Psyllid ID: psy2207

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-----
Protein Sequence
MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSNFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS
Secondary Structure (PSIPRED)
cEEEcccccccccEEEEEEccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccEEEEEEEcccEEEEEcccccccccccccccccEEEEcccccccccEEEEEEcccccEEEEcccHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEEcccccccccEEEEEEEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHcHHccccccccccccccccccccccEcccHHHccEccccccEcccccccEEccccccEEcHHHcccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccHHHHHHHccccccccEEEEEEcccEEEEEEcccccccHcccccccEEEcccccccccccEEEEEEccEEEEEEEcccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mkvclpqtedynnEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRrsltqssipelnlgkvaplwipdsrvsmcqRCTSVFTVTFRrhhcracgkvvcgpcsdylapleykkfrnfrvCEECYHYLVQEFDDEDSNMFERVKAVAnvednhqvtNMMDIIRSNFKemgtagrrkpskkyrkYVPQRLIEvtandsgsqhsgwlhkksgrnwKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLkhqgqdplvfgadnEQSYERWMKAMREATTLS
Flexible Loop (DISEMBL)
mkvclpqtedynnefsVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTqssipelnlgkvAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVanvednhqvtnmMDIIRSNFKemgtagrrkpskkyrkyVPQRLIEvtandsgsqhsgwlhkksgrnwkRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS
Low Complexity Region (SEG)
MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSNFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS
Disordered region (IsUnstruct)
*********DYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIR********************YVPQRLIEV**********GWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGA********************
Disordered Region (DISOPRED)
*KVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAI*********************************IPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDN*********************RRKPSKK***********************************YWFVLKDQVMYKYKASEDIKALLSIPVLGYEL***********VFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL*
Disordered Region (DISEMBL)
MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSNFKEM************RKYVPQRLIEVTA**********LHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS
Disordered Region (DISPRO)
*KVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLS***************NLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQE****************************************************************DSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSNFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	305	2.2.26 [Sep-21-2011]
Q69ZL1	1399	FYVE, RhoGEF and PH domai	yes	N/A	0.940	0.205	0.401	1e-57
Q6ZV73	1430	FYVE, RhoGEF and PH domai	yes	N/A	0.940	0.200	0.393	4e-56
Q6ZNL6	1462	FYVE, RhoGEF and PH domai	no	N/A	0.947	0.197	0.332	2e-36
Q80UZ0	1219	FYVE, RhoGEF and PH domai	no	N/A	0.970	0.242	0.329	3e-34
Q96M96	766	FYVE, RhoGEF and PH domai	no	N/A	0.845	0.336	0.303	2e-33
Q91ZT5	766	FYVE, RhoGEF and PH domai	no	N/A	0.842	0.335	0.305	3e-33
O88387	766	FYVE, RhoGEF and PH domai	no	N/A	0.842	0.335	0.311	1e-32
P98174	961	FYVE, RhoGEF and PH domai	no	N/A	0.813	0.258	0.302	3e-29
P52734	960	FYVE, RhoGEF and PH domai	no	N/A	0.796	0.253	0.307	4e-29
Q7Z6J4	655	FYVE, RhoGEF and PH domai	no	N/A	0.842	0.392	0.323	5e-29

>sp|Q69ZL1|FGD6_MOUSE FYVE, RhoGEF and PH domain-containing protein 6 OS=Mus musculus GN=Fgd6 PE=1 SV=2

 Score =  223 bits (568), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 124/309 (40%), Positives = 179/309 (57%), Gaps = 22/309 (7%)

Query: 1    MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
            MKV  P  E Y NE  + ++ RSF L A SA ER +W++AI ++I+E  +  ++F   RS
Sbjct: 1108 MKVRKPTQEAYQNELKIESVERSFILSASSAAERDDWLEAISSSIEEYAKKRITFCPSRS 1167

Query: 61   LTQSS--IPELN-LGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDY 117
            L + S    E++ LG  AP+WIPD+R +MC  CTS FT+T+RRHHCRACGK+VC  CS  
Sbjct: 1168 LDEDSERKEEVSPLGAKAPIWIPDTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSSN 1227

Query: 118  LAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSNF 177
               L+Y K +  RVCE C+    QE    D  +  RV +  N              +S  
Sbjct: 1228 KYGLDYLKGQLARVCEHCF----QELQKLDHQLSPRVGSPGN-------------HKSPS 1270

Query: 178  KEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQV 235
              + +     PS + +K +P  L EV+AN   S  SG+L++  G  + WK  WFV+K++V
Sbjct: 1271 SALSSVLHSIPSGRKQKKIPAALKEVSANTEDSTMSGYLYRSKGSKKPWKHLWFVIKNKV 1330

Query: 236  MYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWM 295
            +Y Y ASED+ AL S P+LG+ +  + ++++   VFQL H+G    VF AD+  S +RW+
Sbjct: 1331 LYTYAASEDVAALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWI 1390

Query: 296  KAMREATTL 304
             A +E T L
Sbjct: 1391 DAFQEGTVL 1399

May activate CDC42, a member of the Ras-like family of Rho- and Rac proteins, by exchanging bound GDP for free GTP. May play a role in regulating the actin cytoskeleton and cell shape.
Mus musculus (taxid: 10090)

>sp|Q6ZV73|FGD6_HUMAN FYVE, RhoGEF and PH domain-containing protein 6 OS=Homo sapiens GN=FGD6 PE=1 SV=2

 Score =  218 bits (555), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 122/310 (39%), Positives = 179/310 (57%), Gaps = 23/310 (7%)

Query: 1    MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
            MKV  P  E Y NE  + ++ RSF L A SA ER EW++AI  AI+E  +  ++F   RS
Sbjct: 1138 MKVRKPTQEAYQNELKIESVERSFILSASSATERDEWLEAISRAIEEYAKKRITFCPSRS 1197

Query: 61   LTQSSIPELN----LGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSD 116
            L ++          LG  AP+WIPD+R +MC  CTS FT+T+RRHHCRACGK+VC  CS 
Sbjct: 1198 LDEADSENKEEVSPLGSKAPIWIPDTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSS 1257

Query: 117  YLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSN 176
                L+Y K +  RVCE C+  L Q+ D + S    R+ +      NH         +S 
Sbjct: 1258 NKYGLDYLKNQPARVCEHCFQEL-QKLDHQHS---PRIGSPG----NH---------KSP 1300

Query: 177  FKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQ 234
               + +     PS + +K +P  L EV+AN   S  SG+L++  G  + WK +WFV+K++
Sbjct: 1301 SSALSSVLHSIPSGRKQKKIPAALKEVSANTEDSSMSGYLYRSKGNKKPWKHFWFVIKNK 1360

Query: 235  VMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERW 294
            V+Y Y ASED+ AL S P+LG+ +  + ++++   VFQL H+     VF A++  S ++W
Sbjct: 1361 VLYTYAASEDVAALESQPLLGFTVIQVKDENSESKVFQLLHKNMLFYVFKAEDAHSAQKW 1420

Query: 295  MKAMREATTL 304
            ++A +E T L
Sbjct: 1421 IEAFQEGTIL 1430

May activate CDC42, a member of the Ras-like family of Rho- and Rac proteins, by exchanging bound GDP for free GTP. May play a role in regulating the actin cytoskeleton and cell shape.

Homo sapiens (taxid: 9606)

>sp|Q6ZNL6|FGD5_HUMAN FYVE, RhoGEF and PH domain-containing protein 5 OS=Homo sapiens GN=FGD5 PE=1 SV=3

 Score =  153 bits (386), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/316 (33%), Positives = 156/316 (49%), Gaps = 27/316 (8%)

Query: 1    MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKEN--EQHLLSFLNR 58
            MKV  P  E       +        L A S  ER EW   +  A+ E+   Q L +F + 
Sbjct: 1162 MKVSRPVMEKVPYALKIETSESCLMLSASSCAERDEWYGCLSRALPEDYKAQALAAFHHS 1221

Query: 59   RSLTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYL 118
              + +     ++LG+  P  +P + V MC  C   F++T RRHHC ACGK+VC  CS   
Sbjct: 1222 VEIRERL--GVSLGERPPTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNK 1279

Query: 119  APLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSNFK 178
             PL+Y K R  +VC+ C+  L +           R +AV  +     V+    +    F 
Sbjct: 1280 YPLKYLKDRMAKVCDGCFGELKK-----------RGRAVPGLMRERPVSMSFPLSSPRFS 1328

Query: 179  EMGTAGRR-----KPSK-KYRKYVPQRLIEVTANDSGSQHSGWLH--KKSGRNWKRYWFV 230
              G+A         PS  K +K VP  L EV A+  GS  SG+L   K+  R+WK+ WFV
Sbjct: 1329 --GSAFSSVFQSINPSTFKKQKKVPSALTEVAASGEGSAISGYLSRCKRGKRHWKKLWFV 1386

Query: 231  LKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKY--VFQLKHQGQDPLVFGADNE 288
            +K +V+Y Y ASED  AL S+P+LG+ +    E+ + +   +F L H+      F A++ 
Sbjct: 1387 IKGKVLYTYMASEDKVALESMPLLGFTIAPEKEEGSSEVGPIFHLYHKKTLFYSFKAEDT 1446

Query: 289  QSYERWMKAMREATTL 304
             S +RW++AM +A+ L
Sbjct: 1447 NSAQRWIEAMEDASVL 1462

May activate CDC42, a member of the Ras-like family of Rho- and Rac proteins, by exchanging bound GDP for free GTP. May play a role in regulating the actin cytoskeleton and cell shape.

Homo sapiens (taxid: 9606)

>sp|Q80UZ0|FGD5_MOUSE FYVE, RhoGEF and PH domain-containing protein 5 OS=Mus musculus GN=Fgd5 PE=1 SV=2

 Score =  145 bits (367), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 156/310 (50%), Gaps = 14/310 (4%)

Query: 1    MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKEN--EQHLLSFLNR 58
            MKV  P  +       +       TL A S  ER EW   +  A+ E+   Q L +F + 
Sbjct: 918  MKVSRPVMDKVPYALKIETPESCLTLSASSCAERDEWHYCLSRALPEDYKTQALAAFHHS 977

Query: 59   RSLTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYL 118
              + +     ++LG+  P  +P +   MC  C   F++T RRHHC ACGK+VC  CS   
Sbjct: 978  VEIRERL--GISLGERLPTLVPVTHAMMCMNCGCDFSLTVRRHHCHACGKIVCRNCSRNK 1035

Query: 119  APLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSNFK 178
             PL+  K R  +VC+ C+  L         +M ER  +++    +    +    + S F+
Sbjct: 1036 YPLKCLKNRMAKVCDGCFRELKLRNGPVPGSMRERPVSMS-FPLSSSRFSSGSALSSVFQ 1094

Query: 179  EMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHK-KSG-RNWKRYWFVLKDQVM 236
             +  +  +K     +K VP  L EV A+  GS  SG+L + KSG R WK+ W V+K +V+
Sbjct: 1095 SISPSTFKK-----QKKVPSALSEVAASGEGSAISGYLSRCKSGKRRWKKLWLVIKGKVL 1149

Query: 237  YKYKASEDIKALLSIPVLGYELEALNEQDNFKY--VFQLKHQGQDPLVFGADNEQSYERW 294
            Y Y ASED  A+ SIP+LG+ +    E+ + +   VF L H+      F A++  S +RW
Sbjct: 1150 YTYLASEDKVAMESIPLLGFTIAPEKEEGSSEVGPVFHLYHKKTLFYSFKAEDSNSAQRW 1209

Query: 295  MKAMREATTL 304
            M+AM +A+ L
Sbjct: 1210 MEAMEDASVL 1219

May activate CDC42, a member of the Ras-like family of Rho- and Rac proteins, by exchanging bound GDP for free GTP. May play a role in regulating the actin cytoskeleton and cell shape.

Mus musculus (taxid: 10090)

>sp|Q96M96|FGD4_HUMAN FYVE, RhoGEF and PH domain-containing protein 4 OS=Homo sapiens GN=FGD4 PE=1 SV=2

 Score =  143 bits (360), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 146/310 (47%), Gaps = 52/310 (16%)

Query: 1   MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLN--- 57
           MK+   Q E+Y + F V    R+  L+A SA ++ EWI A+Q  I    Q   +F N   
Sbjct: 476 MKIVETQNEEYPHTFQVSGKERTLELQASSAQDKEEWIKALQETIDAFHQRHETFRNAIA 535

Query: 58  RRSLTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVF-TVTFRRHHCRACGKVVCGPCSD 116
           + +   S +    LGK AP WI D+ V+MC +C   F  +T RRHHCRACG VVC  CSD
Sbjct: 536 KDNDIHSEVSTAELGKRAPRWIRDNEVTMCMKCKEPFNALTRRRHHCRACGYVVCWKCSD 595

Query: 117 YLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSN 176
           Y A LEY   +  +VC++CY  +    D E+    ++ K +  +E               
Sbjct: 596 YKAQLEYDGGKLSKVCKDCYQIISGFTDSEE----KKRKGILEIES-------------- 637

Query: 177 FKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQ-- 234
                                    EV+ N        ++ K   + W++ W V+  Q  
Sbjct: 638 ------------------------AEVSGNSVVCSFLQYMEK--SKPWQKAWCVIPKQDP 671

Query: 235 -VMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYER 293
            V+Y Y A +D++A  +IP+LGY ++ +    +  + F+L  Q +    F AD+E+  ++
Sbjct: 672 LVLYMYGAPQDVRAQATIPLLGYVVDEMPRSADLPHSFKLT-QSKSVHSFAADSEELKQK 730

Query: 294 WMKAMREATT 303
           W+K +  A T
Sbjct: 731 WLKVILLAVT 740

Activates CDC42, a member of the Ras-like family of Rho-and Rac proteins, by exchanging bound GDP for free GTP. Plays a role in regulating the actin cytoskeleton and cell shape. Activates MAPK8.

Homo sapiens (taxid: 9606)

>sp|Q91ZT5|FGD4_MOUSE FYVE, RhoGEF and PH domain-containing protein 4 OS=Mus musculus GN=Fgd4 PE=1 SV=1

 Score =  142 bits (358), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/311 (30%), Positives = 145/311 (46%), Gaps = 54/311 (17%)

Query: 1   MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
           MK+     E+Y + F +    R+  L+A S  ++ EWI A+Q +I    Q   +F N  +
Sbjct: 476 MKIVETHNEEYPHTFQISGKERTLELQASSEQDKEEWIKALQESIDAFHQRHETFRNAIA 535

Query: 61  LTQSSIP----ELNLGKVAPLWIPDSRVSMCQRCTSVF-TVTFRRHHCRACGKVVCGPCS 115
             ++ IP       LGK AP WI D+ V+MC +C   F  +T RRHHCRACG VVC  CS
Sbjct: 536 -KENDIPLEVSTAELGKRAPRWIRDNEVTMCMKCKESFNALTRRRHHCRACGHVVCWKCS 594

Query: 116 DYLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRS 175
           DY A LEY   R  +VC++CY  +    D E+                            
Sbjct: 595 DYKAQLEYDGGRLNKVCKDCYQIISGFTDSEE---------------------------- 626

Query: 176 NFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQ- 234
                         KK R  +     EV+ N        ++ K   + W++ W V+  Q 
Sbjct: 627 --------------KKRRGILEIESAEVSGNSEVCSFLQYMEK--SKPWQKIWCVIPKQD 670

Query: 235 --VMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYE 292
             V+Y Y A +D++A  +IP+LGY ++ + +  +  + F+L  Q +    F ADNE+  +
Sbjct: 671 PLVLYMYGAPQDVRAQATIPLLGYVVDDMPKSADLPHSFKLT-QSKSVHSFAADNEELKQ 729

Query: 293 RWMKAMREATT 303
           +W+K +  A T
Sbjct: 730 KWLKIILLAVT 740

Activates CDC42, a member of the Ras-like family of Rho-and Rac proteins, by exchanging bound GDP for free GTP. Activates MAPK8 (By similarity). Plays a role in regulating the actin cytoskeleton and cell shape. Promotes the formation of lamellipodia.

Mus musculus (taxid: 10090)

>sp|O88387|FGD4_RAT FYVE, RhoGEF and PH domain-containing protein 4 OS=Rattus norvegicus GN=Fgd4 PE=1 SV=1

 Score =  140 bits (353), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 145/311 (46%), Gaps = 54/311 (17%)

Query: 1   MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
           MK+     E+Y + F V    R+  L+A S  ++ EWI A+Q +I    Q   +F N  +
Sbjct: 476 MKIVETHNEEYPHTFQVSGKERTLELQASSEQDKEEWIKALQESIDAFHQRHETFRNAIA 535

Query: 61  LTQSSIP----ELNLGKVAPLWIPDSRVSMCQRCTSVF-TVTFRRHHCRACGKVVCGPCS 115
             ++ IP       LGK AP WI D+ V+MC +C   F  +T RRHHCRACG VVC  CS
Sbjct: 536 -KENDIPLEVSTAELGKRAPRWIRDNEVTMCMKCKESFNALTRRRHHCRACGHVVCWKCS 594

Query: 116 DYLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRS 175
           DY A LEY   R  +VC++CY                                    I S
Sbjct: 595 DYKAQLEYDGGRLNKVCKDCYQ-----------------------------------IMS 619

Query: 176 NFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQ- 234
            F E          KK R  +     EV+ N        ++ K   + W++ W V+  Q 
Sbjct: 620 GFAE-------SEEKKRRGILEIESAEVSGNSEVCSFLQYMEK--SKPWQKIWCVIPKQD 670

Query: 235 --VMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYE 292
             V+Y Y A +D++A  +IP+LGY ++ + +  +  + F+L  Q +    F AD+E+  +
Sbjct: 671 PLVLYMYGAPQDVRAQATIPLLGYIVDDMPKSADLPHSFKLT-QSKSVHSFAADSEELKQ 729

Query: 293 RWMKAMREATT 303
           +W+K +  A T
Sbjct: 730 KWLKIILLAVT 740

Activates CDC42, a member of the Ras-like family of Rho-and Rac proteins, by exchanging bound GDP for free GTP. Plays a role in regulating the actin cytoskeleton and cell shape. Activates MAPK8.

Rattus norvegicus (taxid: 10116)

>sp|P98174|FGD1_HUMAN FYVE, RhoGEF and PH domain-containing protein 1 OS=Homo sapiens GN=FGD1 PE=1 SV=2

 Score =  129 bits (324), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 144/301 (47%), Gaps = 53/301 (17%)

Query: 15  FSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSF-----LNRRSL-TQSSIPE 68
           F V    RS  L+AR+  E+ +W+ AI + + ++EQ L +F      NR    T  + P 
Sbjct: 658 FLVSGKQRSLELQARTEEEKKDWVQAINSTLLKHEQTLETFKLLNSTNREDEDTPPNSPN 717

Query: 69  LNLGKVAPLWIPDSRVSMCQRCTSVF-TVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFR 127
           ++LGK AP  I +  V+MC RC   F ++T RRHHC+ACG VVCG CS++ A L Y   R
Sbjct: 718 VDLGKRAPTPIREKEVTMCMRCQEPFNSITKRRHHCKACGHVVCGKCSEFRARLVYDNNR 777

Query: 128 NFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSNFKEMGTAGRRK 187
           + RVC +CY  L                        H V         +           
Sbjct: 778 SNRVCTDCYVAL------------------------HGVPGSSPACSQH----------- 802

Query: 188 PSKKYRKYVPQRLIEVTANDSGSQHSGWLH--KKSGRNWKRYWFVLKDQ---VMYKYKAS 242
            + + R+ + ++   V A +  S    +LH  +K G+ W + WFV+ +    V+Y Y A 
Sbjct: 803 -TPQRRRSILEKQASVAAEN--SVICSFLHYMEKGGKGWHKAWFVVPENEPLVLYIYGAP 859

Query: 243 EDIKALLSIPVLGYELEA--LNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMRE 300
           +D+KA  S+P++G+E+      E+ + ++VF++  Q      F  + E+   RWM  +  
Sbjct: 860 QDVKAQRSLPLIGFEVGPPEAGERPDRRHVFKIT-QSHLSWYFSPETEELQRRWMAVLGR 918

Query: 301 A 301
           A
Sbjct: 919 A 919

Activates CDC42, a member of the Ras-like family of Rho-and Rac proteins, by exchanging bound GDP for free GTP. Plays a role in regulating the actin cytoskeleton and cell shape.

Homo sapiens (taxid: 9606)

>sp|P52734|FGD1_MOUSE FYVE, RhoGEF and PH domain-containing protein 1 OS=Mus musculus GN=Fgd1 PE=1 SV=2

 Score =  129 bits (323), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 146/306 (47%), Gaps = 63/306 (20%)

Query: 15  FSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSF--LNRRSL----TQSSIPE 68
           F V    RS  L+AR+  E+ +W+ AI + + ++EQ L +F  LN  +     T  + P 
Sbjct: 657 FLVSGKQRSLELQARTEEEKKDWVQAINSTLLKHEQTLETFKLLNSTNRDDEDTPPNSPN 716

Query: 69  LNLGKVAPLWIPDSRVSMCQRCTSVF-TVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFR 127
           ++LGK AP  I +  V+MC RC   F ++T RRHHC+ACG VVCG CS++ A L Y   R
Sbjct: 717 VDLGKRAPTPIREKEVTMCMRCQEPFNSITKRRHHCKACGHVVCGKCSEFRARLIYDNNR 776

Query: 128 NFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSNFKEMGTAGRRK 187
           + RVC +CY  L                                         G  G   
Sbjct: 777 SNRVCTDCYVAL----------------------------------------HGAPGS-- 794

Query: 188 PSKKYRKYVPQR---LIEVTANDSG--SQHSGWLH--KKSGRNWKRYWFVLKDQ---VMY 237
            S    ++ PQR   ++E  A+ +   S    +LH  +K G+ W + WFV+ +    V+Y
Sbjct: 795 -SPACSQHTPQRRRSILEKQASVAAENSVICSFLHYMEKGGKGWHKAWFVVPENEPLVLY 853

Query: 238 KYKASEDIKALLSIPVLGYELEA--LNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWM 295
            Y A +D+KA  S+P++G+E+      E+ + ++VF++  Q      F  + E+   RWM
Sbjct: 854 IYGAPQDVKAQRSLPLIGFEVGPPEAGERPDRRHVFKIT-QSHLSWYFSPETEELQRRWM 912

Query: 296 KAMREA 301
             +  A
Sbjct: 913 AVLGRA 918

Activates CDC42, a member of the Ras-like family of Rho-and Rac proteins, by exchanging bound GDP for free GTP. Plays a role in regulating the actin cytoskeleton and cell shape.

Mus musculus (taxid: 10090)

>sp|Q7Z6J4|FGD2_HUMAN FYVE, RhoGEF and PH domain-containing protein 2 OS=Homo sapiens GN=FGD2 PE=2 SV=1

 Score =  128 bits (322), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 102/315 (32%), Positives = 138/315 (43%), Gaps = 58/315 (18%)

Query: 1   MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
           MKV      ++ + F V    R+  L+ARS  E + W+ A Q AI + E+   +F     
Sbjct: 373 MKVRELMDAEFPHSFLVSGKQRTLELQARSQEEMISWMQAFQAAIDQIEKRNETFKAAAQ 432

Query: 61  LTQSSIPELNL-----GKVAPLWIPDSRVSMCQRCTSVF-TVTFRRHHCRACGKVVCGPC 114
             +  I E  L     G  AP W+ D  V+MC RC   F  +T RRHHCRACG VVC  C
Sbjct: 433 GPEGDIQEQELQSEELGLRAPQWVRDKMVTMCMRCQEPFNALTRRRHHCRACGYVVCARC 492

Query: 115 SDYLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIR 174
           SDY A L+Y   R  RVC  CY +L         N+    K     ED           R
Sbjct: 493 SDYRAELKYDDNRPNRVCLHCYAFLT-------GNVLPEAK-----EDK----------R 530

Query: 175 SNFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLH---KKSGRNWKRYWFVL 231
               E G+                     +A    S    +L     K G++  R W V+
Sbjct: 531 RGILEKGS---------------------SATPDQSLMCSFLQLIGDKWGKSGPRGWCVI 569

Query: 232 KDQ---VMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNE 288
                 V+Y Y A +D++A  SIP+LGY++    + D    VFQL+  GQ    F A+ E
Sbjct: 570 PRDDPLVLYVYAAPQDMRAHTSIPLLGYQVTVGPQGD--PRVFQLQQSGQL-YTFKAETE 626

Query: 289 QSYERWMKAMREATT 303
           +   RW+KAM  A +
Sbjct: 627 ELKGRWVKAMERAAS 641

Activates CDC42, a member of the Ras-like family of Rho-and Rac proteins, by exchanging bound GDP for free GTP. Activates JNK1 via CDC42 but not RAC1. Binds to phosphatidylinositol 4,5-bisphosphate, phosphatidylinositol 3,4,5-trisphosphate, phosphatidylinositol 5-monophosphate, phosphatidylinositol 4-monophosphate and phosphatidylinositol 3-monophosphate.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
328700485	862	PREDICTED: FYVE, RhoGEF and PH domain-co	0.967	0.342	0.517	8e-84
321456107	1317	hypothetical protein DAPPUDRAFT_331275 [	0.993	0.230	0.430	9e-64
242010240	1001	FYVE, RhoGEF and PH domain-containing pr	0.865	0.263	0.428	1e-61
427780591	1673	hypothetical protein [Rhipicephalus pulc	0.898	0.163	0.420	4e-59
427780589	1700	hypothetical protein [Rhipicephalus pulc	0.898	0.161	0.420	5e-59
427780127	1097	hypothetical protein [Rhipicephalus pulc	0.898	0.249	0.420	5e-59
443695700	482	hypothetical protein CAPTEDRAFT_180983 [	0.957	0.605	0.402	5e-57
117616870	431	ethanol decreased 4 [synthetic construct	0.940	0.665	0.404	5e-56
26382536	465	unnamed protein product [Mus musculus]	0.940	0.617	0.404	5e-56
114325429	943	Fgd6 protein [Mus musculus]	0.940	0.304	0.401	6e-56

>gi|328700485|ref|XP_001945183.2| PREDICTED: FYVE, RhoGEF and PH domain-containing protein 6-like [Acyrthosiphon pisum]

 Score =  316 bits (809), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 161/311 (51%), Positives = 220/311 (70%), Gaps = 16/311 (5%)

Query: 1   MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
           MKV LP T++  NEFS+I I+RSFTLRA+SA E  EW++ ++ AI+E+    LSFLN + 
Sbjct: 560 MKVFLPITDNCLNEFSIITITRSFTLRAKSAVELKEWVNILEKAIREHTNKQLSFLNMKF 619

Query: 61  LTQSSIPE-LNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLA 119
           ++++   E L LG  AP+WI D RV+MCQ C S FTVTFRRHHCRACGKVVC  CS+  A
Sbjct: 620 VSKNIGREPLQLGYEAPIWIQDCRVTMCQSCASEFTVTFRRHHCRACGKVVCSSCSENKA 679

Query: 120 PLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSNFKE 179
           PL Y KF++ RVC++CY YL++EF+D+   + E  ++ +N   + ++  M+D ++++FK+
Sbjct: 680 PLRYMKFQSARVCDDCYDYLLKEFEDK---ILEMRQSSSN--SDLEILKMVDTVKNSFKK 734

Query: 180 MGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGR-NWKRYWFVLKDQVMYK 238
            G       SKK  KYVPQRL EV ANDSGSQ SGWL+++  R +WKR+WFVLK+QV+Y 
Sbjct: 735 SGVWS----SKKLVKYVPQRLKEVMANDSGSQMSGWLYRREKRKSWKRFWFVLKEQVLYM 790

Query: 239 YKASEDIKALLSIPVLGYELEALNEQDNFKY-----VFQLKHQGQDPLVFGADNEQSYER 293
           YKASED+ AL +IPVLGY ++   E  N++      VFQL H GQ+PL+F +D EQ  +R
Sbjct: 791 YKASEDVVALNTIPVLGYSVQTFPEGTNYEEFDSSCVFQLAHAGQNPLIFCSDTEQLAKR 850

Query: 294 WMKAMREATTL 304
           W+  + EAT L
Sbjct: 851 WINTLNEATKL 861

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321456107|gb|EFX67223.1| hypothetical protein DAPPUDRAFT_331275 [Daphnia pulex]

 Score =  249 bits (637), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 143/332 (43%), Positives = 206/332 (62%), Gaps = 29/332 (8%)

Query: 1    MKVCLPQ---TEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLN 57
            M+V LP    TE+  NEF+VI+ +RSFTL A S   R EW++ +  AI E +    +F +
Sbjct: 987  MEVHLPAVSATEENANEFNVISTARSFTLAASSMQVRNEWMNVLSEAIAELQSKQQTFPS 1046

Query: 58   RRSLTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDY 117
            +  LT+SS   L LG+ AP+WIPDSRV+MCQ CT+ F++TFRRHHCRACGKVVC  CS  
Sbjct: 1047 K-ILTESSESRLRLGQQAPVWIPDSRVTMCQLCTAAFSITFRRHHCRACGKVVCRSCSSR 1105

Query: 118  LAPLEYKKFRNFRVCEECYHYL-------VQEFDDED--SNMFER--VKAVANVED---- 162
             A LEY KFR+ RVC++C+  +       ++E  D    S++ E     ++ NV      
Sbjct: 1106 KAGLEYLKFRSARVCDDCFDEINGQEGSVIEEGMDSSNCSSLIETDLSASLVNVPPVCFV 1165

Query: 163  ---NHQVTN---MMDIIRSNFKEMGTAGR--RKPSKKYRKYVPQRLIEVTANDSGSQHSG 214
               N +V +     D +  +  + G   +  R+  +K R+Y+P RL+EV AND+ SQ SG
Sbjct: 1166 HAFNDEVGSRRPSSDPVSQSTSQAGLRAQHVRRDFRKERRYIPPRLMEVPANDAESQISG 1225

Query: 215  WLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE--QDNFKYVFQ 272
            +L ++  R+WK+ WFVLKD+V+Y YKA ED+ AL +IPVLGYE++   E  ++  +  FQ
Sbjct: 1226 YLSRRIRRSWKKNWFVLKDKVLYIYKAPEDVVALDTIPVLGYEVQTFQEVVEEIEQNEFQ 1285

Query: 273  LKHQGQDPLVFGADNEQSYERWMKAMREATTL 304
            L H  Q P+VF A+N    ++W++A+  AT L
Sbjct: 1286 LFHPKQSPIVFQAENAVLTKKWIEALSSATIL 1317

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010240|ref|XP_002425878.1| FYVE, RhoGEF and PH domain-containing protein, putative [Pediculus humanus corporis] gi|212509844|gb|EEB13140.1| FYVE, RhoGEF and PH domain-containing protein, putative [Pediculus humanus corporis]

 Score =  243 bits (619), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 128/299 (42%), Positives = 182/299 (60%), Gaps = 35/299 (11%)

Query: 1   MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
           MKVCL   E Y+N F+V +I RSF L A++ +E  +W++ +  AI+E+ +   +FLN + 
Sbjct: 732 MKVCLNDDEKYSNSFTVHSIKRSFILCAKTESECKDWVEKLHGAIEEHIKKQKTFLNVKI 791

Query: 61  LTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAP 120
               S     LGK AP+W+PD +V+MCQ CT+ FT  FRRHHCR CGKVVC  C    AP
Sbjct: 792 EMSDS---FKLGKEAPVWVPDGKVTMCQICTAEFTALFRRHHCRGCGKVVCRNCGSNQAP 848

Query: 121 LEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSNFKEM 180
           L+Y  F++ RVC++C+  L++                        V N    I+S F + 
Sbjct: 849 LQYTNFKSDRVCDQCFDLLLK-----------------------GVQNEYLYIKSKFVKY 885

Query: 181 GTAGR-RKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKY 239
            +AG  +KP     KY+P RL EV+ANDS S  SGWL++KS ++WK +W+VLKD V+Y Y
Sbjct: 886 SSAGNGKKP-----KYIPPRLKEVSANDSESSMSGWLYRKSRKSWKMFWYVLKDHVLYVY 940

Query: 240 KASEDIKALLSIPVLGYELEALN---EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWM 295
           KASED+ AL +IPVLGYE+E      E+ +   +F L H  Q PL+F A+++ S +R++
Sbjct: 941 KASEDVLALETIPVLGYEVERAKVNFEEIDKNLIFSLVHSSQMPLIFRAESQTSADRYL 999

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427780591|gb|JAA55747.1| hypothetical protein [Rhipicephalus pulchellus]

 Score =  234 bits (597), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 130/309 (42%), Positives = 170/309 (55%), Gaps = 35/309 (11%)

Query: 1    MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
            MKV +P  +DY NEFSV    RSF L A S  ER EWI A+  AI++N     SF   + 
Sbjct: 1396 MKVMVPPQQDYQNEFSVYTTKRSFILSASSPEEREEWISALTKAIEDNIHRKSSFHVLKK 1455

Query: 61   LTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAP 120
                S     LG+ AP+WIPD RV+MCQ CTS FT T RRHHCRACGKVVC  CS +  P
Sbjct: 1456 EGSQSSSSSELGREAPVWIPDQRVTMCQLCTSGFTFTHRRHHCRACGKVVCSTCSSHRLP 1515

Query: 121  LEY-KKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSNFKE 179
            L Y    +  R+C++C+  L               ++     D+ +V    D  +   K+
Sbjct: 1516 LPYLGSDKPVRICDDCFRSL---------------QSGGEPRDHPEVDGDGDQGQGRRKK 1560

Query: 180  MGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKY 239
             G                  L EV AND GS  SG+LH  S + WKR WFV+K+ V+Y Y
Sbjct: 1561 HGGV----------------LQEVAANDLGSSMSGYLHHWSKKAWKRQWFVIKEHVLYVY 1604

Query: 240  KASEDIKALLSIPVLGYELEALN---EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMK 296
            KASED+ AL ++P+LGY++ A++   E+   + +F L+H G DPL+F AD      RW +
Sbjct: 1605 KASEDVAALRTVPLLGYQVGAVSKGFEEVPREQLFHLEHTGLDPLIFYADTSDLATRWRE 1664

Query: 297  AMREATTLS 305
            AM EAT LS
Sbjct: 1665 AMEEATKLS 1673

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427780589|gb|JAA55746.1| hypothetical protein [Rhipicephalus pulchellus]

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 130/309 (42%), Positives = 170/309 (55%), Gaps = 35/309 (11%)

Query: 1    MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
            MKV +P  +DY NEFSV    RSF L A S  ER EWI A+  AI++N     SF   + 
Sbjct: 1423 MKVMVPPQQDYQNEFSVYTTKRSFILSASSPEEREEWISALTKAIEDNIHRKSSFHVLKK 1482

Query: 61   LTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAP 120
                S     LG+ AP+WIPD RV+MCQ CTS FT T RRHHCRACGKVVC  CS +  P
Sbjct: 1483 EGSQSSSSSELGREAPVWIPDQRVTMCQLCTSGFTFTHRRHHCRACGKVVCSTCSSHRLP 1542

Query: 121  LEY-KKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSNFKE 179
            L Y    +  R+C++C+  L               ++     D+ +V    D  +   K+
Sbjct: 1543 LPYLGSDKPVRICDDCFRSL---------------QSGGEPRDHPEVDGDGDQGQGRRKK 1587

Query: 180  MGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKY 239
             G                  L EV AND GS  SG+LH  S + WKR WFV+K+ V+Y Y
Sbjct: 1588 HGGV----------------LQEVAANDLGSSMSGYLHHWSKKAWKRQWFVIKEHVLYVY 1631

Query: 240  KASEDIKALLSIPVLGYELEALN---EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMK 296
            KASED+ AL ++P+LGY++ A++   E+   + +F L+H G DPL+F AD      RW +
Sbjct: 1632 KASEDVAALRTVPLLGYQVGAVSKGFEEVPREQLFHLEHTGLDPLIFYADTSDLATRWRE 1691

Query: 297  AMREATTLS 305
            AM EAT LS
Sbjct: 1692 AMEEATKLS 1700

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427780127|gb|JAA55515.1| hypothetical protein [Rhipicephalus pulchellus]

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 130/309 (42%), Positives = 170/309 (55%), Gaps = 35/309 (11%)

Query: 1    MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
            MKV +P  +DY NEFSV    RSF L A S  ER EWI A+  AI++N     SF   + 
Sbjct: 820  MKVMVPPQQDYQNEFSVYTTKRSFILSASSPEEREEWISALTKAIEDNIHRKSSFHVLKK 879

Query: 61   LTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAP 120
                S     LG+ AP+WIPD RV+MCQ CTS FT T RRHHCRACGKVVC  CS +  P
Sbjct: 880  EGSQSSSSSELGREAPVWIPDQRVTMCQLCTSGFTFTHRRHHCRACGKVVCSTCSSHRLP 939

Query: 121  LEY-KKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSNFKE 179
            L Y    +  R+C++C+  L               ++     D+ +V    D  +   K+
Sbjct: 940  LPYLGSDKPVRICDDCFRSL---------------QSGGEPRDHPEVDGDGDQGQGRRKK 984

Query: 180  MGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKY 239
             G                  L EV AND GS  SG+LH  S + WKR WFV+K+ V+Y Y
Sbjct: 985  HGGV----------------LQEVAANDLGSSMSGYLHHWSKKAWKRQWFVIKEHVLYVY 1028

Query: 240  KASEDIKALLSIPVLGYELEALN---EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMK 296
            KASED+ AL ++P+LGY++ A++   E+   + +F L+H G DPL+F AD      RW +
Sbjct: 1029 KASEDVAALRTVPLLGYQVGAVSKGFEEVPREQLFHLEHTGLDPLIFYADTSDLATRWRE 1088

Query: 297  AMREATTLS 305
            AM EAT LS
Sbjct: 1089 AMEEATKLS 1097

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443695700|gb|ELT96558.1| hypothetical protein CAPTEDRAFT_180983 [Capitella teleta]

 Score =  227 bits (578), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 128/318 (40%), Positives = 184/318 (57%), Gaps = 26/318 (8%)

Query: 1   MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
           MKV  P  ED+ NEFS+I+  RSFT+ A +++E+ EW+  ++  I EN +   S+ +   
Sbjct: 173 MKVIRPTKEDFQNEFSIISTQRSFTISASTSDEKEEWLSVLEETIAENIRRRSSYTS--- 229

Query: 61  LTQSSIP--------ELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCG 112
            T+ SIP        +  LG  AP+WIPD+RVSMC  CTS FTVTFRRHHCRACGKVVCG
Sbjct: 230 -TKQSIPAIIDIDNIDFKLGTKAPVWIPDARVSMCMTCTSEFTVTFRRHHCRACGKVVCG 288

Query: 113 PCSDYLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMM-- 170
            CSD  APL Y  ++  RVC+EC+  L  E D+   +  + +   +  E    +T     
Sbjct: 289 FCSDCKAPLRYLMYKPARVCQECFDKLSAEVDELSEDCADAISPTS--ETGPSITGSAFS 346

Query: 171 -DIIRSNFK--EMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRY 227
              ++S FK   MG+ G+   SK+     P  L EV+AN   ++ SG+L + + + WK+ 
Sbjct: 347 KSHLKSRFKGIRMGSLGKGIFSKRR----PAVLNEVSANVEDAEMSGYLKQWTKKRWKKM 402

Query: 228 WFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN---EQDNFKYVFQLKHQGQDPLVFG 284
           WFVLK +V+Y YKASED  A  S  +LGYE+   +   +      VF++ H G   L+  
Sbjct: 403 WFVLKGKVLYTYKASEDAAADDSKVLLGYEVRIFSSWFQGIEPSLVFEIIHSGTRSLILR 462

Query: 285 ADNEQSYERWMKAMREAT 302
            ++  S ++W+ A+R AT
Sbjct: 463 TESPLSRDKWISALRNAT 480

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|117616870|gb|ABK42453.1| ethanol decreased 4 [synthetic construct]

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 125/309 (40%), Positives = 180/309 (58%), Gaps = 22/309 (7%)

Query: 1   MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
           MKV  P  E Y NE  + ++ RSF L A SA ER +W++AI ++I+E  +  ++F   RS
Sbjct: 140 MKVRKPTQEAYQNELKIESVERSFILSASSAAERDDWLEAISSSIEEYAKKRITFCPSRS 199

Query: 61  LTQSS--IPELN-LGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDY 117
           L + S    E++ LG  AP+WIPD+R +MC  CTS FT+T+RRHHCRACGK+VC  CS  
Sbjct: 200 LDEDSERKEEVSPLGAKAPIWIPDTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSSN 259

Query: 118 LAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSNF 177
              L+Y K +  RVCE C+    QE    D  +  RV +      NH         +S  
Sbjct: 260 KYGLDYLKGQLARVCEHCF----QELQKLDHQLSPRVGSPG----NH---------KSPS 302

Query: 178 KEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQV 235
             + +     PS + +K +P  L EV+AN   S  SG+L++  G  + WK  WFV+K++V
Sbjct: 303 SALSSVLHSIPSGRKQKKIPAALKEVSANTEDSTMSGYLYRSKGSKKPWKHLWFVIKNKV 362

Query: 236 MYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWM 295
           +Y Y ASED+ AL S P+LG+ +  + ++++   VFQL H+G    VF AD+  S +RW+
Sbjct: 363 LYTYAASEDVAALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWI 422

Query: 296 KAMREATTL 304
            A +E T L
Sbjct: 423 DAFQEGTVL 431

Source: synthetic construct

Species: synthetic construct

Genus: N/A

Family: N/A

Order: N/A

Class: N/A

Phylum: N/A

>gi|26382536|dbj|BAB30510.2| unnamed protein product [Mus musculus]

 Score =  224 bits (570), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 125/309 (40%), Positives = 180/309 (58%), Gaps = 22/309 (7%)

Query: 1   MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
           MKV  P  E Y NE  + ++ RSF L A SA ER +W++AI ++I+E  +  ++F   RS
Sbjct: 174 MKVRKPTQEAYQNELKIESVERSFILSASSAAERDDWLEAISSSIEEYAKKRITFCPSRS 233

