT
T ss_pred CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCC--CCCCCHHHccccccCCEEEEeechhccC
Confidence 4667888889999999865 9999999999999999999998766542 21111112211 246899999999998
Q ss_pred ccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 371 SMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 371 ~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
++| ||+++++++++.++...... +...+++.++++.++|+
T Consensus 241 ~~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~ 283 (388)
T 1j32_A 241 MTGWRVGFLAGPVPLVKAATKIQGHS--TSNVCTFAQYGAIAAYE 283 (388)
T ss_dssp CTTTCCEEEECCHHHHHHHHHHHHTT--TCSCCHHHHHHHHHHHH
T ss_pred CcccceEEEEeCHHHHHHHHHHHhhc--ccCCCHHHHHHHHHHHh
Confidence 777 99999999998887643222 33456666666666665
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-12 Score=130.28 Aligned_cols=112 Identities=14% Similarity=0.187 Sum_probs=81.0
Q ss_pred eEEE-EEcCccCCCCcccCHH---HHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILI-VVEGIFSMDGSIVRLP---EIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lI-i~E~v~sm~G~i~~L~---~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
+++| +++.+.+++|.+.|++ +|+++|++||++||+||+|+.+.++.........++ +.+.+|+++||||++| +
T Consensus 175 ~~~v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~--~~~~~i~~~s~sK~~~-~ 251 (407)
T 2zc0_A 175 VKLIYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALD--NEGRVIVAGTLSKVLG-T 251 (407)
T ss_dssp EEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGC--SSCCEEEEEESTTTTC-T
T ss_pred ceEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcC--CCCCEEEEcccccccC-C
Confidence 4454 6889999999999876 999999999999999999987665322111122222 2235789999999998 5
Q ss_pred c---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 373 G---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
| ||+++++++++.++.....+.+ +.+++.++++.++|+.
T Consensus 252 G~r~G~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~ 293 (407)
T 2zc0_A 252 GFRIGWIIAEGEILKKVLMQKQPIDF--CAPAISQYIALEYLKR 293 (407)
T ss_dssp TSCCEEEECCHHHHHHHHHHHTTTTS--SSCHHHHHHHHHHHHT
T ss_pred CcceEEEecCHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHc
Confidence 5 9999999999988865443322 3466666666666654
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=5.2e-13 Score=133.91 Aligned_cols=113 Identities=15% Similarity=0.203 Sum_probs=82.6
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
++++|+++.+.+++|.+.| +++|+++|++||++||+||+|+.+.++.....+....+. .+.||+++||||++|++
T Consensus 174 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~--~~~~i~~~s~sK~~~~~ 251 (389)
T 1o4s_A 174 KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEG--FDRIVYINGFSKSHSMT 251 (389)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSS--STTEEEEEESTTTTTCG
T ss_pred CceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCC--CCcEEEEeechhhcCCc
Confidence 4567888899999999977 999999999999999999999876654211222222111 25689999999999877
Q ss_pred c---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 373 G---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
| ||+++++++++.+....... +.+.+++.++++.++|+
T Consensus 252 G~r~G~l~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~ 292 (389)
T 1o4s_A 252 GWRVGYLISSEKVATAVSKIQSHT--TSCINTVAQYAALKALE 292 (389)
T ss_dssp GGCCEEEECCHHHHHHHHHHHHHH--TCSCCHHHHHHHHHHTT
T ss_pred ccceEEEEeCHHHHHHHHHHhhhc--ccCCCHHHHHHHHHHHh
Confidence 7 99999999998887643222 23346666655555553
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.41 E-value=9.5e-13 Score=129.50 Aligned_cols=109 Identities=15% Similarity=0.175 Sum_probs=82.1
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|+++.+.+++|.+.| +++|+++|++||++||+||+|+.+.++ .+.+.....+. .+.+|+++||||++|++|
T Consensus 145 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G 221 (361)
T 3ftb_A 145 VDSVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD-PSSSFVGEIKN--YSCLFIIRAMTKFFAMPG 221 (361)
T ss_dssp CSEEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCC-TTSSSGGGTTT--CSSEEEEEESSSTTSCGG
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCC-cccchhHhccc--CCCEEEEeeChhhcCCCC
Confidence 456778888999999987 777888888999999999999876665 33343333332 234688999999998777
Q ss_pred ---ceee-cCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 374 ---GYVA-GSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 374 ---G~v~-gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
||++ +++++++.++..... .+++++.++++.++|+
T Consensus 222 ~r~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~ 260 (361)
T 3ftb_A 222 IRFGYGITNNKEIAAKIKAKQNP----WNINCFAEMAAINCLK 260 (361)
T ss_dssp GCCEEEEESCHHHHHHHHTTSCT----TCSCHHHHHHHHHTSS
T ss_pred cceeEEEeCCHHHHHHHHhhCCC----CCCCHHHHHHHHHHhc
Confidence 9988 999999999875543 2467777777776664
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.9e-13 Score=132.73 Aligned_cols=125 Identities=15% Similarity=0.182 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC-CCccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT-GRGVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~-GrG~~ 348 (430)
+++|++++++ ++++|+++.+.+++|.+.| +++|+++|++||++||+||+|+.+.++.. ...+.
T Consensus 150 ~~~l~~~l~~-------------~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 216 (389)
T 1gd9_A 150 VDELKKYVTD-------------KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIA 216 (389)
T ss_dssp HHHHHHHCCT-------------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGG
T ss_pred HHHHHHhcCc-------------CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHh
Confidence 5667666532 3556777899999999885 99999999999999999999987766422 22333
Q ss_pred eecCCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 349 EYFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 349 e~~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
...+. .+.||+++||||++|++| ||+++++++++.++...... +.+.+++.++++.++|+..
T Consensus 217 ~~~~~--~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~~ 281 (389)
T 1gd9_A 217 SLDGM--FERTITVNGFSKTFAMTGWRLGFVAAPSWIIERMVKFQMYN--ATCPVTFIQYAAAKALKDE 281 (389)
T ss_dssp GSTTC--GGGEEEEEESTTTTTCGGGCCEEEECCHHHHHHHHHHHTTT--TCSCCHHHHHHHHHHHTCH
T ss_pred hccCC--CCCEEEEecChhhcCCcccceEEEEECHHHHHHHHHHHhhh--ccCCCHHHHHHHHHHHhCC
Confidence 22221 356899999999999888 99999999999887644332 2345666666666777643
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.39 E-value=5.5e-12 Score=125.33 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=83.1
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCC-ccEEEeCccchhcccc--
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPRE-VDILMGTYTKSFGSMG-- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~-~dIv~~TlSKa~G~~G-- 373 (430)
+++|+++++.+++|.+.|++++.++++.++++||+||+|+.+.++ .......+. .+ .+|+++||||++|++|
T Consensus 165 ~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~---~~~~~~~~~--~~~~~i~~~s~sK~~~~~G~r 239 (369)
T 3cq5_A 165 PDIVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPS---PSATTLLEK--YPTKLVVSRTMSKAFDFAGGR 239 (369)
T ss_dssp CSEEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCS---CCGGGGTTT--CTTTEEEEEESSSTTSCGGGC
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCC---cchHHHHhh--CCCCEEEEEechHhcCCcccc
Confidence 456778999999999999999999999999999999999865432 111122111 12 5799999999999888
Q ss_pred -ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 374 -GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 374 -G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
||+++++++++.++..... + +.+++.++++.++|+.
T Consensus 240 ~G~~~~~~~~~~~l~~~~~~--~--~~~~~~~~a~~~~l~~ 276 (369)
T 3cq5_A 240 LGYFVANPAFIDAVMLVRLP--Y--HLSALSQAAAIVALRH 276 (369)
T ss_dssp CEEEEECTHHHHHHHTTSCT--T--CSCHHHHHHHHHHHHT
T ss_pred eEEEEeCHHHHHHHHHcCCC--C--CCCHHHHHHHHHHhcC
Confidence 9999999999998875543 2 3667777777777764
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=128.73 Aligned_cols=124 Identities=22% Similarity=0.363 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++++. + ++++|+++++.+++|.+.|+++|+++|++||++||+||+|+.|.+. ++
T Consensus 134 ~~~l~~~l~~~-----~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~---------~~ 193 (386)
T 2dr1_A 134 PEDLDDALRKN-----P------DVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGAD---------IK 193 (386)
T ss_dssp HHHHHHHHHHC-----T------TCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBC---------CC
T ss_pred HHHHHHHHhcC-----C------CCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCcc---------cc
Confidence 78888888651 1 3457777899999999999999999999999999999999876532 11
Q ss_pred CCCCCccEEEeCccchhccc-c-ceeecCHHHHHHHHh----------------cC-CcccccCCCcHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGSM-G-GYVAGSKSTIDYIRA----------------NS-HVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~-G-G~v~gs~~li~~l~~----------------~~-~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
+...++||++.|+||+++.+ | |++++++++++.++. .. .. ..+.+.++..++++.++|+.
T Consensus 194 ~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~ 272 (386)
T 2dr1_A 194 FDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKE-STPSTPPMPQVFGINVALRI 272 (386)
T ss_dssp TTTTTCSEEEEETTSTTCCCSSCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHS-SCSSCCCHHHHHHHHHHHHH
T ss_pred ccccCCcEEEEeccccccCCCceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCC-CCCCCCCHHHHHHHHHHHHH
Confidence 22124699999999999876 4 899999999887631 10 01 12335677777778888888
Q ss_pred HHcc
Q psy2206 414 IMGL 417 (430)
Q Consensus 414 l~~~ 417 (430)
+.+.
T Consensus 273 ~~~~ 276 (386)
T 2dr1_A 273 IEKM 276 (386)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7544
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=5.9e-13 Score=132.43 Aligned_cols=95 Identities=17% Similarity=0.218 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++++ ++++|+++++.+++|.+.|+++|+++|++||++||+||+|+.|... ..+ ..
T Consensus 154 ~~~l~~~l~~-------------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~---~~~-~~-- 214 (406)
T 1kmj_A 154 LETLPTLFDE-------------KTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHP---VDV-QA-- 214 (406)
T ss_dssp GGGHHHHCCT-------------TEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSC---CCH-HH--
T ss_pred HHHHHHHhcc-------------CCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCC---Ccc-cc--
Confidence 5777776642 4678899999999999999999999999999999999999865321 111 11
Q ss_pred CCCCCccEEEeCccchhcccc-ceeecCHHHHHHHHhc
Q psy2206 353 IDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIRAN 389 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~~~ 389 (430)
.+.|+++.|+||.+|..| |++++++++++.++..
T Consensus 215 ---~~~d~~~~s~~K~~g~~G~G~~~~~~~~~~~~~~~ 249 (406)
T 1kmj_A 215 ---LDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPW 249 (406)
T ss_dssp ---HTCSEEEEEGGGTTSCTTCEEEEECHHHHHHCCCS
T ss_pred ---cCCCEEEEEchhccCCCCcEEEEEeHHHHhhcCCc
Confidence 135899999999999888 9999999999887643
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-12 Score=131.98 Aligned_cols=114 Identities=15% Similarity=0.218 Sum_probs=84.8
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCC-CCCccEEEeCccchhcc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGID-PREVDILMGTYTKSFGS 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~-~~~~dIv~~TlSKa~G~ 371 (430)
++++|+++++.+++|.+.| +++|+++|++||++||+||+|+...++ |.+......+. ..++|+++.||||++|+
T Consensus 182 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~s~sK~~~~ 259 (429)
T 1yiz_A 182 KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFE--PFEHIRICTLPGMWERTITIGSAGKTFSL 259 (429)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCT--TSCCCCGGGSTTTGGGEEEEEEHHHHHTC
T ss_pred CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccC--CCCCcChhhccCCcCceEEEecchhccCC
Confidence 3567777899999999986 999999999999999999999865553 22222111221 13578999999999998
Q ss_pred cc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 372 MG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 372 ~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
+| ||+++++++++.+....... +.+.+++.++++.++|+.
T Consensus 260 ~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~ 302 (429)
T 1yiz_A 260 TGWKIGWAYGPEALLKNLQMVHQNC--VYTCATPIQEAIAVGFET 302 (429)
T ss_dssp GGGCCEEEESCHHHHHHHHHHHHTT--TCCCCHHHHHHHHHHHHH
T ss_pred CCcceEEEEeCHHHHHHHHHHHhhc--ccCCChHHHHHHHHHHhc
Confidence 77 99999999999887643222 233566666677777776
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-12 Score=130.37 Aligned_cols=109 Identities=17% Similarity=0.211 Sum_probs=83.3
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCc-cceecCCCCCCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRG-VTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG-~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
+++|+++++.+++|.+.| +++|+++|++||++||+||+|+.+.++ +.. ..+. .+.+|+++||||++|++
T Consensus 155 ~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~--~~~~~~~~-----~~~~i~~~s~sK~~~~~ 227 (375)
T 3op7_A 155 TKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSEL--DVPSIIEV-----YDKGIAVNSLSKTYSLP 227 (375)
T ss_dssp CCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSS--CCCCHHHH-----CTTEEEEEESSSSSSCG
T ss_pred CeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccc--CCCchhhh-----cCCEEEEeEChhhcCCc
Confidence 457788899999999999 999999999999999999999865443 111 1222 13468899999999877
Q ss_pred c---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 373 G---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
| ||+++++++++.++..... ++.+.+++.++++.++++..
T Consensus 228 G~r~G~v~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~ 270 (375)
T 3op7_A 228 GIRIGWVAANHQVTDILRDYRDY--TMICAGVFDDLVAQLALAHY 270 (375)
T ss_dssp GGCCEEEECCHHHHHHHTTTGGG--TTSCCCHHHHHHHHHHHHTH
T ss_pred ccceEEEEeCHHHHHHHHHHHhh--hccCCCcHHHHHHHHHHhcc
Confidence 7 9999999999998865433 23445677777777777643
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.9e-12 Score=126.73 Aligned_cols=125 Identities=18% Similarity=0.272 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|+++|++. + +.++|++..+.+++|.+.|+++|+++|++||++||+||+|+.|... ++
T Consensus 119 ~~~l~~~l~~~-----~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~---------~~ 178 (366)
T 1m32_A 119 VQAIDAILNAD-----P------TISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIP---------MD 178 (366)
T ss_dssp HHHHHHHHHHC-----T------TCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSC---------CC
T ss_pred HHHHHHHHhcC-----C------CeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcC---------cc
Confidence 68888888762 0 2346777888899999999999999999999999999999865431 12
Q ss_pred CCCCCccEEEeCccchh-cccc-ceeecCHHHHHHHHhcCCcccc----------------cCCCcHHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSF-GSMG-GYVAGSKSTIDYIRANSHVRSY----------------ATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~-G~~G-G~v~gs~~li~~l~~~~~~~~~----------------s~s~~P~~~aaalaaL~~l 414 (430)
+...++||++.|+||++ |..| |++++++++++.++....++.+ ..+.++..++++.++++.+
T Consensus 179 ~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~ 258 (366)
T 1m32_A 179 IAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKEL 258 (366)
T ss_dssp TTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH
T ss_pred ccccCccEEEecCcccccCCCceEEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHH
Confidence 22124689999999987 5667 9999999988776553222211 2356777777788888877
Q ss_pred Hcc
Q psy2206 415 MGL 417 (430)
Q Consensus 415 ~~~ 417 (430)
.+.
T Consensus 259 ~~~ 261 (366)
T 1m32_A 259 AKE 261 (366)
T ss_dssp HHH
T ss_pred HHc
Confidence 554
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=7.6e-13 Score=131.77 Aligned_cols=113 Identities=19% Similarity=0.326 Sum_probs=85.9
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
++++|+++.+.+++|.+.| +++|+++|++||++||+||+|+.+.+|..+.++... . .++|+++.|+||++|++
T Consensus 152 ~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~--~--~~~~~~~~s~sK~~~~~ 227 (381)
T 1v2d_A 152 RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF--A--PERTFTVGSAGKRLEAT 227 (381)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH--C--TTTEEEEEEHHHHTTCG
T ss_pred CCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHh--c--CCCEEEEeechhhcCCc
Confidence 3567777899999999876 899999999999999999999877665544444332 1 35689999999999877
Q ss_pred c---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 373 G---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
| ||+++++++++.++..... .+.+.+++.++++.++|+..
T Consensus 228 G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~~ 270 (381)
T 1v2d_A 228 GYRVGWIVGPKEFMPRLAGMRQW--TSFSAPTPLQAGVAEALKLA 270 (381)
T ss_dssp GGCCEEEECCTTTHHHHHHHHHH--HTSSCCHHHHHHHHHHHHHH
T ss_pred ccceEEEEeCHHHHHHHHHHHhh--cccCCCcHHHHHHHHHHhCc
Confidence 7 9999999999888763322 12234566666677778765
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=6.3e-14 Score=140.52 Aligned_cols=115 Identities=18% Similarity=0.213 Sum_probs=82.4
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCC--CCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDP--REVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~--~~~dIv~~TlSKa~G 370 (430)
++++|+++.+.+++|.+.+ +++|+++|++||++||+||+|+...++ |.+....+.+.+ .+.+|+++||||++|
T Consensus 164 ~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 241 (392)
T 3b1d_A 164 DVKLYLLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLF--GHEHVSFNTVSPDFKDFALVLSSATKTFN 241 (392)
Confidence 3456777899999999876 999999999999999999999876553 222222233322 345789999999998
Q ss_pred ccc---ceeecCH-HHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 371 SMG---GYVAGSK-STIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 371 ~~G---G~v~gs~-~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
++| ||+++++ ++++.++.....+.++ +.+++.++++.++|+.
T Consensus 242 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~ 287 (392)
T 3b1d_A 242 IAGTKNSYAIIENPTLCAQFKHQQLVNNHH-EVSSLGYIATETAYRY 287 (392)
Confidence 888 9998864 5998887755443222 3456666666677653
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=4.3e-12 Score=127.75 Aligned_cols=110 Identities=18% Similarity=0.270 Sum_probs=81.2
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCc-cEEEeCccchhcc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREV-DILMGTYTKSFGS 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~-dIv~~TlSKa~G~ 371 (430)
++++|+++++.+++|.+.| +++|+++|++||++||+||+|+.+.++..... ...++ .+. ||+++||||++|+
T Consensus 174 ~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~-~~~~~---~~~~~i~~~s~sK~~~~ 249 (406)
T 1xi9_A 174 RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHIS-PGSLT---KDVPVIVMNGLSKVYFA 249 (406)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCC-HHHHC---SSSCEEEEEESTTTTCC
T ss_pred CceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCC-HHHcC---CCceEEEEeccccccCC
Confidence 3567788899999999876 99999999999999999999987666321111 12222 245 8999999999987
Q ss_pred cc---ceee--cCH----HHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 372 MG---GYVA--GSK----STIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 372 ~G---G~v~--gs~----~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
+| ||++ +++ ++++.++...... .+.+++.++++.++|+
T Consensus 250 ~G~r~G~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~a~~~~l~ 296 (406)
T 1xi9_A 250 TGWRLGYMYFVDPENKLSEVREAIDRLARIR---LCPNTPAQFAAIAGLT 296 (406)
T ss_dssp GGGCCEEEEEECTTCTTHHHHHHHHHHHHHT---CCSCSHHHHHHHHHHH
T ss_pred CccEEEEEEEecCchhHHHHHHHHHHHHHhh---cCCCHHHHHHHHHHHh
Confidence 77 9998 898 9998887643221 2345556666666664
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=3.2e-12 Score=130.23 Aligned_cols=113 Identities=12% Similarity=0.048 Sum_probs=81.3
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
++++|++..+.+++|.+.| +++|+++|++||+++|+||+|+...++ |........+..+...|+++||||+|+++
T Consensus 191 ~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~--g~~~~~~~~~~~~~~vi~~~S~sK~~~~~ 268 (427)
T 3dyd_A 191 KTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFS--DCKYEPLATLSTDVPILSCGGLAKRWLVP 268 (427)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCS--SCCCCCGGGGCSSCCEEEEEESTTTSSCG
T ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccC--CCcCccHHHhCCCCcEEEEeeccccCCCc
Confidence 3567778888999999999 999999999999999999999865553 33222211122222357899999999888
Q ss_pred c---ceeecC-------HHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 373 G---GYVAGS-------KSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 373 G---G~v~gs-------~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
| ||++++ +++++.+...... +.+++++.++++.++|+.
T Consensus 269 G~riG~~~~~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~a~~~~L~~ 316 (427)
T 3dyd_A 269 GWRLGWILIHDRRDIFGNEIRDGLVKLSQR---ILGPCTIVQGALKSILCR 316 (427)
T ss_dssp GGCCEEEEEECSTTSSHHHHHHHHHHHHHH---HCCSCHHHHHHHHHHHHH
T ss_pred CcceEEEEecCcchhhHHHHHHHHHHHHhc---cCCCCHHHHHHHHHHHHh
Confidence 8 998876 5788777654322 234667777777777763
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-12 Score=129.43 Aligned_cols=126 Identities=15% Similarity=0.084 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccce
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE 349 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e 349 (430)
+++|++++++. ++++|++..+.+++|.+.| +++|+++|++||++||+||+|+.+.++ |.....
T Consensus 153 ~~~l~~~l~~~------------~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--g~~~~~ 218 (399)
T 1c7n_A 153 FQKLEKLSKDK------------NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMP--GYEHTV 218 (399)
T ss_dssp HHHHHHHHTCT------------TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCT--TCCCCC
T ss_pred HHHHHHHhccC------------CCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccC--CCCccc
Confidence 57777776521 3567777889999999998 999999999999999999999875553 222222
Q ss_pred ecCCCC--CCccEEEeCccchhcccc---ceeecC-HHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 350 YFGIDP--REVDILMGTYTKSFGSMG---GYVAGS-KSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 350 ~~g~~~--~~~dIv~~TlSKa~G~~G---G~v~gs-~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
...+.+ .+.+|++.||||++|++| ||++++ +++++.++.....+.++ +.+++.++++.++|+.
T Consensus 219 ~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~a~~~~l~~ 287 (399)
T 1c7n_A 219 FQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIRERFTKSRDATSGM-PFTTLGYKACEICYKE 287 (399)
T ss_dssp GGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHHHHHHHHHHHTTCC-CCCHHHHHHHHHHHHH
T ss_pred HHHcCccccCcEEEEEeChhhccccchheEEEEECCHHHHHHHHHHHhhcccC-CCCHHHHHHHHHHHhC
Confidence 222211 134789999999998777 999886 67998887644332222 3566666667777753
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.8e-12 Score=129.95 Aligned_cols=115 Identities=17% Similarity=0.147 Sum_probs=84.0
Q ss_pred ceEEEEEcCccCCCCccc---CHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIV---RLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~---~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
++++|+++++.+++|.+. ++++|+++|++||++||+||+|+...++.........+... .+.+|++.||||++|++
T Consensus 167 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~sK~~g~~ 245 (410)
T 3e2y_A 167 KTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGM-WERTITIGSAGKTFSVT 245 (410)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTC-GGGEEEEEEHHHHSSCG
T ss_pred CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCc-cCeEEEEecchhhcCCC
Confidence 466788889999999995 69999999999999999999998655542221112222211 24579999999999988
Q ss_pred c---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 373 G---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
| ||+++++++++.++..... .+.+.+++.++++.++|+.
T Consensus 246 G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~ 287 (410)
T 3e2y_A 246 GWKLGWSIGPAHLIKHLQTVQQN--SFYTCATPLQAALAEAFWI 287 (410)
T ss_dssp GGCCEEEECCHHHHHHHHHHHHT--TTCCCCHHHHHHHHHHHHH
T ss_pred CceEEEEEECHHHHHHHHHHHHh--hccCCChHHHHHHHHHHHh
Confidence 8 9999999999988764322 2334566666667777763
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-12 Score=129.91 Aligned_cols=124 Identities=14% Similarity=0.161 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccce
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE 349 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e 349 (430)
+++|++.++. ++++|+++.+.+++|.+.| +++|+++|++||++||+||+|+.+.++.....+..
T Consensus 148 ~~~l~~~l~~-------------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 214 (376)
T 2dou_A 148 LKAVPEGVWR-------------EAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLA 214 (376)
T ss_dssp GGGSCHHHHH-------------HEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGG
T ss_pred HHHHHHhhcc-------------CceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhh
Confidence 5677777753 3556777788999999987 78899999999999999999987665432223333
Q ss_pred ecCCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 350 YFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 350 ~~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
..+. .+.+|+++||||++|++| ||+++++++++.++..... ++.+.+++.++++.++|+.
T Consensus 215 ~~~~--~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~a~~~~l~~ 277 (376)
T 2dou_A 215 LPGA--KERVVELFSLSKSYNLAGFRLGFALGSEEALARLERVKGV--IDFNQYAGVLRMGVEALKT 277 (376)
T ss_dssp STTG--GGTEEEEEEHHHHHTCGGGCCEEEEECHHHHHHHHHHHHH--HCCCSCHHHHHHHHHHHTS
T ss_pred cCCC--CCcEEEEecchhhcCChhheeEEEecCHHHHHHHHHHHHh--cccCCCHHHHHHHHHHHhC
Confidence 3221 245799999999998877 9999999999988764332 2334566666666666653
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-12 Score=129.97 Aligned_cols=115 Identities=16% Similarity=0.156 Sum_probs=84.6
Q ss_pred ceEEEEEcCccCCCCccc---CHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIV---RLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~---~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
++++|+++.+.+++|.+. ++++|+++|++||++||+||+|+..+++.........+... .+.+|+++||||++|++
T Consensus 174 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~S~sK~~g~~ 252 (422)
T 3fvs_A 174 RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGM-WERTLTIGSAGKTFSAT 252 (422)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTT-GGGEEEEEEHHHHHTCG
T ss_pred CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccc-cCcEEEEecchhccCCc
Confidence 466788889999999998 49999999999999999999998765543221112222211 24679999999999988
Q ss_pred c---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 373 G---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
| ||+++++++++.+....... +.+.+++.++++.++|+.
T Consensus 253 G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~ 294 (422)
T 3fvs_A 253 GWKVGWVLGPDHIMKHLRTVHQNS--VFHCPTQSQAAVAESFER 294 (422)
T ss_dssp GGCCEEEECCHHHHHHHHHHHHTT--TCCCCHHHHHHHHHHHHH
T ss_pred cceEEEEEeCHHHHHHHHHHHhhc--cCCCCcHHHHHHHHHHhh
Confidence 8 99999999999887643222 233566667767777764
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.6e-12 Score=126.93 Aligned_cols=109 Identities=10% Similarity=0.129 Sum_probs=77.2
Q ss_pred EEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCC---CccEEEeCccchhccc
Q psy2206 299 LIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPR---EVDILMGTYTKSFGSM 372 (430)
Q Consensus 299 lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~---~~dIv~~TlSKa~G~~ 372 (430)
+++++.+.+++|.+.| +++|+++|++||++||+||+|+.+.++.........++. + +.+|+++|+||++| +
T Consensus 166 v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~--~~~~~~~i~~~s~sK~~~-~ 242 (397)
T 2zyj_A 166 LYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAR--EAGYPGVIYLGSFSKVLS-P 242 (397)
T ss_dssp EEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHH--HHTCCCEEEEEESTTTTC-G
T ss_pred EEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCc--ccCCCeEEEEeccccccc-c
Confidence 3467899999999987 558999999999999999999876553211111112221 1 34589999999999 7
Q ss_pred c---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 373 G---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
| ||+++++++++.++.....+.+ +.+++.++++.++|+
T Consensus 243 G~r~G~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~a~~~~l~ 283 (397)
T 2zyj_A 243 GLRVAFAVAHPEALQKLVQAKQGADL--HTPMLNQMLVHELLK 283 (397)
T ss_dssp GGCCEEEECCHHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHT
T ss_pred cceeEEEecCHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHH
Confidence 7 9999999999988764433222 236666666666664
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.8e-12 Score=130.63 Aligned_cols=110 Identities=15% Similarity=0.193 Sum_probs=81.6
Q ss_pred ceEEEEEcC----ccCCCCcccCHHHHHHHHHh--cCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEG----IFSMDGSIVRLPEIVRLKNK--YKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~----v~sm~G~i~~L~~I~~La~~--y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
++++|++++ ++||+|.+.|+++|+++|++ ||++|++||+|+.++++... .. ..+||+++|+||++
T Consensus 159 ~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p--------~~-~g~Div~~S~sK~l 229 (409)
T 3jzl_A 159 KTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEP--------PE-VGADIIAGSLIKNP 229 (409)
T ss_dssp TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCS--------GG-GTCSEEEEETTSGG
T ss_pred CCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccccCCc--------cc-cCCeEEEECccccC
Confidence 477999999 99999999999999999999 99999999999877643211 11 24689999999999
Q ss_pred cc----ccceeecCHHHHHHHHhc--CCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 370 GS----MGGYVAGSKSTIDYIRAN--SHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 370 G~----~GG~v~gs~~li~~l~~~--~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
|. .|||+++++++++.++.. ........++++..+.+++..++.+
T Consensus 230 gg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~g~~~~~~~~~l~gl~~~ 280 (409)
T 3jzl_A 230 GGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGFFLA 280 (409)
T ss_dssp GTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH
T ss_pred CccCCceEEEEEeCHHHHHHHHHHhccccccccccccHHHHHHHHHHHhhH
Confidence 74 479999999999999873 2222233333332234455555543
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.3e-12 Score=128.76 Aligned_cols=127 Identities=13% Similarity=0.216 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++++... ..++++|+++++.+++|.+.|+++|+++|++||++||+||+|+.|..+. .+ ..+
T Consensus 132 ~~~l~~~l~~~~~--------~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~---~~-~~~- 198 (371)
T 2e7j_A 132 PENFAQTIEETKK--------RGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPV---SL-KEI- 198 (371)
T ss_dssp HHHHHHHHHHHTT--------TSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCC---CH-HHH-
T ss_pred HHHHHHHHHhhcc--------cCCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCC---Ch-hhc-
Confidence 6888888875310 0246789999999999999999999999999999999999998765421 11 112
Q ss_pred CCCCCccEEEeCccchhccc--cceeecCHHHHHH-HHhcCCcccc-----cCCCcHHHHHHHHHHHHHHHc
Q psy2206 353 IDPREVDILMGTYTKSFGSM--GGYVAGSKSTIDY-IRANSHVRSY-----ATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~--GG~v~gs~~li~~-l~~~~~~~~~-----s~s~~P~~~aaalaaL~~l~~ 416 (430)
+.||++.|+||+++.+ +|++++++++++. ++.....+.. +.+.++.+++++.++++.+..
T Consensus 199 ----~~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~ 266 (371)
T 2e7j_A 199 ----GADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRE 266 (371)
T ss_dssp ----TCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHH
T ss_pred ----CCCEEEecCCcCCCCCCCcEEEEEechhhhhhccccccCcccccccccCCcCHHHHHHHHHHHHHHHH
Confidence 2479999999998753 3899999988877 6554332233 455677777777788887754
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=6.9e-12 Score=124.11 Aligned_cols=123 Identities=18% Similarity=0.256 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+++. ++++|+++++.+++|.+.|+++|.++|++||++||+||+|+.|.. .++
T Consensus 137 ~~~l~~~i~~~------------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~---------~~~ 195 (393)
T 3kgw_A 137 LQEVEEGLAQH------------KPVLLFLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGV---------PIY 195 (393)
T ss_dssp HHHHHHHHHHH------------CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTS---------CCC
T ss_pred HHHHHHHHhhC------------CCcEEEEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCc---------ccc
Confidence 78899888762 245788999999999999999999999999999999999985532 122
Q ss_pred CCCCCccEEEeCccchh-cccc-ceeecCHHHHHHHHhcCCcc---------------------cccCCCcHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSF-GSMG-GYVAGSKSTIDYIRANSHVR---------------------SYATSMPPPVAMQILT 409 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~-G~~G-G~v~gs~~li~~l~~~~~~~---------------------~~s~s~~P~~~aaala 409 (430)
+....+|+++.|+||++ |..| |++++++++++.+....... ....+.++..++++.+
T Consensus 196 ~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 275 (393)
T 3kgw_A 196 MDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRE 275 (393)
T ss_dssp TTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHH
T ss_pred hhhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCCCHHHHHHHHH
Confidence 22234689999999988 4555 89999999999887532111 1234556777777778
Q ss_pred HHHHHHc
Q psy2206 410 SMRIIMG 416 (430)
Q Consensus 410 aL~~l~~ 416 (430)
+++.+.+
T Consensus 276 al~~~~~ 282 (393)
T 3kgw_A 276 SLALIAE 282 (393)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887654
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-12 Score=128.45 Aligned_cols=95 Identities=20% Similarity=0.268 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|+++|++ ++++|+++++.+++|.+.|+++|.++|++||++||+||+|+.|.... .. ..+
T Consensus 159 ~~~l~~~l~~-------------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~---~~-~~~- 220 (420)
T 1t3i_A 159 LEHFKTLLSE-------------KTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPL---DV-QLI- 220 (420)
T ss_dssp HHHHHHHCCT-------------TEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCC---CH-HHH-
T ss_pred HHHHHHhhCC-------------CceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccC---ch-hhc-
Confidence 5677766542 46788999999999999999999999999999999999998654310 11 112
Q ss_pred CCCCCccEEEeCccchhcccc-ceeecCHHHHHHHHhc
Q psy2206 353 IDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIRAN 389 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~~~ 389 (430)
++||++.|+||.+|..| |++++++++++.++..
T Consensus 221 ----~~di~~~s~sK~~~~~g~G~~~~~~~~~~~~~~~ 254 (420)
T 1t3i_A 221 ----DCDWLVASGHKMCAPTGIGFLYGKEEILEAMPPF 254 (420)
T ss_dssp ----TCSEEEEEGGGTTSCTTCEEEEECHHHHHHSCCC
T ss_pred ----CCCEEEEehhhhcCCCceEEEEEchHHHhhcCce
Confidence 35899999999988776 9999999999887653
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-12 Score=132.94 Aligned_cols=115 Identities=15% Similarity=0.222 Sum_probs=84.1
Q ss_pred ceEEEEEcCccCCCCccc---CHHHHHHHHHhcCcEEEEeccccccccCCCCCcccee-cCCCCCCccEEEeCccchhcc
Q psy2206 296 RKILIVVEGIFSMDGSIV---RLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEY-FGIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~---~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~-~g~~~~~~dIv~~TlSKa~G~ 371 (430)
++++|+++++.+++|.+. ++++|+++|++||++||+||+|+...++.....+... .+. .++||+++||||+||+
T Consensus 201 ~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~--~~~~i~i~S~sK~~~~ 278 (447)
T 3b46_A 201 KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEI--GQLTLTVGSAGKSFAA 278 (447)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHH--HTTEEEEEEHHHHTTC
T ss_pred CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCC--CCcEEEEecCchhcCC
Confidence 356777889999999986 4999999999999999999999876664321222211 111 2468999999999998
Q ss_pred cc---ceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MG---GYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~G---G~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
+| ||+++ ++++++.+........+ +.+++.++++.++|+..
T Consensus 279 ~G~riG~~~~~~~~l~~~l~~~~~~~~~--~~~~~~~~a~~~aL~~~ 323 (447)
T 3b46_A 279 TGWRIGWVLSLNAELLSYAAKAHTRICF--ASPSPLQEACANSINDA 323 (447)
T ss_dssp TTSCCEEEECSCHHHHHHHHHHHHHHTS--SCCHHHHHHHHHHHHHH
T ss_pred cchhhEEEEeCCHHHHHHHHHHHhhccC--CCChHHHHHHHHHHhCC
Confidence 88 99999 99999988764322222 34555566677778765
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.5e-12 Score=129.46 Aligned_cols=122 Identities=20% Similarity=0.235 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++++ ++++|+++++.+++|.+.|+++|+++|++||++||+||+|+.|.+. +.
T Consensus 153 ~~~l~~~i~~-------------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~---------~~ 210 (423)
T 3lvm_A 153 LKELEAAMRD-------------DTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLP---------ID 210 (423)
T ss_dssp HHHHHHHCCT-------------TEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSC---------CC
T ss_pred HHHHHHhcCC-------------CcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCC---------cC
Confidence 5777776543 4678999999999999999999999999999999999999865431 11
Q ss_pred CCCCCccEEEeCccchhcccc-ceeecCHHHHHHHHhcCCc-----ccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 353 IDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIRANSHV-----RSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~~~~~~-----~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
+...++||++.|+||.+|..| |++++++++++.+...... ...+.+.++..++++.++++.+.+
T Consensus 211 ~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 280 (423)
T 3lvm_A 211 LSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKE 280 (423)
T ss_dssp TTTSCCSEEEEESTTTTSCSSCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCEEEechHHhcCCCCeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHHHHH
Confidence 111246899999999988776 8888888776655432210 122345567777777778877654
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-11 Score=123.58 Aligned_cols=123 Identities=17% Similarity=0.222 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+++. ++++|+++++.+++|.+.|+++|+++|++||++||+||+|++|.. . ..
T Consensus 148 ~~~l~~~l~~~------------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~---~------~~ 206 (393)
T 1vjo_A 148 LEELRTALETH------------RPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGV---P------IF 206 (393)
T ss_dssp HHHHHHHHHHH------------CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTS---C------CC
T ss_pred HHHHHHHHhhC------------CceEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCc---C------Cc
Confidence 68888888752 234788899999999999999999999999999999999984421 1 11
Q ss_pred CCCCCccEEEeCccchhcccc--ceeecCHHHHHHHHhc---CCcc--------------cccC-CCcHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGSMG--GYVAGSKSTIDYIRAN---SHVR--------------SYAT-SMPPPVAMQILTSMR 412 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G--G~v~gs~~li~~l~~~---~~~~--------------~~s~-s~~P~~~aaalaaL~ 412 (430)
+...++||++.|+||+++.+| |++++++++++.++.. ..++ .+.. +.+++.++++.++|+
T Consensus 207 ~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~ 286 (393)
T 1vjo_A 207 LDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALR 286 (393)
T ss_dssp TTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHH
T ss_pred ccccCccEEEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHHHHHHHHHHHH
Confidence 222356999999999997765 8999999999988642 1111 1222 567777777888888
Q ss_pred HHHc
Q psy2206 413 IIMG 416 (430)
Q Consensus 413 ~l~~ 416 (430)
.+.+
T Consensus 287 ~~~~ 290 (393)
T 1vjo_A 287 LIAQ 290 (393)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=4.7e-12 Score=128.80 Aligned_cols=111 Identities=17% Similarity=0.055 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccce
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE 349 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e 349 (430)
+++|+++|++.... ..++++|+++.+.+++|.+.+ |++|+++|++||++||+||+|+.++++..+.....
T Consensus 175 ~~~l~~~l~~~~~~-------~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~ 247 (435)
T 3piu_A 175 ETALEEAYQEAEKR-------NLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVM 247 (435)
T ss_dssp HHHHHHHHHHHHHT-------TCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHH
T ss_pred HHHHHHHHHHHHhc-------CCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHH
Confidence 67788888764211 124678888889999999876 68889999999999999999987777543322211
Q ss_pred ecCCC--C------CCccEEEeCccchhcccc---ceeec-CHHHHHHHHhcC
Q psy2206 350 YFGID--P------REVDILMGTYTKSFGSMG---GYVAG-SKSTIDYIRANS 390 (430)
Q Consensus 350 ~~g~~--~------~~~dIv~~TlSKa~G~~G---G~v~g-s~~li~~l~~~~ 390 (430)
..... . .+.+|+++||||+||++| ||+++ ++++++.++...
T Consensus 248 ~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~ 300 (435)
T 3piu_A 248 EVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAATKMS 300 (435)
T ss_dssp HHHHC-------CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHHHHG
T ss_pred HhccccccccccCCCCCEEEEEeeecccCCCceeEEEEEeCCHHHHHHHHHHh
Confidence 11111 0 234589999999999888 99988 677888877643
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-11 Score=123.82 Aligned_cols=96 Identities=21% Similarity=0.302 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++++. ++++|+++.+.+++|.+.|+++|+++|++||++||+||+|+.|... +.
T Consensus 127 ~~~l~~~i~~~------------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~---------~~ 185 (411)
T 3nnk_A 127 PDQVEDAVKRI------------RPRLLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNP---------LE 185 (411)
T ss_dssp HHHHHHHHHHH------------CCSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBC---------CC
T ss_pred HHHHHHHHhhC------------CCeEEEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcc---------cc
Confidence 68888888752 2457888999999999999999999999999999999999865431 12
Q ss_pred CCCCCccEEEeCccchh-cccc-ceeecCHHHHHHHHhc
Q psy2206 353 IDPREVDILMGTYTKSF-GSMG-GYVAGSKSTIDYIRAN 389 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~-G~~G-G~v~gs~~li~~l~~~ 389 (430)
.....+|+++.|++|++ |..| |++++++++++.++..
T Consensus 186 ~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~ 224 (411)
T 3nnk_A 186 TDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRR 224 (411)
T ss_dssp TTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTT
T ss_pred hhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhc
Confidence 22224689999999985 5555 8999999999988763
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-12 Score=128.74 Aligned_cols=124 Identities=15% Similarity=0.224 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccce
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE 349 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e 349 (430)
+++|+++++. ++++|+++.+.+++|.+.| +++|+++|++||++||+||+|+...++ |.+...
T Consensus 153 ~~~l~~~l~~-------------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--g~~~~~ 217 (386)
T 1u08_A 153 WQEFAALLSE-------------RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFS--QQGHAS 217 (386)
T ss_dssp HHHHHHHCCT-------------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCC--SSCCCC
T ss_pred HHHHHHhhcc-------------cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccC--CCCCcC
Confidence 5677766532 3567777899999999886 799999999999999999999876553 222111
Q ss_pred ecCCC-CCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 350 YFGID-PREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 350 ~~g~~-~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
...+. ..+.||+++||||++|++| ||+++++++++.++...... +.+.+++.++++.++|+.
T Consensus 218 ~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~ 283 (386)
T 1u08_A 218 VLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYL--TFSVNTPAQLALADMLRA 283 (386)
T ss_dssp GGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHHHHHHHHHHH--TSSCCHHHHHHHHHHHHH
T ss_pred hhcccCccCcEEEEecchhhcCCcccceEEEEcCHHHHHHHHHHHHhh--ccCCChHHHHHHHHHHhC
Confidence 11111 1246899999999999877 99999999999887643222 223455556666667764
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.3e-12 Score=128.90 Aligned_cols=122 Identities=17% Similarity=0.194 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcC----ccCCCCcccCHHHHHHHHHh--cCcEEEEeccccccccCCCCCc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEG----IFSMDGSIVRLPEIVRLKNK--YKAYLYVDEAHSIGALGPTGRG 346 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~----v~sm~G~i~~L~~I~~La~~--y~~~LivDEAh~~G~lG~~GrG 346 (430)
+++|++++++. .++++|++++ +++|+|.+.|+++|+++|++ ||++|++||+|+.++++.. .
T Consensus 164 ~e~l~~~i~~~-----------~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~--p 230 (427)
T 3hvy_A 164 INTVKEELKKD-----------DSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKE--P 230 (427)
T ss_dssp HHHHHHHHHHC-----------TTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSC--G
T ss_pred HHHHHHHhhCC-----------CCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccccccCCC--C
Confidence 67788887641 1477999999 99999999999999999999 8999999999987764321 1
Q ss_pred cceecCCCCCCccEEEeCccchhcc----ccceeecCHHHHHHHHhc--CCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 347 VTEYFGIDPREVDILMGTYTKSFGS----MGGYVAGSKSTIDYIRAN--SHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 347 ~~e~~g~~~~~~dIv~~TlSKa~G~----~GG~v~gs~~li~~l~~~--~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
+. ..+||+++|+||++|. .|||+++++++++.++.. ......+.++++..+..++..++.+
T Consensus 231 ------~~-~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~~~gl~~~ 297 (427)
T 3hvy_A 231 ------TD-VGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRSLYEGLFMA 297 (427)
T ss_dssp ------GG-GTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHHHHHHHHH
T ss_pred ------cc-cCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccCCCHHHHHHHHHhHhHH
Confidence 11 2458999999999974 679999999999999873 3333233333333345555555543
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.2e-12 Score=129.10 Aligned_cols=124 Identities=14% Similarity=0.136 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccce
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE 349 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e 349 (430)
+++|+++++. ++++|+++.+.+++|.+.| +++|+++|++||++||+||+|+.+.++.....+..
T Consensus 171 ~~~l~~~l~~-------------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~ 237 (404)
T 2o1b_A 171 WSKVDSQIID-------------KTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILA 237 (404)
T ss_dssp GGGSCHHHHH-------------HEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGG
T ss_pred HHHHHHhhcc-------------CceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhh
Confidence 5677777753 3556777788999999986 88999999999999999999987655321112222
Q ss_pred ecCCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 350 YFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 350 ~~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
..+ ..+.+|+++||||++|++| ||+++++++++.++..... ++.+.+++.++++.++|+.
T Consensus 238 ~~~--~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~a~~~~l~~ 300 (404)
T 2o1b_A 238 SEN--GKDVAIEIYSLSKGYNMSGFRVGFAVGNKDMIQALKKYQTH--TNAGMFGALQDAAIYALNH 300 (404)
T ss_dssp STT--HHHHEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHHH
T ss_pred cCC--CCCCEEEEEecchhccCchhheEeEecCHHHHHHHHHHHhh--ccCCCCHHHHHHHHHHHhc
Confidence 111 1246899999999998877 9999999999988764322 2334666777777777765
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-11 Score=121.83 Aligned_cols=123 Identities=20% Similarity=0.334 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++++. ++++|+++++.+++|.+.|+++|.++|++||++||+||+|+.+... .+
T Consensus 116 ~~~l~~~i~~~------------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~---------~~ 174 (384)
T 3zrp_A 116 PGEVEEEVRKS------------EYKLVALTHVETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEE---------VK 174 (384)
T ss_dssp HHHHHHHHHHS------------CEEEEEEESEETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSC---------CC
T ss_pred HHHHHHHHHhC------------CCcEEEEeCCCCCCceECcHHHHHHHHHhcCCEEEEECcccccCcc---------cc
Confidence 67888888752 3678899999999999999999999999999999999999865431 12
Q ss_pred CCCCCccEEEeCccchhc-ccc-ceeecCHHHHHHH-Hh------------cC---------CcccccCCCcHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFG-SMG-GYVAGSKSTIDYI-RA------------NS---------HVRSYATSMPPPVAMQIL 408 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G-~~G-G~v~gs~~li~~l-~~------------~~---------~~~~~s~s~~P~~~aaal 408 (430)
+...++|+++.|+||+++ ..| |++++++++++.+ .. .. ... ..++.++..++++.
T Consensus 175 ~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~a~~ 253 (384)
T 3zrp_A 175 AEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKAA-YFATPPVHVILQLA 253 (384)
T ss_dssp TTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCCC-CSSCCCHHHHHHHH
T ss_pred ccccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCCC-cCCCCCHHHHHHHH
Confidence 222246899999999985 555 8999999998877 21 00 111 11246666777777
Q ss_pred HHHHHHHcc
Q psy2206 409 TSMRIIMGL 417 (430)
Q Consensus 409 aaL~~l~~~ 417 (430)
++++.+...
T Consensus 254 ~al~~~~~~ 262 (384)
T 3zrp_A 254 EAFRLIEKE 262 (384)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 788876543
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.5e-11 Score=119.91 Aligned_cols=106 Identities=19% Similarity=0.165 Sum_probs=78.9
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhc--CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKY--KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y--~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~ 371 (430)
+++|+++.+.+++|.+.+ +++|+++|++| |+++|+||+|+... + .+.....+. .+.++++.||||+ ++
T Consensus 158 ~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~-~---~~~~~~~~~--~~~~i~~~s~sK~-~~ 230 (367)
T 3euc_A 158 PAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFA-Q---ESWMSRLTD--FGNLLVMRTVSKL-GL 230 (367)
T ss_dssp CSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSS-S---CCSGGGGGT--CTTEEEEEECCCT-TS
T ss_pred CCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhc-c---cchHHHHhh--CCCEEEEecchhh-cc
Confidence 456777899999999864 88888889999 99999999997532 1 122222222 2457899999999 87
Q ss_pred cc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 372 MG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 372 ~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
+| ||+++++++++.++..... ...+++.++++.++|+.
T Consensus 231 ~G~r~G~~~~~~~~~~~~~~~~~~----~~~~~~~~~a~~~~l~~ 271 (367)
T 3euc_A 231 AGIRLGYVAGDPQWLEQLDKVRPP----YNVNVLTEATALFALEH 271 (367)
T ss_dssp CSCCEEEEEECHHHHHHHGGGCCS----SCCCHHHHHHHHHHHTT
T ss_pred cccCceeeeeCHHHHHHHHHhCCC----CCCCHHHHHHHHHHhcC
Confidence 77 9999999999998875543 23677777777777754
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.28 E-value=4e-12 Score=128.14 Aligned_cols=114 Identities=18% Similarity=0.260 Sum_probs=81.2
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCC-CCCccEEEeCccchhcc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGID-PREVDILMGTYTKSFGS 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~-~~~~dIv~~TlSKa~G~ 371 (430)
++++|+++++.+++|.+.| +++|+++|++||++||+||+|+.+.++ |.+......+. ..+.|+++.||||++|+
T Consensus 160 ~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 237 (411)
T 2o0r_A 160 RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFD--HARHLPLAGFDGMAERTITISSAAKMFNC 237 (411)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCT--TCCCCCGGGSTTTGGGEEEEEEHHHHTTC
T ss_pred CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccC--CCCCcChhhccCCCCCEEEEeechhhcCC
Confidence 3567778899999999977 699999999999999999999876653 22211111121 13579999999999997
Q ss_pred cc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 372 MG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 372 ~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
+| ||+++++++++.+........++ .+++..+++.++|+.
T Consensus 238 ~G~r~G~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~l~~ 280 (411)
T 2o0r_A 238 TGWKIGWACGPAELIAGVRAAKQYLSYV--GGAPFQPAVALALDT 280 (411)
T ss_dssp TTTCEEEEECCHHHHHHHHHHHHHHTSC--CCTTHHHHHHHHHHH
T ss_pred ccceEEEEeeCHHHHHHHHHHHhhccCC--CChHHHHHHHHHHhC
Confidence 77 99999999999887643222232 334444555666654
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-11 Score=121.86 Aligned_cols=124 Identities=19% Similarity=0.142 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHh--cCcEEEEeccccccccCCCCCcccee
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNK--YKAYLYVDEAHSIGALGPTGRGVTEY 350 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~--y~~~LivDEAh~~G~lG~~GrG~~e~ 350 (430)
+++|++++++. .++++|+++.+.+++|.+.|++++.++++. ||++||+||+|+...++..+......
T Consensus 129 ~~~l~~~l~~~-----------~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~ 197 (354)
T 3ly1_A 129 IEGLKAAVAAY-----------SGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPM 197 (354)
T ss_dssp HHHHHHHHHTC-----------SSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHH
T ss_pred HHHHHHHhccC-----------CCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHH
Confidence 68888888631 135677778899999999998888888877 99999999999865554333233332
Q ss_pred cCCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 351 FGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 351 ~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
.+.. .+.+|+++||||++|++| ||+++++++++.++..... .+.+++.++++.++|+
T Consensus 198 ~~~~-~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~----~~~~~~~~~a~~~~l~ 257 (354)
T 3ly1_A 198 ITQG-AENIILLKTFSKIHAMAGMRVGYAVAHPTVIALMGRYVAG----EKINFSGVDAALASMN 257 (354)
T ss_dssp HHTT-CSSEEEEEESSSTTCCGGGCCEEEECCHHHHHHHGGGTTC----SCCCHHHHHHHHHHTT
T ss_pred hhhc-CCCEEEEeeChhhccChhhhheeeecCHHHHHHHHHhcCC----CCCCHHHHHHHHHHhc
Confidence 2211 145799999999998877 9999999999999876543 3467777776777665
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.3e-12 Score=124.90 Aligned_cols=124 Identities=21% Similarity=0.248 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCC-CCCccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGP-TGRGVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~-~GrG~~ 348 (430)
+++|++++.+ ++++|+++.+.+++|.+.| +++|+++|++||++||+||+|+...++. ...+..
T Consensus 158 ~~~l~~~~~~-------------~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 224 (396)
T 3jtx_A 158 WRSISEEVWK-------------RTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCL 224 (396)
T ss_dssp GGGSCHHHHH-------------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHH
T ss_pred HHHHHHhhcc-------------CcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHH
Confidence 5677777765 3556777788999999987 5559999999999999999998655532 111221
Q ss_pred ee---cCCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 349 EY---FGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 349 e~---~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
.. ++.. .+.+|+++||||++|++| ||+++++++++.+..... .++.+++++.++++.++|+
T Consensus 225 ~~~~~~~~~-~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~l~ 291 (396)
T 3jtx_A 225 QAAAQLGRS-RQKLLMFTSLSKRSNVPGLRSGFVAGDAELLKNFLLYRT--YHGSAMSIPVQRASIAAWD 291 (396)
T ss_dssp HHHHHTTCC-CTTEEEEEESTTTSSCGGGCCEEEEECHHHHHHHHHHHH--HHTCCCCHHHHHHHHHHHH
T ss_pred hhhhhcccc-cCcEEEEeccccccCCcccceEEEEeCHHHHHHHHHHHh--hcccCCCHHHHHHHHHHhC
Confidence 11 1111 246899999999998888 999999999998876432 2344567777777777764
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.27 E-value=5.2e-12 Score=125.08 Aligned_cols=114 Identities=15% Similarity=0.094 Sum_probs=82.8
Q ss_pred EEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC---CCCCCccEEEeCccchhcc
Q psy2206 298 ILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG---IDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 298 ~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g---~~~~~~dIv~~TlSKa~G~ 371 (430)
++|++..+.+++|.+.| +++|+++|++||++||+||+|+...++.....+....+ ....+.+|+++||||++|+
T Consensus 156 ~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 235 (376)
T 3ezs_A 156 DLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSA 235 (376)
T ss_dssp SEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTC
T ss_pred CEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCC
Confidence 36666788999999987 77888889999999999999987665432222222110 0013568999999999988
Q ss_pred cc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 372 MG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 372 ~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
+| ||+++++++++.+...... ++.+.+++.++++.++|+.
T Consensus 236 ~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~ 278 (376)
T 3ezs_A 236 PGLRSGFIAGDSRLLEKYKAFRAY--LGYTSANAIQKASEAAWLD 278 (376)
T ss_dssp GGGCCEEEEECHHHHHHHHHHHTT--TCCCCCHHHHHHHHHHHHC
T ss_pred ccceeEEEeeCHHHHHHHHHHHhh--hcCCCChHHHHHHHHHHhC
Confidence 88 9999999999998875433 2345677777777777653
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.27 E-value=9.9e-12 Score=126.17 Aligned_cols=131 Identities=21% Similarity=0.203 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEE-EEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILI-VVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lI-i~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~ 348 (430)
+++|+++|++....++ ..++++| ++..+.+++|.+.| +++|+++|++||++||+||+|+.+.++.......
T Consensus 169 ~~~l~~~l~~~~~~~~-----~~~~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~ 243 (425)
T 1vp4_A 169 LNVLERKLSEFDKNGK-----IKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPI 243 (425)
T ss_dssp HHHHHHHHHHHHHTTC-----GGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCH
T ss_pred HHHHHHHHHhhhhccc-----CCCceEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCH
Confidence 6778888765210000 0134565 68899999999987 7789999999999999999998766542221111
Q ss_pred eecCCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 349 EYFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 349 e~~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
..++ +.+.+|+++||||++| +| ||+++++++++.++.....+ +.+.+++.++++.++|+.