Query: 61  LTQSS--IPELN-LGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDY 117
           L + S    E++ LG  AP+WIPD+R +MC  CTS FT+T+RRHHCRACGK+VC  CS  
Sbjct: 234 LDEDSERKEEVSPLGAKAPIWIPDTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSSN 293

Query: 118 LAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSNF 177
              L+Y K +  RVCE C+    QE    D  +  RV +      NH         +S  
Sbjct: 294 KYGLDYLKGQLARVCEHCF----QELQKLDHQLSPRVGSPG----NH---------KSPS 336

Query: 178 KEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQV 235
             + +     PS + +K +P  L EV+AN   S  SG+L++  G  + WK  WFV+K++V
Sbjct: 337 SALSSVLHSIPSGRKQKKIPAALKEVSANTEDSTMSGYLYRSKGSKKPWKHLWFVIKNKV 396

Query: 236 MYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWM 295
           +Y Y ASED+ AL S P+LG+ +  + ++++   VFQL H+G    VF AD+  S +RW+
Sbjct: 397 LYTYAASEDVAALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWI 456

Query: 296 KAMREATTL 304
            A +E T L
Sbjct: 457 DAFQEGTVL 465

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|114325429|gb|AAH26860.2| Fgd6 protein [Mus musculus]

 Score =  223 bits (569), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 124/309 (40%), Positives = 179/309 (57%), Gaps = 22/309 (7%)

Query: 1   MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
           MKV  P  E Y NE  + ++ RSF L A SA ER +W++AI ++I+E  +  ++F   RS
Sbjct: 652 MKVRKPTQEAYQNELKIESVERSFILSASSAAERDDWLEAISSSIEEYAKKRITFCPSRS 711

Query: 61  LTQSS--IPELN-LGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDY 117
           L + S    E++ LG  AP+WIPD+R +MC  CTS FT+T+RRHHCRACGK+VC  CS  
Sbjct: 712 LDEDSERKEEVSPLGAKAPIWIPDTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSSN 771

Query: 118 LAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSNF 177
              L+Y K +  RVCE C+    QE    D  +  RV +  N              +S  
Sbjct: 772 KYGLDYLKGQLARVCEHCF----QELQKLDHQLSPRVGSPGN-------------HKSPS 814

Query: 178 KEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQV 235
             + +     PS + +K +P  L EV+AN   S  SG+L++  G  + WK  WFV+K++V
Sbjct: 815 SALSSVLHSIPSGRKQKKIPAALKEVSANTEDSTMSGYLYRSKGSKKPWKHLWFVIKNKV 874

Query: 236 MYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWM 295
           +Y Y ASED+ AL S P+LG+ +  + ++++   VFQL H+G    VF AD+  S +RW+
Sbjct: 875 LYTYAASEDVAALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWI 934

Query: 296 KAMREATTL 304
            A +E T L
Sbjct: 935 DAFQEGTVL 943

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	305
MGI|MGI:1261419	1399	Fgd6 "FYVE, RhoGEF and PH doma	0.947	0.206	0.384	8.6e-48
RGD|1565609	1390	Fgd6 "FYVE, RhoGEF and PH doma	0.947	0.207	0.384	1.8e-47
UNIPROTKB|D4A3Y7	1406	Fgd6 "Protein Fgd6" [Rattus no	0.947	0.205	0.384	1.8e-47
UNIPROTKB|Q6ZV73	1430	FGD6 "FYVE, RhoGEF and PH doma	0.947	0.202	0.373	8.3e-47
UNIPROTKB|F1MQ30	1434	FGD6 "Uncharacterized protein"	0.947	0.201	0.373	1.1e-46
UNIPROTKB|J9NYT0	1422	FGD6 "Uncharacterized protein"	0.947	0.203	0.370	1.7e-46
UNIPROTKB|F1Q280	1423	FGD6 "Uncharacterized protein"	0.947	0.203	0.370	1.7e-46
UNIPROTKB|F1SQP8	1431	FGD6 "Uncharacterized protein"	0.947	0.201	0.370	3.6e-46
UNIPROTKB|F1NVP2	1430	FGD6 "Uncharacterized protein"	0.947	0.202	0.363	1.1e-44
UNIPROTKB|E1C246	762	FGD4 "Uncharacterized protein"	0.514	0.206	0.385	7.3e-37

MGI|MGI:1261419 Fgd6 "FYVE, RhoGEF and PH domain containing 6" [Mus musculus (taxid:10090)]

 Score = 512 (185.3 bits), Expect = 8.6e-48, P = 8.6e-48
 Identities = 118/307 (38%), Positives = 174/307 (56%)

Query:     1 MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
             MKV  P  E Y NE  + ++ RSF L A SA ER +W++AI ++I+E  +  ++F   RS
Sbjct:  1108 MKVRKPTQEAYQNELKIESVERSFILSASSAAERDDWLEAISSSIEEYAKKRITFCPSRS 1167

Query:    61 LTQSSI--PELN-LGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDY 117
             L + S    E++ LG  AP+WIPD+R +MC  CTS FT+T+RRHHCRACGK+VC  CS  
Sbjct:  1168 LDEDSERKEEVSPLGAKAPIWIPDTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSSN 1227

Query:   118 LAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSNF 177
                L+Y K +  RVCE C+    QE    D  +  RV +  N +       +  ++ S  
Sbjct:  1228 KYGLDYLKGQLARVCEHCF----QELQKLDHQLSPRVGSPGNHKSPSSA--LSSVLHSI- 1280

Query:   178 KEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMY 237
                  +GR++  KK    + +  +     DS      +  K S + WK  WFV+K++V+Y
Sbjct:  1281 ----PSGRKQ--KKIPAALKE--VSANTEDSTMSGYLYRSKGSKKPWKHLWFVIKNKVLY 1332

Query:   238 KYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKA 297
              Y ASED+ AL S P+LG+ +  + ++++   VFQL H+G    VF AD+  S +RW+ A
Sbjct:  1333 TYAASEDVAALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDA 1392

Query:   298 MREATTL 304
              +E T L
Sbjct:  1393 FQEGTVL 1399

GO:0003674 "molecular_function" evidence=ND

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1565609 Fgd6 "FYVE, RhoGEF and PH domain containing 6" [Rattus norvegicus (taxid:10116)]

 Score = 509 (184.2 bits), Expect = 1.8e-47, P = 1.8e-47
 Identities = 118/307 (38%), Positives = 173/307 (56%)

Query:     1 MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
             MKV  P  E Y NE  + ++ RSF L A SA+ER +W++AI  AI+E  +  ++F   RS
Sbjct:  1099 MKVRKPTQEAYQNELKIESVERSFILSASSASERDDWLEAISRAIEEYAKKRITFCPSRS 1158

Query:    61 LTQSSI--PELN-LGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDY 117
             L + S    E++ LG  AP+WIPD+R +MC  CTS FT+T+RRHHCRACGK+VC  CS  
Sbjct:  1159 LDEDSERKEEVSPLGAKAPIWIPDTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSSN 1218

Query:   118 LAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSNF 177
                L+Y K +  RVCE C+    QE    D  +  R+ +  N +       +  ++ S  
Sbjct:  1219 KCGLDYLKGQPARVCELCF----QELQKLDHQLSPRIGSPGNHKSPSSA--LSSVLHSI- 1271

Query:   178 KEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMY 237
                  +GR++  KK    + +  +     DS      +  K S + WK  WFV+K++V+Y
Sbjct:  1272 ----PSGRKQ--KKIPAALKE--VSANTEDSTMSGYLYRSKGSKKPWKHLWFVIKNKVLY 1323

Query:   238 KYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKA 297
              Y ASED+ AL S P+LG+ +  + ++ +   VFQL H+G    VF AD+  S +RW+ A
Sbjct:  1324 TYAASEDVAALESQPLLGFTVAQVKDEHSDPRVFQLLHKGLLFYVFKADDAHSTQRWIDA 1383

Query:   298 MREATTL 304
              +E T L
Sbjct:  1384 FQEGTVL 1390

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|D4A3Y7 Fgd6 "Protein Fgd6" [Rattus norvegicus (taxid:10116)]

 Score = 509 (184.2 bits), Expect = 1.8e-47, P = 1.8e-47
 Identities = 118/307 (38%), Positives = 173/307 (56%)

Query:     1 MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
             MKV  P  E Y NE  + ++ RSF L A SA+ER +W++AI  AI+E  +  ++F   RS
Sbjct:  1115 MKVRKPTQEAYQNELKIESVERSFILSASSASERDDWLEAISRAIEEYAKKRITFCPSRS 1174

Query:    61 LTQSSI--PELN-LGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDY 117
             L + S    E++ LG  AP+WIPD+R +MC  CTS FT+T+RRHHCRACGK+VC  CS  
Sbjct:  1175 LDEDSERKEEVSPLGAKAPIWIPDTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSSN 1234

Query:   118 LAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSNF 177
                L+Y K +  RVCE C+    QE    D  +  R+ +  N +       +  ++ S  
Sbjct:  1235 KCGLDYLKGQPARVCELCF----QELQKLDHQLSPRIGSPGNHKSPSSA--LSSVLHSI- 1287

Query:   178 KEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMY 237
                  +GR++  KK    + +  +     DS      +  K S + WK  WFV+K++V+Y
Sbjct:  1288 ----PSGRKQ--KKIPAALKE--VSANTEDSTMSGYLYRSKGSKKPWKHLWFVIKNKVLY 1339

Query:   238 KYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKA 297
              Y ASED+ AL S P+LG+ +  + ++ +   VFQL H+G    VF AD+  S +RW+ A
Sbjct:  1340 TYAASEDVAALESQPLLGFTVAQVKDEHSDPRVFQLLHKGLLFYVFKADDAHSTQRWIDA 1399

Query:   298 MREATTL 304
              +E T L
Sbjct:  1400 FQEGTVL 1406

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q6ZV73 FGD6 "FYVE, RhoGEF and PH domain-containing protein 6" [Homo sapiens (taxid:9606)]

 Score = 503 (182.1 bits), Expect = 8.3e-47, P = 8.3e-47
 Identities = 115/308 (37%), Positives = 176/308 (57%)

Query:     1 MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
             MKV  P  E Y NE  + ++ RSF L A SA ER EW++AI  AI+E  +  ++F   RS
Sbjct:  1138 MKVRKPTQEAYQNELKIESVERSFILSASSATERDEWLEAISRAIEEYAKKRITFCPSRS 1197

Query:    61 LTQSSIP---ELN-LGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSD 116
             L ++      E++ LG  AP+WIPD+R +MC  CTS FT+T+RRHHCRACGK+VC  CS 
Sbjct:  1198 LDEADSENKEEVSPLGSKAPIWIPDTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSS 1257

Query:   117 YLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSN 176
                 L+Y K +  RVCE C+  L Q+ D + S    R+ +  N +       +  ++ S 
Sbjct:  1258 NKYGLDYLKNQPARVCEHCFQEL-QKLDHQHS---PRIGSPGNHKSPSSA--LSSVLHSI 1311

Query:   177 FKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVM 236
                   +GR++  KK    + +  +     DS      +  K + + WK +WFV+K++V+
Sbjct:  1312 -----PSGRKQ--KKIPAALKE--VSANTEDSSMSGYLYRSKGNKKPWKHFWFVIKNKVL 1362

Query:   237 YKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMK 296
             Y Y ASED+ AL S P+LG+ +  + ++++   VFQL H+     VF A++  S ++W++
Sbjct:  1363 YTYAASEDVAALESQPLLGFTVIQVKDENSESKVFQLLHKNMLFYVFKAEDAHSAQKWIE 1422

Query:   297 AMREATTL 304
             A +E T L
Sbjct:  1423 AFQEGTIL 1430

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0001726 "ruffle" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0008360 "regulation of cell shape" evidence=ISS

GO:0030027 "lamellipodium" evidence=ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0030036 "actin cytoskeleton organization" evidence=ISS

GO:0031267 "small GTPase binding" evidence=ISS

GO:0043088 "regulation of Cdc42 GTPase activity" evidence=ISS

GO:0046847 "filopodium assembly" evidence=ISS

GO:0007010 "cytoskeleton organization" evidence=ISS

UNIPROTKB|F1MQ30 FGD6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 502 (181.8 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 115/308 (37%), Positives = 173/308 (56%)

Query:     1 MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
             MKV  P  E Y NE  + ++ RSF L A SA ER EW++AI  +I+E  +  ++F   RS
Sbjct:  1142 MKVRKPTQEAYQNELKIESVERSFILSASSAPERDEWLEAISRSIEEYAKKRITFCPSRS 1201

Query:    61 LTQSSIPELN----LGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSD 116
             L ++   + +    LG  AP+WIPD+R +MC  CTS FT+T+RRHHCRACGK+VC  CS 
Sbjct:  1202 LDEADSEDKDEVSPLGSKAPIWIPDTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSS 1261

Query:   117 YLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSN 176
                 L+Y K +  RVCE C+  L Q+ D + S  F           NH+  +    + S 
Sbjct:  1262 NKYGLDYLKNQPARVCEHCFQEL-QKLDHQHSPKF-------GSPGNHKSPS--SALSSV 1311

Query:   177 FKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVM 236
                +  +GR++  KK    + +  +     DS      +  K + + WK  WFV+K++V+
Sbjct:  1312 LHSI-PSGRKQ--KKIPAALKE--VSANTEDSSMSGYLYRSKGNKKPWKHLWFVIKNKVL 1366

Query:   237 YKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMK 296
             Y Y ASED+ AL S P+LG+ +  + ++++   VFQL H+     VF AD+  S ++W++
Sbjct:  1367 YTYAASEDVAALESQPLLGFTVTQVKDENSESRVFQLLHKNMLFYVFKADDAHSAQKWIE 1426

Query:   297 AMREATTL 304
             A +E T L
Sbjct:  1427 AFQEGTIL 1434

GO:0046872 "metal ion binding" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|J9NYT0 FGD6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 500 (181.1 bits), Expect = 1.7e-46, P = 1.7e-46
 Identities = 114/308 (37%), Positives = 176/308 (57%)

Query:     1 MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
             MKV  P  E Y NE  + ++ RSF L A SA ER EW++AI  +I+E  +  ++F   RS
Sbjct:  1130 MKVRKPTQEAYQNELKIESVERSFILSASSATERDEWLEAISRSIEEYAKKRITFCPSRS 1189

Query:    61 LTQSSIP---ELN-LGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSD 116
             L ++      E++ LG  AP+WIPD+R +MC  CTS FT+T+RRHHCRACGK+VC  CS 
Sbjct:  1190 LDEADSENKEEVSPLGSKAPIWIPDTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSS 1249

Query:   117 YLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSN 176
                 L+Y K +  RVCE C+  L Q+ D + S    ++ +  N +     + +  ++ S 
Sbjct:  1250 NKYGLDYLKNQPARVCEHCFQEL-QKLDHQHS---PKIGSPGNHKSPS--STLSSVLHSI 1303

Query:   177 FKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVM 236
                   +GR++  KK    + +  +     DS      +  K + + WK  WFV+K++V+
Sbjct:  1304 -----PSGRKQ--KKIPAALKE--VSANTEDSSMSGYLYRSKGNKKPWKHLWFVIKNKVL 1354

Query:   237 YKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMK 296
             Y Y ASED+ AL S P+LG+ +  + ++++   VFQL H+     VF AD+  S ++W++
Sbjct:  1355 YTYAASEDVAALESQPLLGFTVTQVKDENSESRVFQLLHKNMLFYVFKADDAHSAQKWIE 1414

Query:   297 AMREATTL 304
             A +E T L
Sbjct:  1415 AFQEGTIL 1422

GO:0046872 "metal ion binding" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|F1Q280 FGD6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 500 (181.1 bits), Expect = 1.7e-46, P = 1.7e-46
 Identities = 114/308 (37%), Positives = 176/308 (57%)

Query:     1 MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
             MKV  P  E Y NE  + ++ RSF L A SA ER EW++AI  +I+E  +  ++F   RS
Sbjct:  1131 MKVRKPTQEAYQNELKIESVERSFILSASSATERDEWLEAISRSIEEYAKKRITFCPSRS 1190

Query:    61 LTQSSIP---ELN-LGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSD 116
             L ++      E++ LG  AP+WIPD+R +MC  CTS FT+T+RRHHCRACGK+VC  CS 
Sbjct:  1191 LDEADSENKEEVSPLGSKAPIWIPDTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSS 1250

Query:   117 YLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSN 176
                 L+Y K +  RVCE C+  L Q+ D + S    ++ +  N +     + +  ++ S 
Sbjct:  1251 NKYGLDYLKNQPARVCEHCFQEL-QKLDHQHS---PKIGSPGNHKSPS--STLSSVLHSI 1304

Query:   177 FKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVM 236
                   +GR++  KK    + +  +     DS      +  K + + WK  WFV+K++V+
Sbjct:  1305 -----PSGRKQ--KKIPAALKE--VSANTEDSSMSGYLYRSKGNKKPWKHLWFVIKNKVL 1355

Query:   237 YKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMK 296
             Y Y ASED+ AL S P+LG+ +  + ++++   VFQL H+     VF AD+  S ++W++
Sbjct:  1356 YTYAASEDVAALESQPLLGFTVTQVKDENSESRVFQLLHKNMLFYVFKADDAHSAQKWIE 1415

Query:   297 AMREATTL 304
             A +E T L
Sbjct:  1416 AFQEGTIL 1423

GO:0046872 "metal ion binding" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|F1SQP8 FGD6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 497 (180.0 bits), Expect = 3.6e-46, P = 3.6e-46
 Identities = 114/308 (37%), Positives = 175/308 (56%)

Query:     1 MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
             MKV  P  E Y NE  + ++ RSF L A SA ER EW++AI  +I+E  +  ++F   RS
Sbjct:  1139 MKVRKPTQEAYQNELKIESVERSFILSASSAPERDEWLEAISRSIEEYAKKRITFCPSRS 1198

Query:    61 LTQSSIP---ELN-LGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSD 116
             L ++      E++ LG  AP+WIPD+R +MC  CTS FT+T+RRHHCRACGK+VC  CS 
Sbjct:  1199 LDEADSENKDEVSPLGSKAPIWIPDTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSS 1258

Query:   117 YLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSN 176
                 L+Y K +  RVCE CY  L Q+ D + +    ++ +  N +     + +  ++ S 
Sbjct:  1259 NKYGLDYLKNQPARVCEHCYQEL-QKLDHQHA---PKIGSPGNHKSPS--STLSSVLHSI 1312

Query:   177 FKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVM 236
                   +GR++  KK    + +  +     DS      +  K + + WK  WFV+K++V+
Sbjct:  1313 -----PSGRKQ--KKIPAALKE--VSANTEDSSMSGYLYRSKGNKKPWKHLWFVIKNKVL 1363

Query:   237 YKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMK 296
             Y Y ASED+ AL S P+LG+ +  + ++++   VFQL H+     VF AD+  S  +W++
Sbjct:  1364 YTYAASEDVAALESQPLLGFTVTQVKDENSESRVFQLLHKNMLFYVFKADDAHSAHKWIE 1423

Query:   297 AMREATTL 304
             A +E T L
Sbjct:  1424 AFQEGTIL 1431

GO:0046872 "metal ion binding" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|F1NVP2 FGD6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 483 (175.1 bits), Expect = 1.1e-44, P = 1.1e-44
 Identities = 112/308 (36%), Positives = 175/308 (56%)

Query:     1 MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
             MKV  P  E Y NE ++ ++ RSF L A SA ER EW++AI  +I++  +  ++F   +S
Sbjct:  1138 MKVKKPSQEAYQNELNIESVERSFILSASSATERDEWLEAISRSIEDYAKKRITFNPSKS 1197

Query:    61 LTQSSIPELN----LGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSD 116
             L ++   +      LG  AP+WIPD+R +MC  CTS FT+T+RRHHCRACGK+VC  CS 
Sbjct:  1198 LEEADTEKREEASPLGSKAPIWIPDTRATMCMICTSEFTLTWRRHHCRACGKIVCQACSS 1257

Query:   117 YLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNMMDIIRSN 176
                 L+Y K +  RVC+ C+  L Q+ D++ S   +    V +   +  ++ ++  I S 
Sbjct:  1258 NKHGLDYMKNQPARVCDHCFREL-QKQDNQCSP--KTGSPVNHKSPSSALSTVLHSIPSG 1314

Query:   177 FKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVM 236
              K+     ++ P+    K V     + T   SG  H     K S + WK  WFV+K++V+
Sbjct:  1315 RKQ-----KKIPAAL--KEVSANTEDSTM--SGYLHRS---KGSKKPWKHLWFVIKNKVL 1362

Query:   237 YKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMK 296
             Y Y ASED+ AL S P+LG+ +  + ++++   VF L H+     +F AD+  S ++W++
Sbjct:  1363 YTYAASEDVAALESQPLLGFTVSEVRDENSESRVFHLLHKNTLFYIFKADDPHSAQKWIE 1422

Query:   297 AMREATTL 304
             A +E T L
Sbjct:  1423 AFQEGTVL 1430

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E1C246 FGD4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 295 (108.9 bits), Expect = 7.3e-37, Sum P(2) = 7.3e-37
 Identities = 64/166 (38%), Positives = 94/166 (56%)

Query:     1 MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
             MK+     E+Y + F V    R+  L+A S  ++ EWI A+Q  I+  +Q   +F N  +
Sbjct:   471 MKIIETHNEEYPHTFQVSGKERTLELQASSEQDKEEWIKALQNTIEAFQQRNETFRNAIA 530

Query:    61 LTQSSIP-ELN---LGKVAPLWIPDSRVSMCQRCTSVFT-VTFRRHHCRACGKVVCGPCS 115
                  +P E++   LGK AP WI D+ V+MC +C   F  +T RRHHCRACG VVC  CS
Sbjct:   531 KEYEDMPIEVSNAELGKRAPRWIRDNEVTMCMKCKEPFNALTRRRHHCRACGHVVCWKCS 590

Query:   116 DYLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVE 161
             DY A LEY   +  +VC++CYH ++   D E+    ++ K +  +E
Sbjct:   591 DYKAHLEYDGNKLNKVCKDCYHVIIGCTDSEE----KKKKGILEIE 632

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030032 "lamellipodium assembly" evidence=IEA

GO:0030035 "microspike assembly" evidence=IEA

GO:0030175 "filopodium" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	305
cd13237	90	cd13237, PH2_FGD5_FGD6, FYVE, RhoGEF and PH domain	2e-29
cd13248	104	cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate	5e-26
pfam01363	68	pfam01363, FYVE, FYVE zinc finger	1e-23
smart00064	68	smart00064, FYVE, Protein present in Fab1, YOTB, V	5e-21
cd00065	57	cd00065, FYVE, FYVE domain; Zinc-binding domain; t	1e-16
pfam00169	101	pfam00169, PH, PH domain	4e-16
cd13389	125	cd13389, PH1_FGD5_FGD6, FYVE, RhoGEF and PH domain	9e-16
cd01260	114	cd01260, PH_CNK_mammalian-like, Connector enhancer	2e-15
smart00233	102	smart00233, PH, Pleckstrin homology domain	3e-15
cd13236	105	cd13236, PH2_FGD1-4, FYVE, RhoGEF and PH domain co	3e-14
cd13263	114	cd13263, PH_RhoGap25-like, Rho GTPase activating p	7e-14
cd13316	95	cd13316, PH_Boi, Boi family Pleckstrin homology do	8e-12
cd13235	113	cd13235, PH2_FARP1-like, FERM, RhoGEF and pleckstr	2e-11
cd00821	92	cd00821, PH, Pleckstrin homology (PH) domain	9e-11
cd13281	139	cd13281, PH_PLEKHD1, Pleckstrin homology (PH) doma	2e-09
cd13326	90	cd13326, PH_CNK_insect-like, Connector enhancer of	3e-08
cd13288	120	cd13288, PH_Ses, Sesquipedalian family Pleckstrin	3e-08
cd13276	117	cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin	1e-07
cd13296	111	cd13296, PH2_MyoX, Myosin X Pleckstrin homology (P	2e-07
cd13299	102	cd13299, PH2_PH_fungal, Fungal proteins Pleckstrin	2e-07
cd13215	130	cd13215, PH-GRAM1_AGT26, Autophagy-related protein	6e-07
cd13308	113	cd13308, PH_3BP2, SH3 domain-binding protein 2 Ple	8e-07
cd13379	114	cd13379, PH_RhoGap24, Rho GTPase activating protei	1e-06
cd13298	106	cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin	2e-06
cd13378	116	cd13378, PH_RhoGAP2, Rho GTPase activating protein	3e-06
cd01259	124	cd01259, PH_APBB1IP, Amyloid beta (A4) Precursor p	1e-05
cd01252	118	cd01252, PH_GRP1-like, General Receptor for Phosph	2e-05
cd01265	101	cd01265, PH_TBC1D2A, TBC1 domain family member 2A	4e-05
cd13306	107	cd13306, PH1_AFAP, Actin filament associated prote	7e-05
cd01253	113	cd01253, PH_ARHGAP21-like, ARHGAP21 and related pr	2e-04
cd13250	98	cd13250, PH_ACAP, ArfGAP with coiled-coil, ankyrin	2e-04
cd13282	96	cd13282, PH1_PLEKHH1_PLEKHH2, Pleckstrin homology	2e-04
cd01237	110	cd01237, PH_fermitin, Fermitin family pleckstrin h	3e-04
cd13272	116	cd13272, PH_INPP4A_INPP4B, Type I inositol 3,4-bis	4e-04
cd13238	96	cd13238, PH2_FGD4_insect-like, FYVE, RhoGEF and PH	6e-04
cd01238	140	cd01238, PH_Btk, Bruton's tyrosine kinase pleckstr	7e-04
cd13267	125	cd13267, PH_DOCK-D, Dedicator of cytokinesis-D sub	0.001
cd01235	106	cd01235, PH_Sbf1_hMTMR5, Set binding factor 1 (als	0.001
cd13260	103	cd13260, PH_RASA1, RAS p21 protein activator (GTPa	0.001
cd13273	110	cd13273, PH_SWAP-70, Switch-associated protein-70	0.001
cd13255	110	cd13255, PH_TAAP2-like, Tandem PH-domain-containin	0.002
cd01218	123	cd01218, PH_Phafin2-like, Phafin2 (also called EAP	0.002
cd13297	123	cd13297, PH3_MyoX-like, Myosin X-like Pleckstrin h	0.002
cd13301	108	cd13301, PH1_Pleckstrin_2, Pleckstrin 2 Pleckstrin	0.002
cd01219	107	cd01219, PH1_FGD1, FYVE, RhoGEF and PH domain cont	0.003
cd13387	107	cd13387, PH1_FGD3, FYVE, RhoGEF and PH domain cont	0.004

>gnl|CDD|241391 cd13237, PH2_FGD5_FGD6, FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins 5 and 6 pleckstrin homology (PH) domain, C-terminus

 Score =  107 bits (268), Expect = 2e-29
 Identities = 44/89 (49%), Positives = 62/89 (69%), Gaps = 4/89 (4%)

Query: 213 SGWLH--KKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF--K 268
           SG+L+  K+  ++WKR WFVLKD+V+Y YKASED+ AL SIP+LGY +    E       
Sbjct: 2   SGYLYRRKRKKKSWKRLWFVLKDKVLYTYKASEDVVALESIPLLGYTVVPAKEGFEGDES 61

Query: 269 YVFQLKHQGQDPLVFGADNEQSYERWMKA 297
            VFQL H+GQ P +F AD+ ++ +RW++A
Sbjct: 62  LVFQLLHKGQLPYIFRADDAETAQRWIEA 90

FGD5 regulates promotes angiogenesis of vascular endothelial growth factor (VEGF) in vascular endothelial cells, including network formation, permeability, directional movement, and proliferation. The specific function of FGD6 is unknown. In general, FGDs have a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. All FGDs are guanine nucleotide exchange factors that activate the Rho GTPase Cdc42, an important regulator of membrane trafficking. The RhoGEF domain is responsible for GEF catalytic activity, while the PH domain is involved in intracellular targeting of the DH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 90

>gnl|CDD|241402 cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate binding proteins 1, 2, and 3 pleckstrin homology (PH) domain

 Score = 98.9 bits (247), Expect = 5e-26
 Identities = 41/94 (43%), Positives = 56/94 (59%), Gaps = 5/94 (5%)

Query: 213 SGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQD--NF 267
           SGWLHK+ G   +NWK+ WFVLKD  +Y YK  E+ KAL SI +  Y +   +  D  N 
Sbjct: 10  SGWLHKQGGSGLKNWKKRWFVLKDNCLYYYKDPEEEKALGSILLPSYTISPASPSDEINR 69

Query: 268 KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
           K+ F+ +H G     F AD ++  E+WMKA+  A
Sbjct: 70  KFAFKAEHAGMRTYYFAADTQEEMEQWMKALSLA 103

PEPP1 (also called PLEKHA4/PH domain-containing family A member 4 and RHOXF1/Rhox homeobox family member 1), and related homologs PEPP2 (also called PLEKHA5/PH domain-containing family A member 5) and PEPP3 (also called PLEKHA6/PH domain-containing family A member 6), have PH domains that interact specifically with PtdIns(3,4)P3. Other proteins that bind PtdIns(3,4)P3 specifically are: TAPP1 (tandem PH-domain-containing protein-1) and TAPP2], PtdIns3P AtPH1, and Ptd- Ins(3,5)P2 (centaurin-beta2). All of these proteins contain at least 5 of the 6 conserved amino acids that make up the putative phosphatidylinositol 3,4,5- trisphosphate-binding motif (PPBM) located at their N-terminus. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 104

>gnl|CDD|216454 pfam01363, FYVE, FYVE zinc finger

 Score = 91.3 bits (227), Expect = 1e-23
 Identities = 29/68 (42%), Positives = 37/68 (54%), Gaps = 2/68 (2%)

Query: 76  PLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPL--EYKKFRNFRVCE 133
           P W+PDS V+ C  C   F+   RRHHCR CGKV C  CS     L  +    +  RVC+
Sbjct: 1   PRWVPDSDVTNCMGCGKPFSFFRRRHHCRNCGKVFCSSCSSKKIALLPKLGINKPVRVCD 60

Query: 134 ECYHYLVQ 141
           +CY  L +
Sbjct: 61  DCYDKLQK 68

The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn++ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. We have included members which do not conserve these histidine residues but are clearly related. Length = 68

>gnl|CDD|214499 smart00064, FYVE, Protein present in Fab1, YOTB, Vac1, and EEA1

 Score = 84.4 bits (209), Expect = 5e-21
 Identities = 32/66 (48%), Positives = 37/66 (56%), Gaps = 1/66 (1%)

Query: 75  APLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYK-KFRNFRVCE 133
            P WIPD  VS C  C   F +T RRHHCR CG++ C  CS   APL      R  RVC+
Sbjct: 1   RPHWIPDEEVSNCMGCGKEFNLTKRRHHCRNCGRIFCSKCSSKKAPLPKLGIERPVRVCD 60

Query: 134 ECYHYL 139
           +CY  L
Sbjct: 61  DCYENL 66

The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PHD finger and the RING finger. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. The FYVE finger functions in the membrane recruitment of cytosolic proteins by binding to phosphatidylinositol 3-phosphate (PI3P), which is prominent on endosomes. The R+HHC+XCG motif is critical for PI3P binding. Length = 68

>gnl|CDD|238022 cd00065, FYVE, FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;

 Score = 72.5 bits (178), Expect = 1e-16
 Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 84  VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKF-RNFRVCEECY 136
            S C  C   FT+T RRHHCR CG++ C  CS    PL      +  RVC+ CY
Sbjct: 2   ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSMGGGKPVRVCDSCY 55

Length = 57

>gnl|CDD|215766 pfam00169, PH, PH domain

 Score = 72.1 bits (177), Expect = 4e-16
 Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 7/98 (7%)

Query: 212 HSGWLHKKSG---RNWKRYWFVLKDQVM--YKYKASEDIKALLSIPVLGYELEALNEQDN 266
             GWL KK     ++WK+ +FVL D V+  YK       +   SIP+ G ++  + + ++
Sbjct: 3   KEGWLLKKGSGGRKSWKKRYFVLFDGVLLYYKDSKKSSSRPKGSIPLSGCQVTKVPDSED 62

Query: 267 FK--YVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
            K    F+++   ++  +  A++E+  + W+KA+R A 
Sbjct: 63  GKRKNCFEIRTGDRETFLLQAESEEERKEWVKAIRSAI 100

PH stands for pleckstrin homology. Length = 101

>gnl|CDD|241540 cd13389, PH1_FGD5_FGD6, FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins 5 and 6 Pleckstrin Homology (PH) domain

 Score = 71.9 bits (177), Expect = 9e-16
 Identities = 27/60 (45%), Positives = 40/60 (66%)

Query: 1   MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
           MKV LP+ E+Y+NEF + +  RSFTL A SA ER EW+ A+  AI++  +   +F + +S
Sbjct: 64  MKVSLPEDEEYSNEFQIESTKRSFTLSASSAEERDEWVKALSRAIEDYTKKRRTFGSNKS 123

FGD5 regulates promotes angiogenesis of vascular endothelial growth factor (VEGF) in vascular endothelial cells, including network formation, permeability, directional movement, and proliferation. The specific function of FGD6 is unknown. In general, FGDs have a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. All FGDs are guanine nucleotide exchange factors that activate the Rho GTPase Cdc42, an important regulator of membrane trafficking. The RhoGEF domain is responsible for GEF catalytic activity, while the PH domain is involved in intracellular targeting of the DH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 125

>gnl|CDD|241291 cd01260, PH_CNK_mammalian-like, Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

 Score = 70.9 bits (174), Expect = 2e-15
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 7/97 (7%)

Query: 214 GWLHKKS------GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF 267
           GWL KK       G+ WKRYWFVLK   +Y Y   +D KA   I +  +++E  +E    
Sbjct: 17  GWLWKKKEAKGFFGQKWKRYWFVLKGSSLYWYNNPQDEKAEGFINLPDFKIERASECKK- 75

Query: 268 KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 304
           KY F+  H       F A+N     +W+  +  A   
Sbjct: 76  KYAFKASHPKIKTFYFAAENLDDMNKWLSKLITAINK 112

CNK family members function as protein scaffolds, regulating the activity and the subcellular localization of RAS activated RAF. There is a single CNK protein present in Drosophila and Caenorhabditis elegans in contrast to mammals which have 3 CNK proteins (CNK1, CNK2, and CNK3). All of the CNK members contain a sterile a motif (SAM), a conserved region in CNK (CRIC) domain, and a PSD-95/DLG-1/ZO-1 (PDZ) domain, and, with the exception of CNK3, a PH domain. A CNK2 splice variant CNK2A also has a PDZ domain-binding motif at its C terminus and Drosophila CNK (D-CNK) also has a domain known as the Raf-interacting region (RIR) that mediates binding of the Drosophila Raf kinase. This cd contains CNKs from mammals, chickens, amphibians, fish, and crustacea. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain

 Score = 69.9 bits (171), Expect = 3e-15
 Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 8/99 (8%)

Query: 212 HSGWLHKKSG---RNWKRYWFVLKDQVMYKYK---ASEDIKALLSIPVLGYELEALNEQD 265
             GWL+KKSG   ++WK+ +FVL +  +  YK     +  K   SI + G  +    + D
Sbjct: 3   KEGWLYKKSGGGKKSWKKRYFVLFNSTLLYYKSKKDKKSYKPKGSIDLSGCTVREAPDPD 62

Query: 266 NF--KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
           +    + F++K   +  L+  A++E+  E+W++A+R+A 
Sbjct: 63  SSKKPHCFEIKTSDRKTLLLQAESEEEREKWVEALRKAI 101

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. Length = 102

>gnl|CDD|241390 cd13236, PH2_FGD1-4, FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins pleckstrin homology (PH) domain, C-terminus

 Score = 67.3 bits (165), Expect = 3e-14
 Identities = 29/105 (27%), Positives = 56/105 (53%), Gaps = 10/105 (9%)

Query: 206 NDSGSQHS---GWLH-KKSGRNWKRYWFVLKD---QVMYKYKASEDIKALLSIPVLGYEL 258
                ++S    +L   + G+ W++ W V+      V+Y Y A +D++A  +IP+ GYE+
Sbjct: 1   ASLVPENSLLCSFLQYSEKGKTWQKVWCVIPRTEPLVLYLYGAPQDVRAPRTIPLPGYEV 60

Query: 259 EALNEQDNF--KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
                ++    K+VF+L  Q +    F A++E+  +RW++A+  A
Sbjct: 61  SVPPPEERLDGKHVFKL-SQSKQSHYFSAESEELQQRWLEALSRA 104

In general, FGDs have a RhoGEF (DH) domain, followed by an N-terminal PH domain, a FYVE domain and a C-terminal PH domain. All FGDs are guanine nucleotide exchange factors that activates the Rho GTPase Cdc42, an important regulator of membrane trafficking. The RhoGEF domain is responsible for GEF catalytic activity, while the N-terminal PH domain is involved in intracellular targeting of the DH domain. Not much is known about FGD2. FGD1 is the best characterized member of the group with mutations here leading to the X-linked disorder known as faciogenital dysplasia (FGDY). Both FGD1 and FGD3 are targeted by the ubiquitin ligase SCF(FWD1/beta-TrCP) upon phosphorylation of two serine residues in its DSGIDS motif and subsequently degraded by the proteasome. However, FGD1 and FGD3 induced significantly different morphological changes in HeLa Tet-Off cells and while FGD1 induced long finger-like protrusions, FGD3 induced broad sheet-like protrusions when the level of GTP-bound Cdc42 was significantly increased by the inducible expression of FGD3. They also reciprocally regulated cell motility in inducibly expressed in HeLa Tet-Off cells, FGD1 stimulated cell migration while FGD3 inhibited it. FGD1 and FGD3 therefore play different roles to regulate cellular functions, even though their intracellular levels are tightly controlled by the same destruction pathway through SCF(FWD1/beta-TrCP). FGD4 is one of the genes associated with Charcot-Marie-Tooth neuropathy type 4 (CMT4), a group of progressive motor and sensory axonal and demyelinating neuropathies that are distinguished from other forms of CMT by autosomal recessive inheritance. Those affected have distal muscle weakness and atrophy associated with sensory loss and, frequently, pes cavus foot deformity. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 105

>gnl|CDD|241417 cd13263, PH_RhoGap25-like, Rho GTPase activating protein 25 and related proteins Pleckstrin homology (PH) domain

 Score = 66.6 bits (163), Expect = 7e-14
 Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 12/102 (11%)

Query: 212 HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEAL--NEQDNF 267
            SGWL K+ G  +NW+R WFVL+   +Y YK  ++ K    IP+ G  ++ L  N ++  
Sbjct: 5   KSGWLKKQGGIVKNWQRRWFVLRGDQLYYYKDEDESKPQGCIPLPGNTVKELPFNPEEPG 64

Query: 268 KYVFQLK--------HQGQDPLVFGADNEQSYERWMKAMREA 301
           K++F++             D  +  A+++   E W+K +R  
Sbjct: 65  KFLFEIIPGDGGTRRSANHDSYLLMANSQAEMEEWVKVIRRV 106

RhoGAP25 (also called ArhGap25) like other RhoGaps are involved in cell polarity, cell morphology and cytoskeletal organization. They act as GTPase activators for the Rac-type GTPases by converting them to an inactive GDP-bound state and control actin remodeling by inactivating Rac downstream of Rho leading to suppress leading edge protrusion and promotes cell retraction to achieve cellular polarity and are able to suppress RAC1 and CDC42 activity in vitro. Overexpression of these proteins induces cell rounding with partial or complete disruption of actin stress fibers and formation of membrane ruffles, lamellipodia, and filopodia. This hierarchy contains RhoGAP22, RhoGAP24, and RhoGAP25. Members here contain an N-terminal PH domain followed by a RhoGAP domain and either a BAR or TATA Binding Protein (TBP) Associated Factor 4 (TAF4) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241470 cd13316, PH_Boi, Boi family Pleckstrin homology domain

 Score = 60.1 bits (146), Expect = 8e-12
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 212 HSGWLHKKSGRN--WKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF-K 268
           HSGW+ K+  R   WK  +FVLK   +Y  K+  D K    I + G+ +   +      +
Sbjct: 1   HSGWMKKRGERYGTWKTRYFVLKGTRLYYLKSENDSKEKGLIDLTGHRVTVDDSNSKPGR 60

Query: 269 YVFQLKH-QGQDPLVFGADNEQSYERWMKAMREAT 302
           Y F+L     +    F  D ++    WMKA+ +AT
Sbjct: 61  YGFKLVPPAVEKVHYFAVDEKEVLREWMKALMKAT 95

Yeast Boi proteins Boi1 and Boi2 are functionally redundant and important for cell growth with Boi mutants displaying defects in bud formation and in the maintenance of cell polarity.They appear to be linked to Rho-type GTPase, Cdc42 and Rho3. Boi1 and Boi2 display two-hybrid interactions with the GTP-bound ("active") form of Cdc42, while Rho3 can suppress of the lethality caused by deletion of Boi1 and Boi2. These findings suggest that Boi1 and Boi2 are targets of Cdc42 that promote cell growth in a manner that is regulated by Rho3. Boi proteins contain a N-terminal SH3 domain, followed by a SAM (sterile alpha motif) domain, a proline-rich region, which mediates binding to the second SH3 domain of Bem1, and C-terminal PH domain. The PH domain is essential for its function in cell growth and is important for localization to the bud, while the SH3 domain is needed for localization to the neck. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 95

>gnl|CDD|241389 cd13235, PH2_FARP1-like, FERM, RhoGEF and pleckstrin domain-containing protein 1 and related proteins Pleckstrin Homology (PH) domain, repeat 2

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 5/97 (5%)

Query: 210 SQHSGWLHKK--SGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF 267
           +Q SG+L +K  +   W++ W V  +  ++ YK+ +D   L S+P+LGY +   +E DN 
Sbjct: 18  NQMSGYLLRKFKNSNGWQKLWVVFTNFCLFFYKSHQDEFPLASLPLLGYSVGLPSEADNI 77

Query: 268 K--YVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
              YVF+L+        F A++E ++ERWM+ +R AT
Sbjct: 78  DKDYVFKLQF-KSHVYFFRAESEYTFERWMEVIRSAT 113

Members here include FARP1 (also called Chondrocyte-derived ezrin-like protein; PH domain-containing family C member 2), FARP2 (also called FIR/FERM domain including RhoGEF; FGD1-related Cdc42-GEF/FRG), and FARP6 (also called Zinc finger FYVE domain-containing protein 24). They are members of the Dbl family guanine nucleotide exchange factors (GEFs) which are upstream positive regulators of Rho GTPases. Little is known about FARP1 and FARP6, though FARP1 has increased expression in differentiated chondrocytes. FARP2 is thought to regulate neurite remodeling by mediating the signaling pathways from membrane proteins to Rac. It is found in brain, lung, and testis, as well as embryonic hippocampal and cortical neurons. FARP1 and FARP2 are composed of a N-terminal FERM domain, a proline-rich (PR) domain, Dbl-homology (DH), and two C-terminal PH domains. FARP6 is composed of Dbl-homology (DH), and two C-terminal PH domains separated by a FYVE domain. This hierarchy contains the second PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 113

>gnl|CDD|241231 cd00821, PH, Pleckstrin homology (PH) domain

 Score = 57.4 bits (138), Expect = 9e-11
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 212 HSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDI--KALLSIPVLGYELEALNEQDN 266
             GWL K+ G   ++WK+ WFVL D V+  YK+ +D   K    IP+       L     
Sbjct: 1   KEGWLKKRGGKGLKSWKKRWFVLFDDVLLYYKSKKDSSKKPKGLIPLSDGLEVELVSSSG 60

Query: 267 FKYVFQLKHQGQD-PLVFGADNEQSYERWMKA 297
               F+L    +       A++E+  E W++A
Sbjct: 61  KPNCFELVTPDRGRTYYLQAESEEEREEWLEA 92

PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 92

>gnl|CDD|241435 cd13281, PH_PLEKHD1, Pleckstrin homology (PH) domain containing, family D (with coiled-coil domains) member 1 PH domain

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 16/107 (14%)

Query: 211 QHSGWLHKK----SGRNWKRYWFVLKDQVMYKYKASE----------DIKALLSIPVLGY 256
           Q SG L K+        W + +FVLK+  +  Y  SE          +I     IP+ G 
Sbjct: 13  QLSGVLWKRPFGRQSAKWSKRFFVLKECFLLYYAESEKKDFEKTRRFNIHPKGVIPLGGC 72

Query: 257 ELEALNEQDNFKYVFQLKHQG-QDPLVFGADNEQSYERWMKAMREAT 302
            +EA  +     Y F + H   +  ++  AD+E+  E W+  +REAT
Sbjct: 73  SIEAGRDPGR-PYCFLISHPDFKGSIILAADSEEEQESWLDMLREAT 118

Human PLEKHD1 (also called UPF0639, pleckstrin homology domain containing, family D (with M protein repeats) member 1) is a single transcript and contains a single PH domain. PLEKHD1 is conserved in human, chimpanzee, , dog, cow, mouse, chicken, zebrafish, and Caenorhabditis elegans. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 139

>gnl|CDD|241480 cd13326, PH_CNK_insect-like, Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 6/87 (6%)

Query: 214 GWLHKKS-----GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFK 268
           GWL+++      G  W + WFVLK   +Y +++ E  KA   I + G+ +    E  + K
Sbjct: 3   GWLYQRRRKGKGGGKWAKRWFVLKGSNLYGFRSQESTKADCVIFLPGFTVSPAPEVKSRK 62

Query: 269 YVFQLKHQGQDPLVFGADNEQSYERWM 295
           Y F++ H G     F A++++  ++W+
Sbjct: 63  YAFKVYHTGT-VFYFAAESQEDMKKWL 88

CNK family members function as protein scaffolds, regulating the activity and the subcellular localization of RAS activated RAF. There is a single CNK protein present in Drosophila and Caenorhabditis elegans in contrast to mammals which have 3 CNK proteins (CNK1, CNK2, and CNK3). All of the CNK members contain a sterile a motif (SAM), a conserved region in CNK (CRIC) domain, and a PSD-95/DLG-1/ZO-1 (PDZ) domain, and a PH domain. A CNK2 splice variant CNK2A also has a PDZ domain-binding motif at its C terminus and Drosophila CNK (D-CNK) also has a domain known as the Raf-interacting region (RIR) that mediates binding of the Drosophila Raf kinase. This cd contains CNKs from insects, spiders, mollusks, and nematodes. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 90

>gnl|CDD|241442 cd13288, PH_Ses, Sesquipedalian family Pleckstrin homology (PH) domain

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 8/104 (7%)

Query: 204 TANDSGSQHSGWLHKKSGRN--WKRYWFVLKDQVMYKYKASEDIKALLSIPVL-GYELEA 260
            + +S     G+L KK  RN  +++ WFVLK  +++ ++   D +  L + VL G  +E 
Sbjct: 2   ASCNSPVDKEGYLWKKGERNTSYQKRWFVLKGNLLFYFEKKGD-REPLGVIVLEGCTVEL 60

Query: 261 LNEQDNFKYVFQLKHQGQDP--LVFGADNEQSYERWMKAMREAT 302
             +++   Y F ++  G      V  A++++  E WMKA+  A+
Sbjct: 61  SEDEEP--YAFAIRFDGPGSRSYVLAAESQEDMESWMKALSRAS 102

The sesquipedalian family has 2 mammalian members: Ses1 and Ses2, which are also callled 7 kDa inositol polyphosphate phosphatase-interacting protein 1 and 2. They play a role in endocytic trafficking and are required for receptor recycling from endosomes, both to the trans-Golgi network and the plasma membrane. Members of this family form homodimers and heterodimers. Sesquipedalian interacts with inositol polyphosphate 5-phosphatase OCRL-1 (INPP5F) also known as Lowe oculocerebrorenal syndrome protein, a phosphatase enzyme that is involved in actin polymerization and is found in the trans-Golgi network and INPP5B. Sesquipedalian contains a single PH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 120

>gnl|CDD|241430 cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin homolog (PH) 1 (AtPH1) PH domain

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 208 SGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKAS-EDIKALLSIPVLGYELEALNEQ 264
           S  + +GWL K+ G  + W+R WFVLK   ++ +K    D +    I  L   L   + +
Sbjct: 5   SDPEKAGWLTKQGGSIKTWRRRWFVLKQGKLFYFKDEDPDSEPRGVID-LSDCLTVKSAE 63

Query: 265 DNFKYVFQLK-HQGQDPLVFGADNEQSYERWMKA 297
           +     F  +    +      AD+E+  E W+ A
Sbjct: 64  EATNKEFAFEVSTPERTFYLIADSEKEKEEWISA 97

AtPH1 is expressed in all plant tissue and is proposed to be the plant homolog of human pleckstrin. Pleckstrin consists of two PH domains separated by a linker region, while AtPH has a single PH domain with a short N-terminal extension. AtPH1 binds PtdIns3P specifically and is thought to be an adaptor molecule since it has no obvious catalytic functions. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|241450 cd13296, PH2_MyoX, Myosin X Pleckstrin homology (PH) domain, repeat 2

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 8/49 (16%)

Query: 213 SGWLHKKSG-------RNWKRYWFVLKDQV-MYKYKASEDIKALLSIPV 253
           SGWL+KK G       +NWK  WFVL+D V  Y     E  KAL +I +
Sbjct: 10  SGWLYKKGGGSSTLSRKNWKSRWFVLRDTVLKYYENDQEGAKALGTIDI 58

MyoX, a MyTH-FERM myosin, is a molecular motor that has crucial functions in the transport and/or tethering of integrins in the actin-based extensions known as filopodia, microtubule binding, and in netrin-mediated axon guidance. It functions as a dimer. MyoX walks on bundles of actin, rather than single filaments, unlike the other unconventional myosins. MyoX is present in organisms ranging from humans to choanoflagellates, but not in Drosophila and Caenorhabditis elegans.MyoX consists of a N-terminal motor/head region, a neck made of 3 IQ motifs, and a tail consisting of a coiled-coil domain, a PEST region, 3 PH domains, a myosin tail homology 4 (MyTH4), and a FERM domain at its very C-terminus. The first PH domain in the MyoX tail is a split-PH domain, interupted by the second PH domain such that PH 1a and PH 1b flanks PH 2. The third PH domain (PH 3) follows the PH 1b domain. This cd contains the second PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 111

>gnl|CDD|241453 cd13299, PH2_PH_fungal, Fungal proteins Pleckstrin homology (PH) domain, repeat 2

 Score = 48.0 bits (115), Expect = 2e-07
 Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 215 WLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQD----NFKYV 270
            L KK    WK+YW VL+++ +  YK   +   +  IP+   ++  + E D    + K+ 
Sbjct: 14  VLKKKGVNQWKKYWLVLRNRSLSFYKDQSEYSPVKIIPI--DDIIDVVELDPLSKSKKWC 71

Query: 271 FQLKHQGQDPLVFGADNEQSYERWMKAMR 299
            Q+    +  + F AD+E+S  +W+ A++
Sbjct: 72  LQIITPEK-RIRFCADDEESLIKWLGALK 99

The functions of these fungal proteins are unknown, but they all contain 2 PH domains. This cd represents the second PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 102

>gnl|CDD|241369 cd13215, PH-GRAM1_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 1

 Score = 47.6 bits (114), Expect = 6e-07
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 213 SGWLHKKSGRN--WKRYWFVLKDQVMYKYKASEDI 245
           SG+L K+  R   + RYWFVLK  V+  Y++S D+
Sbjct: 32  SGYLSKRGKRTPRYNRYWFVLKGDVLSWYRSSTDL 66

ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 130

>gnl|CDD|241462 cd13308, PH_3BP2, SH3 domain-binding protein 2 Pleckstrin homology (PH) domain

 Score = 46.6 bits (111), Expect = 8e-07
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 8/98 (8%)

Query: 212 HSGWLHKKSGR-----NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ-D 265
           HSG+L KK G       W   + ++    +Y +K S+  K      + GY   A  E   
Sbjct: 11  HSGYLTKKGGSQKQLLKWPLRYVIIHKGCVYYFKNSQSAKPKGVFSLNGYNRRAAEETTS 70

Query: 266 NFKYVFQLKHQGQD--PLVFGADNEQSYERWMKAMREA 301
             K+VF++ H  +D     F A +E   + WM+++R+ 
Sbjct: 71  KKKFVFKIIHLSKDHRTWYFSAKSEDEMKEWMESLRKE 108

SH3BP2 (the gene that encodes the adaptor protein 3BP2), HD, ITU, IT10C3, and ADD1 are located near the Huntington's Disease Gene on Human Chromosome 4pl6.3. SH3BP2 lies in a region that is often missing in individuals with Wolf-Hirschhorn syndrome (WHS). Gain of function mutations in SH3BP2 causes enhanced B-cell antigen receptor (BCR)-mediated activation of nuclear factor of activated T cells (NFAT), resulting in a rare, genetic disorder called cherubism. This results in an increase in the signaling complex formation with Syk, phospholipase C-gamma2 (PLC-gamma2), and Vav1. It was recently discovered that Tankyrase regulates 3BP2 stability through ADP-ribosylation and ubiquitylation by the E3-ubiquitin ligase. Cherubism mutations uncouple 3BP2 from Tankyrase-mediated protein destruction, which results in its stabilization and subsequent hyperactivation of the Src, Syk, and Vav signaling pathways. SH3BP2 is also a potential negative regulator of the abl oncogene. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 113

>gnl|CDD|241530 cd13379, PH_RhoGap24, Rho GTPase activating protein 24 Pleckstrin homology (PH) domain

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 12/98 (12%)

Query: 214 GWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYEL--EALNEQDNFKY 269
           GWL K+ G  + W   WFVLK   +Y +K  ++ K L +I + G  +     NE++  K+
Sbjct: 7   GWLRKQGGFVKTWHTRWFVLKGDQLYYFKDEDETKPLGTIFLPGNRVTEHPCNEEEPGKF 66

Query: 270 VFQLKHQG--------QDPLVFGADNEQSYERWMKAMR 299
           +F++   G         +  +  A  +   E W+K++R
Sbjct: 67  LFEVVPGGDRERMTANHETYLLMASTQNDMEDWVKSIR 104

RhoGap24 (also called ARHGAP24, p73RhoGAp, and Filamin-A-associated RhoGAP) like other RhoGAPs are involved in cell polarity, cell morphology and cytoskeletal organization. They act as GTPase activators for the Rac-type GTPases by converting them to an inactive GDP-bound state and control actin remodeling by inactivating Rac downstream of Rho leading to suppress leading edge protrusion and promotes cell retraction to achieve cellular polarity and are able to suppress RAC1 and CDC42 activity in vitro. Overexpression of these proteins induces cell rounding with partial or complete disruption of actin stress fibers and formation of membrane ruffles, lamellipodia, and filopodia. Members here contain an N-terminal PH domain followed by a RhoGAP domain and either a BAR or TATA Binding Protein (TBP) Associated Factor 4 (TAF4) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241452 cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin homology (PH) domain, repeat 1

 Score = 45.3 bits (108), Expect = 2e-06
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 25/104 (24%)

Query: 212 HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKY 269
            SGWL K+S   + WK+ WFVL+   +  YK  ++ K    I +   EL A+    + K 
Sbjct: 8   KSGWLLKRSRKTKTWKKRWFVLRPCQLSYYKDEKEYKLRRVINL--SELTAVAPLKDKKR 65

Query: 270 VFQLKHQGQDPLVFG-----------ADNEQSYERWMKAMREAT 302
                       VF            A +E+    W++A+RE +
Sbjct: 66  KN----------VFAIYTPSKNYHFQASSEKDANEWVEAIREES 99

The functions of these fungal proteins are unknown, but they all contain 2 PH domains. This cd represents the first PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|241529 cd13378, PH_RhoGAP2, Rho GTPase activating protein 2 Pleckstrin homology (PH) domain

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 14/101 (13%)

Query: 213 SGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEAL--NEQDNFK 268
           +GWL K+    +NW++ WFVL+   ++ YK  E+ K    I + G ++  L  N ++  K
Sbjct: 6   AGWLKKQRSIMKNWQQRWFVLRGDQLFYYKDEEETKPQGCISLQGSQVNELPPNPEEPGK 65

Query: 269 YVFQLKHQGQ----------DPLVFGADNEQSYERWMKAMR 299
           ++F++   G           +  +  A+++   E W+KA+R
Sbjct: 66  HLFEILPGGAGDREKVPMNHEAFLLMANSQSDMEDWVKAIR 106

RhoGAP2 (also called RhoGap22 or ArhGap22) are involved in cell polarity, cell morphology and cytoskeletal organization. They activate a GTPase belonging to the RAS superfamily of small GTP-binding proteins. The encoded protein is insulin-responsive, is dependent on the kinase Akt, and requires the Akt-dependent 14-3-3 binding protein which binds sequentially to two serine residues resulting in regulation of cell motility. Members here contain an N-terminal PH domain followed by a RhoGAP domain and either a BAR or TATA Binding Protein (TBP) Associated Factor 4 (TAF4) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 116

>gnl|CDD|241290 cd01259, PH_APBB1IP, Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein pleckstrin homology (PH) domain

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 20/107 (18%)

Query: 211 QHSGWLH-KKSGRN-WKRYWFVLKDQVMY-----KYKASEDIKALLSIPVLGYEL-EALN 262
           +  G+L+ K+ G+  WK+ +FVL+   +Y     K K S D++ L       Y +   LN
Sbjct: 7   EIEGFLYLKEDGKKSWKKRYFVLRASGLYYSPKGKSKESRDLQCLAQFD--DYNVYTGLN 64

Query: 263 EQDNFK----YVFQLKHQGQDPL------VFGADNEQSYERWMKAMR 299
            +  +K    + F LK                A++EQS   W+ A+R
Sbjct: 65  GKKKYKAPTDFGFCLKPNKVQEKGSKDIKYLCAEDEQSRTCWLTAIR 111

APBB1IP consists of a Ras-associated (RA) domain, a PH domain, a family-specific BPS region, and a C-terminal SH2 domain. Grb7, Grb10 and Grb14 are paralogs that are also present in this hierarchy. These adapter proteins bind a variety of receptor tyrosine kinases, including the insulin and insulin-like growth factor-1 (IGF1) receptors. Grb10 and Grb14 are important tissue-specific negative regulators of insulin and IGF1 signaling based and may contribute to type 2 (non-insulin-dependent) diabetes in humans. RA-PH function as a single structural unit and is dimerized via a helical extension of the PH domain. The PH domain here are proposed to bind phosphoinositides non-cannonically ahd are unlikely to bind an activated GTPase. The tandem RA-PH domains are present in a second adapter-protein family, MRL proteins, Caenorhabditis elegans protein MIG-1012, the mammalian proteins RIAM and lamellipodin and the Drosophila melanogaster protein Pico12, all of which are Ena/VASP-binding proteins involved in actin-cytoskeleton rearrangement. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 124

>gnl|CDD|241283 cd01252, PH_GRP1-like, General Receptor for Phosphoinositides-1-like Pleckstrin homology (PH) domain

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 7/53 (13%)

Query: 212 HSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN 262
             GWL K  GR  +WKR WF+L D  +Y ++ + D +    IP     LE L+
Sbjct: 5   REGWLLKLGGRVKSWKRRWFILTDNCLYYFEYTTDKEPRGIIP-----LENLS 52

GRP1/cytohesin3 and the related proteins ARNO (ARF nucleotide-binding site opener)/cytohesin-2 and cytohesin-1 are ARF exchange factors that contain a pleckstrin homology (PH) domain thought to target these proteins to cell membranes through binding polyphosphoinositides. The PH domains of all three proteins exhibit relatively high affinity for PtdIns(3,4,5)P3. Within the Grp1 family, diglycine (2G) and triglycine (3G) splice variants, differing only in the number of glycine residues in the PH domain, strongly influence the affinity and specificity for phosphoinositides. The 2G variants selectively bind PtdIns(3,4,5)P3 with high affinity,the 3G variants bind PtdIns(3,4,5)P3 with about 30-fold lower affinity and require the polybasic region for plasma membrane targeting. These ARF-GEFs share a common, tripartite structure consisting of an N-terminal coiled-coil domain, a central domain with homology to the yeast protein Sec7, a PH domain, and a C-terminal polybasic region. The Sec7 domain is autoinhibited by conserved elements proximal to the PH domain. GRP1 binds to the DNA binding domain of certain nuclear receptors (TRalpha, TRbeta, AR, ER, but not RXR), and can repress thyroid hormone receptor (TR)-mediated transactivation by decreasing TR-complex formation on thyroid hormone response elements. ARNO promotes sequential activation of Arf6, Cdc42 and Rac1 and insulin secretion. Cytohesin acts as a PI 3-kinase effector mediating biological responses including cell spreading and adhesion, chemotaxis, protein trafficking, and cytoskeletal rearrangements, only some of which appear to depend on their ability to activate ARFs. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 118

>gnl|CDD|241296 cd01265, PH_TBC1D2A, TBC1 domain family member 2A pleckstrin homology (PH) domain

 Score = 41.5 bits (98), Expect = 4e-05
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 19/99 (19%)

Query: 211 QHSGWLHKKSG----RNWKRYWFVLKD---QVMYKYKASEDIKALLSIPVLG----YELE 259
           +  G+L+K       + WK  WFV  +   Q+ Y Y++ +DI  L SI + G    Y+ E
Sbjct: 1   RLCGYLNKLETKGLLKTWKSRWFVFDERKCQLYY-YRSPQDITPLGSIDLSGAAFSYDPE 59

Query: 260 ALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAM 298
           A          F++   G+   +  A + Q+   W++ +
Sbjct: 60  AEKGT------FEIHTPGRV-YILKASDRQAMLYWLQEL 91

TBC1D2A (also called PARIS-1/Prostate antigen recognized and identified by SEREX 1 and ARMUS) contains a PH domain and a TBC-type GTPase catalytic domain. TBC1D2A integrates signaling between Arf6, Rac1, and Rab7 during junction disassembly. Activated Rac1 recruits TBC1D2A to locally inactivate Rab7 via its C-terminal TBC/RabGAP domain and facilitate E-cadherin degradation in lysosomes. The TBC1D2A PH domain mediates localization at cell-cell contacts and coprecipitates with cadherin complexes. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 101

>gnl|CDD|241460 cd13306, PH1_AFAP, Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1

 Score = 40.9 bits (96), Expect = 7e-05
 Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 216 LHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFK-YVFQLK 274
             KK    W +   V+KD  +  YK+S+D +  L + +LG  +  + +    K +  ++ 
Sbjct: 19  WRKKWLGQWAKQLCVIKDNRLLCYKSSKDQQPQLDLNLLGCNVIYVPKDGRRKKHELKIT 78

Query: 275 HQGQDPLVFGADNEQSYERWMKAMREAT 302
             G + LV    +++  E W+K +RE +
Sbjct: 79  PPGAEALVLAVQSKEQAEEWLKVIREVS 106

There are 3 members of the AFAP family of adaptor proteins: AFAP1, AFAP1L1, and AFAP1L2/XB130. AFAP1 is a cSrc binding partner and actin cross-linking protein. AFAP1L1 is thought to play a similar role to AFAP1 in terms of being an actin cross-linking protein, but it preferentially binds to cortactin and not cSrc, thereby playing a role in invadosome formation. AFAP1L2 is a cSrc binding protein, but does not bind to actin filaments. AFAP1L2 acts as an intermediary between the RET/PTC kinase and PI-3kinase pathway in the thyroid. The AFAPs share a similar structure of a SH3 binding motif, 3 SH2 binding motifs, 2 PH domains, a coiled-coil region corresponding to the AFAP1 leucine zipper, and an actin binding domain. The amino terminal PH1 domain of AFAP1 has been known to function in intra-molecular regulation of AFAP1. In addition, the PH1 domain is a binding partner for PKCa and phospholipids. This cd is the first PH domain of AFAP. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 107

>gnl|CDD|241284 cd01253, PH_ARHGAP21-like, ARHGAP21 and related proteins pleckstrin homology (PH) domain

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 34/114 (29%)

Query: 214 GWLHKK----------SGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE 263
           GWLH K          S R+WK+ W VL+   +Y YK   +    LS         A + 
Sbjct: 4   GWLHFKQSVLEKGKRASDRSWKQVWAVLRGHSLYLYKDKRETSPALSA--------AEDS 55

Query: 264 QDNF----------------KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
           +                   K VF+L        +F A++      W+KA++E 
Sbjct: 56  EQRIDIRSCIVDIAYSYTKRKNVFRLTTSDGSEYLFQAEDRDDMLGWIKAIQEN 109

ARHGAP family genes encode Rho/Rac/Cdc42-like GTPase activating proteins with a RhoGAP domain. These proteins functions as a GTPase-activating protein (GAP) for RHOA and CDC42. ARHGAP21 controls the Arp2/3 complex and F-actin dynamics at the Golgi complex by regulating the activity of the small GTPase Cdc42. It is recruited to the Golgi by to GTPase, ARF1, through its PH domain and its helical motif. It is also required for CTNNA1 recruitment to adherens junctions. ARHGAP21 and it related proteins all contains a PH domain and a RhoGAP domain. Some of the members have additional N-terminal domains including PDZ, SH3, and SPEC. The ARHGAP21 PH domain interacts with the GTPbound forms of both ARF1 and ARF6 ARF-binding domain/ArfBD. The members here include: ARHGAP15, ARHGAP21, and ARHGAP23. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 113

>gnl|CDD|241404 cd13250, PH_ACAP, ArfGAP with coiled-coil, ankyrin repeat and PH domains Pleckstrin homology (PH) domain

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 15 FSVIAISRSFTLRARSANERLEWIDAIQTAI 45
          F V++ ++S+ L+A S  +R  WI AIQ AI
Sbjct: 63 FEVVSPTKSYMLQAESEEDRQAWIQAIQAAI 93

ACAP (also called centaurin beta) functions both as a Rab35 effector and as an Arf6-GTPase-activating protein (GAP) by which it controls actin remodeling and membrane trafficking. ACAP contain an NH2-terminal bin/amphiphysin/Rvs (BAR) domain, a phospholipid-binding domain, a PH domain, a GAP domain, and four ankyrin repeats. The AZAPs constitute a family of Arf GAPs that are characterized by an NH2-terminal pleckstrin homology (PH) domain and a central Arf GAP domain followed by two or more ankyrin repeats. On the basis of sequence and domain organization, the AZAP family is further subdivided into four subfamilies: 1) the ACAPs contain an NH2-terminal bin/amphiphysin/Rvs (BAR) domain (a phospholipid-binding domain that is thought to sense membrane curvature), a single PH domain followed by the GAP domain, and four ankyrin repeats; 2) the ASAPs also contain an NH2-terminal BAR domain, the tandem PH domain/GAP domain, three ankyrin repeats, two proline-rich regions, and a COOH-terminal Src homology 3 domain; 3) the AGAPs contain an NH2-terminal GTPase-like domain (GLD), a split PH domain, and the GAP domain followed by four ankyrin repeats; and 4) the ARAPs contain both an Arf GAP domain and a Rho GAP domain, as well as an NH2-terminal sterile-a motif (SAM), a proline-rich region, a GTPase-binding domain, and five PH domains. PMID 18003747 and 19055940 Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 98

>gnl|CDD|241436 cd13282, PH1_PLEKHH1_PLEKHH2, Pleckstrin homology (PH) domain containing, family H (with MyTH4 domain) members 1 and 2 (PLEKHH1) PH domain, repeat 1

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 213 SGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDI--KALLSIPVLGY 256
           +G+L K  G+   WKR WFVLK+  ++ YK+  D+  K    I + G 
Sbjct: 2   AGYLTKLGGKVKTWKRRWFVLKNGELFYYKSPNDVIRKPQGQIALDGS 49

PLEKHH1 and PLEKHH2 (also called PLEKHH1L) are thought to function in phospholipid binding and signal transduction. There are 3 Human PLEKHH genes: PLEKHH1, PLEKHH2, and PLEKHH3. There are many isoforms, the longest of which contain a FERM domain, a MyTH4 domain, two PH domains, a peroximal domain, a vacuolar domain, and a coiled coil stretch. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 96

>gnl|CDD|241270 cd01237, PH_fermitin, Fermitin family pleckstrin homology (PH) domain

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 218 KKSGRNWKRYWFVLKDQVMYKYKASEDI--KALLSIPVLGYELEALNEQDNFKYVFQLK- 274
           K + + +KRYWFV KD  +  YK+ E+     +  I + G E+         K+  +L  
Sbjct: 14  KFTLKGFKRYWFVFKDTHLSYYKSKEESNGAPIQQINLKGCEVTPDVNVSQGKFGIKLLI 73

Query: 275 --HQGQDPLVFGADNEQSYERWMKAMREA 301
              +G + +    D+E+ Y +WM A R A
Sbjct: 74  PSPEGMNEVWLRCDSEEQYAKWMAACRLA 102

Fermitin functions as a mediator of integrin inside-out signalling. The recruitment of Fermitin proteins and Talin to the membrane mediates the terminal event of integrin signalling, via interaction with integrin beta subunits. Fermatin has FERM domain interrupted with a pleckstrin homology (PH) domain. Fermitin family homologs (Fermt1, 2, and 3, also known as Kindlins) are each encoded by a different gene. In mammalian studies, Fermt1 is generally expressed in epithelial cells, Fermt2 is expressed inmuscle tissues, and Fermt3 is expressed in hematopoietic lineages. Specifically Fermt2 is expressed in smooth and striated muscle tissues in mice and in the somites (a trunk muscle precursor) and neural crest in Xenopus embryos. As such it has been proposed that Fermt2 plays a role in cardiomyocyte and neural crest differentiation. Expression of mammalian Fermt3 is associated with hematopoietic lineages: the anterior ventral blood islands, vitelline veins, and early myeloid cells. In Xenopus embryos this expression, also include the notochord and cement gland. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 110

>gnl|CDD|241426 cd13272, PH_INPP4A_INPP4B, Type I inositol 3,4-bisphosphate 4-phosphatase and Type II inositol 3,4-bisphosphate 4-phosphatase Pleckstrin homology (PH) domain

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 211 QHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYV 270
           Q   +  +KS    +R WF L+  +++ +K++E       + VL        E D   + 
Sbjct: 5   QMGFF--RKSEVFKER-WFKLRGNLLFYFKSNEPGSEPAGVIVLENCRVQREEPDPGGFA 61

Query: 271 FQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
           F L  + +    F   +E+  + W++A+++A+
Sbjct: 62  FSLVFKDEKKYRFSCRSEEERDEWIEAIKQAS 93

INPP4A (also called Inositol polyphosphate 4-phosphatase type I) and INPP4B (also called Inositol polyphosphate 4-phosphatase type II) both catalyze the hydrolysis of the 4-position phosphate of phosphatidylinositol 3,4-bisphosphate and inositol 1,3,4-trisphosphate. They differ in that INPP4A additionally catalyzes the hydrolysis of the 4-position phosphate of inositol 3,4-bisphosphate, while INPP4B catalyzes the hydrolysis of the 4-position phosphate of inositol 1,4-bisphosphate. They both have a single PH domain followed by a C2 domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 116

>gnl|CDD|241392 cd13238, PH2_FGD4_insect-like, FYVE, RhoGEF and PH domain containing/faciogenital dysplasia protein 4 pleckstrin homology (PH) domain, C-terminus, in insect and related arthropods

 Score = 38.0 bits (88), Expect = 6e-04
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 12/96 (12%)

Query: 213 SGWLHKKS--GRNWKRYWFVLK-DQVMYKYKASEDIKALLSIPVLGY---ELEALNEQDN 266
           SG+L  K+   + W R WF L  D V+Y YK+ ED  AL + PV G+     E  + +D 
Sbjct: 2   SGYLKLKTNGRKTWIRRWFALHPDFVLYSYKSEEDKLALTATPVPGFLVTLGEKGSAEDP 61

Query: 267 FK-----YVFQLKHQGQDPLVFGADNEQSYERWMKA 297
                    F++ H  +    F A++    ++W+ A
Sbjct: 62  LNDKDRIRAFKMFHV-KKSYYFQANDGDEKDKWVHA 96

In general, FGDs have a RhoGEF (DH) domain, followed by an N-terminal PH domain, a FYVE domain and a C-terminal PH domain. All FGDs are guanine nucleotide exchange factors that activates the Rho GTPase Cdc42, an important regulator of membrane trafficking. The RhoGEF domain is responsible for GEF catalytic activity, while the N-terminal PH domain is involved in intracellular targeting of the DH domain. FGD4 is one of the genes associated with Charcot-Marie-Tooth neuropathy type 4 (CMT4), a group of progressive motor and sensory axonal and demyelinating neuropathies that are distinguished from other forms of CMT by autosomal recessive inheritance. Those affected have distal muscle weakness and atrophy associated with sensory loss and, frequently, pes cavus foot deformity. This cd contains insects, crustaceans, and chelicerates. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 96

>gnl|CDD|241271 cd01238, PH_Btk, Bruton's tyrosine kinase pleckstrin homology (PH) domain

 Score = 38.7 bits (91), Expect = 7e-04
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 13/100 (13%)

Query: 213 SGWLHKKS-GR------NWKRYWFVLKDQVM--YKYKASEDIKALLSIP---VLGYELEA 260
            G L K+S G+      N+K  WFVL    +  Y+    +  K   SI    +   E   
Sbjct: 2   EGLLVKRSQGKKRFGPVNYKERWFVLTKSSLSYYEGDGGKRGKEKGSIDLSKIKCVEEVK 61

Query: 261 LNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMRE 300
            +     KY FQ+ +     L   A +E+  + W+ A+R+
Sbjct: 62  DDASFERKYPFQVVY-DDYTLYVFAPSEEDRDEWILALRK 100

Btk is a member of the Tec family of cytoplasmic protein tyrosine kinases that includes BMX, IL2-inducible T-cell kinase (Itk) and Tec. Btk plays a role in the maturation of B cells. Tec proteins general have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. The Btk PH domain binds phosphatidylinositol 3,4,5-trisphosphate and responds to signalling via phosphatidylinositol 3-kinase. The PH domain is also involved in membrane anchoring which is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain. This results in severe human immunodeficiency known as X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice.PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 140

>gnl|CDD|241421 cd13267, PH_DOCK-D, Dedicator of cytokinesis-D subfamily Pleckstrin homology (PH) domain

 Score = 38.0 bits (89), Expect = 0.001
 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 28/122 (22%)

Query: 205 ANDSGSQHSGWLHKK----------SGRNWKRYWFVLKDQV-------MYKYKASEDIKA 247
           + +SG    G+L+K           + +++KR +F LK  V        YK + S++ K 
Sbjct: 1   SGESGITKEGYLYKGPENSSMFISLAMKSFKRRFFHLKQLVDGSYILEFYKDEKSKEAKG 60

Query: 248 LLSIPVLGYELEALNE-QDNFK---YVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303
            +        L++      N K   + F+L+ Q     V  A++E   + W+  + +   
Sbjct: 61  TIY-------LDSCTGVVQNSKRRKFCFELRMQDGKSYVLAAESESEMDDWISKLNKILQ 113

Query: 304 LS 305
           ++
Sbjct: 114 IN 115

DOCK-D subfamily (also called Zizimin subfamily) consists of Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2. DOCK-D has a N-terminal DUF3398 domain, a PH-like domain, a Dock Homology Region 1, DHR1 (also called CZH1), a C2 domain, and a C-terminal DHR2 domain (also called CZH2). Zizimin1 is enriched in the brain, lung, and kidney; zizimin2 is found in B and T lymphocytes, and zizimin3 is enriched in brain, lung, spleen and thymus. Zizimin1 functions in autoinhibition and membrane targeting. Zizimin2 is an immune-related and age-regulated guanine nucleotide exchange factor, which facilitates filopodial formation through activation of Cdc42, which results in activation of cell migration. No function has been determined for Zizimin3 to date. The N-terminal half of zizimin1 binds to the GEF domain through three distinct areas, including CZH1, to inhibit the interaction with Cdc42. In addition its PH domain binds phosphoinositides and mediates zizimin1 membrane targeting. DOCK is a family of proteins involved in intracellular signalling networks. They act as guanine nucleotide exchange factors for small G proteins of the Rho family, such as Rac and Cdc42. There are 4 subfamilies of DOCK family proteins based on their sequence homology: A-D. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 125

>gnl|CDD|241268 cd01235, PH_Sbf1_hMTMR5, Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 6/40 (15%)

Query: 212 HSGWLHKKSG--RNWKRYWFVL---KDQVMYKYKASEDIK 246
             G+L+K+    + WK+ WFVL   K Q+ Y Y++ ED K
Sbjct: 5   CEGYLYKRGALLKGWKQRWFVLDLTKHQLRY-YESKEDTK 43

Sbf1 is a myotubularin-related pseudo-phosphatase. Both Sbf1 and myotubularin interact with the SET domains of Hrx and other epigenetic regulatory proteins, but Sbf1 lacks phosphatase activity due to several amino acid changes in its structurally preserved catalytic pocket. It contains pleckstrin (PH), GEF, and myotubularin homology domains that are thought to be responsible for signaling and growth control. Sbf1 functions as an inhibitor of cellular growth. The N-terminal GEF homology domain serves to inhibit the transforming effects of Sbf1. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|241414 cd13260, PH_RASA1, RAS p21 protein activator (GTPase activating protein) 1 Pleckstrin homology (PH) domain

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 14/100 (14%)

Query: 212 HSGWLHKKSGRN--WKRYWFVL--KDQVMYKYKASEDIKAL----LSIPVLGYELEALNE 263
             G+L KKSG+N  WK  +FVL   +Q +Y ++  +  K      LS   +    ++L  
Sbjct: 5   KKGYLLKKSGKNKKWKNLYFVLEGAEQHLYFFENEKRTKPKGLIDLSYSSVYPVHDSLFG 64

Query: 264 QDNFKYVFQLKHQGQDPLV---FGADNEQSYERWMKAMRE 300
           + N    FQ+  +  +        AD  +  + WMKA+R 
Sbjct: 65  RPN---CFQIVVRALNESTIYYLCADTAELAQDWMKALRA 101

RASA1 (also called RasGap1 or p120) is a member of the RasGAP family of GTPase-activating proteins. RASA1 contains N-terminal SH2-SH3-SH2 domains, followed by two C2 domains, a PH domain, a RasGAP domain, and a BTK domain. Splice variants lack the N-terminal domains. It is a cytosolic vertebrate protein that acts as a suppressor of RAS via its C-terminal GAP domain function, enhancing the weak intrinsic GTPase activity of RAS proteins resulting in the inactive GDP-bound form of RAS, allowing control of cellular proliferation and differentiation. Additionally, it is involved in mitogenic signal transmission towards downstream interacting partners through its N-terminal SH2-SH3-SH2 domains. RASA1 interacts with a number of proteins including: G3BP1, SOCS3, ANXA6, Huntingtin, KHDRBS1, Src, EPHB3, EPH receptor B2, Insulin-like growth factor 1 receptor, PTK2B, DOK1, PDGFRB, HCK, Caveolin 2, DNAJA3, HRAS, GNB2L1 and NCK1. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 103

>gnl|CDD|241427 cd13273, PH_SWAP-70, Switch-associated protein-70 Pleckstrin homology (PH) domain

 Score = 37.3 bits (87), Expect = 0.001
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 5   LPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQH 51
           LP  E     F V    +++ L A     R EWI AIQTAI+ +++ 
Sbjct: 62  LPDREGKKCRFCVKTPDKTYELSASDHKTRQEWIQAIQTAIRLSQEG 108

SWAP-70 (also called Differentially expressed in FDCP 6/DEF-6 or IRF4-binding protein) functions in cellular signal transduction pathways (in conjunction with Rac), regulates cell motility through actin rearrangement, and contributes to the transformation and invasion activity of mouse embryo fibroblasts. Metazoan SWAP-70 is found in B lymphocytes, mast cells, and in a variety of organs. Metazoan SWAP-70 contains an N-terminal EF-hand motif, a centrally located PH domain, and a C-terminal coiled-coil domain. The PH domain of Metazoan SWAP-70 contains a phosphoinositide-binding site and a nuclear localization signal (NLS), which localize SWAP-70 to the plasma membrane and nucleus, respectively. The NLS is a sequence of four Lys residues located at the N-terminus of the C-terminal a-helix; this is a unique characteristic of the Metazoan SWAP-70 PH domain. The SWAP-70 PH domain binds PtdIns(3,4,5)P3 and PtdIns(4,5)P2 embedded in lipid bilayer vesicles. There are additional plant SWAP70 proteins, but these are not included in this hierarchy. Rice SWAP70 (OsSWAP70) exhibits GEF activity toward the its Rho GTPase, OsRac1, and regulates chitin-induced production of reactive oxygen species and defense gene expression in rice. Arabidopsis SWAP70 (AtSWAP70) plays a role in both PAMP- and effector-triggered immunity. Plant SWAP70 contains both DH and PH domains, but their arrangement is the reverse of that in typical DH-PH-type Rho GEFs, wherein the DH domain is flanked by a C-terminal PH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 110

>gnl|CDD|241409 cd13255, PH_TAAP2-like, Tandem PH-domain-containing protein 2 Pleckstrin homology (PH) domain

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 212 HSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPV 253
            +G+L KK  R   WK+ WFVL+   +  YK  ++ + L  I +
Sbjct: 8   KAGYLEKKGERRKTWKKRWFVLRPTKLAYYKNDKEYRLLRLIDL 51

The binding of TAPP2 (also called PLEKHA2) adaptors to PtdIns(3,4)P(2), but not PI(3,4, 5)P3, function as negative regulators of insulin and PI3K signalling pathways (i.e. TAPP/utrophin/syntrophin complex). TAPP2 contains two sequential PH domains in which the C-terminal PH domain specifically binds PtdIns(3,4)P2 with high affinity. The N-terminal PH domain does not interact with any phosphoinositide tested. They also contain a C-terminal PDZ-binding motif that interacts with several PDZ-binding proteins, including PTPN13 (known previously as PTPL1 or FAP-1) as well as the scaffolding proteins MUPP1 (multiple PDZ-domain-containing protein 1), syntrophin and utrophin. The members here are most sequence similar to TAPP2 proteins, but may not be actual TAPP2 proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 110

>gnl|CDD|241253 cd01218, PH_Phafin2-like, Phafin2 (also called EAPF, FLJ13187, ZFYVE18 or PLEKHF2) Pleckstrin Homology (PH) domain

 Score = 37.2 bits (87), Expect = 0.002
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 5   LPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAI 41
           L  T +  N + +I+  +SF + A +A E+ EW+D I
Sbjct: 84  LEDTGELKNGWQIISPKKSFVVYAATATEKSEWMDHI 120

Phafin2 is differentially expressed in the liver cancer cell and regulates the structure and function of the endosomes through Rab5-dependent processes. Phafin2 modulates the cell's response to extracellular stimulation by modulating the receptor density on the cell surface. Phafin2 contains a PH domain and a FYVE domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 123

>gnl|CDD|241451 cd13297, PH3_MyoX-like, Myosin X-like Pleckstrin homology (PH) domain, repeat 3

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 202 EVTANDSGSQHSGWLHKKSG-RNW---KRYWFVLKDQVMYKYKASED 244
           +    D      GWL K+ G       K+ WFVL    +  YK+SE 
Sbjct: 5   QTDEGDQEVIEKGWLLKEGGKGGNLTKKKRWFVLTPNSLDYYKSSER 51