T Consensus 244 ~~~~--~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~a~~~~l~~ 306 (425)
T 1vp4_A 244 FKIG--GPERVVLLNTFSKVLA-PGLRIGMVAGSKEFIRKIVQAKQSA--DLCSPAITHRLAARYLER 306 (425)
T ss_dssp HHHH--CTTTEEEEEESTTTTC-GGGCEEEEECCHHHHHHHHHHHHHH--HSSCCHHHHHHHHHHHHH
T ss_pred HHhC--CCCCEEEEeccccccc-cccceEEEeeCHHHHHHHHHHhhhh--cCCCCHHHHHHHHHHHhc
Confidence 1222 2345799999999999 77 99999999999887644332 233467777777777765
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=2e-11 Score=121.34 Aligned_cols=124 Identities=18% Similarity=0.217 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|+++|++. + ++++|+++++.+++|.+.|+++|+++|++||++||+||+|+.|... .+
T Consensus 122 ~~~l~~~l~~~-----~------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~---------~~ 181 (392)
T 2z9v_A 122 PQAVADMLKAH-----P------EITVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMK---------TH 181 (392)
T ss_dssp HHHHHHHHHHC-----T------TCCEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBS---------CC
T ss_pred HHHHHHHHhcC-----C------CCcEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcc---------cc
Confidence 68888888641 1 3457888999999999999999999999999999999999865321 11
Q ss_pred CCCCCccEEEeCccchh-cccc-ceeecCHHHHHHHHhcC------------------CcccccCCCcHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSF-GSMG-GYVAGSKSTIDYIRANS------------------HVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~-G~~G-G~v~gs~~li~~l~~~~------------------~~~~~s~s~~P~~~aaalaaL~ 412 (430)
+...++|+++.|+||++ |.+| |++++++++++.++... .......+.++..++++.++++
T Consensus 182 ~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~ 261 (392)
T 2z9v_A 182 PEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTPSVSEINGLDVALD 261 (392)
T ss_dssp GGGGTCSEEEECSSSTTCCCSCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHH
T ss_pred cccccceEEEecCcccccCCCceeEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHH
Confidence 11113589999999976 4566 89999999998886421 0112344556666666777887
Q ss_pred HHHc
Q psy2206 413 IIMG 416 (430)
Q Consensus 413 ~l~~ 416 (430)
.+.+
T Consensus 262 ~~~~ 265 (392)
T 2z9v_A 262 LYLN 265 (392)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=5.8e-12 Score=124.75 Aligned_cols=121 Identities=20% Similarity=0.232 Sum_probs=87.0
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHH----hcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccc-hhc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKN----KYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTK-SFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~----~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSK-a~G 370 (430)
++++|+++++.+++|.+.|+++|+++|+ +||++||+||+|+.|... .++....+|+++.|+|| .+|
T Consensus 154 ~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~---------~~~~~~~~d~~~~s~~K~~~~ 224 (390)
T 1elu_A 154 KTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLP---------LDFSRLEVDYYAFTGHKWFAG 224 (390)
T ss_dssp TEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBC---------CCTTTSCCSEEEEESSSTTCC
T ss_pred CceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcC---------CChhhcCCCEEEccccccccC
Confidence 4678899999999999999999999999 999999999999864321 11221246899999999 667
Q ss_pred ccc-ceeecCHHHHHHHHhcCC---------------------cccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 371 SMG-GYVAGSKSTIDYIRANSH---------------------VRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 371 ~~G-G~v~gs~~li~~l~~~~~---------------------~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
..| |++++++++++.++.... .+. ..+.++..++++.++++.+.+++..++..++
T Consensus 225 ~~g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~ 301 (390)
T 1elu_A 225 PAGVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGGKRFE-VATSAYPQYAGLLAALQLHQRQGTAEERYQA 301 (390)
T ss_dssp CTTCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGGGGGC-CSCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CCceEEEEECHHhHhhcCCccccCCcccccccCcccccccchHhhC-CCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777 999999988877654211 111 2345666666677888877654433334333
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.2e-11 Score=121.04 Aligned_cols=123 Identities=15% Similarity=0.179 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|+++|++. ++++|+++.+.+++|.+.|+++|+++|++||++||+||+|+.|.. ..+
T Consensus 133 ~~~l~~~i~~~------------~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~---------~~~ 191 (393)
T 2huf_A 133 LDEIRDALLIH------------KPSVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGA---------PMF 191 (393)
T ss_dssp HHHHHHHHHHH------------CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTB---------CCC
T ss_pred HHHHHHHHhcc------------CCcEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCC---------Ccc
Confidence 68888888652 234777889999999999999999999999999999999975432 111
Q ss_pred CCCCCccEEEeCccchh-cccc-ceeecCHHHHHHHHhc---CCccc------------------ccCCCcHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSF-GSMG-GYVAGSKSTIDYIRAN---SHVRS------------------YATSMPPPVAMQILT 409 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~-G~~G-G~v~gs~~li~~l~~~---~~~~~------------------~s~s~~P~~~aaala 409 (430)
+...++|+++.|+||++ |.+| |++++++++++.++.. ..++. ...+.++..++++.+
T Consensus 192 ~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 271 (393)
T 2huf_A 192 MDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLRE 271 (393)
T ss_dssp TTTTTCSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHH
T ss_pred hhhcCccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCCCHHHHHHHHH
Confidence 22124689999999986 4566 8999999999988764 12221 112455666666667
Q ss_pred HHHHHHc
Q psy2206 410 SMRIIMG 416 (430)
Q Consensus 410 aL~~l~~ 416 (430)
+++.+.+
T Consensus 272 al~~~~~ 278 (393)
T 2huf_A 272 AIAMACE 278 (393)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877643
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-11 Score=120.48 Aligned_cols=120 Identities=12% Similarity=0.146 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhc--CcEEEEeccccccccCCCCCcccee
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKY--KAYLYVDEAHSIGALGPTGRGVTEY 350 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y--~~~LivDEAh~~G~lG~~GrG~~e~ 350 (430)
+++|++.+.+ ++++|+++.+.+++|.+.|+++|.++++.+ |+++|+||+|+.+++| ...+....
T Consensus 145 ~~~l~~~i~~-------------~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~-~~~~~~~~ 210 (363)
T 3ffh_A 145 LEGMLNAIDE-------------KTTIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTP-QPEKHEKL 210 (363)
T ss_dssp HHHHHHHCCT-------------TEEEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSS-CCCCCGGG
T ss_pred HHHHHHhccc-------------CCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCc-cccCHHHH
Confidence 5667766532 466788889999999999999999999888 9999999999865442 22233333
Q ss_pred cCCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 351 FGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 351 ~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
.+. .+.+|+++||||++|++| ||+++++++++.++.... +.+++++.++++.++|+
T Consensus 211 ~~~--~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~l~ 269 (363)
T 3ffh_A 211 VRT--YKNLIITRTFSKIYGLASARVGYGIADKEIIRQLNIVRP----PFNTTSIGQKLAIEAIK 269 (363)
T ss_dssp GGT--CTTEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHHTCC----SCCCBHHHHHHHHHHHH
T ss_pred hhc--CCCEEEEeechhhhcCchhceeeeecCHHHHHHHHHhCC----CCCCCHHHHHHHHHHhc
Confidence 222 245789999999999877 999999999999988554 23477888887777775
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.7e-12 Score=126.09 Aligned_cols=122 Identities=14% Similarity=0.086 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|+++|++ ++++|+++++.+++|.+.|+++|.++|++||++||+||+|+.|... ..+ ..+
T Consensus 155 ~~~l~~~l~~-------------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~---~~~-~~~- 216 (406)
T 3cai_A 155 TWQWESLISK-------------STRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRL---LDI-RET- 216 (406)
T ss_dssp GGGHHHHCCT-------------TEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCC---CCH-HHH-
T ss_pred HHHHHHHhCC-------------CceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCC---CCc-hhc-
Confidence 6777776642 4678999999999999999999999999999999999999865321 111 112
Q ss_pred CCCCCccEEEeCccchhccccc-eeecCHHHHHHHHhcCCcc------cc-cCCCcHHHHHHHHHHHHHHHc
Q psy2206 353 IDPREVDILMGTYTKSFGSMGG-YVAGSKSTIDYIRANSHVR------SY-ATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~GG-~v~gs~~li~~l~~~~~~~------~~-s~s~~P~~~aaalaaL~~l~~ 416 (430)
++|+++.|+||.+|..+| ++++++++++.++.....+ .+ ..+.++..++++.++++.+.+
T Consensus 217 ----~~d~~~~s~~K~~g~~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~ 284 (406)
T 3cai_A 217 ----DADVVTVNAHAWGGPPIGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAA 284 (406)
T ss_dssp ----CCSEEEEEGGGGTSCSCEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHHHHHHHHHT
T ss_pred ----CCCEEEeehhhhcCCCcCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHHHHHHHHHH
Confidence 358999999999886567 9999999887765432110 11 344667777777788888765
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.26 E-value=6.1e-12 Score=124.52 Aligned_cols=111 Identities=18% Similarity=0.240 Sum_probs=82.4
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++|+++++++++|.+.| +++|+++|++||++||+||+|+ + +|..+.++ .+.++.. .|++ ||||.++
T Consensus 172 ~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~-~-~~~~~~~~~~~~~~~~---~d~~--s~SK~~~ 244 (375)
T 2eh6_A 172 ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQT-G-IGRTGEFYAYQHFNLK---PDVI--ALAKGLG 244 (375)
T ss_dssp TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSGGGGGTCC---CSEE--EECGGGG
T ss_pred CeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEecccc-C-CCCCCcchhhhhcCCC---CCEE--EEccccc
Confidence 4678888999999999988 9999999999999999999998 3 45545433 3444532 4666 8999998
Q ss_pred c--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHH
Q psy2206 371 S--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 371 ~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
. ..|++++++++++.++.... ..+.+.+++.++++.++|+.+.
T Consensus 245 ~g~~~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~ 289 (375)
T 2eh6_A 245 GGVPIGAILAREEVAQSFTPGSH--GSTFGGNPLACRAGTVVVDEVE 289 (375)
T ss_dssp TTSCCEEEEEEHHHHTTCCTTSC--CCSSTTCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEcHHHHhhhcCCCC--CCCCCCCHHHHHHHHHHHHHHH
Confidence 4 12888888888876654222 2333457888887888888764
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.3e-11 Score=121.40 Aligned_cols=125 Identities=15% Similarity=0.094 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccce
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE 349 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e 349 (430)
+++|++++++. ++++|++..+.+++|.+.| +++|+++|++||++||+||+|+.+.++ |.....
T Consensus 151 ~~~l~~~l~~~------------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~--g~~~~~ 216 (390)
T 1d2f_A 151 MGKLEAVLAKP------------ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWG--EQPHIP 216 (390)
T ss_dssp HHHHHHHHTST------------TEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCS--SSCCCC
T ss_pred HHHHHHHhccC------------CCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccC--CCCCcC
Confidence 67777776531 3456666688999999987 899999999999999999999876543 333322
Q ss_pred ecCCCCCCccEEEeCccchhcccc---ceeecC-HHHHHHHHhcCC-cccccCCCcHHHHHHHHHHHHH
Q psy2206 350 YFGIDPREVDILMGTYTKSFGSMG---GYVAGS-KSTIDYIRANSH-VRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 350 ~~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs-~~li~~l~~~~~-~~~~s~s~~P~~~aaalaaL~~ 413 (430)
...+.+.-.|+ +.||||++|++| ||++++ +++++.++.... .+.++ +.+++.++++.++++.
T Consensus 217 ~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~ 283 (390)
T 1d2f_A 217 WSNVARGDWAL-LTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLS-SPSVLALTAHIAAYQQ 283 (390)
T ss_dssp GGGTCCSSEEE-EECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTTSCCC-SCCHHHHHHHHHHHHH
T ss_pred HHHcchhhHhh-ccCccHhhcccChhheEEEECCHHHHHHHHHHHhhhcccC-CCCHHHHHHHHHHHhc
Confidence 23332211266 899999998777 999874 788888776432 22222 4566666667777764
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.9e-11 Score=120.92 Aligned_cols=95 Identities=20% Similarity=0.252 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++++. ++++|+++.+.+++|.+.|+++|.++|++||++||+||+|+.|.+. .+
T Consensus 125 ~~~l~~~i~~~------------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~---------~~ 183 (416)
T 3isl_A 125 PEDIIREIKKV------------KPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGCE---------VK 183 (416)
T ss_dssp HHHHHHHHHHH------------CCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTTTTTSC---------CC
T ss_pred HHHHHHHHhhC------------CCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCccccCCC---------cc
Confidence 68888888742 3458899999999999999999999999999999999999866432 11
Q ss_pred CCCCCccEEEeCccchh-cccc-ceeecCHHHHHHHHh
Q psy2206 353 IDPREVDILMGTYTKSF-GSMG-GYVAGSKSTIDYIRA 388 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~-G~~G-G~v~gs~~li~~l~~ 388 (430)
+....+|+++.|++|++ |..| |++++++++++.+..
T Consensus 184 ~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~ 221 (416)
T 3isl_A 184 VDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAA 221 (416)
T ss_dssp TTTTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHT
T ss_pred hhhcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhc
Confidence 22124689999999984 5555 899999999988874
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=1.1e-11 Score=124.83 Aligned_cols=107 Identities=19% Similarity=0.215 Sum_probs=84.1
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc---
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM--- 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~--- 372 (430)
++++|+++++.+++|.+.|+++|+++|++||++||+||+|+.++++. . . .+ ++||++.|+||+++++
T Consensus 149 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~---~-~-~~-----~~di~~~s~sK~~~~~g~~ 218 (398)
T 2rfv_A 149 ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQ---P-L-QL-----GADIVVHSVTKYINGHGDV 218 (398)
T ss_dssp TEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC---G-G-GG-----TCSEEEEETTTTTTCSSCC
T ss_pred CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC---c-h-hh-----CCcEEEEeCcccccCCCCc
Confidence 46789999999999999999999999999999999999999876532 1 1 11 3589999999999764
Q ss_pred -cceeecCHHHHH-HHHhcCCcccc-cCCCcHHHHHHHHHHHHHH
Q psy2206 373 -GGYVAGSKSTID-YIRANSHVRSY-ATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 373 -GG~v~gs~~li~-~l~~~~~~~~~-s~s~~P~~~aaalaaL~~l 414 (430)
||++++++++++ .++... ..+ +.+++|+.+++++++++.+
T Consensus 219 ~~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~ 261 (398)
T 2rfv_A 219 IGGIIVGKQEFIDQARFVGL--KDITGGCMSPFNAWLTLRGVKTL 261 (398)
T ss_dssp CCEEEEECHHHHHHHHHTHH--HHTTCCCCCHHHHHHHHHHHTTH
T ss_pred eEEEEEECHHHHHHHHHHHH--HhCCCCCCCHHHHHHHHhhhhhH
Confidence 599999999887 555422 123 4467888888888887654
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=9.9e-14 Score=152.16 Aligned_cols=116 Identities=18% Similarity=0.172 Sum_probs=73.7
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccc-cCCCCCcc--c--eecCCCCCCccEEEeCccchhcc
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGA-LGPTGRGV--T--EYFGIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~-lG~~GrG~--~--e~~g~~~~~~dIv~~TlSKa~G~ 371 (430)
+.++|+.+ +.+|.+.|+++|+++|++||++|++||||+.++ +++.++|. . +.++.+ +..++++.|+||+++.
T Consensus 283 klviv~~p--n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~~l~~~~~g~D-~~~~iv~~S~hK~L~g 359 (730)
T 1c4k_A 283 RLAVIQLG--TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPE-DPGIIVVQSVHKQQAG 359 (730)
T ss_dssp SEEEEESB--CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTT-SCEEEEEECHHHHSSC
T ss_pred eEEEEECC--CCCCeecCHHHHHHHHHHcCCeEEEEcccccccccCcccCCcCcccccccCCC-CCCEEEEECCCCCCCC
Confidence 44556655 358999999999999999999999999998653 44433321 1 122331 1123999999999975
Q ss_pred c--cceee-------cCHHHHH--HHHhcCCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 372 M--GGYVA-------GSKSTID--YIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 372 ~--GG~v~-------gs~~li~--~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
+ ||++. +++..++ .+.. ......++++++..+++..++++.+..
T Consensus 360 ~~~gg~I~v~~~~l~g~~~~i~~~~~~~-~~~~~~stsp~~~~iaal~aA~~~l~~ 414 (730)
T 1c4k_A 360 FSQTSQIHKKDSHIKGQLRYCDHKHFNN-SFNLFMSTSPFYPMYAALDVNAAMQEG 414 (730)
T ss_dssp CTTCEEEEEECGGGTTSTTCCCHHHHHH-HHHHHSCSSCCHHHHHHHHHHHHHHSH
T ss_pred CCCEEEEEecchhhcCcccccCHHHHHH-HHHHhCCCCCcHHHHHHHHHHHHHHHh
Confidence 3 56773 2222222 2221 112234667777777777778887754
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=8e-12 Score=126.10 Aligned_cols=107 Identities=16% Similarity=0.156 Sum_probs=85.5
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc---
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM--- 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~--- 372 (430)
++++|++|++.+++|.+.|+++|.++|++||+++|+||+|+.++++. ..+ ...||++.|+||.++.+
T Consensus 144 ~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~-------~~~---~~~di~~~S~sK~~~~~~~~ 213 (389)
T 3acz_A 144 NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLK-------PLE---LGADIALHSVSKYINGHGDV 213 (389)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCC-------GGG---TTCSEEEEETTTTTTCSSCC
T ss_pred CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccC-------ccc---cCCeEEEECChhhccCCCCc
Confidence 46789999999999999999999999999999999999998775421 111 24589999999999865
Q ss_pred -cceeecCH-HHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 373 -GGYVAGSK-STIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 373 -GG~v~gs~-~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
||++++++ ++++.++..... ++..++|..+++++++++.+
T Consensus 214 ~~G~v~~~~~~~~~~l~~~~~~--~g~~~~~~~~~~~~~~l~~l 255 (389)
T 3acz_A 214 IGGVSSAKTAEDIATIKFYRKD--AGSLMAPMDAFLCARGMKTL 255 (389)
T ss_dssp CCEEEEESSHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHTTH
T ss_pred eeEEEEECcHHHHHHHHHHHHh--cCCCCCHHHHHHHHcCccHH
Confidence 68999998 999888764321 45567888888777777654
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.25 E-value=7.1e-12 Score=125.14 Aligned_cols=109 Identities=11% Similarity=0.164 Sum_probs=82.5
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|+++.+.+++|.+.| +++|+++|++||++||+||+|+...++.......+. .+.+|+++||||++|++|
T Consensus 162 ~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~-----~~~~i~~~s~sK~~g~~G 236 (391)
T 3h14_A 162 LAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALEL-----TDECYVINSFSKYFSMTG 236 (391)
T ss_dssp CSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT-----CSSSEEEEESSSTTCCTT
T ss_pred CeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhc-----CCCEEEEEechhccCCcc
Confidence 346777789999999988 999999999999999999999876665433332222 245799999999998887
Q ss_pred ---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 374 ---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
||+++++++++.+...... ++.+.+++.++++.++++
T Consensus 237 ~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~ 276 (391)
T 3h14_A 237 WRVGWMVVPEDQVRVVERIAQN--MFICAPHASQVAALAALD 276 (391)
T ss_dssp SCCEEEECCGGGHHHHHHHHHH--TTCCCCHHHHHHHHHHTT
T ss_pred ceeEEEEeCHHHHHHHHHHHhh--hccCCCHHHHHHHHHHhC
Confidence 9999999999988764433 233456666666666664
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.25 E-value=1.3e-11 Score=120.49 Aligned_cols=108 Identities=15% Similarity=0.113 Sum_probs=84.7
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHh-cCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc--
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNK-YKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM-- 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~-y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~-- 372 (430)
++++|+++++.+++|.+.|+++|.++|++ ||+++|+||+|+.|.+.. .. . .++|+++.|+||++|.+
T Consensus 83 ~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~---~~--~-----~~~d~~~~s~~K~~~~~~~ 152 (331)
T 1pff_A 83 NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTN---PL--D-----LGVDIVVHSATKYINGHTD 152 (331)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCC---GG--G-----GTCSEEEEETTTTTSSSSS
T ss_pred CCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCC---hh--h-----cCCcEEEEECccccCCCCC
Confidence 46788999999999999999999999999 999999999999876531 11 1 23589999999999865
Q ss_pred --cceeecCH-HHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 373 --GGYVAGSK-STIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 373 --GG~v~gs~-~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
+|++++++ ++++.++.....+ ++...+|..++++.++++.+
T Consensus 153 r~~G~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~ 196 (331)
T 1pff_A 153 VVAGLVCSRADIIAKVKSQGIKDI-TGAIISPHDAWLITRGTLTL 196 (331)
T ss_dssp CCCEEEEECHHHHHHHHHTCCCCC-CCCCCCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCcHHHHHHHHHHHHhh-cCCCCCHHHHHHHHcCcchH
Confidence 57999998 9999988755331 34456777766666666644
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.1e-11 Score=127.91 Aligned_cols=96 Identities=21% Similarity=0.242 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcC----ccCCCCcccCHHHHHHHHHh--cCcEEEEeccccccccCCCCCc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEG----IFSMDGSIVRLPEIVRLKNK--YKAYLYVDEAHSIGALGPTGRG 346 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~----v~sm~G~i~~L~~I~~La~~--y~~~LivDEAh~~G~lG~~GrG 346 (430)
+++|++++++. .++++|++++ +++|+|.+.|+++|+++|++ ||++|++||+|+.+++... .
T Consensus 164 ~e~l~~~l~~~-----------~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~--p 230 (427)
T 3i16_A 164 LEEIEKVLKED-----------ESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKE--P 230 (427)
T ss_dssp HHHHHHHHHTC-----------TTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSC--G
T ss_pred HHHHHHHhhCC-----------CCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCccccccCC--c
Confidence 67788887631 1477999999 99999999999999999999 9999999999987764321 1
Q ss_pred cceecCCCCCCccEEEeCccchhcc----ccceeecCHHHHHHHHh
Q psy2206 347 VTEYFGIDPREVDILMGTYTKSFGS----MGGYVAGSKSTIDYIRA 388 (430)
Q Consensus 347 ~~e~~g~~~~~~dIv~~TlSKa~G~----~GG~v~gs~~li~~l~~ 388 (430)
.. ..+||+++|+||++|. .|||+++++++++.++.
T Consensus 231 ------~~-~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~ 269 (427)
T 3i16_A 231 ------TD-VGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSY 269 (427)
T ss_dssp ------GG-GTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHH
T ss_pred ------cc-cCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHH
Confidence 11 2458999999999974 57999999999999987
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.8e-11 Score=124.36 Aligned_cols=112 Identities=18% Similarity=0.215 Sum_probs=80.5
Q ss_pred EEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-
Q psy2206 298 ILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG- 373 (430)
Q Consensus 298 ~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G- 373 (430)
.++++..+.+++|.+.+ +++|+++|++||++||+||+|+...++. ........+...+.+|+++||||+++ +|
T Consensus 193 ~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~~~~~~~g--~~~~~~~~~~~~~~~i~~~s~SK~~~-~Gl 269 (425)
T 2r2n_A 193 FLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPYYFLQFNK--FRVPTFLSMDVDGRVIRADSFSKIIS-SGL 269 (425)
T ss_dssp EEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSS--SCCCCTGGGCTTSCEEEEEESTTTTC-STT
T ss_pred EEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCcccccCCC--CCCCCccccCCCCCEEEEccchhhcc-Ccc
Confidence 33455789999999988 5599999999999999999998665642 22111122222346799999999998 88
Q ss_pred --ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 374 --GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 374 --G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
||+++++++++.+....... +.+.+++..+++.++|+.+
T Consensus 270 RiG~~~~~~~l~~~l~~~~~~~--~~~~~~~~q~a~~~~l~~~ 310 (425)
T 2r2n_A 270 RIGFLTGPKPLIERVILHIQVS--TLHPSTFNQLMISQLLHEW 310 (425)
T ss_dssp CCEEEEEEHHHHHHHHHHHHTT--TCSSCHHHHHHHHHHHHHH
T ss_pred ceEEEecCHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhc
Confidence 99999999999887643222 2345666666677777653
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5.9e-12 Score=124.97 Aligned_cols=114 Identities=16% Similarity=0.042 Sum_probs=81.1
Q ss_pred eEEEEEcCccCCCCcc---cCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCC--CCccEEEeCccchhcc
Q psy2206 297 KILIVVEGIFSMDGSI---VRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDP--REVDILMGTYTKSFGS 371 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i---~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~--~~~dIv~~TlSKa~G~ 371 (430)
+++|+++.+.+++|.+ .++++|+++|++||++||+||+|+.+.++ |........+.+ .+.+|++.||||++|+
T Consensus 165 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~ 242 (391)
T 4dq6_A 165 VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILK--KHKHIPMASISKEFEKNTITCMAPTKTFNI 242 (391)
T ss_dssp EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCT--TCCCCCGGGSCHHHHHTEEEEECSHHHHTC
T ss_pred CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccC--CCCccCHHHcCccccCcEEEEEechhhccC
Confidence 4577888889999999 56999999999999999999999875553 322222222221 1345889999999987
Q ss_pred cc---ceeecCH-HHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 372 MG---GYVAGSK-STIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 372 ~G---G~v~gs~-~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
+| ||+++++ ++++.++.....+. +.+.+++.++++.++++.
T Consensus 243 ~G~r~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~l~~ 287 (391)
T 4dq6_A 243 AGLQSSYVVLPDEKDYKLLDDAFTRID-IKRNNCFSLVATEASYNN 287 (391)
T ss_dssp GGGCCEEEECCSHHHHHHHHHHHHHTT-CCCCCHHHHHHHHHHHHH
T ss_pred cccceEEEEeCCHHHHHHHHHHHHhhc-CCCCCHHHHHHHHHHHhc
Confidence 77 9988775 88888876432222 335667777777777764
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.6e-11 Score=125.75 Aligned_cols=131 Identities=18% Similarity=0.218 Sum_probs=98.2
Q ss_pred HHHHhCCCCCCC--CCHHHHHHHHHHHhhcCCCCCCCCCce-EEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccc
Q psy2206 259 SVKQSGCALCSP--SAPSSLEAGLQKALLEGQPHSGKPWRK-ILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAH 335 (430)
Q Consensus 259 ai~~yG~g~~~s--r~~~~Le~~L~~~~~~~~p~~~~~~~~-~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh 335 (430)
.+.++|...... ..+++|+++|++ ++ ++|++|++.|++|.+.|+++|.++|++||++|++||+|
T Consensus 173 ~~~~~G~~v~~v~~~d~~~l~~ai~~-------------~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~ 239 (445)
T 1qgn_A 173 ILPKMGITATVIDPADVGALELALNQ-------------KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTF 239 (445)
T ss_dssp TGGGGTCEEEEECSSCHHHHHHHHHH-------------SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHHHcCCEEEEeCCCCHHHHHHHhcc-------------CCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCC
Confidence 445566532211 136788888875 35 78999999999999999999999999999999999999
Q ss_pred cccccCCCCCccceecCCCCCCccEEEeCccchhccc----cceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 336 SIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM----GGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 336 ~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~----GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
+.+++.. ... ..+||++.|++|.+|.. +|++++++++++.++... ..+++.++|..++.+++++
T Consensus 240 ~~~~~~~-------~~~---~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~--~~~g~~~~~~~a~~~~~~l 307 (445)
T 1qgn_A 240 ATPLNQK-------ALA---LGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLH--HILGGALNPNAAYLIIRGM 307 (445)
T ss_dssp TCTTTCC-------TTT---TTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHH--HHHCCCCCHHHHHHHHHHG
T ss_pred cccccCC-------ccc---cCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHH--HHhCCCCCHHHHHHHHHhH
Confidence 8765321 111 24689999999999864 799999999998887533 2345667888777777776
Q ss_pred HHH
Q psy2206 412 RII 414 (430)
Q Consensus 412 ~~l 414 (430)
+.+
T Consensus 308 ~~l 310 (445)
T 1qgn_A 308 KTL 310 (445)
T ss_dssp GGH
T ss_pred HHH
Confidence 654
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.2e-12 Score=126.33 Aligned_cols=112 Identities=13% Similarity=0.204 Sum_probs=80.5
Q ss_pred EEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEecccccccc-CCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 298 ILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGAL-GPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 298 ~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~l-G~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
++|++..+.+++|.+.| +++|+++|++||++||+||+|+.+.+ |.....+....+. .+.||+++||||++|++|
T Consensus 174 ~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G 251 (412)
T 2x5d_A 174 RMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGA--KDIAVEFFTLSKSYNMAG 251 (412)
T ss_dssp SEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTG--GGTEEEEEECC-CCSCTT
T ss_pred eEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCc--cCcEEEEecCccccCCcc
Confidence 45666778899999876 78999999999999999999987765 3222233322111 256899999999998887
Q ss_pred ---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 374 ---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
||+++++++++.+...... .+.+.+++.++++.++|+.
T Consensus 252 ~r~G~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~a~~~~l~~ 292 (412)
T 2x5d_A 252 WRIGFMVGNPELVSALARIKSY--HDYGTFTPLQVAAIAALEG 292 (412)
T ss_dssp SCCEEEEECHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHHS
T ss_pred cceEEEEcCHHHHHHHHHHHhh--hccCCCHHHHHHHHHHHhC
Confidence 9999999999988764322 2334566666666666653
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=9.7e-12 Score=125.61 Aligned_cols=108 Identities=16% Similarity=0.192 Sum_probs=84.5
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc---
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM--- 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~--- 372 (430)
++++|+++++.+++|.+.|+++|.++|++||++||+||+|+.+.++. .+ . .++|+++.|+||.+|.+
T Consensus 150 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~---~~--~-----~~~d~~~~S~sK~~~~~~~~ 219 (398)
T 1gc0_A 150 ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQR---PL--E-----LGADLVVHSATKYLSGHGDI 219 (398)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCC---GG--G-----GTCSEEEEETTTTTTCSSSC
T ss_pred CCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccCC---ch--h-----hCceEEEECCccccCCCCCC
Confidence 46789999999999999999999999999999999999999876532 11 1 23589999999999864
Q ss_pred -cceeecCHHHHH-HHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 373 -GGYVAGSKSTID-YIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 373 -GG~v~gs~~li~-~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
||++++++++++ .++... ..+++.+++|..+++++++++.+
T Consensus 220 ~~G~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ 262 (398)
T 1gc0_A 220 TAGIVVGSQALVDRIRLQGL-KDMTGAVLSPHDAALLMRGIKTL 262 (398)
T ss_dssp CCEEEEECHHHHHHHHHTHH-HHHTCCCCCHHHHHHHHHHHTTH
T ss_pred eEEEEEEChHHHHHHHHHHh-hccCCCCCCHHHHHHHHhccchH
Confidence 699999988776 454322 11145667888888877777654
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-11 Score=121.90 Aligned_cols=111 Identities=20% Similarity=0.252 Sum_probs=79.1
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcC--cEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYK--AYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~--~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
++++|+++++.+++|.+.|+++|+++|++|| ++||+||+|+.|.. . +++...+.||++.|+||.+|.+|
T Consensus 139 ~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~---~------~~~~~~~~di~~~s~sK~~g~~G 209 (384)
T 1eg5_A 139 DTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKI---P------FSLEKLEVDYASFSAHKFHGPKG 209 (384)
T ss_dssp TEEEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTS---C------CCCTTTCCSEEEEEGGGGTSCTT
T ss_pred CCeEEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCc---c------cCchhcCCCEEEecHHHhcCCCc
Confidence 3567888899999999999999999999999 99999999984321 1 11221246899999999999887
Q ss_pred -ceeecCHHH--HHHHHhcCC-cccccCCCcHHHHHHHHHHHHHHH
Q psy2206 374 -GYVAGSKST--IDYIRANSH-VRSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 374 -G~v~gs~~l--i~~l~~~~~-~~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
||+++++++ ...+..... ....+.+.+++.++++.++|+.+.
T Consensus 210 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~ 255 (384)
T 1eg5_A 210 VGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAV 255 (384)
T ss_dssp CEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHH
Confidence 999998875 222211100 011233566777777778887753
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-11 Score=124.05 Aligned_cols=117 Identities=18% Similarity=0.187 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++++ ++++|+++++.+++|.+.|+++|.++|++||++||+||+|+.+.+.. . ..
T Consensus 127 ~~~l~~~i~~-------------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~---~----~~ 186 (386)
T 1cs1_A 127 EQALRAALAE-------------KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQN---P----LA 186 (386)
T ss_dssp HHHHHHHHHT-------------CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC---G----GG
T ss_pred HHHHHHhhcc-------------CCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC---c----cc
Confidence 5777777753 34578899999999999999999999999999999999998765421 1 11
Q ss_pred CCCCCccEEEeCccchhcccc----ceeecCH-HHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGSMG----GYVAGSK-STIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G----G~v~gs~-~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.++||++.|+||+++.+| |++++++ ++++.++..... ++...+|..+++++++++.+
T Consensus 187 ---~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~l~~~ 248 (386)
T 1cs1_A 187 ---LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANN--IGVTGGAFDSYLLLRGLRTL 248 (386)
T ss_dssp ---GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHH--HTCBCCHHHHHHHHHHHTTH
T ss_pred ---cCceEEEEcCcccccCCCCceeEEEEeCcHHHHHHHHHHHHh--cCCCCCHHHHHHHHhcccHH
Confidence 245899999999998654 8888875 888888764322 34556777777766666543
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-11 Score=123.68 Aligned_cols=126 Identities=16% Similarity=0.134 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCC---CCCc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGP---TGRG 346 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~---~GrG 346 (430)
+++|++.+++. +.++++|++..+.+++|.+.+ +++|+++|++||++||+||+|+...++. .+.+
T Consensus 170 ~~~l~~~l~~~----------~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~ 239 (409)
T 4eu1_A 170 LAGMLECLDKA----------PEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFV 239 (409)
T ss_dssp HHHHHHHHHHS----------CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHH
T ss_pred HHHHHHHHHhC----------CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHH
Confidence 68888888752 124677888999999999988 6669999999999999999998765543 1223
Q ss_pred cceecCCCCCCccEEEeCccchhcccc---ce---eecCHH----HHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 347 VTEYFGIDPREVDILMGTYTKSFGSMG---GY---VAGSKS----TIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 347 ~~e~~g~~~~~~dIv~~TlSKa~G~~G---G~---v~gs~~----li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
+....+.. +..|+++||||+||++| || ++++++ +++.++...+. ...+.+++.++++.++|+
T Consensus 240 ~~~~~~~~--~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~l~ 311 (409)
T 4eu1_A 240 PRHLVDMV--PNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIRP--MYNNPPLYGAWVVSSILK 311 (409)
T ss_dssp HHHHHTTS--SCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHH--HHSSCCHHHHHHHHHHHH
T ss_pred HHHHHhhC--CcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHhh--hcCCCChHHHHHHHHHhC
Confidence 33332332 34689999999999999 99 477888 66666543322 122344555555555554
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=5.8e-12 Score=127.10 Aligned_cols=110 Identities=15% Similarity=0.137 Sum_probs=81.9
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
++++|+++.+.+++|.+.| +++|+++|++||++||+||+|+.+.++....++ ..++ .+.||+++||||++|++
T Consensus 174 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~--~~~~--~~~~i~~~s~sK~~g~~ 249 (409)
T 2gb3_A 174 RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASA--LSIE--SDKVVVIDSVSKKFSAC 249 (409)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCG--GGSC--CTTEEEEEESTTTTTCG
T ss_pred CCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCc--cccC--CCCEEEEecchhccCCc
Confidence 3567788899999999864 999999999999999999999876654322222 1122 24589999999999877
Q ss_pred c---ceeecCH-HHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 373 G---GYVAGSK-STIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 373 G---G~v~gs~-~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
| ||+++++ ++++.++.....+ + +.+++.++++.++|+
T Consensus 250 G~r~G~~~~~~~~l~~~l~~~~~~~--~-~~~~~~~~a~~~~l~ 290 (409)
T 2gb3_A 250 GARVGCLITRNEELISHAMKLAQGR--L-APPLLEQIGSVGLLN 290 (409)
T ss_dssp GGCCEEEECSCHHHHHHHHHHHHHS--C-CCCHHHHHHHHHHHT
T ss_pred cceEEEEEECcHHHHHHHHHHHhcc--C-CCCHHHHHHHHHHHh
Confidence 7 9999988 9998887643322 2 566666666666664
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.9e-11 Score=122.86 Aligned_cols=108 Identities=11% Similarity=0.122 Sum_probs=86.0
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHh-cCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc--
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNK-YKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM-- 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~-y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~-- 372 (430)
++++|+++++.+++|.+.|+++|+++|++ ||++||+||+|+.+++.. . . . .++||++.|+||+|+++
T Consensus 147 ~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~~---~-~-~-----~~~di~~~S~sK~~~~~g~ 216 (404)
T 1e5e_A 147 NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMITN---P-V-D-----FGVDVVVHSATKYINGHTD 216 (404)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTCC---G-G-G-----GTCSEEEEETTTTTTCSSC
T ss_pred CCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhCC---c-c-c-----cCCEEEEEcCccccCCCCC
Confidence 46789999999999999999999999999 999999999998776431 1 1 1 14689999999999876
Q ss_pred --cceeecCHHHHH-HHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 373 --GGYVAGSKSTID-YIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 373 --GG~v~gs~~li~-~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
|||+++++++++ .++..... .++..++|..+++++++++.+
T Consensus 217 ri~G~~~~~~~~~~~~l~~~~~~-~~g~~~~~~~~~~~~~~l~~~ 260 (404)
T 1e5e_A 217 VVAGLICGKADLLQQIRMVGIKD-ITGSVISPHDAWLITRGLSTL 260 (404)
T ss_dssp CCCEEEEECHHHHHHHHHTCCCC-CCCCCCCHHHHHHHHHHHTTH
T ss_pred CeEEEEEECHHHHHHHHHHHHHh-CCCCCCCHHHHHHHHHhHhHH
Confidence 599999999998 87764432 224567888777777777643
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-11 Score=125.50 Aligned_cols=128 Identities=14% Similarity=0.156 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEE-EEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILI-VVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lI-i~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~ 348 (430)
+++|+++|+.....+ .++++| ++..+.+++|.+.+ +++|+++|++||++||+||+|+.+.++. ....
T Consensus 200 ~~~L~~~l~~~~~~~-------~~~k~v~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g--~~~~ 270 (448)
T 3aow_A 200 VEILEEKLKELKSQG-------KKVKVVYTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSG--NPEK 270 (448)
T ss_dssp HHHHHHHHHHHHHTT-------CCEEEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSS--CCCC
T ss_pred HHHHHHHHhhhhccC-------CCCeEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCC--CCCc
Confidence 678888886210000 134555 67888999999887 6799999999999999999998776642 2221
Q ss_pred eecCCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 349 EYFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 349 e~~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
....+...+.+|+++||||++| +| ||+++++++++.+....... +.+.+++.++++.++|+
T Consensus 271 ~~~~~~~~~~vi~~~S~SK~~~-~GlriG~v~~~~~l~~~l~~~~~~~--~~~~~~~~q~a~~~~L~ 334 (448)
T 3aow_A 271 KIKALDNEGRVIYLGTFSKILA-PGFRIGWMVGDPGIIRKMEIAKQST--DLCTNVFGQVVAWRYVD 334 (448)
T ss_dssp CTGGGCTTSCEEEEEESTTTTC-GGGCCEEEEECHHHHHHHHHHHHHH--HSSCCHHHHHHHHHHHH
T ss_pred CHHhcCCCCCEEEEccchhhcc-ccccEEEEEeCHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHH
Confidence 2222222356899999999998 77 99999999999887644332 22346666666666665
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=2.2e-11 Score=120.61 Aligned_cols=109 Identities=15% Similarity=0.073 Sum_probs=82.3
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+.| +++|+++|++||++||+||+|+.+.++ +....+..+. .+.+|++.||||++|++|
T Consensus 147 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~~--~~~~i~~~s~sK~~~~~G 222 (364)
T 1lc5_A 147 LDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPH--ETGFIPALKD--NPHIWVLRSLTKFYAIPG 222 (364)
T ss_dssp CCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTT--CCCSGGGCTT--CTTEEEEEESTTTTTCTT
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccC--ccchhhHhcc--CCCEEEEEECchhhcCCc
Confidence 345666677999999998 999999999999999999999866553 3343333332 245899999999998777
Q ss_pred ---ceee-cCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 374 ---GYVA-GSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 374 ---G~v~-gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
||++ +++++++.++....+ .+.+++.++++.++|+.
T Consensus 223 ~r~G~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~l~~ 262 (364)
T 1lc5_A 223 LRLGYLVNSDDAAMARMRRQQMP----WSVNALAALAGEVALQD 262 (364)
T ss_dssp TCCEEEECCCHHHHHHHHHHSCT----TCSCHHHHHHHHHGGGC
T ss_pred cceEEEEECCHHHHHHHHHhCCC----CCCCHHHHHHHHHHHhC
Confidence 9999 999999988875432 24567777666666643
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-11 Score=126.49 Aligned_cols=136 Identities=14% Similarity=0.174 Sum_probs=98.5
Q ss_pred HHHHHH-HHHhCCCCCCC--CCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEE
Q psy2206 254 ERSKES-VKQSGCALCSP--SAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLY 330 (430)
Q Consensus 254 ~a~~~a-i~~yG~g~~~s--r~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~Li 330 (430)
..+... +.++|....-. ..+++|++++++ ++++|++|++.+++|.+.|+++|+++|++||++||
T Consensus 120 ~~~~~~~~~~~g~~~~~v~~~d~~~l~~~i~~-------------~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~li 186 (400)
T 3nmy_A 120 RLFERVRRRTAGLDFSFVDLTDPAAFKAAIRA-------------DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTV 186 (400)
T ss_dssp HHHHHTHHHHHCCEEEEECTTSHHHHHHHCCT-------------TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEE
T ss_pred HHHHHhhHhhcCeEEEEECCCCHHHHHHHhcc-------------CCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEE
Confidence 344444 55666532211 125666666542 46789999999999999999999999999999999
Q ss_pred EeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----ccc--eeecCHHHHHHHHhcCCcccccCCCcHHHH
Q psy2206 331 VDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS----MGG--YVAGSKSTIDYIRANSHVRSYATSMPPPVA 404 (430)
Q Consensus 331 vDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~----~GG--~v~gs~~li~~l~~~~~~~~~s~s~~P~~~ 404 (430)
+||+|+.+++.. ... ..+||++.|++|+++. .|| ++..++++++.++.... .++..++|..+
T Consensus 187 vDe~~~~~~~~~-------~~~---~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~--~~g~~~~~~~a 254 (400)
T 3nmy_A 187 VDNTFASPMLQR-------PLS---LGADLVVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQN--SIGGVQGPFDS 254 (400)
T ss_dssp EECTTTHHHHCC-------GGG---GTCSEEEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHH--HHCCBCCHHHH
T ss_pred EECCCcccccCC-------hhh---cCCcEEEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHH--hcCCCCCHHHH
Confidence 999998765431 111 1358999999999984 457 56668889888876432 34667889888
Q ss_pred HHHHHHHHHH
Q psy2206 405 MQILTSMRII 414 (430)
Q Consensus 405 aaalaaL~~l 414 (430)
+++++.++.+
T Consensus 255 ~~~l~~l~~l 264 (400)
T 3nmy_A 255 FLALRGLKTL 264 (400)
T ss_dssp HHHHHHHTTH
T ss_pred HHHHHhHhHH
Confidence 8888877665
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-11 Score=121.70 Aligned_cols=121 Identities=10% Similarity=0.026 Sum_probs=85.3
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhc-ccc-
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG-SMG- 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G-~~G- 373 (430)
++++|+++++.+++|.+.|+++|+++|++||++||+||+|+.+... .. .+.+ .+|+++.|+||+++ .+|
T Consensus 144 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~---~~-~~~~-----~~d~~~~s~~K~l~~~~G~ 214 (376)
T 3f0h_A 144 NFTGLLVNVDETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADP---FN-MNEC-----GADVMITGSQKVLACPPGI 214 (376)
T ss_dssp CCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSC---CC-HHHH-----TCSEEEEETTTTTCCCSSC
T ss_pred CceEEEEecccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCcc---cc-cccc-----CccEEEecCcccccCCCce
Confidence 3567888899999999999999999999999999999999865321 00 1122 35899999999998 555
Q ss_pred ceeecCHHHHHHHHhcCC-cc--------------cccCCCcHHHHHHHHHHHHHHHccCCchHHHh
Q psy2206 374 GYVAGSKSTIDYIRANSH-VR--------------SYATSMPPPVAMQILTSMRIIMGLENGDEGNV 425 (430)
Q Consensus 374 G~v~gs~~li~~l~~~~~-~~--------------~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~ 425 (430)
|++++++++++.+..... ++ ....+++...++++.++++.+.++.+.++.++
T Consensus 215 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~ 281 (376)
T 3f0h_A 215 SVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVA 281 (376)
T ss_dssp EEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred EEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 789999999998875321 11 01223444455667778887765533333333
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.2e-11 Score=122.01 Aligned_cols=126 Identities=14% Similarity=0.022 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCcc--
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-- 347 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-- 347 (430)
+++|+++++.. ++++|++..+.+++|.+.+ +++|+++|++||++||+||+|+.+.++. ...+
T Consensus 171 ~~~l~~~l~~~------------~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~-~~~~~~ 237 (437)
T 3g0t_A 171 REKLESYLQTG------------QFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRK-DYSHPG 237 (437)
T ss_dssp HHHHHHHHTTT------------CCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTS-CCCSTT
T ss_pred HHHHHHHHhcC------------CceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCC-CcCccc
Confidence 56677766321 2445666677999999987 7888999999999999999998766651 1111
Q ss_pred -----ceecCCCCCCccEEEeCccchhcccc---ceeecCHHHHH-H-----------------HHhcCCcccccCCCcH
Q psy2206 348 -----TEYFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTID-Y-----------------IRANSHVRSYATSMPP 401 (430)
Q Consensus 348 -----~e~~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~-~-----------------l~~~~~~~~~s~s~~P 401 (430)
....+. .+.+|+++||||++|++| ||+++++++++ . +...... .+.+.++
T Consensus 238 ~~~~~~~~~~~--~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 313 (437)
T 3g0t_A 238 EPLYQPSVANY--TDNYILALSSSKAFSYAGQRIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYA--LSSGATH 313 (437)
T ss_dssp SSCCCCCGGGT--CSCEEEEEESTTTTSCGGGCCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHH--HHSSSCH
T ss_pred ccchhhccCCC--CCcEEEEEcCccCCCCccceeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhh--hcCCCCH
Confidence 111111 345799999999999887 99999999988 6 5442211 2345677
Q ss_pred HHHHHHHHHHHHHH
Q psy2206 402 PVAMQILTSMRIIM 415 (430)
Q Consensus 402 ~~~aaalaaL~~l~ 415 (430)
+.++++.++|+...
T Consensus 314 ~~~~a~~~~l~~~~ 327 (437)
T 3g0t_A 314 SAQWGMAAMLKACN 327 (437)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcH
Confidence 77777788887654
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.22 E-value=5.5e-11 Score=117.47 Aligned_cols=123 Identities=17% Similarity=0.226 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhc--CcEEEEeccccccccCCCCCcccee
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKY--KAYLYVDEAHSIGALGPTGRGVTEY 350 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y--~~~LivDEAh~~G~lG~~GrG~~e~ 350 (430)
+++|+++|++. ++++|+++.+.+++|.+.|+++|+++|++| |++||+||+|+.|...
T Consensus 126 ~~~l~~~l~~~------------~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~--------- 184 (385)
T 2bkw_A 126 LELITEKLSQN------------SYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEE--------- 184 (385)
T ss_dssp HHHHHHHHHHS------------CCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSC---------
T ss_pred HHHHHHHHhcC------------CCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEECccccCCcc---------
Confidence 67888888651 244788899999999999999999999999 9999999999855321
Q ss_pred cCCCCCCccEEEeCccchhc-ccc-ceeecCHHHHH-HHHh----------------------c-CCcccccCCCcHHHH
Q psy2206 351 FGIDPREVDILMGTYTKSFG-SMG-GYVAGSKSTID-YIRA----------------------N-SHVRSYATSMPPPVA 404 (430)
Q Consensus 351 ~g~~~~~~dIv~~TlSKa~G-~~G-G~v~gs~~li~-~l~~----------------------~-~~~~~~s~s~~P~~~ 404 (430)
+++....+|+++.|+||+++ .+| |++++++++++ .++. . .....+..+.++..+
T Consensus 185 ~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (385)
T 2bkw_A 185 FEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLI 264 (385)
T ss_dssp CCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHH
T ss_pred ccccccCceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHH
Confidence 11221246899999999775 566 89999998877 4320 0 000011234666677
Q ss_pred HHHHHHHHHHHc
Q psy2206 405 MQILTSMRIIMG 416 (430)
Q Consensus 405 aaalaaL~~l~~ 416 (430)
+++.++++.+.+
T Consensus 265 ~a~~~al~~~~~ 276 (385)
T 2bkw_A 265 NSLDVALKEILE 276 (385)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777778887643
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.22 E-value=2.2e-11 Score=123.87 Aligned_cols=107 Identities=15% Similarity=0.107 Sum_probs=84.4
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcC-cEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc--
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYK-AYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM-- 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~-~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~-- 372 (430)
++++|++|++.|++|.+.|+++|+++|++|| ++||+||+|+.+.++. . +. .++||++.|+||.+|.+
T Consensus 151 ~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~---~------~~-~~~div~~S~sK~~~g~~~ 220 (403)
T 3cog_A 151 ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQR---P------LA-LGADISMYSATKYMNGHSD 220 (403)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCC---T------TT-TTCSEEEEETTTTTTCSSC
T ss_pred CCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCC---c------cc-cCCeEEEEcChhhccCCCC
Confidence 4678999999999999999999999999999 9999999998765421 1 11 24699999999999864
Q ss_pred --cceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 373 --GGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 373 --GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
+|++++ ++++++.++..... ++..++|..+++++++++.+
T Consensus 221 ~~~G~v~~~~~~l~~~l~~~~~~--~g~~~~~~~~~~~~~~l~~l 263 (403)
T 3cog_A 221 VVMGLVSVNCESLHNRLRFLQNS--LGAVPSPIDCYLCNRGLKTL 263 (403)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHTTH
T ss_pred CeEEEEEECcHHHHHHHHHHHHh--cCCCCCHHHHHHHHhhhhHH
Confidence 489888 58888888764322 45567888887777777654
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.5e-11 Score=122.82 Aligned_cols=117 Identities=19% Similarity=0.172 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|+++|++ ++++|++|++.+++|.+.|+++|+++|++||++||+||+|+.++... ..+
T Consensus 141 ~~~l~~~i~~-------------~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~~~-------~~~ 200 (392)
T 3qhx_A 141 LDAVRAAIRP-------------TTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPALQQ-------PLS 200 (392)
T ss_dssp HHHHHHHCCT-------------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCC-------GGG
T ss_pred HHHHHHhhCC-------------CCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCcccccCC-------hHH
Confidence 5666666542 47789999999999999999999999999999999999998664321 112
Q ss_pred CCCCCccEEEeCccchhccc----cceeecC-HHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGSM----GGYVAGS-KSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~----GG~v~gs-~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
..+||++.|+||.+|.. ||+++++ +++++.++.... .++..++|..++++++.++.+
T Consensus 201 ---~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~--~~g~~~~~~~~~~~~~~l~~l 262 (392)
T 3qhx_A 201 ---LGADVVLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQN--GAGAVPGPFDAYLTMRGLKTL 262 (392)
T ss_dssp ---GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHH--HHCCCCCHHHHHHHHHHHTTH
T ss_pred ---hCCcEEEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHH--hcCCCCCHHHHHHHHhhhhHH
Confidence 24589999999999864 6888887 688887776432 245667888888887777654
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-11 Score=119.18 Aligned_cols=123 Identities=15% Similarity=0.238 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+++. ++++|+++++.+++|.+.|+++|+++|++||++||+||+|+.|.. ...+ ..+
T Consensus 113 ~~~l~~~l~~~------------~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~---~~~~-~~~- 175 (353)
T 2yrr_A 113 PEAVARALKRR------------RYRMVALVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGML---PFSM-RAM- 175 (353)
T ss_dssp HHHHHHHHHHS------------CCSEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTS---CCCH-HHH-
T ss_pred HHHHHHHHHhC------------CCCEEEEEccCCCcceecCHHHHHHHHHHcCCeEEEEcCcccccc---cccc-ccc-
Confidence 67888887651 234778899999999999999999999999999999999975432 1111 111
Q ss_pred CCCCCccEEEeCccchh-cccc-ceeecCHHHHHHHHh-c------------CCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 353 IDPREVDILMGTYTKSF-GSMG-GYVAGSKSTIDYIRA-N------------SHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~-G~~G-G~v~gs~~li~~l~~-~------------~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
++|+++.|++|++ |.+| ||+++++++++.++. . .....+..+.++..++++.++++.+.+
T Consensus 176 ----~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 250 (353)
T 2yrr_A 176 ----GVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLE 250 (353)
T ss_dssp ----TCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHHHH
T ss_pred ----CceEEEecCcccccCCCceEEEEECHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3489999999976 4456 899999999877641 0 001123345666666767778887644
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=4.6e-11 Score=119.53 Aligned_cols=110 Identities=22% Similarity=0.221 Sum_probs=79.6
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+.+ +++|+++|++||++||+||+|+...++. .......+.+ +.+|+++||||++|++|
T Consensus 165 ~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~---~~~~~~~~~~-~~~i~~~s~SK~~~~~G 240 (385)
T 1b5p_A 165 TKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG---EHFSPGRVAP-EHTLTVNGAAKAFAMTG 240 (385)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS---CCCCGGGTCT-TTEEEEEESTTTTTCGG
T ss_pred CEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC---CCCCHHHcCC-CCEEEEEechhhcCCcc
Confidence 456667788999999876 9999999999999999999998766542 1111122222 56899999999999888
Q ss_pred ---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 374 ---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
||+++++++++.++..... .+...+++..+++.++|+
T Consensus 241 ~RiG~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~a~~~~l~ 280 (385)
T 1b5p_A 241 WRIGYACGPKEVIKAMASVSRQ--STTSPDTIAQWATLEALT 280 (385)
T ss_dssp GCCEEEECCHHHHHHHHHHHHT--TTCSCCHHHHHHHHHHHH
T ss_pred cceEEEEeCHHHHHHHHHHHhh--ccCCCCHHHHHHHHHHHh
Confidence 9999999999888764322 122345555555556664
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.6e-11 Score=118.58 Aligned_cols=131 Identities=17% Similarity=0.195 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccce
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE 349 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e 349 (430)
+++|+++|++. ++++|++..+.+++|.+.| +++|+++|++||++|++||+|+ |.. ... .+
T Consensus 124 ~~~l~~~i~~~------------~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g~~---~~~-~~ 186 (379)
T 3ke3_A 124 IETAVAKIKED------------KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-GCV---WLD-MK 186 (379)
T ss_dssp HHHHHHHHHHH------------TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-TTC---CCC-HH
T ss_pred HHHHHHHHhhc------------CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-CCc---ccc-cc
Confidence 67888888642 2346777888888999999 9999999999999999999986 521 000 12
Q ss_pred ecCCCCCCccEEEeCccchhccc-c-ceeecCHHHHHHHHhc-CCccc-------------------ccCCCcHHHHHHH
Q psy2206 350 YFGIDPREVDILMGTYTKSFGSM-G-GYVAGSKSTIDYIRAN-SHVRS-------------------YATSMPPPVAMQI 407 (430)
Q Consensus 350 ~~g~~~~~~dIv~~TlSKa~G~~-G-G~v~gs~~li~~l~~~-~~~~~-------------------~s~s~~P~~~aaa 407 (430)
.+ ++|+++.|++|+++.+ | |++++++++++.+... ..++. |+.++++..++++
T Consensus 187 ~~-----~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~ 261 (379)
T 3ke3_A 187 EL-----GIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQF 261 (379)
T ss_dssp HH-----TCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHH
T ss_pred cc-----CCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHH
Confidence 22 4589999999999754 4 8999999999988752 22221 2236778888888
Q ss_pred HHHHHHHHccCCchHHHhh
Q psy2206 408 LTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 408 laaL~~l~~~~~~~~~~~r 426 (430)
.++|+.++++ +.++..++
T Consensus 262 ~aal~~~~~~-g~~~~~~~ 279 (379)
T 3ke3_A 262 RDAILEAKEI-GFDILRDA 279 (379)
T ss_dssp HHHHHHHHHH-CHHHHHHH
T ss_pred HHHHHHHHHh-cHHHHHHH
Confidence 8999988755 33444443
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.2e-11 Score=120.26 Aligned_cols=111 Identities=15% Similarity=0.116 Sum_probs=82.6
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHH--hcCcEEEEecccccccc--C-CCCCccceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKN--KYKAYLYVDEAHSIGAL--G-PTGRGVTEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~--~y~~~LivDEAh~~G~l--G-~~GrG~~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++|+++.+.+++|.+.|++++.++++ ++|++||+||+|+.+.+ . ....+.....+. .+.+|+++||||++|
T Consensus 153 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~~ 230 (365)
T 3get_A 153 EIKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKE--FDNVLYLGTFSKLYG 230 (365)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHH--CTTEEEEEESSSTTS
T ss_pred CCCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhcc--CCCEEEEeecchHhc
Confidence 4667788899999999999888888887 77999999999986653 2 111222222221 245799999999999
Q ss_pred ccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 371 SMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 371 ~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
++| ||+++++++++.++..... + +.+++.++++.++|+
T Consensus 231 ~~G~r~G~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~l~ 271 (365)
T 3get_A 231 LGGLRIGYGIANANIISAFYKLRAP--F--NVSNLALKAAVAAMD 271 (365)
T ss_dssp CTTTCCEEEEECHHHHHHHHHHSCT--T--CSCHHHHHHHHHHHT
T ss_pred CcchheEEEEcCHHHHHHHHHhcCC--C--CcCHHHHHHHHHHhC
Confidence 887 9999999999999875543 2 366777766677665
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=7.1e-11 Score=119.64 Aligned_cols=128 Identities=11% Similarity=0.151 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCC-ccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR-GVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr-G~~ 348 (430)
+++|++++++.... ..++++|+++.+.+++|.+.| +++|+++|++||++||+||+|+.+.++..+. .+.