MyoX, a MyTH-FERM myosin, is a molecular motor that has crucial functions in the transport and/or tethering of integrins in the actin-based extensions known as filopodia, microtubule binding, and in netrin-mediated axon guidance. It functions as a dimer. MyoX walks on bundles of actin, rather than single filaments, unlike the other unconventional myosins. MyoX is present in organisms ranging from humans to choanoflagellates, but not in Drosophila and Caenorhabditis elegans.MyoX consists of a N-terminal motor/head region, a neck made of 3 IQ motifs, and a tail consisting of a coiled-coil domain, a PEST region, 3 PH domains, a myosin tail homology 4 (MyTH4), and a FERM domain at its very C-terminus. The first PH domain in the MyoX tail is a split-PH domain, interupted by the second PH domain such that PH 1a and PH 1b flanks PH 2. The third PH domain (PH 3) follows the PH 1b domain. This cd contains the third MyoX PH repeat. PLEKHH3/Pleckstrin homology (PH) domain containing, family H (with MyTH4 domain) member 3 is also part of this CD and like MyoX contains a FERM domain, a MyTH4 domain, and a single PH domain. Not much is known about the function of PLEKHH3. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 123

>gnl|CDD|241455 cd13301, PH1_Pleckstrin_2, Pleckstrin 2 Pleckstrin homology (PH) domain, repeat 1

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 214 GWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEA-LNEQDNFKYV 270
           G+L KK     NWK  WFVL +  +  YK   D      I + G  + +   E +    V
Sbjct: 7   GFLVKKGHVVNNWKARWFVLLEDKLEYYKKKTDSSPKGMILLKGCTITSPCLEYEKRPLV 66

Query: 271 FQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303
           F+L           A + +  + W K + +A T
Sbjct: 67  FKLTTAKGQDHFLQACSREERDAWAKDITKAIT 99

Pleckstrin is a protein found in platelets. This name is derived from platelet and leukocyte C kinase substrate and the KSTR string of amino acids. Pleckstrin 2 contains two PH domains and a DEP (dishvelled, egl-10, and pleckstrin) domain. Unlike pleckstrin 1, pleckstrin 2 does not contain obvious sites of PKC phosphorylation. Pleckstrin 2 plays a role in actin rearrangement, large lamellipodia and peripheral ruffle formation, and may help orchestrate cytoskeletal arrangement. The PH domains of pleckstrin 2 are thought to contribute to lamellipodia formation. This cd contains the first PH domain repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 108

>gnl|CDD|241254 cd01219, PH1_FGD1, FYVE, RhoGEF and PH domain containing/faciogenital dysplasia protein 1 pleckstrin homology (PH), N-terminal domain

 Score = 36.5 bits (84), Expect = 0.003
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 15  FSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSF 55
           F V    RS  L+AR+  E+ +WI AI+  I  +EQ L +F
Sbjct: 67  FLVSGKQRSLELQARTEEEKKDWIQAIEATINRHEQTLETF 107

In general, FGDs have a RhoGEF (DH) domain, followed by an N-terminal PH domain, a FYVE domain and a C-terminal PH domain. All FGDs are guanine nucleotide exchange factors that activates the Rho GTPase Cdc42, an important regulator of membrane trafficking. The RhoGEF domain is responsible for GEF catalytic activity, while the N-terminal PH domain is involved in intracellular targeting of the DH domain. Mutations in the FGD1 gene are responsible for the X-linked disorder known as faciogenital dysplasia (FGDY). Both FGD1 and FGD3 are targeted by the ubiquitin ligase SCF(FWD1/beta-TrCP) upon phosphorylation of two serine residues in its DSGIDS motif and subsequently degraded by the proteasome. However, FGD1 and FGD3 induced significantly different morphological changes in HeLa Tet-Off cells and while FGD1 induced long finger-like protrusions, FGD3 induced broad sheet-like protrusions when the level of GTP-bound Cdc42 was significantly increased by the inducible expression of FGD3. They also reciprocally regulated cell motility in inducibly expressed in HeLa Tet-Off cells, FGD1 stimulated cell migration while FGD3 inhibited it. FGD1 and FGD3 therefore play different roles to regulate cellular functions, even though their intracellular levels are tightly controlled by the same destruction pathway through SCF(FWD1/beta-TrCP). PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 107

>gnl|CDD|241538 cd13387, PH1_FGD3, FYVE, RhoGEF and PH domain containing/faciogenital dysplasia protein 3 pleckstrin homology (PH), N-terminal domain

 Score = 36.1 bits (83), Expect = 0.004
 Identities = 15/41 (36%), Positives = 25/41 (60%)

Query: 15  FSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSF 55
           F +    RS  L+AR+  E+ EWI  IQ  I++++Q+  +F
Sbjct: 67  FIITGKKRSLELQARTEEEKKEWIQVIQATIEKHKQNSETF 107

In general, FGDs have a RhoGEF (DH) domain, followed by an N-terminal PH domain, a FYVE domain and a C-terminal PH domain. All FGDs are guanine nucleotide exchange factors that activates the Rho GTPase Cdc42, an important regulator of membrane trafficking. The RhoGEF domain is responsible for GEF catalytic activity, while the N-terminal PH domain is involved in intracellular targeting of the DH domain. Both FGD1 and FGD3 are targeted by the ubiquitin ligase SCF(FWD1/beta-TrCP) upon phosphorylation of two serine residues in its DSGIDS motif and subsequently degraded by the proteasome. However, FGD1 and FGD3 induced significantly different morphological changes in HeLa Tet-Off cells and while FGD1 induced long finger-like protrusions, FGD3 induced broad sheet-like protrusions when the level of GTP-bound Cdc42 was significantly increased by the inducible expression of FGD3. They also reciprocally regulated cell motility in inducibly expressed in HeLa Tet-Off cells, FGD1 stimulated cell migration while FGD3 inhibited it. FGD1 and FGD3 therefore play different roles to regulate cellular functions, even though their intracellular levels are tightly controlled by the same destruction pathway through SCF(FWD1/beta-TrCP). PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 107

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	305
KOG4424|consensus	623		99.97
KOG1729|consensus	288		99.94
KOG1117|consensus	1186		99.87
cd01260	96	PH_CNK Connector enhancer of KSR (Kinase suppresso	99.82
cd01265	95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	99.8
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	99.79
cd01251	103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	99.78
cd01247	91	PH_GPBP Goodpasture antigen binding protein (GPBP)	99.76
PF01363	69	FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc f	99.76
cd01252	125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	99.75
cd01264	101	PH_melted Melted pleckstrin homology (PH) domain.	99.75
cd01238	106	PH_Tec Tec pleckstrin homology (PH) domain. Tec pl	99.73
cd01235	101	PH_SETbf Set binding factor Pleckstrin Homology (P	99.72
cd01257	101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	99.72
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	99.71
cd01236	104	PH_outspread Outspread Pleckstrin homology (PH) do	99.7
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	99.68
cd01250	94	PH_centaurin Centaurin Pleckstrin homology (PH) do	99.68
cd01266	108	PH_Gab Gab (Grb2-associated binder) pleckstrin hom	99.67
smart00064	68	FYVE Protein present in Fab1, YOTB, Vac1, and EEA1	99.67
cd01245	98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	99.66
cd01263	122	PH_anillin Anillin Pleckstrin homology (PH) domain	99.63
cd01241	102	PH_Akt Akt pleckstrin homology (PH) domain. Akt pl	99.61
cd01253	104	PH_beta_spectrin Beta-spectrin pleckstrin homology	99.6
cd01237	106	Unc112 Unc-112 pleckstrin homology (PH) domain. Un	99.59
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	99.58
KOG0930|consensus	395		99.57
cd01230	117	PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6	99.54
KOG1818|consensus	634		99.5
PTZ00303	1374	phosphatidylinositol kinase; Provisional	99.48
KOG1819|consensus	990		99.47
PF15409	89	PH_8: Pleckstrin homology domain	99.45
cd01256	110	PH_dynamin Dynamin pleckstrin homology (PH) domain	99.44
cd01254	121	PH_PLD Phospholipase D (PLD) pleckstrin homology (	99.44
PF15410	119	PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN	99.42
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	99.41
cd01220	99	PH_CDEP Chondrocyte-derived ezrin-like domain cont	99.39
cd00065	57	FYVE FYVE domain; Zinc-binding domain; targets pro	99.37
KOG1841|consensus	1287		99.37
PF15413	112	PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE	99.34
cd01234	117	PH_CADPS CADPS (Ca2+-dependent activator protein)	99.33
KOG3531|consensus	1036		99.33
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	99.32
cd01219	101	PH_FGD FGD (faciogenital dysplasia protein) plecks	99.31
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	99.25
KOG1090|consensus	1732		99.19
KOG1842|consensus	505		99.1
cd01220	99	PH_CDEP Chondrocyte-derived ezrin-like domain cont	99.08
cd01218	104	PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain	99.07
cd01219	101	PH_FGD FGD (faciogenital dysplasia protein) plecks	99.04
cd01242	112	PH_ROK Rok (Rho- associated kinase) pleckstrin hom	98.76
cd01243	122	PH_MRCK MRCK (myotonic dystrophy-related Cdc42-bin	98.75
cd01259	114	PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor pr	98.74
KOG1843|consensus	473		98.73
cd01218	104	PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain	98.71
cd01249	104	PH_oligophrenin Oligophrenin Pleckstrin homology (	98.57
cd01264	101	PH_melted Melted pleckstrin homology (PH) domain.	98.53
cd01261	112	PH_SOS Son of Sevenless (SOS) Pleckstrin homology	98.51
KOG0690|consensus	516		98.49
cd01239	117	PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin hom	98.49
cd01226	100	PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin	98.47
cd01261	112	PH_SOS Son of Sevenless (SOS) Pleckstrin homology	98.46
KOG3640|consensus	1116		98.43
cd01251	103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	98.39
cd01265	95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	98.32
KOG1409|consensus	404		98.31
KOG0521|consensus	785		98.27
KOG2059|consensus	800		98.26
cd01257	101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	98.21
cd01258	108	PH_syntrophin Syntrophin pleckstrin homology (PH)	98.19
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	98.17
PF14593	104	PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.	98.16
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	98.14
cd01222	97	PH_clg Clg (common-site lymphoma/leukemia guanine	98.13
cd01236	104	PH_outspread Outspread Pleckstrin homology (PH) do	98.07
cd01260	96	PH_CNK Connector enhancer of KSR (Kinase suppresso	98.03
PLN00188	719	enhanced disease resistance protein (EDR2); Provis	98.0
KOG3751|consensus	622		97.96
KOG0705|consensus	749		97.96
KOG0932|consensus	774		97.95
cd01238	106	PH_Tec Tec pleckstrin homology (PH) domain. Tec pl	97.92
KOG0521|consensus	785		97.91
cd01235	101	PH_SETbf Set binding factor Pleckstrin Homology (P	97.86
KOG3543|consensus	1218		97.85
cd01224	109	PH_Collybistin Collybistin pleckstrin homology (PH	97.85
cd01240	116	PH_beta-ARK Beta adrenergic receptor kinase 1(beta	97.84
cd01250	94	PH_centaurin Centaurin Pleckstrin homology (PH) do	97.81
cd01226	100	PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin	97.79
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	97.78
cd01247	91	PH_GPBP Goodpasture antigen binding protein (GPBP)	97.78
PLN02866	1068	phospholipase D	97.78
PTZ00267	478	NIMA-related protein kinase; Provisional	97.74
cd01245	98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	97.74
cd01266	108	PH_Gab Gab (Grb2-associated binder) pleckstrin hom	97.73
cd01225	111	PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-	97.65
cd01249	104	PH_oligophrenin Oligophrenin Pleckstrin homology (	97.61
cd01254	121	PH_PLD Phospholipase D (PLD) pleckstrin homology (	97.59
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	97.56
PF15413	112	PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE	97.55
KOG0248|consensus	936		97.53
cd01252	125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	97.5
cd01231	107	PH_Lnk LNK-family Pleckstrin homology (PH) domain.	97.42
KOG1811|consensus	1141		97.39
cd01222	97	PH_clg Clg (common-site lymphoma/leukemia guanine	97.28
cd01230	117	PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6	97.26
PF02318	118	FYVE_2: FYVE-type zinc finger; InterPro: IPR003315	97.22
cd01228	96	PH_BCR-related BCR (breakpoint cluster region)-rel	97.22
KOG0230|consensus	1598		97.19
cd01262	89	PH_PDK1 3-Phosphoinositide dependent protein kinas	97.16
cd01241	102	PH_Akt Akt pleckstrin homology (PH) domain. Akt pl	97.15
PTZ00283	496	serine/threonine protein kinase; Provisional	97.14
cd01253	104	PH_beta_spectrin Beta-spectrin pleckstrin homology	97.14
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	97.11
cd01223	116	PH_Vav Vav pleckstrin homology (PH) domain. Vav pl	97.09
KOG1117|consensus	1186		97.08
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	97.07
PF15408	104	PH_7: Pleckstrin homology domain	96.96
KOG1739|consensus	611		96.93
cd01224	109	PH_Collybistin Collybistin pleckstrin homology (PH	96.89
PF15410	119	PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN	96.87
cd01221	125	PH_ephexin Ephexin Pleckstrin homology (PH) domain	96.87
cd01223	116	PH_Vav Vav pleckstrin homology (PH) domain. Vav pl	96.86
PF15406	112	PH_6: Pleckstrin homology domain	96.83
cd01263	122	PH_anillin Anillin Pleckstrin homology (PH) domain	96.75
cd01228	96	PH_BCR-related BCR (breakpoint cluster region)-rel	96.68
KOG1738|consensus	638		96.64
cd01232	114	PH_TRIO Trio pleckstrin homology (PH) domain. Trio	96.57
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	96.53
PF12814	123	Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin	96.45
cd01221	125	PH_ephexin Ephexin Pleckstrin homology (PH) domain	96.41
KOG4236|consensus	888		96.4
PF15404	185	PH_4: Pleckstrin homology domain	96.38
KOG1451|consensus	812		96.3
KOG0930|consensus	395		96.29
KOG3723|consensus	851		96.2
cd01237	106	Unc112 Unc-112 pleckstrin homology (PH) domain. Un	96.14
KOG1841|consensus	1287		95.82
KOG3727|consensus	664		95.53
KOG0703|consensus	287		95.49
KOG3549|consensus	505		95.46
KOG0230|consensus	1598		95.23
KOG0248|consensus	936		95.17
PF15409	89	PH_8: Pleckstrin homology domain	94.93
cd01232	114	PH_TRIO Trio pleckstrin homology (PH) domain. Trio	94.65
cd01242	112	PH_ROK Rok (Rho- associated kinase) pleckstrin hom	94.62
cd01225	111	PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-	94.58
COG5347	319	GTPase-activating protein that regulates ARFs (ADP	94.56
KOG3551|consensus	506		94.53
cd01227	133	PH_Dbs Dbs (DBL's big sister) pleckstrin homology	94.5
cd01243	122	PH_MRCK MRCK (myotonic dystrophy-related Cdc42-bin	94.12
cd01248	115	PH_PLC Phospholipase C (PLC) pleckstrin homology (	93.68
PF12814	123	Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin	93.52
KOG4424|consensus	623		93.52
PF15405	135	PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.	93.52
smart00105	112	ArfGap Putative GTP-ase activating proteins for th	93.32
PF15405	135	PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.	93.22
cd01255	160	PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM	93.15
PF01412	116	ArfGap: Putative GTPase activating protein for Arf	93.13
cd01231	107	PH_Lnk LNK-family Pleckstrin homology (PH) domain.	93.08
PF15406	112	PH_6: Pleckstrin homology domain	92.83
KOG0690|consensus	516		92.82
KOG0932|consensus	774		92.76
PLN03119	648	putative ADP-ribosylation factor GTPase-activating	92.26
KOG1737|consensus	799		92.23
PF14593	104	PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.	92.16
PLN03131	705	hypothetical protein; Provisional	90.65
PF08458	110	PH_2: Plant pleckstrin homology-like region; Inter	90.64
KOG2070|consensus	661		90.48
cd01262	89	PH_PDK1 3-Phosphoinositide dependent protein kinas	90.15
KOG1729|consensus	288		90.02
PLN03114	395	ADP-ribosylation factor GTPase-activating protein	88.58
KOG4407|consensus	1973		88.55
KOG4807|consensus	593		87.51
KOG0704|consensus	386		87.25
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	85.64
cd01227	133	PH_Dbs Dbs (DBL's big sister) pleckstrin homology	85.58
KOG2059|consensus	800		85.36
KOG0517|consensus	2473		84.96
cd01258	108	PH_syntrophin Syntrophin pleckstrin homology (PH)	83.95
PF07975	51	C1_4: TFIIH C1-like domain; InterPro: IPR004595 Al	83.86
KOG2996|consensus	865		83.66
KOG1264|consensus	1267		83.51
cd01256	110	PH_dynamin Dynamin pleckstrin homology (PH) domain	82.53
KOG0706|consensus	454		80.51

>KOG4424|consensus

Probab=99.97  E-value=2e-31  Score=245.55  Aligned_cols=255  Identities=30%  Similarity=0.487  Sum_probs=205.8

Q ss_pred             CeeecCCCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHHhccccccccccccc------CCCcccCcCCC
Q psy2207           1 MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQ------SSIPELNLGKV   74 (305)
Q Consensus         1 m~v~~~~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~   74 (305)
                      |+|+..++.++++.|.|.+++|+..|+|.|++|+++|+++|+++|+.+.+...+|........      +......++..
T Consensus       325 ~~v~~~~~~~~~~tF~~~G~~r~vel~a~t~~ek~eWv~~I~~~Id~~kq~~eTfr~~s~t~~~~~d~~s~~~~~~l~~r  404 (623)
T KOG4424|consen  325 MQVQEDDNEELPHTFILTGKKRGVELQARTEQEKKEWVQAIQDAIDKHKQCRETFRKDSRTPISDNDMKSFSSDYVLGKR  404 (623)
T ss_pred             chhcccccccCCceEEEecccceEEeecCchhhHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhccccccccccccccc
Confidence            789999999999999999999999999999999999999999999999999999876542211      22334444443


Q ss_pred             ---CCeeeecCCCccccccccccc-ccccccccccccceeccCccCCeecccCCCCccccccHhhHHHHHhccCCCcchh
Q psy2207          75 ---APLWIPDSRVSMCQRCTSVFT-VTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNM  150 (305)
Q Consensus        75 ---~p~w~~d~~~~~C~~C~~~f~-~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~~~~~~~~~~~  150 (305)
                         +|.|  +.++++|+.|..+|+ .+.|||||+.||.++|+.|+.+...+.+++++..|||..||....+....+    
T Consensus       405 ~~~~~r~--~~k~~~c~~c~e~~~s~t~~R~~~k~~~~vlc~~cs~~~~~l~~~~s~ssrv~~~~~~~~~~a~~s~----  478 (623)
T KOG4424|consen  405 KRKAPRR--DNKVTSCDSCEETFNSITFRRHRCKAKGAVLCDKCSDFMAKLSYDNSRSSRVCMDRYLTPSGAPGSP----  478 (623)
T ss_pred             cccCccc--ccccccchhhcCchhhHHHhhhhhhhccceeeccccchhhhhcccccchhhhhhhhccCCCCCCCCc----
Confidence               6777  888999999999998 688999999999999999999999999999999999999988665431111    


Q ss_pred             hhhhhhccccccccccccceeeecCCccccCCCCcccCCCcccccccccccccccCCCCCceeeeeeecc--CCCceEEE
Q psy2207         151 FERVKAVANVEDNHQVTNMMDIIRSNFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKS--GRNWKRYW  228 (305)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~~~--~~~wkrrw  228 (305)
                                                        +  ++.     .+...+..+...++..++++|.+..  ++.|...|
T Consensus       479 ----------------------------------~--~rr-----~~~l~~~~a~~s~~~~~~s~l~~~~~~~~~g~~a~  517 (623)
T KOG4424|consen  479 ----------------------------------P--KRR-----QSILEIELATVSKENVICSHLKYMEAAGKTGILAW  517 (623)
T ss_pred             ----------------------------------h--hcc-----cccccccccccCCCceehhhHHHHhhcCccceeee
Confidence                                              0  111     2334455555556667888776655  78999999


Q ss_pred             EEEE---CCEEEEEccCccCccceEEEecCeEEEEcccc--CCcceeEEEEeCCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         229 FVLK---DQVMYKYKASEDIKALLSIPVLGYELEALNEQ--DNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       229 ~vL~---~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~--~~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      +++.   +.++|.|.+++|..+...|||.|+.|.+++..  .+..++|.++ .....|+|.|+|++..++|++.|-.|+.
T Consensus       518 ~~vP~~d~~~~~~Yg~~qDv~a~~~iPl~~~~v~~pe~~~~~D~~~~~k~~-~s~~~~~~~a~~~q~qq~wl~~l~~A~~  596 (623)
T KOG4424|consen  518 SVVPKSDPLVDYSYGSPQDVRAQATIPLPGVEVTIPEFVRREDLFHVFKLV-QSHLSWHLAADDEQLQQRWLEVLLLAVS  596 (623)
T ss_pred             eeccCCCCccccccCCccccccccccccCccccCCCcccccchhcchhhhh-hhcceeeeccCCHHHHHHHHHHHHhhhc
Confidence            9984   57999999999999999999999999854422  2344778876 4555799999999999999999988763

>KOG1729|consensus

Probab=99.94  E-value=3.2e-27  Score=206.98  Aligned_cols=187  Identities=27%  Similarity=0.473  Sum_probs=144.8

Q ss_pred             CCCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcccCcCCCCCeeeecCCCc
Q psy2207           6 PQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSIPELNLGKVAPLWIPDSRVS   85 (305)
Q Consensus         6 ~~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~d~~~~   85 (305)
                      .++..+.+..+|.+..++|.+.|.+..||.+|+..|.+++.+..+...           +....+.+..+++|+||++++
T Consensus       101 ~~~~~~~~~~~~~S~~ks~~~~~as~~ek~e~~~~i~~~~~~~l~~~~-----------~~~~~~~~~~~~~W~PD~ea~  169 (288)
T KOG1729|consen  101 SDNERVRNGWQILSALKSFTVLAASQTEKNEWQNHITECVEDLLSKNE-----------EDGKSPSNNSAAVWLPDSEAT  169 (288)
T ss_pred             ccccccccchhhhcccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhh-----------hccCCCCCCcCCcccCcccce
Confidence            367788889999999999999999999999999999999988776521           133446678899999999999


Q ss_pred             ccccccc-cccccccccccccccceeccCccCCeecccCCCCccccccHhhHHHHHhccCCCcchhhhhhhhcccccccc
Q psy2207          86 MCQRCTS-VFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAVANVEDNH  164 (305)
Q Consensus        86 ~C~~C~~-~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (305)
                      +||.|+. .|+++.||||||+||.+||.-|+.++..|++...++.|||+.||..+....... .+       .+      
T Consensus       170 ~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el~~~~~~~-~~-------~~------  235 (288)
T KOG1729|consen  170 ECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEELEKGARGD-RE-------DS------  235 (288)
T ss_pred             ecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHHhcccccc-hh-------hc------
Confidence            9999999 999999999999999999999999999999999999999999999997511111 00       00      


Q ss_pred             ccccceeeecCCccccCCCCcccCCCcccccccccccccccCCCCCceeeeeeeccCCCceEEEEEEECCEEEEEcc
Q psy2207         165 QVTNMMDIIRSNFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKA  241 (305)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~~~~~~wkrrw~vL~~~~L~~y~~  241 (305)
                               .+.         ...+.     .+......+...+....+|+|++.. +.|++.||...+.+|++|.+
T Consensus       236 ---------~~~---------~~~~~-----~~~~~~~~~~~~~~~~~s~~l~~~s-~~~~~~~~~~~~~~l~~~~a  288 (288)
T KOG1729|consen  236 ---------LPV---------FHGKC-----YPNWLTTGAASTEDDADSGHLSRKS-RTVREFEFFHDGVVLGTVPA  288 (288)
T ss_pred             ---------ccc---------ccccc-----cccccccccccccccccCccccccc-cccccccccccCeeEeeccC
Confidence                     000         00111     2222233334445557888887664 38899999999999998863

>KOG1117|consensus

Probab=99.87  E-value=3.1e-22  Score=191.17  Aligned_cols=265  Identities=16%  Similarity=0.213  Sum_probs=184.9

Q ss_pred             ceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcccCcCCCCCeeeecCCCcccccccc
Q psy2207          13 NEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSIPELNLGKVAPLWIPDSRVSMCQRCTS   92 (305)
Q Consensus        13 ~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~d~~~~~C~~C~~   92 (305)
                      ..|++.||.|+|.|+|+++.||+.|+++.|.+|++.....+                   .+.-+|... .+..|++|+.
T Consensus       247 ~sfdl~Tp~r~fsftaese~erq~w~ea~q~siAeTlSd~e-------------------vaeriW~ne-~nr~cadC~s  306 (1186)
T KOG1117|consen  247 RSFDLNTPYREFSFTAESETERQIWGEAPQPSIAETLSDYE-------------------VAERIWLNE-ENRECADCGS  306 (1186)
T ss_pred             ceeccCCceeeeeeeeccchhhhhhhhccCcccccccChHH-------------------HHHHHHhcc-ccccccccCC
Confidence            79999999999999999999999999999999988654321                   334578865 4679999999


Q ss_pred             cccccccccccccccceeccCccCCeecccCCCC----------------------------------------------
Q psy2207          93 VFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKF----------------------------------------------  126 (305)
Q Consensus        93 ~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~----------------------------------------------  126 (305)
                      +=+.|...+.|    .|||+.|.++|+.||+..+                                              
T Consensus       307 srPdwasiNL~----vvIck~caGqhrslgs~dSkvrslkmd~svwsneliElfivlgn~~an~Fwa~nl~~~e~lh~ds  382 (1186)
T KOG1117|consen  307 SRPDWASINLC----VVICKPCAGQHRSLGSGDSKVRSLKMDPSVWSNELIELFIVLGNPRANRFWAGNLPPNEHLHPDS  382 (1186)
T ss_pred             CCCcccccccc----eEEcccCCCccccCCCccccccccccCcccccchhhhhheeecCcccccccccCCCCccccCCCC
Confidence            77776666555    9999999999999976211                                              


Q ss_pred             -ccccc----------cHhhHHHHHhccCCCcchhhhhhhhccccccccccccc-eeeecCCccccCCCCcccCC-----
Q psy2207         127 -RNFRV----------CEECYHYLVQEFDDEDSNMFERVKAVANVEDNHQVTNM-MDIIRSNFKEMGTAGRRKPS-----  189 (305)
Q Consensus       127 -~~~rv----------C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----  189 (305)
                       ..-|-          |..=+..+....++...++|..+-.+..++.......+ -++.+.+.+..+.|..-.++     
T Consensus       383 sp~~r~~fi~~Kykeg~fRk~~~~~~~~sel~kalcaaV~~pdl~etma~l~sga~v~~f~gd~~~~tp~~~a~~aGqsl  462 (1186)
T KOG1117|consen  383 SPSTRRQFIKEKYKEGKFRKEHPVEICSSELPKALCAAVNVPDLLETMALLFSGADVMCFTGDPVHSTPYLLAKKAGQSL  462 (1186)
T ss_pred             CcchhhhHHHHHhhccccccccccccccccCChhheeeeeCCchhhHHHHhhccccceeecCCCCCCCCcchhhccccch
Confidence             01111          22222333344555566778888778877777766665 34456665555554321111     


Q ss_pred             -Cccccc-----cc--cccccc-ccCCCCCceeeeeeecc------------CCCceEEEEEEECCEEEEEccCccCccc
Q psy2207         190 -KKYRKY-----VP--QRLIEV-TANDSGSQHSGWLHKKS------------GRNWKRYWFVLKDQVMYKYKASEDIKAL  248 (305)
Q Consensus       190 -~~~~~~-----~~--~~~~~~-~~~~~~~~~~G~L~~~~------------~~~wkrrw~vL~~~~L~~y~~~~d~~p~  248 (305)
                       .+.--.     .|  ...+++ ....+...++|+||...            .....++||||.|+.|+||.++....|.
T Consensus       463 qmefl~~n~~s~~p~~ds~kel~~~~s~s~~~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S~tP~  542 (1186)
T KOG1117|consen  463 QMEFLYHNKFSDFPQHDSHKELSQEYSQSTFLCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKSTTPN  542 (1186)
T ss_pred             hheeeeccccccCCCccccchhhhhccccccccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCCCCCC
Confidence             000000     01  011111 11223456789999765            3357899999999999999999999999


Q ss_pred             eEEEecCeEE--EEcccc---CCcceeEEEEeCCceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207         249 LSIPVLGYEL--EALNEQ---DNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA  301 (305)
Q Consensus       249 ~~i~L~~~~v--~~~~~~---~~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a  301 (305)
                      +.|.+.....  +..++.   .+..|.|+|+..+++.|.|.+++.+++..|..+|.++
T Consensus       543 ~lI~~~Eivclav~~pd~~pn~~~~f~fE~~l~~er~~~fgle~ad~l~~wt~aiaKh  600 (1186)
T KOG1117|consen  543 GLININEIVCLAVHPPDTYPNTGFIFIFEIYLPGERVFLFGLETADALRKWTEAIAKH  600 (1186)
T ss_pred             ceeeccceEEEeecCCCCCCCcCceeEEEEeecccceEEeecccHHHHHHHHHHHHHh
Confidence            9999965333  333332   3667999999999999999999999999999999765

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

Probab=99.82  E-value=1e-19  Score=136.64  Aligned_cols=89  Identities=33%  Similarity=0.653  Sum_probs=79.6

Q ss_pred             eeeeeeecc--CC----CceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEc
Q psy2207         212 HSGWLHKKS--GR----NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGA  285 (305)
Q Consensus       212 ~~G~L~~~~--~~----~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a  285 (305)
                      ++|||++++  .+    .|++|||||.++.|+||+++.+..|.+.|+|.++.|....+. .++++|+|.+++.++|+|+|
T Consensus         2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~-~k~~~F~I~~~~~~~~~f~a   80 (96)
T cd01260           2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQDEKAEGLIFLSGFTIESAKEV-KKKYAFKVCHPVYKSFYFAA   80 (96)
T ss_pred             ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCCCccceEEEccCCEEEEchhc-CCceEEEECCCCCcEEEEEe
Confidence            689999987  34    899999999999999999999999999999999988766443 47799999987768899999


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy2207         286 DNEQSYERWMKAMREA  301 (305)
Q Consensus       286 ~s~e~~~~Wi~al~~a  301 (305)
                      +|++++++||.+|+.|
T Consensus        81 ~s~~e~~~Wi~ai~~~   96 (96)
T cd01260          81 ETLDDLSQWVNHLITA   96 (96)
T ss_pred             CCHHHHHHHHHHHHhC
Confidence            9999999999999876

Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain

Probab=99.80  E-value=4e-19  Score=132.86  Aligned_cols=87  Identities=25%  Similarity=0.474  Sum_probs=74.7

Q ss_pred             eeeeeeecc----CCCceEEEEEEEC--CEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEc
Q psy2207         212 HSGWLHKKS----GRNWKRYWFVLKD--QVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGA  285 (305)
Q Consensus       212 ~~G~L~~~~----~~~wkrrw~vL~~--~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a  285 (305)
                      ++|||++++    .+.|++|||||++  ..|+||+++.+..|.|.|+|.++.+...+..  .++.|.|.+ +.++|+|.|
T Consensus         1 l~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~~~~~~~~~--~~~~F~i~t-~~r~y~l~A   77 (95)
T cd01265           1 LCGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGAAFTYDPRE--EKGRFEIHS-NNEVIALKA   77 (95)
T ss_pred             CcccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCcccccceEECCccEEEcCCCC--CCCEEEEEc-CCcEEEEEC
Confidence            479999986    4689999999974  5899999999999999999998777654332  367999985 567899999


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy2207         286 DNEQSYERWMKAMREA  301 (305)
Q Consensus       286 ~s~e~~~~Wi~al~~a  301 (305)
                      +|++++++||+||+.+
T Consensus        78 ~s~~e~~~Wi~al~~~   93 (95)
T cd01265          78 SSDKQMNYWLQALQSK   93 (95)
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999999876

PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=99.79  E-value=1.7e-18  Score=130.79  Aligned_cols=91  Identities=16%  Similarity=0.275  Sum_probs=78.9

Q ss_pred             Cceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEcccc---CCcceeEEEEeCCceeEEEE
Q psy2207         210 SQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ---DNFKYVFQLKHQGQDPLVFG  284 (305)
Q Consensus       210 ~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~---~~~~~~F~l~~~~~~~~~f~  284 (305)
                      ++++|||.+++  .+.|++|||||+++.|+||+++.+..|.+.|+|.++.|...++.   .+++++|.|.. +.++|+|+
T Consensus         2 v~k~G~L~Kkg~~~k~WkkRwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t-~~rt~~~~   80 (100)
T cd01233           2 VSKKGYLNFPEETNSGWTRRFVVVRRPYLHIYRSDKDPVERGVINLSTARVEHSEDQAAMVKGPNTFAVCT-KHRGYLFQ   80 (100)
T ss_pred             cceeEEEEeeCCCCCCcEEEEEEEECCEEEEEccCCCccEeeEEEecccEEEEccchhhhcCCCcEEEEEC-CCCEEEEE
Confidence            35889999998  78899999999999999999999999999999998888765433   13578999975 56789999


Q ss_pred             cCCHHHHHHHHHHHHHH
Q psy2207         285 ADNEQSYERWMKAMREA  301 (305)
Q Consensus       285 a~s~e~~~~Wi~al~~a  301 (305)
                      |+|++++++||++|+..
T Consensus        81 A~s~~e~~~Wi~ai~~~   97 (100)
T cd01233          81 ALSDKEMIDWLYALNPL   97 (100)
T ss_pred             cCCHHHHHHHHHHhhhh
Confidence            99999999999999654

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain

Probab=99.78  E-value=2.8e-18  Score=130.23  Aligned_cols=91  Identities=24%  Similarity=0.451  Sum_probs=74.5

Q ss_pred             eeeeeeecc---CCCceEEEEEEECCEEEEEccCccCccceEEEec----CeEEEEc--cc-cCCcceeEEEEeCCceeE
Q psy2207         212 HSGWLHKKS---GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVL----GYELEAL--NE-QDNFKYVFQLKHQGQDPL  281 (305)
Q Consensus       212 ~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~----~~~v~~~--~~-~~~~~~~F~l~~~~~~~~  281 (305)
                      ++|||.|++   .+.|++|||||++..|+||+++.+..|.|.|+|.    ++.|...  +. .....++|.|.++ +++|
T Consensus         1 KeG~L~K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~-~Rty   79 (103)
T cd01251           1 KEGFMEKTGPKHTEGFKKRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTP-ERKF   79 (103)
T ss_pred             CceeEEecCCCCCCCceeEEEEEeCCEEEEECCCCCcCcCcEEEeeccccceeEeccCCccccccccceEEEEeC-CeEE
Confidence            479999998   3789999999999999999999999999999995    3455421  11 1223359999865 6789


Q ss_pred             EEEcCCHHHHHHHHHHHHHHHc
Q psy2207         282 VFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       282 ~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      +|.|+|++++++||+||+.+..
T Consensus        80 ~l~a~s~~e~~~Wi~ai~~v~~  101 (103)
T cd01251          80 LFACETEQDRREWIAAFQNVLS  101 (103)
T ss_pred             EEECCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999864

Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain

Probab=99.76  E-value=8.8e-18  Score=124.37  Aligned_cols=86  Identities=23%  Similarity=0.260  Sum_probs=74.4

Q ss_pred             eeeeeeecc--CCCceEEEEEEECCEEEEEccCcc--CccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCC
Q psy2207         212 HSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASED--IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADN  287 (305)
Q Consensus       212 ~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d--~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s  287 (305)
                      ++|||.|.+  .+.|++|||||+++.|.||+++.+  ..|.|.|+|.++.+...+   ..++.|+|.....++|+|.|+|
T Consensus         1 ~~G~L~K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~~~~---~~~~~F~i~~~~~r~~~L~A~s   77 (91)
T cd01247           1 TNGVLSKWTNYINGWQDRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKKAIIAAHE---FDENRFDISVNENVVWYLRAEN   77 (91)
T ss_pred             CceEEEEeccccCCCceEEEEEECCEEEEEecCccCcCCCcEEEECcccEEEcCC---CCCCEEEEEeCCCeEEEEEeCC
Confidence            479999998  889999999999999999999776  457999999988776542   2357999976666899999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2207         288 EQSYERWMKAMRE  300 (305)
Q Consensus       288 ~e~~~~Wi~al~~  300 (305)
                      ++++++||+||+.
T Consensus        78 ~~e~~~Wi~al~~   90 (91)
T cd01247          78 SQSRLLWMDSVVR   90 (91)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999975

Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt

>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.76  E-value=2.1e-19  Score=126.44  Aligned_cols=65  Identities=46%  Similarity=0.979  Sum_probs=48.1

Q ss_pred             CeeeecCCCcccccccccccccccccccccccceeccCccCCeeccc---CCCCccccccHhhHHHHH
Q psy2207          76 PLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLE---YKKFRNFRVCEECYHYLV  140 (305)
Q Consensus        76 p~w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~---~~~~~~~rvC~~C~~~~~  140 (305)
                      |.|+||+++..|+.|+.+|++++||||||.||.+||..|+.++..++   .....++|||+.|+..+.
T Consensus         1 ~~W~~d~~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~   68 (69)
T PF01363_consen    1 PHWVPDSEASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYSKLQ   68 (69)
T ss_dssp             --SSSGGG-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHHHHHH
T ss_pred             CCcCCCCCCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHHHHhc
Confidence            78999999999999999999999999999999999999999998876   456889999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain

Probab=99.75  E-value=1.7e-17  Score=130.60  Aligned_cols=91  Identities=23%  Similarity=0.596  Sum_probs=79.9

Q ss_pred             eeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCCc-----------
Q psy2207         212 HSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQ-----------  278 (305)
Q Consensus       212 ~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~-----------  278 (305)
                      ..|||++++  .+.|++|||||.++.|+||+++.+..|.+.|+|.++.|...+. ..++++|+|..+..           
T Consensus         2 k~G~L~K~~~~~~~WkkRwfvL~~~~L~yyk~~~~~~~~g~I~L~~~~v~~~~~-~~~~~~F~i~~~~~~~~i~~~~~~~   80 (125)
T cd01252           2 REGWLLKQGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENVSIREVED-PSKPFCFELFSPSDKQQIKACKTES   80 (125)
T ss_pred             cEEEEEEeCCCCCCeEeEEEEEECCEEEEEcCCCCCCceEEEECCCcEEEEccc-CCCCeeEEEECCccccccccccccc
Confidence            579999998  7899999999999999999999999999999999988876644 35678999987554           


Q ss_pred             ---------eeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         279 ---------DPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       279 ---------~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                               +.|+|+|+|++++++||+||+.++.
T Consensus        81 ~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~  114 (125)
T cd01252          81 DGRVVEGNHSVYRISAANDEEMDEWIKSIKASIS  114 (125)
T ss_pred             cccccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence                     6789999999999999999998764

Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01264 PH_melted Melted pleckstrin homology (PH) domain

Probab=99.75  E-value=1.4e-17  Score=124.43  Aligned_cols=91  Identities=18%  Similarity=0.280  Sum_probs=74.8

Q ss_pred             ceeeeeeecc-----CCCceEEEEEEECCEEEEEccCccCccc-eEEEecCeEEEEccccC----CcceeEEEEeCCcee
Q psy2207         211 QHSGWLHKKS-----GRNWKRYWFVLKDQVMYKYKASEDIKAL-LSIPVLGYELEALNEQD----NFKYVFQLKHQGQDP  280 (305)
Q Consensus       211 ~~~G~L~~~~-----~~~wkrrw~vL~~~~L~~y~~~~d~~p~-~~i~L~~~~v~~~~~~~----~~~~~F~l~~~~~~~  280 (305)
                      +++|||.+++     .+.|++|||+|+++.|+||+......|. +.|+|..+..+......    ..+++|+|.+++ ++
T Consensus         1 ~~~G~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~-rt   79 (101)
T cd01264           1 LIEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTAD-KT   79 (101)
T ss_pred             CcceEEeecCccceeeecceeEEEEEeCCEEEEEeccCccCCCCceEEcccceEEeeccccccccccCcEEEEEcCC-ce
Confidence            3789998887     4789999999999999999988666666 99999887765443321    336999998655 78


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHH
Q psy2207         281 LVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       281 ~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      |+|.|+|+++++.||++|+.|.
T Consensus        80 ~~l~A~se~e~e~WI~~i~~a~  101 (101)
T cd01264          80 YILKAKDEKNAEEWLQCLNIAV  101 (101)
T ss_pred             EEEEeCCHHHHHHHHHHHHhhC
Confidence            9999999999999999999873

Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01238 PH_Tec Tec pleckstrin homology (PH) domain

Probab=99.73  E-value=3.7e-17  Score=124.69  Aligned_cols=89  Identities=27%  Similarity=0.346  Sum_probs=72.2

Q ss_pred             ceeeeeeecc-------CCCceEEEEEEECCEEEEEccCcc--CccceEEEecCeEEEEc-cccC------CcceeEEEE
Q psy2207         211 QHSGWLHKKS-------GRNWKRYWFVLKDQVMYKYKASED--IKALLSIPVLGYELEAL-NEQD------NFKYVFQLK  274 (305)
Q Consensus       211 ~~~G~L~~~~-------~~~wkrrw~vL~~~~L~~y~~~~d--~~p~~~i~L~~~~v~~~-~~~~------~~~~~F~l~  274 (305)
                      +.+|||++++       .+.|++|||||+++.|+||+++.+  ..|.|.|+|.++.+... .+..      ...++|+|.
T Consensus         1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~   80 (106)
T cd01238           1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVV   80 (106)
T ss_pred             CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcccccCcceeEECCcceEEEEecCCcCcccccccCccEEEE
Confidence            3689999986       348999999999999999999876  47999999988765532 2211      246899999


Q ss_pred             eCCceeEEEEcCCHHHHHHHHHHHHH
Q psy2207         275 HQGQDPLVFGADNEQSYERWMKAMRE  300 (305)
Q Consensus       275 ~~~~~~~~f~a~s~e~~~~Wi~al~~  300 (305)
                      +++ ++|++.|+|++++++||+||++
T Consensus        81 t~~-r~~yl~A~s~~er~~WI~ai~~  105 (106)
T cd01238          81 HDE-GTLYVFAPTEELRKRWIKALKQ  105 (106)
T ss_pred             eCC-CeEEEEcCCHHHHHHHHHHHHh
Confidence            755 5688999999999999999985

Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis

>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain

Probab=99.72  E-value=7.6e-17  Score=122.08  Aligned_cols=90  Identities=26%  Similarity=0.417  Sum_probs=73.3

Q ss_pred             eeeeeeecc--CCCceEEEEEEE--CCEEEEEccCccCccceEEEecCeEEEEc-ccc------CCcceeEEEEeCCcee
Q psy2207         212 HSGWLHKKS--GRNWKRYWFVLK--DQVMYKYKASEDIKALLSIPVLGYELEAL-NEQ------DNFKYVFQLKHQGQDP  280 (305)
Q Consensus       212 ~~G~L~~~~--~~~wkrrw~vL~--~~~L~~y~~~~d~~p~~~i~L~~~~v~~~-~~~------~~~~~~F~l~~~~~~~  280 (305)
                      .+|||.|++  .+.|++|||||.  +..|+||+++.+..|.|.|+|..+..... ...      ....+.|.|. +..++
T Consensus         1 ~~G~L~K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~-t~~r~   79 (101)
T cd01235           1 CEGYLYKRGALLKGWKPRWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLK-TSKRT   79 (101)
T ss_pred             CeEEEEEcCCCCCCccceEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCCCCCCCCCCceEEEEE-eCCce
Confidence            479999998  789999999998  45999999999999999999987654432 111      1244678886 56678


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHH
Q psy2207         281 LVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       281 ~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      |+|.|++++++++||.||+.++
T Consensus        80 ~~~~a~s~~e~~~Wi~ai~~~i  101 (101)
T cd01235          80 YNFLAENINEAQRWKEKIQQCI  101 (101)
T ss_pred             EEEECCCHHHHHHHHHHHHhhC
Confidence            9999999999999999998763

Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

Probab=99.72  E-value=8.5e-17  Score=120.81  Aligned_cols=88  Identities=19%  Similarity=0.354  Sum_probs=74.3

Q ss_pred             CceeeeeeeccCCCceEEEEEEECC------EEEEEccCcc-----CccceEEEecCeEEEEccccCCcceeEEEEeCCc
Q psy2207         210 SQHSGWLHKKSGRNWKRYWFVLKDQ------VMYKYKASED-----IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQ  278 (305)
Q Consensus       210 ~~~~G~L~~~~~~~wkrrw~vL~~~------~L~~y~~~~d-----~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~  278 (305)
                      +.++|||.++  +.|+||||||++.      .|.||+++..     ..|.+.|+|.+|..+....+...+|+|.|.++. 
T Consensus         2 v~k~GyL~K~--K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d~k~~~~f~i~t~d-   78 (101)
T cd01257           2 VRKSGYLRKQ--KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRADAKHRHLIALYTRD-   78 (101)
T ss_pred             ccEEEEEeEe--cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccccccCeEEEEEeCC-
Confidence            5789999996  7999999999866      7999999864     679999999988776543334456999999765 


Q ss_pred             eeEEEEcCCHHHHHHHHHHHHH
Q psy2207         279 DPLVFGADNEQSYERWMKAMRE  300 (305)
Q Consensus       279 ~~~~f~a~s~e~~~~Wi~al~~  300 (305)
                      ++|+|.|+|++++++|+++|..
T Consensus        79 r~f~l~aese~E~~~Wi~~i~~  100 (101)
T cd01257          79 EYFAVAAENEAEQDSWYQALLE  100 (101)
T ss_pred             ceEEEEeCCHHHHHHHHHHHhh
Confidence            6899999999999999999953

Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=99.71  E-value=1.3e-16  Score=118.28  Aligned_cols=87  Identities=26%  Similarity=0.530  Sum_probs=76.9

Q ss_pred             eeeeeeecc--CCCceEEEEEEECCEEEEEccCccC--ccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCC
Q psy2207         212 HSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDI--KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADN  287 (305)
Q Consensus       212 ~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~--~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s  287 (305)
                      ++|||++++  .+.|++|||+|.++.|+||+++.+.  .|.+.|+|.++.+...+   ..+++|+|...+++.|+|+|+|
T Consensus         1 ~~G~L~k~~~~~~~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~~~~~~~---~~~~~F~i~~~~~~~~~~~a~s   77 (91)
T cd01246           1 VEGWLLKWTNYLKGWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGAVISEDD---SDDKCFTIDTGGDKTLHLRANS   77 (91)
T ss_pred             CeEEEEEecccCCCceeeEEEEECCEEEEEecCccCCCCceEEEEeceEEEEECC---CCCcEEEEEcCCCCEEEEECCC
Confidence            579999987  7889999999999999999999877  89999999988776543   2368999998776889999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy2207         288 EQSYERWMKAMREA  301 (305)
Q Consensus       288 ~e~~~~Wi~al~~a  301 (305)
                      ++++.+||.||+.|
T Consensus        78 ~~e~~~Wi~al~~a   91 (91)
T cd01246          78 EEERQRWVDALELA   91 (91)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999999875

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain

Probab=99.70  E-value=1.4e-16  Score=120.12  Aligned_cols=88  Identities=14%  Similarity=0.278  Sum_probs=68.7

Q ss_pred             eeeeeeecc-----------CCCceEEEEEEE-CCEEEEEccC-ccCccceEEEecCeEEEEcc-ccCCcceeEEEEeCC
Q psy2207         212 HSGWLHKKS-----------GRNWKRYWFVLK-DQVMYKYKAS-EDIKALLSIPVLGYELEALN-EQDNFKYVFQLKHQG  277 (305)
Q Consensus       212 ~~G~L~~~~-----------~~~wkrrw~vL~-~~~L~~y~~~-~d~~p~~~i~L~~~~v~~~~-~~~~~~~~F~l~~~~  277 (305)
                      .+|||.+.+           .+.|+||||||+ ++.|+||+.. .+..|.|.|+|..+..+... ...+.+++|.|.++ 
T Consensus         1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~tp-   79 (104)
T cd01236           1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPTTLPQGTIDMNQCTDVVDAEARTGQKFSICILTP-   79 (104)
T ss_pred             CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCCcccceEEEccceEEEeecccccCCccEEEEECC-
Confidence            368888876           457999999998 5788777655 47789999999765554433 22344689999855 


Q ss_pred             ceeEEEEcCCHHHHHHHHHHHHH
Q psy2207         278 QDPLVFGADNEQSYERWMKAMRE  300 (305)
Q Consensus       278 ~~~~~f~a~s~e~~~~Wi~al~~  300 (305)
                      .++|+|.|+|+++++.|+++|..
T Consensus        80 ~R~f~l~Aete~E~~~Wi~~l~~  102 (104)
T cd01236          80 DKEHFIKAETKEEISWWLNMLMV  102 (104)
T ss_pred             CceEEEEeCCHHHHHHHHHHHHh
Confidence            57899999999999999999963

Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=99.68  E-value=1e-15  Score=115.32  Aligned_cols=93  Identities=31%  Similarity=0.593  Sum_probs=83.8

Q ss_pred             ceeeeeeecc--CCCceEEEEEEECCEEEEEccCc---cCccceEEEecCeEEEEcccc-----CCcceeEEEEeCCcee
Q psy2207         211 QHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASE---DIKALLSIPVLGYELEALNEQ-----DNFKYVFQLKHQGQDP  280 (305)
Q Consensus       211 ~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~---d~~p~~~i~L~~~~v~~~~~~-----~~~~~~F~l~~~~~~~  280 (305)
                      +++|||.+++  .+.|+++||+|.++.|++|+++.   +..|.+.|+|.++.|......     ...+++|.|.++++..
T Consensus         2 ~~~G~L~~~~~~~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~~~~   81 (104)
T PF00169_consen    2 IKEGWLLKKSSSRKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPNGKS   81 (104)
T ss_dssp             EEEEEEEEEESSSSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETTSEE
T ss_pred             EEEEEEEEECCCCCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeCCCcE
Confidence            5899999998  88999999999999999999988   688999999999988866544     3677999999988878


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         281 LVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       281 ~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      |+|.|+|+++++.|+++|++|+.
T Consensus        82 ~~~~~~s~~~~~~W~~~i~~~~~  104 (104)
T PF00169_consen   82 YLFSAESEEERKRWIQAIQKAIK  104 (104)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHC
T ss_pred             EEEEcCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999863

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain

Probab=99.68  E-value=5.7e-16  Score=115.46  Aligned_cols=89  Identities=25%  Similarity=0.504  Sum_probs=75.6

Q ss_pred             eeeeeeecc---CCCceEEEEEEECCEEEEEccCcc--CccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcC
Q psy2207         212 HSGWLHKKS---GRNWKRYWFVLKDQVMYKYKASED--IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGAD  286 (305)
Q Consensus       212 ~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~~~~d--~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~  286 (305)
                      +.|||.+++   .+.|++|||+|.++.|+||+++.+  ..+.+.|+|..+.|.........+++|.|..++ +.|+|+|+
T Consensus         1 k~G~L~kk~~~~~~~W~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~-~~~~f~a~   79 (94)
T cd01250           1 KQGYLYKRSSKSNKEWKKRWFVLKNGQLTYHHRLKDYDNAHVKEIDLRRCTVRHNGKQPDRRFCFEVISPT-KTWHFQAD   79 (94)
T ss_pred             CcceEEEECCCcCCCceEEEEEEeCCeEEEEcCCcccccccceEEeccceEEecCccccCCceEEEEEcCC-cEEEEECC
Confidence            479999886   468999999999999999998876  677889999888877665443467999999666 78999999


Q ss_pred             CHHHHHHHHHHHHHH
Q psy2207         287 NEQSYERWMKAMREA  301 (305)
Q Consensus       287 s~e~~~~Wi~al~~a  301 (305)
                      |++++++|+.||+.+
T Consensus        80 s~~~~~~Wi~al~~~   94 (94)
T cd01250          80 SEEERDDWISAIQES   94 (94)
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999999753

Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain

Probab=99.67  E-value=5e-16  Score=119.04  Aligned_cols=89  Identities=25%  Similarity=0.385  Sum_probs=72.0

Q ss_pred             eeeeeeecc--C----CCceEEEEEEECCE-------EEEEccCccCccceEEEecCeEEEEcc-----ccCCcceeEEE
Q psy2207         212 HSGWLHKKS--G----RNWKRYWFVLKDQV-------MYKYKASEDIKALLSIPVLGYELEALN-----EQDNFKYVFQL  273 (305)
Q Consensus       212 ~~G~L~~~~--~----~~wkrrw~vL~~~~-------L~~y~~~~d~~p~~~i~L~~~~v~~~~-----~~~~~~~~F~l  273 (305)
                      .+|||.+++  .    +.|++|||||.+..       |+||+++.+..|.|.|+|..+.++...     ......+.|.|
T Consensus         1 ~eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i   80 (108)
T cd01266           1 LEGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDI   80 (108)
T ss_pred             CceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEcccccccccCcccceEEEE
Confidence            369999988  2    39999999998765       699999999999999999887665321     11234578999


Q ss_pred             EeCCceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207         274 KHQGQDPLVFGADNEQSYERWMKAMREA  301 (305)
Q Consensus       274 ~~~~~~~~~f~a~s~e~~~~Wi~al~~a  301 (305)
                      .+ ..++|+|.|+|++++++||.+|++.
T Consensus        81 ~t-~~r~y~l~A~s~ee~~~Wi~~I~~~  107 (108)
T cd01266          81 ET-IVRDLYLVAKNEEEMTLWVNCICKL  107 (108)
T ss_pred             Ee-CCccEEEEECCHHHHHHHHHHHHhh
Confidence            85 4578999999999999999999764

Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str

>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1

Probab=99.67  E-value=3.5e-17  Score=114.70  Aligned_cols=65  Identities=49%  Similarity=1.045  Sum_probs=60.5

Q ss_pred             CeeeecCCCcccccccccccccccccccccccceeccCccCCeecccCCC-CccccccHhhHHHHH
Q psy2207          76 PLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKK-FRNFRVCEECYHYLV  140 (305)
Q Consensus        76 p~w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~-~~~~rvC~~C~~~~~  140 (305)
                      |.|++|+++..|+.|+.+|+++.|+|||+.||.+||..|+.++..++..+ +++.|||+.||..+.
T Consensus         2 ~~W~~~~~~~~C~~C~~~F~~~~rk~hCr~CG~i~C~~C~~~~~~~~~~~~~~p~rvC~~C~~~~~   67 (68)
T smart00064        2 PHWIPDEEVSNCMGCGKEFNLTKRRHHCRNCGRIFCSKCSSKKAPLPKLGIERPVRVCDDCYENLS   67 (68)
T ss_pred             CCCcCCCCCCcCcccCccccCcccccccccCCCCcChHHcCCeeecCccCCCCCcEECHHHHHHhc
Confidence            68999999999999999999999999999999999999999999998665 569999999998874

The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain

Probab=99.66  E-value=4.9e-16  Score=115.62  Aligned_cols=87  Identities=15%  Similarity=0.240  Sum_probs=75.0

Q ss_pred             eeeeeecc---CCCceEEEEEEEC----CEEEEEccCccCccceEEEecCeEEEEcccc-CCcceeEEEEeCCc-eeEEE
Q psy2207         213 SGWLHKKS---GRNWKRYWFVLKD----QVMYKYKASEDIKALLSIPVLGYELEALNEQ-DNFKYVFQLKHQGQ-DPLVF  283 (305)
Q Consensus       213 ~G~L~~~~---~~~wkrrw~vL~~----~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~-~~~~~~F~l~~~~~-~~~~f  283 (305)
                      .|||.|++   .+.|++|||+|.+    +.|+||+.+.+..|.+.|+|..+.|.+..+. .+++|+|+|+.+.. .+|++
T Consensus         2 ~G~l~K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~~V~~v~ds~~~r~~cFel~~~~~~~~y~~   81 (98)
T cd01245           2 KGNLLKRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSDAYLYPVHDSLFGRPNCFQIVERALPTVYYS   81 (98)
T ss_pred             CCccccCCCCcccccceeEEEEecCCCCceEEEEcCCCCCCccceeeccccEEEEccccccCCCeEEEEecCCCCeEEEE
Confidence            48898887   5789999999986    9999999999999999999998877765443 36789999997765 57999


Q ss_pred             EcCCHHHHHHHHHHHHH
Q psy2207         284 GADNEQSYERWMKAMRE  300 (305)
Q Consensus       284 ~a~s~e~~~~Wi~al~~  300 (305)
                      +|++ +++++||++|++
T Consensus        82 ~a~~-~er~~Wi~~l~~   97 (98)
T cd01245          82 CRSS-EERDKWIESLQA   97 (98)
T ss_pred             eCCH-HHHHHHHHHHhc
Confidence            9999 999999999975

RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain

Probab=99.63  E-value=1.8e-15  Score=117.03  Aligned_cols=91  Identities=15%  Similarity=0.242  Sum_probs=73.0

Q ss_pred             ceeeeeeecc----CCCceEEEEEEECCEEEEEccCcc---CccceEEEecCeEEEEc----cccCCcceeEEEEe--CC
Q psy2207         211 QHSGWLHKKS----GRNWKRYWFVLKDQVMYKYKASED---IKALLSIPVLGYELEAL----NEQDNFKYVFQLKH--QG  277 (305)
Q Consensus       211 ~~~G~L~~~~----~~~wkrrw~vL~~~~L~~y~~~~d---~~p~~~i~L~~~~v~~~----~~~~~~~~~F~l~~--~~  277 (305)
                      .+.|||+...    .+.|+||||||+|+.|+||+.+.+   ..|++.|+|.++.+...    .+...++++|.|..  +.
T Consensus         2 ~~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~   81 (122)
T cd01263           2 EYHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPK   81 (122)
T ss_pred             ccceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEeccc
Confidence            5789998633    789999999999999999998776   67999999988877643    23357788999853  22


Q ss_pred             -----------------ceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207         278 -----------------QDPLVFGADNEQSYERWMKAMREA  301 (305)
Q Consensus       278 -----------------~~~~~f~a~s~e~~~~Wi~al~~a  301 (305)
                                       ...|+|+|||.+++++|+.||++|
T Consensus        82 ~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~  122 (122)
T cd01263          82 METDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST  122 (122)
T ss_pred             ccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence                             113789999999999999999864

Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01241 PH_Akt Akt pleckstrin homology (PH) domain

Probab=99.61  E-value=9.1e-15  Score=110.75  Aligned_cols=91  Identities=20%  Similarity=0.447  Sum_probs=66.8

Q ss_pred             ceeeeeeecc--CCCceEEEEEEE-CCEEEEEccCccCccceEEEecCeEEE---EccccCCcceeEEEEeCC---ceeE
Q psy2207         211 QHSGWLHKKS--GRNWKRYWFVLK-DQVMYKYKASEDIKALLSIPVLGYELE---ALNEQDNFKYVFQLKHQG---QDPL  281 (305)
Q Consensus       211 ~~~G~L~~~~--~~~wkrrw~vL~-~~~L~~y~~~~d~~p~~~i~L~~~~v~---~~~~~~~~~~~F~l~~~~---~~~~  281 (305)
                      +++|||.+++  .+.|++|||+|+ ++.|+||+......+.+.++|.++.|.   +......+++.|.|...+   ...-
T Consensus         2 ~k~G~L~K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~~~~~~~r   81 (102)
T cd01241           2 VKEGWLHKRGEYIKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTERPRPNTFIIRCLQWTTVIER   81 (102)
T ss_pred             cEEEEEEeecCCCCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeeccCCCcceEEEEeccCCcccCE
Confidence            5899999998  789999999998 788888887655445577777776652   111123456899997322   1112


Q ss_pred             EEEcCCHHHHHHHHHHHHHH
Q psy2207         282 VFGADNEQSYERWMKAMREA  301 (305)
Q Consensus       282 ~f~a~s~e~~~~Wi~al~~a  301 (305)
                      +|+|+|++++++||+||+.+
T Consensus        82 ~f~a~s~ee~~eWi~ai~~v  101 (102)
T cd01241          82 TFHVESPEEREEWIHAIQTV  101 (102)
T ss_pred             EEEeCCHHHHHHHHHHHHhh
Confidence            56799999999999999876

Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain

Probab=99.60  E-value=1.1e-14  Score=110.90  Aligned_cols=81  Identities=23%  Similarity=0.410  Sum_probs=66.5

Q ss_pred             CCCceEEEEEEECCEEEEEccCccC--ccce--EEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCCHHHHHHHHH
Q psy2207         221 GRNWKRYWFVLKDQVMYKYKASEDI--KALL--SIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMK  296 (305)
Q Consensus       221 ~~~wkrrw~vL~~~~L~~y~~~~d~--~p~~--~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~  296 (305)
                      .+.|+++||+|++..|+||+++...  ...+  .|+|.++.+...++...++++|.|..+++..|+|+|+|++++..|+.
T Consensus        20 ~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~   99 (104)
T cd01253          20 NRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVASDYTKKKHVFRLRLPDGAEFLFQAPDEEEMSSWVR   99 (104)
T ss_pred             CCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecCCcccCceEEEEEecCCCEEEEECCCHHHHHHHHH
Confidence            5689999999999999999987643  2333  67777887777655456779999988887899999999999999999


Q ss_pred             HHHHH
Q psy2207         297 AMREA  301 (305)
Q Consensus       297 al~~a  301 (305)
                      +|+.|
T Consensus       100 aL~~~  104 (104)
T cd01253         100 ALKSA  104 (104)
T ss_pred             HHhcC
Confidence            99753

Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain

Probab=99.59  E-value=7.7e-15  Score=109.34  Aligned_cols=83  Identities=28%  Similarity=0.527  Sum_probs=68.6

Q ss_pred             CCCceEEEEEEECCEEEEEccCccC--ccceEEEecCeEEEEccccCCcceeEEEEeC---CceeEEEEcCCHHHHHHHH
Q psy2207         221 GRNWKRYWFVLKDQVMYKYKASEDI--KALLSIPVLGYELEALNEQDNFKYVFQLKHQ---GQDPLVFGADNEQSYERWM  295 (305)
Q Consensus       221 ~~~wkrrw~vL~~~~L~~y~~~~d~--~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~---~~~~~~f~a~s~e~~~~Wi  295 (305)
                      .+.|++|||+|++..|+||++..+.  .|...|.|.|+.|.++..-...+|.|+|..+   +.++|+|.|+|++++.+||
T Consensus        17 ~K~~KrrwF~lk~~~L~YyK~kee~~~~p~i~lnl~gcev~~dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya~Wm   96 (106)
T cd01237          17 LKGYKQYWFTFRDTSISYYKSKEDSNGAPIGQLNLKGCEVTPDVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEKQYAKWM   96 (106)
T ss_pred             hhhheeEEEEEeCCEEEEEccchhcCCCCeEEEecCceEEcccccccccceEEEEecCCccCCeEEEEECCCHHHHHHHH
Confidence            5679999999999999999997764  4555666689999877544455689999853   4568999999999999999


Q ss_pred             HHHHHHHc
Q psy2207         296 KAMREATT  303 (305)
Q Consensus       296 ~al~~a~~  303 (305)
                      +|++.|++
T Consensus        97 aa~rlas~  104 (106)
T cd01237          97 AACRLASK  104 (106)
T ss_pred             HHHHHhhC
Confidence            99999975

Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=99.58  E-value=2.4e-14  Score=106.92  Aligned_cols=79  Identities=11%  Similarity=0.131  Sum_probs=65.5

Q ss_pred             CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEc--cccCCcceeEEEEeCCceeEEEEcCCHHHHHHHHHHH
Q psy2207         221 GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEAL--NEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAM  298 (305)
Q Consensus       221 ~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~--~~~~~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al  298 (305)
                      .+.|++|||+|.+..|+||+++. ..|.|.|+|.....+..  +......+.|+|+++. ++|++.|+|++++++||.||
T Consensus        18 ~~n~KkRwF~Lt~~~L~Y~k~~~-~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~-r~~yi~a~s~~E~~~Wi~al   95 (98)
T cd01244          18 VLHFKKRYFQLTTTHLSWAKDVQ-CKKSALIKLAAIKGTEPLSDKSFVNVDIITIVCED-DTMQLQFEAPVEATDWLNAL   95 (98)
T ss_pred             CcCCceeEEEECCCEEEEECCCC-CceeeeEEccceEEEEEcCCcccCCCceEEEEeCC-CeEEEECCCHHHHHHHHHHH
Confidence            46899999999999999999876 58999999987666532  2223445899999765 58999999999999999999


Q ss_pred             HHH
Q psy2207         299 REA  301 (305)
Q Consensus       299 ~~a  301 (305)
                      +++
T Consensus        96 ~k~   98 (98)
T cd01244          96 EKQ   98 (98)
T ss_pred             hcC
Confidence            864

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG0930|consensus

Probab=99.57  E-value=1.1e-14  Score=124.32  Aligned_cols=95  Identities=22%  Similarity=0.501  Sum_probs=81.7

Q ss_pred             CCCceeeeeeecc---CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCC-------
Q psy2207         208 SGSQHSGWLHKKS---GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQG-------  277 (305)
Q Consensus       208 ~~~~~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~-------  277 (305)
                      -++...|||.+.+   .+.||||||+|.+++||||....|..|.|.|+|.+..+...+ +..++++|+|+.++       
T Consensus       258 fnpdREGWLlKlgg~rvktWKrRWFiLtdNCLYYFe~tTDKEPrGIIpLeNlsir~Ve-dP~kP~cfEly~ps~~gq~IK  336 (395)
T KOG0930|consen  258 FNPDREGWLLKLGGNRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVE-DPKKPNCFELYIPSNKGQVIK  336 (395)
T ss_pred             cCccccceeeeecCCcccchhheeEEeecceeeeeeeccCCCCCcceeccccceeecc-CCCCCCeEEEecCCCCcCeee
Confidence            3457899999998   678999999999999999999999999999999888776553 35789999998542       


Q ss_pred             --------------ceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         278 --------------QDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       278 --------------~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                                    ..+|..+|.+.|++++||++|+.++.
T Consensus       337 ACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is  376 (395)
T KOG0930|consen  337 ACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS  376 (395)
T ss_pred             eecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence                          23799999999999999999987653

>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain

Probab=99.54  E-value=1.2e-13  Score=106.43  Aligned_cols=83  Identities=16%  Similarity=0.329  Sum_probs=71.0

Q ss_pred             CCCceEEEEEEECCEEEEEccCcc-------CccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCCHHHHHH
Q psy2207         221 GRNWKRYWFVLKDQVMYKYKASED-------IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYER  293 (305)
Q Consensus       221 ~~~wkrrw~vL~~~~L~~y~~~~d-------~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s~e~~~~  293 (305)
                      .+.|+++||||+|..|++|+++..       ......|.|.++.+.+..+...++++|.|..+++..|.|+|.++++|+.
T Consensus        23 ~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~  102 (117)
T cd01230          23 KRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASDYSKKPHVFRLRTADWREFLFQTSSLKELQS  102 (117)
T ss_pred             CCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeeccccCCCcEEEEEcCCCCEEEEECCCHHHHHH
Confidence            368999999999999999999864       2345678888887777666778889999998888889999999999999


Q ss_pred             HHHHHHHHHc
Q psy2207         294 WMKAMREATT  303 (305)
Q Consensus       294 Wi~al~~a~~  303 (305)
                      ||.+|..|+.
T Consensus       103 Wi~~I~~~~~  112 (117)
T cd01230         103 WIERINVVAA  112 (117)
T ss_pred             HHHHHHHHHH
Confidence            9999987654

EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1818|consensus

Probab=99.50  E-value=6.2e-15  Score=140.14  Aligned_cols=83  Identities=34%  Similarity=0.658  Sum_probs=70.8

Q ss_pred             ccccCCCcccCcCCCCCeeeecCCCcccccccccccccccccccccccceeccCccCCeecccCCC-CccccccHhhHHH
Q psy2207          60 SLTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKK-FRNFRVCEECYHY  138 (305)
Q Consensus        60 ~~~~~~~~~~~~~~~~p~w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~-~~~~rvC~~C~~~  138 (305)
                      +.+.++...+.....+|-|+..   ..|+.|...|++++|.||||+||.|||.+|++...+||..+ ++++|||+.||+.
T Consensus       144 Fpe~~e~d~mf~~~~~pdW~D~---~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~~~VRVCd~C~E~  220 (634)
T KOG1818|consen  144 FPELDENDAMFDAETAPDWIDS---EECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIEKPVRVCDSCYEL  220 (634)
T ss_pred             ccccccchhhhcccCCcccccc---cccceeeeeeeeccccccccccchhhccCccccccCcccccccccceehhhhHHH
Confidence            3444445556777889999953   47999999999999999999999999999999999999776 5999999999999


Q ss_pred             HHhccCC
Q psy2207         139 LVQEFDD  145 (305)
Q Consensus       139 ~~~~~~~  145 (305)
                      +.....+
T Consensus       221 l~~~s~~  227 (634)
T KOG1818|consen  221 LTRASVG  227 (634)
T ss_pred             hhhcccc
Confidence            9876555

>PTZ00303 phosphatidylinositol kinase; Provisional

Probab=99.48  E-value=1.9e-14  Score=137.17  Aligned_cols=68  Identities=29%  Similarity=0.655  Sum_probs=55.3

Q ss_pred             CCCCeeeecCCC-ccccccccccccc-----ccccccccccceeccCccCCeecccC---------CCCccccccHhhHH
Q psy2207          73 KVAPLWIPDSRV-SMCQRCTSVFTVT-----FRRHHCRACGKVVCGPCSDYLAPLEY---------KKFRNFRVCEECYH  137 (305)
Q Consensus        73 ~~~p~w~~d~~~-~~C~~C~~~f~~~-----~rrhhCr~cg~v~C~~Cs~~~~~l~~---------~~~~~~rvC~~C~~  137 (305)
                      ..+|.|++|++. ..|+.|+.+|+.+     .|+||||+||.+||..||.++..++.         ....+.|||+.||.
T Consensus       448 LhAPvWqpDDEaSdtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYd  527 (1374)
T PTZ00303        448 LHNPSWQKDDESSDSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYK  527 (1374)
T ss_pred             ccCCCCCCCcccCCcccCcCCcccccccccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHH
Confidence            468999999984 7899999999743     69999999999999999998754321         12357799999996


Q ss_pred             HHH
Q psy2207         138 YLV  140 (305)
Q Consensus       138 ~~~  140 (305)
                      .+.
T Consensus       528 q~E  530 (1374)
T PTZ00303        528 EYE  530 (1374)
T ss_pred             HHH
Confidence            665

>KOG1819|consensus

Probab=99.47  E-value=7.8e-15  Score=134.12  Aligned_cols=68  Identities=38%  Similarity=0.812  Sum_probs=61.2

Q ss_pred             CCCCeeeecCCCcccccccccccccccccccccccceeccCccCCeecccCCC-CccccccH-----hhHHHHH
Q psy2207          73 KVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKK-FRNFRVCE-----ECYHYLV  140 (305)
Q Consensus        73 ~~~p~w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~-~~~~rvC~-----~C~~~~~  140 (305)
                      ..+|.||||..+..||-|..+|+.++||||||+||.|||+.||...++||..+ .+..|||.     .||....
T Consensus       890 lsppawipd~~a~~cmacq~pf~afrrrhhcrncggifcg~cs~asapip~~gl~ka~rvcrpqsnldc~~rqd  963 (990)
T KOG1819|consen  890 LSPPAWIPDEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKCSCASAPIPEHGLDKAPRVCRPQSNLDCLTRQD  963 (990)
T ss_pred             cCCcccCCCCcchhhhhccCcHHHHHHhhhhcccCceeecccccCCCCCcccccccCceecCCcccccceeecc
Confidence            45899999999999999999999999999999999999999999999998554 78999998     7776543

>PF15409 PH_8: Pleckstrin homology domain

Probab=99.45  E-value=1.1e-12  Score=95.34  Aligned_cols=83  Identities=25%  Similarity=0.477  Sum_probs=70.7

Q ss_pred             eeeeecc---CCCceEEEEEE--ECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCCH
Q psy2207         214 GWLHKKS---GRNWKRYWFVL--KDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNE  288 (305)
Q Consensus       214 G~L~~~~---~~~wkrrw~vL--~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s~  288 (305)
                      |||.|+.   .+.|.+|||+|  ..++|.||.++++....|.|+|....+.....    ...|.|. .+..+|++.|.|+
T Consensus         1 G~llKkrr~~lqG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~~~~----~~~I~id-sg~~i~hLKa~s~   75 (89)
T PF15409_consen    1 GWLLKKRRKPLQGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISANKK----SRRIDID-SGDEIWHLKAKSQ   75 (89)
T ss_pred             CcceeeccccCCCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEecCC----CCEEEEE-cCCeEEEEEcCCH
Confidence            7888775   67899999999  89999999999888888999998887765432    2478886 5666899999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2207         289 QSYERWMKAMREA  301 (305)
Q Consensus       289 e~~~~Wi~al~~a  301 (305)
                      ++.+.|+.||+.|
T Consensus        76 ~~f~~Wv~aL~~a   88 (89)
T PF15409_consen   76 EDFQRWVSALQKA   88 (89)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999876

>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain

Probab=99.44  E-value=1.4e-12  Score=94.39  Aligned_cols=92  Identities=23%  Similarity=0.411  Sum_probs=77.6

Q ss_pred             ceeeeeeecc----CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccc-cCCcceeEEEEeCCce------
Q psy2207         211 QHSGWLHKKS----GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE-QDNFKYVFQLKHQGQD------  279 (305)
Q Consensus       211 ~~~G~L~~~~----~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~-~~~~~~~F~l~~~~~~------  279 (305)
                      +..|||....    +..-|++||||++.+|+||+...+..|.+.|||.+..+...+. -.+++|+|+|+.+..+      
T Consensus         2 irkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~eeKE~kyilpLdnLk~Rdve~gf~sk~~~FeLfnpd~rnvykd~   81 (110)
T cd01256           2 IRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEEKEKKYMLPLDGLKLRDIEGGFMSRNHKFALFYPDGRNVYKDY   81 (110)
T ss_pred             eeeeeEEeeccceecCCCcceEEEEecceeeeecccccccccceeeccccEEEeecccccCCCcEEEEEcCcccccccch
Confidence            5678988776    4567999999999999999999999999999999988875443 2577899999976543      


Q ss_pred             -eEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         280 -PLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       280 -~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                       .+-++|+|++++..|.+.+-.|-
T Consensus        82 k~lel~~~~~e~vdswkasflrag  105 (110)
T cd01256          82 KQLELGCETLEEVDSWKASFLRAG  105 (110)
T ss_pred             heeeecCCCHHHHHHHHHHHHhcc
Confidence             67899999999999999987764

Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain

Probab=99.44  E-value=1.3e-12  Score=101.98  Aligned_cols=80  Identities=13%  Similarity=0.427  Sum_probs=67.2

Q ss_pred             CCCceEEEEEEECCEEEEEccCccCccceEEEe-cCeEEEEcccc-----------CCcceeEEEEeCCceeEEEEcCCH
Q psy2207         221 GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPV-LGYELEALNEQ-----------DNFKYVFQLKHQGQDPLVFGADNE  288 (305)
Q Consensus       221 ~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L-~~~~v~~~~~~-----------~~~~~~F~l~~~~~~~~~f~a~s~  288 (305)
                      ...|++|||+|+++.|.||+++.+..+.+.|.| .++.|......           ....+.|.|. +.+|+|.|.|+|+
T Consensus        30 ~~~w~kRWFvlr~s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~-t~~R~~~l~a~s~  108 (121)
T cd01254          30 CDRWQKRWFIVKESFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKIT-NSNRSLKLKCKSS  108 (121)
T ss_pred             ccCCcceeEEEeCCEEEEEcCCCCCceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEE-cCCcEEEEEeCCH
Confidence            347999999999999999999999999999999 56766643331           3456899997 5567899999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2207         289 QSYERWMKAMREA  301 (305)
Q Consensus       289 e~~~~Wi~al~~a  301 (305)
                      .++++|+++|+.|
T Consensus       109 ~~~~~Wi~~i~~a  121 (121)
T cd01254         109 RKLKQWMASIEDA  121 (121)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999999876

Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A

Probab=99.42  E-value=2.5e-12  Score=100.14  Aligned_cols=91  Identities=27%  Similarity=0.455  Sum_probs=65.5

Q ss_pred             eeeeeeecc------------CCCceEEEEEEECCEEEEEccCc--------------cCccceEEEecCeEEEEccccC
Q psy2207         212 HSGWLHKKS------------GRNWKRYWFVLKDQVMYKYKASE--------------DIKALLSIPVLGYELEALNEQD  265 (305)
Q Consensus       212 ~~G~L~~~~------------~~~wkrrw~vL~~~~L~~y~~~~--------------d~~p~~~i~L~~~~v~~~~~~~  265 (305)
                      ++|||+++.            .+.|+..|+||++..|++|+...              ...|.+.|.|.++.+.+..+..
T Consensus         2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY~   81 (119)
T PF15410_consen    2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDYT   81 (119)
T ss_dssp             -EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTBT
T ss_pred             ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCcccc
Confidence            457776653            45799999999999999999832              1234567999988888877777


Q ss_pred             CcceeEEEEeCCceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         266 NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       266 ~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      .++|+|.|...++..|.|+|.|+++|+.||.+|.-++
T Consensus        82 Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A  118 (119)
T PF15410_consen   82 KRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYAA  118 (119)
T ss_dssp             TCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred             cCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence            8899999998888899999999999999999998765

>smart00233 PH Pleckstrin homology domain

Probab=99.41  E-value=7.3e-12  Score=92.94  Aligned_cols=92  Identities=29%  Similarity=0.556  Sum_probs=78.7

Q ss_pred             ceeeeeeecc---CCCceEEEEEEECCEEEEEccCcc---CccceEEEecCeEEEEccccC--CcceeEEEEeCCceeEE
Q psy2207         211 QHSGWLHKKS---GRNWKRYWFVLKDQVMYKYKASED---IKALLSIPVLGYELEALNEQD--NFKYVFQLKHQGQDPLV  282 (305)
Q Consensus       211 ~~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~~~~d---~~p~~~i~L~~~~v~~~~~~~--~~~~~F~l~~~~~~~~~  282 (305)
                      ++.|||.++.   ...|+++|++|.++.|++|+...+   ..+.+.|+|.++.+.......  ..+++|.|.......|+
T Consensus         2 ~~~G~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~~~~~~~   81 (102)
T smart00233        2 IKEGWLYKKSGGKKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGITVREAPDPDSAKKPHCFEIKTADRRSYL   81 (102)
T ss_pred             ceeEEEEEeCCCccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcCEEEeCCCCccCCCceEEEEEecCCceEE
Confidence            5789999887   568999999999999999998766   577899999998877655432  45799999987776799


Q ss_pred             EEcCCHHHHHHHHHHHHHHH
Q psy2207         283 FGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       283 f~a~s~e~~~~Wi~al~~a~  302 (305)
                      |.|+|++++..|+.+|+.++
T Consensus        82 f~~~s~~~~~~W~~~i~~~~  101 (102)
T smart00233       82 LQAESEEEREEWVDALRKAI  101 (102)
T ss_pred             EEcCCHHHHHHHHHHHHHhh
Confidence            99999999999999999875

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain

Probab=99.39  E-value=6.8e-12  Score=94.07  Aligned_cols=92  Identities=23%  Similarity=0.363  Sum_probs=75.9

Q ss_pred             ceeeeeeecc-CCCceEEEEEEECCEEEEEccCccC---ccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcC
Q psy2207         211 QHSGWLHKKS-GRNWKRYWFVLKDQVMYKYKASEDI---KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGAD  286 (305)
Q Consensus       211 ~~~G~L~~~~-~~~wkrrw~vL~~~~L~~y~~~~d~---~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~  286 (305)
                      +..|+|.|.. +..|.|+||.+.|..||+.....+.   .+.+.|+|.+..|...++..+.+|+|+|+. .++.|.++|+
T Consensus         3 ikEG~L~K~~~k~~~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~V~~~~~~~~~~~~F~I~~-~~ks~~l~A~   81 (99)
T cd01220           3 IRQGCLLKLSKKGLQQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGMLTEESEHEWGVPHCFTIFG-GQCAITVAAS   81 (99)
T ss_pred             eeEEEEEEEeCCCCceEEEEEccceEEEEEeecCCCceEEEEEEEEcCceEEeeccCCcCCceeEEEEc-CCeEEEEECC
Confidence            5789999987 6688899999999888887765433   578999999999876554446679999984 5567999999


Q ss_pred             CHHHHHHHHHHHHHHHc
Q psy2207         287 NEQSYERWMKAMREATT  303 (305)
Q Consensus       287 s~e~~~~Wi~al~~a~~  303 (305)
                      |++++.+||++|++|+.
T Consensus        82 s~~Ek~~Wi~~i~~aI~   98 (99)
T cd01220          82 TRAEKEKWLADLSKAIA   98 (99)
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999999999874

Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;

Probab=99.37  E-value=2.4e-13  Score=91.74  Aligned_cols=54  Identities=44%  Similarity=0.974  Sum_probs=50.1

Q ss_pred             CcccccccccccccccccccccccceeccCccCCeecccC-CCCccccccHhhHH
Q psy2207          84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY-KKFRNFRVCEECYH  137 (305)
Q Consensus        84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~-~~~~~~rvC~~C~~  137 (305)
                      +..|+.|+.+|+++.|+|||+.||.+||..|+.++..++. .+.++.|||..||.
T Consensus         2 ~~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~~~~~~~rvC~~C~~   56 (57)
T cd00065           2 ASSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIPLPSMGGGKPVRVCDSCYE   56 (57)
T ss_pred             cCcCcccCccccCCccccccCcCcCCcChHHcCCeeecCcccCCCccEeChHHhC
Confidence            4689999999999999999999999999999999999876 57889999999985

>KOG1841|consensus

Probab=99.37  E-value=1.1e-13  Score=136.74  Aligned_cols=69  Identities=48%  Similarity=0.869  Sum_probs=63.6

Q ss_pred             cccCcCCCCCeeeecCCCcccccccccccccccccccccccceeccCccCCeecccCCCCccccccHhh
Q psy2207          67 PELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEEC  135 (305)
Q Consensus        67 ~~~~~~~~~p~w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C  135 (305)
                      +...+|.+.|.|+||+..+.||+|.+.|++++||||||+||+|+|+-|.+.+..|.|......|||..|
T Consensus       540 pe~~lgkkqP~wvpdse~pncm~clqkft~ikrrhhcRacgkVlcgvccnek~~leyl~e~~~rv~nV~  608 (1287)
T KOG1841|consen  540 PEGGLGKKQPSWVPDSEAPNCMDCLQKFTPIKRRHHCRACGKVLCGVCCNEKSALEYLSESEGRVSNVD  608 (1287)
T ss_pred             cccccCCCCCccCccccCchHHHHHhhcccccccccchhccceeehhhcchhhhhhhcCcccccccccc
Confidence            344578899999999999999999999999999999999999999999999999999988888888766

>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C

Probab=99.34  E-value=2.8e-11  Score=93.15  Aligned_cols=89  Identities=22%  Similarity=0.411  Sum_probs=53.4