T Consensus 172 ~~~l~~~l~~~~~~-------~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~ 244 (428)
T 1iay_A 172 SKAVKEAYENAQKS-------NIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIA 244 (428)
T ss_dssp HHHHHHHHHHHHHT-------TCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHH
T ss_pred HHHHHHHHHHHHhc-------CCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHH
Confidence 67788777653211 113567777888999999999 9999999999999999999998765542211 111
Q ss_pred eec------CCCCCCccEEEeCccchhcccc---ceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 349 EYF------GIDPREVDILMGTYTKSFGSMG---GYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 349 e~~------g~~~~~~dIv~~TlSKa~G~~G---G~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
... ++.+ +..|++.||||+||++| ||+++ ++++++.++..... + ..+++.++++.++|+
T Consensus 245 ~~~~~~~~~~~~~-d~viv~~s~sK~~g~~Glr~G~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~a~~~~l~ 313 (428)
T 1iay_A 245 EILDEQEMTYCNK-DLVHIVYSLSKDMGLPGFRVGIIYSFNDDVVNCARKMSSF--G--LVSTQTQYFLAAMLS 313 (428)
T ss_dssp HHHTSGGGTTSCT-TSEEEEEESTTTSSCGGGCEEEEEESCHHHHHHHHHHHTT--S--CCCHHHHHHHHHHTT
T ss_pred HhccccccccCCC-CcEEEEecchhhcCCCCceEEEEEeCCHHHHHHHHHHHhc--c--cCCHHHHHHHHHHhc
Confidence 111 1111 22388999999999887 99988 78899888764322 2 245555555555554
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=9.9e-12 Score=125.13 Aligned_cols=116 Identities=15% Similarity=0.114 Sum_probs=75.7
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCC-C-ccceecCCCCCCccEEEeCccchhcc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTG-R-GVTEYFGIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~G-r-G~~e~~g~~~~~~dIv~~TlSKa~G~ 371 (430)
+++|++..+.+++|.+.| +++|+++|++||++||+||+|+...++... . .......+.....+|+++||||+|++
T Consensus 178 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 257 (416)
T 1bw0_A 178 TKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVV 257 (416)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSC
T ss_pred CeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCC
Confidence 445666667999999998 999999999999999999999875553220 0 22222222222346889999999987
Q ss_pred cc---ceeecCHH--HHHHHHhcCCcc-cccCCCcHHHHHHHHHHHH
Q psy2206 372 MG---GYVAGSKS--TIDYIRANSHVR-SYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 372 ~G---G~v~gs~~--li~~l~~~~~~~-~~s~s~~P~~~aaalaaL~ 412 (430)
+| ||++++++ +++.+......+ ..+.+.+++.++++.++|+
T Consensus 258 ~Glr~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~ 304 (416)
T 1bw0_A 258 PGWRLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALL 304 (416)
T ss_dssp GGGCCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHH
T ss_pred CCceEEEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHh
Confidence 76 89887653 444333111001 1233466777777777776
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.18 E-value=6.7e-11 Score=118.08 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEE-cCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVV-EGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~-E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
+++|++++.+. ++++|++ ++.+ |...++++|+++|++||++||+||+|+.|.++. +... .
T Consensus 152 ~~~l~~~i~~~------------~~~~v~~~~~~~---~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~---~~~~-~ 212 (405)
T 2vi8_A 152 YDDVREKARLH------------RPKLIVAAAAAY---PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAA---GLHP-N 212 (405)
T ss_dssp HHHHHHHHHHH------------CCSEEEECCSSC---CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHT---TSSC-C
T ss_pred HHHHHHHHHhc------------CCeEEEEeCCCC---CccCCHHHHHHHHHHcCCEEEEEcccccccccc---CcCC-C
Confidence 68888888652 1224444 4444 556689999999999999999999999776532 2211 2
Q ss_pred CCCCCCccEEEeCccchhc-cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 352 GIDPREVDILMGTYTKSFG-SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G-~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
++ ...||++.||||+++ ..|||+++++++++.++.....+.+ ++.++.+++++.++++.+..
T Consensus 213 ~~--~~~di~~~s~sK~~~g~~gG~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~aa~~~al~~~~~ 275 (405)
T 2vi8_A 213 PV--PYAHFVTTTTHKTLRGPRGGMILCQEQFAKQIDKAIFPGIQ-GGPLMHVIAAKAVAFGEALQ 275 (405)
T ss_dssp ST--TTCSEEEEESSSTTCCCSCEEEEECHHHHHHHHHHHTTTTC-SSCCHHHHHHHHHHHHHHHS
T ss_pred cc--ccCCEEEEeccccCCCCCCeEEEEcHHHHHHHHhhhccccc-CCCCHHHHHHHHHHHHHHHh
Confidence 22 246899999999997 8899999999999888764434333 33566777777778877654
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.17 E-value=7.7e-11 Score=117.72 Aligned_cols=84 Identities=17% Similarity=0.209 Sum_probs=64.8
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHh------cCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCcc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNK------YKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYT 366 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~------y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlS 366 (430)
++++|++..+.+++|.+.| +.+|+++|++ ||++||+||+|+...++ |......... .+.+|+++|||
T Consensus 172 ~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~~--~~~~i~~~s~s 247 (398)
T 3ele_A 172 HTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYD--GIKVPFVTKY--YDNTLVCYSYS 247 (398)
T ss_dssp TEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCT--TCCCCCGGGT--CSSEEEEEEST
T ss_pred CCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccC--CCCcCChHhh--cCCeEEEEehh
Confidence 4677888899999999998 7778899999 99999999999876553 2222211122 24579999999
Q ss_pred chhcccc---ceeecCHHHH
Q psy2206 367 KSFGSMG---GYVAGSKSTI 383 (430)
Q Consensus 367 Ka~G~~G---G~v~gs~~li 383 (430)
|++|++| ||++++++++
T Consensus 248 K~~~~~G~r~G~~~~~~~~~ 267 (398)
T 3ele_A 248 KSLSLPGERIGYVLVPDEVY 267 (398)
T ss_dssp TTSSCTTTCCEEEECCTTST
T ss_pred hcCCCccceeEEEEEcchhh
Confidence 9999888 9999988744
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.17 E-value=2.8e-11 Score=122.63 Aligned_cols=107 Identities=16% Similarity=0.156 Sum_probs=83.7
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhc----CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKY----KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y----~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~ 371 (430)
++++|+++++.+++|.+.|+++|.++|++| |++|++||+|+.+.+.. .. .+ .+||++.|+||.+|.
T Consensus 138 ~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~~----~~-~~-----~~di~~~S~sK~~g~ 207 (393)
T 1n8p_A 138 NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYISN----PL-NF-----GADIVVHSATKYING 207 (393)
T ss_dssp SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHCC----GG-GG-----TCSEEEEETTTTTTC
T ss_pred CceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccCC----HH-Hc-----CCeEEEEECcccccC
Confidence 477899999999999999999999999999 99999999998776531 11 11 358999999999997
Q ss_pred cc----ceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MG----GYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~G----G~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.| |++++ ++++++.++..... ++..++|..++++.++++.+
T Consensus 208 ~G~rigG~~~~~~~~~~~~l~~~~~~--~g~~~~~~~~~~~~~~l~~~ 253 (393)
T 1n8p_A 208 HSDVVLGVLATNNKPLYERLQFLQNA--IGAIPSPFDAWLTHRGLKTL 253 (393)
T ss_dssp SSCCCCEEEEESCHHHHHHHHHHHHH--HCCCCCHHHHHHHHHHHTTH
T ss_pred CCCceeEEEEeCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHhccchH
Confidence 65 99988 48898888764322 34556777777666666544
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=6.4e-11 Score=118.61 Aligned_cols=97 Identities=18% Similarity=0.309 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEE-cCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVV-EGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~-E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
+++|++++++. ++++|++ ++.+ |.+.|+++|+++|++||++||+||+|+.|+++. |. +.
T Consensus 158 ~~~l~~~i~~~------------~~~~v~~~~~~~---~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~-~~----~~ 217 (420)
T 3gbx_A 158 YDEMAKLAKEH------------KPKMIIGGFSAY---SGVVDWAKMREIADSIGAYLFVDMAHVAGLIAA-GV----YP 217 (420)
T ss_dssp HHHHHHHHHHH------------CCSEEEECCTTC---CSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHT-TS----SC
T ss_pred HHHHHHHHHhc------------CCeEEEEecCcc---CCccCHHHHHHHHHHcCCEEEEECCcchhceec-cc----CC
Confidence 78899888763 1235555 4443 567899999999999999999999998876532 11 11
Q ss_pred CCCCCCccEEEeCccchh-ccccceeecCH---HHHHHHHhcC
Q psy2206 352 GIDPREVDILMGTYTKSF-GSMGGYVAGSK---STIDYIRANS 390 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~-G~~GG~v~gs~---~li~~l~~~~ 390 (430)
... ..+||+++|+||++ |..|||+++++ ++++.+....
T Consensus 218 ~~~-~~~di~~~s~sK~~~g~~gg~~~~~~~~~~~~~~~~~~~ 259 (420)
T 3gbx_A 218 NPV-PHAHVVTTTTHKTLAGPRGGLILAKGGDEELYKKLNSAV 259 (420)
T ss_dssp CST-TTSSEEEEESSGGGCSCSCEEEEESSCCHHHHHHHHHHH
T ss_pred ccc-ccCCEEEeecccCCCCCCceEEEEcCCcHHHHHHhhhhc
Confidence 111 24689999999999 56789999987 8888777643
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.9e-11 Score=124.58 Aligned_cols=114 Identities=18% Similarity=0.113 Sum_probs=79.6
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|+++.+.+++|.+.+ |++|+++|++||++||+||+|+.++++..+......+... .+++|+++||||++|++|
T Consensus 210 ~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~g~~G 288 (449)
T 3qgu_A 210 TDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGA-DEVAIETCSFSKYAGFTG 288 (449)
T ss_dssp CSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTG-GGTEEEEEECSGGGTCTT
T ss_pred CCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCC-CCcEEEEecchhhcCCcc
Confidence 446666689999999886 8889999999999999999998766553333222222211 356899999999999888
Q ss_pred ---ceeecCHHHHH--------HHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 374 ---GYVAGSKSTID--------YIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 374 ---G~v~gs~~li~--------~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
||+++++++++ .+.... ...++ +.+++.++++.++++.
T Consensus 289 ~r~G~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~a~~~~l~~ 337 (449)
T 3qgu_A 289 VRLGWTVVPKALKYANGEPVHADWNRVM-TTCFN-GASNIVQAGGLACLQP 337 (449)
T ss_dssp CCCEEEECCTTCBCTTSCBHHHHHHHHH-HHSCC-CCCHHHHHHHHHHTSH
T ss_pred ceeEEEecCHHHHhhhhhhHHHHHHHHh-hcccC-CCCHHHHHHHHHHHhh
Confidence 99999998875 232211 22222 3556666666666653
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-11 Score=124.80 Aligned_cols=136 Identities=18% Similarity=0.169 Sum_probs=95.6
Q ss_pred HHHHHHHHHhCCCCCCC--CCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEE
Q psy2206 254 ERSKESVKQSGCALCSP--SAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYV 331 (430)
Q Consensus 254 ~a~~~ai~~yG~g~~~s--r~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~Liv 331 (430)
..+...+.++|....-. ..+++|++++++ ++++|++|++.+++|.+.|+++|+++|++||++||+
T Consensus 135 ~~~~~~~~~~g~~~~~v~~~d~~~l~~ai~~-------------~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~liv 201 (414)
T 3ndn_A 135 VVCSEILPRWGVQTVFVDGDDLSQWERALSV-------------PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVL 201 (414)
T ss_dssp HHHHTHHHHTTCEEEEECTTCHHHHHHHTSS-------------CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHcCcEEEEeCCCCHHHHHHhcCC-------------CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEE
Confidence 44444455666532211 125666666532 355888899999999999999999999999999999
Q ss_pred eccccccccCCCCCccceecCCCCCCccEEEeCccchhccc----cceeecCHHHHH-HHHhcCCcccccCCCcHHHHHH
Q psy2206 332 DEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM----GGYVAGSKSTID-YIRANSHVRSYATSMPPPVAMQ 406 (430)
Q Consensus 332 DEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~----GG~v~gs~~li~-~l~~~~~~~~~s~s~~P~~~aa 406 (430)
||+|+.+.+.. . .. ..+||++.|+||++|.. ||+++++++.+. .++.... .++..++|..+++
T Consensus 202 De~~~~~~~~~---~--~~-----~g~div~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~--~~g~~~~~~~a~~ 269 (414)
T 3ndn_A 202 DNVFATPLLQQ---G--FP-----LGVDVVVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMR--HTGPAMSAFNAWV 269 (414)
T ss_dssp ECTTTHHHHCC---C--GG-----GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHH--HHCCCCCHHHHHH
T ss_pred ECCCcccccCC---c--hh-----cCCCeEeccCCccccCCCCceEEEEEECHHHHHHHHHHHHH--HcCCCCCHHHHHH
Confidence 99998765421 1 11 23589999999999764 499999988876 5553221 2355678888877
Q ss_pred HHHHHHHH
Q psy2206 407 ILTSMRII 414 (430)
Q Consensus 407 alaaL~~l 414 (430)
++..++.+
T Consensus 270 ~~~~l~~l 277 (414)
T 3ndn_A 270 LLKGLETL 277 (414)
T ss_dssp HHHHGGGH
T ss_pred HHHHHHHH
Confidence 77766554
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.3e-11 Score=123.47 Aligned_cols=94 Identities=15% Similarity=0.236 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcC----ccCCCCcccCHHHHHHHHHh--cCcEEEEeccccccccCCCCCc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEG----IFSMDGSIVRLPEIVRLKNK--YKAYLYVDEAHSIGALGPTGRG 346 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~----v~sm~G~i~~L~~I~~La~~--y~~~LivDEAh~~G~lG~~GrG 346 (430)
+++|+++|++ ++++|++++ +.++.|++.++++|+++|++ ||++|++||+|+.++++.. .
T Consensus 155 ~e~l~~~l~~-------------~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~--~ 219 (431)
T 3ht4_A 155 FEAVAAAIHS-------------NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQE--P 219 (431)
T ss_dssp HHHHHHHCCT-------------TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCC--G
T ss_pred HHHHHhhcCC-------------CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCC--c
Confidence 5667666542 467899997 88999999999999999999 9999999999987765321 1
Q ss_pred cceecCCCCCCccEEEeCccchhc----cccceeecCHHHHHHHHh
Q psy2206 347 VTEYFGIDPREVDILMGTYTKSFG----SMGGYVAGSKSTIDYIRA 388 (430)
Q Consensus 347 ~~e~~g~~~~~~dIv~~TlSKa~G----~~GG~v~gs~~li~~l~~ 388 (430)
.. ..+||+++|+||++| .+|||+++++++++.++.
T Consensus 220 ----~~---~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~ 258 (431)
T 3ht4_A 220 ----CH---VGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAY 258 (431)
T ss_dssp ----GG---TTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHH
T ss_pred ----cc---cCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHH
Confidence 11 135899999999964 578999999999999876
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=2.4e-11 Score=124.71 Aligned_cols=107 Identities=16% Similarity=0.172 Sum_probs=84.3
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHh--cCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc-
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNK--YKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM- 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~--y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~- 372 (430)
++++|++|++.|++|.+.|+++|.++|++ ||++|++||+|+.++... .+ . ..+||++.|++|.+|..
T Consensus 167 ~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~---p~----~---~g~Div~~S~sK~lg~~g 236 (415)
T 2fq6_A 167 NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFK---AL----D---FGIDVSIQAATKYLVGHS 236 (415)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSC---GG----G---GTCSEEEEETTTTTTCSS
T ss_pred CCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCC---cc----c---cCCeEEEEeCccccCCCC
Confidence 46799999999999999999999999999 999999999998764321 11 1 24589999999999864
Q ss_pred ---cceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 373 ---GGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 373 ---GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
||++++++++++.++.... .+++.++|..++.++.+++.+
T Consensus 237 ~~~~G~l~~~~~~~~~l~~~~~--~~G~~~~~~~a~~~~~~l~~l 279 (415)
T 2fq6_A 237 DAMIGTAVCNARCWEQLRENAY--LMGQMVDADTAYITSRGLRTL 279 (415)
T ss_dssp SCCCEEEEECTTTHHHHHHHHH--HTTCCCCHHHHHHHHHHHHHH
T ss_pred CceEEEEEeCHHHHHHHHHHHH--hcCCCCCHHHHHHHHhhhhHH
Confidence 5899999888887775432 235567788777777777655
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=7.8e-11 Score=121.07 Aligned_cols=134 Identities=15% Similarity=0.117 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|+++|++.. .++++|+++++.+++|.+.|+++|.++|++||+++++|++|+.|...- +
T Consensus 201 ~~~l~~~i~~~~----------~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~---------~ 261 (465)
T 3e9k_A 201 IEDILEVIEKEG----------DSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVEL---------Y 261 (465)
T ss_dssp HHHHHHHHHHHG----------GGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCC---------C
T ss_pred HHHHHHHHHhcC----------CCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCC---------c
Confidence 789999987531 157899999999999999999999999999999999999998765321 1
Q ss_pred CCCCCccEEEeCccchh--cccc-ceeecCHHHHHHHHhcCCcc---------------c--------ccCCCcHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSF--GSMG-GYVAGSKSTIDYIRANSHVR---------------S--------YATSMPPPVAMQ 406 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~--G~~G-G~v~gs~~li~~l~~~~~~~---------------~--------~s~s~~P~~~aa 406 (430)
+....+|+++.|++|.+ |..| |++..++++++.+.....++ . -..++++..+++
T Consensus 262 ~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a 341 (465)
T 3e9k_A 262 LHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCS 341 (465)
T ss_dssp HHHHTCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHH
T ss_pred hhhcCCCEEEECcccccccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHH
Confidence 11124589999999999 3334 78888888876554221110 0 012567777888
Q ss_pred HHHHHHHHHccCCchHHHhh
Q psy2206 407 ILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 407 alaaL~~l~~~~~~~~~~~r 426 (430)
..++++.+.+. +.++++++
T Consensus 342 ~~aal~~~~~~-~~~~~~~~ 360 (465)
T 3e9k_A 342 LHASLEIFKQA-TMKALRKK 360 (465)
T ss_dssp HHHHHHHHHHH-CHHHHHHH
T ss_pred HHHHHHHHHHc-CHHHHHHH
Confidence 88899887654 33444443
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.13 E-value=3.7e-11 Score=120.57 Aligned_cols=122 Identities=16% Similarity=0.213 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|+++|.+ ++++|+++.+.+++|.+.|+++|+++|++||++||+||+|+.|... ..+ ..+
T Consensus 155 ~~~l~~~i~~-------------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~---~~~-~~~- 216 (416)
T 1qz9_A 155 PEELPQAIDQ-------------DTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVP---VDL-HQA- 216 (416)
T ss_dssp GGGHHHHCST-------------TEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSC---CCH-HHH-
T ss_pred HHHHHHHhCC-------------CceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcC---CCh-hhc-
Confidence 6777766532 4678999999999999999999999999999999999999854321 111 111
Q ss_pred CCCCCccEEEeCccchh-c-ccc-ceeecCHHHHHHHHhcCCcc--------------------cc-cCCCcHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSF-G-SMG-GYVAGSKSTIDYIRANSHVR--------------------SY-ATSMPPPVAMQIL 408 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~-G-~~G-G~v~gs~~li~~l~~~~~~~--------------------~~-s~s~~P~~~aaal 408 (430)
.+|+++.|++|.+ + ..+ |++++++++++.++....++ .+ ..+.++..++++.
T Consensus 217 ----~~d~~~~s~~K~l~~g~~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 292 (416)
T 1qz9_A 217 ----GADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVE 292 (416)
T ss_dssp ----TCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHH
T ss_pred ----CCCEEEecCcccCCCCCCCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHH
Confidence 2589999999997 3 344 89999998877665421110 11 2346777777777
Q ss_pred HHHHHHHc
Q psy2206 409 TSMRIIMG 416 (430)
Q Consensus 409 aaL~~l~~ 416 (430)
++++.+.+
T Consensus 293 ~al~~~~~ 300 (416)
T 1qz9_A 293 CGLDVFAQ 300 (416)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 88887754
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=4.3e-11 Score=117.50 Aligned_cols=118 Identities=19% Similarity=0.205 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++++ ++++|+++++.+++|.+.|+++|+++|++||+ ||+||+|+.|.+. ++
T Consensus 128 ~~~l~~~i~~-------------~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~---------~~ 184 (382)
T 4hvk_A 128 VSFIDQKLRD-------------DTILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIE---------VD 184 (382)
T ss_dssp HHHHHHHCCT-------------TEEEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBC---------CC
T ss_pred HHHHHHHhcc-------------CceEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCC---------CC
Confidence 5777776543 46799999999999999999999999999999 9999999865431 11
Q ss_pred CCCCCccEEEeCccchhcccc-ceeecCHHHHHHHHhcCC-----cccccCCCcHHHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIRANSH-----VRSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~~~~~-----~~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
+....+|+++.|+||.+|..| |+++++++. .++.... ......+.++..++++.++++.+.
T Consensus 185 ~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~ 251 (382)
T 4hvk_A 185 VEKIGADMLTISSNDIYGPKGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITA 251 (382)
T ss_dssp HHHHTCSEEEEESGGGTSCTTCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHH
T ss_pred chhcCCCEEEEeHHHhcCCCceEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHHHHH
Confidence 111135899999999988765 777666554 1111100 001134456677777777777654
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=117.93 Aligned_cols=128 Identities=19% Similarity=0.154 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHh-----cCcEEEEeccccccccCCCC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNK-----YKAYLYVDEAHSIGALGPTG 344 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~-----y~~~LivDEAh~~G~lG~~G 344 (430)
+++|+++|++. +.++++|++..+.+++|.+.| +++|+++|++ ||++||+||+|+...++..+
T Consensus 176 ~~~l~~~l~~~----------~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~ 245 (430)
T 2x5f_A 176 TDSLVEALQSY----------NKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVY 245 (430)
T ss_dssp SHHHHHHHHHC----------CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSC
T ss_pred HHHHHHHHHhc----------CCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCccc
Confidence 67888888752 114566666777999999998 9999999999 99999999999876554321
Q ss_pred -Cccc-eecCCCCCCc---cEEEeCccchhcccc---ceeec---CHHHHHHHHhcCCcc--cccCCCcHHHHHHHHHHH
Q psy2206 345 -RGVT-EYFGIDPREV---DILMGTYTKSFGSMG---GYVAG---SKSTIDYIRANSHVR--SYATSMPPPVAMQILTSM 411 (430)
Q Consensus 345 -rG~~-e~~g~~~~~~---dIv~~TlSKa~G~~G---G~v~g---s~~li~~l~~~~~~~--~~s~s~~P~~~aaalaaL 411 (430)
..+. ...+.. +. +|+++||||+||++| ||+++ ++++++.+....... ..+.+.+++.++++.++|
T Consensus 246 ~~~~~~~~~~~~--~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l 323 (430)
T 2x5f_A 246 TQSLFTALTNLH--SNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVL 323 (430)
T ss_dssp CSCHHHHHHTTC--CTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred chHHHHHHhhcc--CCcceEEEEEecccCCCCCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHH
Confidence 1222 221222 34 688999999999888 99999 999999887633210 013346777777777777
Q ss_pred H
Q psy2206 412 R 412 (430)
Q Consensus 412 ~ 412 (430)
+
T Consensus 324 ~ 324 (430)
T 2x5f_A 324 K 324 (430)
T ss_dssp H
T ss_pred c
Confidence 7
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=113.50 Aligned_cols=111 Identities=14% Similarity=0.154 Sum_probs=80.0
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhc--CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchh-cccc
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKY--KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSF-GSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y--~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~-G~~G 373 (430)
+++|+++++.+++|.+.|+++|.++|++| |++||+||+|+.|... +++...++|+++.|+||++ |..|
T Consensus 122 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~---------~~~~~~~~d~~~~s~~K~~~~~~g 192 (352)
T 1iug_A 122 YAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGE---------VALEAMGVDAAASGSQKGLMCPPG 192 (352)
T ss_dssp CSEEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBC---------CCSGGGTCSEEEEESSSTTCCCSC
T ss_pred CcEEEEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCcc---------eeccccCeeEEEecCcccccCCCc
Confidence 45788899999999999999999999999 9999999999854321 1111113589999999955 5556
Q ss_pred -ceeecCHHHHHH---------HH----hcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 374 -GYVAGSKSTIDY---------IR----ANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 374 -G~v~gs~~li~~---------l~----~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
|++++++++++. ++ ..... .+..+.++..++++.++++.+.+.
T Consensus 193 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~al~~~~~~ 249 (352)
T 1iug_A 193 LGFVALSPRALERLKPRGYYLDLARELKAQKEG-ESAWTPAINLVLAVAAVLEEVLPR 249 (352)
T ss_dssp EEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTT-CCSSCCCHHHHHHHHHHHHHHGGG
T ss_pred eeEEEECHHHHHHhhCCCceeeHHHHHhhcccC-CCCCCCCHHHHHHHHHHHHHHHHH
Confidence 899999987754 22 11111 234456777777777888876543
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-10 Score=115.01 Aligned_cols=105 Identities=15% Similarity=0.116 Sum_probs=81.7
Q ss_pred EEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc---ce
Q psy2206 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG---GY 375 (430)
Q Consensus 299 lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G---G~ 375 (430)
+|+++.+.+++|.+.|+++|.++|++||++||+||+|+.. .| .+.....+. .+.+|+++||||++|++| ||
T Consensus 152 ~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~-~~---~~~~~~~~~--~~~~i~~~s~sK~~g~~G~r~G~ 225 (360)
T 3hdo_A 152 VFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEF-AE---SNALELVRR--HENVVVTRTLSKSYSLAGMRIGL 225 (360)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGG-SS---CCCTHHHHH--CSSEEEEEESTTTTSCTTSCCEE
T ss_pred EEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhh-CC---cchhHHhcc--CCCEEEEecchHhhcCCccceee
Confidence 7788889999999999999999999999999999999752 22 222222111 234789999999998887 99
Q ss_pred eecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 376 VAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 376 v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
+++++++++.++..... .+.+++.++++.++|+.
T Consensus 226 ~~~~~~~~~~~~~~~~~----~~~~~~~~~a~~~~l~~ 259 (360)
T 3hdo_A 226 AIARPEVIAALDKIRDH----YNLDRLAQAACVAALRD 259 (360)
T ss_dssp EECCHHHHHHHHHHSCS----CCSCHHHHHHHHHHHHC
T ss_pred EeeCHHHHHHHHHhCCC----CCCCHHHHHHHHHHhcC
Confidence 99999999999875533 24677777777777763
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-10 Score=121.31 Aligned_cols=105 Identities=20% Similarity=0.197 Sum_probs=79.5
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|+++++.+++|.+.|+++|+++|++||++||+||+|+.|.+. .. .+ .++||++.|+||+++.
T Consensus 217 ~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~---~~-~~------~~~div~~S~sK~~~g~~Gl 286 (464)
T 1ibj_A 217 QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLS---RP-LE------LGADIVMHSATKFIAGHSDV 286 (464)
T ss_dssp SEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTC---CG-GG------TTCSEEEEETTTTTTCSSCC
T ss_pred CceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccC---Ch-hh------cCCEEEEECCcccccCCCCC
Confidence 4778999999999999999999999999999999999999765321 11 11 1468999999999964
Q ss_pred ccceeecC-HHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 372 MGGYVAGS-KSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 372 ~GG~v~gs-~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
.+|+++++ +++++.++.... .++..++|..+++++++++
T Consensus 287 ~~G~l~~~~~~l~~~l~~~~~--~~g~~~~~~~~~a~~~al~ 326 (464)
T 1ibj_A 287 MAGVLAVKGEKLAKEVYFLQN--SEGSGLAPFDCWLCLRGIK 326 (464)
T ss_dssp CCEEEEECSHHHHHHHHHHHH--HTTCBCCHHHHHHHHHHHT
T ss_pred cEEEEEEChHHHHHHHHHHHH--hcCCCCCHHHHHHHHhchh
Confidence 34888888 588887765321 1234457777777666654
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.2e-11 Score=121.18 Aligned_cols=111 Identities=16% Similarity=0.293 Sum_probs=83.8
Q ss_pred eEE-EEEcCccCCCC-cccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhc-ccc
Q psy2206 297 KIL-IVVEGIFSMDG-SIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG-SMG 373 (430)
Q Consensus 297 ~~l-Ii~E~v~sm~G-~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G-~~G 373 (430)
+++ |+++++.+++| .+.++++|.++|++||++||+||+|+.++.++........+ ..||+++|+||+++ ..+
T Consensus 141 ~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~-----~~di~~~S~sK~l~g~~~ 215 (374)
T 2aeu_A 141 DTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKL-----GADLVVTSTDKLMEGPRG 215 (374)
T ss_dssp TEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHH-----TCSEEEEETTSSSSSCSC
T ss_pred ccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCcccc-----CCcEEEecCcccccCcce
Confidence 457 88899999999 89999999999999999999999998764211111101111 24899999999985 456
Q ss_pred ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 374 GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 374 G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
||+++++++++.++.... .++++++|+.++++.++|+.+
T Consensus 216 G~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~a~~~al~~~ 254 (374)
T 2aeu_A 216 GLLAGKKELVDKIYIEGT--KFGLEAQPPLLAGIYRALKNF 254 (374)
T ss_dssp EEEEEEHHHHHHHHHHHH--TTTCBCCHHHHHHHHHHHHHC
T ss_pred EEEEECHHHHHHHHHhhc--cccCCCCHHHHHHHHHHHHHH
Confidence 999999999998876432 234567888888888888764
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.4e-10 Score=116.27 Aligned_cols=97 Identities=21% Similarity=0.230 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++++. ++++|+++++.+ |...++++|+++|++||++||+||+|+.|++.. |. +++
T Consensus 161 ~~~l~~~i~~~------------~~~~v~~~~~~~--~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~-~~----~~~ 221 (425)
T 3ecd_A 161 YDQVEALAQQH------------KPSLIIAGFSAY--PRKLDFARFRAIADSVGAKLMVDMAHIAGVIAA-GR----HAN 221 (425)
T ss_dssp HHHHHHHHHHH------------CCSEEEEECSCC--CSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHT-TS----SCC
T ss_pred HHHHHHHHhhc------------CCcEEEEccccC--CCcCCHHHHHHHHHHcCCEEEEECcChHhhhhc-cc----ccC
Confidence 68898888752 233566664332 678899999999999999999999998886532 21 111
Q ss_pred CCCCCccEEEeCccchhc-cccceeecC-HHHHHHHHhc
Q psy2206 353 IDPREVDILMGTYTKSFG-SMGGYVAGS-KSTIDYIRAN 389 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G-~~GG~v~gs-~~li~~l~~~ 389 (430)
.. ..+||+++||||+++ ..|||++++ +++++.+...
T Consensus 222 ~~-~~~di~~~s~sK~l~g~~~g~~~~~~~~~~~~~~~~ 259 (425)
T 3ecd_A 222 PV-EHAHVVTSTTHKTLRGPRGGFVLTNDEEIAKKINSA 259 (425)
T ss_dssp GG-GTCSEEEEESSGGGCCCSCEEEEESCHHHHHHHHHH
T ss_pred ch-hcCcEEEecCCcccCCCCcEEEEeCCHHHHHHHHhh
Confidence 11 136899999999994 458999887 6777777653
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-10 Score=113.27 Aligned_cols=111 Identities=15% Similarity=0.168 Sum_probs=82.3
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhc-CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhc-ccc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKY-KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG-SMG 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y-~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G-~~G 373 (430)
++++|+++.+.+++|.+.|+++|.++|++| |++||+||+|+.|... ..+ .++|+++.|+||+++ .+|
T Consensus 130 ~~~~v~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~---------~~~--~~~d~~~~s~~K~~~~~~G 198 (362)
T 3ffr_A 130 DAEIICLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPK---------FDW--TKIDSVFFSVQKCFGLPAG 198 (362)
T ss_dssp TCCEEEEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSC---------CCT--TSCSEEEEETTSTTCCCSC
T ss_pred CccEEEEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcc---------cCh--hHCcEEEEecccccCCCCc
Confidence 456788889999999999999999999999 9999999999865321 122 237899999999998 666
Q ss_pred -ceeecCHHHHHHHHhcCC-----cc--------------cccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 374 -GYVAGSKSTIDYIRANSH-----VR--------------SYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 374 -G~v~gs~~li~~l~~~~~-----~~--------------~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
|++++++++++.++.... ++ ....+.++..++++.++++.+.++
T Consensus 199 ~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~ 262 (362)
T 3ffr_A 199 LGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQI 262 (362)
T ss_dssp CEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHc
Confidence 788899999887765321 11 113345666666667777766543
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.2e-11 Score=130.89 Aligned_cols=130 Identities=12% Similarity=0.129 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccc-cCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGA-LGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~-lG~~GrG~~e~~ 351 (430)
+++||++|++. |++..+ +.+||+++ +++|.+.|+++|.++|++++ |++||||+.++ +++.+.+..
T Consensus 282 ~e~Le~~l~~~-----~~~k~p--~~vivt~p--n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~~~~~--- 347 (715)
T 3n75_A 282 HATIAKRVKET-----PNATWP--VHAVITNS--TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKC--- 347 (715)
T ss_dssp HHHHHHHHHHS-----TTCCSC--SEEEEESS--CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGGTTSS---
T ss_pred HHHHHHHHhhC-----cCccCc--eEEEEECC--CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCcccccc---
Confidence 67888888763 211111 25677777 89999999999999998774 79999999886 555433321
Q ss_pred CCCC-CCccEE---EeCccchhcc--ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 352 GIDP-REVDIL---MGTYTKSFGS--MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 352 g~~~-~~~dIv---~~TlSKa~G~--~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
.+.. ..+|++ ++|+||++++ .||+++++.++.....+.+....+|++++++.+|+..+|++++++
T Consensus 348 al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~~~ 418 (715)
T 3n75_A 348 GMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKG 418 (715)
T ss_dssp TTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSH
T ss_pred ccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHh
Confidence 1111 123544 9999999986 578888766543322333445667889999999989999988864
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.2e-10 Score=113.24 Aligned_cols=121 Identities=15% Similarity=0.122 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEE-cCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVV-EGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~-E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
+++|++++++. ++++|++ ++.+ |.+.|+++|.++|++||++||+||+|+.|+... |. ...
T Consensus 152 ~~~l~~~l~~~------------~~~~v~~~~p~~---~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~-~~--~~~- 212 (407)
T 2dkj_A 152 LEEVRRLALEH------------RPKVIVAGASAY---PRFWDFKAFREIADEVGAYLVVDMAHFAGLVAA-GL--HPN- 212 (407)
T ss_dssp HHHHHHHHHHH------------CCSEEEECCSSC---CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHT-TC--SCC-
T ss_pred HHHHHHHHhhc------------CCeEEEEecccc---CCCCCHHHHHHHHHHcCCEEEEEcccccccccc-Cc--cCC-
Confidence 78888888742 1234444 5554 477899999999999999999999999866432 21 111
Q ss_pred CCCCCCccEEEeCccchhc-cccceeecC-HHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHH
Q psy2206 352 GIDPREVDILMGTYTKSFG-SMGGYVAGS-KSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G-~~GG~v~gs-~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
.+. ..||++.||||+++ ..|||++++ +++++.++.....+. +++.++.+++++.++++.+.
T Consensus 213 ~~~--~~di~~~s~sK~l~g~~~G~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~a~~~al~~~~ 275 (407)
T 2dkj_A 213 PLP--YAHVVTSTTHKTLRGPRGGLILSNDPELGKRIDKLIFPGI-QGGPLEHVIAGKAVAFFEAL 275 (407)
T ss_dssp CTT--TCSEEEEESSGGGCCCSCEEEEESCHHHHHHHHHHHTTTT-CSSCCHHHHHHHHHHHHHHH
T ss_pred ccc--cccEEEEeccccCCCCCceEEEECCHHHHHHHHhhhcccc-cCCCcHHHHHHHHHHHHHHH
Confidence 111 36899999999884 667999999 899988876443332 34456766767777887764
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=5.7e-11 Score=117.27 Aligned_cols=119 Identities=20% Similarity=0.185 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+++ ++++|+++++++++|.+.|+++|.++|++||++ |+||+|+.|... ..+ ..+
T Consensus 128 ~~~l~~~i~~-------------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~---~~~-~~~- 188 (382)
T 4eb5_A 128 VSFIDQKLRD-------------DTILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIE---VDV-EKI- 188 (382)
T ss_dssp HHHHHHHCCT-------------TEEEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBC---CCH-HHH-
T ss_pred HHHHHHHhcC-------------CCeEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcc---cCc-ccc-
Confidence 5667766532 356899999999999999999999999999999 999999854221 111 111
Q ss_pred CCCCCccEEEeCccchhcccc-ceeecCHHHHHHHHhcCC-----cccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 353 IDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIRANSH-----VRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~~~~~-----~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
++||++.|+||.+|..| |+++++++. .++.... ......+.++..++++.++++.+.+
T Consensus 189 ----~~di~~~s~sK~~g~~g~G~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~ 252 (382)
T 4eb5_A 189 ----GADMLTISSNDIYGPKGVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAM 252 (382)
T ss_dssp ----TCSEEEEETGGGTCCSSCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHH
T ss_pred ----CCCEEEeehHHhcCCCceEEEEEcccc--ccCceecCCCccccccCCCccHHHHHHHHHHHHHHHH
Confidence 35899999999988766 787777653 1111100 0112234556666666777877643
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.08 E-value=7e-11 Score=117.72 Aligned_cols=111 Identities=16% Similarity=0.217 Sum_probs=76.0
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-c
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-G 374 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G 374 (430)
++++|+++++.+++|.+.|+++|+++|++||++||+||+|+.|... .++... +|+++.|++|.+|..| |
T Consensus 159 ~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~---------~~~~~~-~d~~~~s~~K~~g~~g~g 228 (400)
T 3vax_A 159 DTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVP---------GDLTTP-IDMISISGHKIGAPKGVG 228 (400)
T ss_dssp TEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSG---------GGGGSC-CSEEEEETGGGTSCSSCE
T ss_pred CceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCC---------cChhhc-CcEEEEeHHHhCCCCceE
Confidence 4679999999999999999999999999999999999999865431 111112 5899999999888665 6
Q ss_pred eee-cCH-HHH---HHHHhcCC----c-ccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 375 YVA-GSK-STI---DYIRANSH----V-RSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 375 ~v~-gs~-~li---~~l~~~~~----~-~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
+++ .++ +++ ..+..... . .....+.++..++++.++++.+.+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~ 280 (400)
T 3vax_A 229 ALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKIFEA 280 (400)
T ss_dssp EEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHH
T ss_pred EEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHHHHHHHHHHHh
Confidence 666 554 221 11111100 0 112344566777767778887654
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.7e-10 Score=118.88 Aligned_cols=138 Identities=16% Similarity=0.128 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEE
Q psy2206 253 TERSKESVKQSGCALCSPS--APSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLY 330 (430)
Q Consensus 253 ~~a~~~ai~~yG~g~~~sr--~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~Li 330 (430)
.....+.+..+|....... .+++|++++++ ++++|++|++.+++|.+.|+++|+++|++||++||
T Consensus 135 ~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai~~-------------~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~li 201 (430)
T 3ri6_A 135 LSLFQKTLPSFGIEVRFVDVMDSLAVEHACDE-------------TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLV 201 (430)
T ss_dssp HHHHHTHHHHTTCEEEEECTTCHHHHHHHCCT-------------TEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHHcCCEEEEeCCCCHHHHHHhhCC-------------CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEE
Confidence 3444445666665322111 25666665532 47789999999999999999999999999999999
Q ss_pred EeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----ccceee--cCHHH------------------HHHH
Q psy2206 331 VDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS----MGGYVA--GSKST------------------IDYI 386 (430)
Q Consensus 331 vDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~----~GG~v~--gs~~l------------------i~~l 386 (430)
+||+|+.+.+-. . .. ..+||++.|+||++|. .||+++ ++..+ ++.+
T Consensus 202 vD~a~~~~~~~~---~--~~-----~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~ 271 (430)
T 3ri6_A 202 VDTTMTPPYLLE---A--KR-----LGVDIEVLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKA 271 (430)
T ss_dssp EECTTSCTTTCC---G--GG-----GTCSEEEEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHH
T ss_pred EECCCcccccCC---h--HH-----cCCEEEEECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHH
Confidence 999998765411 1 11 2358999999999975 678887 44222 3333
Q ss_pred HhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 387 RANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 387 ~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
+... ...++..++|..++.++..++.+
T Consensus 272 ~~~~-~~~~g~~~~~~~a~l~l~~l~~l 298 (430)
T 3ri6_A 272 RKEV-FQNLGPSLSPHNAYLQSLGLETM 298 (430)
T ss_dssp HHTH-HHHHCCCCCHHHHHHHHHHHHHH
T ss_pred HHHH-HHhcCCCCCHHHHHHHHhhhhhH
Confidence 3211 12346678899888888877766
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.07 E-value=2.7e-10 Score=114.12 Aligned_cols=121 Identities=15% Similarity=0.140 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++++. ++++|++.... .|.+.|+++|+++|++||++||+||+|+.|.+.. |. ...
T Consensus 153 ~~~l~~~i~~~------------~~~~v~~~~~~--~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~-~~----~~~ 213 (417)
T 3n0l_A 153 YEKVREIAKKE------------KPKLIVCGASA--YARVIDFAKFREIADEIGAYLFADIAHIAGLVVA-GE----HPS 213 (417)
T ss_dssp HHHHHHHHHHH------------CCSEEEECCSS--CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHT-TS----SCC
T ss_pred HHHHHHHHHhc------------CCeEEEECCcc--cCccCCHHHHHHHHHHcCCEEEEECccchhhhhc-cc----CCC
Confidence 78898888742 12345544333 3999999999999999999999999998776422 11 111
Q ss_pred CCCCCccEEEeCccchhcc-ccceeecC-HHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGS-MGGYVAGS-KSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~-~GG~v~gs-~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.. ...||+++|+||+++. .|||++++ +++++.++....... ++++++..++++.+++..+
T Consensus 214 ~~-~~~di~~~s~sK~l~g~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~aa~~~a~~~~ 275 (417)
T 3n0l_A 214 PF-PYAHVVSSTTHKTLRGPRGGIIMTNDEELAKKINSAIFPGI-QGGPLMHVIAAKAVGFKFN 275 (417)
T ss_dssp CT-TTCSEEEEESSTTTCSCSCEEEEESCHHHHHHHHHHHTTTT-CSSCCHHHHHHHHHHHHHH
T ss_pred cc-ccceEEEeeCccccCCCCeeEEEECCHHHHHHHhhhhCCcc-cCCcHHHHHHHHHHHHHHH
Confidence 11 2468999999999954 48999998 799988876433322 3344555555556666553
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.1e-10 Score=123.08 Aligned_cols=80 Identities=16% Similarity=0.130 Sum_probs=60.7
Q ss_pred ceEEEEEcCccCCCCcccCHH---HHHHHHH-hcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLP---EIVRLKN-KYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~---~I~~La~-~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~ 371 (430)
++++|++..+.+++|.+.+.+ +|+++|+ +||++||+||+|+...++ +..+.. .. .+.+|+++||||++|+
T Consensus 244 ~~k~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~--~~~~~~---~~-~~~~i~~~S~SK~~g~ 317 (533)
T 3f6t_A 244 SIKALIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPN--FKSIYS---VV-PYNTMLVYSYSKLFGC 317 (533)
T ss_dssp TEEEEEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTT--CCCHHH---HS-GGGEEEEEESHHHHTC
T ss_pred CCeEEEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccC--ccCHhh---cC-CCCEEEEecCcccCCC
Confidence 356777779999999998855 7888888 699999999999854332 222221 11 2467999999999999
Q ss_pred cc---ceeecCHH
Q psy2206 372 MG---GYVAGSKS 381 (430)
Q Consensus 372 ~G---G~v~gs~~ 381 (430)
+| ||++++++
T Consensus 318 ~G~RiG~l~~~~~ 330 (533)
T 3f6t_A 318 TGWRLGVIALNEK 330 (533)
T ss_dssp GGGCEEEEEEESS
T ss_pred cccceEEEEECcH
Confidence 98 99998776
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.1e-10 Score=113.09 Aligned_cols=103 Identities=14% Similarity=0.033 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccc----
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT---- 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~---- 348 (430)
+++|++++++. ++++|+++.+.+++|.+.|+++|+++|++||++||+||+|+.++++..+.+..
T Consensus 160 ~~~l~~~i~~~------------~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~ 227 (397)
T 3f9t_A 160 EKFVKDAVEDY------------DVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGV 227 (397)
T ss_dssp HHHHHHHHHHS------------CCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTC
T ss_pred HHHHHHHHhhc------------CCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccc
Confidence 68898888761 24578888889999999999999999999999999999999776654443211
Q ss_pred -eecCCCCCCccEEEeCccchhccc--cce-eecCHHHHHHHHh
Q psy2206 349 -EYFGIDPREVDILMGTYTKSFGSM--GGY-VAGSKSTIDYIRA 388 (430)
Q Consensus 349 -e~~g~~~~~~dIv~~TlSKa~G~~--GG~-v~gs~~li~~l~~ 388 (430)
..+.+.. .+|+++.|++|.++.+ .|+ ++.++.+++.++.
T Consensus 228 ~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~~~~~~~ 270 (397)
T 3f9t_A 228 NYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGYKRYLDV 270 (397)
T ss_dssp CCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGGGGGTCE
T ss_pred cccccccc-cCCeEEEccccccCCCCCceEEEEeCHHHHHhhcc
Confidence 1222222 5689999999988532 255 4556666665543
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.05 E-value=2.4e-10 Score=115.00 Aligned_cols=128 Identities=16% Similarity=0.068 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCC---CCCc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGP---TGRG 346 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~---~GrG 346 (430)
+++|++.+++. +..++++++..+.+++|.+.+ +++|+++|++||++||+||+|+...++. .+..
T Consensus 163 ~~~l~~~l~~~----------~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 232 (412)
T 1yaa_A 163 LNGFLNAIQKA----------PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYA 232 (412)
T ss_dssp HHHHHHHHHHS----------CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHH
T ss_pred HHHHHHHHHhC----------CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHH
Confidence 67888888652 113567777999999999876 7788999999999999999997544432 1112
Q ss_pred cceecCCCCCC--ccEEEeCccchhcccc---ceee--c-----CHH----HHHHHHhcCCcccccCCCcHHHHHHHHHH
Q psy2206 347 VTEYFGIDPRE--VDILMGTYTKSFGSMG---GYVA--G-----SKS----TIDYIRANSHVRSYATSMPPPVAMQILTS 410 (430)
Q Consensus 347 ~~e~~g~~~~~--~dIv~~TlSKa~G~~G---G~v~--g-----s~~----li~~l~~~~~~~~~s~s~~P~~~aaalaa 410 (430)
+....... .+ .+|+++||||++|++| ||++ + +++ +++.+....+. .++ ..+++.++++.++
T Consensus 233 ~~~~~~~~-~~~~~~i~~~s~sK~~~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~-~~~~~~~~a~~~~ 309 (412)
T 1yaa_A 233 VRLGVEKL-STVSPVFVCQSFAKNAGMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRS-EVS-NPPAYGAKIVAKL 309 (412)
T ss_dssp HHHHHHHT-TTTCCEEEEEECTTTSCCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHT-TTS-SCCHHHHHHHHHH
T ss_pred HHHHHhcC-CCCcceEEEeccCCCCCCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhh-ccC-CCChHHHHHHHHH
Confidence 21211111 11 4789999999999878 9987 6 666 78777663211 222 3355555556666
Q ss_pred HHH
Q psy2206 411 MRI 413 (430)
Q Consensus 411 L~~ 413 (430)
|+.
T Consensus 310 l~~ 312 (412)
T 1yaa_A 310 LET 312 (412)
T ss_dssp HHS
T ss_pred hCC
Confidence 654
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.2e-10 Score=115.07 Aligned_cols=114 Identities=15% Similarity=0.148 Sum_probs=76.2
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCC-CCccEEEeCccchhccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDP-REVDILMGTYTKSFGSM 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~-~~~dIv~~TlSKa~G~~ 372 (430)
+++|+++.+.+++|.+.| +++|+++|++||++||+||+|+...++ |........+.. .+.+|+++||||++|++
T Consensus 164 ~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 241 (400)
T 3asa_A 164 IDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISD--PSLPKSIFEIPDARFCAIEINSFSKPLGFA 241 (400)
T ss_dssp CSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCC--TTSCSSGGGSTTGGGTEEEEEECCGGGTTT
T ss_pred ccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcC--CCCCCchhhCCCCCCceEEEecchhhcCCc
Confidence 345666688999999987 778899999999999999999843332 221111122211 23568999999999988
Q ss_pred c---ceeecCHHH-------HHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 373 G---GYVAGSKST-------IDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 373 G---G~v~gs~~l-------i~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
| ||+++++++ ++.+........+. +.+++..+++.++|+.
T Consensus 242 GlriG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~ 291 (400)
T 3asa_A 242 GIRLGWTVIPQELTYADGHFVIQDWERFLSTTFN-GASIPAQEAGVAGLSI 291 (400)
T ss_dssp TCCCEEEECCTTCBCTTSCBHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHH
T ss_pred chheeEEeeChhhccchhhhHHHHHHHHhccCcc-CCChHHHHHHHHHhCc
Confidence 8 999999888 66554322222232 3455555556666654
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.05 E-value=3e-10 Score=116.57 Aligned_cols=120 Identities=17% Similarity=0.192 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEE-cCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVV-EGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~-E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
+++|++++++. ++++|++ .+.+++. .++++|+++|++||++||+||+|..|+.. .|. +.
T Consensus 174 ~~~l~~~i~~~------------~~~~i~~~~~~~~~~---~~l~~i~~l~~~~g~lli~Dea~~~g~~~-~g~----~~ 233 (447)
T 3h7f_A 174 MDAVRATALEF------------RPKVIIAGWSAYPRV---LDFAAFRSIADEVGAKLLVDMAHFAGLVA-AGL----HP 233 (447)
T ss_dssp HHHHHHHHHHH------------CCSEEEEECSSCCSC---CCHHHHHHHHHHHTCEEEEECTTTHHHHH-TTS----SC
T ss_pred HHHHHHHHHhc------------CCeEEEEcCCCCCCc---cCHHHHHHHHHHcCCEEEEECCchhhhhc-CCC----CC
Confidence 78898888653 1225555 4555433 39999999999999999999999877532 121 11
Q ss_pred CCCCCCccEEEeCccchhc-cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 352 GIDPREVDILMGTYTKSFG-SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G-~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
... ..+||++.|+||+++ ..||++++++++++.+.....++.++++.++..++ +.+++..+
T Consensus 234 ~~~-~~~di~~~s~sK~l~G~~gG~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~a-~~~a~~~~ 295 (447)
T 3h7f_A 234 SPV-PHADVVSTTVHKTLGGGRSGLIVGKQQYAKAINSAVFPGQQGGPLMHVIAG-KAVALKIA 295 (447)
T ss_dssp CST-TTCSEEEEESSGGGCCCSCEEEEECGGGHHHHHHHHTTTTCSSCCHHHHHH-HHHHHHHT
T ss_pred CCC-CCCcEEEecCCcCCCCCCeEEEEECHHHHHHHhhhcCCcccCCccHHHHHH-HHHHHHHh
Confidence 111 246899999999996 66899999999999887754455455544443443 34444443
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.5e-10 Score=114.75 Aligned_cols=108 Identities=17% Similarity=0.202 Sum_probs=78.4
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEecccccc-ccCCCCCccceecCCCCCCccEEEeCccchhccc--
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIG-ALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM-- 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G-~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~-- 372 (430)
++++|+++++.+++|.+.|+++|.++|++||+++|+||+|+.+ +.. .. .. .+.||++.|+||.++.+
T Consensus 140 ~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~---~~----~~---~~~di~~~S~~K~~~~~~~ 209 (412)
T 2cb1_A 140 KTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALC---RP----LA---WGAHVVVESLTKWASGHGS 209 (412)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSC---CG----GG---GTCSEEEEETTTTTTCSSC
T ss_pred CCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccC---Cc----cc---cCCeEEEECCcccccCCCC
Confidence 4678999999999999999999999999999999999999865 211 11 11 24699999999999763
Q ss_pred --cceeecCH---------------------------HHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 373 --GGYVAGSK---------------------------STIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 373 --GG~v~gs~---------------------------~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
||+++.++ ++++.++.... ..++..++|..++.++..++.+
T Consensus 210 ~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~-~~~g~~~~~~~a~~~~~~l~~l 279 (412)
T 2cb1_A 210 VLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGL-SLCGMALSPFNAYLLFQGLETV 279 (412)
T ss_dssp CCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHT-TTTCCCCCHHHHHHHHHHGGGH
T ss_pred cEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHH-HhcCCCCChHHhHHHHcCCchH
Confidence 55565552 45555554220 1234467888888777777655
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=5.4e-10 Score=110.78 Aligned_cols=107 Identities=17% Similarity=0.203 Sum_probs=76.1
Q ss_pred eEEEEEcCccCCCCcccCHH---HHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVRLP---EIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~---~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|++..+.+++|.+.|.+ +|+++|+ ||++||+||+|+... . +..+....+. .+.+|++.||||+||++|
T Consensus 147 ~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~--~-~~~~~~~~~~--~~~~i~~~s~sK~~g~~G 220 (356)
T 1fg7_A 147 VKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFC--P-QASLAGWLAE--YPHLAILRTLSKAFALAG 220 (356)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGS--G-GGCSGGGTTT--CTTEEEEEESSSTTCCGG
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhc--C-CCcHHHHHhh--CCCEEEEecchHhhcCch
Confidence 45677778999999998854 4555566 999999999997532 1 1122222121 245799999999999888
Q ss_pred ---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 374 ---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
||+++++++++.++....++ +.+++.++++.++|+.
T Consensus 221 ~r~G~~~~~~~~~~~l~~~~~~~----~~~~~~~~a~~~~l~~ 259 (356)
T 1fg7_A 221 LRCGFTLANEEVINLLMKVIAPY----PLSTPVADIAAQALSP 259 (356)
T ss_dssp GCCEEEEECHHHHHHHHHHSCSS----CSCHHHHHHHHHHTSH
T ss_pred hhhEEEEeCHHHHHHHHHhcCCC----CCCHHHHHHHHHHhcC
Confidence 99999999999988755432 3566666666776653
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.2e-10 Score=115.06 Aligned_cols=126 Identities=13% Similarity=0.140 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCC---Cc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTG---RG 346 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~G---rG 346 (430)
+++|++.+++. ..++++|++..+.+++|.+.+ +++|+++|++||++||+||+|+...+ .| ..
T Consensus 170 ~~~l~~~l~~~----------~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~--~~~~~~~ 237 (412)
T 1ajs_A 170 LQGFLSDLENA----------PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFAS--GNLEKDA 237 (412)
T ss_dssp HHHHHHHHHHS----------CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTT--SCHHHHT
T ss_pred HHHHHHHHHhC----------CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccC--Ccccccc
Confidence 67788887652 114667888999999999865 77899999999999999999864333 22 11
Q ss_pred c-ceecCCCCCCccEEEeCccchhcccc---ceeec---CHH----HHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 347 V-TEYFGIDPREVDILMGTYTKSFGSMG---GYVAG---SKS----TIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 347 ~-~e~~g~~~~~~dIv~~TlSKa~G~~G---G~v~g---s~~----li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
. ...+... .+.+|++.||||++|++| ||+++ +++ +++.+.... ...+++ .+++.++++.++|+.
T Consensus 238 ~~~~~~~~~-~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~a~~~~l~~ 312 (412)
T 1ajs_A 238 WAIRYFVSE-GFELFCAQSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQKIV-RVTWSN-PPAQGARIVARTLSD 312 (412)
T ss_dssp HHHHHHHHT-TCCEEEEEECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHHHH-HTTTSS-CCSHHHHHHHHHHHS
T ss_pred hHHHHHhcc-CCcEEEEEecccccCCCCcceEEEEEecCCHHHHHHHHHHHHHHH-hcccCC-CChHHHHHHHHHHcC
Confidence 1 1112111 133689999999999888 99988 887 444444311 122332 345555556666654
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.1e-09 Score=108.89 Aligned_cols=95 Identities=20% Similarity=0.237 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++.+++. ++++|+++.+.+++|.+.|+++|+++|++||++||+||+|+.|... ..
T Consensus 132 ~~~l~~~l~~~------------~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~---------~~ 190 (396)
T 2ch1_A 132 LETLARAIELH------------QPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVP---------FY 190 (396)
T ss_dssp HHHHHHHHHHH------------CCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBC---------CC
T ss_pred HHHHHHHHHhC------------CCCEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCc---------cc
Confidence 68888888652 2347788899999999999999999999999999999999854211 11
Q ss_pred CCCCCccEEEeCccchhcc-cc-ceeecCHHHHHHHHh
Q psy2206 353 IDPREVDILMGTYTKSFGS-MG-GYVAGSKSTIDYIRA 388 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~-~G-G~v~gs~~li~~l~~ 388 (430)
+...++|+++.|++|.++. .| |++++++++++.+..
T Consensus 191 ~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~ 228 (396)
T 2ch1_A 191 MDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRN 228 (396)
T ss_dssp TTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHT
T ss_pred hhhcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhh
Confidence 2222358999999998753 44 789999999988764
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-09 Score=113.38 Aligned_cols=111 Identities=18% Similarity=0.183 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCC--cc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR--GV 347 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr--G~ 347 (430)
+++|+++|++....+ .++++|++..+.+++|.+.+ +++|+++|++||++||+||+|+.++++.... .+
T Consensus 221 ~~~l~~~l~~~~~~~-------~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~ 293 (500)
T 3tcm_A 221 TSDVKKQLEDARSRG-------INVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSF 293 (500)
T ss_dssp HHHHHHHHHHHHHTT-------CEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCH
T ss_pred HHHHHHHHHHHHhcC-------CCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcH
Confidence 688888887642111 13556666688999999876 7778888999999999999999888754322 11
Q ss_pred c---eecCC-CCCCccEEEeCccchh-cccc---ceeec---CHHHHHHHHhcC
Q psy2206 348 T---EYFGI-DPREVDILMGTYTKSF-GSMG---GYVAG---SKSTIDYIRANS 390 (430)
Q Consensus 348 ~---e~~g~-~~~~~dIv~~TlSKa~-G~~G---G~v~g---s~~li~~l~~~~ 390 (430)
. ..++. ......|+++||||+| |++| ||+++ ++++++.+....