Q ss_pred             eeeeeeecc---CCCceEEEEEEE-CCEEEEEccCcc-------------CccceEEEe----cCeEEEE--ccccCCcc
Q psy2207         212 HSGWLHKKS---GRNWKRYWFVLK-DQVMYKYKASED-------------IKALLSIPV----LGYELEA--LNEQDNFK  268 (305)
Q Consensus       212 ~~G~L~~~~---~~~wkrrw~vL~-~~~L~~y~~~~d-------------~~p~~~i~L----~~~~v~~--~~~~~~~~  268 (305)
                      ++|||++.+   .+.|++|||+|. ++.|.||+.+.+             ....+.+..    .......  ........
T Consensus         1 k~G~l~K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (112)
T PF15413_consen    1 KEGYLYKWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEIHL   80 (112)
T ss_dssp             EEEEEEE--TTS-S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-SS
T ss_pred             CCceEEEecCCCCcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCcCC
Confidence            579999998   689999999999 999999999432             222222221    1111111  11112233


Q ss_pred             eeEEEEeCCceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207         269 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREA  301 (305)
Q Consensus       269 ~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a  301 (305)
                      ..|.|. ++.++|+|.|++.++...|++||++|
T Consensus        81 ~~~~i~-T~~kt~~l~~~t~~d~~~Wi~aL~~~  112 (112)
T PF15413_consen   81 KVFSIF-TPTKTFHLRCETREDRYDWIEALQEA  112 (112)
T ss_dssp             EEEEEE--SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred             CCcEEE-CCCcEEEEEECCHHHHHHHHHHHHhC
Confidence            577775 55678999999999999999999886

>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain

Probab=99.33  E-value=2.8e-12  Score=93.68  Aligned_cols=94  Identities=27%  Similarity=0.474  Sum_probs=74.0

Q ss_pred             ceeeeeeecc---CCCceEEEEEEECCEEEEEc----cCccCccceEEEecCeEEEEcccc----------CCcceeEEE
Q psy2207         211 QHSGWLHKKS---GRNWKRYWFVLKDQVMYKYK----ASEDIKALLSIPVLGYELEALNEQ----------DNFKYVFQL  273 (305)
Q Consensus       211 ~~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~----~~~d~~p~~~i~L~~~~v~~~~~~----------~~~~~~F~l  273 (305)
                      .++|||++.+   .+.|++|||+|.+-.-|.|.    .++...|...|.|.|++|...+..          .+..|.|..
T Consensus         3 k~sGyL~k~Gg~~~KkWKKRwFvL~qvsQYtfamcsy~ekks~P~e~~qldGyTvDy~~~~~~~~~~~~~~~gg~~ff~a   82 (117)
T cd01234           3 KHCGYLYAIGKNVWKKWKKRFFVLVQVSQYTFAMCSYREKKAEPTEFIQLDGYTVDYMPESDPDPNSELSLQGGRHFFNA   82 (117)
T ss_pred             ceeEEEEeccchhhhhhheeEEEEEchhHHHHHHHhhhhhcCCchhheeecceEEeccCCCCCCcccccccccchhhhhe
Confidence            4899999998   67999999999975544443    244567999999999999854332          256688888


Q ss_pred             EeCCceeEEEEcCCHHHHHHHHHHHHHHHcCC
Q psy2207         274 KHQGQDPLVFGADNEQSYERWMKAMREATTLS  305 (305)
Q Consensus       274 ~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~~s  305 (305)
                      +.. +....|+++++.++..|++||=.|+..|
T Consensus        83 vke-gd~~~fa~~de~~r~lwvqa~yratgqs  113 (117)
T cd01234          83 VKE-GDELKFATDDENERHLWVQAMYRATGQS  113 (117)
T ss_pred             ecc-CcEEEEeccchHHHHHHHHHHHHHcCcc
Confidence            744 4569999999999999999998887543

CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3531|consensus

Probab=99.33  E-value=1.1e-12  Score=126.42  Aligned_cols=92  Identities=33%  Similarity=0.693  Sum_probs=80.9

Q ss_pred             ceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEcccc--CCcceeEEEEeCCceeEEEEcC
Q psy2207         211 QHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ--DNFKYVFQLKHQGQDPLVFGAD  286 (305)
Q Consensus       211 ~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~--~~~~~~F~l~~~~~~~~~f~a~  286 (305)
                      .++|||..+-  ...|++.|.|....+|++|++.+|..|+.++||.||.|.++.+.  ..+.++|.|...+. +|+|+|+
T Consensus       925 qLsg~LlrkfknssgwqkLwvvft~fcl~fyKS~qD~~~laslPlLgysvs~P~~~d~i~K~~vfkl~fk~h-vyffrae 1003 (1036)
T KOG3531|consen  925 QLSGYLLRKFKNSSGWQKLWVVFTNFCLFFYKSHQDSEPLASLPLLGYSVSIPAEPDPIQKDYVFKLKFKSH-VYFFRAE 1003 (1036)
T ss_pred             hhhHHHHHHhhccccceeeeeeecceeeEeecccccccccccccccccccCCCCCCCCcchhheeeeehhhh-HHHHhhh
Confidence            6899998765  66899999999999999999999999999999999999975543  34569999987776 5999999


Q ss_pred             CHHHHHHHHHHHHHHHc
Q psy2207         287 NEQSYERWMKAMREATT  303 (305)
Q Consensus       287 s~e~~~~Wi~al~~a~~  303 (305)
                      +....++|++.|+.|..
T Consensus      1004 s~yt~~rw~evi~~a~~ 1020 (1036)
T KOG3531|consen 1004 SYYTFERWMEVITDAPS 1020 (1036)
T ss_pred             hhhhhhhHHHHhhcCCc
Confidence            99999999999997764

>cd00821 PH Pleckstrin homology (PH) domain

Probab=99.32  E-value=1.5e-11  Score=90.26  Aligned_cols=90  Identities=31%  Similarity=0.615  Sum_probs=76.5

Q ss_pred             eeeeeeecc-C--CCceEEEEEEECCEEEEEccCcc---CccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEc
Q psy2207         212 HSGWLHKKS-G--RNWKRYWFVLKDQVMYKYKASED---IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGA  285 (305)
Q Consensus       212 ~~G~L~~~~-~--~~wkrrw~vL~~~~L~~y~~~~d---~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a  285 (305)
                      +.|||+++. .  ..|+++|++|.+..|++|....+   ..+.+.|+|.++.+.......+..++|.|...+...|+|.|
T Consensus         1 ~~G~l~~~~~~~~~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~~~   80 (96)
T cd00821           1 KEGYLLKKTGKLRKGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSGAEVEESPDDSGRKNCFEIRTPDGRSYLLQA   80 (96)
T ss_pred             CcchhhhhhChhhCCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCCCEEEECCCcCCCCcEEEEecCCCcEEEEEe
Confidence            368888877 3  68999999999999999998776   68899999999888776554446789999977757899999


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy2207         286 DNEQSYERWMKAMREA  301 (305)
Q Consensus       286 ~s~e~~~~Wi~al~~a  301 (305)
                      +|++++..|+.+|+.|
T Consensus        81 ~s~~~~~~W~~~l~~~   96 (96)
T cd00821          81 ESEEEREEWIEALQSA   96 (96)
T ss_pred             CCHHHHHHHHHHHhcC
Confidence            9999999999999764

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain

Probab=99.31  E-value=4.4e-11  Score=90.35  Aligned_cols=91  Identities=14%  Similarity=0.160  Sum_probs=73.3

Q ss_pred             ceeeeeeecc--CCCceEEEEEEECCEEEEEccCc-----cCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEE
Q psy2207         211 QHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASE-----DIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVF  283 (305)
Q Consensus       211 ~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~-----d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f  283 (305)
                      +.+|+|.+.+  .+.|+.|||.|-+..|.|++...     .....+.|+|.++.|.... +...+|+|.|.... +.|.+
T Consensus         3 ikeG~L~K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~~-~~~~~~~F~I~~~~-rsf~l   80 (101)
T cd01219           3 LKEGSVLKISSTTEKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEGD-NLERPHSFLVSGKQ-RCLEL   80 (101)
T ss_pred             ccceEEEEEecCCCCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeCC-CCCcCceEEEecCC-cEEEE
Confidence            5789999988  56899999999877888888532     2345678999998887542 34567999998554 78999


Q ss_pred             EcCCHHHHHHHHHHHHHHHc
Q psy2207         284 GADNEQSYERWMKAMREATT  303 (305)
Q Consensus       284 ~a~s~e~~~~Wi~al~~a~~  303 (305)
                      +|+|++++++||+||+.|+.
T Consensus        81 ~A~s~eEk~~W~~ai~~~i~  100 (101)
T cd01219          81 QARTQKEKNDWVQAIFSIID  100 (101)
T ss_pred             EcCCHHHHHHHHHHHHHHhh
Confidence            99999999999999999863

FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd00900 PH-like Pleckstrin homology-like domain

Probab=99.25  E-value=1.3e-10  Score=85.78  Aligned_cols=89  Identities=28%  Similarity=0.534  Sum_probs=73.4

Q ss_pred             eeeeeecc-C-----CCceEEEEEEECCEEEEEccCccCccc-eEEEecCeEEEEccccCCcceeEEEEeCC--ceeEEE
Q psy2207         213 SGWLHKKS-G-----RNWKRYWFVLKDQVMYKYKASEDIKAL-LSIPVLGYELEALNEQDNFKYVFQLKHQG--QDPLVF  283 (305)
Q Consensus       213 ~G~L~~~~-~-----~~wkrrw~vL~~~~L~~y~~~~d~~p~-~~i~L~~~~v~~~~~~~~~~~~F~l~~~~--~~~~~f  283 (305)
                      .|||.+.+ .     ..|+++|++|.+..|++|+...+..+. +.+++.+..+.......+.+++|.|....  ...|.|
T Consensus         2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~~~~~   81 (99)
T cd00900           2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEISVEEDPDGSDDPNCFAIVTKDRGRRVFVF   81 (99)
T ss_pred             ccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceEEEECCCCCCCCceEEEECCCCCcEEEEE
Confidence            57887776 2     689999999999999999998776665 68999887766554433467899999774  778999


Q ss_pred             EcCCHHHHHHHHHHHHHH
Q psy2207         284 GADNEQSYERWMKAMREA  301 (305)
Q Consensus       284 ~a~s~e~~~~Wi~al~~a  301 (305)
                      +|+|+++++.|+.+|+.|
T Consensus        82 ~~~~~~~~~~W~~al~~~   99 (99)
T cd00900          82 QADSEEEAQEWVEALQQA   99 (99)
T ss_pred             EcCCHHHHHHHHHHHhcC
Confidence            999999999999999864

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>KOG1090|consensus

Probab=99.19  E-value=7.5e-12  Score=122.34  Aligned_cols=96  Identities=25%  Similarity=0.344  Sum_probs=77.2

Q ss_pred             CCCCCceeeeeeecc--CCCceEEEEEEE--CCEEEEEccCccCccceEEEecCeEEEE--ccccCCcceeEEEEeCCce
Q psy2207         206 NDSGSQHSGWLHKKS--GRNWKRYWFVLK--DQVMYKYKASEDIKALLSIPVLGYELEA--LNEQDNFKYVFQLKHQGQD  279 (305)
Q Consensus       206 ~~~~~~~~G~L~~~~--~~~wkrrw~vL~--~~~L~~y~~~~d~~p~~~i~L~~~~v~~--~~~~~~~~~~F~l~~~~~~  279 (305)
                      ..++.+..|||+|+|  .+.|+.|||||.  ...|+||..-.|.+|.|.|+|.....+.  .+...+.+-.|.|. +..+
T Consensus      1630 ~teNr~~eG~LyKrGA~lK~Wk~RwFVLd~~khqlrYYd~~edt~pkG~IdLaevesv~~~~~k~vdekgffdlk-tt~r 1708 (1732)
T KOG1090|consen 1630 PTENRIPEGYLYKRGAKLKLWKPRWFVLDPDKHQLRYYDDFEDTKPKGCIDLAEVESVALIGPKTVDEKGFFDLK-TTNR 1708 (1732)
T ss_pred             cccccCcccchhhcchhhcccccceeEecCCccceeeecccccccccchhhhhhhhhhcccCccccCccceeeee-hhhH
Confidence            345567899999999  899999999995  4799999999999999999996544432  22223444567776 5567


Q ss_pred             eEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         280 PLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       280 ~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      +|.|+|.+...+++|++.|+...
T Consensus      1709 vynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1709 VYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred             HHHHHhccchHHHHHHHHHHHhh
Confidence            89999999999999999998764

>KOG1842|consensus

Probab=99.10  E-value=1e-11  Score=112.38  Aligned_cols=69  Identities=35%  Similarity=0.889  Sum_probs=55.7

Q ss_pred             CCCeeeecCCCcccccccccccccccccccccccceeccCccCCee---cccC--------------------CCCcccc
Q psy2207          74 VAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLA---PLEY--------------------KKFRNFR  130 (305)
Q Consensus        74 ~~p~w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~---~l~~--------------------~~~~~~r  130 (305)
                      .-..|+.|+.+.-|..|..+|++++||||||.||.|+|..|+.+--   .++.                    ....+.|
T Consensus       170 svVpW~DDs~V~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~iSle~a~~ltsss~~dt~~e~~qq~~~lH~~~~~iR  249 (505)
T KOG1842|consen  170 SVVPWLDDSSVQFCPECANSFGLTRRRHHCRLCGRVMCRDCSKFISLEIAIGLTSSSASDTHFEPNQQKDDLHQHPQPIR  249 (505)
T ss_pred             ccccccCCCcccccccccchhhhHHHhhhhhhcchHHHHHHHHhcChHHHHHHhhccCCCCCcCcccCcccccCChhHhH
Confidence            3467999999999999999999999999999999999999997632   0000                    0123579


Q ss_pred             ccHhhHHHHHhc
Q psy2207         131 VCEECYHYLVQE  142 (305)
Q Consensus       131 vC~~C~~~~~~~  142 (305)
                      +|..|...+...
T Consensus       250 lC~hCl~~L~~R  261 (505)
T KOG1842|consen  250 LCMHCLDNLFRR  261 (505)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988854

>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain

Probab=99.08  E-value=2.2e-10  Score=85.91  Aligned_cols=46  Identities=20%  Similarity=0.317  Sum_probs=42.4

Q ss_pred             CeeecCCCc-CCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207           1 MKVCLPQTE-DYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus         1 m~v~~~~~~-~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      |+|+.+.++ +++|+|+|.+++|+|.|+|+|++||++||++|++||+
T Consensus        52 ~~V~~~~~~~~~~~~F~I~~~~ks~~l~A~s~~Ek~~Wi~~i~~aI~   98 (99)
T cd01220          52 MLTEESEHEWGVPHCFTIFGGQCAITVAASTRAEKEKWLADLSKAIA   98 (99)
T ss_pred             eEEeeccCCcCCceeEEEEcCCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence            678877774 7899999999999999999999999999999999986

Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain

Probab=99.07  E-value=3.3e-10  Score=85.40  Aligned_cols=49  Identities=18%  Similarity=0.269  Sum_probs=42.9

Q ss_pred             CeeecC-CCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy2207           1 MKVCLP-QTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENE   49 (305)
Q Consensus         1 m~v~~~-~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~   49 (305)
                      |.|... |++.++|+|+|.+++|||.|+|+|++||.+|+++|++||+...
T Consensus        53 ~~v~~~~d~~~~~n~f~I~~~~kSf~v~A~s~~eK~eWl~~i~~ai~~~l  102 (104)
T cd01218          53 VQVESIEDDGIERNGWIIKTPTKSFAVYAATETEKREWMLHINKCVTDLL  102 (104)
T ss_pred             eEEEecCCcccccceEEEecCCeEEEEEcCCHHHHHHHHHHHHHHHHHHh
Confidence            455444 4467899999999999999999999999999999999998754

Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain

Probab=99.04  E-value=3.2e-10  Score=85.65  Aligned_cols=46  Identities=30%  Similarity=0.551  Sum_probs=43.0

Q ss_pred             CeeecCCCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207           1 MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus         1 m~v~~~~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      |+|...++.+.+|+|.|.+++|+|.|+|+|++||++||++|+.+|+
T Consensus        55 ~~v~~~~~~~~~~~F~I~~~~rsf~l~A~s~eEk~~W~~ai~~~i~  100 (101)
T cd01219          55 MQVCEGDNLERPHSFLVSGKQRCLELQARTQKEKNDWVQAIFSIID  100 (101)
T ss_pred             EEEEeCCCCCcCceEEEecCCcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence            6788777888999999999999999999999999999999999986

FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain

Probab=98.76  E-value=1.5e-07  Score=70.41  Aligned_cols=90  Identities=14%  Similarity=0.389  Sum_probs=67.8

Q ss_pred             eeeeeeecc------CCCceEEEEEEECCEEEEEccCccC---ccceEEEec-CeEEEEcc-------ccCCcceeEEEE
Q psy2207         212 HSGWLHKKS------GRNWKRYWFVLKDQVMYKYKASEDI---KALLSIPVL-GYELEALN-------EQDNFKYVFQLK  274 (305)
Q Consensus       212 ~~G~L~~~~------~~~wkrrw~vL~~~~L~~y~~~~d~---~p~~~i~L~-~~~v~~~~-------~~~~~~~~F~l~  274 (305)
                      +.|||....      ++.|++.|.||.+..|.+|..+.+.   .|...+++. .+.|....       +....++.|+|.
T Consensus         2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I~   81 (112)
T cd01242           2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENSTPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQIL   81 (112)
T ss_pred             cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCCCcEEEEEccceeeeecccHHHeeecCcccCCeEEEEE
Confidence            678987654      2489999999999999999987763   466677773 34433211       224667999998


Q ss_pred             eCC-ceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207         275 HQG-QDPLVFGADNEQSYERWMKAMREA  301 (305)
Q Consensus       275 ~~~-~~~~~f~a~s~e~~~~Wi~al~~a  301 (305)
                      ..+ .+..+|-|+++++.++|+.+|.+-
T Consensus        82 ~~~~~~~lllLA~s~~ek~kWV~~L~~~  109 (112)
T cd01242          82 YANEARDLLLLAPQTDEQNKWVSRLVKK  109 (112)
T ss_pred             eCCccceEEEEeCCchHHHHHHHHHHHh
Confidence            643 467899999999999999999764

Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain

Probab=98.75  E-value=2.1e-07  Score=70.64  Aligned_cols=91  Identities=16%  Similarity=0.357  Sum_probs=68.0

Q ss_pred             ceeeeeeecc----CCCceEEEEEEECCEEEEEccCccC------ccceEEEe--cCeEEEEcc-------ccCCcceeE
Q psy2207         211 QHSGWLHKKS----GRNWKRYWFVLKDQVMYKYKASEDI------KALLSIPV--LGYELEALN-------EQDNFKYVF  271 (305)
Q Consensus       211 ~~~G~L~~~~----~~~wkrrw~vL~~~~L~~y~~~~d~------~p~~~i~L--~~~~v~~~~-------~~~~~~~~F  271 (305)
                      .+.|||....    ++.|++.|+||.+..|++|..+.+.      .+...|++  ..+.|....       .....++.|
T Consensus         3 ~~EGwvkvP~~~~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If   82 (122)
T cd01243           3 AYEGHVKIPKPGGVKKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIF   82 (122)
T ss_pred             cceeeEeccCCCCcccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEE
Confidence            5889997655    5789999999999999999987753      23455677  345554222       224567899


Q ss_pred             EEEeC------CceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207         272 QLKHQ------GQDPLVFGADNEQSYERWMKAMREA  301 (305)
Q Consensus       272 ~l~~~------~~~~~~f~a~s~e~~~~Wi~al~~a  301 (305)
                      +|...      ...+.+|-|+++.+.++|+.||..-
T Consensus        83 ~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l  118 (122)
T cd01243          83 RVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL  118 (122)
T ss_pred             EEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence            99752      3357899999999999999999753

MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain

Probab=98.74  E-value=3.9e-08  Score=73.60  Aligned_cols=90  Identities=24%  Similarity=0.401  Sum_probs=62.3

Q ss_pred             eeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccc---eEEEecCeEEEEcccc-----CCcceeEEEEeCC----
Q psy2207         212 HSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKAL---LSIPVLGYELEALNEQ-----DNFKYVFQLKHQG----  277 (305)
Q Consensus       212 ~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~---~~i~L~~~~v~~~~~~-----~~~~~~F~l~~~~----  277 (305)
                      +.|+|+.+.  ++.|+++||+|+..-|||+--.....+.   ....+.+..|-..-..     .-.+|+|.|.++.    
T Consensus         2 ~~g~LylK~~gkKsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~q~~   81 (114)
T cd01259           2 MEGPLYLKADGKKSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGDQSK   81 (114)
T ss_pred             ccceEEEccCCCccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEeccccCcc
Confidence            679999987  8899999999999999887655433332   2233444444322110     1234888886532    


Q ss_pred             --ceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207         278 --QDPLVFGADNEQSYERWMKAMREA  301 (305)
Q Consensus       278 --~~~~~f~a~s~e~~~~Wi~al~~a  301 (305)
                        ...-+|+|||++.++.|+.||+-|
T Consensus        82 ~s~~ik~lCaeDe~t~~~W~ta~Ri~  107 (114)
T cd01259          82 GSQSIKYLCAEDLPTLDRWLTAIRIA  107 (114)
T ss_pred             cchhheeeccCCHHHHHHHHHHHHHH
Confidence              234689999999999999999865

Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1843|consensus

Probab=98.73  E-value=3.1e-09  Score=95.58  Aligned_cols=73  Identities=19%  Similarity=0.234  Sum_probs=64.5

Q ss_pred             ccCcCCCCCeeeecCCCccccccccccc-ccccccccccccceeccCccCCe--ecccCCCCccccccHhhHHHHH
Q psy2207          68 ELNLGKVAPLWIPDSRVSMCQRCTSVFT-VTFRRHHCRACGKVVCGPCSDYL--APLEYKKFRNFRVCEECYHYLV  140 (305)
Q Consensus        68 ~~~~~~~~p~w~~d~~~~~C~~C~~~f~-~~~rrhhCr~cg~v~C~~Cs~~~--~~l~~~~~~~~rvC~~C~~~~~  140 (305)
                      ...++..+|+|.+++....||.|..+|+ ++.||||||.||.++|-.|+.-.  ++.|.-...++|||+.|+..+.
T Consensus       144 ~asl~~~ap~f~yskskglfagvSvegsaI~erR~anR~~yg~~cra~~ilsg~vp~p~a~d~l~RVldS~~~nl~  219 (473)
T KOG1843|consen  144 SASLGGEAPVFLYSKSKGLFAGVSVEGSAIIERREANRKFYGIFCRAKSILSGLVPVPFAADPLQRVLDSCAFNLE  219 (473)
T ss_pred             hhhhcCcCccccccccccceeeeecccceeeecchhhhhhcCccchhhhhhccCCCCCcccCCHHHHHhhHhhccC
Confidence            3445678999999999999999999999 78999999999999999999765  5556667899999999999994

>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain

Probab=98.71  E-value=3.3e-07  Score=69.11  Aligned_cols=92  Identities=16%  Similarity=0.242  Sum_probs=68.8

Q ss_pred             ceeeeeeeccCCCceEEEEEEECCEEEEEcc---CccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCC
Q psy2207         211 QHSGWLHKKSGRNWKRYWFVLKDQVMYKYKA---SEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADN  287 (305)
Q Consensus       211 ~~~G~L~~~~~~~wkrrw~vL~~~~L~~y~~---~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s  287 (305)
                      +..|-|.+..++..+.|+|.|=...|.|-+.   .+.....+.++|.+..|....+....+++|.|..+ .++|.+.|+|
T Consensus         5 i~eG~L~K~~rk~~~~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~~v~~~~d~~~~~n~f~I~~~-~kSf~v~A~s   83 (104)
T cd01218           5 VGEGVLTKMCRKKPKQRQFFLFNDILVYGNIVISKKKYNKQHILPLEGVQVESIEDDGIERNGWIIKTP-TKSFAVYAAT   83 (104)
T ss_pred             EecCcEEEeecCCCceEEEEEecCEEEEEEeecCCceeeEeeEEEccceEEEecCCcccccceEEEecC-CeEEEEEcCC
Confidence            4678888777666677788886666665332   11234567899999888765544456799999855 5679999999


Q ss_pred             HHHHHHHHHHHHHHHc
Q psy2207         288 EQSYERWMKAMREATT  303 (305)
Q Consensus       288 ~e~~~~Wi~al~~a~~  303 (305)
                      +++..+|+++|.+|+.
T Consensus        84 ~~eK~eWl~~i~~ai~   99 (104)
T cd01218          84 ETEKREWMLHINKCVT   99 (104)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998864

Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain

Probab=98.57  E-value=5.7e-07  Score=67.07  Aligned_cols=87  Identities=13%  Similarity=0.334  Sum_probs=60.2

Q ss_pred             eeeeeeecc----CCCceEEEEEEEC-C-EE---EEEcc-----CccCccceEEEecCeEEEEccccCCcceeEEEEeCC
Q psy2207         212 HSGWLHKKS----GRNWKRYWFVLKD-Q-VM---YKYKA-----SEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQG  277 (305)
Q Consensus       212 ~~G~L~~~~----~~~wkrrw~vL~~-~-~L---~~y~~-----~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~  277 (305)
                      +.|||+.+.    +..|.+.||.... + .+   .++..     .........|.|..|.+...+.. .++|+|+|....
T Consensus         1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~sc~~r~~~~~-dRRFCFei~~~~   79 (104)
T cd01249           1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLKSCSRRKTESI-DKRFCFDVEVEE   79 (104)
T ss_pred             CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEecccccccccCcccccceEEeeeeccccccCCc-cceeeEeeeecC
Confidence            369999886    4579999998854 2 32   22222     11122234566777777766543 678999997543


Q ss_pred             c-eeEEEEcCCHHHHHHHHHHHH
Q psy2207         278 Q-DPLVFGADNEQSYERWMKAMR  299 (305)
Q Consensus       278 ~-~~~~f~a~s~e~~~~Wi~al~  299 (305)
                      . .++.|.|+++.+...||+||.
T Consensus        80 ~~~~~~lQA~Se~~~~~Wi~A~d  102 (104)
T cd01249          80 KPGVITMQALSEKDRRLWIEAMD  102 (104)
T ss_pred             CCCeEEEEecCHHHHHHHHHhhc
Confidence            3 369999999999999999984

Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01264 PH_melted Melted pleckstrin homology (PH) domain

Probab=98.53  E-value=1e-07  Score=71.30  Aligned_cols=36  Identities=17%  Similarity=0.572  Sum_probs=33.2

Q ss_pred             CCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAI   45 (305)
Q Consensus        10 ~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai   45 (305)
                      +.+|+|+|.+|+|+|+|+|+|++|+++||++|+.|+
T Consensus        66 ~~~~~Fei~tp~rt~~l~A~se~e~e~WI~~i~~a~  101 (101)
T cd01264          66 SLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIAV  101 (101)
T ss_pred             ccCcEEEEEcCCceEEEEeCCHHHHHHHHHHHHhhC
Confidence            447999999999999999999999999999999773

Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain

Probab=98.51  E-value=2.1e-07  Score=71.04  Aligned_cols=43  Identities=26%  Similarity=0.529  Sum_probs=38.8

Q ss_pred             ecCCCcCCCceEEEEEe-ceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207           4 CLPQTEDYNNEFSVIAI-SRSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus         4 ~~~~~~~~~~~f~i~~~-~ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      ..+++++++|+|.|.+. +++|.|+|.|++||++||++|..++.
T Consensus        67 d~~d~~~~knaF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~~  110 (112)
T cd01261          67 DKPDSSEYKNAFEIILKDGNSVIFSAKNAEEKNNWMAALISVQT  110 (112)
T ss_pred             EcCCCcccCceEEEEcCCCCEEEEEECCHHHHHHHHHHHHHHhc
Confidence            45777889999999995 89999999999999999999998875

Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0690|consensus

Probab=98.49  E-value=1.8e-07  Score=82.98  Aligned_cols=96  Identities=17%  Similarity=0.389  Sum_probs=68.0

Q ss_pred             CCCCceeeeeeecc--CCCceEEEEEEE-CCEEEEEccCccCccceEEEecCeEEEEc---cccCCcceeEEEEeCCc--
Q psy2207         207 DSGSQHSGWLHKKS--GRNWKRYWFVLK-DQVMYKYKASEDIKALLSIPVLGYELEAL---NEQDNFKYVFQLKHQGQ--  278 (305)
Q Consensus       207 ~~~~~~~G~L~~~~--~~~wkrrw~vL~-~~~L~~y~~~~d~~p~~~i~L~~~~v~~~---~~~~~~~~~F~l~~~~~--  278 (305)
                      ...+++.|||+++|  -+.|..|||+|. ++.|.-|++..........||.++.|.-.   ....-+++.|.|..-.-  
T Consensus        12 ~~~vvkEgWlhKrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~p~pLNnF~v~~cq~m~~erPrPntFiiRcLQWTT   91 (516)
T KOG0690|consen   12 QEDVVKEGWLHKRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEVQPTPEPLNNFMVRDCQTMKTERPRPNTFIIRCLQWTT   91 (516)
T ss_pred             hhhhHHhhhHhhcchhhhcccceEEEEeeCCceEeeccCCccCCCCcccccchhhhhhhhhhccCCCCceEEEEeeeeee
Confidence            34568999999999  889999999994 78999998754322233355555544311   11234678898875322  


Q ss_pred             -eeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         279 -DPLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       279 -~~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                       ..-.|.+++.+++++|+.||+..+
T Consensus        92 VIERTF~ves~~eRq~W~~AIq~vs  116 (516)
T KOG0690|consen   92 VIERTFYVESAEERQEWIEAIQAVS  116 (516)
T ss_pred             eeeeeeecCCHHHHHHHHHHHHHHh
Confidence             234799999999999999998765

>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain

Probab=98.49  E-value=1.1e-06  Score=66.23  Aligned_cols=89  Identities=16%  Similarity=0.358  Sum_probs=68.7

Q ss_pred             eeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEcccc-----CCcceeEEEEeCCceeEEEE
Q psy2207         212 HSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ-----DNFKYVFQLKHQGQDPLVFG  284 (305)
Q Consensus       212 ~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~-----~~~~~~F~l~~~~~~~~~f~  284 (305)
                      ++||+-.-.  -..|||+|+.|....+.+|.++...++...|||..+..+.....     ...+|+|+|.+ ...+|+.+
T Consensus         2 kEGWmVHyT~~d~~rKRhYWrLDsK~Itlf~~e~~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T-~~~vY~VG   80 (117)
T cd01239           2 KEGWMVHYTSSDNRRKKHYWRLDSKAITLYQEESGSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIRT-TTNVYFVG   80 (117)
T ss_pred             ccceEEEEecCccceeeeEEEecCCeEEEEEcCCCCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEEe-cCEEEEec
Confidence            578885443  56799999999999999999999999999999977655432211     35679999996 44567775


Q ss_pred             cC--------------------CHHHHHHHHHHHHHH
Q psy2207         285 AD--------------------NEQSYERWMKAMREA  301 (305)
Q Consensus       285 a~--------------------s~e~~~~Wi~al~~a  301 (305)
                      .+                    ..+.++.|-.||+.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA  117 (117)
T cd01239          81 GEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA  117 (117)
T ss_pred             ccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence            53                    456789999999876

Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain

Probab=98.47  E-value=3.3e-07  Score=68.01  Aligned_cols=43  Identities=19%  Similarity=0.352  Sum_probs=40.4

Q ss_pred             eecCCCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207           3 VCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAI   45 (305)
Q Consensus         3 v~~~~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai   45 (305)
                      +.++|++..+|+|.|.++.+||.++|+|+++|.+|++.|++|+
T Consensus        56 ~ni~D~~~~kNafki~t~~~s~i~qaes~~~K~eWl~~le~a~   98 (100)
T cd01226          56 VNVKDRENAKKVLKLLIFPESRIYQCESARIKTEWFEELEQAK   98 (100)
T ss_pred             EecCCCcCcCceEEEEeCCccEEEEeCCHHHHHHHHHHHHHHh
Confidence            4568889999999999999999999999999999999999987

Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain

Probab=98.46  E-value=3.5e-06  Score=64.35  Aligned_cols=93  Identities=16%  Similarity=0.264  Sum_probs=68.0

Q ss_pred             ceeeeeeecc--CCCceEEEEEEECCEEEEEccCcc-----------CccceEEEecCeEEEEccccCCcceeEEEEeCC
Q psy2207         211 QHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASED-----------IKALLSIPVLGYELEALNEQDNFKYVFQLKHQG  277 (305)
Q Consensus       211 ~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d-----------~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~  277 (305)
                      +++|-|.+..  .+..+.|++-|=++.|.|-+...+           ..-.+.++|..+.|...++....+++|.|....
T Consensus         5 I~EG~L~ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~~~knaF~I~~~~   84 (112)
T cd01261           5 IMEGTLTRVGPSKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSSEYKNAFEIILKD   84 (112)
T ss_pred             cccCcEEEEecccCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCcccCceEEEEcCC
Confidence            5677777665  456777877777777766664322           112345888888887655555567999999755


Q ss_pred             ceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         278 QDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       278 ~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      ++.|.|+|.|+++.++||++|..+..
T Consensus        85 ~~s~~l~Akt~eeK~~Wm~~l~~~~~  110 (112)
T cd01261          85 GNSVIFSAKNAEEKNNWMAALISVQT  110 (112)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHHhc
Confidence            66899999999999999999988753

Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3640|consensus

Probab=98.43  E-value=2.9e-07  Score=90.66  Aligned_cols=96  Identities=16%  Similarity=0.348  Sum_probs=74.7

Q ss_pred             CCCceeeeeeecc----CCCceEEEEEEECCEEEEEccCcc---CccceEEEecCeEEEEcc----ccCCcceeEEEEe-
Q psy2207         208 SGSQHSGWLHKKS----GRNWKRYWFVLKDQVMYKYKASED---IKALLSIPVLGYELEALN----EQDNFKYVFQLKH-  275 (305)
Q Consensus       208 ~~~~~~G~L~~~~----~~~wkrrw~vL~~~~L~~y~~~~d---~~p~~~i~L~~~~v~~~~----~~~~~~~~F~l~~-  275 (305)
                      ..+.+.|||+.-.    ...|.||||+|.++.+.|++.+.|   ..|.+.|+|..|+-....    +...+++.|.|.. 
T Consensus       988 idVEYrGFLtmfed~sgfGaWhRyWc~L~gg~I~fWk~PdDEkrK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~~ 1067 (1116)
T KOG3640|consen  988 IDVEYRGFLTMFEDGSGFGAWHRYWCALHGGEIKFWKYPDDEKRKVPIGQIDLTKCTSQSIEEARRDICARPNTFHIEVW 1067 (1116)
T ss_pred             cceeeeeeeeeeeccCCCchhhhhhHHhcCCeeeeecCcchhcccCcceeeehhhhhccccccchhhhccCCceeEEEee
Confidence            4467889998754    667999999999999999998776   568999999877654322    2246778999872 


Q ss_pred             ---C--------Cce-eEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         276 ---Q--------GQD-PLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       276 ---~--------~~~-~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                         .        ..+ -.+|+|||.++++.|+.+|..+..
T Consensus      1068 rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~ 1107 (1116)
T KOG3640|consen 1068 RPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLK 1107 (1116)
T ss_pred             cccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHH
Confidence               0        111 478999999999999999988764

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain

Probab=98.39  E-value=5.8e-07  Score=68.07  Aligned_cols=35  Identities=23%  Similarity=0.479  Sum_probs=33.0

Q ss_pred             CceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207          12 NNEFSVIAISRSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus        12 ~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      .++|.|.+++|+|.|+|+|++|+++||++|+.++.
T Consensus        67 ~~~F~i~t~~Rty~l~a~s~~e~~~Wi~ai~~v~~  101 (103)
T cd01251          67 WYGVTLVTPERKFLFACETEQDRREWIAAFQNVLS  101 (103)
T ss_pred             cceEEEEeCCeEEEEECCCHHHHHHHHHHHHHHhc
Confidence            35999999999999999999999999999999885

Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain

Probab=98.32  E-value=1e-06  Score=65.64  Aligned_cols=35  Identities=20%  Similarity=0.359  Sum_probs=32.6

Q ss_pred             CCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207          11 YNNEFSVIAISRSFTLRARSANERLEWIDAIQTAI   45 (305)
Q Consensus        11 ~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai   45 (305)
                      .++.|+|.+++|+|.|.|+|++|+++||++||.++
T Consensus        60 ~~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~~~   94 (95)
T cd01265          60 EKGRFEIHSNNEVIALKASSDKQMNYWLQALQSKR   94 (95)
T ss_pred             CCCEEEEEcCCcEEEEECCCHHHHHHHHHHHHhhc
Confidence            47899999999999999999999999999999763

PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1409|consensus

Probab=98.31  E-value=1.5e-07  Score=83.37  Aligned_cols=67  Identities=39%  Similarity=0.899  Sum_probs=56.4

Q ss_pred             CCCCeeeecCCCcccccccccccc-----------cccccccccccceeccCccCCeecccCCCC-ccccccHhhHHHHH
Q psy2207          73 KVAPLWIPDSRVSMCQRCTSVFTV-----------TFRRHHCRACGKVVCGPCSDYLAPLEYKKF-RNFRVCEECYHYLV  140 (305)
Q Consensus        73 ~~~p~w~~d~~~~~C~~C~~~f~~-----------~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~-~~~rvC~~C~~~~~  140 (305)
                      +..|.|+.++   .|+.|.++|.-           -.|.||||.||..||+.|++++...|.++. -..|+|+.||..+.
T Consensus       274 ~etpewl~s~---~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~  350 (404)
T KOG1409|consen  274 VETPEWLDSD---SCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIK  350 (404)
T ss_pred             ecCccccccc---hhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhh
Confidence            5689999754   69999998841           147899999999999999999988888774 47899999999998


Q ss_pred             hc
Q psy2207         141 QE  142 (305)
Q Consensus       141 ~~  142 (305)
                      ..
T Consensus       351 ~~  352 (404)
T KOG1409|consen  351 DE  352 (404)
T ss_pred             cC
Confidence            65

>KOG0521|consensus

Probab=98.27  E-value=1.6e-06  Score=86.97  Aligned_cols=119  Identities=18%  Similarity=0.227  Sum_probs=77.4

Q ss_pred             CCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHHhcccccccc---c-cccc--C-------CCcccCcCCCCC
Q psy2207          10 DYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNR---R-SLTQ--S-------SIPELNLGKVAP   76 (305)
Q Consensus        10 ~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~~~~~~~~~---~-~~~~--~-------~~~~~~~~~~~p   76 (305)
                      ....+|+|+++.|++.|||+|+.+..+||.+|+..|....+....-...   + ....  .       .+.........+
T Consensus       333 drr~CF~iiS~tks~~lQAes~~d~~~Wi~~i~nsi~s~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~s~~~s~~~~~~  412 (785)
T KOG0521|consen  333 DRRFCFEIISPTKSYLLQAESEKDCQDWISALQNSILSALNSAFLGQDSTGGRNTQSGHSSSASYSTITSANTSRERLNK  412 (785)
T ss_pred             cceeeEEEecCCcceEEecCchhHHHHHHHHHHHHHHHHHhccCcccccccCCCcccccccccccccccccccccccccc
Confidence            4678999999999999999999999999999999998866543211000   0 0000  0       000000000011


Q ss_pred             e---e---eecCCCcccccccccccccccccccccccceeccCccCCeecccCCCCcccccc
Q psy2207          77 L---W---IPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVC  132 (305)
Q Consensus        77 ~---w---~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC  132 (305)
                      .   +   -....+..|.+|+.+=.    .+.-.+-|+.+|..||+.|+.|+...++-..++
T Consensus       413 ~~~~~~~vq~~pgN~~c~Dcg~p~p----tw~S~NLgv~~CIecSGvhRslGvh~SkvrsLt  470 (785)
T KOG0521|consen  413 GISVIEEVQSVPGNAQCCDCGAPEP----TWASINLGVLLCIECSGVHRSLGVHISKVRSLT  470 (785)
T ss_pred             CcchhhhhhcCCchhhhhhcCCCCC----chHhhhhchhhHhhccccccccCchhhhhhhhh
Confidence            1   1   01123668999999444    445578899999999999999997666655554

>KOG2059|consensus

Probab=98.26  E-value=1.6e-06  Score=83.32  Aligned_cols=94  Identities=21%  Similarity=0.298  Sum_probs=75.3

Q ss_pred             CCceeeeeeecc--------CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEE--ccccCCcceeEEEEeCCc
Q psy2207         209 GSQHSGWLHKKS--------GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEA--LNEQDNFKYVFQLKHQGQ  278 (305)
Q Consensus       209 ~~~~~G~L~~~~--------~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~--~~~~~~~~~~F~l~~~~~  278 (305)
                      ++++.|+|..+.        ++.+|+|||-|+...|.|.+++.. .|...|||.++..+.  .+...+.+++|+|+++. 
T Consensus       563 p~v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~-q~~~~Ipl~nI~avEklee~sF~~knv~qVV~~d-  640 (800)
T KOG2059|consen  563 PVVLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGK-QPIYTIPLSNIRAVEKLEEKSFKMKNVFQVVHTD-  640 (800)
T ss_pred             CceecccceEeccccccchhhhhhhheEEEeccceeEEecCCcc-CcccceeHHHHHHHHHhhhhccCCCceEEEEecC-
Confidence            345555555443        467899999999999999998865 789999998876653  33345677999999887 


Q ss_pred             eeEEEEcCCHHHHHHHHHHHHHHHcC
Q psy2207         279 DPLVFGADNEQSYERWMKAMREATTL  304 (305)
Q Consensus       279 ~~~~f~a~s~e~~~~Wi~al~~a~~~  304 (305)
                      ++.+|.|.+-.+++.|+++|.+.+.+
T Consensus       641 rtly~Q~~n~vEandWldaL~kvs~~  666 (800)
T KOG2059|consen  641 RTLYVQAKNCVEANDWLDALRKVSCC  666 (800)
T ss_pred             cceeEecCCchHHHHHHHHHHHHhcc
Confidence            68999999999999999999987754

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

Probab=98.21  E-value=2.9e-06  Score=63.80  Aligned_cols=36  Identities=14%  Similarity=0.268  Sum_probs=32.7

Q ss_pred             CcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHH
Q psy2207           8 TEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQT   43 (305)
Q Consensus         8 ~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~   43 (305)
                      +...+|.|.|.|++|+|.|.|+|++|+++|+++|.+
T Consensus        65 d~k~~~~f~i~t~dr~f~l~aese~E~~~Wi~~i~~  100 (101)
T cd01257          65 DAKHRHLIALYTRDEYFAVAAENEAEQDSWYQALLE  100 (101)
T ss_pred             ccccCeEEEEEeCCceEEEEeCCHHHHHHHHHHHhh
Confidence            455679999999999999999999999999999964

Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.

>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain

Probab=98.19  E-value=8.1e-06  Score=61.62  Aligned_cols=87  Identities=13%  Similarity=0.347  Sum_probs=65.2

Q ss_pred             eeeeecc------CCCceEEEEEEECCEEEEEccCcc-----CccceEEEec--CeEEEE-ccccC---CcceeEEEEeC
Q psy2207         214 GWLHKKS------GRNWKRYWFVLKDQVMYKYKASED-----IKALLSIPVL--GYELEA-LNEQD---NFKYVFQLKHQ  276 (305)
Q Consensus       214 G~L~~~~------~~~wkrrw~vL~~~~L~~y~~~~d-----~~p~~~i~L~--~~~v~~-~~~~~---~~~~~F~l~~~  276 (305)
                      |||..+-      .+.|+.++++|++..|++|++..-     ..|....+|-  -..+.. .+..+   +++++|.|...
T Consensus         3 GW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irtg   82 (108)
T cd01258           3 GWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRTG   82 (108)
T ss_pred             eecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEcC
Confidence            6665542      368999999999999999998542     3466666664  333332 22223   67799999987


Q ss_pred             Cc-eeEEEEcCCHHHHHHHHHHHHH
Q psy2207         277 GQ-DPLVFGADNEQSYERWMKAMRE  300 (305)
Q Consensus       277 ~~-~~~~f~a~s~e~~~~Wi~al~~  300 (305)
                      .. ..++|+.|+..++..|..||..
T Consensus        83 ~~vesh~fsVEt~~dL~~W~raiv~  107 (108)
T cd01258          83 TQVENHYLRVETHRDLASWERALVR  107 (108)
T ss_pred             CceeeEEEEecCHHHHHHHHHHHhc
Confidence            77 7899999999999999999974

Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=98.17  E-value=3.4e-06  Score=63.47  Aligned_cols=35  Identities=26%  Similarity=0.463  Sum_probs=32.8

Q ss_pred             CCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207          11 YNNEFSVIAISRSFTLRARSANERLEWIDAIQTAI   45 (305)
Q Consensus        11 ~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai   45 (305)
                      .+|.|.|.+++|+|.|+|+|++|+++||++|+..+
T Consensus        64 ~~~~F~I~t~~rt~~~~A~s~~e~~~Wi~ai~~~~   98 (100)
T cd01233          64 GPNTFAVCTKHRGYLFQALSDKEMIDWLYALNPLY   98 (100)
T ss_pred             CCcEEEEECCCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence            57999999999999999999999999999998765

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A

Probab=98.16  E-value=2.4e-05  Score=58.88  Aligned_cols=89  Identities=16%  Similarity=0.226  Sum_probs=60.9

Q ss_pred             CCCCceeeeeeeccCCCceEEEEEEECC-EEEEEccCccCccceEEEec-CeEEEEccccCCcceeEEEEeCCceeEEEE
Q psy2207         207 DSGSQHSGWLHKKSGRNWKRYWFVLKDQ-VMYKYKASEDIKALLSIPVL-GYELEALNEQDNFKYVFQLKHQGQDPLVFG  284 (305)
Q Consensus       207 ~~~~~~~G~L~~~~~~~wkrrw~vL~~~-~L~~y~~~~d~~p~~~i~L~-~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~  284 (305)
                      .+.+++.|+|.++.+=..++||++|++. .|+|+..... .-.|.|++. ...+.....     ..|.|..+ .++|+|.
T Consensus        10 ge~Il~~g~v~K~kgl~~kkR~liLTd~PrL~Yvdp~~~-~~KGeI~~~~~l~v~~k~~-----~~F~I~tp-~RtY~l~   82 (104)
T PF14593_consen   10 GELILKQGYVKKRKGLFAKKRQLILTDGPRLFYVDPKKM-VLKGEIPWSKELSVEVKSF-----KTFFIHTP-KRTYYLE   82 (104)
T ss_dssp             T--EEEEEEEEEEETTEEEEEEEEEETTTEEEEEETTTT-EEEEEE--STT-EEEECSS-----SEEEEEET-TEEEEEE
T ss_pred             CCeEEEEEEEEEeeceEEEEEEEEEccCCEEEEEECCCC-eECcEEecCCceEEEEccC-----CEEEEECC-CcEEEEE
Confidence            4457899999998744489999999976 7777776544 556999996 445554321     27999866 5679888


Q ss_pred             cCCHHHHHHHHHHHHHHHc
Q psy2207         285 ADNEQSYERWMKAMREATT  303 (305)
Q Consensus       285 a~s~e~~~~Wi~al~~a~~  303 (305)
                      . .+..+..|+++|+++.+
T Consensus        83 d-~~~~A~~W~~~I~~~~~  100 (104)
T PF14593_consen   83 D-PEGNAQQWVEAIEEVKK  100 (104)
T ss_dssp             --TTS-HHHHHHHHHHHHH
T ss_pred             C-CCCCHHHHHHHHHHHHH
Confidence            6 45558889999998764

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=98.14  E-value=2.8e-06  Score=63.48  Aligned_cols=33  Identities=12%  Similarity=0.396  Sum_probs=30.9

Q ss_pred             CCceEEEEEeceEEEEEeCCHHHHHHHHHHHHH
Q psy2207          11 YNNEFSVIAISRSFTLRARSANERLEWIDAIQT   43 (305)
Q Consensus        11 ~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~   43 (305)
                      .+|.|+|.+++|+|.++|+|++|+++||++|+.
T Consensus        65 ~~~~fqivt~~r~~yi~a~s~~E~~~Wi~al~k   97 (98)
T cd01244          65 NVDIITIVCEDDTMQLQFEAPVEATDWLNALEK   97 (98)
T ss_pred             CCceEEEEeCCCeEEEECCCHHHHHHHHHHHhc
Confidence            358999999999999999999999999999975

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain

Probab=98.13  E-value=7.6e-06  Score=60.89  Aligned_cols=44  Identities=20%  Similarity=0.363  Sum_probs=36.5

Q ss_pred             CeeecCCCcCCCceEEEEEec---eEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207           1 MKVCLPQTEDYNNEFSVIAIS---RSFTLRARSANERLEWIDAIQTAI   45 (305)
Q Consensus         1 m~v~~~~~~~~~~~f~i~~~~---ksf~~~a~s~~ek~~W~~~i~~ai   45 (305)
                      |.|....+.+ +++|.|.+..   +++.|+|.|+++|+.|+++|+++|
T Consensus        49 l~i~e~~~~d-~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i   95 (97)
T cd01222          49 LMLVEHLPGE-PLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM   95 (97)
T ss_pred             eEEecCCCCC-CcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence            4455554444 8999998865   799999999999999999999987

Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain

Probab=98.07  E-value=6.8e-06  Score=62.06  Aligned_cols=33  Identities=9%  Similarity=0.281  Sum_probs=30.7

Q ss_pred             CCceEEEEEeceEEEEEeCCHHHHHHHHHHHHH
Q psy2207          11 YNNEFSVIAISRSFTLRARSANERLEWIDAIQT   43 (305)
Q Consensus        11 ~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~   43 (305)
                      .+|+|.|.+|+|+|.|.|+|++|+++||++|+.
T Consensus        70 ~~~~f~I~tp~R~f~l~Aete~E~~~Wi~~l~~  102 (104)
T cd01236          70 QKFSICILTPDKEHFIKAETKEEISWWLNMLMV  102 (104)
T ss_pred             CccEEEEECCCceEEEEeCCHHHHHHHHHHHHh
Confidence            468999999999999999999999999999863

Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

Probab=98.03  E-value=6e-06  Score=61.54  Aligned_cols=42  Identities=19%  Similarity=0.334  Sum_probs=35.9

Q ss_pred             eecCCCcCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHH
Q psy2207           3 VCLPQTEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTA   44 (305)
Q Consensus         3 v~~~~~~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~a   44 (305)
                      |......+.+++|.|.+++ |+|.|+|+|++|+++||++|+.|
T Consensus        54 v~~~~~~~k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~~   96 (96)
T cd01260          54 IESAKEVKKKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLITA   96 (96)
T ss_pred             EEEchhcCCceEEEECCCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence            4444445578999999999 99999999999999999999864

Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet

>PLN00188 enhanced disease resistance protein (EDR2); Provisional

Probab=98.00  E-value=4e-05  Score=75.01  Aligned_cols=94  Identities=16%  Similarity=0.297  Sum_probs=68.9

Q ss_pred             Cceeeeeeecc-----CCCceEEEEEEECCEEEEEccC--ccCccceEEEecC-eEEEEccc-c--CCcceeEEEEeC--
Q psy2207         210 SQHSGWLHKKS-----GRNWKRYWFVLKDQVMYKYKAS--EDIKALLSIPVLG-YELEALNE-Q--DNFKYVFQLKHQ--  276 (305)
Q Consensus       210 ~~~~G~L~~~~-----~~~wkrrw~vL~~~~L~~y~~~--~d~~p~~~i~L~~-~~v~~~~~-~--~~~~~~F~l~~~--  276 (305)
                      +.++|||+.-+     .....+|||||.+..|.|||..  .+..|+.+..+.+ +.|.-... .  .+--|+|.|+..  
T Consensus         4 ~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn~~~   83 (719)
T PLN00188          4 VVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKE   83 (719)
T ss_pred             ceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccccccceeeccCCCceEeecCceEEcCceEEEEEEecCCC
Confidence            46999999987     3457899999999999999973  3356777776744 44432111 1  223388888863  


Q ss_pred             CceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         277 GQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       277 ~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      ..+...|+|-|.+++.+|++||+.|+.
T Consensus        84 ~~~~~~~~a~~~eea~~W~~a~~~a~~  110 (719)
T PLN00188         84 KYHRITMAAFNIQEALIWKEKIESVID  110 (719)
T ss_pred             ccccEEEecCCHHHHHHHHHHHHHHHh
Confidence            334589999999999999999998864

>KOG3751|consensus

Probab=97.96  E-value=1.8e-05  Score=73.92  Aligned_cols=92  Identities=20%  Similarity=0.311  Sum_probs=59.9

Q ss_pred             Cceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceE---EEecCeEEE--Ecccc---CCcceeEEEEeC---
Q psy2207         210 SQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLS---IPVLGYELE--ALNEQ---DNFKYVFQLKHQ---  276 (305)
Q Consensus       210 ~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~---i~L~~~~v~--~~~~~---~~~~~~F~l~~~---  276 (305)
                      +.+.||||.+.  ++.|||.||||+..-|||+--.....|...   .+|.+-.|.  +....   .-.+|+|.|...   
T Consensus       317 pei~GfL~~K~dgkKsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~~f~~K~~~~~  396 (622)
T KOG3751|consen  317 PEIQGFLYLKEDGKKSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLADLHSSNVYTGIGGRKKYKSPTDYGFCIKPNKLR  396 (622)
T ss_pred             ccccceeeecccccccceeEEEEEecCcceEccCCCCCCchhhHHHHhcccCceEEeecchhccCCCCCceEEeeecccc
Confidence            57999999998  889999999999999988775544333221   222222222  22211   112355555421   


Q ss_pred             --CceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207         277 --GQDPLVFGADNEQSYERWMKAMREA  301 (305)
Q Consensus       277 --~~~~~~f~a~s~e~~~~Wi~al~~a  301 (305)
                        ....=+|+||++..+..|+.||+-+
T Consensus       397 ~~~r~lk~lCAEDe~t~~~WltAiRl~  423 (622)
T KOG3751|consen  397 NKRRFLKMLCAEDEQTRTCWLTAIRLL  423 (622)
T ss_pred             CcccceeeeecccchhHHHHHHHHHHH
Confidence              1223489999999999999999754

>KOG0705|consensus

Probab=97.96  E-value=4.3e-06  Score=78.80  Aligned_cols=107  Identities=21%  Similarity=0.289  Sum_probs=72.1

Q ss_pred             CCcCCCceEEEEE-eceEEEEEeCCHHHHHHHHHHHHHHHHHHHhccccccccc-ccccCCCcccCcCCCCCeeeecCCC
Q psy2207           7 QTEDYNNEFSVIA-ISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRR-SLTQSSIPELNLGKVAPLWIPDSRV   84 (305)
Q Consensus         7 ~~~~~~~~f~i~~-~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~w~~d~~~   84 (305)
                      .+++....|.|++ ..-+.+|.|.+-|||++|+++|+.-|...++.-++-+... ...+.+..  .+-    ..-....+
T Consensus       440 hndEEde~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIlaSlq~cessk~Ks~~~sqsea~--a~q----airn~rgn  513 (749)
T KOG0705|consen  440 HNDEEDECFEIVSNTGQTWHFEATTYEERDAWVQAIQSQILASLQSCESSKSKSRLTSQSEAM--ALQ----AIRNMRGN  513 (749)
T ss_pred             CCccccceEEEeccccchhhhhhcchhhHHHHHHHHHHHHHHHHhhhhhhcchhccchhhhHH--HHH----HHhcCcCC
Confidence            4556667999888 5668899999999999999999998877655433322211 00011100  000    00112346


Q ss_pred             cccccccccccccccccccccccceeccCccCCeecccC
Q psy2207          85 SMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY  123 (305)
Q Consensus        85 ~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~  123 (305)
                      ..|.+|+.+-+    .+.-.+.|.++|..||+.|+.|+.
T Consensus       514 ~~c~dc~~~n~----~wAslnlg~l~cieCsgihr~lgt  548 (749)
T KOG0705|consen  514 SHCVDCGTPNP----KWASLNLGVLMCIECSGIHRNLGT  548 (749)
T ss_pred             ceeeecCCCCc----ccccccCCeEEEEEchhhhhhhhh
Confidence            78999999554    456678899999999999999875

>KOG0932|consensus

Probab=97.95  E-value=2.2e-06  Score=80.40  Aligned_cols=93  Identities=25%  Similarity=0.411  Sum_probs=67.2

Q ss_pred             Cceeeeeeecc------------CCCceEEEEEEECCEEEEEccCccC-ccceE------EEecCeEEEEccccCCccee
Q psy2207         210 SQHSGWLHKKS------------GRNWKRYWFVLKDQVMYKYKASEDI-KALLS------IPVLGYELEALNEQDNFKYV  270 (305)
Q Consensus       210 ~~~~G~L~~~~------------~~~wkrrw~vL~~~~L~~y~~~~d~-~p~~~------i~L~~~~v~~~~~~~~~~~~  270 (305)
                      .-++|+|.++.            ++.|+..|.+|+|-+||+-+++... ..+..      |.+.-....+..+...++|+
T Consensus       506 ~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p~kalse~~lknavsvHHALAt~AtdY~KKp~V  585 (774)
T KOG0932|consen  506 TYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKPGKALSESDLKNAVSVHHALATPATDYSKKPHV  585 (774)
T ss_pred             hhhhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCcccchhhhhhhhhhhhhhhhcCCCcccccCCce
Confidence            35778887654            4579988999999999998865321 11111      22222223344445677899


Q ss_pred             EEEEeCCceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         271 FQLKHQGQDPLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       271 F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      |+|.....+.|.|+|.+.++|+.||..|.-++
T Consensus       586 f~lrtAdwrv~LFQaps~eEmqsWi~rIN~vA  617 (774)
T KOG0932|consen  586 FKLRTADWRVFLFQAPSQEEMQSWIERINLVA  617 (774)
T ss_pred             EEEEeccceeEEEeCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999997543

>cd01238 PH_Tec Tec pleckstrin homology (PH) domain

Probab=97.92  E-value=1.6e-05  Score=60.52  Aligned_cols=33  Identities=21%  Similarity=0.425  Sum_probs=31.0

Q ss_pred             CCceEEEEEeceEEEEEeCCHHHHHHHHHHHHH
Q psy2207          11 YNNEFSVIAISRSFTLRARSANERLEWIDAIQT   43 (305)
Q Consensus        11 ~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~   43 (305)
                      .++.|+|.++.|+|++.|+|++|+++||++|++
T Consensus        73 ~~~~F~i~t~~r~~yl~A~s~~er~~WI~ai~~  105 (106)
T cd01238          73 FKYPFQVVHDEGTLYVFAPTEELRKRWIKALKQ  105 (106)
T ss_pred             cCccEEEEeCCCeEEEEcCCHHHHHHHHHHHHh
Confidence            468999999999999999999999999999985

Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis

>KOG0521|consensus

Probab=97.91  E-value=6e-06  Score=82.90  Aligned_cols=92  Identities=21%  Similarity=0.477  Sum_probs=74.2

Q ss_pred             Cceeeeeeecc---CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcC
Q psy2207         210 SQHSGWLHKKS---GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGAD  286 (305)
Q Consensus       210 ~~~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~  286 (305)
                      ....|||+++.   .+.|+|+||-..++.+.|+..-.+......++|..+.|...+....+.++|+|+. ..++|+|+|+
T Consensus       274 ~~~~~~l~~k~~~~~~tw~r~~f~~q~~~l~~~~r~~~~~~~~~~dL~~csvk~~~~~~drr~CF~iiS-~tks~~lQAe  352 (785)
T KOG0521|consen  274 YRMEGYLRKKASNASKTWKRRWFSIQDGQLGYQHRGADAENVLIEDLRTCSVKPDAEQRDRRFCFEIIS-PTKSYLLQAE  352 (785)
T ss_pred             hhhhhhhhhhcccchhhHHhhhhhhhccccccccccccccccccccchhccccCCcccccceeeEEEec-CCcceEEecC
Confidence            35667888776   6789999999988777777655544446778888888887776657789999996 6678999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q psy2207         287 NEQSYERWMKAMREAT  302 (305)
Q Consensus       287 s~e~~~~Wi~al~~a~  302 (305)
                      ++.+.+.||.+|+..+
T Consensus       353 s~~d~~~Wi~~i~nsi  368 (785)
T KOG0521|consen  353 SEKDCQDWISALQNSI  368 (785)
T ss_pred             chhHHHHHHHHHHHHH
Confidence            9999999999998654

>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain

Probab=97.86  E-value=2.4e-05  Score=58.71  Aligned_cols=35  Identities=26%  Similarity=0.451  Sum_probs=31.8

Q ss_pred             CCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207          11 YNNEFSVIAISRSFTLRARSANERLEWIDAIQTAI   45 (305)
Q Consensus        11 ~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai   45 (305)
                      ..+.|.|.++.|+|.|+|+|++|+++||++|+++|
T Consensus        67 ~~~~f~i~t~~r~~~~~a~s~~e~~~Wi~ai~~~i  101 (101)
T cd01235          67 RKGFFDLKTSKRTYNFLAENINEAQRWKEKIQQCI  101 (101)
T ss_pred             CceEEEEEeCCceEEEECCCHHHHHHHHHHHHhhC
Confidence            34679999999999999999999999999999865

Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .

>KOG3543|consensus

Probab=97.85  E-value=3.8e-06  Score=79.84  Aligned_cols=99  Identities=26%  Similarity=0.454  Sum_probs=74.4

Q ss_pred             CCCCCceeeeeeecc---CCCceEEEEEEECCEEEEEcc----CccCccceEEEecCeEEEEcccc---CCcceeEEEEe
Q psy2207         206 NDSGSQHSGWLHKKS---GRNWKRYWFVLKDQVMYKYKA----SEDIKALLSIPVLGYELEALNEQ---DNFKYVFQLKH  275 (305)
Q Consensus       206 ~~~~~~~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~~----~~d~~p~~~i~L~~~~v~~~~~~---~~~~~~F~l~~  275 (305)
                      .+++.-++||||--|   .+.|++|||||..-.-|.|.-    ++...|...|.|.|++|...++.   .++.+.|.-+ 
T Consensus       460 kp~nmkhsgylyaig~nvwkrwkkrffvlvqvsqytfamcsyrekkaepqel~qldgytvdytdp~pglqgg~~ffnav-  538 (1218)
T KOG3543|consen  460 KPPNMKHSGYLYAIGRNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELIQLDGYTVDYTDPSPGLQGGKHFFNAV-  538 (1218)
T ss_pred             CCCccccceeehhhhhHHHHHhHhhEEEEEEhhhhhhHhhhhhhcccChHHHhhccCeeeccCCCCCccccchHHHHHh-
Confidence            345577999999988   678999999997544443331    33457888999999999854433   3455666665 


Q ss_pred             CCceeEEEEcCCHHHHHHHHHHHHHHHcCC
Q psy2207         276 QGQDPLVFGADNEQSYERWMKAMREATTLS  305 (305)
Q Consensus       276 ~~~~~~~f~a~s~e~~~~Wi~al~~a~~~s  305 (305)
                      ..+.+..|+.+++.++.-|++|+-.|+..|
T Consensus       539 kegdtvifasddeqdr~lwvqamyratgqs  568 (1218)
T KOG3543|consen  539 KEGDTVIFASDDEQDRHLWVQAMYRATGQS  568 (1218)
T ss_pred             ccCceEEeccCchhhhhHHHHHHHHhhCCc
Confidence            455679999999999999999998887543

>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain

Probab=97.85  E-value=0.00056  Score=51.67  Aligned_cols=92  Identities=14%  Similarity=0.172  Sum_probs=63.6

Q ss_pred             ceeeeeeecc-CCC-ceEEEEEEECCEEEEEccC---cc-CccceEEEecCeEEEEccccCC------cceeEEEEeCC-
Q psy2207         211 QHSGWLHKKS-GRN-WKRYWFVLKDQVMYKYKAS---ED-IKALLSIPVLGYELEALNEQDN------FKYVFQLKHQG-  277 (305)
Q Consensus       211 ~~~G~L~~~~-~~~-wkrrw~vL~~~~L~~y~~~---~d-~~p~~~i~L~~~~v~~~~~~~~------~~~~F~l~~~~-  277 (305)
                      +++|-|.+.+ .+. -+.|.+-|=++.|.|-+..   .+ ..-.+.|+|..+.|...++...      -.++|.|+... 
T Consensus         3 i~~Gel~~~s~~~g~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~~~   82 (109)
T cd01224           3 FLQGEATRQKQNKGWNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSEST   82 (109)
T ss_pred             eEeeeEEEEecccCCcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEEEcCC
Confidence            4677777665 222 2445666667777777742   22 2346778898888886543321      36899999855 


Q ss_pred             ceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         278 QDPLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       278 ~~~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      +..|.|+|.|.++.++||+||..-.
T Consensus        83 ~~~~~f~~Kt~e~K~~Wm~a~~~er  107 (109)
T cd01224          83 DEWYLFSFKSAERKHRWLSAFALER  107 (109)
T ss_pred             CeEEEEEECCHHHHHHHHHHHHHhh
Confidence            5679999999999999999997643

Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain

Probab=97.84  E-value=1.5e-05  Score=59.19  Aligned_cols=94  Identities=21%  Similarity=0.289  Sum_probs=67.7

Q ss_pred             CCceeeeeeecc---CCCceEEEEEEECCEEEEEccCccCccceEEEecCeE-EEEccccCCcceeEEEEeCCceeEEEE
Q psy2207         209 GSQHSGWLHKKS---GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYE-LEALNEQDNFKYVFQLKHQGQDPLVFG  284 (305)
Q Consensus       209 ~~~~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~-v~~~~~~~~~~~~F~l~~~~~~~~~f~  284 (305)
                      ++++.||+.+.|   ...|++|||-|=++.|-+|....+.. ...|.+.... |.+.........+..|...++..+++.
T Consensus         2 DcIvhGyi~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~~-~eLi~M~~i~~V~~e~~~iK~~~CI~ik~k~~~k~vlt   80 (116)
T cd01240           2 DCIVHGYIKKLGGPFLSQWQTRYFKLYPNRLELYGESEANK-PELITMDQIEDVSVEFQQIKEENCILLKIRDEKKIVLT   80 (116)
T ss_pred             ceEEeeehhhhCCHHHHHHHHHHheeCcceeeecccccccC-CcEEEeehhhhcchhheeeccCceEEEEEcCCceEEEe
Confidence            357899999998   67899999999999999976554433 2333333222 221111224446888888888889999


Q ss_pred             cCCHHHHHHHHHHHHHHHc
Q psy2207         285 ADNEQSYERWMKAMREATT  303 (305)
Q Consensus       285 a~s~e~~~~Wi~al~~a~~  303 (305)
                      ++++-...+|...|+.|-+
T Consensus        81 ~~d~i~l~qW~~elr~a~r   99 (116)
T cd01240          81 NSDEIELKQWKKELRDAHR   99 (116)
T ss_pred             cCCcHHHHHHHHHHHHHHH
Confidence            9999999999999987754

Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or

>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain

Probab=97.81  E-value=3.2e-05  Score=56.99  Aligned_cols=33  Identities=36%  Similarity=0.585  Sum_probs=31.4

Q ss_pred             CCceEEEEEeceEEEEEeCCHHHHHHHHHHHHH
Q psy2207          11 YNNEFSVIAISRSFTLRARSANERLEWIDAIQT   43 (305)
Q Consensus        11 ~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~   43 (305)
                      .++.|+|.+++|.|.|+|+|++|+++|+.+|+.
T Consensus        61 ~~~~f~i~~~~~~~~f~a~s~~~~~~Wi~al~~   93 (94)
T cd01250          61 RRFCFEVISPTKTWHFQADSEEERDDWISAIQE   93 (94)
T ss_pred             CceEEEEEcCCcEEEEECCCHHHHHHHHHHHhc
Confidence            678999999999999999999999999999975

Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain

Probab=97.79  E-value=0.0004  Score=51.64  Aligned_cols=78  Identities=13%  Similarity=0.267  Sum_probs=57.5

Q ss_pred             eEE-EEEEECCEEEEEcc-CccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         225 KRY-WFVLKDQVMYKYKA-SEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       225 krr-w~vL~~~~L~~y~~-~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      ++. .|.+.|..++-... .+...-...++|.+..|.-.++.+.-+++|.|.+..+ ++.|+|+|.++..+|++.|++|.
T Consensus        20 ~rv~~FLfND~Lvva~~~~~~ky~~~~~~~L~~i~V~ni~D~~~~kNafki~t~~~-s~i~qaes~~~K~eWl~~le~a~   98 (100)
T cd01226          20 QRVMLFLLNDRLIVGNINAAGKYVMESTYSLNSVAVVNVKDRENAKKVLKLLIFPE-SRIYQCESARIKTEWFEELEQAK   98 (100)
T ss_pred             ceEEEEEeccEEEEEEecccceEEEEEEEehHHeEEEecCCCcCcCceEEEEeCCc-cEEEEeCCHHHHHHHHHHHHHHh
Confidence            344 56666655555333 3334456789998888876555556689999986554 69999999999999999999986


Q ss_pred             c
Q psy2207         303 T  303 (305)
Q Consensus       303 ~  303 (305)
                      +
T Consensus        99 ~   99 (100)
T cd01226          99 R   99 (100)
T ss_pred             c
Confidence            5

Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=97.78  E-value=3.7e-05  Score=56.23  Aligned_cols=34  Identities=32%  Similarity=0.579  Sum_probs=31.6

Q ss_pred             CCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHH
Q psy2207          11 YNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTA   44 (305)
Q Consensus        11 ~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~a   44 (305)
                      .++.|.|.+++ +.|.|+|+|++|+++||.+|+.|
T Consensus        57 ~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a   91 (91)
T cd01246          57 DDKCFTIDTGGDKTLHLRANSEEERQRWVDALELA   91 (91)
T ss_pred             CCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHhC
Confidence            37999999999 99999999999999999999864

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain

Probab=97.78  E-value=5.5e-05  Score=55.82  Aligned_cols=33  Identities=27%  Similarity=0.521  Sum_probs=29.8

Q ss_pred             CCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHH
Q psy2207          11 YNNEFSVIAIS-RSFTLRARSANERLEWIDAIQT   43 (305)
Q Consensus        11 ~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~   43 (305)
                      -++.|+|.+.. |+|.|.|+|++|+++||++||+
T Consensus        57 ~~~~F~i~~~~~r~~~L~A~s~~e~~~Wi~al~~   90 (91)
T cd01247          57 DENRFDISVNENVVWYLRAENSQSRLLWMDSVVR   90 (91)
T ss_pred             CCCEEEEEeCCCeEEEEEeCCHHHHHHHHHHHhh
Confidence            36899997766 9999999999999999999985

Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt

>PLN02866 phospholipase D

Probab=97.78  E-value=0.00028  Score=71.92  Aligned_cols=80  Identities=20%  Similarity=0.378  Sum_probs=61.0

Q ss_pred             CCceEEEEEEECCEEEEEccCccCccceEEEecC---------eEEEEcccc---CCcceeEEEEeCCceeEEEEcCCHH
Q psy2207         222 RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLG---------YELEALNEQ---DNFKYVFQLKHQGQDPLVFGADNEQ  289 (305)
Q Consensus       222 ~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~---------~~v~~~~~~---~~~~~~F~l~~~~~~~~~f~a~s~e  289 (305)
                      ..|.++|++|+++.|.|...+.+..++..|.+..         ..+......   ....++|.|. .+.+.+.|.+.+..
T Consensus       216 ~~w~k~w~v~k~~~l~~~~~p~~~~~~~v~lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~-~~~r~l~l~~~s~~  294 (1068)
T PLN02866        216 DNWQKVWAVLKPGFLALLEDPFDAKPLDIIVFDVLPASNGNGEGQISLAKEIKERNPLRFGFKVT-CGNRSIRLRTKSSA  294 (1068)
T ss_pred             CchheeEEEEeccEEEEEecCCCCceeEEEEEecccccccCCCcceeecccccccCCCcceEEEe-cCceEEEEEECCHH
Confidence            4799999999999999998888888777765531         122222111   2345899997 55667999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2207         290 SYERWMKAMREAT  302 (305)
Q Consensus       290 ~~~~Wi~al~~a~  302 (305)
                      .+..|+.+|+.+.
T Consensus       295 ~~~~w~~ai~~~~  307 (1068)
T PLN02866        295 KVKDWVAAINDAG  307 (1068)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999886

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=97.74  E-value=0.00014  Score=70.04  Aligned_cols=95  Identities=17%  Similarity=0.259  Sum_probs=64.0

Q ss_pred             CCceeeeeeecc-CCCceEEEEEEECCEEEEEcc--Cc-cCccceEEEe-cCeEEEEcc--ccCCcceeEEEEeCCceeE
Q psy2207         209 GSQHSGWLHKKS-GRNWKRYWFVLKDQVMYKYKA--SE-DIKALLSIPV-LGYELEALN--EQDNFKYVFQLKHQGQDPL  281 (305)
Q Consensus       209 ~~~~~G~L~~~~-~~~wkrrw~vL~~~~L~~y~~--~~-d~~p~~~i~L-~~~~v~~~~--~~~~~~~~F~l~~~~~~~~  281 (305)
                      .....|||.+.+ ...|++|||.+.++.+.....  +. +......+.+ ....|.+.+  ....++++|.|.....+.+
T Consensus       376 Dv~~~G~l~k~~~~~~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv~~~~~~~~~~~~~i~~~~~~~~  455 (478)
T PTZ00267        376 DVTHGGYLYKYSSDMRWKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDVFPVPEVYSQKHPNQLVLWFNNGQKI  455 (478)
T ss_pred             CcccceEEeccCCCcchhhheEEecCCceEEEeccccccCCCCCccccHHHhcccccccHHhcCCCCceEEEEecCCcEE
Confidence            456889999887 556999999998655554432  21 1222223333 122233332  1335678999987666679


Q ss_pred             EEEcCCHHHHHHHHHHHHHHHc
Q psy2207         282 VFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       282 ~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      +|.++|++++++||.+|+.|..
T Consensus       456 ~~~~~~~~~~~~W~~~~~~~~~  477 (478)
T PTZ00267        456 IAYAKTAEDRDQWISKFQRACG  477 (478)
T ss_pred             EEecCChHHHHHHHHHHHHHhC
Confidence            9999999999999999999864

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain

Probab=97.74  E-value=4.5e-05  Score=56.89  Aligned_cols=33  Identities=24%  Similarity=0.424  Sum_probs=29.8

Q ss_pred             CCCceEEEEEece--EEEEEeCCHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAISR--SFTLRARSANERLEWIDAIQT   43 (305)
Q Consensus        10 ~~~~~f~i~~~~k--sf~~~a~s~~ek~~W~~~i~~   43 (305)
                      +.+|+|+|.++.+  .|++.|++ +|+++||+.|+.
T Consensus        63 ~r~~cFel~~~~~~~~y~~~a~~-~er~~Wi~~l~~   97 (98)
T cd01245          63 GRPNCFQIVERALPTVYYSCRSS-EERDKWIESLQA   97 (98)
T ss_pred             CCCeEEEEecCCCCeEEEEeCCH-HHHHHHHHHHhc
Confidence            6689999999997  88888888 999999999975

RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain

Probab=97.73  E-value=6e-05  Score=57.49  Aligned_cols=34  Identities=24%  Similarity=0.439  Sum_probs=30.8

Q ss_pred             CCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAISRSFTLRARSANERLEWIDAIQT   43 (305)
Q Consensus        10 ~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~   43 (305)
                      ...+.|.|.++.|+|.|.|+|++|+++||.+|.+
T Consensus        73 ~~~~~f~i~t~~r~y~l~A~s~ee~~~Wi~~I~~  106 (108)
T cd01266          73 IFGYGFDIETIVRDLYLVAKNEEEMTLWVNCICK  106 (108)
T ss_pred             ccceEEEEEeCCccEEEEECCHHHHHHHHHHHHh
Confidence            3456799999999999999999999999999975

Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str

>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain

Probab=97.65  E-value=0.00099  Score=50.13  Aligned_cols=80  Identities=18%  Similarity=0.312  Sum_probs=62.7

Q ss_pred             CceEEEEEEECCEEEEEccCc---cCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCCHHHHHHHHHHHH
Q psy2207         223 NWKRYWFVLKDQVMYKYKASE---DIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMR  299 (305)
Q Consensus       223 ~wkrrw~vL~~~~L~~y~~~~---d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~  299 (305)
                      .-..||++|=+..|++.....   .-.-.|.+||.+..|...++....++.|+|..+--....+.|.+.+|+++|+..|+
T Consensus        27 e~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v~~lEd~e~~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~hL~  106 (111)
T cd01225          27 EKRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIVTRLEDTEALKNAFEISGPLIERIVVVCNNPQDAQEWVELLN  106 (111)
T ss_pred             ccceeEEEEcCceEEEEEcCCCccceEEeeeecccccEEechHhccCccceEEEeccCcCcEEEEeCCHHHHHHHHHHHH
Confidence            346678888888887777532   23457889999999997665667789999986654568999999999999999998


Q ss_pred             HHH
Q psy2207         300 EAT  302 (305)
Q Consensus       300 ~a~  302 (305)
                      +-+
T Consensus       107 ~~~  109 (111)
T cd01225         107 ANN  109 (111)
T ss_pred             hhc
Confidence            643

Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain

Probab=97.61  E-value=8.8e-05  Score=55.45  Aligned_cols=40  Identities=25%  Similarity=0.324  Sum_probs=35.0

Q ss_pred             eecCCCcCCCceEEEEEece--EEEEEeCCHHHHHHHHHHHH
Q psy2207           3 VCLPQTEDYNNEFSVIAISR--SFTLRARSANERLEWIDAIQ   42 (305)
Q Consensus         3 v~~~~~~~~~~~f~i~~~~k--sf~~~a~s~~ek~~W~~~i~   42 (305)
                      |...++.+..++|+|.++.|  ++.|+|+|+.|+.+||++|.
T Consensus        61 ~r~~~~~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~d  102 (104)
T cd01249          61 RRKTESIDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMD  102 (104)
T ss_pred             ccccCCccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhc
Confidence            34456678889999999999  99999999999999999885

Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain

Probab=97.59  E-value=0.0001  Score=57.47  Aligned_cols=38  Identities=18%  Similarity=0.449  Sum_probs=34.1

Q ss_pred             CCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHH
Q psy2207           7 QTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTA   44 (305)
Q Consensus         7 ~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~a   44 (305)
                      +.....+.|.|.+++|+|.|.|+|+.++.+|+++|++|
T Consensus        84 ~~~~~~~~~~i~t~~R~~~l~a~s~~~~~~Wi~~i~~a  121 (121)
T cd01254          84 DITGLRHGLKITNSNRSLKLKCKSSRKLKQWMASIEDA  121 (121)
T ss_pred             ccCCCceEEEEEcCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence            33456789999999999999999999999999999875

Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=97.56  E-value=0.00021  Score=52.96  Aligned_cols=37  Identities=38%  Similarity=0.578  Sum_probs=34.8

Q ss_pred             cCCCceEEEEEece-EEEEEeCCHHHHHHHHHHHHHHH
Q psy2207           9 EDYNNEFSVIAISR-SFTLRARSANERLEWIDAIQTAI   45 (305)
Q Consensus         9 ~~~~~~f~i~~~~k-sf~~~a~s~~ek~~W~~~i~~ai   45 (305)
                      .+.+|.|.|.++.+ +|.|.|+|++|+.+|+++|+.++
T Consensus        66 ~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~  103 (104)
T PF00169_consen   66 KKRKNCFEITTPNGKSYLFSAESEEERKRWIQAIQKAI  103 (104)
T ss_dssp             SSSSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence            47899999999997 99999999999999999999886

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C

Probab=97.55  E-value=0.00015  Score=55.61  Aligned_cols=38  Identities=32%  Similarity=0.580  Sum_probs=30.0

Q ss_pred             CCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHH
Q psy2207           7 QTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTA   44 (305)
Q Consensus         7 ~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~a   44 (305)
                      ...-..+.|.|.|+.|+|.|.+++.+|+.+||++|++|
T Consensus        75 ~~~~~~~~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~~  112 (112)
T PF15413_consen   75 FGEIHLKVFSIFTPTKTFHLRCETREDRYDWIEALQEA  112 (112)
T ss_dssp             -SS-SSEEEEEE-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred             ccCcCCCCcEEECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence            34455678899999999999999999999999999975

>KOG0248|consensus

Probab=97.53  E-value=6.1e-05  Score=72.46  Aligned_cols=91  Identities=21%  Similarity=0.353  Sum_probs=71.4

Q ss_pred             CCCceeeeeeecc--CCCceEEEEEEECCEEEEEccCcc--CccceEEEec-CeEEEEccccCCcceeEEEEeCCceeEE
Q psy2207         208 SGSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASED--IKALLSIPVL-GYELEALNEQDNFKYVFQLKHQGQDPLV  282 (305)
Q Consensus       208 ~~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d--~~p~~~i~L~-~~~v~~~~~~~~~~~~F~l~~~~~~~~~  282 (305)
                      +....+||+.+.+  .+.|+|||+|++.+...||+.+.+  ..|.+.+++. ++.....    +..+.|+++ +....|+
T Consensus       247 e~~ekSgy~~~~~s~~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~s~~~~~~~----~~s~~fqli-~~t~~~~  321 (936)
T KOG0248|consen  247 ETMEKSGYWTQLTSRIKSLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIRSVTKLEQQ----GAAYAFQLI-TSTDKMN  321 (936)
T ss_pred             chhhcccchhcchHHHHHHHhHheeeccceEEEEEcCCCccccccCcccccccceeecc----chhHHhhhh-hhceeEE
Confidence            3356889998877  778999999999999999998765  5788888884 4444332    334689998 4556799


Q ss_pred             EEcCCHHHHHHHHHHHHHHHc
Q psy2207         283 FGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       283 f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      |.++++-....|+..|+.+++
T Consensus       322 ~~~~s~~lt~dw~~iL~~~iK  342 (936)
T KOG0248|consen  322 FMTESERTTHDWVTILSAAIK  342 (936)
T ss_pred             EeccChhhhhhhHHHHHHHHH
Confidence            999999999999999987764

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain

Probab=97.50  E-value=0.00024  Score=55.62  Aligned_cols=45  Identities=20%  Similarity=0.307  Sum_probs=36.5

Q ss_pred             eecCCCcCCCceEEEEEec---------------------eEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207           3 VCLPQTEDYNNEFSVIAIS---------------------RSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus         3 v~~~~~~~~~~~f~i~~~~---------------------ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      |...++...+++|+|..+.                     +.|.|+|+|++|+.+||++|+.++..
T Consensus        50 v~~~~~~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~  115 (125)
T cd01252          50 IREVEDPSKPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISP  115 (125)
T ss_pred             EEEcccCCCCeeEEEECCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            3444445677899988766                     58899999999999999999998864

Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain

Probab=97.42  E-value=0.00075  Score=49.63  Aligned_cols=80  Identities=23%  Similarity=0.398  Sum_probs=55.5

Q ss_pred             CCCceEEEEEEE----CCEEEEEcc--CccCccceEEEecCeEEE---EccccCCcceeEEEEeCCceeEEEEcCCHHHH
Q psy2207         221 GRNWKRYWFVLK----DQVMYKYKA--SEDIKALLSIPVLGYELE---ALNEQDNFKYVFQLKHQGQDPLVFGADNEQSY  291 (305)
Q Consensus       221 ~~~wkrrw~vL~----~~~L~~y~~--~~d~~p~~~i~L~~~~v~---~~~~~~~~~~~F~l~~~~~~~~~f~a~s~e~~  291 (305)
                      ...|++.-.+|+    |..|.+|-.  ++...|...|+...+.-+   ..-+-.++.++|.|...+...|+|.|.|++++
T Consensus        18 ~~~WqkcRl~L~~~~gg~~le~~~~~pPKssrpk~~v~C~~I~EvR~tt~LEmPD~~nTFvLK~~~~~eyI~Ea~d~~q~   97 (107)
T cd01231          18 GARWQRGRLVLRKAVGGYMLEFYLPLPPKSSKPKLQVACSSISEVRECTRLEMPDNLYTFVLKVDDNTDIIFEVGDEQQL   97 (107)
T ss_pred             ccccceeeEEEEecCCCceEEEEccCCCCCCCCccccchhhhhhhhhcccccccCcccEEEEEecCCceEEEEcCCHHHH
Confidence            456888777774    344555554  777788777765332111   11122346689999988888899999999999


Q ss_pred             HHHHHHHHH
Q psy2207         292 ERWMKAMRE  300 (305)
Q Consensus       292 ~~Wi~al~~  300 (305)
                      +.|+..|+.
T Consensus        98 ~SWla~Ir~  106 (107)
T cd01231          98 NSWLAELRY  106 (107)
T ss_pred             HHHHHHHhc
Confidence            999999974

LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.