T Consensus 294 ~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~~~l~~~~ 347 (500)
T 3tcm_A 294 KKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVREQIYKIA 347 (500)
T ss_dssp HHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHHHHHHHHH
T ss_pred HHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHHHHHHHHH
Confidence 1 22322 1112248889999999 6555 99987 899999887643
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.03 E-value=6.9e-10 Score=112.74 Aligned_cols=122 Identities=16% Similarity=0.082 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccce
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE 349 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e 349 (430)
+++|+++|++.. .++++|++..+.+++|.+.| +++|+++|++||++||+||+|+.++-+....+...
T Consensus 193 ~~~l~~~l~~~~----------~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~ 262 (444)
T 3if2_A 193 FEALENLPALKE----------GRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHL 262 (444)
T ss_dssp HHHHHTCHHHHT----------TCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCC
T ss_pred HHHHHHHHHhcC----------CCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccccccc
Confidence 567777654421 14667788888999999999 99999999999999999999975432111111111
Q ss_pred ecCCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 350 YFGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 350 ~~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
...+.+|+++||||. +++| ||+++++++++.+........+ ..++..++++.+.+
T Consensus 263 ----~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~a~~~~l 320 (444)
T 3if2_A 263 ----NWDNNTILCFSLSKI-GLPGMRTGIIVADAKVIEAVSAMNAVVNL--APTRFGAAIATPLV 320 (444)
T ss_dssp ----CCCTTEEEEEESTTT-TCGGGCCEEEECCHHHHHHHHHHHHHHHS--SCCCHHHHHHHHHH
T ss_pred ----cCCCCEEEEechhhc-cCCCCceEEEEECHHHHHHHHHHHHhccC--CCChHHHHHHHHHH
Confidence 113568999999996 6666 9999999999988765433222 23344444444443
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.4e-10 Score=115.75 Aligned_cols=129 Identities=16% Similarity=0.142 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-c
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-T 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~ 348 (430)
+++|++.+++. +.++++|+++.+.+++|.+.+ +++|+++|++||++||+||+|+...++..+... .
T Consensus 156 ~~~l~~~l~~~----------~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 225 (394)
T 2ay1_A 156 FEGMKADLAAA----------KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGT 225 (394)
T ss_dssp HHHHHHHHHTC----------CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHhC----------CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHH
Confidence 67788877641 113678888999999999876 678899999999999999999865443100111 1
Q ss_pred eecCCCCCCccEEEeCccchhcccc---ceeec---CHHHHHHHHhc---CCcccccCCCcHHHHHHHHHHHHH
Q psy2206 349 EYFGIDPREVDILMGTYTKSFGSMG---GYVAG---SKSTIDYIRAN---SHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 349 e~~g~~~~~~dIv~~TlSKa~G~~G---G~v~g---s~~li~~l~~~---~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
..+... .+.+|+++||||++|++| ||+++ ++++++.+... .....+++ .+++.++++.++|+.
T Consensus 226 ~~~~~~-~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~a~~~~l~~ 297 (394)
T 2ay1_A 226 RLIASR-IPEVLIAASCSKNFGIYRERTGCLLALCADAATRELAQGAMAFLNRQTYSF-PPFHGAKIVSTVLTT 297 (394)
T ss_dssp HHHHHH-CSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHTTTSS-CCCHHHHHHHHHHHS
T ss_pred HHHhhc-CCCEEEEEeccCCCcCcCCccceEEEEeCCHHHHHHHHHHHHHHHhhhcCC-CChHHHHHHHHHhcC
Confidence 111111 123688999999999888 99987 67655433221 01112333 345555556666653
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.02 E-value=2.1e-10 Score=114.34 Aligned_cols=126 Identities=17% Similarity=0.146 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCC--CCCcc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGP--TGRGV 347 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~--~GrG~ 347 (430)
+++|++.+++. +.++++|++..+.+++|.+.+ +++|+++|++||++||+||+|+...++. .+..+
T Consensus 159 ~~~l~~~l~~~----------~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 228 (396)
T 2q7w_A 159 FDALINSLNEA----------QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGL 228 (396)
T ss_dssp HHHHHHHHTTC----------CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHH
T ss_pred HHHHHHHHHhC----------CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHH
Confidence 57777777541 113678888999999999876 6789999999999999999997654431 11111
Q ss_pred ceecCCCCCCccEEEeCccchhcccc---ceeec---CH----HHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 348 TEYFGIDPREVDILMGTYTKSFGSMG---GYVAG---SK----STIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 348 ~e~~g~~~~~~dIv~~TlSKa~G~~G---G~v~g---s~----~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
..+... .+.+|+++||||++|++| ||+++ ++ ++++.+....+ ..+++ .+++.++++.++|+
T Consensus 229 -~~~~~~-~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~a~~~~l~ 299 (396)
T 2q7w_A 229 -RAFAAM-HKELIVASSYSXNFGLYNERVGACTLVAADSETVDRAFSQMKAAIR-ANYSN-PPAHGASVVATILS 299 (396)
T ss_dssp -HHHHHH-CSCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHHHHHHHHHH-TTTSS-CCHHHHHHHHHHHT
T ss_pred -HHHHhc-CCcEEEEEeccccccccccccceEEEEcCCHHHHHHHHHHHHHHHh-hccCC-CCcHHHHHHHHHhc
Confidence 112111 134689999999999888 99886 55 45555553221 12332 35666666666664
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.6e-10 Score=114.69 Aligned_cols=123 Identities=13% Similarity=0.059 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEE-EcCccCCCCcccCHH---HHHHHHH-hcCcEEEEeccccccccCCCCCcc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIV-VEGIFSMDGSIVRLP---EIVRLKN-KYKAYLYVDEAHSIGALGPTGRGV 347 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi-~E~v~sm~G~i~~L~---~I~~La~-~y~~~LivDEAh~~G~lG~~GrG~ 347 (430)
+++|++++++. ++++|+ +..+.+++|.+.+.+ +|+++|+ +||++||+||+|+.+-++..|...
T Consensus 167 ~~~l~~~l~~~------------~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~ 234 (422)
T 3d6k_A 167 MGVVRELVKDP------------QVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIV 234 (422)
T ss_dssp HHHHHHHHTST------------TEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCC
T ss_pred HHHHHHHHhcC------------CCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCC
Confidence 56777776431 344555 788999999999865 7888888 999999999999853344333221
Q ss_pred cee------cCCCCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 348 TEY------FGIDPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 348 ~e~------~g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
... .+. .+.+|+++||||+ +++| ||+++++++++.+...... ++.+.+++..+++.++|+
T Consensus 235 ~~~~~~~~~~~~--~~~~i~~~S~SK~-~~~GlriG~~~~~~~l~~~l~~~~~~--~~~~~~~~~q~a~~~~l~ 303 (422)
T 3d6k_A 235 HNVIEFAQAAGN--PNRFWFMSSTSKI-THAGSGVSFFASSKENIEWYASHANV--RGIGPNKLNQLAHAQFFG 303 (422)
T ss_dssp CCHHHHHHHTTC--TTCEEEEEESTTT-SCTTSSCEEEECCHHHHHHHHHHHHH--HCSCCCHHHHHHHHHHHC
T ss_pred cChhhHhhccCC--CCcEEEEcChhhh-cCcccceEEEEeCHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHh
Confidence 111 122 3468999999998 6666 9999999999988864433 233345565555555553
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-10 Score=114.34 Aligned_cols=103 Identities=12% Similarity=0.110 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCC--Ccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTG--RGV 347 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~G--rG~ 347 (430)
+++|++.|++. ..++++|++..+.+++|.+.+ +++|+++|++||++||+||+|+...++..+ ..+
T Consensus 160 ~~~l~~~l~~~----------~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~ 229 (397)
T 3fsl_A 160 FNDLLATLKTL----------QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAI 229 (397)
T ss_dssp HHHHHHHHTTC----------CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHH
T ss_pred HHHHHHHHHhC----------CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHH
Confidence 67788877642 124678999999999999865 679999999999999999999876665211 122
Q ss_pred ceecCCCCCCccEEEeCccchhcccc---ceee---cCHHHHHHHH
Q psy2206 348 TEYFGIDPREVDILMGTYTKSFGSMG---GYVA---GSKSTIDYIR 387 (430)
Q Consensus 348 ~e~~g~~~~~~dIv~~TlSKa~G~~G---G~v~---gs~~li~~l~ 387 (430)
....+. .+.+|+++||||++|++| ||++ .++++++.+.
T Consensus 230 ~~~~~~--~~~~i~~~S~SK~~~~~G~riG~~~~~~~~~~~~~~~~ 273 (397)
T 3fsl_A 230 RAIASA--GLPALVSNSFSKIFSLYGERVGGLSVMCEDAEAAGRVL 273 (397)
T ss_dssp HHHHHT--TCCEEEEEECTTTTTCGGGCCEEEEEECSSHHHHHHHH
T ss_pred HHHHhc--CCCEEEEecccccccCcCCCeeEEEEecCCHHHHHHHH
Confidence 222122 245799999999999888 9985 4567666443
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-09 Score=106.64 Aligned_cols=110 Identities=15% Similarity=0.112 Sum_probs=82.6
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcC-cEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYK-AYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG- 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~-~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G- 373 (430)
++++|+++.+.+++|.+.|+++|.++++.++ .+||+||+|+... ..+.......+. .+.+|+++||||++|++|
T Consensus 129 ~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~--~~~~~~~~~~~~--~~~~i~~~S~sK~~~~~G~ 204 (350)
T 3fkd_A 129 NMDFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFT--TEEVIRPADIKG--RKNLVMVYSFSHAYGIPGL 204 (350)
T ss_dssp TCSEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSC--SSCCCCGGGGTT--CSSEEEEEESHHHHSCGGG
T ss_pred CCCEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhc--cCcchhhHHhhc--CCCEEEEecCchhccCcch
Confidence 3456777899999999999999999998876 7999999997543 333322222222 345799999999999887
Q ss_pred --ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 374 --GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 374 --G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
||+++++++++.++..... .+++++.++++.++|+.
T Consensus 205 r~G~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~ 242 (350)
T 3fkd_A 205 RIGYIVANKDFMKRVAAFSTP----WAVNALAIEAAKFILIH 242 (350)
T ss_dssp CCEEEECCHHHHHHHHTTCCT----TCSCHHHHHHHHHHHHC
T ss_pred heEeEEeCHHHHHHHHHhCCC----CCCCHHHHHHHHHHHhC
Confidence 9999999999999875532 24677777777777764
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.7e-10 Score=114.42 Aligned_cols=124 Identities=10% Similarity=0.010 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEE-cCccCCCCcccCHH---HHHHHH-HhcCcEEEEeccccccccCCCCCcc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVV-EGIFSMDGSIVRLP---EIVRLK-NKYKAYLYVDEAHSIGALGPTGRGV 347 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~-E~v~sm~G~i~~L~---~I~~La-~~y~~~LivDEAh~~G~lG~~GrG~ 347 (430)
+++|+++++. .++++|++ ..+.+++|.+.|.+ +|+++| ++||++||+||+|+...|+..+...
T Consensus 169 ~~~l~~~l~~------------~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~~~~~~~~ 236 (427)
T 3ppl_A 169 MDAVEELVKN------------PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTLTDEFPEV 236 (427)
T ss_dssp HHHHHHHTTS------------TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCC
T ss_pred HHHHHHHHhc------------CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCcccccCCCCCCc
Confidence 5667776632 13455654 47899999999866 888888 9999999999999876676544322
Q ss_pred ceecCC----CCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 348 TEYFGI----DPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 348 ~e~~g~----~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
...+.+ ...+.+|+++||||+ +++| ||+++++++++.+...... .+...+++..+++.+++
T Consensus 237 ~~~~~~~~~~~~~~~~i~~~S~SK~-~~~G~r~G~~~~~~~l~~~~~~~~~~--~~~~~~~~~q~~~~~~l 304 (427)
T 3ppl_A 237 IDIVGLGEAAGNPNRFWAFTSTSKI-TLAGAGVSFFLTSAENRKWYTGHAGI--RGIGPNKVNQLAHARYF 304 (427)
T ss_dssp CCHHHHHHHTTCTTSEEEEEESTTT-SCTTSSCEEEECCHHHHHHHHHHHHH--HCSCCCHHHHHHHHHHH
T ss_pred cchhhhhhccCCCCcEEEEechhhc-cCcCccEEEEEcCHHHHHHHHHHhhc--ccCCCCHHHHHHHHHHH
Confidence 222211 113568999999999 5556 9999999999988764322 22234444444444443
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-10 Score=117.21 Aligned_cols=112 Identities=15% Similarity=0.104 Sum_probs=78.0
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcC----------cEEEEeccccccccCCCCCccceecCCCCCCccEEEeCc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYK----------AYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTY 365 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~----------~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~Tl 365 (430)
++++|+++++.+++|.+.|+++|.++|++|+ ++||+||+|+.|.. ...+. . ...|+++.|+
T Consensus 175 ~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~---~~~~~-~-----~~~d~~~~s~ 245 (432)
T 3a9z_A 175 TTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKR---RVDVE-D-----LGVDFLTIVG 245 (432)
T ss_dssp TEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTS---CCCHH-H-----HCCSEEEEEG
T ss_pred CceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCc---ccChh-h-----cCCCEEEEeh
Confidence 4678999999999999999999999999999 99999999976421 11111 1 1347899999
Q ss_pred cchhccccceeecCHHH-HHHHHhcCC-----cccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 366 TKSFGSMGGYVAGSKST-IDYIRANSH-----VRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 366 SKa~G~~GG~v~gs~~l-i~~l~~~~~-----~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
||.+|...||+++++++ +..++.... ......+.++..++++.++++.+.+
T Consensus 246 ~K~~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~ 302 (432)
T 3a9z_A 246 HKFYGPRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSE 302 (432)
T ss_dssp GGTTCCSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHH
T ss_pred hHhcCCcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHh
Confidence 99998667999988765 222211000 0011234566666677778887643
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.4e-10 Score=112.61 Aligned_cols=129 Identities=9% Similarity=0.086 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCc-cCCCCcccCHH---HHHHHHH------hcCcEEEEeccccccccCC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGI-FSMDGSIVRLP---EIVRLKN------KYKAYLYVDEAHSIGALGP 342 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v-~sm~G~i~~L~---~I~~La~------~y~~~LivDEAh~~G~lG~ 342 (430)
+++|++.+++... +..+.+|+++++ .+++|.+.|.+ +|+++|+ +||++||+||+|.. ++.
T Consensus 164 ~~~l~~~l~~~~~--------~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~--~~~ 233 (418)
T 3rq1_A 164 HEAFQNRVNELAA--------KQTNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLD--YSG 233 (418)
T ss_dssp HHHHHHHHHHHHH--------HCSEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGG--GSS
T ss_pred HHHHHHHHHHhhc--------cCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccc--ccC
Confidence 6788888875310 013557888888 99999999855 4555555 89999999999953 223
Q ss_pred CCC---cccee-cCCCCCCccEEEeCccchhcccc---ceeec---CHHHHHHHHhcCCcccc--cCCCcHHHHHHHHHH
Q psy2206 343 TGR---GVTEY-FGIDPREVDILMGTYTKSFGSMG---GYVAG---SKSTIDYIRANSHVRSY--ATSMPPPVAMQILTS 410 (430)
Q Consensus 343 ~Gr---G~~e~-~g~~~~~~dIv~~TlSKa~G~~G---G~v~g---s~~li~~l~~~~~~~~~--s~s~~P~~~aaalaa 410 (430)
+|. .+... .++.++-+.|+++||||++|++| ||+++ ++++++.+......... .+.++++.++++.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 313 (418)
T 3rq1_A 234 EKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANI 313 (418)
T ss_dssp CHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHH
Confidence 332 22222 22322111388899999999888 99998 99999988764311111 123455555555554
Q ss_pred H
Q psy2206 411 M 411 (430)
Q Consensus 411 L 411 (430)
|
T Consensus 314 l 314 (418)
T 3rq1_A 314 V 314 (418)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=9.7e-10 Score=114.45 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++.+. ++++|++ ++.++. .+.|+++|+++|++||++|++||||..|.... |... ..
T Consensus 182 ~d~le~~i~~~------------~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~---~~~~-~p 243 (483)
T 1rv3_A 182 YDRLEENARLF------------HPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVA---GVVP-SP 243 (483)
T ss_dssp HHHHHHHHHHH------------CCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHH---TSSC-CG
T ss_pred HHHHHHHHhhc------------CCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhccccc---CCCC-CC
Confidence 78899988742 2446777 777776 88999999999999999999999998776421 1111 11
Q ss_pred CCCCCccEEEeCccchh-ccccceeecCHH---------------HHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSF-GSMGGYVAGSKS---------------TIDYIRANSHVRSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~-G~~GG~v~gs~~---------------li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
+ ..+||++.|++|+| |..||+++++++ +.+.+.....+.. .++++...+++..++++.+.
T Consensus 244 ~--~~~div~~s~~K~l~GprgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~-~g~~~~~~iaal~~Al~~~~ 319 (483)
T 1rv3_A 244 F--EHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGL-QGGPHNHAIAGVAVALKQAM 319 (483)
T ss_dssp G--GTCSEEEEESSGGGCCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTT-CCSCCHHHHHHHHHHHHHHT
T ss_pred C--CCCcEEEecCcccCCCCCceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcc-cCCccHHHHHHHHHHHHHHh
Confidence 1 14689999999998 667899988764 4444443222222 33344455555556776654
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=5.3e-10 Score=113.18 Aligned_cols=101 Identities=15% Similarity=0.121 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC--CCcc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT--GRGV 347 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~--GrG~ 347 (430)
+++|++.|++. +.++++|+++.+.+++|.+.+ +++|+++|++||+++|+||+|+...++.. ...+
T Consensus 182 ~~~l~~~l~~~----------~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~ 251 (420)
T 4f4e_A 182 FDGMLAALNGY----------EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAV 251 (420)
T ss_dssp HHHHHHHHTTC----------CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHH
T ss_pred HHHHHHHHHhC----------CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHH
Confidence 67788877642 125678999999999999865 77999999999999999999976655421 1122
Q ss_pred ceecCCCCCCccEEEeCccchhcccc---ceee---cCHHHHHH
Q psy2206 348 TEYFGIDPREVDILMGTYTKSFGSMG---GYVA---GSKSTIDY 385 (430)
Q Consensus 348 ~e~~g~~~~~~dIv~~TlSKa~G~~G---G~v~---gs~~li~~ 385 (430)
....+. .+.+|+++||||+||++| ||++ .++++++.
T Consensus 252 ~~~~~~--~~~~i~~~S~SK~~~~~G~RiG~~~~~~~~~~~~~~ 293 (420)
T 4f4e_A 252 RLFAAA--NLNVFVSSSFSKSFSLYGERVGALSIITDSKDEAAR 293 (420)
T ss_dssp HHHHHT--TCCEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHH
T ss_pred HHHHhc--CCCEEEEEeCCccCcCcCCCcEEEEEEcCCHHHHHH
Confidence 222222 245799999999999888 8864 36776654
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=4.8e-10 Score=109.43 Aligned_cols=89 Identities=20% Similarity=0.213 Sum_probs=63.9
Q ss_pred eEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 297 KILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+++|+++++ +++|.+.| +++|+++|++||++||+||+|....+|..+... ...++. ...|+++.|++|..+..|
T Consensus 146 ~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~-~~~d~~~~s~~K~g~~~~ 222 (359)
T 1svv_A 146 PKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDL-TLADIA-RLTDMFYIGATKAGGMFG 222 (359)
T ss_dssp EEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCC-CHHHHH-HHCSEEEEECTTTTCSSC
T ss_pred ceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcch-hhhhhh-hcCCEEEEecccCCCCCc
Confidence 677888888 78999998 999999999999999999999321123322111 111110 134788999999866667
Q ss_pred -ceeecCHHHHHHHHh
Q psy2206 374 -GYVAGSKSTIDYIRA 388 (430)
Q Consensus 374 -G~v~gs~~li~~l~~ 388 (430)
|+++.++++++.++.
T Consensus 223 ~g~l~~~~~~~~~~~~ 238 (359)
T 1svv_A 223 EALIILNDALKPNARH 238 (359)
T ss_dssp EEEEECSGGGCTTHHH
T ss_pred eEEEEEcccHHHHHHH
Confidence 889889998876654
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.98 E-value=2.3e-09 Score=104.19 Aligned_cols=104 Identities=14% Similarity=0.202 Sum_probs=77.3
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc---
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG--- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G--- 373 (430)
+++|++..+.+++|.+.|++++.++|+++++ +|+||+|+. ++..+... .. ..+.+|+++||||++|++|
T Consensus 136 ~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~--~~~~~~~~---~~--~~~~~i~~~S~sK~~g~~G~r~ 207 (337)
T 3p1t_A 136 DDCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVD--YSSFRARG---LA--YGENELVFRSFSKSYGLAGLRL 207 (337)
T ss_dssp TEEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGG--GSSCSSSC---CC--CBTTEEEEEESSSTTCCTTTCC
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChh--hccccccc---cc--cCCCEEEEeeCchhccCcchhe
Confidence 4688899999999999999999999999997 667999974 33222111 11 1345899999999999888
Q ss_pred ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 374 GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 374 G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
||+++++++++.++.... ....+++.++++.++|+
T Consensus 208 G~~~~~~~~~~~l~~~~~----~~~~~~~~~~a~~~~l~ 242 (337)
T 3p1t_A 208 GALFGPSELIAAMKRKQW----FCNVGTLDLHALEAALD 242 (337)
T ss_dssp EEEECCHHHHHHHHTTSC----TTCSCHHHHHHHHHHHT
T ss_pred EEEEeCHHHHHHHHhhcC----CCCCCHHHHHHHHHHhC
Confidence 999999999999887432 22345555555555554
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=98.98 E-value=7.8e-10 Score=113.06 Aligned_cols=106 Identities=18% Similarity=0.143 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCC-CcccC---HHHHHHHHHhcCcEEEEeccccc-ccc-------
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMD-GSIVR---LPEIVRLKNKYKAYLYVDEAHSI-GAL------- 340 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~-G~i~~---L~~I~~La~~y~~~LivDEAh~~-G~l------- 340 (430)
+++||++|++.. +.++++|+++++.+++ |.+.+ |++|+++|++||++||+||+|.. +.+
T Consensus 169 ~~~le~~i~~~~---------~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~ 239 (467)
T 1ax4_A 169 IKKLKENIAQHG---------ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDP 239 (467)
T ss_dssp HHHHHHHHHHHC---------GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCG
T ss_pred HHHHHHHHHhcC---------CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhcccccc
Confidence 788998887530 1257899999999998 77654 88999999999999999999875 332
Q ss_pred CCCCCccceec-CCCCCCccEEEeCccchhccc-cceeecC-H-HHHHHHHh
Q psy2206 341 GPTGRGVTEYF-GIDPREVDILMGTYTKSFGSM-GGYVAGS-K-STIDYIRA 388 (430)
Q Consensus 341 G~~GrG~~e~~-g~~~~~~dIv~~TlSKa~G~~-GG~v~gs-~-~li~~l~~ 388 (430)
+..|..+.+.. ++. ..+|+++.|+||++|++ ||+++++ + ++++.+..
T Consensus 240 ~~~~~~~~~~~~~~~-~~~d~~~~s~sK~~g~~~Gg~~~~~d~~~l~~~~~~ 290 (467)
T 1ax4_A 240 KYKNATIKEVIFDMY-KYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQ 290 (467)
T ss_dssp GGTTCCHHHHHHHHG-GGCSEEEEETTSTTCCSSCEEEEESSCHHHHHHHHH
T ss_pred ccCCCchhhhhhhhc-cccceEEEeccccCCCCcceEEEeCCHHHHHHHHHh
Confidence 22222211110 000 13578889999999987 8888887 7 88877654
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=98.98 E-value=7.5e-10 Score=113.00 Aligned_cols=139 Identities=18% Similarity=0.152 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhCCCCCCC-C--CHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEE
Q psy2206 253 TERSKESVKQSGCALCSP-S--APSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYL 329 (430)
Q Consensus 253 ~~a~~~ai~~yG~g~~~s-r--~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~L 329 (430)
...+...+..+|....-. . .+++|+++|++ ++++|+++++.+++|.+.|+++|.++|++||++|
T Consensus 111 ~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~i~~-------------~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~l 177 (421)
T 2ctz_A 111 FNQFKVTLKRLGIEVRFTSREERPEEFLALTDE-------------KTRAWWVESIGNPALNIPDLEALAQAAREKGVAL 177 (421)
T ss_dssp HHHHHTHHHHTTCEEEECCTTCCHHHHHHHCCT-------------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHcCCEEEEECCCCCHHHHHHhhcc-------------CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEE
Confidence 333433345666533222 1 35666666542 4678999999999999999999999999999999
Q ss_pred EEeccc-cccccCCCCCccceecCCCCCCccEEEeCccchhccc----cceeecC--HHH----HHHHHhc---------
Q psy2206 330 YVDEAH-SIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM----GGYVAGS--KST----IDYIRAN--------- 389 (430)
Q Consensus 330 ivDEAh-~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~----GG~v~gs--~~l----i~~l~~~--------- 389 (430)
|+||+| ++|..+ ..+ +. ..||++.|++|.++.+ ||+++.+ +++ ++.++..
T Consensus 178 ivD~~~~~~g~~~---~~~----~~---~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~ 247 (421)
T 2ctz_A 178 IVDNTFGMGGYLL---RPL----AW---GAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRL 247 (421)
T ss_dssp EEECGGGGGGTSC---CGG----GG---TCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCH
T ss_pred EEECCcccccccC---Ccc----cc---CCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhh
Confidence 999999 776422 221 21 3589999999999863 4566652 222 2223210
Q ss_pred ---------------CCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 390 ---------------SHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 390 ---------------~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.....++..++|..+++++..++.+
T Consensus 248 ~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l 287 (421)
T 2ctz_A 248 TEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLGMETL 287 (421)
T ss_dssp HHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHTTH
T ss_pred hhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcCcchH
Confidence 0001245578899888888877765
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.3e-09 Score=109.23 Aligned_cols=109 Identities=18% Similarity=0.114 Sum_probs=77.0
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
++++|++..+.+++|.+.| +++|+++|++||++||+||+|+..+-+....+.. .. ..+.+|+++|||| ++++
T Consensus 180 ~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~--~~--~~~~~i~~~s~sK-~~~~ 254 (417)
T 3g7q_A 180 ETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEAR--PL--WNPNIILCMSLSK-LGLP 254 (417)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCC--CC--CCTTEEEEEESGG-GTCT
T ss_pred CceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccc--cC--CCCCEEEEEechh-ccCC
Confidence 4678888899999999998 9999999999999999999997532111111111 11 1356899999999 6777
Q ss_pred c---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHH
Q psy2206 373 G---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSM 411 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL 411 (430)
| ||+++++++++.++.....+ +...+++.++++.+.+
T Consensus 255 G~r~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l 294 (417)
T 3g7q_A 255 GSRCGIIIANDKTITAIANMNGII--SLAPGGMGPAMMCEMI 294 (417)
T ss_dssp TSCCEEEECCHHHHHHHHHHHHHH--CCCCCSHHHHHHHHHH
T ss_pred CcceEEEEeCHHHHHHHHHhhcce--eeCCCcHHHHHHHHHH
Confidence 7 99999999999887644332 2233444444444444
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=98.98 E-value=7.5e-10 Score=111.72 Aligned_cols=127 Identities=13% Similarity=0.108 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEE-EcCccCCCCcccCHH---HHHHHH-HhcCcEEEEeccccccccCC-CCCc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIV-VEGIFSMDGSIVRLP---EIVRLK-NKYKAYLYVDEAHSIGALGP-TGRG 346 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi-~E~v~sm~G~i~~L~---~I~~La-~~y~~~LivDEAh~~G~lG~-~GrG 346 (430)
+++|++++++. .++++|+ +..+.+++|.+.+.+ +|+++| ++||++||+||+|+...++. .+..
T Consensus 160 ~~~l~~~l~~~-----------~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~ 228 (423)
T 3ez1_A 160 VDAVERLAGTD-----------PSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAE 228 (423)
T ss_dssp HHHHHHHHHSC-----------TTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCC
T ss_pred HHHHHHHHhhC-----------CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCC
Confidence 67788887521 1355565 558899999999866 888888 89999999999998655543 2221
Q ss_pred cceecCC----CCCCccEEEeCccchhcccc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 347 VTEYFGI----DPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 347 ~~e~~g~----~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
....+.+ ...+.+|+++||||+ +++| ||+++++++++.++..... .+...+++..+++.++++.
T Consensus 229 ~~~~~~~~~~~~~~~~~i~~~S~sK~-~~~G~r~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~~~~l~~ 299 (423)
T 3ez1_A 229 PVNFVVLARDAGYPDRAFVFASTSKI-TFAGAGLGFVASSEDNIRWLSKYLGA--QSIGPNKVEQARHVKFLTE 299 (423)
T ss_dssp CCCHHHHHHHHTCTTSEEEEEESTTT-SCSSSSCEEEEECHHHHHHHHHHHHH--SCSCCCHHHHHHHHHHHHH
T ss_pred CcchhhhhhccCCCCeEEEEeCchhh-ccCCcceEEEEeCHHHHHHHHHHHhh--hccCCCHHHHHHHHHHHHh
Confidence 1111111 113568999999997 4445 9999999999988764422 2233455555555555543
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-09 Score=106.01 Aligned_cols=106 Identities=17% Similarity=0.171 Sum_probs=79.0
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc---
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG--- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G--- 373 (430)
+++|++..+.+++|.+.|.+++.++++..| ++|+||+|+....+ ......+. .+.+|+++||||++|++|
T Consensus 139 ~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~----~~~~~~~~--~~~~i~~~s~sK~~g~~G~r~ 211 (335)
T 1uu1_A 139 GDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGE----SYVDFLKK--YENLAVIRTFSKAFSLAAQRV 211 (335)
T ss_dssp TEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCC----CCGGGGGT--CSSEEEEEESTTTTTCGGGCC
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcch----hHHHHhhh--CCCEEEEecchhhcCCcccCe
Confidence 456666667899999999999999999889 99999999843211 22222222 245799999999999888
Q ss_pred ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 374 GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 374 G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
||+++++++++.++..... + +.+++.++++.++|+.
T Consensus 212 G~~~~~~~~~~~l~~~~~~--~--~~~~~~~~~~~~~l~~ 247 (335)
T 1uu1_A 212 GYVVASEKFIDAYNRVRLP--F--NVSYVSQMFAKVALDH 247 (335)
T ss_dssp EEEEECHHHHHHHHHHSCT--T--CSCHHHHHHHHHHHHT
T ss_pred EEEEeCHHHHHHHHHhcCC--C--CcCHHHHHHHHHHhCC
Confidence 9999999999988875433 2 4566666667777754
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1e-09 Score=114.57 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEecccccccc---CCCCCccce
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGAL---GPTGRGVTE 349 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~l---G~~GrG~~e 349 (430)
+++|+++|++ ++++|+++.+.+++|.+.|+++|.++|++||++|++||||+.+++ +..|....
T Consensus 229 ~~~Le~~i~~-------------~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~~- 294 (514)
T 3mad_A 229 VAAMREAITP-------------NTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVP- 294 (514)
T ss_dssp HHHHHHHCCT-------------TEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCCC-
T ss_pred HHHHHHHhcc-------------CCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCCC-
Confidence 5777776643 467899999999999999999999999999999999999986654 22232111
Q ss_pred ecCCCCCCccEEEeCccchh-cccc-ceeecCHHHHH
Q psy2206 350 YFGIDPREVDILMGTYTKSF-GSMG-GYVAGSKSTID 384 (430)
Q Consensus 350 ~~g~~~~~~dIv~~TlSKa~-G~~G-G~v~gs~~li~ 384 (430)
.+......+|+++.|++|.+ +..| |+++.+.+.+.
T Consensus 295 ~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~ 331 (514)
T 3mad_A 295 PFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLL 331 (514)
T ss_dssp CCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHH
T ss_pred cccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHh
Confidence 12222245799999999985 4333 77766655443
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.8e-09 Score=109.06 Aligned_cols=110 Identities=13% Similarity=0.153 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC--CCcc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT--GRGV 347 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~--GrG~ 347 (430)
+++|+++|++... ..++++|++..+.+++|.+.+ +++|+++|++||++||+||+|+..+++.. ...+
T Consensus 220 ~~~le~~l~~~~~--------~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~ 291 (498)
T 3ihj_A 220 VNELRRAVQEAKD--------HCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSF 291 (498)
T ss_dssp HHHHHHHHHHHTT--------TSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCH
T ss_pred HHHHHHHHHhhhc--------cCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCH
Confidence 6889998876410 013556666699999999976 78899999999999999999998888642 1111
Q ss_pred ceec-CCC----CCCccEEEeCccchh-cccc---ceee---cCHHHHHHHHhcC
Q psy2206 348 TEYF-GID----PREVDILMGTYTKSF-GSMG---GYVA---GSKSTIDYIRANS 390 (430)
Q Consensus 348 ~e~~-g~~----~~~~dIv~~TlSKa~-G~~G---G~v~---gs~~li~~l~~~~ 390 (430)
.... .+. .....|+++||||+| |.+| ||++ +++++++.+....
T Consensus 292 ~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l~~~l~~~~ 346 (498)
T 3ihj_A 292 KKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEIKGQLVKLL 346 (498)
T ss_dssp HHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHHHHHHHHHH
Confidence 1110 000 011247899999999 6555 9987 7999999888753
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.4e-09 Score=106.82 Aligned_cols=89 Identities=16% Similarity=0.132 Sum_probs=63.8
Q ss_pred ceEEEEEcCccCCC-CcccCHHH---HHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc
Q psy2206 296 RKILIVVEGIFSMD-GSIVRLPE---IVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~-G~i~~L~~---I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~ 371 (430)
++++|+++++.+++ |.+.|+++ |+++|++||++||+||+|..+.....|...... . ...|+++.||||+++.
T Consensus 137 ~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~-~---~~~d~~~~s~sK~~~~ 212 (359)
T 3pj0_A 137 PVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEI-C---ALFDSVYVSFYKGIGG 212 (359)
T ss_dssp CCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHH-H---TTCSEEEEESSSTTCC
T ss_pred CceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHh-h---ccCCEEEEeccccCCC
Confidence 35578888887776 78877555 599999999999999998755422112211111 1 2357888899999975
Q ss_pred c-cceeecCHHHHHHHHh
Q psy2206 372 M-GGYVAGSKSTIDYIRA 388 (430)
Q Consensus 372 ~-GG~v~gs~~li~~l~~ 388 (430)
+ ||++++++++++.++.
T Consensus 213 ~~gg~~~~~~~l~~~~~~ 230 (359)
T 3pj0_A 213 IAGAILAGNDDFVQEAKI 230 (359)
T ss_dssp SSCEEEEECHHHHHHHHH
T ss_pred cceEEEECCHHHHHHHHH
Confidence 4 5688899999998875
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.7e-09 Score=110.51 Aligned_cols=104 Identities=19% Similarity=0.179 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCC-CcccC---HHHHHHHHHhcCcEEEEeccccc-ccc-------
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMD-GSIVR---LPEIVRLKNKYKAYLYVDEAHSI-GAL------- 340 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~-G~i~~---L~~I~~La~~y~~~LivDEAh~~-G~l------- 340 (430)
+++||++|++.. +.++++|+++++.+++ |.+.+ |++|+++|++||++||+|++|+. +.+
T Consensus 169 ~~~Le~~i~~~~---------~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~ 239 (467)
T 2oqx_A 169 LEGLERGIEEVG---------PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREA 239 (467)
T ss_dssp HHHHHHHHHHHC---------GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCG
T ss_pred HHHHHHHHHhcC---------CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccc
Confidence 788998887520 0146689999998886 77654 89999999999999999999876 443
Q ss_pred CCCCCccceecCCC-CCCccEEEeCccchhccc-cceeecCHH-HHHHH
Q psy2206 341 GPTGRGVTEYFGID-PREVDILMGTYTKSFGSM-GGYVAGSKS-TIDYI 386 (430)
Q Consensus 341 G~~GrG~~e~~g~~-~~~~dIv~~TlSKa~G~~-GG~v~gs~~-li~~l 386 (430)
+..|..... ++.. ....|+++.|+||++|++ ||+++++++ +++.+
T Consensus 240 ~~~g~~~~~-~~~~~~~~~d~~~~s~sK~~g~~~Gg~~~~~~~~~~~~~ 287 (467)
T 2oqx_A 240 EYKDWTIEQ-ITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVY 287 (467)
T ss_dssp GGTTSCHHH-HHHHHGGGCSEEEEESSSTTCCSSCEEEEECSGGGHHHH
T ss_pred cccCccHHH-HhhhhhccCCeEEEecccccCCCCceEEEecChhHHHHH
Confidence 333332211 1100 012467789999999977 899888766 55443
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=6.4e-10 Score=111.29 Aligned_cols=98 Identities=18% Similarity=0.200 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCC--C-c
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTG--R-G 346 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~G--r-G 346 (430)
+++|++.|++. ..++++|++..+.+++|.+.+ +++|+++|++||+++|+||+|....++... . .
T Consensus 162 ~~~l~~~l~~~----------~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~ 231 (401)
T 7aat_A 162 FTGAMEDISKI----------PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWA 231 (401)
T ss_dssp HHHHHHHHTTS----------CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHH
T ss_pred HHHHHHHHHhC----------CCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHH
Confidence 45566666541 124678999999999997655 889999999999999999999765554210 0 1
Q ss_pred cceecCCCCCCccEEEeCccchhcccc---ceeec---CHHH
Q psy2206 347 VTEYFGIDPREVDILMGTYTKSFGSMG---GYVAG---SKST 382 (430)
Q Consensus 347 ~~e~~g~~~~~~dIv~~TlSKa~G~~G---G~v~g---s~~l 382 (430)
+...... .+.+|+++||||+||++| ||+++ +++.
T Consensus 232 ~~~~~~~--~~~~i~~~S~sK~~~~~G~RiG~l~~~~~~~~~ 271 (401)
T 7aat_A 232 LRHFIEQ--GIDVVLSQSYAKNMGLYGERAGAFTVICRDAEE 271 (401)
T ss_dssp HHHHHHT--TCCCEEEEECTTTSCCGGGCEEEEEEECSSHHH
T ss_pred HHHHHhc--CCcEEEEecCCcccccccCceEEEEEEeCCHHH
Confidence 1111122 235789999999999998 99654 6763
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.9e-09 Score=105.33 Aligned_cols=114 Identities=20% Similarity=0.246 Sum_probs=74.4
Q ss_pred ceEEEEEcCccCCC-CcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc
Q psy2206 296 RKILIVVEGIFSMD-GSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~-G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~ 371 (430)
++++|+++++.+++ |.+.| +++|+++|++||++|++||+|..+.++..+..... +. ...|+++.|+||++|+
T Consensus 132 ~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~-~~---~~~d~~~~s~sK~l~~ 207 (347)
T 1jg8_A 132 RTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKE-YA---GYADSVMFCLSKGLCA 207 (347)
T ss_dssp CEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHH-HH---HTCSEEEEESSSTTCC
T ss_pred CceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHH-hc---ccccEEEEecccccCC
Confidence 46789999999999 99876 57889999999999999999865322111211111 11 1346777899999985
Q ss_pred c-cceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 372 M-GGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 372 ~-GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
+ |+++++++++++.++.....+..+...++..++++..+++.
T Consensus 208 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 250 (347)
T 1jg8_A 208 PVGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALTK 250 (347)
T ss_dssp SSCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHHH
T ss_pred CceEEEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHH
Confidence 4 44778899998876542212111222344555555566654
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=98.88 E-value=3.5e-09 Score=111.09 Aligned_cols=122 Identities=17% Similarity=0.184 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEE-cCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVV-EGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~-E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
+++||+++++. ++++|++ .+.++ .+.|+++|+++|++||++|++|+||..|+++. |....
T Consensus 192 ~d~le~~l~~~------------~~klIi~~~s~~~---~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~---g~~~~- 252 (490)
T 2a7v_A 192 YNQLALTARLF------------RPRLIIAGTSAYA---RLIDYARMREVCDEVKAHLLADMAHISGLVAA---KVIPS- 252 (490)
T ss_dssp HHHHHHHHHHH------------CCSEEEECCSSCC---SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHT---TSSCC-
T ss_pred HHHHHHHHhhc------------CCcEEEEcCCCCC---CcccHHHHHHHHHHcCCEEEEccccccccccC---CcCCC-
Confidence 78999998753 1234554 44554 45689999999999999999999998886532 21110
Q ss_pred CCCCCCccEEEeCccchh-ccccceeecCHH---------------HHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHH
Q psy2206 352 GIDPREVDILMGTYTKSF-GSMGGYVAGSKS---------------TIDYIRANSHVRSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~-G~~GG~v~gs~~---------------li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
.+ ..+|+++.|+||++ |..||+++++++ +.+.++....+...+ ++++..+++..+|++.+.
T Consensus 253 ~~--~~aDiv~~S~hK~l~Gp~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qg-gp~~~~iaAla~Al~~~~ 329 (490)
T 2a7v_A 253 PF--KHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQG-GPHNHAIAAVAVALKQAC 329 (490)
T ss_dssp GG--GTCSEEEEESSGGGCSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCC-SCCHHHHHHHHHHHHHHH
T ss_pred CC--CCCCEEEECCcccCccccchheeeccchhcccccccchhhHHHHHHHHHHhcccCCC-CchHHHHHHHHHHHHHHh
Confidence 11 24699999999999 567899998764 556666543333323 345555555556666654
Q ss_pred c
Q psy2206 416 G 416 (430)
Q Consensus 416 ~ 416 (430)
.
T Consensus 330 ~ 330 (490)
T 2a7v_A 330 T 330 (490)
T ss_dssp S
T ss_pred h
Confidence 3
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.5e-09 Score=108.65 Aligned_cols=104 Identities=18% Similarity=0.233 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCC---CCc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPT---GRG 346 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~---GrG 346 (430)
+++|++.|++. +.++++|++..+.+++|.+.+ +++|+++|++||+++|+||+|....++.. ..+
T Consensus 189 ~e~l~~~l~~~----------~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~ 258 (448)
T 3meb_A 189 FSNTKKDIQSA----------PEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFA 258 (448)
T ss_dssp HHHHHHHHHHS----------CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHH
T ss_pred HHHHHHHHHhC----------CCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchh
Confidence 67888888752 124678899999999999877 66699999999999999999975444320 011
Q ss_pred cceecCCCCCCccEEEeCccchhcccc---cee--ec---------CH----HHHHHHHh
Q psy2206 347 VTEYFGIDPREVDILMGTYTKSFGSMG---GYV--AG---------SK----STIDYIRA 388 (430)
Q Consensus 347 ~~e~~g~~~~~~dIv~~TlSKa~G~~G---G~v--~g---------s~----~li~~l~~ 388 (430)
+...... ...+|+++||||+||++| ||+ ++ ++ ++++.+..
T Consensus 259 ~~~~~~~--~~~~i~~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~ 316 (448)
T 3meb_A 259 VRMFVDA--GVEVLVAQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTL 316 (448)
T ss_dssp HHHHHHT--TCCEEEEEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhc--CCcEEEEecccccCCCccccceeeeeeeccccccccCCHHHHHHHHHHHHH
Confidence 1111111 234688999999999988 986 44 45 66666654
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=8.5e-09 Score=108.18 Aligned_cols=111 Identities=20% Similarity=0.224 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccC-CCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALG-PTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG-~~GrG~~e~~ 351 (430)
+++||++|++....| ..+++|++..+.+++|.+.||++|.++|++||++|+||+||+.+++. +..+... .
T Consensus 232 ~~~Le~~i~~~~~~g-------~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~--~ 302 (511)
T 3vp6_A 232 PADFEAKILEAKQKG-------YVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKL--N 302 (511)
T ss_dssp HHHHHHHHHHHHHTT-------CEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGG--T
T ss_pred HHHHHHHHHHHHhcC-------CCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhc--c
Confidence 799999997643221 24678999999999999999999999999999999999999987752 2222111 1
Q ss_pred CCCCCCccEEEeCccchhccc---cceeecCHHHHHHHHhcCCccc
Q psy2206 352 GIDPREVDILMGTYTKSFGSM---GGYVAGSKSTIDYIRANSHVRS 394 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~~---GG~v~gs~~li~~l~~~~~~~~ 394 (430)
|+ ..+|+++.+.+|.++.+ |++++.++++++.+......++
T Consensus 303 g~--~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl 346 (511)
T 3vp6_A 303 GI--ERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYL 346 (511)
T ss_dssp TG--GGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTT
T ss_pred CC--ccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccc
Confidence 23 25699999999999754 2345556666666544344444
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=6.4e-09 Score=110.24 Aligned_cols=86 Identities=15% Similarity=0.155 Sum_probs=65.6
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHH--HhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLK--NKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La--~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++|++.++.+++|.+.+ +++|+++| ++||++||+||+|+....+ ...+.+. . .+.+|++.||||++|
T Consensus 245 ~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~--~~s~~~~---~-~~~~i~~~S~SK~~g 318 (546)
T 2zy4_A 245 AIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD--FQSLFAI---C-PENTLLVYSFSKYFG 318 (546)
T ss_dssp TEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT--CCCHHHH---C-GGGEEEEEESTTTTT
T ss_pred CCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc--CcCHHHh---C-CCCEEEEEeCccccC
Confidence 3556666699999999987 77788888 7899999999999854432 2333322 1 245899999999999
Q ss_pred ccc---ceeecCHH-HHHHHH
Q psy2206 371 SMG---GYVAGSKS-TIDYIR 387 (430)
Q Consensus 371 ~~G---G~v~gs~~-li~~l~ 387 (430)
++| ||++++++ +++.+.
T Consensus 319 ~~GlRiG~~~~~~~~l~~~l~ 339 (546)
T 2zy4_A 319 ATGWRLGVVAAHQQNVFDLAL 339 (546)
T ss_dssp CGGGCEEEEEEESSCHHHHHH
T ss_pred CCCcceEEEEECCHHHHHHHH
Confidence 998 99998875 877763
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.7e-09 Score=104.80 Aligned_cols=108 Identities=23% Similarity=0.297 Sum_probs=73.9
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCcc--chhcc--
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYT--KSFGS-- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlS--Ka~G~-- 371 (430)
++++|+ +.+++|.+.|+++|.++|++||++||+||+|+.|.. ..+ ..++. ..|+++.||+ |.+|.
T Consensus 124 ~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~-~~~----~~~~~---~~d~~~~S~~~~K~l~~~g 192 (373)
T 3frk_A 124 KTKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSL-YKG----MKVGS---LGDAAGFSFYPAKNLGSLG 192 (373)
T ss_dssp TEEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCE-ETT----EETTS---SSSEEEEECCTTSSSCCSS
T ss_pred CCeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCE-ECC----Eeccc---cccEEEEeCcCCCccCccc
Confidence 355565 567899999999999999999999999999987653 112 22332 2488989988 99976
Q ss_pred ccceeecC-HHHHHHHHhc---CCc-------ccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAGS-KSTIDYIRAN---SHV-------RSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~gs-~~li~~l~~~---~~~-------~~~s~s~~P~~~aaalaaL~~l 414 (430)
.||+++++ +++++.++.. ... ..+...++++.++..+..++.+
T Consensus 193 ~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~~~~~ 246 (373)
T 3frk_A 193 DGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDELQAGFLRVKLKYL 246 (373)
T ss_dssp SCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHHHHHHHHHHHHTH
T ss_pred eeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHHHHHHHHHHHHHH
Confidence 46888775 5676665532 111 1134456777777766655544
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=4.4e-09 Score=105.66 Aligned_cols=119 Identities=16% Similarity=0.193 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++++ ++++|+.+ +++|.+.|+++|.++|++||++||+||+|+.|... ++. .++
T Consensus 141 ~~~l~~~i~~-------------~~~~v~~~---n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~-~~~----~~~ 199 (399)
T 2oga_A 141 PLLVEKAITP-------------RTRALLPV---HLYGHPADMDALRELADRHGLHIVEDAAQAHGARY-RGR----RIG 199 (399)
T ss_dssp HHHHHHHCCT-------------TEEEECCB---CGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEE-TTE----ETT
T ss_pred HHHHHHhcCC-------------CCeEEEEe---CCcCCccCHHHHHHHHHHcCCEEEEECcccccCcc-CCe----ecc
Confidence 5667766542 34566643 56899999999999999999999999999877432 222 222
Q ss_pred CCCCCccEEEeCc--cchhcc--ccceeecC-HHHHHHHHhcCC-cc---------cccCCCcHHHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTY--TKSFGS--MGGYVAGS-KSTIDYIRANSH-VR---------SYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 353 ~~~~~~dIv~~Tl--SKa~G~--~GG~v~gs-~~li~~l~~~~~-~~---------~~s~s~~P~~~aaalaaL~~l~ 415 (430)
. -.||++.|| ||.+|. .||+++++ +++++.++.... +. .+...++++.++++.++++.+.
T Consensus 200 ~---~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~~ 274 (399)
T 2oga_A 200 A---GSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLD 274 (399)
T ss_dssp C---TTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHBTTCSSTTCCCSCCCBCCCCHHHHHHHHHHHHTHH
T ss_pred c---ccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHhcCccccccccccccCCCcCHHHHHHHHHHHHHHH
Confidence 1 137999999 799987 46888875 888877764211 10 1223567888888888887664
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=98.82 E-value=5.2e-09 Score=108.41 Aligned_cols=93 Identities=20% Similarity=0.203 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcc-cCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSI-VRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i-~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
+++|++++.+ ++++|+++.+ +++|.+ .++++|+++|++||++||+||+|+.+++|.. -...+
T Consensus 193 ~~~L~~~i~~-------------~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~---~~~~~ 255 (474)
T 1wyu_B 193 LEALKRELGP-------------HVAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWA---RPGDM 255 (474)
T ss_dssp HHHHHHHCST-------------TEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTC---CHHHH
T ss_pred HHHHHHhhCC-------------CceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCC---CcccC
Confidence 6777776643 3567777776 579998 6999999999999999999999987765421 11122
Q ss_pred CCCCCCccEEEeCccchhccc-------cceeecCHHHHHHHH
Q psy2206 352 GIDPREVDILMGTYTKSFGSM-------GGYVAGSKSTIDYIR 387 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~~-------GG~v~gs~~li~~l~ 387 (430)
.+||++.|++|+|+++ .|++++++++++.+.
T Consensus 256 -----g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~ 293 (474)
T 1wyu_B 256 -----GFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLP 293 (474)
T ss_dssp -----TCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCC
T ss_pred -----CCcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCC
Confidence 3589999999999865 389999998887664
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2e-09 Score=105.51 Aligned_cols=106 Identities=13% Similarity=0.127 Sum_probs=74.0
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-c
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-G 374 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G 374 (430)
++++|++..+.+++|.+.| +|+++||++||+||+|+.+... .++ .+.||++.|+||++|+.| |
T Consensus 141 ~~k~v~~~~~~nptG~~~~-----~i~~~~~~~li~D~a~~~~~~~---------~~~--~~~di~~~s~sK~~~~~G~G 204 (360)
T 1w23_A 141 NDAYLHITSNNTIYGTQYQ-----NFPEINHAPLIADMSSDILSRP---------LKV--NQFGMIYAGAQKNLGPSGVT 204 (360)
T ss_dssp TEEEEEEESEETTTTEECS-----SCCCCCSSCEEEECTTTTTSSC---------CCG--GGCSEEEEETTTTTSCTTCE
T ss_pred CCCEEEEeCCCCCcceecc-----cccccCCceEEEechhhcCCCC---------cCc--ccCCEEEEEcccccCCCCcE
Confidence 4678888899999999876 3445899999999999865321 112 123799999999999888 9
Q ss_pred eeecCHHHHHHHHhcCCcc----------cccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 375 YVAGSKSTIDYIRANSHVR----------SYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 375 ~v~gs~~li~~l~~~~~~~----------~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
|+++++++++.++.....+ ....++++..++++.++++.+.++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~ 257 (360)
T 1w23_A 205 VVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDL 257 (360)
T ss_dssp EEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999998887654422110 011345566666677778776543
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1e-08 Score=104.49 Aligned_cols=104 Identities=12% Similarity=0.077 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccC-CCCcccC---HHHHHHHHHhcCcEEEEecccccc---c-----c
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFS-MDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIG---A-----L 340 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~s-m~G~i~~---L~~I~~La~~y~~~LivDEAh~~G---~-----l 340 (430)
+++||+++.+.. +...++|+++++.+ ++|.+.+ +++|+++|++||++||+||+|+.| + +
T Consensus 160 ~~~l~~~i~~~t---------~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~ 230 (456)
T 2ez2_A 160 LKKLQKLIDEKG---------AENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQ 230 (456)
T ss_dssp HHHHHHHHHHHC---------GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHST
T ss_pred HHHHHHHHHhcc---------ccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEcccccccccccccccc
Confidence 678888886521 01346888887776 8998887 999999999999999999999875 1 2
Q ss_pred CCCCCccce---ecCCCCCCccEEEeCccchhccc-cceeec-CHHHHHHHHh
Q psy2206 341 GPTGRGVTE---YFGIDPREVDILMGTYTKSFGSM-GGYVAG-SKSTIDYIRA 388 (430)
Q Consensus 341 G~~GrG~~e---~~g~~~~~~dIv~~TlSKa~G~~-GG~v~g-s~~li~~l~~ 388 (430)
...|..+.. ..+.. .|+++.|++|.++.. ||++++ ++++++.++.
T Consensus 231 ~~~g~~~~~~~~~~~~~---~d~~~~S~kk~~~~~~gG~~~~~~~~~~~~~~~ 280 (456)
T 2ez2_A 231 GFENKSIAEIVHEMFSY---ADGCTMSGKKDCLVNIGGFLCMNDDEMFSSAKE 280 (456)
T ss_dssp TCTTSCHHHHHHHHHTT---CSEEEEETTTTTCCSSCEEEEESCHHHHHHHHH
T ss_pred ccCCcchhhhhhhhccc---CCEEEEeCcccCCCCceeEEEECCHHHHHHHHH
Confidence 223332211 11221 366666788876544 799988 7888887654
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=4e-09 Score=104.69 Aligned_cols=109 Identities=19% Similarity=0.226 Sum_probs=78.1
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCc--cchhccc-
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTY--TKSFGSM- 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~Tl--SKa~G~~- 372 (430)
++++|+.+ +++|...|+++|.++|++||++||+||+|+.|... .|. ..+.- . ||++.|| +|.+|..
T Consensus 123 ~~~~v~~~---~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~~-~~~----~~~~~--~-di~~~Sf~~~K~l~~~g 191 (367)
T 3nyt_A 123 RTKAIIPV---SLYGQCADFDAINAIASKYGIPVIEDAAQSFGASY-KGK----RSCNL--S-TVACTSFFPSAPLGCYG 191 (367)
T ss_dssp TEEEECCB---CGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCEE-TTE----ETTSS--S-SEEEEECCTTSSSCCSS
T ss_pred CCcEEEee---CCccChhhHHHHHHHHHHcCCEEEEECccccCCeE-CCe----eccCC--C-CEEEEECCCCCcCCCcC
Confidence 45666644 46799999999999999999999999999977541 122 22221 1 7999997 8999864
Q ss_pred -cceeec-CHHHHHHHHhcCCc----------ccccCCCcHHHHHHHHHHHHHHH
Q psy2206 373 -GGYVAG-SKSTIDYIRANSHV----------RSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 373 -GG~v~g-s~~li~~l~~~~~~----------~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
||++++ ++++++.++..... ..++..+++..++++++.++.+.
T Consensus 192 ~gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~ 246 (367)
T 3nyt_A 192 DGGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAILLPKLEIFE 246 (367)
T ss_dssp CCEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHHHHHHHHTHH
T ss_pred ceeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHHHHHHHHHHH
Confidence 588877 58888877653211 01356688998888888877653
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.77 E-value=6.7e-09 Score=114.34 Aligned_cols=138 Identities=17% Similarity=0.127 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHhhcCCCCCC---CCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccc-cCCCCCcc
Q psy2206 272 APSSLEAGLQKALLEGQPHSG---KPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGA-LGPTGRGV 347 (430)
Q Consensus 272 ~~~~Le~~L~~~~~~~~p~~~---~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~-lG~~GrG~ 347 (430)
.+++|+++|++. |++. ..+.+.++++.+ +++|.+.|+++|+++|++|+++|++||||+.++ +++.+++.
T Consensus 291 d~e~le~~i~~~-----~~~k~~~~~~~klvil~~p--n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~~ 363 (755)
T 2vyc_A 291 QPETLQKKISES-----PLTKDKAGQKPSYCVVTNC--TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADH 363 (755)
T ss_dssp SHHHHHHHHHHC-----TTTGGGTTCCCSCEEEESS--CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGGCGGGTTS
T ss_pred CHHHHHHHHHhC-----ccccccccCCCeEEEEECC--CCCceecCHHHHHHHHHHcCCEEEEECcCchhcccCcccCCc
Confidence 378888888762 1110 111234566654 568999999999999999999999999998653 34322111
Q ss_pred ceecC--CC-CCCccEEEeCccchhccc--cceeecCHH--HH--HHHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 348 TEYFG--ID-PREVDILMGTYTKSFGSM--GGYVAGSKS--TI--DYIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 348 ~e~~g--~~-~~~~dIv~~TlSKa~G~~--GG~v~gs~~--li--~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
....+ .+ ....+|++.|+||+++.+ ||+++.+.+ .+ ..+.... ....+++++.+.+++..+|++.+..+
T Consensus 364 ~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~-~~~~s~sp~~~~iaal~aA~~~l~~~ 441 (755)
T 2vyc_A 364 YAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAY-MMHATTSPLYAICASNDVAVSMMDGN 441 (755)
T ss_dssp SSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHH-HHTSCSSCCHHHHHHHHHHHHHHSTH
T ss_pred chhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence 11122 11 123446999999999753 577766443 22 2222211 12235667777777777888877543
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=4.9e-09 Score=104.38 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|+++|++ ++++|+ +.+++|.+.|+++|.++|++||++||+||+|+.|... .|..+ ..++
T Consensus 116 ~~~l~~~i~~-------------~~~~v~---~~n~tG~~~~l~~i~~la~~~~~~li~D~a~~~g~~~-~~~~~-~~~~ 177 (388)
T 1b9h_A 116 PEAVAAAVTP-------------RTKVIM---PVHMAGLMADMDALAKISADTGVPLLQDAAHAHGARW-QGKRV-GELD 177 (388)
T ss_dssp HHHHHHHCCT-------------TEEEEC---CBCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEE-TTEEG-GGSS
T ss_pred HHHHHHhcCc-------------CceEEE---EeCCccCcCCHHHHHHHHHHcCCEEEEecchhcCCcc-CCeec-cccc
Confidence 6777776632 355555 6788999999999999999999999999999876532 22211 1111
Q ss_pred CCCCCccEEEeCcc--chh-ccccceeecCHH-H--HHHHHhcCC--------cc-----cccCCCcHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYT--KSF-GSMGGYVAGSKS-T--IDYIRANSH--------VR-----SYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 353 ~~~~~~dIv~~TlS--Ka~-G~~GG~v~gs~~-l--i~~l~~~~~--------~~-----~~s~s~~P~~~aaalaaL~~ 413 (430)
||.+.||| |.+ |..||+++++++ + ++.++.... .+ .++..++++++++++.+++.
T Consensus 178 ------~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~~~~ 251 (388)
T 1b9h_A 178 ------SIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLAR 251 (388)
T ss_dssp ------SCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTT
T ss_pred ------ceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecccccCCcCHHHHHHHHHHHHH
Confidence 67788998 555 345689988775 6 666643211 01 11223677777766666665
Q ss_pred HH
Q psy2206 414 IM 415 (430)
Q Consensus 414 l~ 415 (430)
+.
T Consensus 252 l~ 253 (388)
T 1b9h_A 252 LD 253 (388)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3e-09 Score=104.93 Aligned_cols=105 Identities=12% Similarity=0.106 Sum_probs=75.5
Q ss_pred ceEEEEEcCccCCCCcc-cCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-
Q psy2206 296 RKILIVVEGIFSMDGSI-VRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG- 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i-~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G- 373 (430)
++++|++-.+.+++|.+ .|+++| ||+++++||+|+.|.. ...+ .+.|+++.|+||++|++|
T Consensus 142 ~t~~v~~~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~---------~~~~--~~~d~~~~s~~K~~g~~G~ 204 (362)
T 2c0r_A 142 NAAYLHLTSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSR---------PFDL--NQFGLVYAGAQKNLGPSGV 204 (362)
T ss_dssp TEEEEEEESEETTTTEECSSCCCC------TTSCEEEECTTTTTSS---------CCCG--GGCSEEEEETTTTTCCSSC
T ss_pred CcCEEEEeCCcCccceeccccccc------CCCEEEEEChhhccCC---------ccch--hHCcEEEEeccccccCcCc
Confidence 46778888888999995 778876 8999999999986532 1122 234899999999999888
Q ss_pred ceeecCHHHHHHHHhcCCcc----------cccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 374 GYVAGSKSTIDYIRANSHVR----------SYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 374 G~v~gs~~li~~l~~~~~~~----------~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
||+++++++++.++.....+ ....+++++.++++.++|+.+.++
T Consensus 205 G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~ 258 (362)
T 2c0r_A 205 TVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEER 258 (362)
T ss_dssp EEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHh
Confidence 99999998887654321100 112345666777788888877553
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=98.74 E-value=2.1e-08 Score=102.31 Aligned_cols=102 Identities=10% Similarity=0.066 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcC-ccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCC---
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEG-IFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR--- 345 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~-v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr--- 345 (430)
+++|++.+++. + ++++|++.+ ..|++|.+.+ +++|+++|++|++++|+||+|..-.++....
T Consensus 161 ~~~l~~~l~~~----------~-~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~ 229 (405)
T 3k7y_A 161 YDLFLNDLRNI----------P-NGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVL 229 (405)
T ss_dssp HHHHHHHHHHS----------C-SSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGH
T ss_pred HHHHHHHHHhC----------C-CCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchH
Confidence 56777777652 1 233555555 5799999887 7788899999999999999997544432100
Q ss_pred ccceecCCCCCCccEEEeCccchhcccc---ceee---cCHHHHHHHH
Q psy2206 346 GVTEYFGIDPREVDILMGTYTKSFGSMG---GYVA---GSKSTIDYIR 387 (430)
Q Consensus 346 G~~e~~g~~~~~~dIv~~TlSKa~G~~G---G~v~---gs~~li~~l~ 387 (430)
.+...... .+..|+++||||+||++| ||++ +++++++.+.
T Consensus 230 ~~~~~~~~--~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~ 275 (405)
T 3k7y_A 230 LIRKFEEK--NIAFSVCQSFSKNMSLYGERAGALHIVCKNQEEKKIVF 275 (405)
T ss_dssp HHHHHHTT--TCCEEEEEECTTTSCCTTTTEEEEEEECSSHHHHHHHH
T ss_pred HHHHHHhc--CCcEEEEeeCCccCCCccccceEEEEEeCCHHHHHHHH
Confidence 11111121 234699999999999999 9974 4777765543
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-08 Score=100.16 Aligned_cols=105 Identities=14% Similarity=0.109 Sum_probs=68.1
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCcc--chhcc-cc
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYT--KSFGS-MG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlS--Ka~G~-~G 373 (430)
+++|++..+ +|.+.|+++|.++|++||++||+||+|+.|... .+ ...+.. .||++.||| |.+|. .|
T Consensus 122 ~~~v~~~~~---tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~-~~----~~~~~~---~~i~~~s~s~~K~~~~g~g 190 (375)
T 2fnu_A 122 TKAIVSVDY---AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEY-QN----KKVGGF---ALASVFSFHAIKPITTAEG 190 (375)
T ss_dssp EEEEEEECG---GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEE-TT----EETTSS---SSEEEEECCTTSSSCCSSC
T ss_pred ceEEEEeCC---cCCccCHHHHHHHHHHcCCEEEEECccccCCeE-CC----eecccc---CCeEEEeCCCCCCccccCc
Confidence 445555444 799999999999999999999999999876542 11 122211 268888999 99976 33
Q ss_pred ceeecC-HHHHHHHHhcCC-c-------------ccccCCCcHHHHHHHHHHHH
Q psy2206 374 GYVAGS-KSTIDYIRANSH-V-------------RSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 374 G~v~gs-~~li~~l~~~~~-~-------------~~~s~s~~P~~~aaalaaL~ 412 (430)
++++.+ +++++.++.... . ..+...+++..+++++..++
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 244 (375)
T 2fnu_A 191 GAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLK 244 (375)
T ss_dssp EEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHT
T ss_pred eEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHHHHHHH
Confidence 444433 778877765321 1 11123567776666655443
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.73 E-value=5.2e-09 Score=108.33 Aligned_cols=89 Identities=16% Similarity=0.090 Sum_probs=65.5
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEecccccccc---CCCCCccceecCCCCCCccEEEeCccchh-cc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGAL---GPTGRGVTEYFGIDPREVDILMGTYTKSF-GS 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~l---G~~GrG~~e~~g~~~~~~dIv~~TlSKa~-G~ 371 (430)
++++|+++.+.+++|.+.|+++|.++|++||++|++||||+.+++ ...|.|....+......+|+++.|++|.+ +.
T Consensus 206 ~~~~v~~~~p~nptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~ 285 (497)
T 3mc6_A 206 NTVLLVGSAPNFPHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAP 285 (497)
T ss_dssp SEEEEEEETTCTTTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCC
T ss_pred CCEEEEEECCCCCCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCC
Confidence 467899999999999999999999999999999999999985432 11233322112222245799999999986 44
Q ss_pred cc-ceeecCHHHHH
Q psy2206 372 MG-GYVAGSKSTID 384 (430)
Q Consensus 372 ~G-G~v~gs~~li~ 384 (430)
.| |+++.+.+.+.
T Consensus 286 ~~~g~~~~~~~~~~ 299 (497)
T 3mc6_A 286 KGSSVIMYRNSDLR 299 (497)
T ss_dssp SSCEEEECSSHHHH
T ss_pred CCceeEEecCHHHH
Confidence 44 77777665554
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.3e-08 Score=101.21 Aligned_cols=107 Identities=22% Similarity=0.225 Sum_probs=71.7
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCcc--chhcc-cc
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYT--KSFGS-MG 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlS--Ka~G~-~G 373 (430)
+++|++.. ++|.+.++++|+++|++||++||+||+|+.|+. ..|. ..+. -.||++.||| |.++. .|
T Consensus 139 ~~~v~~~~---~tG~~~~l~~i~~la~~~~~~li~Dea~~~g~~-~~~~----~~~~---~~di~~~S~sk~K~l~~~~~ 207 (424)
T 2po3_A 139 TSAVVGVH---LWGRPCAADQLRKVADEHGLRLYFDAAHALGCA-VDGR----PAGS---LGDAEVFSFHATKAVNAFEG 207 (424)
T ss_dssp EEEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCE-ETTE----ETTS---SSSEEEEECCTTSSSCCSSC
T ss_pred CcEEEEEC---CCCCcCCHHHHHHHHHHcCCEEEEECccccCCe-ECCe----eccc---ccCEEEEeCCCCCCccCCCC
Confidence 44555433 579999999999999999999999999987653 2232 1221 1269999999 76653 45
Q ss_pred ceeecC-HHHHHHHHhcCCc-c--c-------ccCCCcHHHHHHHHHHHHHH
Q psy2206 374 GYVAGS-KSTIDYIRANSHV-R--S-------YATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 374 G~v~gs-~~li~~l~~~~~~-~--~-------~s~s~~P~~~aaalaaL~~l 414 (430)
||++++ +++++.++..... . . +...+++..+++++..++.+
T Consensus 208 G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~~~~~ 259 (424)
T 2po3_A 208 GAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLTSLDAF 259 (424)
T ss_dssp EEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHHHHHHH
T ss_pred eEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHHHHHHH
Confidence 899998 8998877642111 0 0 12245677777666655544
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.1e-08 Score=100.86 Aligned_cols=105 Identities=14% Similarity=0.139 Sum_probs=70.7
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCcc--chhccc--
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYT--KSFGSM-- 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlS--Ka~G~~-- 372 (430)
+++|+ +.+++|.+.|+++|.++|++||++||+||+|+.|..- .+ +..+. ..|+++.|+| |.+|..
T Consensus 126 ~~~v~---~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~~-~~----~~~~~---~~d~~~~s~~~~K~l~~~g~ 194 (374)
T 3uwc_A 126 TKAIM---PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGRI-ND----KFVGS---WGQFACFSLHPLKNLNVWSD 194 (374)
T ss_dssp EEEEC---CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEE-TT----EETTS---SSSEEEEECSSSSSSCCSSC
T ss_pred ceEEE---EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCcee-CC----eeccc---cccEEEEeCCCCCcCCccce
Confidence 45555 6778999999999999999999999999999876421 11 22332 2389999977 999763
Q ss_pred cceeec-CHHHHHHHHhcCC----------cccccCCCcHHHHHHHHHHHH
Q psy2206 373 GGYVAG-SKSTIDYIRANSH----------VRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 373 GG~v~g-s~~li~~l~~~~~----------~~~~s~s~~P~~~aaalaaL~ 412 (430)
||++++ ++++++.++.... ...+...+++..++..+..++
T Consensus 195 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~ 245 (374)
T 3uwc_A 195 AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTIQAVIANRLMN 245 (374)
T ss_dssp CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHHHHHHHHHHGG
T ss_pred eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHHHHHHHHHHHH
Confidence 688776 4567776664321 011233456666666554443
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.1e-08 Score=105.44 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=72.5
Q ss_pred EEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccc-cCCCCCccceecCCCCCCccEEEeCccchhc-cc-cce
Q psy2206 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGA-LGPTGRGVTEYFGIDPREVDILMGTYTKSFG-SM-GGY 375 (430)
Q Consensus 299 lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~-lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G-~~-GG~ 375 (430)
+|++.. .+++|.+.|+++|+++|++||++|++||||+..+ +++ . ...... ...|+++.|+||+++ .. +|+
T Consensus 149 ~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~--~-~~~~~~---~g~Di~~~S~~K~l~~~~g~g~ 221 (446)
T 2x3l_A 149 LVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQG--F-PDSTLN---YQADYVVQSFHKTLPALTMGSV 221 (446)
T ss_dssp EEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTT--S-CCCGGG---GTCSEEEECHHHHSSSCTTCEE
T ss_pred EEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCC--C-CCChHH---cCCCEEEECCccccccccccEE
Confidence 444444 4559999999999999999999999999998622 222 1 111111 134899999999664 33 488
Q ss_pred eecCHHHHH--HHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 376 VAGSKSTID--YIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 376 v~gs~~li~--~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
+++++++++ .+.... ....++++++..+++..++++.+...
T Consensus 222 l~~~~~~i~~~~~~~~~-~~~~~~s~~~~~~aal~~a~~~l~~~ 264 (446)
T 2x3l_A 222 LYIHKNAPYRENIIEYL-SYFQTSSPSYLIMASLESAAQFYKTY 264 (446)
T ss_dssp EEEETTCTTHHHHHHHH-HHHSCSSCCHHHHHHHHHHHHHHHHC
T ss_pred EEEcCCcCCHHHHHHHH-HHHcCCCchHHHHHHHHHHHHHHHHh
Confidence 888777654 222211 11224556666666666778877654
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=9.4e-09 Score=103.09 Aligned_cols=107 Identities=18% Similarity=0.141 Sum_probs=75.3
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc--
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-- 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-- 373 (430)
++++|++..+.+++|.+.|+++|.++ ||++|++||+|+.+... .++ .++|+++.|+||.+|++|
T Consensus 165 ~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~---------~~~--~~~di~~~s~sK~~~~~gg~ 230 (398)
T 2fyf_A 165 SVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLP---------VDI--AETDAYYFAPQKNFASDGGL 230 (398)
T ss_dssp TCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSC---------CCG--GGCSEEEECTTSTTCSCSSE
T ss_pred CCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcc---------cCc--ccCcEEEEecCcccCCCCce
Confidence 34567777899999999999998887 89999999999865321 122 236899999999999885
Q ss_pred ceeecCHHHHHHHHhcC--------------------CcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 374 GYVAGSKSTIDYIRANS--------------------HVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 374 G~v~gs~~li~~l~~~~--------------------~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
||+++++++++.++... ....+ .+.+...++++.++|+.+.++
T Consensus 231 g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~t~~~~~~~a~~~al~~~~~~ 293 (398)
T 2fyf_A 231 WLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTY-NTPAIATLALLAEQIDWLVGN 293 (398)
T ss_dssp EEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCS-SCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCC-CCCCHHHHHHHHHHHHHHHHc
Confidence 67889999988774310 01122 234555566667788776544
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=2e-08 Score=99.80 Aligned_cols=91 Identities=24% Similarity=0.349 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++++ ++++|++.. ++|.+.|+++|.++|++||++||+||+|+.|+.. .++ .++
T Consensus 117 ~~~l~~~l~~-------------~~~~v~~~~---~~G~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~-~~~----~~~ 175 (393)
T 1mdo_A 117 PEHIEAAITP-------------QTKAIIPVH---YAGAPADLDAIYALGERYGIPVIEDAAHATGTSY-KGR----HIG 175 (393)
T ss_dssp HHHHHHHCCT-------------TEEEECCBC---GGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEE-TTE----ETT
T ss_pred HHHHHHhcCC-------------CceEEEEeC---CCCCcCCHHHHHHHHHHcCCeEEEECccccCCeE-CCe----ecC
Confidence 5677766542 345666554 5799999999999999999999999999876532 222 222
Q ss_pred CCCCCccEEEeCcc--chhc-cccceeecC-HHHHHHHHh
Q psy2206 353 IDPREVDILMGTYT--KSFG-SMGGYVAGS-KSTIDYIRA 388 (430)
Q Consensus 353 ~~~~~~dIv~~TlS--Ka~G-~~GG~v~gs-~~li~~l~~ 388 (430)
. .|+++.||| |.++ ..||+++++ +++++.++.
T Consensus 176 ~----~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~ 211 (393)
T 1mdo_A 176 A----RGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRS 211 (393)
T ss_dssp S----SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHH
T ss_pred C----CCeEEEeCCCCCccccccceEEEeCCHHHHHHHHH
Confidence 1 589999999 8875 356888886 889888765
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=4.5e-08 Score=98.21 Aligned_cols=123 Identities=17% Similarity=0.273 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++++. +.++++|++++ ++|...++++|.++|++||++||+||+|+.|+.. .|..... +
T Consensus 109 ~~~l~~~i~~~----------~~~~~~v~~~~---~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~-~~~~~~~-~- 172 (394)
T 1o69_A 109 VDLLKLAIKEC----------EKKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFY-KNKALGT-F- 172 (394)
T ss_dssp HHHHHHHHHHC----------SSCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEE-TTEETTS-S-
T ss_pred HHHHHHHHhcc----------cCCceEEEEEC---CCCChhhHHHHHHHHHHcCCEEEEECcCccccee-CCccccc-c-
Confidence 67888887652 01234555555 5799999999999999999999999999876531 2221111 1
Q ss_pred CCCCCccEEEeCccchhcc-ccceeecC-HHHHHHHHhcCCccc-----cc-------CCCcHHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGS-MGGYVAGS-KSTIDYIRANSHVRS-----YA-------TSMPPPVAMQILTSMRII 414 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~-~GG~v~gs-~~li~~l~~~~~~~~-----~s-------~s~~P~~~aaalaaL~~l 414 (430)
..+|+...|.+|.++. -+||++++ +++++.++....... +. ..++++.++.++..++.+
T Consensus 173 ---~~~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l 245 (394)
T 1o69_A 173 ---GEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVL 245 (394)
T ss_dssp ---SSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTH
T ss_pred ---cCcEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHHHHH
Confidence 2356665555788863 35899994 899988875321110 11 115677777766666554
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=98.65 E-value=2.9e-08 Score=102.27 Aligned_cols=103 Identities=16% Similarity=0.142 Sum_probs=73.5
Q ss_pred HHHHHHHH-HHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGL-QKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L-~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
+++|+++| ++.. ..++++|++....+++|.+.|+++|.++|++||+++++||||+..++|..-.. ...+
T Consensus 216 ~~~l~~~i~~~~~---------~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~-~~~~ 285 (456)
T 2z67_A 216 VEDIENAIKKEIE---------LGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKL-KKAF 285 (456)
T ss_dssp HHHHHHHHHHHHH---------TTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHhh---------CCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHH-HHhh
Confidence 78999998 4310 01466777888888999999999999999999999999999976544210000 0011
Q ss_pred CCCCCCccEEEeCccchhcc-c-cceeec-CHHHHHHHHh
Q psy2206 352 GIDPREVDILMGTYTKSFGS-M-GGYVAG-SKSTIDYIRA 388 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~-~-GG~v~g-s~~li~~l~~ 388 (430)
. ..+|+++.|++|.++. . +|+++. ++++++.+..
T Consensus 286 --~-~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~ 322 (456)
T 2z67_A 286 --K-YRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISL 322 (456)
T ss_dssp --T-SCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHT
T ss_pred --C-CCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCc
Confidence 1 1468999999997643 3 388888 6888887754
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.1e-07 Score=96.81 Aligned_cols=111 Identities=19% Similarity=0.206 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccC-CCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALG-PTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG-~~GrG~~e~~ 351 (430)
+++|+++|++....| .++++|++..+.+++|.+.||++|.++|++||++|++|+||+.+.+. +..+. ...
T Consensus 229 ~~~L~~~i~~~~~~g-------~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~--~~~ 299 (504)
T 2okj_A 229 PADFEAKILEAKQKG-------YVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRH--KLN 299 (504)
T ss_dssp HHHHHHHHHHHHHTT-------CEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGG--GGT
T ss_pred HHHHHHHHHHHHHCC-------CCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHh--hcC
Confidence 789999987642111 14678888888899999999999999999999999999999877652 11111 112
Q ss_pred CCCCCCccEEEeCccchhccc--cceeecCH-HHHHHHHhcCCccc
Q psy2206 352 GIDPREVDILMGTYTKSFGSM--GGYVAGSK-STIDYIRANSHVRS 394 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~~--GG~v~gs~-~li~~l~~~~~~~~ 394 (430)
++ ..+|+++.+++|.++.+ .|+++.++ ++++.......+++
T Consensus 300 g~--~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l 343 (504)
T 2okj_A 300 GI--ERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYL 343 (504)
T ss_dssp TG--GGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSS
T ss_pred Cc--ccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccc
Confidence 22 25689999999999743 27777654 56654433333443
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.4e-08 Score=98.18 Aligned_cols=80 Identities=20% Similarity=0.236 Sum_probs=60.2
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccc-cCCCCCccceecCCCCCCccEEEeCc--cchhcc-c
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGA-LGPTGRGVTEYFGIDPREVDILMGTY--TKSFGS-M 372 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~-lG~~GrG~~e~~g~~~~~~dIv~~Tl--SKa~G~-~ 372 (430)
+++|++. +++|.+.++++|.++|++||++||+||+|+.+. +. +. ..+.. .|+++.|| ||.+|. .
T Consensus 131 ~~~v~~~---~~~G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~--~~----~~~~~---~~~~~~s~s~~K~~~~g~ 198 (418)
T 2c81_A 131 TKAIIPV---HLFGSMANMDEINEIAQEHNLFVIEDCAQSHGSVWN--NQ----RAGTI---GDIGAFSCQQGKVLTAGE 198 (418)
T ss_dssp EEEECCB---CCTTCCCCHHHHHHHHHHTTCEEEEECTTCTTCEET--TE----ETTSS---SSEEEEECCTTSSSCSSS
T ss_pred CeEEEEe---CCcCCcccHHHHHHHHHHCCCEEEEECcccccCccC--CE----ecccc---cceEEEeccCCcccCCCC
Confidence 5566654 368999999999999999999999999999875 32 21 12211 25778888 999976 5
Q ss_pred cceeec-CHHHHHHHHh
Q psy2206 373 GGYVAG-SKSTIDYIRA 388 (430)
Q Consensus 373 GG~v~g-s~~li~~l~~ 388 (430)
||++++ ++++++.++.
T Consensus 199 ~g~~~~~~~~l~~~~~~ 215 (418)
T 2c81_A 199 GGIIVTKNPRLFELIQQ 215 (418)
T ss_dssp CEEEEESCHHHHHHHHH
T ss_pred eEEEEECCHHHHHHHHH
Confidence 689888 5788877664
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.2e-07 Score=95.87 Aligned_cols=102 Identities=20% Similarity=0.134 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCC-CCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPT-GRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~-GrG~~e~~ 351 (430)
+++|+++|++....+ .++++|++..+.+++|.+.||++|.++|++||++|++|+||+.+.+... .+. ...
T Consensus 243 ~~~L~~~i~~~~~~g-------~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~--~~~ 313 (515)
T 2jis_A 243 PEDLERQIGMAEAEG-------AVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRH--LLD 313 (515)
T ss_dssp HHHHHHHHHHHHHTT-------CEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGG--GGT
T ss_pred HHHHHHHHHHHHhCC-------CCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhChhhHh--hcC
Confidence 689999987642211 1467888899999999999999999999999999999999987765311 111 112
Q ss_pred CCCCCCccEEEeCccchhccc-c-ceeecCHH--HHHH
Q psy2206 352 GIDPREVDILMGTYTKSFGSM-G-GYVAGSKS--TIDY 385 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~~-G-G~v~gs~~--li~~ 385 (430)
++ ..+|+++.+++|.++.+ | |+++.+++ +++.
T Consensus 314 g~--~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~ 349 (515)
T 2jis_A 314 GI--QRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKR 349 (515)
T ss_dssp TG--GGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHH
T ss_pred CC--ccCCEEEECcccccCCCCCeeEEEEeChHHHHHH
Confidence 22 25699999999998743 3 77776654 6554
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=4.3e-08 Score=95.55 Aligned_cols=90 Identities=17% Similarity=-0.004 Sum_probs=62.1
Q ss_pred ceEEEEEcCccCCCCc---ccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGS---IVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~---i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
++++|+++++. ++|. ..+|++|+++|++||++||+||+|+.+.+...|... ..+++. ...|+++.|+||+.+..
T Consensus 141 ~~~~v~~~~~~-~tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~-~~~~~~-~~~d~~~~s~sK~g~~~ 217 (356)
T 1v72_A 141 QPACVSITQAT-EVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSP-AEMTWK-AGVDALSFGATKNGVLA 217 (356)
T ss_dssp EEEEEEEESSC-TTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCT-TTTTGG-GTCCEEEECCGGGTCSS
T ss_pred CceEEEEEcCC-CCCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCH-HHhhhh-hcCCEEEEecccCCCcC
Confidence 46788888876 5999 455999999999999999999999754321111111 111111 14578888999993334
Q ss_pred c-ceeecCHHHHHHHHh
Q psy2206 373 G-GYVAGSKSTIDYIRA 388 (430)
Q Consensus 373 G-G~v~gs~~li~~l~~ 388 (430)
| |++++++++++.++.
T Consensus 218 G~g~~~~~~~~~~~~~~ 234 (356)
T 1v72_A 218 AEAIVLFNTSLATEMSY 234 (356)
T ss_dssp CEEEEESSGGGHHHHHH
T ss_pred ccEEEEECHHHHhhHHH
Confidence 5 588889999887654
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.4e-07 Score=97.96 Aligned_cols=103 Identities=19% Similarity=0.185 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|+++|++....+ .+..+|++....+++|.+.||++|.++|++||++|++||||+.+.+....+. ...+
T Consensus 242 ~~~L~~~i~~~~~~~-------~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~--~~~g 312 (497)
T 2qma_A 242 ITKLDEVIAQAKAEG-------LIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSSHKS--RLKG 312 (497)
T ss_dssp GGGHHHHHHHHHHTT-------CEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGG--GGTT
T ss_pred HHHHHHHHHHHHHCC-------CcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCcchH--hhcC
Confidence 688999987632111 1244677777778899999999999999999999999999987765322221 1223
Q ss_pred CCCCCccEEEeCccchhcccc--ceeec-CHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFGSMG--GYVAG-SKSTIDYI 386 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G--G~v~g-s~~li~~l 386 (430)
+ ..+|+++.|++|.++.+. |+++. ++..++.+
T Consensus 313 i--~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~~~~~ 347 (497)
T 2qma_A 313 V--ERAHSISVDFHKLFYQTISCGALLVNDKSNFKFL 347 (497)
T ss_dssp G--GGCSEEEEETTTTTCCCSSCEEEEESCGGGGGGG
T ss_pred c--ccCCEEEEcchhccCCCcceEEEEEeCHHHHHHh
Confidence 3 256899999999987643 55554 45544443
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-07 Score=95.53 Aligned_cols=103 Identities=16% Similarity=0.146 Sum_probs=67.8
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcC--cEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYK--AYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~--~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
++++|++.++.+++|.+.+ +|++ ++|+ ++||+||+|.. ++ ...+ .. ..+.+|+++||||+||++|
T Consensus 157 ~~k~v~l~~p~NPtG~~~~--~l~~--~~~~~~~~ii~De~y~~---~~-~~~l----~~-~~~~~i~~~S~SK~~g~~G 223 (391)
T 3bwn_A 157 GPYIELVTSPNNPDGTIRE--TVVN--RPDDDEAKVIHDFAYYW---PH-YTPI----TR-RQDHDIMLFTFSKITGHAG 223 (391)
T ss_dssp SCEEEEEESSCTTTCCCCC--CCC-------CCCEEEEECTTCS---TT-TSCC----CC-CBCCSEEEEEHHHHHSCGG
T ss_pred CCEEEEECCCCCCCchhHH--HHHH--HhhcCCCEEEEeCCCCC---CC-CCcc----cc-CCCCeEEEEechhhcCCCc
Confidence 3567778999999999986 4544 2266 99999999963 11 1111 11 1356899999999999999
Q ss_pred ---ceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 374 ---GYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 374 ---G~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
||+++ ++++++.+.... ..... +.+++...++.++|+.
T Consensus 224 lRiG~~~~~~~~l~~~l~~~~-~~~~~-~~~~~~q~a~~~~l~~ 265 (391)
T 3bwn_A 224 SRIGWALVKDKEVAKKMVEYI-IVNSI-GVSKESQVRTAKILNV 265 (391)
T ss_dssp GCEEEEEECCHHHHHHHHHHH-HHHHS-SCCHHHHHHHHHHHHH
T ss_pred cceEEEEecCHHHHHHHHHHh-ccccc-CCCHHHHHHHHHHHhC
Confidence 99986 899998887643 22223 3455555556666654
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.5e-07 Score=91.22 Aligned_cols=119 Identities=13% Similarity=0.085 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++++ ++++|++.. +.|...|+++|.++|++||++||+||+|+.|... .+ ..+|
T Consensus 118 ~~~l~~~i~~-------------~~~~v~~~~---~~g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~-~~----~~~g 176 (390)
T 3b8x_A 118 IESLKEAVTD-------------STKAILTVN---LLGNPNNFDEINKIIGGRDIILLEDNCESMGATF-NN----KCAG 176 (390)
T ss_dssp HHHHHHHCCT-------------TEEEEEEEC---GGGCCCCHHHHHHHHTTSCCEEEEECTTCTTCEE-TT----EETT
T ss_pred HHHHHHHhCc-------------CCeEEEEEC---CccChhhHHHHHHHHHHcCCEEEEECcCcccCEE-CC----cccc
Confidence 5677766542 234444432 4588899999999999999999999999977643 22 2344
Q ss_pred CCCCCccEEEeCc--cchhc-cccceeecCH-HHHHHHHhcC-Cc-----------------------c-----cccCCC
Q psy2206 353 IDPREVDILMGTY--TKSFG-SMGGYVAGSK-STIDYIRANS-HV-----------------------R-----SYATSM 399 (430)
Q Consensus 353 ~~~~~~dIv~~Tl--SKa~G-~~GG~v~gs~-~li~~l~~~~-~~-----------------------~-----~~s~s~ 399 (430)
.. .|+...|+ +|.++ ..||++++++ ++++.++... .+ + .+...+
T Consensus 177 ~~---~~~~~~s~~~~k~~~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 253 (390)
T 3b8x_A 177 TF---GLMGTFSSFYSNHIATMEGGCIVTDDEEIYHILLCIRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRP 253 (390)
T ss_dssp SS---SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCC
T ss_pred cc---cceEEEEccCCCCCccCCceEEEeCCHHHHHHHHHHHhcCCCccccccccccccccccccccccceeccccccCc
Confidence 32 24443222 34543 3578988875 6766554311 01 0 122337
Q ss_pred cHHHHHHHHHHHHHHH
Q psy2206 400 PPPVAMQILTSMRIIM 415 (430)
Q Consensus 400 ~P~~~aaalaaL~~l~ 415 (430)
+++.+++++++|+.+.
T Consensus 254 ~~~~aa~~l~~l~~l~ 269 (390)
T 3b8x_A 254 LEMSGAIGIEQLKKLP 269 (390)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8888888888777664
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.9e-07 Score=94.58 Aligned_cols=100 Identities=17% Similarity=0.111 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEecccccccc-CCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGAL-GPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~l-G~~GrG~~e~~ 351 (430)
+++||++|++....+ ..+++|++....+++|.+.||++|.++|++||++|+||+||+.+++ ++..++.. .
T Consensus 225 ~~~Le~~i~~~~~~g-------~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~--~ 295 (481)
T 4e1o_A 225 GEALQKAIEEDKQRG-------LVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFL--K 295 (481)
T ss_dssp HHHHHHHHHHHHHTT-------CEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGG--T
T ss_pred HHHHHHHHHHHHhCC-------CCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHh--c
Confidence 899999998643211 1356677777788999999999999999999999999999987753 33333322 2
Q ss_pred CCCCCCccEEEeCccchhcccc---ceeecCHHHH
Q psy2206 352 GIDPREVDILMGTYTKSFGSMG---GYVAGSKSTI 383 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li 383 (430)
|+ ..+|.++.+.+|.++.+. ++++.+++.+
T Consensus 296 gi--~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l 328 (481)
T 4e1o_A 296 GI--EYADSFTFNPSKWMMVHFDCTGFWVKDKYKL 328 (481)
T ss_dssp TG--GGCSEEEECHHHHSSCCSSCEEEEESBHHHH
T ss_pred Cc--ccCCEEEEChHHhcCCCCceEEEEEeCHHHH
Confidence 33 246899999999998643 4455556554
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=1.6e-07 Score=93.48 Aligned_cols=108 Identities=17% Similarity=0.165 Sum_probs=69.2
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCcc--chhc-cc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYT--KSFG-SM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlS--Ka~G-~~ 372 (430)
++++|++ -+++|.+.|+++|+++|++||++||+||+|+.|.... + ...+.. .||++.||| |+++ ..
T Consensus 144 ~~~~v~~---~n~tG~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~-~----~~~~~~---~di~~~S~s~~K~l~~g~ 212 (391)
T 3dr4_A 144 RTKAIMP---VHLYGQICDMDPILEVARRHNLLVIEDAAEAVGATYR-G----KKSGSL---GDCATFSFFGNAIITTGE 212 (391)
T ss_dssp TEEEECC---BCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEET-T----EETTSS---SSEEEEECBTTSSSCCBS
T ss_pred CceEEEE---ECCCCChhhHHHHHHHHHHcCCEEEEECcccccceEC-C----eeeccc---CCEEEEECCCCCcCCcCC
Confidence 3555653 3578999999999999999999999999998765321 1 122221 267777877 8886 34
Q ss_pred cceeecC-HHHHHHHHhcC---Cc----c-----cccCCCcHHHHHHHHHHHHHH
Q psy2206 373 GGYVAGS-KSTIDYIRANS---HV----R-----SYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 373 GG~v~gs-~~li~~l~~~~---~~----~-----~~s~s~~P~~~aaalaaL~~l 414 (430)
||+++.+ +++++.++... .. + .+...+++..+++.+..++.+
T Consensus 213 gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~~~~~~~~ 267 (391)
T 3dr4_A 213 GGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIGLAQLERV 267 (391)
T ss_dssp CEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHHHHHHHTH
T ss_pred eEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHHHHHHHHH
Confidence 5777654 66776665321 10 1 112456777776666555444
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.7e-07 Score=96.51 Aligned_cols=93 Identities=16% Similarity=0.061 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhc------CcEEEEeccccccc---cCCC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKY------KAYLYVDEAHSIGA---LGPT 343 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y------~~~LivDEAh~~G~---lG~~ 343 (430)
+++|++++.+ ++++|++..+.+++|.+.|+++|.++|++| |++|+||+||+.++ +.+.
T Consensus 192 ~~~l~~~i~~-------------~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~ 258 (502)
T 3hbx_A 192 PQQAVDMVDE-------------NTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPE 258 (502)
T ss_dssp HHHHHHHCCT-------------TEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTT
T ss_pred HHHHHHHHhh-------------CCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcc
Confidence 5667666543 367888888888999999999999999999 99999999998554 2332
Q ss_pred CCccceecCCCCCCccEEEeCccchhcc-cc-ce-eecCHHHH
Q psy2206 344 GRGVTEYFGIDPREVDILMGTYTKSFGS-MG-GY-VAGSKSTI 383 (430)
Q Consensus 344 GrG~~e~~g~~~~~~dIv~~TlSKa~G~-~G-G~-v~gs~~li 383 (430)
.+. .+.+ ..+|++..+.+|.++. .| |+ ++.+++.+
T Consensus 259 ~~~---~~~~--~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~l 296 (502)
T 3hbx_A 259 LEW---DFRL--PLVKSINVSGHKYGLVYAGIGWVIWRNKEDL 296 (502)
T ss_dssp CCC---STTS--TTEEEEEEETTTTTCCCSSCEEEEESSGGGS
T ss_pred ccc---ccCC--CCceEEEECcccccCCCCCeEEEEEeCHHHh
Confidence 221 1222 3679999999998843 23 44 44555554
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.3e-06 Score=90.27 Aligned_cols=98 Identities=18% Similarity=0.084 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEecccccccc-CCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGAL-GPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~l-G~~GrG~~e~~ 351 (430)
+++|+++|++....| ...++|++....+++|.+.||++|.++|++||++|++|+||+.+.+ .+..+... .
T Consensus 219 ~~~L~~~i~~~~~~g-------~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~--~ 289 (486)
T 1js3_A 219 ASALQEALERDKAAG-------LIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLL--N 289 (486)
T ss_dssp HHHHHHHHHHHHHTT-------CEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGG--T
T ss_pred HHHHHHHHHHHHhCC-------CCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHh--c
Confidence 799999997643111 1234677777778999999999999999999999999999987764 23333321 2
Q ss_pred CCCCCCccEEEeCccchhccc-c-ceeecC-HH
Q psy2206 352 GIDPREVDILMGTYTKSFGSM-G-GYVAGS-KS 381 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~~-G-G~v~gs-~~ 381 (430)
++ ..+|+++.+++|.++++ | |+++.+ +.
T Consensus 290 g~--~~adsi~~~~hK~~~~p~~~G~l~~~~~~ 320 (486)
T 1js3_A 290 GV--EFADSFNFNPHKWLLVNFDCSAMWVKRRT 320 (486)
T ss_dssp TG--GGCSEEEECHHHHSSCCSSCEEEEESCHH
T ss_pred Cc--cccCeeEEchhhhcCCCcceEEEEEeCHH
Confidence 33 24688999999998753 3 666654 44
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-06 Score=91.07 Aligned_cols=101 Identities=21% Similarity=0.076 Sum_probs=70.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEecccccccc-CCCCCccce
Q psy2206 271 SAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGAL-GPTGRGVTE 349 (430)
Q Consensus 271 r~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~l-G~~GrG~~e 349 (430)
-.+++|+++|++....+ ..+++|++....+++|.+.||++|.++|++||+++++|+||+.+++ .+..++..
T Consensus 216 ~d~~~L~~~i~~~~~~~-------~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~- 287 (475)
T 3k40_A 216 MRGAALEKAIEQDVAEG-------LIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLM- 287 (475)
T ss_dssp CCHHHHHHHHHHHHHTT-------CEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGG-
T ss_pred cCHHHHHHHHHHHHHCC-------CccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHh-
Confidence 34899999998743111 1245566666677799999999999999999999999999987753 33222221
Q ss_pred ecCCCCCCccEEEeCccchhcccc--c-eeecCHHH
Q psy2206 350 YFGIDPREVDILMGTYTKSFGSMG--G-YVAGSKST 382 (430)
Q Consensus 350 ~~g~~~~~~dIv~~TlSKa~G~~G--G-~v~gs~~l 382 (430)
.++ ..+|.++.+++|.++.+. | +++.+++.
T Consensus 288 -~gi--~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~ 320 (475)
T 3k40_A 288 -KGI--ESADSFNFNPHKWMLVNFDCSAMWLKDPSW 320 (475)
T ss_dssp -TTG--GGCSEEEECHHHHSSCCSSCEEEEESSGGG
T ss_pred -cCc--ccCCEEEECchhccCCCCceEEEEEeCHHH
Confidence 233 246999999999987542 3 44444544
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.30 E-value=5.8e-07 Score=92.38 Aligned_cols=85 Identities=16% Similarity=0.141 Sum_probs=61.4
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCC-ccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR-GVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr-G~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
++++|+..++.+++|.+.+ +++|+++|+++++++|+||+|.-..+|..-. ... ..+ .......|++.||||+|+
T Consensus 190 ~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~s~SK~~~ 268 (420)
T 4h51_A 190 GSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLF-ARRGIEVLLAQSFSKNMG 268 (420)
T ss_dssp SCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHH-HHTTCCCEEEEECTTTSC
T ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhH-HhhCceEEEEeccccccc
Confidence 5778899999999999886 8899999999999999999997544442100 000 000 011233688999999999
Q ss_pred ccc---ceeecCHH
Q psy2206 371 SMG---GYVAGSKS 381 (430)
Q Consensus 371 ~~G---G~v~gs~~ 381 (430)
++| ||+++...
T Consensus 269 ~~G~RvG~~~~~~~ 282 (420)
T 4h51_A 269 LYSERAGTLSLLLK 282 (420)
T ss_dssp CGGGCEEEEEEECS
T ss_pred cccCceEEEEeccc
Confidence 999 88876543
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=6.1e-07 Score=91.83 Aligned_cols=90 Identities=14% Similarity=0.086 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhc------CcEEEEecccccccc---CCC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKY------KAYLYVDEAHSIGAL---GPT 343 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y------~~~LivDEAh~~G~l---G~~ 343 (430)
+++|+++|.+ ++++|++..+.+++|.+.|+++|.++|++| +++|+||+||+.++. .+.
T Consensus 177 ~~~l~~~i~~-------------~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~ 243 (452)
T 2dgk_A 177 PKRMIEACDE-------------NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPD 243 (452)
T ss_dssp HHHHHHHCCT-------------TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTT
T ss_pred HHHHHHHHhh-------------CCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCcc
Confidence 6777776643 367788888888999999999999999996 999999999987653 222
Q ss_pred CCccceecCCCCCCccEEEeCccchhcc-cc-ceeecCH
Q psy2206 344 GRGVTEYFGIDPREVDILMGTYTKSFGS-MG-GYVAGSK 380 (430)
Q Consensus 344 GrG~~e~~g~~~~~~dIv~~TlSKa~G~-~G-G~v~gs~ 380 (430)
++ +.+....+|+++.+++|.+.. .| |+++.+.
T Consensus 244 ~~-----~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~ 277 (452)
T 2dgk_A 244 IV-----WDFRLPRVKSISASGHKFGLAPLGCGWVIWRD 277 (452)
T ss_dssp CC-----CSTTSTTEEEEEEETTTTTCCCSSCEEEEESS
T ss_pred ch-----hhcCCCCCcEEEECcccccCCCCCeEEEEEcC
Confidence 11 111123578899999995532 22 7777743
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=98.25 E-value=2.6e-06 Score=85.57 Aligned_cols=121 Identities=21% Similarity=0.293 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++.... .++++|+ +.+++|.+.|+++|.++|+ ||++||+|++|++|..-. ++ ..|
T Consensus 116 ~~~l~~~i~~~~----------~~tk~v~---~~~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~~-~~----~~g 176 (377)
T 3ju7_A 116 KTVLWDKIEELK----------EEVAIVV---PYATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMNG-GM----HYG 176 (377)
T ss_dssp HHHHHHHHHHHG----------GGEEEEC---CBCGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEET-TE----ETT
T ss_pred HHHHHHHHhcCC----------CCceEEE---EECCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeEC-CE----ecc
Confidence 688888874310 0255666 3456799999999999999 999999999999775311 11 221
Q ss_pred CCCCCccEEEeCc--cchhcc-ccceeec-CHHHHHHHHhcCCc----------ccccCCCcHHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTY--TKSFGS-MGGYVAG-SKSTIDYIRANSHV----------RSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 353 ~~~~~~dIv~~Tl--SKa~G~-~GG~v~g-s~~li~~l~~~~~~----------~~~s~s~~P~~~aaalaaL~~l 414 (430)
-. -.|+.+.|| +|.++. .||+++. ++++++.++..... ..+...++++.++.++..++.+
T Consensus 177 ~~--~~d~~~~S~~~~K~l~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~l 250 (377)
T 3ju7_A 177 QD--FSGMIIYSFHATKPFGIGEGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFNCKMSEYAAAIGIATMKKW 250 (377)
T ss_dssp TT--CSSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCBCCCCHHHHHHHHHHHHTH
T ss_pred CC--CCcEEEEECCCCCcCCCCCcEEEEECCHHHHHHHHHHHhcCCCCCCceeeccccCCCCHHHHHHHHHHHHHH
Confidence 11 125666676 599874 4566654 67887777653211 1234567888888777777655
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.7e-06 Score=88.45 Aligned_cols=102 Identities=19% Similarity=0.137 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccc-cCCCCCccc-ee
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGA-LGPTGRGVT-EY 350 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~-lG~~GrG~~-e~ 350 (430)
+++||++|++.. +....+|++.+.+.-.+.+.||++|.++|++||++|+|||||+..+ +. ..+. +.
T Consensus 202 ~e~le~aI~e~g---------a~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~---~~lp~sA 269 (501)
T 3hl2_A 202 LKAVEAKVQELG---------PDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKC---MHLIQQG 269 (501)
T ss_dssp HHHHHHHHHHHC---------GGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHH---HHHHHHH
T ss_pred HHHHHHHHHhcC---------CCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhh---hhhHHHH
Confidence 688999998741 2345566665544433567899999999999999999999998654 11 1111 11
Q ss_pred cCCCCCCccEEEeCccchhcc-ccceee--cCHHHHHHHHh
Q psy2206 351 FGIDPREVDILMGTYTKSFGS-MGGYVA--GSKSTIDYIRA 388 (430)
Q Consensus 351 ~g~~~~~~dIv~~TlSKa~G~-~GG~v~--gs~~li~~l~~ 388 (430)
+.+ ..+|+++.|..|.+-. +||.++ -++++++.+..
T Consensus 270 ~~~--GrAD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~ 308 (501)
T 3hl2_A 270 ARV--GRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISK 308 (501)
T ss_dssp HHH--SCCCEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHH
T ss_pred Hhc--CCCcEEEecccccceeecCceEEEeCCHHHHHHHHH
Confidence 111 1369999999998743 466554 36777777654
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=2.9e-06 Score=88.07 Aligned_cols=104 Identities=18% Similarity=0.193 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++||++|++.. +..+.+|++.+-+...|.+.||++|.++|++||++|+|||||+..+. ....+.. .+
T Consensus 184 ~~~le~aI~~~~---------~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~--~~~~l~~-~a 251 (450)
T 3bc8_A 184 LKAVEAKIQELG---------PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSS--KCMHLIQ-QG 251 (450)
T ss_dssp HHHHHHHHHHHC---------GGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCH--HHHHHHH-HH
T ss_pred HHHHHHHHHhcC---------CCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhh--hhHhHHH-HH
Confidence 789999998741 12456666665555457889999999999999999999999975431 0011110 01
Q ss_pred CCCCCccEEEeCccchhcc-cc-ceeec-CHHHHHHHHh
Q psy2206 353 IDPREVDILMGTYTKSFGS-MG-GYVAG-SKSTIDYIRA 388 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~-~G-G~v~g-s~~li~~l~~ 388 (430)
+....+|+++.|.+|.+.+ .| +++.. +++.++.+..
T Consensus 252 ~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~ 290 (450)
T 3bc8_A 252 ARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISK 290 (450)
T ss_dssp HHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHH
T ss_pred hcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHH
Confidence 1102468999999999864 34 44443 6777766654
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.3e-05 Score=81.56 Aligned_cols=79 Identities=22% Similarity=0.328 Sum_probs=57.6
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEe-ccccccccCCCCCccceecCCCCCCccEEEeCccchhc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVD-EAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG---- 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivD-EAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G---- 370 (430)
++++|++..+ +++|.+.|+++|.++|++||+++++| ++++.|.+... ..+ .+|++++| +|.||
T Consensus 196 ~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~-----~~~-----g~D~~~~s-~kk~~~~~~ 263 (438)
T 1wyu_A 196 EVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPP-----GAY-----GADIAVGD-GQSLGLPMG 263 (438)
T ss_dssp TEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCH-----HHH-----TCSEEEEE-CTTTTCCCG
T ss_pred CeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCCC-----ccC-----CCCEEEEC-CcccCCCcc
Confidence 4667777778 99999999999999999999999977 33555543211 122 24888888 77654
Q ss_pred --ccc-ceeecCHHHHHHH
Q psy2206 371 --SMG-GYVAGSKSTIDYI 386 (430)
Q Consensus 371 --~~G-G~v~gs~~li~~l 386 (430)
.+| |++++++++++.+
T Consensus 264 ~~Gp~~G~l~~~~~~~~~l 282 (438)
T 1wyu_A 264 FGGPHFGFLATKKAFVRQL 282 (438)
T ss_dssp GGCSCCEEEEECGGGGGGC
T ss_pred CCCCCeeEEEEcHHHHHhC
Confidence 233 8999999887765
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=6e-05 Score=76.84 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=64.6
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc---
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG--- 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G--- 373 (430)
+++|++..+.+++|.+.+ + +++ ++..+.||++ +.+ ...+. .+. .+.+|+++||||.+|++|
T Consensus 197 ~k~v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~----~~~-~~s~~---~~~-~~~~i~~~S~SK~~g~~G~Ri 260 (427)
T 2hox_A 197 QYIEMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVY----YWP-HYTPI---KYK-ADEDILLFTMSKFTGHSGSRF 260 (427)
T ss_dssp GEEEEEESSCTTTCCCCC-C----SST--TCEEEEECTT----CST-TTSCC---CSC-BCCSEEEEEHHHHTSCGGGCC
T ss_pred ceEEEEcCCCCCcccccH-H----HHc--CCCEEEeecc----cCC-CCCcc---ccC-CCceEEEEeChhcCCCCCceE
Confidence 456667789999999998 3 233 5668888876 221 11111 122 356899999999999988
Q ss_pred ceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 374 GYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 374 G~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
||+++ ++++++.++... ..... ..+++...++.++|+.
T Consensus 261 G~~~~~~~~l~~~l~~~~-~~~~~-~~~~~~q~a~~~~L~~ 299 (427)
T 2hox_A 261 GWALIKDESVYNNLLNYM-TKNTE-GTPRETQLRSLKVLKE 299 (427)
T ss_dssp EEEEECCHHHHHHHHHHH-HHHTS-SCCHHHHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHH-HhcCC-CCCHHHHHHHHHHhhc
Confidence 99999 599999888743 22222 3444444445555553
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00018 Score=74.63 Aligned_cols=87 Identities=22% Similarity=0.282 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcC-ccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEG-IFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~-v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
.+.|+++.++. +.++||.-. .| -...|+++++++|++.|++|++|=||-.|++.. |+...
T Consensus 192 yd~~~~~A~~~------------kPklIi~G~SaY---~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~---g~~ps- 252 (490)
T 3ou5_A 192 YNQLALTARLF------------RPRLIIAGTSAY---ARLIDYARMREVCDEVKAHLLADMAHISGLVAA---KVIPS- 252 (490)
T ss_dssp HHHHHHHHHHH------------CCSEEEECCSSC---CSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHT---TSSCC-
T ss_pred HHHHHHHHhhc------------CCCeEEECCccC---ccccCHHHHHHHHhhcccEEEechhhhhhhhcc---cccCC-
Confidence 68888888774 233555543 34 445689999999999999999999999887531 32221
Q ss_pred CCCCCCccEEEeCccchh-ccccceeecCH
Q psy2206 352 GIDPREVDILMGTYTKSF-GSMGGYVAGSK 380 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~-G~~GG~v~gs~ 380 (430)
++ ...||+++|.+|+| |..||.|.+++
T Consensus 253 P~--~~ADvVTtTTHKTLrGPrGG~Il~~~ 280 (490)
T 3ou5_A 253 PF--KHADIVTTTTHKTLRGARSGLIFYRK 280 (490)
T ss_dssp GG--GTCSEEEEESSSTTCSCSCEEEEEEC
T ss_pred cc--ccceEEeccccccccCCCceEEEecc
Confidence 12 24699999999999 67789998765
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00014 Score=73.44 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=50.5
Q ss_pred Cccc-CCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCccccc
Q psy2206 64 RPVT-SVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIAS 139 (430)
Q Consensus 64 rpi~-~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~ 139 (430)
+.+. +..|+++... ++++|+|+|||||||. .+|.+++++.+++++||.+.+++|...|+
T Consensus 48 ~~~~~~~~g~~~~~~----------------g~~~id~~~~~~lg~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~G~ 107 (427)
T 2w8t_A 48 IVMEQVKSPTEAVIR----------------GKDTILLGTYNYMGMT-FDPDVIAAGKEALEKFGSGTCGSRMLNGT 107 (427)
T ss_dssp CCCSEEEETTEEEET----------------TEEEEECSCCCTTCGG-GCHHHHHHHHHHHHHHCSCCCSCTTTTCC
T ss_pred eeccccCCCceEeeC----------------CceEEEEECcccccCC-CCHHHHHHHHHHHHHhCCCCcccccccCC
Confidence 4566 7888888653 2489999999999998 58999999999999999999999888885
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00064 Score=68.24 Aligned_cols=114 Identities=13% Similarity=0.113 Sum_probs=76.3
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-ce
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-GY 375 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G~ 375 (430)
+++|.+-..-+.+|.+.|. +++ +|++++||-++++|.+ .++.++.|+++.|-.|.+|.+| |+
T Consensus 141 t~lv~~~~~e~~tG~~~~~-----i~~-~~~~~~vD~~q~~g~~-----------~id~~~~d~~~~s~~K~~gp~G~g~ 203 (361)
T 3m5u_A 141 ADYAYICSNNTIYGTQYQN-----YPK-TKTPLIVDASSDFFSR-----------KVDFSNIALFYGGVQKNAGISGLSC 203 (361)
T ss_dssp SSEEEEESEETTTTEECSS-----CCC-CSSCEEEECGGGTTSS-----------CCCCTTEEEEEEETTTTSSCTTCEE
T ss_pred CCEEEEeCCCCCcceeCCc-----ccc-cCCEEEEEcccccCCC-----------CCCcccCCEEEEechhccCCCccEE
Confidence 3455555555567988662 444 4999999999987643 2333457999999999999888 88
Q ss_pred eecCHHHHHHHHhc-CC-----------cccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 376 VAGSKSTIDYIRAN-SH-----------VRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 376 v~gs~~li~~l~~~-~~-----------~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
+..++++.+.+... .. ...+ .+++...+.+..++|+.+.++.|.+...++.+
T Consensus 204 l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~ 267 (361)
T 3m5u_A 204 IFIRKDMLERSKNKQIPSMLNYLTHAENQSLF-NTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNS 267 (361)
T ss_dssp EEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCS-SCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred EEEcHHHHhhhcCCCCCceeehHHHhhcCCCC-CCccHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 98999888766541 11 1112 23555666677789999887645555555543
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00013 Score=73.89 Aligned_cols=115 Identities=12% Similarity=0.079 Sum_probs=73.0
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-ce
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-GY 375 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G~ 375 (430)
+++|.+-..-+.+|.+.|+ +|+++|++++||=++++|.+ .++.++.++++.|-.|.+|.+| |+
T Consensus 153 t~lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~-----------~id~~~~~~~~~s~~K~~gp~G~g~ 216 (377)
T 3e77_A 153 ASYVYYCANETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSK-----------PVDVSKFGVIFAGAQKNVGSAGVTV 216 (377)
T ss_dssp CSCEEEESEETTTTEECSS-----CCCCTTCCEEEECTTTTTSS-----------CCCGGGCSEEEEEGGGTTSCTTCEE
T ss_pred ccEEEEeCccCchheEchh-----hhccCCCEEEEEcccccCCC-----------CCchhhcCEEEEecccccCCCccEE
Confidence 3345554555557999998 47899999999999987643 2222344678899999999888 77
Q ss_pred eecCHHHHHHHH-----------hcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 376 VAGSKSTIDYIR-----------ANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 376 v~gs~~li~~l~-----------~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
+..++++++.+. .......+. +++...+.+..++|+.++++.|.+...++.+
T Consensus 217 l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~-Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~ 279 (377)
T 3e77_A 217 VIVRDDLLGFALRECPSVLEYKVQAGNSSLYN-TPPCFSIYVMGLVLEWIKNNGGAAAMEKLSS 279 (377)
T ss_dssp EEEETTSCSCCCTTSCGGGCHHHHHTTTTCSS-CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred EEEcHHHHhhccCCCCchhhHHHHhhcCCCCC-CchHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 776665532111 111111122 3555566667788998877645555554443
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00082 Score=67.03 Aligned_cols=47 Identities=19% Similarity=0.212 Sum_probs=42.2
Q ss_pred CcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCcccccc
Q psy2206 93 TESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASM 140 (430)
Q Consensus 93 ~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~~ 140 (430)
+++++|+|+|||||||+ .+|.+++++.+++++||.+.++++...|+.
T Consensus 57 ~g~~~ld~~s~~~l~~~-~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~ 103 (409)
T 3kki_A 57 ASPDDIILQSNDYLALA-NHPLIKARLAKSLLEEQQSLFMSASFLQND 103 (409)
T ss_dssp CCTTSEECCCSCTTCCT-TCHHHHHHHHHHHHSCCCCCCSBGGGGCST
T ss_pred CCCceEEeeccCccCCc-CCHHHHHHHHHHHHHcCCCCCccccccCCc
Confidence 34689999999999999 589999999999999999999888888854
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0018 Score=63.66 Aligned_cols=59 Identities=25% Similarity=0.336 Sum_probs=50.9
Q ss_pred CcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCccccc
Q psy2206 64 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIAS 139 (430)
Q Consensus 64 rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~ 139 (430)
.++....|.+|...+ +++|+|++|||||+. .+|.+.+++.+++++|+.+.+++|...|+
T Consensus 28 ~~~~~~~g~~v~~~g----------------~~~id~~~~~~~g~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~g~ 86 (399)
T 3tqx_A 28 RIITSPQNAEIKVGE----------------KEVLNFCANNYLGLA-DHPALIKTAQTVVEQYGFGMASVRFICGT 86 (399)
T ss_dssp CCBCSCSSSEEEETT----------------EEEEECSSCCTTSCT-TCHHHHHHHHHHHHHHCSCCCSCCCCCCC
T ss_pred ccccCCCCceEeeCC----------------eeEEEeeccCccccc-CCHHHHHHHHHHHHHhCCCCCCcCccccC
Confidence 667899999987532 489999999999997 58999999999999999999888887664
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.00083 Score=68.05 Aligned_cols=115 Identities=11% Similarity=0.048 Sum_probs=70.2
Q ss_pred eEEEEEcCccCCCCcc-cCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-c
Q psy2206 297 KILIVVEGIFSMDGSI-VRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-G 374 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i-~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G 374 (430)
+++|.+-..-+.+|.+ .|+++|. +|+++++|=++++|.+ .++.++.|+++.|-.|.+|..| |
T Consensus 167 t~lV~~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~-----------pidv~~~~~~~~s~hK~lGP~G~g 230 (386)
T 3qm2_A 167 AAYLHYCPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSA-----------PLDVSRYGVIYAGAQKNIGPAGLT 230 (386)
T ss_dssp CSCEEECSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSS-----------CCCGGGCSEEEEETTTTTCCTTEE
T ss_pred CcEEEEECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCC-----------CCCccccCEEEEecccccCCCccE
Confidence 4456666666667995 8898885 7999999999987643 2222344677889999999777 8
Q ss_pred eeecCHHHHHHHH-----------hcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 375 YVAGSKSTIDYIR-----------ANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 375 ~v~gs~~li~~l~-----------~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
++..++++++.+. .......+.| ++.+.+.+..+||+.+.++.|.+...++.+
T Consensus 231 ~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gT-p~v~~i~~l~~Al~~~~~~gG~~~i~~~~~ 294 (386)
T 3qm2_A 231 LVIVREDLLGKAHESCPSILDYTVLNDNDSMFNT-PPTFAWYLSGLVFKWLKAQGGVAAMHKINQ 294 (386)
T ss_dssp EEEEEGGGCSCCCTTSCGGGCHHHHHHC--------CCSHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred EEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCC-CcHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8877776632111 1111112222 333445566778888876534454444433
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=94.42 E-value=0.069 Score=52.47 Aligned_cols=59 Identities=27% Similarity=0.296 Sum_probs=46.5
Q ss_pred cCCcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCcc
Q psy2206 62 FNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGE 136 (430)
Q Consensus 62 ~~rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~ 136 (430)
+...+.+..|.++... +++++|+|+++|+||+. .+|.+.+++.+++++||.+.++++..
T Consensus 27 ~~~~~~~~~g~~~~~~---------------~g~~~id~~~~~~~g~~-~~~~v~~a~~~~~~~~~~~~~~~~~~ 85 (401)
T 1fc4_A 27 EERIITSAQQADITVA---------------DGSHVINFCANNYLGLA-NHPDLIAAAKAGMDSHGFGMASVRFI 85 (401)
T ss_dssp CCCCBCSCSSSEEEBT---------------TSCEEEECCCSCTTSCT-TCHHHHHHHHHHHHHHCSCCCSCHHH
T ss_pred eeeeeccCCCceEEee---------------CCccEEEeeccCccccc-CCHHHHHHHHHHHHHhCCCCCCCCcc
Confidence 3456778899987631 23589999999999986 48999999999999999877665543
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.054 Score=52.92 Aligned_cols=58 Identities=21% Similarity=0.279 Sum_probs=46.2
Q ss_pred CcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCcccc
Q psy2206 64 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIA 138 (430)
Q Consensus 64 rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g 138 (430)
..+....|.++...+ +++|+|++++||||. .++.+++++.++++++|.+.++++...|
T Consensus 24 ~~~~~~~g~~~~~~g----------------~~~id~~~~~~~~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~g 81 (384)
T 1bs0_A 24 YPVAQGAGRWLVADD----------------RQYLNFSSNDYLGLS-HHPQIIRAWQQGAEQFGIGSGGSGHVSG 81 (384)
T ss_dssp CCCSBCSSSEEEETT----------------EEEEECSCCCTTSGG-GCHHHHHHHHHHHHHHCSCCCSBTTTTC
T ss_pred ccccCCCCceEEECC----------------ceEEEeeccCccCCC-CCHHHHHHHHHHHHHhCCCCCCcCcccC
Confidence 445788898887433 479999999999986 4899999999999999987766665444
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.062 Score=52.87 Aligned_cols=60 Identities=17% Similarity=0.276 Sum_probs=47.3
Q ss_pred cCCcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCcccc
Q psy2206 62 FNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIA 138 (430)
Q Consensus 62 ~~rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g 138 (430)
+..++.+..|.++.+.+ +++|+|+++++||+. .++.+.+++.+++++++.+.++++...|
T Consensus 26 ~~~~~~~~~g~~~~~~g----------------~~~idl~~~~~~~~~-~~~~v~~a~~~~~~~~~~~~~~~~~~~g 85 (398)
T 3a2b_A 26 YFRPIQSKQDTEVKIDG----------------RRVLMFGSNSYLGLT-TDTRIIKAAQDALEKYGTGCAGSRFLNG 85 (398)
T ss_dssp SSCCBCSCSSSEEEETT----------------EEEEECSCSCTTCGG-GCHHHHHHHHHHHHHHCSCCCSBTTTTC
T ss_pred ceeeecCCCCceEEECC----------------ceEEEeecccccCCC-CCHHHHHHHHHHHHHcCCCCCCcCcccC
Confidence 44567899999997433 479999999999997 4889999999999998776655554444
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=93.11 E-value=0.061 Score=52.94 Aligned_cols=47 Identities=15% Similarity=0.264 Sum_probs=39.3
Q ss_pred CCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCccccc
Q psy2206 92 GTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIAS 139 (430)
Q Consensus 92 g~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~ 139 (430)
|+++++++|++|+|+|++. +|.+.+++.+++++++.++++++...+.
T Consensus 43 ~~g~~~i~~~~~~~~~~~~-~p~v~~a~~~~~~~~~~~~~~~~~~~~~ 89 (401)
T 2bwn_A 43 GGKQDITVWCGNDYLGMGQ-HPVVLAAMHEALEAVGAGSGGTRNISGT 89 (401)
T ss_dssp SCEEEEEECSCSCTTSGGG-CHHHHHHHHHHHHHHCSCCCSBTTTBCC
T ss_pred CCCCcEEEeeCCCcccCCC-CHHHHHHHHHHHHHcCCCCCCcCcccCC
Confidence 3567899999999999984 8899999999999999877766655543
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=84.37 E-value=0.18 Score=48.62 Aligned_cols=31 Identities=6% Similarity=-0.167 Sum_probs=27.4
Q ss_pred eeEE-eeeccccCCCCCChhhHHHHHHHHhhhC
Q psy2206 96 TCLN-LASYNYLGFGENTGLCTERSKESVKQSG 127 (430)
Q Consensus 96 ~~ln-l~SyNYLGfa~~~~~~~~a~~~al~~yG 127 (430)
++++ |.||||||++ .+|.+.++..+++++||
T Consensus 4 ~~~~~~~~~~~l~~~-~~p~~~~~~~~~~~~~~ 35 (357)
T 3lws_A 4 RLRTSFQQTTGQISG-HGKRNVGVLKTAFAAVA 35 (357)
T ss_dssp HHHHHHHTCSEESSB-SSCCBHHHHHHHHTTSC
T ss_pred hhhhHHHhhcccccC-CCCCCHHHHHHHHHHhh
Confidence 4555 8999999999 69999999999999987
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=81.78 E-value=1.1 Score=44.92 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=38.2
Q ss_pred CcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCC---CccCCCCCcHHHHHHHHHHHHHhC
Q psy2206 200 NRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASY---NYLGFGENTGLCTERSKESVKQSG 264 (430)
Q Consensus 200 ~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~---nYLGl~~~~~~v~~a~~~ai~~yG 264 (430)
+..+.++.|++++..+ | +++|||+++ ++||+. + +.+++++.+++++++
T Consensus 33 ~~~~~~~~g~~~~d~~-------------g--~~~lD~~~~~~~~~lG~~-~-~~v~~a~~~~~~~~~ 83 (449)
T 3a8u_X 33 PRLIVAAEGSWLVDDK-------------G--RKVYDSLSGLWTCGAGHT-R-KEIQEAVAKQLSTLD 83 (449)
T ss_dssp CCCEEEEEBTEEEETT-------------C--CEEEETTHHHHTCTTCBS-C-HHHHHHHHHHTTTCS
T ss_pred CceEEeeecCEEEECC-------------C--CEEEECCccHhhccCCCC-C-HHHHHHHHHHHHhCC
Confidence 3567888999998754 6 789999765 589988 4 588999999988765
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=80.86 E-value=3.4 Score=40.77 Aligned_cols=45 Identities=18% Similarity=0.250 Sum_probs=34.7
Q ss_pred cccCCCCEEEEecCCCCCCCccccccCCccceeeecCC---CccCCCCCcHHHHHHHHHHHHHhC
Q psy2206 203 VTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASY---NYLGFGENTGLCTERSKESVKQSG 264 (430)
Q Consensus 203 i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~---nYLGl~~~~~~v~~a~~~ai~~yG 264 (430)
+.++.|++++..+ | +++|||+++ ++||+. + +.+++++.+++++++
T Consensus 29 ~~~~~g~~~~d~~-------------g--~~ylD~~~~~~~~~lg~~-~-p~v~~a~~~~~~~~~ 76 (429)
T 1s0a_A 29 VVSAEGCELILSD-------------G--RRLVDGMSSWWAAIHGYN-H-PQLNAAMKSQIDAMS 76 (429)
T ss_dssp EEEEEBTEEEETT-------------S--CEEEESSTTTTTCTTCBS-C-HHHHHHHHHHHHHCS
T ss_pred EEeeeeeEEEeCC-------------C--CEEEEcCccHhhccCCCC-C-HHHHHHHHHHHHhcc
Confidence 5677788877543 6 789999887 588874 4 588999999998864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 430 | ||||
| d1fc4a_ | 401 | c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {E | 1e-23 | |
| d1fc4a_ | 401 | c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {E | 0.001 | |
| d1fc4a_ | 401 | c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {E | 0.001 | |
| d2bwna1 | 396 | c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rho | 6e-16 | |
| d2bwna1 | 396 | c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rho | 5e-04 | |
| d2bwna1 | 396 | c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rho | 0.003 | |
| d1bs0a_ | 383 | c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-a | 6e-14 | |
| d1bs0a_ | 383 | c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-a | 1e-06 | |
| d1bs0a_ | 383 | c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-a | 2e-05 | |
| d2v1pa1 | 467 | c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop | 1e-07 | |
| d2z67a1 | 434 | c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase ( | 4e-06 |
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Score = 99.9 bits (248), Expect = 1e-23
Identities = 42/127 (33%), Positives = 69/127 (54%), Gaps = 2/127 (1%)
Query: 290 HSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTE 349
R +LI +G+FSMDG I L + L +KY A + VD++H++G +G GRG E
Sbjct: 171 AREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHE 230
Query: 350 YFGIDPREVDILMGTYTKSF-GSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQIL 408
Y + R VDI+ GT K+ G+ GGY A K ++++R S ++ S+ P + +
Sbjct: 231 YCDVMGR-VDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASI 289
Query: 409 TSMRIIM 415
+ ++
Sbjct: 290 KVLEMVE 296
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Score = 38.3 bits (88), Expect = 0.001
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 16/70 (22%)
Query: 64 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESV 123
R +TS A IT+ D +N + NYLG + L +K +
Sbjct: 29 RIITSAQQADITVADGSH---------------VINFCANNYLGLANHPDLI-AAAKAGM 72
Query: 124 KQSGCALCSP 133
G + S
Sbjct: 73 DSHGFGMASV 82
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Score = 38.3 bits (88), Expect = 0.001
Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 16/70 (22%)
Query: 201 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESV 260
R +TS A IT+ D +N + NYLG + L +K +
Sbjct: 29 RIITSAQQADITVADGSH---------------VINFCANNYLGLANHPDLI-AAAKAGM 72
Query: 261 KQSGCALCSP 270
G + S
Sbjct: 73 DSHGFGMASV 82
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Score = 76.9 bits (188), Expect = 6e-16
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 1/134 (0%)
Query: 286 EGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGR 345
+ P LI E ++SMDG + EI + ++ A Y+DE H++G GP G
Sbjct: 167 RELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGA 226
Query: 346 GVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAM 405
GV E G+ R +DI GT K++G GGY+A S +D +R+ + ++TS+PP +A
Sbjct: 227 GVAERDGLMHR-IDIFNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAA 285
Query: 406 QILTSMRIIMGLEN 419
S+ + E
Sbjct: 286 GAQASIAFLKTAEG 299
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Score = 39.5 bits (91), Expect = 5e-04
Identities = 20/127 (15%), Positives = 37/127 (29%), Gaps = 21/127 (16%)
Query: 192 YRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGL 251
YR +D R + P A D G + +YLG G++ +
Sbjct: 19 YRTFID-IEREKGAFPKAQWNRPD-------------GGKQDITVWCGNDYLGMGQHPVV 64
Query: 252 CTERSKESVKQSGCALCSPSAPSSLEAGLQ--KALLEGQPHSGKPWRKILIVVEGIFSMD 309
E+++ G + +G LE + L+ + D
Sbjct: 65 L-AAMHEALEAVGAGSGG----TRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNAND 119
Query: 310 GSIVRLP 316
++ L
Sbjct: 120 ATLSTLR 126
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Score = 37.2 bits (85), Expect = 0.003
Identities = 14/82 (17%), Positives = 24/82 (29%), Gaps = 15/82 (18%)
Query: 55 YRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGL 114
YR +D R + P A D G + +YLG G++ +
Sbjct: 19 YRTFID-IEREKGAFPKAQWNRPD-------------GGKQDITVWCGNDYLGMGQHPVV 64
Query: 115 CTERSKESVKQSGCALCSPSGE 136
E+++ G
Sbjct: 65 L-AAMHEALEAVGAGSGGTRNI 85
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Score = 70.7 bits (172), Expect = 6e-14
Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 3/122 (2%)
Query: 294 PWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGI 353
+ ++V EG+FSMDG L EI ++ ++ +L VD+AH G +G GRG +
Sbjct: 165 CPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKV 224
Query: 354 DPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413
P + + G K FG G V S + DY+ + Y+TSMPP A + S+ +
Sbjct: 225 KPELLVVTFG---KGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAV 281
Query: 414 IM 415
I
Sbjct: 282 IR 283
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Score = 48.0 bits (113), Expect = 1e-06
Identities = 18/129 (13%), Positives = 39/129 (30%), Gaps = 20/129 (15%)
Query: 64 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESV 123
PV G + DR+ LN +S +YLG + + ++
Sbjct: 23 YPVAQGAGRWLVADDRQ----------------YLNFSSNDYLGLSHHPQI-IRAWQQGA 65
Query: 124 KQSGCALCSPSGEIASMLSKGASKSNILFQAHTNGFANGISKSNGLLSSNGGYPDLYEKF 183
+Q G + A + + A G++ + +G ++ + K
Sbjct: 66 EQFGIGSGGSGHVSGYSVVHQALEEEL---AEWLGYSRALLFISGFAANQAVIAAMMAKE 122
Query: 184 VLFYSRYVY 192
+ +
Sbjct: 123 DRIAADRLS 131
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Score = 44.2 bits (103), Expect = 2e-05
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 17/70 (24%)
Query: 201 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESV 260
PV G + DR+ LN +S +YLG + + ++
Sbjct: 23 YPVAQGAGRWLVADDRQ----------------YLNFSSNDYLGLSHHPQI-IRAWQQGA 65
Query: 261 KQSGCALCSP 270
+Q G
Sbjct: 66 EQFGIGSGGS 75
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Score = 51.1 bits (121), Expect = 1e-07
Identities = 21/147 (14%), Positives = 41/147 (27%), Gaps = 10/147 (6%)
Query: 282 KALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALG 341
+ +E + P+ I S+ L + + KY + +D A
Sbjct: 173 ERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAY 232
Query: 342 PTGRGVTEYFGIDPREV--------DILMGTYTKSFGSMGGYVAGSKST--IDYIRANSH 391
+ EY ++ D+L + K G + K D
Sbjct: 233 FIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRT 292
Query: 392 VRSYATSMPPPVAMQILTSMRIIMGLE 418
+ P ++ R+ +GL
Sbjct: 293 LCVVQEGFPTYGGLEGGAMERLAVGLY 319
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Score = 46.4 bits (109), Expect = 4e-06
Identities = 15/141 (10%), Positives = 40/141 (28%), Gaps = 7/141 (4%)
Query: 282 KALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALG 341
+ ++ + G ++ F + + EI ++ Y ++ A+
Sbjct: 200 ENAIKKEIELGNRPC---VLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAY--AIQN 254
Query: 342 PTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPP 401
+ VD ++ + K+ + G + ++I+ S S P
Sbjct: 255 NYYLEKLKKAFKYR--VDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGRASATP 312
Query: 402 PVAMQILTSMRIIMGLENGDE 422
V + +
Sbjct: 313 VVNTLVSLLSMGSKNYLELVK 333
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 430 | |||
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 100.0 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 100.0 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 100.0 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.82 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.82 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.79 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.78 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.77 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.76 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.75 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.63 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.41 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.37 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.33 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.31 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.26 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.26 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.24 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.19 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.06 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.05 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.04 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.04 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.02 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 98.96 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 98.89 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 98.89 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 98.89 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 98.87 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 98.86 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 98.86 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 98.83 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 98.81 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 98.78 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 98.77 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 98.76 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 98.76 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 98.75 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 98.74 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 98.74 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 98.73 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 98.71 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 98.69 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 98.66 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 98.66 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 98.64 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 98.64 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 98.59 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 98.59 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 98.58 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 98.55 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 98.55 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 98.51 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 98.43 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 98.42 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 98.41 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 98.38 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 98.34 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 98.33 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 98.33 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 98.33 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 98.32 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 98.3 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 98.24 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 98.16 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 98.14 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 98.02 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 97.95 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 97.86 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 97.85 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 97.83 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 97.81 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 97.71 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 97.68 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 97.46 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 97.45 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 97.44 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 97.41 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 97.16 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 96.78 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 96.4 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 96.31 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 96.24 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 95.94 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 94.94 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 94.22 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 90.97 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 83.21 |
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=100.00 E-value=6.2e-42 Score=348.94 Aligned_cols=214 Identities=26% Similarity=0.456 Sum_probs=185.5
Q ss_pred hhHHHHHHHHhhcccccccccCcccccCCCCE--EEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHH
Q psy2206 179 LYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAI--ITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERS 256 (430)
Q Consensus 179 l~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~--i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~ 256 (430)
+.+.++++...++||.+ +++.+..|.. +... ..+|..+++|||+|||||||++|| .+++++
T Consensus 6 ~~~~l~~l~~~g~~r~~-----~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~FsSndYLGL~~~p-~v~~a~ 68 (396)
T d2bwna1 6 LDKAIQKLHDEGRYRTF-----IDIEREKGAFPKAQWN-----------RPDGGKQDITVWCGNDYLGMGQHP-VVLAAM 68 (396)
T ss_dssp HHHHHHHHHHTTCCCCC-----CEEEECTTSTTEEEEE-----------CTTSCEEEEEECSCSCTTSGGGCH-HHHHHH
T ss_pred HHHHHHHHHHcCCCccc-----cccccccCCCCcceEe-----------ecCCCCeEEEEEEcccccCcCCCH-HHHHHH
Confidence 45678999999999988 4565555532 2221 112334899999999999999986 899999
Q ss_pred HHHHHHhCCCCCCCCC----------------------------------------------------------------
Q psy2206 257 KESVKQSGCALCSPSA---------------------------------------------------------------- 272 (430)
Q Consensus 257 ~~ai~~yG~g~~~sr~---------------------------------------------------------------- 272 (430)
++++++||+|+++||+
T Consensus 69 ~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g~e~all~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~ 148 (396)
T d2bwna1 69 HEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGI 148 (396)
T ss_dssp HHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHH
T ss_pred HHHHHHhCCCccccccccCCchHHHHHHHHHHHHhCCCceeeeecchHHHHHHHHHHhcccCCCceeehhhhhhccchhh
Confidence 9999999999999998
Q ss_pred --------------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEecccccc
Q psy2206 273 --------------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIG 338 (430)
Q Consensus 273 --------------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G 338 (430)
+++|+++++.. .+.++++||+|+||||+|+++||++|++||++|+++|||||||++|
T Consensus 149 ~ls~a~~~~f~Hnd~~~l~~l~~~~---------~~~~~~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vDeAHs~G 219 (396)
T d2bwna1 149 KRNAGPKRIFRHNDVAHLRELIAAD---------DPAAPKLIAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVG 219 (396)
T ss_dssp HHSCCCEEEECTTCHHHHHHHHHHS---------CTTSCEEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTT
T ss_pred hccccCceEeecchHHHhhhHHhhh---------cccCceeEEEEeeccCcccccccHhHHHHhhhhcceeeeccceeee
Confidence 25666666542 2346789999999999999999999999999999999999999999
Q ss_pred ccCCCCCccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 339 ALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 339 ~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
++|++|+|+++++++. .++||+++||||+||+.||||++++++++++++.+++++||+++||+.++++++++++++.+.
T Consensus 220 v~G~~G~G~~~~~~~~-~~~di~~gTlsKa~g~~Gg~v~~~~~~i~~l~~~~~~~ifStalpp~~~aa~~~al~i~~~~~ 298 (396)
T d2bwna1 220 MYGPRGAGVAERDGLM-HRIDIFNGTLAKAYGVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAE 298 (396)
T ss_dssp TSSTTSCCHHHHHTCG-GGCSEEEEESSSTTCSCCEEEEECHHHHHHHHHHCHHHHTSBCCCHHHHHHHHHHHHHHTSHH
T ss_pred eeccccccchhhcCCc-eeeeeeeecccccccccccccchhHHHHHHHHhhcchhhhcccCcHHHHHHHHHHHHHhhcch
Confidence 9999999999999986 678999999999999999999999999999999999999999999999999999999987654
Q ss_pred C
Q psy2206 419 N 419 (430)
Q Consensus 419 ~ 419 (430)
.
T Consensus 299 ~ 299 (396)
T d2bwna1 299 G 299 (396)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.5e-39 Score=325.41 Aligned_cols=220 Identities=30% Similarity=0.496 Sum_probs=194.5
Q ss_pred chhhHHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHH
Q psy2206 177 PDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERS 256 (430)
Q Consensus 177 ~~l~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~ 256 (430)
..|-+.+++.+..++||+. ++|.+++|++|++.| | +++|||+|||||||++|| .+++++
T Consensus 10 ~~~~~~l~~~~~~g~~r~~-----~~i~~~~g~~v~~~d-------------G--~~~l~f~s~dYLGl~~hp-~v~~a~ 68 (401)
T d1fc4a_ 10 QQLTNDLETARAEGLFKEE-----RIITSAQQADITVAD-------------G--SHVINFCANNYLGLANHP-DLIAAA 68 (401)
T ss_dssp HHHHHHHHHHHHTTCCCCC-----CCBCSCSSSEEEBTT-------------S--CEEEECCCSCTTSCTTCH-HHHHHH
T ss_pred HHHHHHHHHHHHcCCCCcc-----eeccCCCCCeEEecC-------------C--CEEEEEEccccccccCCH-HHHHHH
Confidence 3466889999999999998 799999999999865 7 899999999999999885 899999
Q ss_pred HHHHHHhCCCCCCCCC----------------------------------------------------------------
Q psy2206 257 KESVKQSGCALCSPSA---------------------------------------------------------------- 272 (430)
Q Consensus 257 ~~ai~~yG~g~~~sr~---------------------------------------------------------------- 272 (430)
++++++||++++++|.
T Consensus 69 ~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~g~e~al~~~SG~~An~~~i~~l~~~~d~i~~d~~~h~s~~~G~~~ 148 (401)
T d1fc4a_ 69 KAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRL 148 (401)
T ss_dssp HHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHHCCTTCEEEEETTCCHHHHHHHHT
T ss_pred HHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhhcCCceEEecchhhhhHHHHHHhcCCCcEEEeCCcchHHHHccccc
Confidence 9999999999999986
Q ss_pred ------------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEecccccccc
Q psy2206 273 ------------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGAL 340 (430)
Q Consensus 273 ------------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~l 340 (430)
++++|+++++.... +..+++|++|+||||+|+++||++|++||++||++||+||||++|++
T Consensus 149 ~~a~~~~~~~~d~~~le~~~~~~~~~-------~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~ 221 (401)
T d1fc4a_ 149 CKAKRYRYANNDMQELEARLKEAREA-------GARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFV 221 (401)
T ss_dssp SCSEEEEECTTCHHHHHHHHHHHHHT-------TCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTS
T ss_pred cCceEEEEcCCChHHHHHHHHHhhhc-------ccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhccccc
Confidence 26788887664311 23568999999999999999999999999999999999999999999
Q ss_pred CCCCCccceecCCCCCCccEEEeCccchhc-cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCC
Q psy2206 341 GPTGRGVTEYFGIDPREVDILMGTYTKSFG-SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLEN 419 (430)
Q Consensus 341 G~~GrG~~e~~g~~~~~~dIv~~TlSKa~G-~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~ 419 (430)
|++|+|+.+++++. .++||+++||+|++| .+||+++++++++++++..+++++|+++++|+.+++++++++.+...
T Consensus 222 g~~G~G~~~~~~~~-~~~dii~~tl~Ka~gg~~Gg~v~g~~~~~~~l~~~~~~~~~s~~l~p~~~~aa~~~l~~~~~~-- 298 (401)
T d1fc4a_ 222 GENGRGSHEYCDVM-GRVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAG-- 298 (401)
T ss_dssp STTSCCHHHHTTCT-TCCSEEEEESSSTTCSSSCEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTC--
T ss_pred cCCCCccchhccCC-CCCeEEEeecccccccCCcccccCCHHHHHHHHcCChhhhhcCCCCHHHHHHHHhhhcccccC--
Confidence 99999999999986 478999999999995 56999999999999999999999999999999999999999988665
Q ss_pred chHHHhhhh
Q psy2206 420 GDEGNVRHS 428 (430)
Q Consensus 420 ~~~~~~r~~ 428 (430)
+++++++.
T Consensus 299 -~~~~~~l~ 306 (401)
T d1fc4a_ 299 -SELRDRLW 306 (401)
T ss_dssp -HHHHHHHH
T ss_pred -HHHHHHHH
Confidence 34445443
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-38 Score=320.70 Aligned_cols=205 Identities=28% Similarity=0.402 Sum_probs=184.6
Q ss_pred hhHHHHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecCCCccCCCCCcHHHHHHHHH
Q psy2206 179 LYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKE 258 (430)
Q Consensus 179 l~~~~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S~nYLGl~~~~~~v~~a~~~ 258 (430)
+.+.++..+..+.|++. +++.+.+|++|++++ +++|||+|||||||++|| .+++++.+
T Consensus 6 ~~~~l~~~~~~~~~~~~-----~~~~~~~g~~i~~~g----------------~~~l~f~s~dYLGl~~~p-~v~~a~~~ 63 (383)
T d1bs0a_ 6 INAALDARRAADALRRR-----YPVAQGAGRWLVADD----------------RQYLNFSSNDYLGLSHHP-QIIRAWQQ 63 (383)
T ss_dssp HHHHHHHCCGGGCCCCC-----CCCSBCSSSEEEETT----------------EEEEECSCCCTTSGGGCH-HHHHHHHH
T ss_pred HHHHHHHHHHhCCCccc-----cccCCCCCCeEEECC----------------eEEEEEEcccccccCCCH-HHHHHHHH
Confidence 44567777788888888 689999999999754 899999999999999986 89999999
Q ss_pred HHHHhCCCCCCCCC------------------------------------------------------------------
Q psy2206 259 SVKQSGCALCSPSA------------------------------------------------------------------ 272 (430)
Q Consensus 259 ai~~yG~g~~~sr~------------------------------------------------------------------ 272 (430)
++++||+++++||.
T Consensus 64 a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g~e~al~~~SG~~an~~~i~al~~~~d~v~~d~~~h~si~~g~~~~~ 143 (383)
T d1bs0a_ 64 GAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSP 143 (383)
T ss_dssp HHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTSS
T ss_pred HHHHhCCCCCccccccCcchHHHHHHHHHHHhcCCCceEEecccchhhHHHHHhhcCCCceEEeeccccHHHhhccccCC
Confidence 99999999999998
Q ss_pred ----------HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCC
Q psy2206 273 ----------PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGP 342 (430)
Q Consensus 273 ----------~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~ 342 (430)
+++||+.|++. +.++++||+|++|||+|+++||++|+++|++||++|+|||||++|++|+
T Consensus 144 ~~~~~~~hnd~~~le~~l~~~----------~~~~~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~ 213 (383)
T d1bs0a_ 144 SQLRRFAHNDVTHLARLLASP----------CPGQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGE 213 (383)
T ss_dssp SEEEEECTTCHHHHHHHHHSC----------CSSCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSG
T ss_pred CcceEecchHHHHHHHHhccc----------CCCceEEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCC
Confidence 26777777652 2356799999999999999999999999999999999999999999999
Q ss_pred CCCccceecCCCCCCccEEEeCccchhccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccC
Q psy2206 343 TGRGVTEYFGIDPREVDILMGTYTKSFGSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLE 418 (430)
Q Consensus 343 ~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~ 418 (430)
+|+|.++++++. .++++.||+|++|+.||+++++.+++++++..+.+++|+++++|+.++++++++++++..+
T Consensus 214 ~g~G~~~~~~~~---~~~~~~t~~ka~g~~Gg~v~~~~~~~~~l~~~~~~~~~s~~~~p~~~aa~~~a~~~~~~~~ 286 (383)
T d1bs0a_ 214 QGRGSCWLQKVK---PELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQALRASLAVIRSDE 286 (383)
T ss_dssp GGCCHHHHTTCC---CSEEEEESSSTTSSCCEEEEECHHHHHHHHHHCHHHHSSBCCCHHHHHHHHHHHHHHHSHH
T ss_pred cccchHHHcCCc---cccccccccccccccccccccchhHHHHHHhhchhhhhcccccchHHHHHHHHHHHHHhhh
Confidence 999999999875 3788899999999999999999999999999999999999999999999999999987653
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.82 E-value=3.2e-20 Score=189.13 Aligned_cols=126 Identities=19% Similarity=0.202 Sum_probs=100.4
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-ceecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.+.+.||+|+++++.|.+.| |++|+++|++||++||+||++ +|+ + +|.+. .+++++.| ||+ +++|++
T Consensus 198 ~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~-tG~-r-~g~~~~~~~~gi~P---Di~--~~gK~l 269 (427)
T d2gsaa_ 198 GEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVM-TGF-R-IAYGGVQEKFGVTP---DLT--TLGKII 269 (427)
T ss_dssp TTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTT-TBT-T-TBTTCHHHHTTCCC---SEE--EECGGG
T ss_pred CCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeecccc-ccc-e-ecccchHHhcCCCH---HHH--hhhhcc
Confidence 46789999999999999998 999999999999999999999 564 3 45544 58899876 787 999998
Q ss_pred c--cccceeecCHHHHHHHHhcCCcc-cccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 370 G--SMGGYVAGSKSTIDYIRANSHVR-SYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 370 G--~~GG~v~gs~~li~~l~~~~~~~-~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
| .+.|++++++++++.+......+ ..|.+.+|+.+++++++|+++++++-.+..+++.+
T Consensus 270 ggG~p~~a~~~~~~i~~~~~~~~~~~~~~T~~gnpla~AAala~Le~i~~~~l~~~~~~~g~ 331 (427)
T d2gsaa_ 270 GGGLPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITK 331 (427)
T ss_dssp GTTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTSTTHHHHHHHHHH
T ss_pred CCCcceeeeeehHHHHHHhcccCCCcCCCCCCCCchhhHHHHHhhHHhhhhhHHhhhhHHHH
Confidence 5 35577889999998876533222 23557899999999999999988866555554443
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.82 E-value=2.2e-20 Score=188.94 Aligned_cols=122 Identities=20% Similarity=0.291 Sum_probs=101.4
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.++||+|+|+++.|.+.| |++|+++|++||++||+||++ +| +|++|..++ +++|+.| ||+ |++|++|
T Consensus 186 ~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~-tG-fgRtG~~~~~e~~gv~P---Div--t~gK~l~ 258 (404)
T d1z7da1 186 NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQ-TG-LGRTGKLLCVHHYNVKP---DVI--LLGKALS 258 (404)
T ss_dssp TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTT-TT-TTTTSSSSGGGGGTCCC---SEE--EECGGGG
T ss_pred CEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCc-cC-CCcccccccccccCCCC---CEE--EEccccc
Confidence 5789999999999999887 999999999999999999999 47 678887554 8899976 788 9999996
Q ss_pred ---cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 371 ---SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 371 ---~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
.+.|++++++++++.++...++ .|.+.+|+.|++++++|+++++++..+...+.
T Consensus 259 gG~~p~~~v~~~~~i~~~~~~~~~~--~T~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~ 315 (404)
T d1z7da1 259 GGHYPISAVLANDDIMLVIKPGEHG--STYGGNPLAASICVEALNVLINEKLCENAEKL 315 (404)
T ss_dssp TTSSCCEEEEECHHHHTTCCTTCCC--CTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred CCCCCcccccchHHHHccCCCCCcC--cCCCCCcchhhhhhhhhhhhhcchhhhhhccc
Confidence 4668899999999887664433 34567999999999999999888765555443
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.79 E-value=1.7e-19 Score=181.71 Aligned_cols=215 Identities=19% Similarity=0.179 Sum_probs=149.3
Q ss_pred HHHHHHhhcccccccccCcccccCCCCEEEEecCCCCCCCccccccCCccceeeecC---CCccCCCCCcHHHHHHHHHH
Q psy2206 183 FVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLAS---YNYLGFGENTGLCTERSKES 259 (430)
Q Consensus 183 ~~~~~~~~~~~~~~d~~~r~i~~~~g~~i~~~~~~~~d~~~~~~~~G~~~~~lnf~S---~nYLGl~~~~~~v~~a~~~a 259 (430)
.++.+..+.|.+. +..|.++.|++|++.| | +++|||.| ++-||.+ +|++++|+.++
T Consensus 7 ~~~~~~~~~y~~~----p~~i~ra~G~~l~d~d-------------G--~~ylD~~~g~~~~~lGh~--hp~v~~a~~~~ 65 (387)
T d1vefa1 7 AEKTLDSGVYNKH----DLLIVRGQGARVWDAE-------------G--NEYIDCVGGYGVANLGHG--NPEVVEAVKRQ 65 (387)
T ss_dssp HHHHHBCSCSCCC----SSCEEEEEBTEEEETT-------------S--CEEEESSHHHHTCTTCBT--CHHHHHHHHHH
T ss_pred hhhhccCCCCCCC----CceEEEeEcCEEEECC-------------C--CEEEEcchhHHhhhhcCC--cHHHHHHHHHH
Confidence 3455567777765 5789999999999775 7 89999954 2336664 46899999999
Q ss_pred HHHhCCCCCCCCC---------------------------HHHHHHHHHHHhhc------------------------C-
Q psy2206 260 VKQSGCALCSPSA---------------------------PSSLEAGLQKALLE------------------------G- 287 (430)
Q Consensus 260 i~~yG~g~~~sr~---------------------------~~~Le~~L~~~~~~------------------------~- 287 (430)
+++.......-.. .++.|.+++-+... +
T Consensus 66 ~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~~ 145 (387)
T d1vefa1 66 AETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWE 145 (387)
T ss_dssp HHHCCCCCTTSCCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCC
T ss_pred HHhhcccccccCCchHHHHHHHhhhhccccceeeccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccCC
Confidence 9884321111111 13333333211000 0
Q ss_pred -------CCCCC----------------CCCceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEecccccccc
Q psy2206 288 -------QPHSG----------------KPWRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGAL 340 (430)
Q Consensus 288 -------~p~~~----------------~~~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~l 340 (430)
.|... -..+.+.||+|+|+++.|.+.+ |++|+++|++||++||+||+++ | +
T Consensus 146 ~~~~~~~~p~~~~~~~~p~~d~~~l~~~~~~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t-G-f 223 (387)
T d1vefa1 146 PKYREPFLPLVEPVEFIPYNDVEALKRAVDEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQT-G-M 223 (387)
T ss_dssp HHHHGGGCSCSSCEEEECTTCHHHHHHHCCTTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTT-T-T
T ss_pred ccccCCCCCCCCCceEeCCCCHHHHHHhcCCCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEeccccc-c-c
Confidence 00000 0135788999999999998877 9999999999999999999984 5 6
Q ss_pred CCCCCccc-eecCCCCCCccEEEeCccchhc--cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 341 GPTGRGVT-EYFGIDPREVDILMGTYTKSFG--SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 341 G~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G--~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
|++|.+.+ +++++.| ||+ +++|++| .+-+.+++.+++++.+....++ .|.+.+|+.|++++++|++++++
T Consensus 224 gR~G~~~~~~~~~v~P---Di~--~~gK~l~gG~~~~~~~~~~~~~~~~~~~~~g--~T~~gnPla~aaa~a~L~~l~~~ 296 (387)
T d1vefa1 224 GRTGKRFAFEHFGIVP---DIL--TLAKALGGGVPLGVAVMREEVARSMPKGGHG--TTFGGNPLAMAAGVAAIRYLERT 296 (387)
T ss_dssp TTTSSSSTHHHHTCCC---SEE--EECGGGGTTSSCEEEEEEHHHHHTSCTTSSC--CSSTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCCCcccccCCcCC---cee--eecccCCCCccccccccceeeeeccccCCcc--ccCCCCcchhhhcccchhhcccc
Confidence 88888665 7899976 777 9999996 2335566778877766544333 45567999999999999999888
Q ss_pred CCchHHHhhh
Q psy2206 418 ENGDEGNVRH 427 (430)
Q Consensus 418 ~~~~~~~~r~ 427 (430)
+-.+..+++.
T Consensus 297 ~~~~~v~~~g 306 (387)
T d1vefa1 297 RLWERAAELG 306 (387)
T ss_dssp TTHHHHHHHH
T ss_pred cccchHhhhh
Confidence 7665555443
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=1.7e-19 Score=182.60 Aligned_cols=121 Identities=19% Similarity=0.241 Sum_probs=99.4
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.+.||+|+|.++.|.+.| |++|+++|++||++||+||++ +| ||++|.+++ +++|+.| ||+ ||+|++|
T Consensus 188 ~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~-tG-fgR~G~~~a~~~~gv~P---Di~--~~gK~l~ 260 (404)
T d2byla1 188 NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQ-TG-LARTGRWLAVDYENVRP---DIV--LLGKALS 260 (404)
T ss_dssp TEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTT-TT-TTTTSSSSGGGGGTCCC---SEE--EECGGGG
T ss_pred CeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccc-cc-cccccccchhhhcCCCC---CEE--EECchhh
Confidence 5678999999999998887 999999999999999999998 56 788888665 7899976 787 9999996
Q ss_pred ---cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHh
Q psy2206 371 ---SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNV 425 (430)
Q Consensus 371 ---~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~ 425 (430)
.+.|.+++++++.+.+....+ ..|.+.+|+.|++++++|++|++++-.+..++
T Consensus 261 gG~~p~~av~~~~~i~~~~~~~~~--~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~ 316 (404)
T d2byla1 261 GGLYPVSAVLCDDDIMLTIKPGEH--FSTYGGNPLGCRVAIAALEVLEEENLAENADK 316 (404)
T ss_dssp TTSSCCEEEEECHHHHTTSCTTSS--CCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred CCCccceeeeechhhhhccCCCCC--CcCCCcCHHHHHHHHHHHHHHHhcCchhhhhH
Confidence 356788899999887755332 23556799999999999999988765444444
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=7.4e-19 Score=178.65 Aligned_cols=123 Identities=21% Similarity=0.232 Sum_probs=99.8
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+...||+|+|.++.|.+.| |+.|+++|++||++||+||+++ | +|++|.+.+ +++|+.| ||+ |++|++|
T Consensus 198 ~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~t-G-~gR~g~~~a~~~~gv~P---Di~--~~gK~l~ 270 (425)
T d1sffa_ 198 DIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQS-G-AGRTGTLFAMEQMGVAP---DLT--TFAKSIA 270 (425)
T ss_dssp GEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSGGGGTTSCC---SEE--EECGGGG
T ss_pred ceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccc-c-CCCcchhhHHHhcCCCc---cce--ecccccC
Confidence 4678999999999998765 9999999999999999999985 6 577887654 8899876 777 9999996
Q ss_pred --cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhh
Q psy2206 371 --SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRH 427 (430)
Q Consensus 371 --~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~ 427 (430)
.+-|++++++++++.+....++ .|.+.+|+.|++++++|+++++++-.+...+..
T Consensus 271 gG~P~~av~~~~~i~~~~~~~~~~--~T~~gnpl~~aaa~a~L~~i~~~~~~~~~~~~g 327 (425)
T d1sffa_ 271 GGFPLAGVTGRAEVMDAVAPGGLG--GTYAGNPIACVAALEVLKVFEQENLLQKANDLG 327 (425)
T ss_dssp TSSCCEEEEEEHHHHTTSCTTSBC--CSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred CCcceEEEEEcHHHHHhhCCCCCC--CCCCcCHHHHHHHHHHHHHHHHhhhhhhhhhhh
Confidence 3447788999999877654433 456689999999999999998887655554443
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.76 E-value=5.4e-18 Score=172.37 Aligned_cols=126 Identities=22% Similarity=0.208 Sum_probs=101.8
Q ss_pred ceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+.+.||+|+|.++.|.+.| |++|+++|++||++||+||+++ | +|++|..++ +++|+.| ||+ +++|++|
T Consensus 201 ~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~t-G-~gRtG~~~~~~~~gv~P---Di~--~~gK~l~ 273 (431)
T d1zoda1 201 NLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQT-G-VGRTGTMFACQRDGVTP---DIL--TLSKTLG 273 (431)
T ss_dssp CEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSTHHHHTCCC---SEE--EECHHHH
T ss_pred cccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccc-c-ccccccccccccCCCCc---chh--ccccccc
Confidence 5789999999999898876 9999999999999999999985 6 678887654 7899976 777 9999995
Q ss_pred --cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHhhhh
Q psy2206 371 --SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNVRHS 428 (430)
Q Consensus 371 --~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r~~ 428 (430)
.+-+.+++.+++++.+......+..|.+.+|+.|++++++|+++++++-.++..+..+
T Consensus 274 gG~p~~av~~~~~~~~~~~~~~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~~~~~~~~g~ 333 (431)
T d1zoda1 274 AGLPLAAIVTSAAIEERAHELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGD 333 (431)
T ss_dssp TTSSCEEEEECHHHHHHHHHTTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred cccccceeeeeecchhhhhcccccccCCCCCCcchHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 3445667888888877665444456777899999999999999988876655554433
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.75 E-value=1.4e-17 Score=169.71 Aligned_cols=125 Identities=18% Similarity=0.180 Sum_probs=97.5
Q ss_pred CceEEEEEcCccCCCC-ccc-C---HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccch
Q psy2206 295 WRKILIVVEGIFSMDG-SIV-R---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKS 368 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G-~i~-~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa 368 (430)
...+.||+|++....| .+. | |++|+++|++||++||+||+++ | +|++|.+++ +++++.| ||+ +++|+
T Consensus 203 ~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~t-G-fGRtG~~~~~~~~~v~P---Di~--~~gK~ 275 (429)
T d1s0aa_ 203 HEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIAT-G-FGRTGKLFACEHAEIAP---DIL--CLGKA 275 (429)
T ss_dssp TTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTT-T-TTTTSSSSGGGGGTCCC---SEE--EECGG
T ss_pred CccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccc-c-ccccccccccccceecc---ccc--ccccc
Confidence 3578999999974444 444 3 9999999999999999999984 6 688887664 7899876 787 99999
Q ss_pred hc---cccceeecCHHHHHHHHhcC-Cc--ccccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 369 FG---SMGGYVAGSKSTIDYIRANS-HV--RSYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 369 ~G---~~GG~v~gs~~li~~l~~~~-~~--~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
++ .+.|++++++++.+.+.... .. +..|.+.+|+.+++++++|+++++++-.+..++.
T Consensus 276 l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~i~~~~~~~~~~~~ 339 (429)
T d1s0aa_ 276 LTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADI 339 (429)
T ss_dssp GGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cccccccccchhhHHHHHhccCCCCCcceeecCCCCCCcccchhhhccccccccccccchhhHH
Confidence 95 35578899999999887532 11 2346678999999999999999888654444443
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.63 E-value=6.3e-16 Score=158.61 Aligned_cols=121 Identities=20% Similarity=0.167 Sum_probs=91.5
Q ss_pred CceEEEEEcCccCCCCcccC----HHHHHHHHHhcCcEEEEeccccccccCCCCCccc-eecCCCCCCccEEEeCccchh
Q psy2206 295 WRKILIVVEGIFSMDGSIVR----LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT-EYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~----L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~-e~~g~~~~~~dIv~~TlSKa~ 369 (430)
.+..+||+|++.+..|.+.| |++|+++|++||++||+||+++ | +|++|..++ +++++.+ ..||+ +++|++
T Consensus 247 ~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~t-G-~gRtG~~~~~e~~gi~~-~PDiv--~~gK~l 321 (461)
T d1ohwa_ 247 KTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQT-G-GGSTGKFWAHEHWGLDD-PADVM--TFSKKM 321 (461)
T ss_dssp CCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTT-C-SSTTSSSSGGGGGCCSS-CCSEE--EECGGG
T ss_pred CccceeeeccccccccccCchhhHHHHHHHHHHhhCcceecccccc-c-ccccccccccccccccc-Cchhh--hhhhcc
Confidence 35778999999999998765 9999999999999999999984 5 689998665 7888862 45888 999998
Q ss_pred ccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHccCCchHHHh
Q psy2206 370 GSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMGLENGDEGNV 425 (430)
Q Consensus 370 G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~ 425 (430)
+ ||++.....+... ....+..|...+|+.+++++++|+++++++-.+..++
T Consensus 322 ~--~g~~~~~~~~~~~---~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~ 372 (461)
T d1ohwa_ 322 M--TGGFFHKEEFRPN---APYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAH 372 (461)
T ss_dssp S--SEEEEECGGGSCS---STTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred c--ccccccccccccc---cccccccccccccccchhhcccchhhhhhhHHHHHHH
Confidence 6 5555554433221 1122334567799999999999999988764444433
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.41 E-value=5.2e-13 Score=131.60 Aligned_cols=93 Identities=17% Similarity=0.261 Sum_probs=72.8
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCC-ccceecCCCCCCccEEEeCccchhcc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR-GVTEYFGIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr-G~~e~~g~~~~~~dIv~~TlSKa~G~ 371 (430)
++++|++.++.+++|.+.+ +.+|+++|++|+++||+||+|+..+++.... .+....+. .+..|+++||||+||+
T Consensus 159 ~~~~i~~~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~~~ 236 (388)
T d1gdea_ 159 KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGM--FERTITVNGFSKTFAM 236 (388)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTC--GGGEEEEEESTTTTTC
T ss_pred CCeEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCC--CCeEEEEeCChhhccC
Confidence 4667778888999999986 8889999999999999999998766554322 22222222 2457999999999999
Q ss_pred cc---ceeecCHHHHHHHHhcC
Q psy2206 372 MG---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 372 ~G---G~v~gs~~li~~l~~~~ 390 (430)
+| ||+++++++++.+....
T Consensus 237 ~GlR~G~ii~~~~~~~~~~~~~ 258 (388)
T d1gdea_ 237 TGWRLGFVAAPSWIIERMVKFQ 258 (388)
T ss_dssp GGGCCEEEECCHHHHHHHHHHH
T ss_pred ccccEEEEEeeccchhhhhhcc
Confidence 99 99999999998877643
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.37 E-value=7.2e-14 Score=138.28 Aligned_cols=111 Identities=16% Similarity=0.294 Sum_probs=87.6
Q ss_pred ceEEEEEcCccCC-CCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc-cc
Q psy2206 296 RKILIVVEGIFSM-DGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS-MG 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm-~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~-~G 373 (430)
++++|+++++.+| .+++.+|++|+++|++||+++++||+|+.++++..+.+....++ +||++.|+||+++. .+
T Consensus 133 ~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~-----~di~~~S~sK~~~g~~~ 207 (366)
T d2aeua1 133 DTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLG-----ADLVVTSTDKLMEGPRG 207 (366)
T ss_dssp TEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHT-----CSEEEEETTSSSSSCSC
T ss_pred CceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcC-----ceEEEecccccccccce
Confidence 5778889888775 55788999999999999999999999999888655554433333 58999999999964 45
Q ss_pred ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 374 GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 374 G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
||+++++++++.++..... ++.+++|+.+++++++|+.
T Consensus 208 G~i~~~~~~i~~~~~~~~~--~g~~~~~~~~~a~~~aL~t 245 (366)
T d2aeua1 208 GLLAGKKELVDKIYIEGTK--FGLEAQPPLLAGIYRALKN 245 (366)
T ss_dssp EEEEEEHHHHHHHHHHHHT--TTCBCCHHHHHHHHHHHHH
T ss_pred eEEEecHHHHHHHHHHHhc--ccccCCHHHHHHHHHHHHh
Confidence 9999999999999876533 3445667777777777764
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.33 E-value=2.4e-12 Score=127.07 Aligned_cols=90 Identities=22% Similarity=0.241 Sum_probs=70.9
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
++++|++.++.+++|.+.+ +.+|+++|++||++||.||+|+...+....... .. .. .+..|+++||||+|+++
T Consensus 164 ~~~~i~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~--~~-~~-~~~~i~~~s~SK~~~~~ 239 (382)
T d1b5pa_ 164 RTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSP--GR-VA-PEHTLTVNGAAKAFAMT 239 (382)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCG--GG-TC-TTTEEEEEESTTTTTCG
T ss_pred CCeEEEECCCCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCH--HH-cC-CCCEEEEecchhhccCc
Confidence 4567777788999999987 888999999999999999999876664322111 11 22 24579999999999999
Q ss_pred c---ceeecCHHHHHHHHhc
Q psy2206 373 G---GYVAGSKSTIDYIRAN 389 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~ 389 (430)
| ||+++++++++.+...
T Consensus 240 GlR~G~~~~~~~~i~~~~~~ 259 (382)
T d1b5pa_ 240 GWRIGYACGPKEVIKAMASV 259 (382)
T ss_dssp GGCCEEEECCHHHHHHHHHH
T ss_pred HhheEEEEECHHHHHHHHHH
Confidence 8 9999999999887653
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.31 E-value=2.8e-12 Score=127.30 Aligned_cols=93 Identities=13% Similarity=0.203 Sum_probs=70.0
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCC-ccceecCCCCCCccEEEeCccchhcc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR-GVTEYFGIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr-G~~e~~g~~~~~~dIv~~TlSKa~G~ 371 (430)
++++|++..+.+++|.+.+ +++|+++|++||++||+||+|+..+++.... .+..... ...+..|+++||||+|++
T Consensus 163 ~~~~~~~~~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~-~~~~~~i~~~S~SK~~~~ 241 (388)
T d1j32a_ 163 KTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASP-EAYERSVVCSGFAKTYAM 241 (388)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCH-HHHHTEEEEEESTTTTTC
T ss_pred CCeEEEECCCCCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCc-ccccceeEecCChhhhhc
Confidence 4567777788999999887 8888888999999999999998766643221 1111100 001347899999999999
Q ss_pred cc---ceeecCHHHHHHHHhc
Q psy2206 372 MG---GYVAGSKSTIDYIRAN 389 (430)
Q Consensus 372 ~G---G~v~gs~~li~~l~~~ 389 (430)
+| ||+++++++++.+...
T Consensus 242 ~GlRvG~~~~~~~~~~~~~~~ 262 (388)
T d1j32a_ 242 TGWRVGFLAGPVPLVKAATKI 262 (388)
T ss_dssp TTTCCEEEECCHHHHHHHHHH
T ss_pred chhHeEEEEECHHHHHHHHHh
Confidence 99 9999999999877653
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.26 E-value=3.5e-12 Score=123.41 Aligned_cols=101 Identities=18% Similarity=0.262 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++++.. +..+.++|+++.+++++|.+.|+++|+++|++||+++++||||+.|.++... ..+
T Consensus 125 ~~~l~~~i~~~~--------k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~~~~~----~~~- 191 (364)
T d2e7ja1 125 PENFAQTIEETK--------KRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSL----KEI- 191 (364)
T ss_dssp HHHHHHHHHHHT--------TTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCH----HHH-
T ss_pred HHHHHhhhhhhc--------ccCCceEEEeecCCCCCceeecchhheeccccccchhhccccchhhhhhhcc----ccc-
Confidence 789999998742 1235778999999999999999999999999999999999999877654211 112
Q ss_pred CCCCCccEEEeCccchhcccc--ceeecCHHHHHHHHhcC
Q psy2206 353 IDPREVDILMGTYTKSFGSMG--GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G--G~v~gs~~li~~l~~~~ 390 (430)
.+|++++|++|.+|++| |++++++++++.+....
T Consensus 192 ----g~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~~ 227 (364)
T d2e7ja1 192 ----GADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRS 227 (364)
T ss_dssp ----TCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBC
T ss_pred ----ccceeeeccccccCCCCCEEEEEECHHHHHHHHhhc
Confidence 35899999999999776 89999998887765443
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=9.3e-13 Score=131.44 Aligned_cols=60 Identities=22% Similarity=0.278 Sum_probs=56.5
Q ss_pred CcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCcccccc
Q psy2206 64 RPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASM 140 (430)
Q Consensus 64 rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~~ 140 (430)
+++.+.+|++|++.+| ++|||+|||||||+ .||.+++++++++++||+|+||||...|+.
T Consensus 23 ~~~~~~~g~~i~~~g~----------------~~l~f~s~dYLGl~-~~p~v~~a~~~a~~~~G~~~~~sr~~~g~~ 82 (383)
T d1bs0a_ 23 YPVAQGAGRWLVADDR----------------QYLNFSSNDYLGLS-HHPQIIRAWQQGAEQFGIGSGGSGHVSGYS 82 (383)
T ss_dssp CCCSBCSSSEEEETTE----------------EEEECSCCCTTSGG-GCHHHHHHHHHHHHHHCSCCCSBTTTTCCC
T ss_pred cccCCCCCCeEEECCe----------------EEEEEEcccccccC-CCHHHHHHHHHHHHHhCCCCCccccccCcc
Confidence 6789999999998765 89999999999999 599999999999999999999999999986
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=8.6e-13 Score=132.53 Aligned_cols=86 Identities=22% Similarity=0.229 Sum_probs=73.2
Q ss_pred cccCCccchHHHHHHHHHHHHHHhhhcccCCcccCCCCCEEEEeccccCCCCceeeecCCcceeEEeeeccccCCCCCCh
Q psy2206 34 MVKFGYPDLYEKFVLFYSRYVYRRIVDCFNRPVTSVPGAIITIKDRETPDYGWTFKYTGTESTCLNLASYNYLGFGENTG 113 (430)
Q Consensus 34 ~~~~~~~pl~~~~e~~~~r~l~~r~~d~~~rpi~~~~g~~i~v~~r~~~d~~~~~~~tg~~~~~lnl~SyNYLGfa~~~~ 113 (430)
|..+.|..|-+.+++....++|+.. |+|.+.+|++|++. +++++|||+|||||||+ +||
T Consensus 4 m~~~~~~~~~~~l~~~~~~g~~r~~-----~~i~~~~g~~v~~~---------------dG~~~l~f~s~dYLGl~-~hp 62 (401)
T d1fc4a_ 4 MRGEFYQQLTNDLETARAEGLFKEE-----RIITSAQQADITVA---------------DGSHVINFCANNYLGLA-NHP 62 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCC-----CCBCSCSSSEEEBT---------------TSCEEEECCCSCTTSCT-TCH
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCcc-----eeccCCCCCeEEec---------------CCCEEEEEEcccccccc-CCH
Confidence 3334455667778888877888776 99999999999863 23689999999999999 699
Q ss_pred hhHHHHHHHHhhhCCccccCCcccccc
Q psy2206 114 LCTERSKESVKQSGCALCSPSGEIASM 140 (430)
Q Consensus 114 ~~~~a~~~al~~yG~gs~~sr~~~g~~ 140 (430)
.+++++++++++||+|+|+||...|+.
T Consensus 63 ~v~~a~~~a~~~~g~~~~~sr~~~g~~ 89 (401)
T d1fc4a_ 63 DLIAAAKAGMDSHGFGMASVRFICGTQ 89 (401)
T ss_dssp HHHHHHHHHHHHHCSCCCSCHHHHCCB
T ss_pred HHHHHHHHHHHHhCCCcccceeeccCc
Confidence 999999999999999999999998885
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.19 E-value=3.3e-12 Score=128.37 Aligned_cols=50 Identities=14% Similarity=0.217 Sum_probs=46.9
Q ss_pred ecCCcceeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccccCCcccccc
Q psy2206 90 YTGTESTCLNLASYNYLGFGENTGLCTERSKESVKQSGCALCSPSGEIASM 140 (430)
Q Consensus 90 ~tg~~~~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~~sr~~~g~~ 140 (430)
.++..+++|||+|||||||+ +||.+++++++++++||+|+||||++.|+.
T Consensus 40 ~~~~~~~~~~FsSndYLGL~-~~p~v~~a~~~al~~yG~gs~~Sr~~~G~~ 89 (396)
T d2bwna1 40 PDGGKQDITVWCGNDYLGMG-QHPVVLAAMHEALEAVGAGSGGTRNISGTT 89 (396)
T ss_dssp TTSCEEEEEECSCSCTTSGG-GCHHHHHHHHHHHHHHCSCCCSBTTTBCCB
T ss_pred cCCCCeEEEEEEcccccCcC-CCHHHHHHHHHHHHHhCCCccccccccCCc
Confidence 35667899999999999999 699999999999999999999999999987
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.06 E-value=1.3e-10 Score=113.10 Aligned_cols=91 Identities=16% Similarity=0.117 Sum_probs=66.2
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
++++|++.++.+++|.+.+ +.+|+++|++|++++|+||+|...+. .+......... .+..|++.||||++|++
T Consensus 144 ~~~~v~l~nP~NPtG~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~--~~~~~~~~~~~--~~~~i~~~S~SK~~~l~ 219 (355)
T d1lc5a_ 144 DLDCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIP--HETGFIPALKD--NPHIWVLRSLTKFYAIP 219 (355)
T ss_dssp TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGST--TCCCSGGGCTT--CTTEEEEEESTTTTTCT
T ss_pred ccceeeeecccCcccccchhhhhhhhhhhccccccccccccceeeeee--ecccccccccc--cccceeecccccccccc
Confidence 3456667778999999987 77888889999999999999975332 22222222221 24579999999999999
Q ss_pred c---ceeecCHH-HHHHHHhcC
Q psy2206 373 G---GYVAGSKS-TIDYIRANS 390 (430)
Q Consensus 373 G---G~v~gs~~-li~~l~~~~ 390 (430)
| ||++++.+ +++.++...
T Consensus 220 GlR~G~~i~~~~~~~~~~~~~~ 241 (355)
T d1lc5a_ 220 GLRLGYLVNSDDAAMARMRRQQ 241 (355)
T ss_dssp TTCCEEEECCCHHHHHHHHHHS
T ss_pred cccccceeccchhhhHHHHhhc
Confidence 9 99998755 556666543
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.05 E-value=9.5e-11 Score=117.30 Aligned_cols=138 Identities=17% Similarity=0.228 Sum_probs=103.5
Q ss_pred HHHHHHHHHhCCCCCC--CCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEE
Q psy2206 254 ERSKESVKQSGCALCS--PSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYV 331 (430)
Q Consensus 254 ~a~~~ai~~yG~g~~~--sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~Liv 331 (430)
+-..+.+.++|+...- +..++++++++++ ++++|.+|++-|++..+.||++|+++|+++|+.++|
T Consensus 113 ~l~~~~~~~~Gi~~~~~d~~d~~~~~~ai~~-------------~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vv 179 (392)
T d1gc0a_ 113 AFLHHGIGEFGVKLRHVDMADLQALEAAMTP-------------ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVV 179 (392)
T ss_dssp HHHHHTGGGGTCEEEEECTTCHHHHHHHCCT-------------TEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEE
T ss_pred hhhhhhhccCCcccccCCccCHHHHHHhCCC-------------CCeEEEecccccceeeecchHHHHHHHHhcCCEEEE
Confidence 3344455566663321 2225666665543 578999999999999999999999999999999999
Q ss_pred eccccccccCCCCCccceecCCCCCCccEEEeCccchhc----cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHH
Q psy2206 332 DEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG----SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQI 407 (430)
Q Consensus 332 DEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G----~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaa 407 (430)
|.+.+.+++-+ +++ ..+||++.|++|.++ ..||.++++++.+..++.......++..++|..++.+
T Consensus 180 DnT~atP~~~~---------Pl~-~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p~da~ll 249 (392)
T d1gc0a_ 180 DNTYCTPYLQR---------PLE-LGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALL 249 (392)
T ss_dssp ECTTTHHHHCC---------GGG-GTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHH
T ss_pred ecCccCccccC---------hHH-hCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCChhhHHHH
Confidence 99998776421 122 246999999999996 4679999999998877643222235778999999999
Q ss_pred HHHHHHH
Q psy2206 408 LTSMRII 414 (430)
Q Consensus 408 laaL~~l 414 (430)
+..|+.+
T Consensus 250 ~rgl~TL 256 (392)
T d1gc0a_ 250 MRGIKTL 256 (392)
T ss_dssp HHHHTTH
T ss_pred HhccccH
Confidence 9888766
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.04 E-value=3.6e-10 Score=111.73 Aligned_cols=93 Identities=14% Similarity=0.107 Sum_probs=66.4
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
++++|++.++.|++|.+.+ +.+|+++|++|+++||+||+|+..++................+..|++.|+||+|+++
T Consensus 164 ~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~ 243 (394)
T d1c7na_ 164 NNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIA 243 (394)
T ss_dssp TEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCG
T ss_pred cceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeeccccccccccc
Confidence 4678888999999999987 7788999999999999999998766643221111111000123468899999999987
Q ss_pred c---cee-ecCHHHHHHHHh
Q psy2206 373 G---GYV-AGSKSTIDYIRA 388 (430)
Q Consensus 373 G---G~v-~gs~~li~~l~~ 388 (430)
| ||+ +.++.+++.+..
T Consensus 244 G~R~g~~~~~~~~i~~~~~~ 263 (394)
T d1c7na_ 244 GMGMSNIIIKNPDIRERFTK 263 (394)
T ss_dssp GGCCEEEECCCHHHHHHHHH
T ss_pred ccccccccccChhhhhhhhh
Confidence 6 554 555667676665
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.04 E-value=3.2e-10 Score=110.88 Aligned_cols=93 Identities=17% Similarity=0.232 Sum_probs=72.7
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
++.++++..+.+++|.+.+ +++|+++|++|+++||.||+|+...++..........+ ..+..|+++||||+||++
T Consensus 161 ~~~~~~l~nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~~l~ 238 (375)
T d1o4sa_ 161 KTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSE--GFDRIVYINGFSKSHSMT 238 (375)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCS--SSTTEEEEEESTTTTTCG
T ss_pred CccEEEEeCCCCCccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccC--CCCCEEEEeechhhccCC
Confidence 4667778888999999987 88889999999999999999987665433222222222 235679999999999998
Q ss_pred c---ceeecCHHHHHHHHhcC
Q psy2206 373 G---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~ 390 (430)
| ||+++++++++.+....
T Consensus 239 G~R~G~~~~~~~~~~~~~~~~ 259 (375)
T d1o4sa_ 239 GWRVGYLISSEKVATAVSKIQ 259 (375)
T ss_dssp GGCCEEEECCHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhhhh
Confidence 8 99999999998877643
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.02 E-value=2.9e-10 Score=113.86 Aligned_cols=138 Identities=18% Similarity=0.214 Sum_probs=102.5
Q ss_pred HHHHHHHHHhCCCCCC--CCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEE
Q psy2206 254 ERSKESVKQSGCALCS--PSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYV 331 (430)
Q Consensus 254 ~a~~~ai~~yG~g~~~--sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~Liv 331 (430)
+-..+.+.+||+...- ...++.+++.+++ ++++|.+|++-|+...+.||++|+++|+++|++++|
T Consensus 117 ~~~~~~l~~~Gi~~~~vd~~d~~~~~~~i~~-------------~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vv 183 (397)
T d1y4ia1 117 AFLSHSMPKFGINVRFVDAGKPEEIRAAMRP-------------ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVV 183 (397)
T ss_dssp HHHHTHHHHTTCEEEEECTTSHHHHHHHCCT-------------TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred hhhhcccCCCceEeeccCCCCHHHHHHhcCC-------------CCcEEEecCCcccceeecccHHHHHHhhcCCceEEe
Confidence 3344455666764321 2225666665532 588999999999999999999999999999999999
Q ss_pred eccccccccCCCCCccceecCCCCCCccEEEeCccchhc----cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHH
Q psy2206 332 DEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG----SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQI 407 (430)
Q Consensus 332 DEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G----~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaa 407 (430)
|.+.+..++-+ ++. ..+||++.|++|.++ ..||+++++++.+..++........+..++|..++.+
T Consensus 184 DnT~atP~~~~---------Pl~-~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~ 253 (397)
T d1y4ia1 184 DNTFMSPYCQQ---------PLQ-LGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLT 253 (397)
T ss_dssp ECTTTCTTTCC---------GGG-GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHH
T ss_pred cCcccCcccCc---------chh-cCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHH
Confidence 99987665321 122 246999999999996 4679999999988776543222235778999999999
Q ss_pred HHHHHHH
Q psy2206 408 LTSMRII 414 (430)
Q Consensus 408 laaL~~l 414 (430)
+..|+.+
T Consensus 254 ~rgl~TL 260 (397)
T d1y4ia1 254 LRGVKTL 260 (397)
T ss_dssp HHHHTTH
T ss_pred HcCcCcH
Confidence 8888765
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=98.96 E-value=6.5e-10 Score=108.35 Aligned_cols=91 Identities=21% Similarity=0.321 Sum_probs=69.6
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
.+++|++..+.+++|.+.+ +++|+++|++||+++++||+|+.............. . .+..+++.|+||.++++
T Consensus 152 ~~~~i~~~~p~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~sk~~~~~ 227 (368)
T d1v2da_ 152 RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF--A--PERTFTVGSAGKRLEAT 227 (368)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH--C--TTTEEEEEEHHHHTTCG
T ss_pred CceEEEEcCCCCcccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccc--c--ccccceeeccccccccc
Confidence 3556777788999999987 888999999999999999999876554332221111 1 23467789999999988
Q ss_pred c---ceeecCHHHHHHHHhcC
Q psy2206 373 G---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~ 390 (430)
| ||+++++++++.+....
T Consensus 228 G~R~g~~~~~~~~~~~~~~~~ 248 (368)
T d1v2da_ 228 GYRVGWIVGPKEFMPRLAGMR 248 (368)
T ss_dssp GGCCEEEECCTTTHHHHHHHH
T ss_pred ccccccccccccccchhhhhh
Confidence 8 99999999998777643
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.89 E-value=3.8e-09 Score=104.43 Aligned_cols=79 Identities=20% Similarity=0.232 Sum_probs=60.3
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
++++|++..+.+++|.+.+ +.+|+++|++|++++|.||+|...+++......... ...+..|++.||||+|+++
T Consensus 166 ~~~~v~l~~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~---~~~~~vi~~~S~SK~~~~~ 242 (395)
T d1xi9a_ 166 RTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSL---TKDVPVIVMNGLSKVYFAT 242 (395)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHH---CSSSCEEEEEESTTTTCCG
T ss_pred cccEEEecCCCCCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhc---CCCCCEEEEeCcchhcccc
Confidence 4567777788999999987 889999999999999999999877665432222111 1233469999999999988
Q ss_pred c---ceee
Q psy2206 373 G---GYVA 377 (430)
Q Consensus 373 G---G~v~ 377 (430)
| ||++
T Consensus 243 GlRvG~~~ 250 (395)
T d1xi9a_ 243 GWRLGYMY 250 (395)
T ss_dssp GGCCEEEE
T ss_pred hhhcEeeE
Confidence 8 8754
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=98.89 E-value=1.9e-09 Score=107.83 Aligned_cols=109 Identities=17% Similarity=0.127 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCC-Cccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTG-RGVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~G-rG~~ 348 (430)
++++++.+.+.... ..++++|++..+.+++|.+.+ |.+|+++|++||++||+||+|+..+++... ..+.
T Consensus 173 ~~~~~~~~~~~~~~-------~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~ 245 (431)
T d1m7ya_ 173 ETALEEAYQEAEKR-------NLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVM 245 (431)
T ss_dssp HHHHHHHHHHHHHT-------TCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHH
T ss_pred HHHhhhhhhhhhhc-------cCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCCCCCHH
Confidence 45666666553211 124677888889999999887 888999999999999999999877665321 1111
Q ss_pred eec---CC----CCCCccEEEeCccchhcccc---ceeecCHHHHHHHHh
Q psy2206 349 EYF---GI----DPREVDILMGTYTKSFGSMG---GYVAGSKSTIDYIRA 388 (430)
Q Consensus 349 e~~---g~----~~~~~dIv~~TlSKa~G~~G---G~v~gs~~li~~l~~ 388 (430)
+.. .. ...+..|+++||||.||++| ||++++++++.....
T Consensus 246 ~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~~~~~ 295 (431)
T d1m7ya_ 246 EVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVVAAAT 295 (431)
T ss_dssp HHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGGCEEEEEESCHHHHHHHH
T ss_pred HHhhhcccccccccCceEEEEecCcccccCCCCccceeccchhhhHHHHH
Confidence 110 00 01134689999999999887 999998877654443
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=98.89 E-value=3.7e-09 Score=105.08 Aligned_cols=108 Identities=18% Similarity=0.252 Sum_probs=79.1
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCC-CccceecCCCCCCccEEEeCccchhcc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTG-RGVTEYFGIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~G-rG~~e~~g~~~~~~dIv~~TlSKa~G~ 371 (430)
.++++++.++.||+|.+.+ +.+|+++|++||+++|.||+|+..++.+.. ..+....+. .+..|++.||||++++
T Consensus 171 ~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~--~~~~i~~~S~SK~~~~ 248 (418)
T d2r5ea1 171 KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGM--WERTITIGSAGKTFSL 248 (418)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTT--GGGEEEEEEHHHHTTC
T ss_pred cccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccc--cceeeeeecCCccccC
Confidence 4667777889999999887 778889999999999999999877665432 222222222 2457899999999999
Q ss_pred cc---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHH
Q psy2206 372 MG---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQ 406 (430)
Q Consensus 372 ~G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aa 406 (430)
+| ||+++++++++.+....... .....+|.+.++
T Consensus 249 pGlRiG~~~~~~~~i~~~~~~~~~~-~~~~~~~~q~a~ 285 (418)
T d2r5ea1 249 TGWKIGWAYGPEALLKNLQMVHQNC-VYTCATPIQEAI 285 (418)
T ss_dssp GGGCCEEEESCHHHHHHHHHHHTTT-TCSCCHHHHHHH
T ss_pred CCcccccccccchhhhhhhhccccc-ccccccchhhhc
Confidence 99 99999999998887644322 233344554443
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.87 E-value=3.7e-09 Score=105.70 Aligned_cols=107 Identities=18% Similarity=0.233 Sum_probs=89.5
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhc----c
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG----S 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G----~ 371 (430)
++++|++|++-|+...+.||++|+++|+++|++++||.+.+.+++- ..+. ..+||++.|++|.++ .
T Consensus 153 ~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~~---------~Pl~-~GaDiVihS~TKy~~Ghsdv 222 (398)
T d1qgna_ 153 KVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQ---------KALA-LGADLVLHSATKFLGGHNDV 222 (398)
T ss_dssp CEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC---------CTTT-TTCSEEEECTTTTTTCSSSC
T ss_pred cceEEEccCccccccccchHHHHHHHHhhcCCEEEecceeeccccC---------Cchh-hCCCEEEEechhhcCcccce
Confidence 5789999999999999999999999999999999999998766532 1232 357999999999997 3
Q ss_pred ccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.||.++++++++..++...+ .++..++|..++.++..|+.+
T Consensus 223 ~~G~v~~~~~~~~~~~~~~~--~~G~~l~p~~a~ll~rgl~TL 263 (398)
T d1qgna_ 223 LAGCISGPLKLVSEIRNLHH--ILGGALNPNAAYLIIRGMKTL 263 (398)
T ss_dssp CCEEEEECHHHHHHHHHHHH--HHCCCCCHHHHHHHHHHGGGH
T ss_pred eehhhcchhhhhhhhhhhcc--cCCCcCCHHHHHHHHhcchHH
Confidence 56899999999988877432 357789999999998887766
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.86 E-value=1.8e-09 Score=107.50 Aligned_cols=107 Identities=18% Similarity=0.182 Sum_probs=84.9
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS---- 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~---- 371 (430)
++++|++|++.|+...+.||++|+++|++||+++|||++.+.+++- .++. ..+||++.|++|.++.
T Consensus 133 ~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP~~~---------~Pl~-~GaDiVvhS~TKyi~GhsDv 202 (380)
T d1ibja_ 133 QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLS---------RPLE-LGADIVMHSATKFIAGHSDV 202 (380)
T ss_dssp SEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTC---------CGGG-TTCSEEEEETTTTTTCSSCC
T ss_pred CccEEEeccccccccccccHHHHHHHHHHcCCeEEeeccccccccc---------cccc-cCCCEEEecccceeccccCc
Confidence 5789999999999999999999999999999999999998766531 1222 3569999999999963
Q ss_pred ccceeecC-HHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 372 MGGYVAGS-KSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 372 ~GG~v~gs-~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
.||+++.+ +++.+.++... ..++..++|..++.++..|+.+
T Consensus 203 ~~G~v~~~~~~~~~~~~~~~--~~~G~~l~p~~a~ll~rgl~Tl 244 (380)
T d1ibja_ 203 MAGVLAVKGEKLAKEVYFLQ--NSEGSGLAPFDCWLCLRGIKTM 244 (380)
T ss_dssp CCEEEEECSHHHHHHHHHHH--HHTTCBCCHHHHHHHHHHHTTH
T ss_pred cccccccchhhHHHHHHhhc--cccCCcCCHHHHHHHHhcchhh
Confidence 55776554 66667666533 2356778999999999888766
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=98.86 E-value=5.8e-10 Score=112.41 Aligned_cols=120 Identities=18% Similarity=0.082 Sum_probs=77.4
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCC-Ccc----ceecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTG-RGV----TEYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~G-rG~----~e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+++.+++..+++++|.+.|+++|+++|++||++|++||||+.|...... ++. ....+.. ..+|+++.|++|++|
T Consensus 173 ~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~-~~~D~~~~S~HK~lg 251 (462)
T d1c4ka2 173 RPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPE-DPGIIVVQSVHKQQA 251 (462)
T ss_dssp CCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGCTTSCCCCCTT-SCEEEEEECHHHHSS
T ss_pred CCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhccccccCcCCcchhhcccccccc-CCccEEEEecCcccc
Confidence 4556777889999999999999999999999999999999988643211 111 1122233 357999999999998
Q ss_pred ccc-ceee-cCHHHH---------HHHHhcCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 371 SMG-GYVA-GSKSTI---------DYIRANSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 371 ~~G-G~v~-gs~~li---------~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
+.+ |.++ .+.+.+ +.++. +.....+++++...++...+++.+++.+
T Consensus 252 ~~~~g~ll~~~~~~~~~~~~~~~~~~~~~-~~~~~~t~sp~~~~~asl~~a~~~~~~~ 308 (462)
T d1c4ka2 252 GFSQTSQIHKKDSHIKGQLRYCDHKHFNN-SFNLFMSTSPFYPMYAALDVNAAMQEGE 308 (462)
T ss_dssp CCTTCEEEEEECGGGTTSTTCCCHHHHHH-HHHHHSCSSCCHHHHHHHHHHHHHHSHH
T ss_pred cccceEEEEeccccccccchhhhHHHHHH-hhhhcccCCchHHHHHHHHHHHHHHHhh
Confidence 753 4443 332222 12222 1122235566666666666666665433
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=3.1e-09 Score=105.89 Aligned_cols=117 Identities=18% Similarity=0.198 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
++.++..+++ ++++|++|++-|++..+.||++|+++|+++|+++|||++.+.+++-+ +
T Consensus 125 ~~~~~~~~~~-------------~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP~~~~---------P 182 (384)
T d1cs1a_ 125 EQALRAALAE-------------KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQN---------P 182 (384)
T ss_dssp HHHHHHHHHT-------------CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC---------G
T ss_pred HHHHHhhccc-------------cccEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccccCccccc---------c
Confidence 4666666554 46699999999999999999999999999999999999987665321 1
Q ss_pred CCCCCccEEEeCccchhc----cccceeec-CHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 353 IDPREVDILMGTYTKSFG----SMGGYVAG-SKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G----~~GG~v~g-s~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
+. ..+||++.|++|.++ ..||++++ ++++.+.++.... .++..++|..++.++..|+.+
T Consensus 183 l~-~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~--~~G~~~~p~~a~ll~rgL~TL 246 (384)
T d1cs1a_ 183 LA-LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWAN--NIGVTGGAFDSYLLLRGLRTL 246 (384)
T ss_dssp GG-GTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHH--HHTCBCCHHHHHHHHHHHTTH
T ss_pred cc-cCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhh--hhhhccccccHHHHhhccchh
Confidence 22 246999999999996 35677766 5666666654332 356678999999988888766
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=98.81 E-value=2.6e-08 Score=97.91 Aligned_cols=91 Identities=21% Similarity=0.242 Sum_probs=68.5
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
...++++..+.+++|.+.+ +.+|+++|++||++||+||+|...+++..-........ ..+..|+++||||.++ +
T Consensus 171 ~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~~-~ 247 (403)
T d1wsta1 171 VKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFD--DYGRVIYLGTFSKILA-P 247 (403)
T ss_dssp CCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGC--SSSCEEEEEESTTTTC-G
T ss_pred ccccccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccC--CCCcEEEEccccceec-C
Confidence 4567778889999998887 77888899999999999999986555422111111111 2346799999999995 6
Q ss_pred c---ceeecCHHHHHHHHhc
Q psy2206 373 G---GYVAGSKSTIDYIRAN 389 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~ 389 (430)
| ||+++++++++.+...
T Consensus 248 G~RiG~~i~~~~~i~~~~~~ 267 (403)
T d1wsta1 248 GFRIGWVAAHPHLIRKMEIA 267 (403)
T ss_dssp GGCCEEEEECHHHHHHHHHH
T ss_pred cccccccccchHHHHHHHHH
Confidence 6 9999999999877653
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=98.78 E-value=6.3e-09 Score=101.62 Aligned_cols=136 Identities=15% Similarity=0.199 Sum_probs=101.0
Q ss_pred HHHHHHHhCCCCCC--CCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHH-HhcCcEEEEe
Q psy2206 256 SKESVKQSGCALCS--PSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLK-NKYKAYLYVD 332 (430)
Q Consensus 256 ~~~ai~~yG~g~~~--sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La-~~y~~~LivD 332 (430)
..+.+.++|+...- +..++.+++++++ ++++|++|++-|+...+.|++++++++ +++++++|||
T Consensus 54 ~~~~l~~~gi~~~~~d~~d~~~~~~~i~~-------------~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVD 120 (331)
T d1pffa_ 54 FEHQLRKFGVEVDFIDMAVPGNIEKHLKP-------------NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVD 120 (331)
T ss_dssp HHTHHHHTTCEEEEECTTSTTHHHHTCCT-------------TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEE
T ss_pred HHHHHHhcCeEEEEecccchhhHhhhccc-------------ccceeeeecccccccccccchhhhhhhhcccCceEEee
Confidence 34456667764321 2224555554432 588999999999999999999999985 6789999999
Q ss_pred ccccccccCCCCCccceecCCCCCCccEEEeCccchhc----cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHH
Q psy2206 333 EAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG----SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQIL 408 (430)
Q Consensus 333 EAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G----~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaal 408 (430)
.+.+.+++- ..++ ..+||++.|++|.++ ..||+++++++.+...+.......++..++|..++.++
T Consensus 121 nT~atp~~~---------~pl~-~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~ 190 (331)
T d1pffa_ 121 NTFASPILT---------NPLD-LGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLIT 190 (331)
T ss_dssp CTTTHHHHC---------CGGG-GTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHH
T ss_pred ccccccccc---------cccc-cCCCEEEecchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHH
Confidence 998765531 1122 346999999999996 46799999988887766654444568889999999999
Q ss_pred HHHHHH
Q psy2206 409 TSMRII 414 (430)
Q Consensus 409 aaL~~l 414 (430)
..|+.+
T Consensus 191 rgl~Tl 196 (331)
T d1pffa_ 191 RGTLTL 196 (331)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998887
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=98.77 E-value=9.2e-09 Score=102.70 Aligned_cols=135 Identities=13% Similarity=0.201 Sum_probs=99.7
Q ss_pred HHHHHHhCCCCCC--CCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHH-hcCcEEEEec
Q psy2206 257 KESVKQSGCALCS--PSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKN-KYKAYLYVDE 333 (430)
Q Consensus 257 ~~ai~~yG~g~~~--sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~-~y~~~LivDE 333 (430)
.+.+.++|+...- ...++++++.+++ ++++|++|++-|+...+.|+++++++++ ++++.+|||.
T Consensus 116 ~~~~~~~gi~~~~~d~~d~~~~~~~i~~-------------~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDn 182 (394)
T d1e5ea_ 116 EHALTKFGIQVDFINTAIPGEVKKHMKP-------------NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADN 182 (394)
T ss_dssp HTHHHHTTCEEEEECTTSTTHHHHHCCT-------------TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEEC
T ss_pred HHHhhccceeeeccCCCCHHHHHHhhcc-------------cccEEEEeccCCcceeeehhhhhhhccccccCeEEEecC
Confidence 3445556653321 2224666666543 5789999999999999999999998776 4689999999
Q ss_pred cccccccCCCCCccceecCCCCCCccEEEeCccchhc----cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHH
Q psy2206 334 AHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG----SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILT 409 (430)
Q Consensus 334 Ah~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G----~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaala 409 (430)
+.+.+++- . ++. ..+||++.|++|.++ ..||.++++++.+..++........+..++|..++.++.
T Consensus 183 T~atP~~~-------~--Pl~-~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~r 252 (394)
T d1e5ea_ 183 TFCSPMIT-------N--PVD-FGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITR 252 (394)
T ss_dssp TTTCTTTC-------C--GGG-GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHH
T ss_pred cccCcccC-------C--chh-cCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHHh
Confidence 98766532 1 122 246999999999996 466999999999988776443334678899999999999
Q ss_pred HHHHH
Q psy2206 410 SMRII 414 (430)
Q Consensus 410 aL~~l 414 (430)
.|+.+
T Consensus 253 gl~TL 257 (394)
T d1e5ea_ 253 GLSTL 257 (394)
T ss_dssp HHTTH
T ss_pred hchhH
Confidence 88766
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=1.7e-08 Score=100.31 Aligned_cols=93 Identities=18% Similarity=0.251 Sum_probs=72.8
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCC-CccceecCCCCCCccEEEeCccchhcc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTG-RGVTEYFGIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~G-rG~~e~~g~~~~~~dIv~~TlSKa~G~ 371 (430)
++++|++.++.+++|.+.+ +.+|+++|++|++++|.||+|..-.++..- ..+....+. .+..|++.|+||++++
T Consensus 171 ~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~--~~~~i~~~S~SK~~~~ 248 (418)
T d1w7la_ 171 RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGM--WERTLTIGSAGKTFSA 248 (418)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTT--GGGEEEEEEHHHHTTC
T ss_pred cccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHcccc--ccccceecccCccccC
Confidence 5678889999999999886 888899999999999999999876664321 122222222 2457999999999999
Q ss_pred cc---ceeecCHHHHHHHHhcC
Q psy2206 372 MG---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 372 ~G---G~v~gs~~li~~l~~~~ 390 (430)
+| ||+++++++++.++...
T Consensus 249 pG~RvG~~v~~~~~~~~l~~~~ 270 (418)
T d1w7la_ 249 TGWKVGWVLGPDHIMKHLRTVH 270 (418)
T ss_dssp GGGCCEEEECCHHHHHHHHHHH
T ss_pred CCCcccccccchhhhhhhcccc
Confidence 98 99999999998887643
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=98.76 E-value=1.9e-08 Score=100.39 Aligned_cols=95 Identities=14% Similarity=0.208 Sum_probs=69.3
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCC-ccceecC-----CCCCCccEEEeCcc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR-GVTEYFG-----IDPREVDILMGTYT 366 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr-G~~e~~g-----~~~~~~dIv~~TlS 366 (430)
++++|++..+.+++|.+.+ +++|+++|++||++||+||+|+..+++.... .+.+..+ ....+..+++.|||
T Consensus 188 ~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~S 267 (428)
T d1iaya_ 188 KVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLS 267 (428)
T ss_dssp CEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEEST
T ss_pred CceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEEecCC
Confidence 4667777888999999887 7889999999999999999998777653221 1111111 11124468999999
Q ss_pred chhcccc---ceeec-CHHHHHHHHhcC
Q psy2206 367 KSFGSMG---GYVAG-SKSTIDYIRANS 390 (430)
Q Consensus 367 Ka~G~~G---G~v~g-s~~li~~l~~~~ 390 (430)
|+|+++| ||+++ ++.+++.++...
T Consensus 268 K~~~~~GlRiG~~~~~~~~l~~~~~~~~ 295 (428)
T d1iaya_ 268 KDMGLPGFRVGIIYSFNDDVVNCARKMS 295 (428)
T ss_dssp TTSSCGGGCEEEEEESCHHHHHHHHHHH
T ss_pred CcccCCCcccccccccccchhhhhhhhh
Confidence 9998887 88877 567777777643
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=98.75 E-value=1.5e-08 Score=98.06 Aligned_cols=81 Identities=16% Similarity=0.051 Sum_probs=61.4
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
++++|++..+.+++|.+.+ +.+|+++|++||++||+||+|+..+++.......... . .+..|++.|+||+++++
T Consensus 133 ~~~~i~l~~p~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~--~-~~~~v~~~s~SK~~~~~ 209 (361)
T d1d2fa_ 133 ECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNV--A-RGDWALLTSGSKSFNIP 209 (361)
T ss_dssp TEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGT--C-CSSEEEEECSHHHHTCG
T ss_pred CceeEEecccccccccccchhhhhhhhhhhhhhheeeeecccccccccccccccccccc--c-ccccccccccccccccc
Confidence 4667778889999998887 8899999999999999999998766654333222222 2 23468899999999887
Q ss_pred c---ceeecC
Q psy2206 373 G---GYVAGS 379 (430)
Q Consensus 373 G---G~v~gs 379 (430)
| ||+..+
T Consensus 210 g~R~g~~~~~ 219 (361)
T d1d2fa_ 210 ALTGAYGIIE 219 (361)
T ss_dssp GGCCEEEEEC
T ss_pred cccceeeecc
Confidence 7 876543
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=98.74 E-value=2.5e-09 Score=99.76 Aligned_cols=43 Identities=19% Similarity=0.020 Sum_probs=30.9
Q ss_pred EEEEcCccCCCCc---ccCHHHHHHHHHhcCcEEEEeccccccccC
Q psy2206 299 LIVVEGIFSMDGS---IVRLPEIVRLKNKYKAYLYVDEAHSIGALG 341 (430)
Q Consensus 299 lIi~E~v~sm~G~---i~~L~~I~~La~~y~~~LivDEAh~~G~lG 341 (430)
.+++....++.+. +.++.++.++|++||+++++||+|+.+.++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~ 183 (345)
T d1v72a1 138 ACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALV 183 (345)
T ss_dssp EEEEEESSCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHH
T ss_pred eeeeeeccccccccccchhhhhHHHHHHhcCceeeecccccceecc
Confidence 3444444444444 445888889999999999999999865544
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=98.74 E-value=5.9e-09 Score=103.87 Aligned_cols=105 Identities=14% Similarity=0.051 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|+++|++... ..++++|++..+.++.|.+.|+++|.++|++||++|++|+||+.++.. .+ +.....+
T Consensus 196 ~~~l~~~i~~~~~--------~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~-~~-~~~~~~~ 265 (434)
T d2z67a1 196 VEDIENAIKKEIE--------LGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNY-YL-EKLKKAF 265 (434)
T ss_dssp HHHHHHHHHHHHH--------TTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHH-HH-HHHHHHH
T ss_pred HHHHHHHHHhhhh--------cCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhh-cc-ccccccc
Confidence 7999999987531 125778899999999999999999999999999999999999755410 00 1111112
Q ss_pred CCCCCccEEEeCccchhcccc--cee-ecCHHHHHHHHhc
Q psy2206 353 IDPREVDILMGTYTKSFGSMG--GYV-AGSKSTIDYIRAN 389 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~G--G~v-~gs~~li~~l~~~ 389 (430)
. ..+|+++.|++|.++.+. |++ ..++.+++.+...
T Consensus 266 ~--~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~~ 303 (434)
T d2z67a1 266 K--YRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLS 303 (434)
T ss_dssp T--SCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTT
T ss_pred c--CCcceEEEcCccccccCCCccccccCcHHHHHHHHhh
Confidence 1 256999999999997653 233 4567778777653
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.73 E-value=5.4e-08 Score=96.08 Aligned_cols=84 Identities=18% Similarity=0.222 Sum_probs=60.9
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCcc-c-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV-T-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~-~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+++++++..+.+++|.+.+ +.+|+++|++|+++||+||+|+.-++...-... . ...........++++||||+++
T Consensus 174 ~~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~ 253 (412)
T d1bw0a_ 174 KTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLV 253 (412)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTS
T ss_pred cccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCc
Confidence 4667788889999999887 888888899999999999999865554221111 1 1111111223578899999999
Q ss_pred ccc---ceeecC
Q psy2206 371 SMG---GYVAGS 379 (430)
Q Consensus 371 ~~G---G~v~gs 379 (430)
++| ||++++
T Consensus 254 ~~G~RvG~~~~~ 265 (412)
T d1bw0a_ 254 VPGWRLGWLLYV 265 (412)
T ss_dssp CGGGCCEEEEEE
T ss_pred cCCCCccccccc
Confidence 999 998775
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=8.2e-09 Score=102.42 Aligned_cols=153 Identities=12% Similarity=0.094 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhCCCCCC-------CCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHH
Q psy2206 251 LCTERSKESVKQSGCALCS-------PSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKN 323 (430)
Q Consensus 251 ~v~~a~~~ai~~yG~g~~~-------sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~ 323 (430)
.+....+...+++|...-. .-.++++++++.+ ++++|++..+.+++|.+.|+++|.++|+
T Consensus 124 s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~~~~i~~-------------~t~lv~~~~v~~~tG~~~pi~~i~~~~~ 190 (405)
T d1jf9a_ 124 ANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDE-------------KTRLLAITHVSNVLGTENPLAEMITLAH 190 (405)
T ss_dssp GGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCT-------------TEEEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred chHHHHHHHHHHcCcEEEEECCCCCCcCCHHHHHHhccC-------------CcEEEEEecCCCcccccCchHHhhhHHH
Confidence 3456677777788863211 1114556554332 6889999999999999999999999999
Q ss_pred hcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-ceeecCHHHHHHHHhcCCcc---------
Q psy2206 324 KYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-GYVAGSKSTIDYIRANSHVR--------- 393 (430)
Q Consensus 324 ~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~li~~l~~~~~~~--------- 393 (430)
++|++++||-+|+.|.+- ..+...++|+++.|+.|.+|..| |++..++++++.+.......
T Consensus 191 ~~g~~~~vD~~q~~g~~~---------id~~~~~~D~~~~s~hK~~Gp~G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 261 (405)
T d1jf9a_ 191 QHGAKVLVDGAQAVMHHP---------VDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLS 261 (405)
T ss_dssp HTTCEEEEECTTTTTTSC---------CCHHHHTCSEEEEEGGGTTSCSSCEEEEECHHHHTTCCCSSCSSSSEEECCTT
T ss_pred HcCCeeecccceeccccc---------cchhhcCCceeeccccccccCCCceeeeechhhhcccCcccccccccCccccc
Confidence 999999999999987531 11112346999999999999877 88888888766443211000
Q ss_pred -----------cccCCCcHHHHHHHHHHHHHHHccCCchHHHhh
Q psy2206 394 -----------SYATSMPPPVAMQILTSMRIIMGLENGDEGNVR 426 (430)
Q Consensus 394 -----------~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~r 426 (430)
.-..+.+...++++.++++++.+. +.+...++
T Consensus 262 ~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~-g~~~i~~~ 304 (405)
T d1jf9a_ 262 EGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSAL-GLNNIAEY 304 (405)
T ss_dssp TCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHH-CHHHHHHH
T ss_pred cccccccchhhhcCCCCcHHHHHHHHHHHHHHHHh-ChHHHHHH
Confidence 012345667777788888887654 33344433
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.69 E-value=1e-08 Score=102.31 Aligned_cols=107 Identities=14% Similarity=0.125 Sum_probs=85.3
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHH----hcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhc-
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKN----KYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG- 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~----~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G- 370 (430)
++++|++|++-|+...+.|+++|+++|+ ++|+++|||.+.+..++- .++. ..+||++.|++|.++
T Consensus 138 ~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~~---------~Pl~-~GADiVvhS~TKyi~G 207 (393)
T d1n8pa_ 138 NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS---------NPLN-FGADIVVHSATKYING 207 (393)
T ss_dssp SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC---------CGGG-GTCSEEEEETTTTTTC
T ss_pred hcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCcccC---------Cchh-hCCCEEEEccccccCC
Confidence 6889999999999999999999999999 678999999998765431 1122 346999999999996
Q ss_pred ---cccceee-cCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 371 ---SMGGYVA-GSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 371 ---~~GG~v~-gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
..||.++ .++++.+.++... ..++..++|..++.++..|+.+
T Consensus 208 hsDv~~G~v~~~~~~~~~~l~~~~--~~~G~~~~p~~a~ll~rgl~Tl 253 (393)
T d1n8pa_ 208 HSDVVLGVLATNNKPLYERLQFLQ--NAIGAIPSPFDAWLTHRGLKTL 253 (393)
T ss_dssp SSCCCCEEEEESCHHHHHHHHHHH--HHHCCCCCHHHHHHHHHHHTTH
T ss_pred CCccccceeeecchhHHHHHHHHH--hhcCCCCChHHHHHHHhCCcch
Confidence 4668765 5677777776533 2357789999999999888766
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=98.66 E-value=4.7e-08 Score=95.03 Aligned_cols=151 Identities=17% Similarity=0.120 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHhCCCCCCCCC-----HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhc
Q psy2206 251 LCTERSKESVKQSGCALCSPSA-----PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKY 325 (430)
Q Consensus 251 ~v~~a~~~ai~~yG~g~~~sr~-----~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y 325 (430)
.+...+....+++|........ .++.++.|++.+ ..++++|++..+.+++|.+.|+++|.++|+++
T Consensus 104 s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i---------~~~t~~v~i~~~~n~tG~~~~~~~I~~l~~~~ 174 (381)
T d1elua_ 104 GIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHL---------GPKTRLVILSHLLWNTGQVLPLAEIMAVCRRH 174 (381)
T ss_dssp HHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTC---------CTTEEEEEEESBCTTTCCBCCHHHHHHHHHHC
T ss_pred eeeeccccccccccccccccccccccccchHHHHHHhhh---------cccccccccccccccccccchhhHHHHHHhhc
Confidence 4566667777788863322111 233444554431 12578999999999999999999999999984
Q ss_pred ----CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc-c-ceeecCHHHHHHHHhcCCcc------
Q psy2206 326 ----KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM-G-GYVAGSKSTIDYIRANSHVR------ 393 (430)
Q Consensus 326 ----~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~-G-G~v~gs~~li~~l~~~~~~~------ 393 (430)
++++++|.+|+.|.. ...+...++|+++.|++|.++.+ | |++..+++..+.+.....+.
T Consensus 175 ~~~~~~~~~vD~~~~~g~~---------~~~~~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~~~~~~~p~~~~~~~~~~~ 245 (381)
T d1elua_ 175 QGNYPVRVLVDGAQSAGSL---------PLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYG 245 (381)
T ss_dssp CSSSCCEEEEECTTTBTTB---------CCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTTTEEEC
T ss_pred ccccccccccccccccccc---------cccccccccccccccccccccccchhhHHHhhHHHHHhcCcccccccccccc
Confidence 699999999987642 12233335799999999999754 4 67777777766543211000
Q ss_pred --------------cccCCCcHHHHHHHHHHHHHHHccCC
Q psy2206 394 --------------SYATSMPPPVAMQILTSMRIIMGLEN 419 (430)
Q Consensus 394 --------------~~s~s~~P~~~aaalaaL~~l~~~~~ 419 (430)
....+++.....++.++++.++....
T Consensus 246 ~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~ 285 (381)
T d1elua_ 246 AKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGT 285 (381)
T ss_dssp TTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred cccccccccccccccccccccchhhhhhhhhhhhHHHhcc
Confidence 01223555566667788888766543
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=98.66 E-value=2.7e-08 Score=97.57 Aligned_cols=114 Identities=13% Similarity=0.172 Sum_probs=77.8
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
++++|++.++.+++|.+.+ +++|+++|++++++++.||++....+.....-........ .+..|++.|+||.++++
T Consensus 159 ~~~~i~l~~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~SK~~~~p 237 (382)
T d1u08a_ 159 RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQL-RERAVAVSSFGKTYHMT 237 (382)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHH-HTTEEEEEEHHHHTTCG
T ss_pred CccEEEECCCCcccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccc-cCcEEEEeeccccccCC
Confidence 4667778888999999987 6777788899999999999998665543211111111001 23469999999999999
Q ss_pred c---ceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHH
Q psy2206 373 G---GYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMR 412 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~ 412 (430)
| ||+++++++++.+.... .....+..++.+.+ +.++++
T Consensus 238 G~RiG~~v~~~~~~~~~~~~~-~~~~~~~~~~~q~a-~~~~l~ 278 (382)
T d1u08a_ 238 GWKVGYCVAPAPISAEIRKVH-QYLTFSVNTPAQLA-LADMLR 278 (382)
T ss_dssp GGCCEEEECCHHHHHHHHHHH-HHHTSSCCHHHHHH-HHHHHH
T ss_pred cccchhhhccchhHHHHHhhh-cccccccccccccc-cccccc
Confidence 9 99999999998877643 23333334444443 444444
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=98.64 E-value=1.2e-07 Score=93.82 Aligned_cols=92 Identities=24% Similarity=0.297 Sum_probs=69.5
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
.+.++++.++.+++|.+.+ +.+|+++|++|++++|+||+|+...++........... ..+..++++|+||.++ +
T Consensus 183 ~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~--~~~~~i~~~s~sk~~~-~ 259 (420)
T d1vp4a_ 183 VKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIG--GPERVVLLNTFSKVLA-P 259 (420)
T ss_dssp EEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHH--CTTTEEEEEESTTTTC-G
T ss_pred cceeeEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccc--cccceeEEeccccccc-c
Confidence 4567788899999999876 88999999999999999999987666432222111111 1245688899999874 7
Q ss_pred c---ceeecCHHHHHHHHhcC
Q psy2206 373 G---GYVAGSKSTIDYIRANS 390 (430)
Q Consensus 373 G---G~v~gs~~li~~l~~~~ 390 (430)
| ||+++++++++.+....
T Consensus 260 G~RiG~~~~~~~~i~~l~~~~ 280 (420)
T d1vp4a_ 260 GLRIGMVAGSKEFIRKIVQAK 280 (420)
T ss_dssp GGCEEEEECCHHHHHHHHHHH
T ss_pred ccccccccccchhhhhhhhhh
Confidence 7 99999999999887643
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=98.64 E-value=3.7e-08 Score=98.93 Aligned_cols=108 Identities=19% Similarity=0.161 Sum_probs=80.6
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEecccc-ccccCCCCCccceecCCCCCCccEEEeCccchhc----
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHS-IGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG---- 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~-~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G---- 370 (430)
++++|++|++-|++..+.||++|+++|+++|+.++||+..+ ..++ ..++. ..+||++.|++|.++
T Consensus 144 ~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~---------~~Pl~-~GaDiVvhS~TKyl~GHsD 213 (421)
T d2ctza1 144 KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYL---------LRPLA-WGAALVTHSLTKWVGGHGA 213 (421)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTS---------CCGGG-GTCSEEEEETTTTTTCSSC
T ss_pred CceEEEEcCCCcceeEecchHHHHHHHHhcCCceEeccccccccee---------ccccc-cCCcEEEEechhhccCCCC
Confidence 68899999999999999999999999999999999999976 3332 11222 356999999999997
Q ss_pred cccceeecCHH-------------------------------HHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 371 SMGGYVAGSKS-------------------------------TIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 371 ~~GG~v~gs~~-------------------------------li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
..||.|+++.+ .+..++..... .++..++|..|+.++..|+.+
T Consensus 214 ~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~~sP~~a~l~~rgl~TL 287 (421)
T d2ctza1 214 VIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLR-DQGQALGPFEAWVVLLGMETL 287 (421)
T ss_dssp CCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHH-HHCCCCCHHHHHHHHHHHTTH
T ss_pred eEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHH-hccCCCCHHHHHHHhcCCcch
Confidence 46688875432 12222221111 247789999999999987766
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=98.59 E-value=1.3e-08 Score=101.38 Aligned_cols=107 Identities=18% Similarity=0.207 Sum_probs=86.3
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhc--CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhc---
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKY--KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG--- 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y--~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G--- 370 (430)
++++|.+|++.++...+.|+++|+++|+++ |++++||++.+.+++- ..++ ..+||++.|++|.++
T Consensus 143 ~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~~---------~Pl~-~GaDivvhS~TKy~~Ghs 212 (391)
T d1cl1a_ 143 NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLF---------KALD-FGIDVSIQAATKYLVGHS 212 (391)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSS---------CGGG-GTCSEEEEETTTTTTCSS
T ss_pred ccceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccccchhhh---------cccc-cccceEEeecchhccccc
Confidence 578999999999999999999999999775 9999999998766531 1122 346999999999996
Q ss_pred -cccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHH
Q psy2206 371 -SMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRII 414 (430)
Q Consensus 371 -~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l 414 (430)
..||.+++++++.+.+....+ .....++|..++.++..|+.+
T Consensus 213 dvlgG~vv~~~~~~~~~~~~~~--~~G~~~~p~~a~ll~rgl~TL 255 (391)
T d1cl1a_ 213 DAMIGTAVCNARCWEQLRENAY--LMGQMVDADTAYITSRGLRTL 255 (391)
T ss_dssp SCCCEEEEECTTTHHHHHHHHH--HTTCCCCHHHHHHHHHHHTTH
T ss_pred cccccceeccccccccchhhhh--cccccCCchhhhhhhccchhH
Confidence 467888898888877776432 356778999999888887665
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=98.59 E-value=9.3e-09 Score=103.71 Aligned_cols=102 Identities=19% Similarity=0.155 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcc----cCHHHHHHHHHhcCcEEEEeccccccccCCCCCccc
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSI----VRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVT 348 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i----~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~ 348 (430)
+++||+++++.. +...++|++|.+.++.|.. .+|++|.++|++||++|++||||..|.....+....
T Consensus 169 ~~~l~~~i~~~~---------~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~~~~~~~~~~~~ 239 (467)
T d2v1pa1 169 LEGLERGIEEVG---------PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREA 239 (467)
T ss_dssp HHHHHHHHHHHC---------GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCG
T ss_pred HHHHHHHHhhcC---------ccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhhccccccccccc
Confidence 688999987741 2356789999998876633 359999999999999999999997654211111111
Q ss_pred eecCCC--------CCCccEEEeCccchhccc-cceeecCHHHH
Q psy2206 349 EYFGID--------PREVDILMGTYTKSFGSM-GGYVAGSKSTI 383 (430)
Q Consensus 349 e~~g~~--------~~~~dIv~~TlSKa~G~~-GG~v~gs~~li 383 (430)
.+.+.. ....|++..|.+|.++.+ ||+++.+.+.+
T Consensus 240 ~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~gg~i~~~~~~~ 283 (467)
T d2v1pa1 240 EYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSF 283 (467)
T ss_dssp GGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSCEEEEECSGGG
T ss_pred cccCCcccccchhhcccCCEEEecCCCCCCCCCceeEEecchhh
Confidence 122211 024589999999998754 57777665443
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=98.58 E-value=1.2e-08 Score=100.45 Aligned_cols=90 Identities=13% Similarity=0.089 Sum_probs=67.5
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCc-cce-ecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRG-VTE-YFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG-~~e-~~g~~~~~~dIv~~TlSKa~G 370 (430)
+++++++.++.|++|.+.+ +++|+++|++|++++|.||+|+.-+++..... ... ..+. .+..+++.|+||.++
T Consensus 172 ~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~--~~~~~~~~s~sk~~~ 249 (396)
T d2q7wa1 172 GDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAM--HKELIVASSYSKNFG 249 (396)
T ss_dssp TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHH--CSCEEEEEECTTTTT
T ss_pred CcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhh--ccccccccccccccc
Confidence 5778999999999999987 88999999999999999999986656432111 111 1111 133678899999999
Q ss_pred ccc---ceeecCHHHHHHHH
Q psy2206 371 SMG---GYVAGSKSTIDYIR 387 (430)
Q Consensus 371 ~~G---G~v~gs~~li~~l~ 387 (430)
++| ||++++..+++.+.
T Consensus 250 ~~G~R~G~~~~~~~~~~~~~ 269 (396)
T d2q7wa1 250 LYNERVGACTLVAADSETVD 269 (396)
T ss_dssp CGGGCCEEEEEECSSHHHHH
T ss_pred ccCCCccccccchhHHHHHH
Confidence 999 99988876665544
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=98.55 E-value=4.1e-08 Score=96.05 Aligned_cols=80 Identities=19% Similarity=0.240 Sum_probs=66.0
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-c
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-G 374 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G 374 (430)
++++|++..+.+++|.+.|+++|+++|++||+++++|.+|+.|... ..+.....|+++.|..|.+|..| |
T Consensus 143 ~T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~~---------~d~~~~~~D~~~~s~~k~~g~~g~g 213 (391)
T d1p3wa_ 143 DTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLP---------IDLSQLKVDLMSFSGHKIYGPKGIG 213 (391)
T ss_dssp TEEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTBC---------CCTTTSCCSEEEEESTTTTSCSSCE
T ss_pred CcEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCCcc---------ccchhccccccccccccccCCCceE
Confidence 5889999999999999999999999999999999999999877532 22333456899999999998776 7
Q ss_pred eeecCHHHHH
Q psy2206 375 YVAGSKSTID 384 (430)
Q Consensus 375 ~v~gs~~li~ 384 (430)
++..+++.+.
T Consensus 214 ~~~~~~~~~~ 223 (391)
T d1p3wa_ 214 ALYVRRKPRV 223 (391)
T ss_dssp EEEECBTTBC
T ss_pred EEEEecchhc
Confidence 7776665443
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=98.55 E-value=2.4e-07 Score=91.67 Aligned_cols=119 Identities=17% Similarity=0.185 Sum_probs=86.4
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-c
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-G 374 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G 374 (430)
++++|++..+.+++|.+.|+++|.++|+++|+++++|=+|+.|.+- ..+...++|+++.|..|-+|..| |
T Consensus 163 ~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~---------id~~~~~~D~~~~s~hK~~gp~G~g 233 (408)
T d1t3ia_ 163 KTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYP---------LDVQLIDCDWLVASGHKMCAPTGIG 233 (408)
T ss_dssp TEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSC---------CCHHHHTCSEEEEEGGGTTSCTTCE
T ss_pred CceEEEEecccccccccCcHHHHhhhhhccCceeeeccceeccccc---------ccccccCCceEEeccccccCCCCcc
Confidence 6889999999999999999999999999999999999999877531 11211246999999999888776 8
Q ss_pred eeecCHHHHHHHHhcCC--------------------cccccCCCcHHHHHHHHHHHHHHHccCCchHHHh
Q psy2206 375 YVAGSKSTIDYIRANSH--------------------VRSYATSMPPPVAMQILTSMRIIMGLENGDEGNV 425 (430)
Q Consensus 375 ~v~gs~~li~~l~~~~~--------------------~~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~~~ 425 (430)
++..++++...+..... .+- ..+.+.+.++++.++++.+.+. +.+..++
T Consensus 234 ~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e-~Gt~~~~~~~~l~~al~~~~~~-g~~~i~~ 302 (408)
T d1t3ia_ 234 FLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFE-AGTPAIAEAIALGAAVDYLTDL-GMENIHN 302 (408)
T ss_dssp EEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGC-CSSCCHHHHHHHHHHHHHHHHH-CHHHHHH
T ss_pred ccccchhhhhcCCceecCCcccccccccccccCCchhhhc-CCcHHHHHHHHHHHHHHHHHHc-CHHHHHH
Confidence 88888888765432110 111 2344566666677888887654 3334433
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=98.51 E-value=1.7e-07 Score=91.49 Aligned_cols=89 Identities=18% Similarity=0.225 Sum_probs=66.8
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
+++++++.++.+++|.+.+ +++|+++|++|+++||.||+|+..++........ ... .+..+++.|+||.++++
T Consensus 159 ~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~---~~~-~~~~~v~~s~sK~~~~~ 234 (389)
T d2gb3a1 159 RTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASAL---SIE-SDKVVVIDSVSKKFSAC 234 (389)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGG---GSC-CTTEEEEEESTTTTTCG
T ss_pred CccEEEeCCCCccccccchHHHHHHHHhhcccCCEEEEEecccccccccccccccc---ccc-cccccccccccccccCc
Confidence 4667888889999999887 8999999999999999999998765543222211 122 24578889999999999
Q ss_pred c---ceeecCHH-HHHHHHh
Q psy2206 373 G---GYVAGSKS-TIDYIRA 388 (430)
Q Consensus 373 G---G~v~gs~~-li~~l~~ 388 (430)
| ||++++.+ ++..+..
T Consensus 235 GlRiG~~~~~~~~i~~~~~~ 254 (389)
T d2gb3a1 235 GARVGCLITRNEELISHAMK 254 (389)
T ss_dssp GGCCEEEECSCHHHHHHHHH
T ss_pred ccceeeeeccchhHHHHHhh
Confidence 9 99888654 5554444
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.43 E-value=1e-07 Score=94.73 Aligned_cols=104 Identities=15% Similarity=0.086 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++||++|++.. ..++++|++..+.++.|.+.|+++|.++|++||++|++|+||+.++.+-...+. ...+
T Consensus 180 ~~~l~~~i~~~~---------~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~-~~~~ 249 (445)
T d3bc8a1 180 LKAVEAKIQELG---------PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQ-QGAR 249 (445)
T ss_dssp HHHHHHHHHHHC---------GGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHH-HHHH
T ss_pred HHHHHHHHHhcc---------ccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccch-hccC
Confidence 799999998742 235788899999899999999999999999999999999999876532100000 0011
Q ss_pred CCCCCccEEEeCccchhccc-c-cee-ecCHHHHHHHHh
Q psy2206 353 IDPREVDILMGTYTKSFGSM-G-GYV-AGSKSTIDYIRA 388 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~G~~-G-G~v-~gs~~li~~l~~ 388 (430)
+ ..+|++..|.+|.++++ | |++ ..++.+++.+..
T Consensus 250 ~--~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~ 286 (445)
T d3bc8a1 250 V--GRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISK 286 (445)
T ss_dssp H--SCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHH
T ss_pred c--CCcceEEecCccccccCCCCceeeeCChHHHHHHHH
Confidence 1 24689999999998754 3 344 445777777665
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=98.42 E-value=7.5e-08 Score=95.50 Aligned_cols=86 Identities=15% Similarity=0.090 Sum_probs=65.4
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCC-cc-----ceecCCCCCCccEEEeCcc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR-GV-----TEYFGIDPREVDILMGTYT 366 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr-G~-----~e~~g~~~~~~dIv~~TlS 366 (430)
++++|++.++.|++|.+.+ +++|+++|++|++++|.||+|..-+++.... .. ...... .+..|++.|||
T Consensus 176 ~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~s~S 253 (412)
T d1yaaa_ 176 GSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLST--VSPVFVCQSFA 253 (412)
T ss_dssp TCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTT--TCCEEEEEECT
T ss_pred ceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhcccc--CCCeEEEEecC
Confidence 5778999999999999987 9999999999999999999998655542111 10 111122 23468999999
Q ss_pred chhcccc---ceeecCHHHH
Q psy2206 367 KSFGSMG---GYVAGSKSTI 383 (430)
Q Consensus 367 Ka~G~~G---G~v~gs~~li 383 (430)
|.++++| ||++++.+++
T Consensus 254 K~~~~~G~RiG~~~~~~~~~ 273 (412)
T d1yaaa_ 254 KNAGMYGERVGCFHLALTKQ 273 (412)
T ss_dssp TTSCCGGGCEEEEEEECCSC
T ss_pred CccccCcCceEEEEEchhhh
Confidence 9999999 9998875543
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=98.41 E-value=1.4e-07 Score=93.27 Aligned_cols=88 Identities=14% Similarity=0.129 Sum_probs=65.9
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCC-c--cceecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGR-G--VTEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~Gr-G--~~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
++++|++.++.|++|.+.+ +++|+++|++||+++|.||+|..-+++..-. . ....... .+..+++.|+||.+
T Consensus 183 ~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~s~sk~~ 260 (412)
T d1ajsa_ 183 FSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSE--GFELFCAQSFSKNF 260 (412)
T ss_dssp TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHT--TCCEEEEEECTTTS
T ss_pred CcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhh--cccccccccccccc
Confidence 5778999999999999987 9999999999999999999998765543111 1 1111111 23468889999999
Q ss_pred cccc---ceeecCHHHHHH
Q psy2206 370 GSMG---GYVAGSKSTIDY 385 (430)
Q Consensus 370 G~~G---G~v~gs~~li~~ 385 (430)
+++| ||++++...++.
T Consensus 261 ~~~G~R~G~~~~~~~~~~~ 279 (412)
T d1ajsa_ 261 GLYNERVGNLTVVAKEPDS 279 (412)
T ss_dssp CCGGGCEEEEEEECSSHHH
T ss_pred cCCCCCccccccchhHHHH
Confidence 9988 888877554443
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=98.38 E-value=6.3e-08 Score=95.29 Aligned_cols=86 Identities=12% Similarity=0.118 Sum_probs=64.6
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCc-cc-eecCCCCCCccEEEeCccchhc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRG-VT-EYFGIDPREVDILMGTYTKSFG 370 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG-~~-e~~g~~~~~~dIv~~TlSKa~G 370 (430)
+++++++.++.+++|.+.+ +++|+++|++|++++|.||+|..-+++..... .. ...+. .+..|++.||||.++
T Consensus 173 ~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~--~~~~i~~~s~SK~~~ 250 (397)
T d3tata_ 173 RSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASA--GLPALVSNSFSKIFS 250 (397)
T ss_dssp SCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTT--TCCCEECBCCHHHHT
T ss_pred ccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhc--CCceEEEecCccccc
Confidence 5678899999999999987 88899999999999999999987666521111 11 11122 234688999999999
Q ss_pred ccc---ceeecCHHHH
Q psy2206 371 SMG---GYVAGSKSTI 383 (430)
Q Consensus 371 ~~G---G~v~gs~~li 383 (430)
++| ||++++...+
T Consensus 251 ~~G~RiG~~~~~~~~~ 266 (397)
T d3tata_ 251 LYGERVGGLSVMCEDA 266 (397)
T ss_dssp BTTTCCBCCEEECSST
T ss_pred ccCccccccccchhHH
Confidence 999 9988765443
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=98.34 E-value=8.7e-07 Score=88.25 Aligned_cols=123 Identities=19% Similarity=0.290 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
.++|+++.++. +.++||+. +|+.....|+++++++|++.|++|++|-||-.|++.. |.... +
T Consensus 154 yd~l~~~a~~~------------kPklIi~G--~S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~---g~~~s-P 215 (416)
T d1dfoa_ 154 YADLEKQAKEH------------KPKMIIGG--FSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAA---GVYPN-P 215 (416)
T ss_dssp HHHHHHHHHHH------------CCSEEEEE--CSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHH---TSSCC-C
T ss_pred HHHHHHHHHHh------------ccceEEec--ccccccccCHHHHHHHHHhcCceEEcchhhhhcceec---cccCC-c
Confidence 68888887774 23366655 4666788899999999999999999999999888631 32222 2
Q ss_pred CCCCCccEEEeCccchh-ccccceeecC---HHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 353 IDPREVDILMGTYTKSF-GSMGGYVAGS---KSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 353 ~~~~~~dIv~~TlSKa~-G~~GG~v~gs---~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
+ ...||+++|.+|+| |..||+|.++ +++.+.+.....+.+.+.+.....++ ...++...++
T Consensus 216 ~--~~aDvvt~tThKtlrGPrggiI~~~~~~~~~~~~i~~avfPg~qggp~~~~iaa-~Aval~Ea~~ 280 (416)
T d1dfoa_ 216 V--PHAHVVTTTTHKTLAGPRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAG-KAVALKEAME 280 (416)
T ss_dssp T--TTSSEEEEESSSTTCCCSCEEEEESSCCHHHHHHHHHHHTTTTCSSCCHHHHHH-HHHHHHHTTS
T ss_pred c--cccceeeeehhhcccCCCceEEEeccchHhHHHHHHhhhCcccccCccHHHHHH-HHHHHHHHcC
Confidence 3 35699999999999 5568999874 68888887766565555544444443 3344444333
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=98.33 E-value=1e-07 Score=93.94 Aligned_cols=90 Identities=19% Similarity=0.201 Sum_probs=67.8
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCcc---ceecCCCCCCccEEEeCccchh
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGV---TEYFGIDPREVDILMGTYTKSF 369 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~---~e~~g~~~~~~dIv~~TlSKa~ 369 (430)
++++|++.++.|++|.+.+ +++|+++|++|++++|.||+|..-.++..-... ...... ....+++.|+||.+
T Consensus 175 ~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~s~sk~~ 252 (401)
T d7aata_ 175 KSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQ--GIDVVLSQSYAKNM 252 (401)
T ss_dssp TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHT--TCCCEEEEECTTTS
T ss_pred ceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhh--hcccceeEeccccc
Confidence 5778999999999999987 889999999999999999999876665311111 011111 12357789999999
Q ss_pred cccc---ceeecCHHHHHHHH
Q psy2206 370 GSMG---GYVAGSKSTIDYIR 387 (430)
Q Consensus 370 G~~G---G~v~gs~~li~~l~ 387 (430)
+++| ||++++..+++.+.
T Consensus 253 ~~~G~RiG~~~~~~~~~~~~~ 273 (401)
T d7aata_ 253 GLYGERAGAFTVICRDAEEAK 273 (401)
T ss_dssp CCGGGCEEEEEEECSSHHHHH
T ss_pred eeeccccceeecchHHHHHHH
Confidence 9999 99988877666543
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=98.33 E-value=1.1e-06 Score=84.85 Aligned_cols=92 Identities=15% Similarity=0.155 Sum_probs=64.8
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHH--HhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLK--NKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La--~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
++.+|++.++.+++|.+.+-.++..++ .+++.++|+||++...+... ........ .+..|++.||||+||++|
T Consensus 144 ~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~~---~~~~~~~~--~~~~iv~~S~SK~~~laG 218 (354)
T d1fg7a_ 144 GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQA---SLAGWLAE--YPHLAILRTLSKAFALAG 218 (354)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGG---CSGGGTTT--CTTEEEEEESSSTTCCGG
T ss_pred ccceeeccCCCccceeEeeecccccccccccccccccccccchhhcccc---ccchhhcc--cccceEEeCCccccCCCc
Confidence 467889999999999998844433332 34678899999986432221 11111111 344688999999999999
Q ss_pred ---ceeecCHHHHHHHHhcCCc
Q psy2206 374 ---GYVAGSKSTIDYIRANSHV 392 (430)
Q Consensus 374 ---G~v~gs~~li~~l~~~~~~ 392 (430)
||+++++++++.+......
T Consensus 219 lRiGy~i~~~~~i~~l~~~~~~ 240 (354)
T d1fg7a_ 219 LRCGFTLANEEVINLLMKVIAP 240 (354)
T ss_dssp GCCEEEEECHHHHHHHHHHSCS
T ss_pred cccccccccchhhhhhhhhcCc
Confidence 9999999999998875543
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=98.33 E-value=1.4e-07 Score=92.24 Aligned_cols=90 Identities=14% Similarity=0.091 Sum_probs=65.0
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCc-cceecCCCCCCccEEEeCccchhcc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRG-VTEYFGIDPREVDILMGTYTKSFGS 371 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG-~~e~~g~~~~~~dIv~~TlSKa~G~ 371 (430)
++.++++.++.||+|.+.+ +++|+++|++|++++|.||+|....++....- ........ ....+++.|+||.+++
T Consensus 169 ~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~-~~~~~~~~s~sk~~~~ 247 (394)
T d2ay1a_ 169 GDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASR-IPEVLIAASCSKNFGI 247 (394)
T ss_dssp TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHH-CSSEEEEEECTTTTTC
T ss_pred CcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhh-cccccccccccccccC
Confidence 5778999999999999987 88999999999999999999986655422111 11111111 1235778899999998
Q ss_pred cc---ceeecCHHHHHHH
Q psy2206 372 MG---GYVAGSKSTIDYI 386 (430)
Q Consensus 372 ~G---G~v~gs~~li~~l 386 (430)
+| |++.++..+++..
T Consensus 248 ~G~R~G~~~~~~~~~~~~ 265 (394)
T d2ay1a_ 248 YRERTGCLLALCADAATR 265 (394)
T ss_dssp GGGCEEEEEEECSSHHHH
T ss_pred CcccccchhhchhHHHHH
Confidence 87 8887776555443
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=98.32 E-value=3e-07 Score=92.97 Aligned_cols=103 Identities=12% Similarity=0.173 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCC-c---ccCHHHHHHHHHhcCcEEEEecccccccc--------
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDG-S---IVRLPEIVRLKNKYKAYLYVDEAHSIGAL-------- 340 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G-~---i~~L~~I~~La~~y~~~LivDEAh~~G~l-------- 340 (430)
+++|+++|++.. +....+|++|.+.++.| . +.+|++|.++|++||+.|++|+||..|..
T Consensus 160 ~~~le~~I~~~~---------~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~~~~~~~~ 230 (456)
T d1c7ga_ 160 LNKLATLIKEKG---------AENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEA 230 (456)
T ss_dssp HHHHHHHHHHHC---------GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHST
T ss_pred HHHHHHHhhhcC---------CccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchhhhccccc
Confidence 688898888742 23567888888877765 3 34588999999999999999999975531
Q ss_pred CCCCCccc----eecCCCCCCccEEEeCccchhccc-cceeec-CHHHHHHHHh
Q psy2206 341 GPTGRGVT----EYFGIDPREVDILMGTYTKSFGSM-GGYVAG-SKSTIDYIRA 388 (430)
Q Consensus 341 G~~GrG~~----e~~g~~~~~~dIv~~TlSKa~G~~-GG~v~g-s~~li~~l~~ 388 (430)
+-.+..+. +.++ ..|+++.|++|.++.. ||+++. ++++++.++.
T Consensus 231 ~~~~~~i~~i~~~~~~----~ad~~s~s~~K~~~~~~GG~i~~~~~~l~~~~r~ 280 (456)
T d1c7ga_ 231 GYENVSIKDIVHEMFS----YADGCTMSGKKDCLVNIGGFLCMNDEEMFSAAKE 280 (456)
T ss_dssp TCTTSCHHHHHHHHHT----TCSEEEEETTTTTCCSSCEEEEESCHHHHHHHHH
T ss_pred ccCCCChhhhcccccc----ccccEEEeccccccccceeEEEcCCHHHHHHHHH
Confidence 11111111 1122 3589999999999865 677765 4666666553
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=98.30 E-value=6.3e-07 Score=85.96 Aligned_cols=89 Identities=21% Similarity=0.226 Sum_probs=66.9
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc--
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-- 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-- 373 (430)
++.++++..+.+++|.+.+.++|.+++ ++++++|+||+|...... ........ .+..|++.||||+++++|
T Consensus 138 ~~~~l~l~nP~NPtG~~~s~~~l~~~~-~~~~~ii~Dd~~~~~~~~----~~~~~~~~--~~~~i~~~S~SK~~~~~G~R 210 (334)
T d2f8ja1 138 EGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFHGE----SYVDFLKK--YENLAVIRTFSKAFSLAAQR 210 (334)
T ss_dssp TTEEEEEESSCTTTCCCCCHHHHHHHH-TTTCEEEEECTTGGGTCC----CCGGGGGT--CSSEEEEEESTTTSSCTTTC
T ss_pred cceEEEecccccccceeecHHHhhccc-cceeEEeecccchhhccc----cccccccc--CceEEEEecCccccchhhhh
Confidence 455677788899999999988888765 578999999998543211 11111111 245799999999999888
Q ss_pred -ceeecCHHHHHHHHhcCC
Q psy2206 374 -GYVAGSKSTIDYIRANSH 391 (430)
Q Consensus 374 -G~v~gs~~li~~l~~~~~ 391 (430)
||+++++++++.+.....
T Consensus 211 ~G~~~~~~~~i~~l~~~~~ 229 (334)
T d2f8ja1 211 VGYVVASEKFIDAYNRVRL 229 (334)
T ss_dssp EEEEEECHHHHHHHHHHSC
T ss_pred hhhcccchHHHHHHHHhhc
Confidence 999999999999987553
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=2.2e-06 Score=82.86 Aligned_cols=112 Identities=21% Similarity=0.272 Sum_probs=81.1
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc--c
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG--G 374 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G--G 374 (430)
+++|.+..+.+.+|.+.|+++|.++|++||+++++|.+|+.|.+- ..+....+|+++.|..|.++.++ |
T Consensus 145 ~~~v~~~~~~n~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~---------~d~~~~~~D~~~~s~~K~~~gp~g~~ 215 (388)
T d1h0ca_ 145 PVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTP---------LYMDRQGIDILYSGSQKALNAPPGTS 215 (388)
T ss_dssp CSEEEEESEETTTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSC---------CCTTTTTCSEEEEESSSTTCCCTTCE
T ss_pred cceEEEeeeeeccccccCHHHHHHHhhcccccceecccccccccc---------ccccccccceecccccccccCCCceE
Confidence 457777888899999999999999999999999999999877531 22333457899999999997655 5
Q ss_pred eeecCHHHHHHHHhcCC---------------------cccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 375 YVAGSKSTIDYIRANSH---------------------VRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 375 ~v~gs~~li~~l~~~~~---------------------~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
++..++..++.+..... ...+.++++....++..++++.+.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~ 279 (388)
T d1h0ca_ 216 LISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQ 279 (388)
T ss_dssp EEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred EEeecHHHHHhhhhccccccccccccchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHh
Confidence 67788887766543210 11123445555666677788877554
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=98.16 E-value=9.1e-07 Score=88.48 Aligned_cols=98 Identities=16% Similarity=0.084 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCc-cc---CHHHHHHHHHhcCcEEEEeccccccccC----C--
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGS-IV---RLPEIVRLKNKYKAYLYVDEAHSIGALG----P-- 342 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~-i~---~L~~I~~La~~y~~~LivDEAh~~G~lG----~-- 342 (430)
+++||+++++.. +...++|+++.+.+..|. +. +|++|.++|++||++|++||||..+..+ +
T Consensus 168 ~~~l~~~i~~~~---------~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~~~~~~~~~~ 238 (465)
T d1ax4a_ 168 IKKLKENIAQHG---------ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDP 238 (465)
T ss_dssp HHHHHHHHHHHC---------GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCG
T ss_pred HHHHHHHHHhhc---------cccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhhhcccccccc
Confidence 688999988742 235677888887766543 33 4899999999999999999999755421 0
Q ss_pred --CCCccceec-CCCCCCccEEEeCccchhcccc-ceeecCH
Q psy2206 343 --TGRGVTEYF-GIDPREVDILMGTYTKSFGSMG-GYVAGSK 380 (430)
Q Consensus 343 --~GrG~~e~~-g~~~~~~dIv~~TlSKa~G~~G-G~v~gs~ 380 (430)
.|....+.. .+. .-.|++..|.+|..+.++ |+++.+.
T Consensus 239 ~~~~~~~~~i~~~~~-~~~d~~s~s~~k~~~~~~~g~l~~~~ 279 (465)
T d1ax4a_ 239 KYKNATIKEVIFDMY-KYADALTMSAKKDPLLNIGGLVAIRD 279 (465)
T ss_dssp GGTTCCHHHHHHHHG-GGCSEEEEETTSTTCCSSCEEEEESS
T ss_pred cccccchhhhccccc-cccceeEeecccCcccccceeEeecc
Confidence 111111100 000 124788888888887654 6666654
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=98.14 E-value=3.5e-06 Score=80.37 Aligned_cols=119 Identities=14% Similarity=0.215 Sum_probs=80.3
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhc-ccc-
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFG-SMG- 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G-~~G- 373 (430)
++.+|.+-.+-+.+|.+.|+++|.++|++||+++++|-+|++|.+ .+.+....+|+++.|..|.++ .+|
T Consensus 127 ~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa~qs~G~~---------~~d~~~~~~D~~~~s~~K~l~gp~G~ 197 (361)
T d1m32a_ 127 TISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGI---------PMDIAALHIDYLISSANKCIQGVPGF 197 (361)
T ss_dssp TCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTS---------CCCTTTTTCSEEEEESSSTTCCCSSE
T ss_pred CccceEEEeeecccccchhhhhhhhhhcccceeeEeecccccCcc---------cccccccccceEEeeecccccCCCCc
Confidence 456777778888899999999999999999999999999998753 223333467999999999885 456
Q ss_pred ceeecCHHHHHHHHhcCCc----------------ccccCCCcHHHHHHHHHHHHHHHccCCchHH
Q psy2206 374 GYVAGSKSTIDYIRANSHV----------------RSYATSMPPPVAMQILTSMRIIMGLENGDEG 423 (430)
Q Consensus 374 G~v~gs~~li~~l~~~~~~----------------~~~s~s~~P~~~aaalaaL~~l~~~~~~~~~ 423 (430)
|++..+++.++.+...... ..+...++.....+...+++.+..+.+....
T Consensus 198 g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~ 263 (361)
T d1m32a_ 198 AFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAAR 263 (361)
T ss_dssp EEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred eEEEechhhhhhhccccccccccchhhhccccccccccCCCCCchhhhHHHHHHHHHHHhcchhhh
Confidence 7777776655333221110 0112234444555566777766655443333
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.02 E-value=7.5e-06 Score=78.99 Aligned_cols=123 Identities=17% Similarity=0.215 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhc--CcEEEEeccccccccCCCCCcccee
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKY--KAYLYVDEAHSIGALGPTGRGVTEY 350 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y--~~~LivDEAh~~G~lG~~GrG~~e~ 350 (430)
.+++++++.+. +..++++-.+.+.+|...|++++.++|+++ ++++++|-++++|.+ .
T Consensus 124 ~~~~~~~~~~~------------~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa~qs~g~~---------p 182 (382)
T d2bkwa1 124 LELITEKLSQN------------SYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCE---------E 182 (382)
T ss_dssp HHHHHHHHHHS------------CCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTS---------C
T ss_pred hhHHHHHhhhc------------cchheeeeeccccccccccchhhhhhccccccceeeeeecccccccc---------c
Confidence 56777776552 234677777778899999999999998877 499999999997753 2
Q ss_pred cCCCCCCccEEEeCccchh-cccc-ceeecCHHHHHHHHhc-------------------------CCcccccCCCcHHH
Q psy2206 351 FGIDPREVDILMGTYTKSF-GSMG-GYVAGSKSTIDYIRAN-------------------------SHVRSYATSMPPPV 403 (430)
Q Consensus 351 ~g~~~~~~dIv~~TlSKa~-G~~G-G~v~gs~~li~~l~~~-------------------------~~~~~~s~s~~P~~ 403 (430)
..+....+|+++.|-.|.+ |.+| |++..++++++.+... .... +..+++...
T Consensus 183 id~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Tp~~~~ 261 (382)
T d2bkwa1 183 FEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKGA-YFATPPVQL 261 (382)
T ss_dssp CCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCCC-CSSCCCHHH
T ss_pred ccccccCeeEEeecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhcccccccc-cccCCcHHH
Confidence 2333346799999999999 5677 8899999887654321 0011 122355556
Q ss_pred HHHHHHHHHHHHcc
Q psy2206 404 AMQILTSMRIIMGL 417 (430)
Q Consensus 404 ~aaalaaL~~l~~~ 417 (430)
.++..++|+.+.++
T Consensus 262 i~al~~aL~~~~~~ 275 (382)
T d2bkwa1 262 INSLDVALKEILEE 275 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 66777889988665
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.95 E-value=1.6e-05 Score=78.70 Aligned_cols=122 Identities=17% Similarity=0.231 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEc-CccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVE-GIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E-~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
.++++++.++. +.++||+. +.|+ -..|+++++++|++.|++|++|=||-.|.+.. |....
T Consensus 152 ~d~l~~~a~~~------------kPklIi~G~S~y~---r~~d~~~~reIad~vga~l~~D~aH~~GLIa~---g~~~~- 212 (405)
T d1kl1a_ 152 YDDVREKARLH------------RPKLIVAAASAYP---RIIDFAKFREIADEVGAYLMVDMAHIAGLVAA---GLHPN- 212 (405)
T ss_dssp HHHHHHHHHHH------------CCSEEEECCSSCC---SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHT---TSSCC-
T ss_pred HHHHHHHHHhh------------CcceEEecccccc---cccChHHHHHHHhhhCCEEecchhhHhhhhhh---hhcCC-
Confidence 68888888874 23355554 4453 34689999999999999999999999887532 32221
Q ss_pred CCCCCCccEEEeCccchh-ccccceeecCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHHc
Q psy2206 352 GIDPREVDILMGTYTKSF-GSMGGYVAGSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRIIMG 416 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~-G~~GG~v~gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~~ 416 (430)
++ ...||+++|.+|+| |..||+|.+++++.+.+.....+.+.+.+.....++ ...++.....
T Consensus 213 P~--~~aDvvt~tThKtlrGPrgg~I~~~~~~~~~i~~avfPg~qggp~~~~iAa-~Aval~Ea~~ 275 (405)
T d1kl1a_ 213 PV--PYAHFVTTTTHKTLRGPRGGMILCQEQFAKQIDKAIFPGIQGGPLMHVIAA-KAVAFGEALQ 275 (405)
T ss_dssp ST--TTCSEEEEESSSTTCCCSCEEEEECHHHHHHHHHHHTTTTCSSCCHHHHHH-HHHHHHHHHS
T ss_pred hh--hhhhheeccccccccCCCCceEEecchhHHHHHhhhCcccccCcchhHHHH-HHHHHHHHhC
Confidence 23 35799999999999 678999999999999888866665555544444444 3334444333
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=97.86 E-value=2.1e-05 Score=75.61 Aligned_cols=108 Identities=19% Similarity=0.251 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHhCCCCCCCC------C-HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHh
Q psy2206 252 CTERSKESVKQSGCALCSPS------A-PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNK 324 (430)
Q Consensus 252 v~~a~~~ai~~yG~g~~~sr------~-~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~ 324 (430)
......+.+++.|...-.-+ . ++++++++.+ ++++|++..+.+.+|.+.|++++.++++.
T Consensus 101 ~~~~~~~~~~~~g~~v~~vp~~~~~~id~~~l~~~i~~-------------~t~lv~is~v~~~tG~~~~~~~i~~~~~~ 167 (376)
T d1eg5a_ 101 AVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-------------DTFLVSIMAANNEVGTIQPVEDVTRIVKK 167 (376)
T ss_dssp HHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-------------TEEEEEEESBCTTTCBBCCHHHHHHHHHH
T ss_pred hhHHHHHHHHhcCCEEEEEcCCCCCeECHHHHHHhcCC-------------CceEEEEECCccccceeeeehhhhhhhhh
Confidence 34555667777775321111 1 5666666543 58899999999999999999999999866
Q ss_pred c--CcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-ceeecCHH
Q psy2206 325 Y--KAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-GYVAGSKS 381 (430)
Q Consensus 325 y--~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G~v~gs~~ 381 (430)
+ +++++||.+|+.|.+. ..+...++|++++|++|.+|..| |++...++
T Consensus 168 ~~~~~~~~vD~~q~~g~~~---------~d~~~~~~D~~~~s~~K~~gp~G~~~l~~~~~ 218 (376)
T d1eg5a_ 168 KNKETLVHVDAVQTIGKIP---------FSLEKLEVDYASFSAHKFHGPKGVGITYIRKG 218 (376)
T ss_dssp HCTTCEEEEECTTTTTTSC---------CCCTTTCCSEEEEEGGGGTSCTTCEEEEECTT
T ss_pred cccCceeEEEeeecccccc---------ccccccCccceecccceeecCCCceeEEeccC
Confidence 6 8999999999887542 12222356999999999998877 55544443
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=97.85 E-value=3.5e-05 Score=73.46 Aligned_cols=83 Identities=19% Similarity=0.271 Sum_probs=64.3
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc-c-c
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM-G-G 374 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~-G-G 374 (430)
+.+|.+-.+.+.+|.+.|+++|.++|+++|+++++|-+|++|.+. ..++..++|+++.+..|.++.+ | |
T Consensus 144 ~~~v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~---------~~~~~~~~d~~~~s~~K~~~gp~g~~ 214 (377)
T d1vjoa_ 144 PAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVP---------IFLDAWGVDLAYSCSQKGLGCSPGAS 214 (377)
T ss_dssp CSEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSC---------CCTTTTTCSEEECCSSSTTCSCSSCE
T ss_pred ceeeeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhhhh---------hcccccccceeeecccccccCCCEEE
Confidence 345666678888999999999999999999999999999877532 2333345689999999988543 3 6
Q ss_pred eeecCHHHHHHHHh
Q psy2206 375 YVAGSKSTIDYIRA 388 (430)
Q Consensus 375 ~v~gs~~li~~l~~ 388 (430)
++..++..++....
T Consensus 215 ~~~~~~~~~~~~~~ 228 (377)
T d1vjoa_ 215 PFTMSSRAIEKLQR 228 (377)
T ss_dssp EEEECHHHHHHHHT
T ss_pred EecchhhHHhhhhc
Confidence 67778887776553
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=97.83 E-value=1e-05 Score=74.73 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=62.6
Q ss_pred ceEEEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhccc
Q psy2206 296 RKILIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSM 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~ 372 (430)
...++++..+.++.|.+.| |++|+++|++|++++++||+|+.+..+..+......... ..++++.+..+..|..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~g~~ 205 (343)
T d1m6sa_ 129 TSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGY---ADSVMFCLSKGLCAPV 205 (343)
T ss_dssp EEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHT---CSEEEEESSSTTCCSS
T ss_pred ccccccccccccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhccc---cccccccccccccccc
Confidence 3445556666666666654 778888889999999999999866544322222222211 1234444444454667
Q ss_pred cceeecCHHHHHHHHhcCCcccccCCCcH
Q psy2206 373 GGYVAGSKSTIDYIRANSHVRSYATSMPP 401 (430)
Q Consensus 373 GG~v~gs~~li~~l~~~~~~~~~s~s~~P 401 (430)
+|++.+..+.+...........++.+.+.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
T d1m6sa_ 206 GSVVVGDRDFIERARKARKMLGGGMRQAG 234 (343)
T ss_dssp CEEEEECHHHHHHHHHHHHHHTCCCSSTH
T ss_pred cccccccHHHHhhhHhhCcccccccchhH
Confidence 78888999988777664433333333333
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=97.81 E-value=1.4e-05 Score=79.77 Aligned_cols=100 Identities=14% Similarity=0.098 Sum_probs=64.7
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc--
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-- 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-- 373 (430)
++.++++.++.||+|.+.. +-.+++.+|.||+|. ++.-..+. . +.+.+|++.||||+||++|
T Consensus 196 ~~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~----~~~f~~~~---~--~~~~~Ivl~S~SK~fglaGlR 259 (425)
T d2hoxa1 196 EQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYY----WPHYTPIK---Y--KADEDILLFTMSKFTGHSGSR 259 (425)
T ss_dssp GGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTC----STTTSCCC---S--CBCCSEEEEEHHHHTSCGGGC
T ss_pred CceEEEEECCCCCCcchhh-------hhhhCCEEEEecccc----Cccccchh---h--hcCCeEEEEeCHHhccCcchh
Confidence 5678999999999998632 234689999999983 22111111 1 2345899999999999999
Q ss_pred -ceee-cCHHHHHHHHhcCCcccccCCCcHHHHHHHHHHHHH
Q psy2206 374 -GYVA-GSKSTIDYIRANSHVRSYATSMPPPVAMQILTSMRI 413 (430)
Q Consensus 374 -G~v~-gs~~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~ 413 (430)
||++ .++.+++.+.... .+...+...+.+ .+++++|+.
T Consensus 260 iGw~i~~~~~i~~~~~~~~-~~~~~~vs~~~Q-~aa~~aL~~ 299 (425)
T d2hoxa1 260 FGWALIKDESVYNNLLNYM-TKNTEGTPRETQ-LRSLKVLKE 299 (425)
T ss_dssp CEEEEECCHHHHHHHHHHH-HHHTSSCCHHHH-HHHHHHHHH
T ss_pred eeeEEeCCHHHHHHHHHhh-ccCcccCCHHHH-HHHHHHhhc
Confidence 9964 4577777766533 222233334444 345555543
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=97.71 E-value=3.1e-05 Score=74.20 Aligned_cols=118 Identities=21% Similarity=0.276 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecC
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFG 352 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g 352 (430)
+++|++++.+ ++++||+-.+| |..+|+.+|.++|++||+.||.|.||++|..-. + ...|
T Consensus 109 ~~~l~~~i~~-------------~tkaIi~~h~~---G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~-~----~~~g 167 (376)
T d1mdoa_ 109 PEHIEAAITP-------------QTKAIIPVHYA---GAPADLDAIYALGERYGIPVIEDAAHATGTSYK-G----RHIG 167 (376)
T ss_dssp HHHHHHHCCT-------------TEEEECCBCGG---GCCCCHHHHHHHHHHHTCCBCEECTTCTTCEET-T----EETT
T ss_pred HHHHHHhcCC-------------CCeEEEEeCCC---CCccchhHHHHHHHhcCceEEeccchhccCeeC-C----eecc
Confidence 6777777643 35566654554 888999999999999999999999999875211 1 1112
Q ss_pred CCCCCccEEEeCc--cchhcc-ccceeec-CHHHHHHHHhcCC-c---------------------ccccCCCcHHHHHH
Q psy2206 353 IDPREVDILMGTY--TKSFGS-MGGYVAG-SKSTIDYIRANSH-V---------------------RSYATSMPPPVAMQ 406 (430)
Q Consensus 353 ~~~~~~dIv~~Tl--SKa~G~-~GG~v~g-s~~li~~l~~~~~-~---------------------~~~s~s~~P~~~aa 406 (430)
- .+..+-|| +|.+++ .||+++. ++++.+.++.... + ..+..-++..+++.
T Consensus 168 ~----~g~~~~Sf~~~K~l~~g~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~n~~~~~~~Aai 243 (376)
T d1mdoa_ 168 A----RGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAI 243 (376)
T ss_dssp S----SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCEESSCCCBCCCCHHHHHH
T ss_pred c----ccCccccCCCcCCCCCCCCCEEEEechhHHHHHHhhcccCCcccccccccccccccccchhcccccccchhhhhh
Confidence 1 12334455 487754 4576655 5666666554211 0 12344567788887
Q ss_pred HHHHHHHHH
Q psy2206 407 ILTSMRIIM 415 (430)
Q Consensus 407 alaaL~~l~ 415 (430)
.+..|+.+.
T Consensus 244 ~~~qL~~~~ 252 (376)
T d1mdoa_ 244 ALAQLQKLD 252 (376)
T ss_dssp HHHHHHTHH
T ss_pred hhhhhhhhh
Confidence 777776553
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=97.68 E-value=2e-05 Score=76.24 Aligned_cols=81 Identities=21% Similarity=0.266 Sum_probs=62.9
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchh-cccc-
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSF-GSMG- 373 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~-G~~G- 373 (430)
++++|++..+.+.+|.+.|+++|+++|++++++++||=+|+.|.+.- .+...++|+++.+.+|.+ +.+|
T Consensus 164 ~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~---------~~~~~~~d~~~~s~~K~~~~~~g~ 234 (404)
T d1qz9a_ 164 DTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPV---------DLHQAGADYAIGCTYKYLNGGPGS 234 (404)
T ss_dssp TEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCC---------CHHHHTCSEEEECSSSTTCCCTTC
T ss_pred CceEEEEecccccccceecHHHHhccccccccceeEEeecccccccc---------ccccccceEEEEechhhcccCCce
Confidence 57899999999999999999999999999999999999999875421 111124588899999976 3344
Q ss_pred -ceeecCHHHHHH
Q psy2206 374 -GYVAGSKSTIDY 385 (430)
Q Consensus 374 -G~v~gs~~li~~ 385 (430)
|++..++...+.
T Consensus 235 ~g~~~~~~~~~~~ 247 (404)
T d1qz9a_ 235 QAFVWVSPQLCDL 247 (404)
T ss_dssp CCEEEECTTTTTT
T ss_pred EEEEEechhhhhh
Confidence 566666655543
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=97.46 E-value=0.00038 Score=66.49 Aligned_cols=112 Identities=17% Similarity=0.196 Sum_probs=77.5
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc--c
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG--G 374 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G--G 374 (430)
..++.+-.+.+.+|.+.|+++|.++|++++++++||-++++|.. ...+....+|+++.|-.|.++.++ |
T Consensus 143 ~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ss~g~~---------pid~~~~~~d~~~~s~~K~~~gp~G~g 213 (388)
T d2ch1a1 143 PKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGV---------PFYMDKWEIDAVYTGAQKVLGAPPGIT 213 (388)
T ss_dssp CSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTB---------CCCTTTTTCCEEECCCC-CCCCCSSCE
T ss_pred cceeeeeecccccccccchhhhcchhccccceeeeeeeeccccc---------ccchhccCceEEEEccccccCCCCeEE
Confidence 34666677778899999999999999999999999999987642 223333457899999999996544 6
Q ss_pred eeecCHHHHHHHHhcCCc---------------------ccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 375 YVAGSKSTIDYIRANSHV---------------------RSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 375 ~v~gs~~li~~l~~~~~~---------------------~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
++..++..++.+.....+ ..+...++...+.++.++++.+..+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~ 277 (388)
T d2ch1a1 214 PISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEE 277 (388)
T ss_dssp EEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred EEeccHHHHHhhhcccCccccccccchhhhhhhcccccccccCccchHHHHHHHHHHHHHHHHh
Confidence 777888777765532111 1123344555566667777776544
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=97.45 E-value=0.00015 Score=72.75 Aligned_cols=123 Identities=17% Similarity=0.172 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEc-CccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVE-GIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E-~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
.+.++++.++. +..+||+. +.| -...|+++++++|++.|++|++|=||-.|++.. |....
T Consensus 165 yd~~~~~a~~~------------kPklIi~G~S~y---~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~---g~~~s- 225 (463)
T d2a7va1 165 YNQLALTARLF------------RPRLIIAGTSAY---ARLIDYARMREVCDEVKAHLLADMAHISGLVAA---KVIPS- 225 (463)
T ss_dssp HHHHHHHHHHH------------CCSEEEECCSSC---CSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHT---TSSCC-
T ss_pred HHHHHHHHhhc------------CCceEEeccccc---ccccCHHHHHHHhhcccceEEechhhhhHHhhh---hhhcC-
Confidence 68888888774 23355554 344 345689999999999999999999999888631 33222
Q ss_pred CCCCCCccEEEeCccchh-ccccceeecCH---------------HHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHH
Q psy2206 352 GIDPREVDILMGTYTKSF-GSMGGYVAGSK---------------STIDYIRANSHVRSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~-G~~GG~v~gs~---------------~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
++ ...||+++|.+|+| |..||+|.+++ ++.+.+.....+.+.+. +..-..|+...++...+
T Consensus 226 P~--~~aDvvt~tTHKTlrGPrgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qgg-ph~h~iAa~Ava~~ea~ 302 (463)
T d2a7va1 226 PF--KHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGG-PHNHAIAAVAVALKQAC 302 (463)
T ss_dssp GG--GTCSEEEEESSGGGCSCSCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCS-CCHHHHHHHHHHHHHHH
T ss_pred hh--hhhhhhhchhhhhhcCCCceEEEEcccccccccccCccchhHHHHHhhhhcCcccchh-hhhhhHHHHHHHHHHhc
Confidence 12 24699999999999 67789988765 55666665444433333 33333443444554444
Q ss_pred cc
Q psy2206 416 GL 417 (430)
Q Consensus 416 ~~ 417 (430)
+.
T Consensus 303 ~~ 304 (463)
T d2a7va1 303 TP 304 (463)
T ss_dssp SH
T ss_pred Cc
Confidence 43
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=97.44 E-value=4.8e-05 Score=68.68 Aligned_cols=87 Identities=21% Similarity=0.128 Sum_probs=47.3
Q ss_pred EEEEcCccCCCCcccC---HHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc-c
Q psy2206 299 LIVVEGIFSMDGSIVR---LPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG-G 374 (430)
Q Consensus 299 lIi~E~v~sm~G~i~~---L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G-G 374 (430)
.+++....++.|.+.+ +..++++|+++++++++|++|..+.+...+......... ...++...+..|..+..+ +
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 210 (340)
T d1svva_ 133 KLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIA--RLTDMFYIGATKAGGMFGEA 210 (340)
T ss_dssp EEEEEESSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHH--HHCSEEEEECTTTTCSSCEE
T ss_pred eeeeecccccccccccHHHhhhhhcccccccceeeeeccceeeeeccccccccccccc--ccceeeecCCcccccccccc
Confidence 3444444445555544 667789999999999999999866654433322111111 112455555555554433 3
Q ss_pred eeecCHHHHHHHH
Q psy2206 375 YVAGSKSTIDYIR 387 (430)
Q Consensus 375 ~v~gs~~li~~l~ 387 (430)
+............
T Consensus 211 ~~~~~~~~~~~~~ 223 (340)
T d1svva_ 211 LIILNDALKPNAR 223 (340)
T ss_dssp EEECSGGGCTTHH
T ss_pred ccccchhhhhhhh
Confidence 3444444443333
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=97.41 E-value=0.0002 Score=71.92 Aligned_cols=122 Identities=16% Similarity=0.188 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEc-CccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVE-GIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E-~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~ 351 (430)
.++|+++.++. +..+||+. +.| --..|+++++++|++.|++|++|=||-.|++. .|....
T Consensus 169 yd~l~~~a~~~------------kPklIi~G~S~y---~r~~d~~~~reIad~vga~l~~D~aH~aGLIA---~g~~~s- 229 (470)
T d1rv3a_ 169 YDRLEENARLF------------HPKLIIAGTSCY---SRNLDYGRLRKIADENGAYLMADMAHISGLVV---AGVVPS- 229 (470)
T ss_dssp HHHHHHHHHHH------------CCSEEEECCSSC---CSCCCHHHHHHHHHHTTCEEEEECTTTHHHHH---HTSSCC-
T ss_pred HHHHHHHHHhh------------CcceEeechhhc---cccCCHHHHHHHHhccCCeEEecchhhhhhcc---ccccCC-
Confidence 68888887764 23355554 344 34468999999999999999999999988753 122221
Q ss_pred CCCCCCccEEEeCccchh-ccccceeecCH---------------HHHHHHHhcCCcccccCCCcHHHHHHHHHHHHHHH
Q psy2206 352 GIDPREVDILMGTYTKSF-GSMGGYVAGSK---------------STIDYIRANSHVRSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~-G~~GG~v~gs~---------------~li~~l~~~~~~~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
++ ...||+++|.+|+| |..||+|.+.+ ++.+.+.....+.+.+. +..-..|+...++....
T Consensus 230 Pl--~~aDvvt~tTHKtlrGPrgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qgg-ph~~~IAa~Ava~~ea~ 306 (470)
T d1rv3a_ 230 PF--EHCHVVTTTTHKTLRGCRAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGG-PHNHAIAGVAVALKQAM 306 (470)
T ss_dssp GG--GTCSEEEEESSGGGCCCSCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCS-CCHHHHHHHHHHHHHHT
T ss_pred hh--heeeeeeeehhhhccCCcceEEEEccccccccccccchhHHHHHHHHhhhcCcccccc-chhhHHHHHHHHHHHhc
Confidence 12 24699999999999 67889998765 36666665443433333 33333443334555443
Q ss_pred c
Q psy2206 416 G 416 (430)
Q Consensus 416 ~ 416 (430)
.
T Consensus 307 ~ 307 (470)
T d1rv3a_ 307 T 307 (470)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=97.16 E-value=0.00055 Score=65.75 Aligned_cols=109 Identities=14% Similarity=0.161 Sum_probs=74.3
Q ss_pred EEEEcCccCCCCcccCHHHHHHHHHhcC--cEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchh-cccc-c
Q psy2206 299 LIVVEGIFSMDGSIVRLPEIVRLKNKYK--AYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSF-GSMG-G 374 (430)
Q Consensus 299 lIi~E~v~sm~G~i~~L~~I~~La~~y~--~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~-G~~G-G 374 (430)
.|+.-..-+.+|.+.|+++|.++|++|+ +++++|-+.++|.. ...++...+|+++.+-.|++ |.+| |
T Consensus 123 ~v~~~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~---------~i~~d~~~iD~~~~~sqK~l~gppG~~ 193 (348)
T d1iuga_ 123 GLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVG---------EVALEAMGVDAAASGSQKGLMCPPGLG 193 (348)
T ss_dssp EEEEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTB---------CCCSGGGTCSEEEEESSSTTCCCSCEE
T ss_pred eeEEEecchhhhhhccHHHHHHHHHhhhccceeechhhhccccc---------ccccccccCCEEEeccccceecCCcee
Confidence 4444444455799999999999999884 78999999887642 12233235799999999999 6777 8
Q ss_pred eeecCHHHHHHHHh-------------cCCcccccCCCcHHHHHHHHHHHHHHHcc
Q psy2206 375 YVAGSKSTIDYIRA-------------NSHVRSYATSMPPPVAMQILTSMRIIMGL 417 (430)
Q Consensus 375 ~v~gs~~li~~l~~-------------~~~~~~~s~s~~P~~~aaalaaL~~l~~~ 417 (430)
+++.+++.++.++. ........ ++|...+.+..++|+.+.++
T Consensus 194 ~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~~~~-Tp~v~~i~~l~~aL~~~~~~ 248 (348)
T d1iuga_ 194 FVALSPRALERLKPRGYYLDLARELKAQKEGESAW-TPAINLVLAVAAVLEEVLPR 248 (348)
T ss_dssp EEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSS-CCCHHHHHHHHHHHHHHGGG
T ss_pred eeeechHHHhhhcccccccchhhhhhhhccCcccc-cccchHHHHHHHHHHHHHHH
Confidence 88888887664321 11111122 34555666677889887655
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.78 E-value=0.0024 Score=63.94 Aligned_cols=95 Identities=19% Similarity=0.057 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccc-cCCCCCccceec
Q psy2206 273 PSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGA-LGPTGRGVTEYF 351 (430)
Q Consensus 273 ~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~-lG~~GrG~~e~~ 351 (430)
+++|++.|++....|. ...+||.-.--..+|.+.||++|.++|++|++||-||=||+..+ +-...+-. ..
T Consensus 219 ~~~L~~~i~~~~~~g~-------~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~--~~ 289 (476)
T d1js3a_ 219 ASALQEALERDKAAGL-------IPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHL--LN 289 (476)
T ss_dssp HHHHHHHHHHHHHTTC-------EEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGG--GT
T ss_pred HHHHHHHHHHHHhcCC-------CcEEEeecCCCccceeeccHHHHHHHHHhcCcEEEEecccchhhhhhcchhhh--hc
Confidence 7999999988643322 34556666566779999999999999999999999999987443 22222211 12
Q ss_pred CCCCCCccEEEeCccchhcccc--ceeec
Q psy2206 352 GIDPREVDILMGTYTKSFGSMG--GYVAG 378 (430)
Q Consensus 352 g~~~~~~dIv~~TlSKa~G~~G--G~v~g 378 (430)
|+ ..+|-+.-.++|.++.+. |++..
T Consensus 290 gi--~~aDSit~d~HK~l~~P~~~g~~l~ 316 (476)
T d1js3a_ 290 GV--EFADSFNFNPHKWLLVNFDCSAMWV 316 (476)
T ss_dssp TG--GGCSEEEECHHHHSSCCSSCEEEEE
T ss_pred CC--cccceeeecCccccccCCcceeecc
Confidence 33 357889999999987654 44444
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=96.40 E-value=0.0017 Score=62.83 Aligned_cols=109 Identities=18% Similarity=0.154 Sum_probs=70.8
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCc--cchhcc-c
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTY--TKSFGS-M 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~Tl--SKa~G~-~ 372 (430)
+++.|++..++ |..+++.+|.++|++|+++||.|-||+.|..- .|+-+. .+| |+.+.|| +|.+++ .
T Consensus 122 ~tk~i~~~~~~---g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~-~g~~~g-~~g------~~~~~Sf~~~K~i~~g~ 190 (384)
T d1b9ha_ 122 RTKVIMPVHMA---GLMADMDALAKISADTGVPLLQDAAHAHGARW-QGKRVG-ELD------SIATFSFQNGKLMTAGE 190 (384)
T ss_dssp TEEEECCBCGG---GCCCCHHHHHHHHHHHTCCBCEECTTCTTCEE-TTEEGG-GSS------SCEEEECCTTSSSCSSS
T ss_pred ccccccccccc---ccccccccchhhhhhhhhhhhhhhceeccccc-CCEecC-ccc------ccceecccccccccccc
Confidence 46667665555 77889999999999999999999999987632 122111 122 4445565 788753 4
Q ss_pred cceeec-CHHHHHHHHhcC---C-------c-----ccccCCCcHHHHHHHHHHHHHHH
Q psy2206 373 GGYVAG-SKSTIDYIRANS---H-------V-----RSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 373 GG~v~g-s~~li~~l~~~~---~-------~-----~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
||+++. ++++.+.++... . . ..+..-+++++|+.++..|+.+.
T Consensus 191 GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~n~rms~l~Aaig~~qL~~ld 249 (384)
T d1b9ha_ 191 GGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIAGSNMRLNEFSASVLRAQLARLD 249 (384)
T ss_dssp CEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSCCCBCBCBHHHHHHHHHHHTTHH
T ss_pred cchhhhhhHHHHHHHHHHHhcCCCCccccccccccccccccccccchhhhhhhhhhhcc
Confidence 676655 566666554321 0 0 11345578899888888877664
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=96.31 E-value=0.0057 Score=58.14 Aligned_cols=108 Identities=18% Similarity=0.298 Sum_probs=72.0
Q ss_pred eEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCcc--chhccc-c
Q psy2206 297 KILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYT--KSFGSM-G 373 (430)
Q Consensus 297 ~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlS--Ka~G~~-G 373 (430)
+++|++-.++ |..+++++|.++|+++|+.||-|-||++|..- .|. ..|- -.|+.+-||. |.+++. |
T Consensus 112 ~~aii~~~~~---G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~-~~~----~~G~---~gd~~~fSf~~~K~l~tgeG 180 (374)
T d1o69a_ 112 PKALILTHLY---GNAAKMDEIVEICKENDIVLIEDAAEALGSFY-KNK----ALGT---FGEFGVYSYNGNKIITTSGG 180 (374)
T ss_dssp CCEEEEECGG---GCCCCHHHHHHHHHHTTCEEEEECTTCTTCEE-TTE----ETTS---SSSEEEEECCTTSSSCCSSC
T ss_pred cccccccccc---cchhhhHHHHHHhhccCcchhhhhhhhhcceE-CCe----ecCC---CCceEEEeccCccccccccc
Confidence 3345544444 78889999999999999999999999987521 122 1221 1277777885 877543 3
Q ss_pred cee-ecCHHHHHHHHhcC---Cc---------ccccCCCcHHHHHHHHHHHHHHH
Q psy2206 374 GYV-AGSKSTIDYIRANS---HV---------RSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 374 G~v-~gs~~li~~l~~~~---~~---------~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
|++ .-++++++.++... .. ..+..-++.++|+..+..|+.+.
T Consensus 181 G~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~ei~Aaig~~qL~~l~ 235 (374)
T d1o69a_ 181 GMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQMEVLE 235 (374)
T ss_dssp EEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHHTTHH
T ss_pred eeehhhhHHHHHhhccccccccccccccccccCCccccccchhhhhhHHHHhhhh
Confidence 554 44688887776421 11 11345589999998888877664
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=96.24 E-value=0.0073 Score=57.50 Aligned_cols=109 Identities=15% Similarity=0.108 Sum_probs=72.5
Q ss_pred ceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCc--cchhcc-c
Q psy2206 296 RKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTY--TKSFGS-M 372 (430)
Q Consensus 296 ~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~Tl--SKa~G~-~ 372 (430)
++.+|++=.+| |..+++++|.++|++++++||-|-||++|..-. |+ ..|- .-|+.+-|| +|.+++ .
T Consensus 120 ~t~avi~vh~~---G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~-~~----~~G~---~g~~~~~Sf~~~K~l~~g~ 188 (371)
T d2fnua1 120 RTKAIVSVDYA---GKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQ-NK----KVGG---FALASVFSFHAIKPITTAE 188 (371)
T ss_dssp TEEEEEEECGG---GCCCCHHHHHHHHHHHTCEEEEECTTCTTCEET-TE----ETTS---SSSEEEEECCTTSSSCCSS
T ss_pred hhhcccccccc---ccccccccccccccccchhhccchhhccCceec-cc----cCCc---ccccccccccccccccccc
Confidence 34455544454 888999999999999999999999999876311 11 1221 125556666 787754 4
Q ss_pred cceeec-CHHHHHHHHhcCC--------------cccccCCCcHHHHHHHHHHHHHHH
Q psy2206 373 GGYVAG-SKSTIDYIRANSH--------------VRSYATSMPPPVAMQILTSMRIIM 415 (430)
Q Consensus 373 GG~v~g-s~~li~~l~~~~~--------------~~~~s~s~~P~~~aaalaaL~~l~ 415 (430)
||+++. ++++.+.++.... ...+..-++.++|+.++..|+.+.
T Consensus 189 GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~r~sel~Aaigl~qL~~l~ 246 (371)
T d2fnua1 189 GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALGLSQLKKAP 246 (371)
T ss_dssp CEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHHHHHHTTHH
T ss_pred ceEEEeechhhhhhcccccccccccccccccccccccccccccchhhhhhhhhhhhcc
Confidence 566655 5677777765221 012455688999988888887664
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=95.94 E-value=0.00036 Score=66.23 Aligned_cols=55 Identities=13% Similarity=0.141 Sum_probs=44.0
Q ss_pred CCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 308 MDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 308 m~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
.+|.+.|+++|.++|++||++++||-++++|.. .++.++.||.+.|.+|.++.+|
T Consensus 148 ~tg~~~~~~~i~~~~~~~~al~~vDavss~g~~-----------~id~~~~di~~~s~~k~~~~~~ 202 (361)
T d2c0ra1 148 TSNETIEGAQFKAFPDTGSVPLIGDMSSDILSR-----------PFDLNQFGLVYAGAQKNLGPSG 202 (361)
T ss_dssp ESEETTTTEECSSCCCCTTSCEEEECTTTTTSS-----------CCCGGGCSEEEEETTTTTCCSS
T ss_pred ecccceecceEEEeeccCCceEEEEeecccccc-----------ccccccceeEEEeccccccccc
Confidence 468888999999999999999999999986532 2333456777889999998766
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=94.94 E-value=0.014 Score=57.66 Aligned_cols=107 Identities=12% Similarity=-0.031 Sum_probs=70.4
Q ss_pred HHHHHHHhCCCCCC--------CCCHHHHHHHHHHHhhcCCCCCCCCCceEEEEEcCccCCCCcccCHHHHHHHH-----
Q psy2206 256 SKESVKQSGCALCS--------PSAPSSLEAGLQKALLEGQPHSGKPWRKILIVVEGIFSMDGSIVRLPEIVRLK----- 322 (430)
Q Consensus 256 ~~~ai~~yG~g~~~--------sr~~~~Le~~L~~~~~~~~p~~~~~~~~~lIi~E~v~sm~G~i~~L~~I~~La----- 322 (430)
..++++.+|++.-. .-.+++|++++++ ++++|+.-.....+|.+-|+.+|.++|
T Consensus 164 ~~Kaa~~~gi~~~~v~~~~~~~~~d~~~L~~~i~~-------------~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~ 230 (450)
T d1pmma_ 164 WHKFARYWDVELREIPMRPGQLFMDPKRMIEACDE-------------NTIGVVPTFGVTYTGNYEFPQPLHDALDKFQA 230 (450)
T ss_dssp HHHHHHHTTCEEEECCCBTTBCSCCHHHHHHHCCT-------------TEEEEECBBSCTTTCBBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCceEeeecCCCCcCcHHHHHHHhhh-------------CceEEEeeeeeccCCCccccchhhHHHHHHHH
Confidence 44566667764211 1116788877654 477888777778899999988887775
Q ss_pred -HhcCcEEEEecccccccc--CCCCCccceecCCCCCCccEEEeCccchhc-ccc-ceeecC
Q psy2206 323 -NKYKAYLYVDEAHSIGAL--GPTGRGVTEYFGIDPREVDILMGTYTKSFG-SMG-GYVAGS 379 (430)
Q Consensus 323 -~~y~~~LivDEAh~~G~l--G~~GrG~~e~~g~~~~~~dIv~~TlSKa~G-~~G-G~v~gs 379 (430)
+++|+++-||=|++.++. -..... -.+++ ..+|-+..+.+|.++ ..| |++...
T Consensus 231 a~~~~i~lHVDAA~gG~~~p~~~~~~~--~~~~~--~~aDSi~~s~HK~~~~p~g~g~l~~r 288 (450)
T d1pmma_ 231 DTGIDIDMHIDAASGGFLAPFVAPDIV--WDFRL--PRVKSISASGHKFGLAPLGCGWVIWR 288 (450)
T ss_dssp HHCCCCCEEEECTTGGGTHHHHCTTCC--CSTTS--TTEEEEEEETTTTTCCCSSCEEEEES
T ss_pred HhccCcEEEeehhhccceeeeechhhh--hhhcc--cceeEeecChhhccCCCCCeeEEEec
Confidence 568999999999875432 111111 12333 368999999999775 345 666554
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=94.22 E-value=0.0034 Score=58.77 Aligned_cols=54 Identities=13% Similarity=0.159 Sum_probs=41.2
Q ss_pred CCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcccc
Q psy2206 309 DGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGSMG 373 (430)
Q Consensus 309 ~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~~G 373 (430)
+|.+.|+++|.++|++||++++||=++++|.+ .++.++.|+.+.+++|.++.+|
T Consensus 149 tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~-----------~id~~~~~vd~~~~~~~k~~~~ 202 (360)
T d1w23a_ 149 SNNTIYGTQYQNFPEINHAPLIADMSSDILSR-----------PLKVNQFGMIYAGAQKNLGPSG 202 (360)
T ss_dssp SEETTTTEECSSCCCCCSSCEEEECTTTTTSS-----------CCCGGGCSEEEEETTTTTSCTT
T ss_pred CCccccceeeeeccccceeeEEeecccccccc-----------ccccccccceEEeeccccccCC
Confidence 68889999999999999999999999987642 2222344666668888776544
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=90.97 E-value=0.028 Score=50.42 Aligned_cols=33 Identities=12% Similarity=0.051 Sum_probs=26.3
Q ss_pred eeEEeeeccccCCCCCChhhHHHHHHHHhhhCCccc
Q psy2206 96 TCLNLASYNYLGFGENTGLCTERSKESVKQSGCALC 131 (430)
Q Consensus 96 ~~lnl~SyNYLGfa~~~~~~~~a~~~al~~yG~gs~ 131 (430)
+.|||+|+||+|. ||++++|.+++...++.+.+
T Consensus 3 ~~~~f~s~n~~g~---~P~v~~A~~~a~~~~~~~~~ 35 (345)
T d1v72a1 3 PALGFSSDNIAGA---SPEVAQALVKHSSGQAGPYG 35 (345)
T ss_dssp CCCBCSCGGGCCC---CHHHHHHHHHTTSSCCCSTT
T ss_pred CCcCcCCCCCCCC---CHHHHHHHHHHhccCccccC
Confidence 5799999999996 68999998887765555443
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=83.21 E-value=0.7 Score=45.00 Aligned_cols=81 Identities=20% Similarity=0.238 Sum_probs=54.0
Q ss_pred CceEEEEEcCccCCCCcccCHHHHHHHHHhcCcEEEEeccccccccCCCCCccceecCCCCCCccEEEeCccchhcc---
Q psy2206 295 WRKILIVVEGIFSMDGSIVRLPEIVRLKNKYKAYLYVDEAHSIGALGPTGRGVTEYFGIDPREVDILMGTYTKSFGS--- 371 (430)
Q Consensus 295 ~~~~lIi~E~v~sm~G~i~~L~~I~~La~~y~~~LivDEAh~~G~lG~~GrG~~e~~g~~~~~~dIv~~TlSKa~G~--- 371 (430)
++++.|++..+ |..|.+.++.+|.+++++.|+++|+| +--.. ++- .-....+ .+||++++ +|.||.
T Consensus 195 ~~~Aavmi~~P-nt~G~~ed~~~i~~~~h~~G~l~~~~-ad~~a-l~~--l~~Pg~~-----GaDi~~g~-~q~fg~p~g 263 (437)
T d1wyua1 195 EEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAV-ADPLS-LGV--LKPPGAY-----GADIAVGD-GQSLGLPMG 263 (437)
T ss_dssp TTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEE-CCTTG-GGT--BCCHHHH-----TCSEEEEE-CTTTTCCCG
T ss_pred cceeEEEEccc-cccccccchHHHHHHhhhccceEEee-echhh-hhc--ccccccc-----ccceEeec-cceeccccC
Confidence 35667777777 45799999999999999999977765 43221 220 0011223 35899999 898863
Q ss_pred ---cc-ceeecCHHHHHHH
Q psy2206 372 ---MG-GYVAGSKSTIDYI 386 (430)
Q Consensus 372 ---~G-G~v~gs~~li~~l 386 (430)
+| |+++++++++..+
T Consensus 264 ~GGP~~G~~a~~~~l~r~l 282 (437)
T d1wyua1 264 FGGPHFGFLATKKAFVRQL 282 (437)
T ss_dssp GGCSCCEEEEECGGGGGGC
T ss_pred CCcCccccccccchhhccc
Confidence 22 7888887765443
|