>KOG1811|consensus

Probab=97.39  E-value=1.3e-05  Score=76.29  Aligned_cols=66  Identities=26%  Similarity=0.566  Sum_probs=51.7

Q ss_pred             CeeeecC----CCcccc-cccccccccccccccccccceeccCccCCeecccC-CCCccccccHhhHHHHHh
Q psy2207          76 PLWIPDS----RVSMCQ-RCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY-KKFRNFRVCEECYHYLVQ  141 (305)
Q Consensus        76 p~w~~d~----~~~~C~-~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~-~~~~~~rvC~~C~~~~~~  141 (305)
                      -.|.||.    .-..|| .|...|..++|+||||.||...|..|...+-.... ..+.+.++|+.|+..-..
T Consensus       314 ~nfq~darrafs~a~~~a~~R~~~kd~~Rk~~~~g~Ga~e~aa~ea~kgiqEd~gse~~Adg~Dq~psvsia  385 (1141)
T KOG1811|consen  314 HNFQPDARRAFSEAICMACCREHFKDFNRKHHCRGCGALECAACEAKKGIQEDCGSENPADGCDQCPSVSIA  385 (1141)
T ss_pred             hhcChhhhhhhhhhHHHHHHHHHHHHHHHhhhccccchHHHhHHHHhhhhhhcccccCcccccccccchhhH
Confidence            3578876    445677 46678999999999999999999999987655443 347899999999966553

>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain

Probab=97.28  E-value=0.0079  Score=44.76  Aligned_cols=88  Identities=16%  Similarity=0.169  Sum_probs=56.1

Q ss_pred             ceeeeeeeccCCCceEEEEEEECCEEEEEccCcc-CccceEEEecCeEEEEccccCCcceeEEEEeCC--ceeEEEEcCC
Q psy2207         211 QHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASED-IKALLSIPVLGYELEALNEQDNFKYVFQLKHQG--QDPLVFGADN  287 (305)
Q Consensus       211 ~~~G~L~~~~~~~wkrrw~vL~~~~L~~y~~~~d-~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~--~~~~~f~a~s  287 (305)
                      ++.|.|...+  .-+.|+.-|=+..|.+-+...+ ..-...|.+.+..+....+  ..++.|.|.+..  ...|.|.|.|
T Consensus         5 lleg~l~~~~--~~~eR~vFLFe~~ll~~K~~~~~y~~K~~i~~~~l~i~e~~~--~d~~~F~v~~~~~p~~~~~l~A~s   80 (97)
T cd01222           5 LLEGRFREHG--GGKPRLLFLFQTMLLIAKPRGDKYQFKAYIPCKNLMLVEHLP--GEPLCFRVIPFDDPKGALQLTARN   80 (97)
T ss_pred             eeeceEEeec--CCCceEEEEecccEEEEEecCCeeEEEEEEEecceEEecCCC--CCCcEEEEEecCCCceEEEEEecC
Confidence            4566665433  1123444444555555454333 2334567777777765433  236899997643  2479999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy2207         288 EQSYERWMKAMREAT  302 (305)
Q Consensus       288 ~e~~~~Wi~al~~a~  302 (305)
                      .++.+.|+++|+.+.
T Consensus        81 ~e~K~~W~~~i~~~i   95 (97)
T cd01222          81 REEKRIWTQQLKRAM   95 (97)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999999875

Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain

Probab=97.26  E-value=0.00065  Score=52.43  Aligned_cols=42  Identities=19%  Similarity=0.343  Sum_probs=37.4

Q ss_pred             CCCcCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207           6 PQTEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus         6 ~~~~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      .+..+.+|.|.|.+++ +.|.|+|.+++|++.||.+|+.+.+.
T Consensus        71 ~dy~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~  113 (117)
T cd01230          71 SDYSKKPHVFRLRTADWREFLFQTSSLKELQSWIERINVVAAA  113 (117)
T ss_pred             ccccCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            4566789999999986 99999999999999999999987754

EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A

Probab=97.22  E-value=0.00023  Score=55.17  Aligned_cols=52  Identities=27%  Similarity=0.564  Sum_probs=42.2

Q ss_pred             Cccccccccccccc-ccccccccccceeccCccCCeecccCCCCccccccHhhHHHHHh
Q psy2207          84 VSMCQRCTSVFTVT-FRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQ  141 (305)
Q Consensus        84 ~~~C~~C~~~f~~~-~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~~  141 (305)
                      ...|+.|+.+|+++ ++.+.|..|+..||.+|..+      ..+...-+|..|+....-
T Consensus        54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~------~~~~~~WlC~vC~k~rel  106 (118)
T PF02318_consen   54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY------SKKEPIWLCKVCQKQREL  106 (118)
T ss_dssp             CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE------TSSSCCEEEHHHHHHHHH
T ss_pred             CcchhhhCCcccccCCCCCcCCcCCccccCccCCc------CCCCCCEEChhhHHHHHH
Confidence            46899999999965 78899999999999999987      345677899999887653

The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.

>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain

Probab=97.22  E-value=0.00035  Score=50.95  Aligned_cols=27  Identities=33%  Similarity=0.455  Sum_probs=24.3

Q ss_pred             EEeceEEEEEeCCHHHHHHHHHHHHHH
Q psy2207          18 IAISRSFTLRARSANERLEWIDAIQTA   44 (305)
Q Consensus        18 ~~~~ksf~~~a~s~~ek~~W~~~i~~a   44 (305)
                      .++.|||.|+|+|+.||.+|+++|++-
T Consensus        67 ~~~~KSf~~~asS~~Er~eW~~hI~~~   93 (96)
T cd01228          67 NKNGKSYTFLLSSDYERSEWRESIQKL   93 (96)
T ss_pred             ccCCceEEEEecCHHHHHHHHHHHHHH
Confidence            458999999999999999999999753

BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG0230|consensus

Probab=97.19  E-value=0.00021  Score=74.42  Aligned_cols=54  Identities=39%  Similarity=0.795  Sum_probs=43.7

Q ss_pred             CCcccccccccccccccccccccccceeccCccCCeecccCCCCccccccHhhHHHHHhccCCC
Q psy2207          83 RVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQEFDDE  146 (305)
Q Consensus        83 ~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~~~~~~~  146 (305)
                      ...+|.+|.   +..+|+|||+.||+++|++|...       .....|||..|+.........+
T Consensus         4 s~~~~~~~~---t~~~~~~~~~~~g~~~~~~~~~~-------~~~~i~~~~~~~~~~~~~~~~~   57 (1598)
T KOG0230|consen    4 SSNVCYDCD---TSVNRRHHCRVCGRVFCSKCQDS-------PETSIRVCNECRGQWEQGNVAP   57 (1598)
T ss_pred             cccchhccc---cccccCCCCcccCceeccccCCC-------CccceeehhhhhhhccccCCCC
Confidence            356788888   78899999999999999999933       2338999999999887654443

>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain

Probab=97.16  E-value=0.0041  Score=45.08  Aligned_cols=85  Identities=19%  Similarity=0.214  Sum_probs=57.8

Q ss_pred             ceeeeeeeccCCCceEEEEEEECCEEEEEccCccCccceEEEecC--eEEEEccccCCcceeEEEEeCCceeEEEEcCCH
Q psy2207         211 QHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLG--YELEALNEQDNFKYVFQLKHQGQDPLVFGADNE  288 (305)
Q Consensus       211 ~~~G~L~~~~~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~--~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s~  288 (305)
                      ...|.+.++.+=.+++|=++|.+.--.+|=++......|.||+..  ..|....     ...|.|. +.+++|+|. |-+
T Consensus         2 l~~g~v~Kr~glf~kkR~LiLTd~PrL~yvdp~~~~~KgeIp~s~~~l~v~~~~-----~~~F~I~-Tp~rty~le-D~~   74 (89)
T cd01262           2 LKIGAVKKRKGLFAKKRQLILTNGPRLIYVDPVKKVVKGEIPWSDVELRVEVKN-----SSHFFVH-TPNKVYSFE-DPK   74 (89)
T ss_pred             ceeeeeeehhccccceeeEEEecCceEEEEcCCcCeEEeEecccccceEEEEec-----CccEEEE-CCCceEEEE-CCC
Confidence            456777776533568899999865434444455567789999965  3333221     1479886 555678885 556


Q ss_pred             HHHHHHHHHHHHHH
Q psy2207         289 QSYERWMKAMREAT  302 (305)
Q Consensus       289 e~~~~Wi~al~~a~  302 (305)
                      ..+..|+++|.++.
T Consensus        75 ~~a~~W~~~I~~~~   88 (89)
T cd01262          75 GRASQWKKAIEDLQ   88 (89)
T ss_pred             CCHHHHHHHHHHHh
Confidence            88999999998875

3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01241 PH_Akt Akt pleckstrin homology (PH) domain

Probab=97.15  E-value=0.00064  Score=51.24  Aligned_cols=34  Identities=44%  Similarity=0.667  Sum_probs=27.8

Q ss_pred             cCCCceEEEE------EeceEEEEEeCCHHHHHHHHHHHHHH
Q psy2207           9 EDYNNEFSVI------AISRSFTLRARSANERLEWIDAIQTA   44 (305)
Q Consensus         9 ~~~~~~f~i~------~~~ksf~~~a~s~~ek~~W~~~i~~a   44 (305)
                      ...+|.|.|.      +++|+|  +|+|++|+++||++|+.+
T Consensus        62 ~~~~~~F~i~~~~~~~~~~r~f--~a~s~ee~~eWi~ai~~v  101 (102)
T cd01241          62 RPRPNTFIIRCLQWTTVIERTF--HVESPEEREEWIHAIQTV  101 (102)
T ss_pred             CCCcceEEEEeccCCcccCEEE--EeCCHHHHHHHHHHHHhh
Confidence            3456899997      467776  589999999999999865

Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=97.14  E-value=0.0012  Score=64.09  Aligned_cols=95  Identities=19%  Similarity=0.361  Sum_probs=60.5

Q ss_pred             Cceeeeeeecc-CCCceEEEEEEECCEEEEEccCccCccc-----------------eEE--EecCeEEE-Ecccc---C
Q psy2207         210 SQHSGWLHKKS-GRNWKRYWFVLKDQVMYKYKASEDIKAL-----------------LSI--PVLGYELE-ALNEQ---D  265 (305)
Q Consensus       210 ~~~~G~L~~~~-~~~wkrrw~vL~~~~L~~y~~~~d~~p~-----------------~~i--~L~~~~v~-~~~~~---~  265 (305)
                      ..+.|++.+.+ ...|+++|+.+.+..+--+....+..|.                 ..|  ++...+-+ +.+..   .
T Consensus       373 ~~~~g~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (496)
T PTZ00283        373 TLYEGIVKKQSSDLSWKRRYLCIRGELEKGETLTVDVAPKFKSLDLVLAVSKDTLEQQCISTPFSDLEDVFPVPSKYTGS  452 (496)
T ss_pred             eeeeeEEecccCCcccceeEEEEeeecccCceeecCCCccchhhhhhhhhhhhhhhhhcccCchhhhcccccccHHhhCC
Confidence            46788888776 5569999998863211111111111111                 111  33322222 22221   3


Q ss_pred             CcceeEEEEeCCceeEEEEcCCHHHHHHHHHHHHHHHcC
Q psy2207         266 NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL  304 (305)
Q Consensus       266 ~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~~  304 (305)
                      +.+|+|.|...+++.+.|.|.++++++.||.+|+.+..+
T Consensus       453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  491 (496)
T PTZ00283        453 NAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVLGI  491 (496)
T ss_pred             CCCcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhcCC
Confidence            467999999988889999999999999999999988653

>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain

Probab=97.14  E-value=0.00082  Score=50.69  Aligned_cols=35  Identities=17%  Similarity=0.365  Sum_probs=30.9

Q ss_pred             cCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHH
Q psy2207           9 EDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQT   43 (305)
Q Consensus         9 ~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~   43 (305)
                      .+.+|.|.|.++. +.|.|+|+|++|.++|+.+|+.
T Consensus        68 ~k~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~  103 (104)
T cd01253          68 TKKKHVFRLRLPDGAEFLFQAPDEEEMSSWVRALKS  103 (104)
T ss_pred             ccCceEEEEEecCCCEEEEECCCHHHHHHHHHHHhc
Confidence            4667999997655 8999999999999999999974

Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd00821 PH Pleckstrin homology (PH) domain

Probab=97.11  E-value=0.001  Score=47.89  Aligned_cols=34  Identities=44%  Similarity=0.687  Sum_probs=31.5

Q ss_pred             CCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHH
Q psy2207          11 YNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTA   44 (305)
Q Consensus        11 ~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~a   44 (305)
                      .++.|.|.+.. +.+.|.|+|++|++.|+.+|+.+
T Consensus        62 ~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~l~~~   96 (96)
T cd00821          62 RKNCFEIRTPDGRSYLLQAESEEEREEWIEALQSA   96 (96)
T ss_pred             CCcEEEEecCCCcEEEEEeCCHHHHHHHHHHHhcC
Confidence            68999999988 99999999999999999999753

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01223 PH_Vav Vav pleckstrin homology (PH) domain

Probab=97.09  E-value=0.0069  Score=46.25  Aligned_cols=91  Identities=23%  Similarity=0.292  Sum_probs=57.8

Q ss_pred             eeeeeeecc--CCCceEEEEEEECCEEEEEccCccC------ccceEEEecCeEEEEcc--cc----CCcceeEEEEeCC
Q psy2207         212 HSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDI------KALLSIPVLGYELEALN--EQ----DNFKYVFQLKHQG  277 (305)
Q Consensus       212 ~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~------~p~~~i~L~~~~v~~~~--~~----~~~~~~F~l~~~~  277 (305)
                      .-|.|..+.  ...-+.|+.-|=+..|.+-+...+.      .-...+.|..+.|...+  +.    ....|.|.|.+..
T Consensus         6 ~DGelk~k~~~~~k~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~~   85 (116)
T cd01223           6 LDGEVRIKASEDQKTKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHKQ   85 (116)
T ss_pred             cCCceEEeEeccCCCceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEecC
Confidence            445555554  2234566666656666666644332      11234555666666432  11    1356899999865


Q ss_pred             c-eeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         278 Q-DPLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       278 ~-~~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      + ..|.|+|.|+++...||++|..|.
T Consensus        86 ~~~~~~f~~Ktee~K~kWm~al~~a~  111 (116)
T cd01223          86 GKTGFTFYFKTEHLRKKWLKALEMAM  111 (116)
T ss_pred             CCccEEEEeCCHHHHHHHHHHHHHHH
Confidence            3 569999999999999999999885

Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1117|consensus

Probab=97.08  E-value=0.00022  Score=70.37  Aligned_cols=89  Identities=20%  Similarity=0.306  Sum_probs=74.5

Q ss_pred             CCceeeeeeecc---CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEc
Q psy2207         209 GSQHSGWLHKKS---GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGA  285 (305)
Q Consensus       209 ~~~~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a  285 (305)
                      +++++|||.|..   ...++++|.-+.+..+.||.++++..+.+.|++.....+..    .+...|+++ ++.++|.|++
T Consensus        86 p~~~~gwldk~~pqg~~~~qkr~vkf~~~s~~yf~~~k~py~k~~i~va~is~v~~----~gd~kfevi-tn~r~fvfr~  160 (1186)
T KOG1117|consen   86 PVIKSGWLDKLSPQGEYPFQKRWVKFDGSSLEYFLSPKDPYSKGPIPVAAISAVRN----FGDNKFEVI-TNQRTFVFRQ  160 (1186)
T ss_pred             chhhcchhhccCcCcccccCccceecCCCCccccCCCCCCCCCCceeeehhhhhhh----ccCceEEEE-ecceEEEEec
Confidence            368999999987   45689999999999999999999999999999976655433    223579998 5677899999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q psy2207         286 DNEQSYERWMKAMREAT  302 (305)
Q Consensus       286 ~s~e~~~~Wi~al~~a~  302 (305)
                      +++.+...|+..++.+.
T Consensus       161 e~~~~r~~w~s~l~s~~  177 (1186)
T KOG1117|consen  161 ESEGERFIWVSPLQSAL  177 (1186)
T ss_pred             CCcccceeeechhhhcc
Confidence            99999999999998764

>smart00233 PH Pleckstrin homology domain

Probab=97.07  E-value=0.0016  Score=47.28  Aligned_cols=36  Identities=39%  Similarity=0.654  Sum_probs=33.4

Q ss_pred             CCCceEEEEEece-EEEEEeCCHHHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAISR-SFTLRARSANERLEWIDAIQTAI   45 (305)
Q Consensus        10 ~~~~~f~i~~~~k-sf~~~a~s~~ek~~W~~~i~~ai   45 (305)
                      ...+.|.|..+.+ .+.|.|+|++|+.+|+++|+.++
T Consensus        65 ~~~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~~~  101 (102)
T smart00233       65 KKPHCFEIKTADRRSYLLQAESEEEREEWVDALRKAI  101 (102)
T ss_pred             CCceEEEEEecCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence            4689999999999 99999999999999999999875

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>PF15408 PH_7: Pleckstrin homology domain

Probab=96.96  E-value=0.00033  Score=49.69  Aligned_cols=87  Identities=13%  Similarity=0.246  Sum_probs=59.3

Q ss_pred             eeeeeeccCCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEE-------cccc-CCcceeEEEEeCCceeEEEE
Q psy2207         213 SGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEA-------LNEQ-DNFKYVFQLKHQGQDPLVFG  284 (305)
Q Consensus       213 ~G~L~~~~~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~-------~~~~-~~~~~~F~l~~~~~~~~~f~  284 (305)
                      .||||......-++|+.+|++..+.+|..... ..+.++.|....+..       ...+ .-..|+|-.+...++...+-
T Consensus         1 EGYLY~~E~~si~rRF~~L~~K~~~~~~~KGG-~~L~sF~L~~s~~s~Pm~~~~~A~~N~Gi~A~G~L~~~~~~~~~~~F   79 (104)
T PF15408_consen    1 EGYLYRDEDSSIQRRFVMLRSKQFNMYEDKGG-QYLCSFQLSSSVVSHPMVNFSQAVPNLGINAFGFLMYSPSRRHVQCF   79 (104)
T ss_pred             CCeEEEeccchHHHHHHhhhhceeEEecccCC-ceeeeeehhhhhhhcccccccccCCCCCeeEEEEEEecCCcchhhhh
Confidence            48999877667788999999999999886543 334444443222221       1111 12235677776777778888


Q ss_pred             cCCHHHHHHHHHHHHH
Q psy2207         285 ADNEQSYERWMKAMRE  300 (305)
Q Consensus       285 a~s~e~~~~Wi~al~~  300 (305)
                      |++.+.++.|++++.+
T Consensus        80 A~S~~~~~~Wi~~mN~   95 (104)
T PF15408_consen   80 ASSKKVCQSWIQVMNS   95 (104)
T ss_pred             hhHHHHHHHHHHHhcC
Confidence            9999999999999963

>KOG1739|consensus

Probab=96.93  E-value=0.0013  Score=61.17  Aligned_cols=90  Identities=18%  Similarity=0.270  Sum_probs=68.1

Q ss_pred             CCCceeeeeeecc--CCCceEEEEEEECCEEEEEccCc--cCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEE
Q psy2207         208 SGSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASE--DIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVF  283 (305)
Q Consensus       208 ~~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~--d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f  283 (305)
                      +....+|+|-+-.  -..|+-||++|+.+.|.||+++.  +....|.|.|....+..-+.+   ...|-|... ...+++
T Consensus        22 gw~e~~G~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~~hGcRgsi~l~ka~i~ahEfD---e~rfdIsvn-~nv~~l   97 (611)
T KOG1739|consen   22 GWVERCGVLSKWTNYIHGWQDRYVVLKNGALSYYKSEDETEHGCRGSICLSKAVITAHEFD---ECRFDISVN-DNVWYL   97 (611)
T ss_pred             CchhhcceeeeeecccccccceEEEEcccchhhhhhhhhhhcccceeeEeccCCcccccch---hheeeeEec-cceeee
Confidence            3345777776654  56799999999999999999854  467789999976655543322   246888754 556899


Q ss_pred             EcCCHHHHHHHHHHHHHH
Q psy2207         284 GADNEQSYERWMKAMREA  301 (305)
Q Consensus       284 ~a~s~e~~~~Wi~al~~a  301 (305)
                      .+.+.+..+.|+++|...
T Consensus        98 ra~~~~hr~~w~d~L~wm  115 (611)
T KOG1739|consen   98 RAQDPDHRQQWIDALEWM  115 (611)
T ss_pred             hhcCcHHHHHHHHHHHHH
Confidence            999999999999999743

>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain

Probab=96.89  E-value=0.0027  Score=47.96  Aligned_cols=34  Identities=18%  Similarity=0.382  Sum_probs=30.5

Q ss_pred             CCCceEEEEEec--eEEEEEeCCHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAIS--RSFTLRARSANERLEWIDAIQT   43 (305)
Q Consensus        10 ~~~~~f~i~~~~--ksf~~~a~s~~ek~~W~~~i~~   43 (305)
                      ...|+|.|....  +.|.|+|.|++||..|+++|..
T Consensus        70 ~~knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a~~~  105 (109)
T cd01224          70 TIKNSLKIYSESTDEWYLFSFKSAERKHRWLSAFAL  105 (109)
T ss_pred             eeEEEEEEEEcCCCeEEEEEECCHHHHHHHHHHHHH
Confidence            458999999976  7899999999999999999864

Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A

Probab=96.87  E-value=0.0025  Score=49.48  Aligned_cols=40  Identities=28%  Similarity=0.417  Sum_probs=32.7

Q ss_pred             cCCCcCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHH
Q psy2207           5 LPQTEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTA   44 (305)
Q Consensus         5 ~~~~~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~a   44 (305)
                      ..+..+.+|.|.|.+++ ..|-|+|.+++|+.+||+.|+-+
T Consensus        77 a~dY~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~  117 (119)
T PF15410_consen   77 ASDYTKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYA  117 (119)
T ss_dssp             ETTBTTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH
T ss_pred             CcccccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhh
Confidence            35667889999999975 79999999999999999999864

>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain

Probab=96.87  E-value=0.0015  Score=50.71  Aligned_cols=33  Identities=24%  Similarity=0.394  Sum_probs=30.3

Q ss_pred             CCCceEEEE------EeceEEEEEeCCHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVI------AISRSFTLRARSANERLEWIDAIQ   42 (305)
Q Consensus        10 ~~~~~f~i~------~~~ksf~~~a~s~~ek~~W~~~i~   42 (305)
                      ..+|.|.|.      +..+.+.|+|+|++||..||++|.
T Consensus        81 ~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~  119 (125)
T cd01221          81 GRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA  119 (125)
T ss_pred             CCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence            578999995      899999999999999999999884

Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01223 PH_Vav Vav pleckstrin homology (PH) domain

Probab=96.86  E-value=0.0022  Score=48.93  Aligned_cols=38  Identities=18%  Similarity=0.435  Sum_probs=34.7

Q ss_pred             CCCceEEEEEec--eEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAIS--RSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus        10 ~~~~~f~i~~~~--ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      +..|+|.|...+  -.|.|+|.|++||+.||++|..|+++
T Consensus        74 ~~~~~f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~sn  113 (116)
T cd01223          74 RWKYGFYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMSN  113 (116)
T ss_pred             ceEEEEEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHhc
Confidence            588999999977  58999999999999999999999875

Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF15406 PH_6: Pleckstrin homology domain

Probab=96.83  E-value=0.0039  Score=46.59  Aligned_cols=68  Identities=13%  Similarity=0.293  Sum_probs=44.7

Q ss_pred             EEEEECCEEEEEc-cCccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCCHHHHHHHHHHHHH
Q psy2207         228 WFVLKDQVMYKYK-ASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMRE  300 (305)
Q Consensus       228 w~vL~~~~L~~y~-~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~  300 (305)
                      |..-.|.-|.+|. .+....|.|.|+|....-...  +...+|.|.+  .+ ..+.|.|.+..+++.|+.+|+.
T Consensus        43 wAsqTGKGLLF~~K~~dka~P~GiinLadase~~~--~g~~kF~f~~--~G-~khtF~A~s~aERD~Wv~~lk~  111 (112)
T PF15406_consen   43 WASQTGKGLLFFSKAEDKASPSGIINLADASEPEK--DGSNKFHFKI--KG-HKHTFEAASAAERDNWVAQLKA  111 (112)
T ss_pred             hhhccCceEEEEeccccccCCcceEehhhcccccc--CCCceEEEEe--CC-ceeeeecCCHHHhccHHHHhhc
Confidence            4444565555555 444468999999965433222  1233455555  44 4599999999999999999963

>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain

Probab=96.75  E-value=0.0018  Score=50.35  Aligned_cols=36  Identities=25%  Similarity=0.396  Sum_probs=28.4

Q ss_pred             cCCCceEEEEE-------------------eceEEE-EEeCCHHHHHHHHHHHHHH
Q psy2207           9 EDYNNEFSVIA-------------------ISRSFT-LRARSANERLEWIDAIQTA   44 (305)
Q Consensus         9 ~~~~~~f~i~~-------------------~~ksf~-~~a~s~~ek~~W~~~i~~a   44 (305)
                      -..+|+|.|..                   ..|+|+ |+|+|++|+++|+++|++|
T Consensus        67 c~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~  122 (122)
T cd01263          67 CARPNTFHLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST  122 (122)
T ss_pred             cCCCCeEEEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence            35788999954                   235555 6899999999999999864

Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain

Probab=96.68  E-value=0.0088  Score=43.74  Aligned_cols=80  Identities=15%  Similarity=0.307  Sum_probs=51.0

Q ss_pred             eeeeeeecc-CCCceEEEEEEECCEEEEEccC-------ccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEE
Q psy2207         212 HSGWLHKKS-GRNWKRYWFVLKDQVMYKYKAS-------EDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVF  283 (305)
Q Consensus       212 ~~G~L~~~~-~~~wkrrw~vL~~~~L~~y~~~-------~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f  283 (305)
                      ..|+|.+.. ++.=.|..|-+.| .|.|-+-.       ........|||.+..+...        .|.+..+++++|.|
T Consensus         5 ~eg~lvel~~~~rK~R~~FLFnD-lLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~--------~~~~~~~~~KSf~~   75 (96)
T cd01228           5 KDSFLVELVEGSRKLRHLFLFTD-VLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSE--------PFRIHNKNGKSYTF   75 (96)
T ss_pred             ccceeeeehhCCCcceEEEeecc-EEEEEEeeeccCccccccceeEEEEhHHheecch--------hhhccccCCceEEE
Confidence            456776655 2232344444444 34333321       2233456788887666433        26666777889999


Q ss_pred             EcCCHHHHHHHHHHHHH
Q psy2207         284 GADNEQSYERWMKAMRE  300 (305)
Q Consensus       284 ~a~s~e~~~~Wi~al~~  300 (305)
                      .|.|..|..+|+++|.+
T Consensus        76 ~asS~~Er~eW~~hI~~   92 (96)
T cd01228          76 LLSSDYERSEWRESIQK   92 (96)
T ss_pred             EecCHHHHHHHHHHHHH
Confidence            99999999999999975

BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG1738|consensus

Probab=96.64  E-value=0.00031  Score=67.39  Aligned_cols=64  Identities=19%  Similarity=0.381  Sum_probs=52.4

Q ss_pred             Cceeeeeeecc-----CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEE
Q psy2207         210 SQHSGWLHKKS-----GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQL  273 (305)
Q Consensus       210 ~~~~G~L~~~~-----~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l  273 (305)
                      -...|||++++     ...|++.||||.+..||.|.++++..+.+.|.|.+++|....+-.+.+..|..
T Consensus       562 G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~~~~~e~~i~l~~~~i~~a~e~~~~~~~~~~  630 (638)
T KOG1738|consen  562 GDRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHRVRAAESVIKLPLFTISVAEEVLGKPELTGE  630 (638)
T ss_pred             chhhccchhhccchHHHHHhhhheeeecCchhhhhhhhhhhchhheeeccchhhhhHHHhccCHhhhcc
Confidence            35788999887     45799999999999999999999999999999999999876554444444443

>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain

Probab=96.57  E-value=0.0038  Score=47.93  Aligned_cols=35  Identities=20%  Similarity=0.423  Sum_probs=28.4

Q ss_pred             CceEEE--EEec---eEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207          12 NNEFSV--IAIS---RSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus        12 ~~~f~i--~~~~---ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      +..|.|  .++.   .+|.|+|.|.++|++|+..|.+.++
T Consensus        74 ~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~  113 (114)
T cd01232          74 PCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ  113 (114)
T ss_pred             CceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence            445666  4454   7999999999999999999998764

Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd00900 PH-like Pleckstrin homology-like domain

Probab=96.53  E-value=0.0052  Score=44.42  Aligned_cols=35  Identities=37%  Similarity=0.658  Sum_probs=31.9

Q ss_pred             CCCceEEEEEe---ceEEEEEeCCHHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAI---SRSFTLRARSANERLEWIDAIQTA   44 (305)
Q Consensus        10 ~~~~~f~i~~~---~ksf~~~a~s~~ek~~W~~~i~~a   44 (305)
                      ..++.|.|...   .+.+.|.|+|++|++.|+++|+++
T Consensus        62 ~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~al~~~   99 (99)
T cd00900          62 DDPNCFAIVTKDRGRRVFVFQADSEEEAQEWVEALQQA   99 (99)
T ss_pred             CCCceEEEECCCCCcEEEEEEcCCHHHHHHHHHHHhcC
Confidence            46799999998   799999999999999999999863

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis

Probab=96.45  E-value=0.078  Score=41.30  Aligned_cols=87  Identities=16%  Similarity=0.210  Sum_probs=56.8

Q ss_pred             eeeeeecc-C------CCceEEEEEEEC--CEEEEEccCcc-C----ccceEEEecCeEEEEcccc-C------CcceeE
Q psy2207         213 SGWLHKKS-G------RNWKRYWFVLKD--QVMYKYKASED-I----KALLSIPVLGYELEALNEQ-D------NFKYVF  271 (305)
Q Consensus       213 ~G~L~~~~-~------~~wkrrw~vL~~--~~L~~y~~~~d-~----~p~~~i~L~~~~v~~~~~~-~------~~~~~F  271 (305)
                      ..||+|-. .      +...+|||-|..  ..|++...... .    .-...+.|.....+.+... .      ...++|
T Consensus        12 G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si   91 (123)
T PF12814_consen   12 GEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSI   91 (123)
T ss_pred             ccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEE
Confidence            34777755 2      378899999975  67777764321 1    1224466655444432211 1      134677


Q ss_pred             EEEeCCceeEEEEcCCHHHHHHHHHHHHH
Q psy2207         272 QLKHQGQDPLVFGADNEQSYERWMKAMRE  300 (305)
Q Consensus       272 ~l~~~~~~~~~f~a~s~e~~~~Wi~al~~  300 (305)
                      .|. +..+.+.|.|+|.++.+-|+.+|+-
T Consensus        92 ~i~-t~~R~L~l~a~s~~~~~~W~~aL~~  119 (123)
T PF12814_consen   92 IIV-TPDRSLDLTAPSRERHEIWFNALRY  119 (123)
T ss_pred             EEE-cCCeEEEEEeCCHHHHHHHHHHHHH
Confidence            776 5667899999999999999999974

During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex

>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain

Probab=96.41  E-value=0.029  Score=43.63  Aligned_cols=34  Identities=29%  Similarity=0.521  Sum_probs=28.0

Q ss_pred             CcceeEEEEe-----CCceeEEEEcCCHHHHHHHHHHHH
Q psy2207         266 NFKYVFQLKH-----QGQDPLVFGADNEQSYERWMKAMR  299 (305)
Q Consensus       266 ~~~~~F~l~~-----~~~~~~~f~a~s~e~~~~Wi~al~  299 (305)
                      ..++.|.|..     .....+.|.|+|+.++.+||+||.
T Consensus        81 ~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~  119 (125)
T cd01221          81 GRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA  119 (125)
T ss_pred             CCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence            3578999963     344679999999999999999984

Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG4236|consensus

Probab=96.40  E-value=0.0025  Score=60.64  Aligned_cols=94  Identities=16%  Similarity=0.286  Sum_probs=62.8

Q ss_pred             CCCceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEE-EEcc-----ccCCcceeEEEEeCCce
Q psy2207         208 SGSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYEL-EALN-----EQDNFKYVFQLKHQGQD  279 (305)
Q Consensus       208 ~~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v-~~~~-----~~~~~~~~F~l~~~~~~  279 (305)
                      ......||+-.-.  ...-+|.|.-|....+..|.++....--..|||..+.- ....     .....+|+|+|.+.. .
T Consensus       411 st~~kEGWmvHyt~~d~lRkrHYWrldsk~itlfqn~s~~ryYkeIPLsEIl~v~~~~~~~~vp~~~~phcFEI~T~~-~  489 (888)
T KOG4236|consen  411 STKLKEGWMVHYTSKDNLRKRHYWRLDSKCITLFQNESTNRYYKEIPLSEILSVSSNNGFSLVPAGTNPHCFEIRTAT-T  489 (888)
T ss_pred             hhhhhcceEEEEechhhhhhhhhheeccceeEeeecCCCceeEEeecHHHhheeeccCCcccCCCCCCCceEEEEeee-E
Confidence            3356788875433  11224445567788899999888777778899865433 3222     224567999998655 3


Q ss_pred             eEEEEcCC------------HHHHHHHHHHHHHHHc
Q psy2207         280 PLVFGADN------------EQSYERWMKAMREATT  303 (305)
Q Consensus       280 ~~~f~a~s------------~e~~~~Wi~al~~a~~  303 (305)
                       .+|-.++            .+.++.|-.||+.|.+
T Consensus       490 -vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~alM  524 (888)
T KOG4236|consen  490 -VYFVGENPSSTPGGESGVGLDAAQGWETAIQQALM  524 (888)
T ss_pred             -EEEecCCCCCCccccccccchhhccCchhhhhccc
Confidence             4555566            6779999999998764

>PF15404 PH_4: Pleckstrin homology domain

Probab=96.38  E-value=0.045  Score=45.59  Aligned_cols=47  Identities=23%  Similarity=0.431  Sum_probs=35.4

Q ss_pred             eeeeeeecc--CCCceEEEEEEECCEEEEEccCcc-----------CccceEEEecCeEE
Q psy2207         212 HSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASED-----------IKALLSIPVLGYEL  258 (305)
Q Consensus       212 ~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d-----------~~p~~~i~L~~~~v  258 (305)
                      ++|+|+.+.  ...|+++++||.++.|..|+.-..           ..-..+|+|.+|-|
T Consensus         1 ~sG~LY~K~~khs~F~~~~vvL~~G~Li~f~~~~Rs~tG~~~~~~~~~~~~tI~L~dcYv   60 (185)
T PF15404_consen    1 MSGYLYQKPRKHSTFKKYFVVLIPGFLILFQLFKRSRTGFAKPTVHYEHYLTIPLRDCYV   60 (185)
T ss_pred             CCceeeecCCCCCCceEEEEEEeCCEEEEEEEEeeccCCcccceEEeEeeeeeccCCceE
Confidence            479999887  678999999999999999986221           11235688877655

>KOG1451|consensus

Probab=96.30  E-value=0.011  Score=56.48  Aligned_cols=92  Identities=16%  Similarity=0.370  Sum_probs=63.4

Q ss_pred             CCCCceeeeeeecc----CCCceEEEEEEEC--CE--EEEEccC--ccCccceEEEecCeEEEEccccCCcceeEEEEeC
Q psy2207         207 DSGSQHSGWLHKKS----GRNWKRYWFVLKD--QV--MYKYKAS--EDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQ  276 (305)
Q Consensus       207 ~~~~~~~G~L~~~~----~~~wkrrw~vL~~--~~--L~~y~~~--~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~  276 (305)
                      +.++++.||||.+.    ++.|-++||+...  ..  +.-+...  .+..+..++.|..|.-...+ ..++.|+|-|...
T Consensus       262 p~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~RRktd-SIdKRFCFDve~~  340 (812)
T KOG1451|consen  262 PTPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSRRKTD-SIDKRFCFDVEVE  340 (812)
T ss_pred             CCCcccceeeeehhhhhccchhhhheeEeecccceEEEeecccCCCCcCCCcceEEehhhccCccc-ccccceeeeeeec
Confidence            44578999999987    7899999999853  22  2222221  12345566777766554443 3456799999753


Q ss_pred             C-ceeEEEEcCCHHHHHHHHHHHH
Q psy2207         277 G-QDPLVFGADNEQSYERWMKAMR  299 (305)
Q Consensus       277 ~-~~~~~f~a~s~e~~~~Wi~al~  299 (305)
                      . ..+..++|-+++++..||+|+.
T Consensus       341 erpgviTmQALSE~drrlWmeAMD  364 (812)
T KOG1451|consen  341 ERPGVITMQALSEKDRRLWMEAMD  364 (812)
T ss_pred             ccCCeeehHhhhhhHHHHHHHHhc
Confidence            2 2368999999999999999985

>KOG0930|consensus

Probab=96.29  E-value=0.0076  Score=52.57  Aligned_cols=45  Identities=24%  Similarity=0.391  Sum_probs=38.6

Q ss_pred             eecCCCcCCCceEEEEEece----------------------EEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207           3 VCLPQTEDYNNEFSVIAISR----------------------SFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus         3 v~~~~~~~~~~~f~i~~~~k----------------------sf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      |...+++..||+|+|..|+-                      .|.++|.++|||++||+.|+.+|..
T Consensus       311 ir~VedP~kP~cfEly~ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~  377 (395)
T KOG0930|consen  311 IREVEDPKKPNCFELYIPSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISR  377 (395)
T ss_pred             eeeccCCCCCCeEEEecCCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhcc
Confidence            56778889999999887543                      6788999999999999999999874

>KOG3723|consensus

Probab=96.20  E-value=0.0021  Score=61.11  Aligned_cols=92  Identities=17%  Similarity=0.289  Sum_probs=64.3

Q ss_pred             Cceeeeeeecc-----CCCceEEEEEEECCEEEEEccCc-cCccceEEEecCeEEEE--c--cccCCcceeEEEEeCCce
Q psy2207         210 SQHSGWLHKKS-----GRNWKRYWFVLKDQVMYKYKASE-DIKALLSIPVLGYELEA--L--NEQDNFKYVFQLKHQGQD  279 (305)
Q Consensus       210 ~~~~G~L~~~~-----~~~wkrrw~vL~~~~L~~y~~~~-d~~p~~~i~L~~~~v~~--~--~~~~~~~~~F~l~~~~~~  279 (305)
                      +++.|-|..++     .+.|+-+||.|.+..|.|-+... +..-...|+|..++.+.  .  .....-+-.|+|.+.. .
T Consensus       735 p~iEGQLKEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS~~~~IDl~~IRSVk~v~~kr~~rslpKAFEIFTAD-~  813 (851)
T KOG3723|consen  735 PLIEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDSDDCPIDLSKIRSVKAVAKKRRDRSLPKAFEIFTAD-K  813 (851)
T ss_pred             chhcchhhhhccchhhhhhhccceEEecchhhhcccCCCCCCCCCCCccHHHhhhHHHHHhhhhhcccchhhheeecC-c
Confidence            47889887665     57899999999999998866432 22222567775443321  1  1122334689998555 5


Q ss_pred             eEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         280 PLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       280 ~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      +|++.|.++..+++|++.|.-|.
T Consensus       814 T~ILKaKDeKNAEEWlqCL~Iav  836 (851)
T KOG3723|consen  814 TYILKAKDEKNAEEWLQCLNIAV  836 (851)
T ss_pred             eEEeecccccCHHHHHHHHHHHH
Confidence            69999999999999999997554

>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain

Probab=96.14  E-value=0.014  Score=43.81  Aligned_cols=36  Identities=14%  Similarity=0.254  Sum_probs=31.9

Q ss_pred             CCCceEEEEEec----eEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAIS----RSFTLRARSANERLEWIDAIQTAI   45 (305)
Q Consensus        10 ~~~~~f~i~~~~----ksf~~~a~s~~ek~~W~~~i~~ai   45 (305)
                      ...+.|.|.+|.    |.|.|.++|++++..||+++.-|.
T Consensus        64 ~~kf~I~l~~ps~~~~r~y~l~cdsEeqya~Wmaa~rlas  103 (106)
T cd01237          64 QQKFHIKLLIPTAEGMNEVWLRCDNEKQYAKWMAACRLAS  103 (106)
T ss_pred             ccceEEEEecCCccCCeEEEEECCCHHHHHHHHHHHHHhh
Confidence            456889999888    999999999999999999997654

Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1841|consensus

Probab=95.82  E-value=0.0037  Score=63.71  Aligned_cols=57  Identities=30%  Similarity=0.459  Sum_probs=49.5

Q ss_pred             CCCCeeeecCCCcccccccccccccccccccccccceeccCccCCeecccCCCCccccccHhhHHHHHh
Q psy2207          73 KVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQ  141 (305)
Q Consensus        73 ~~~p~w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~~  141 (305)
                      +.+++|++|..++.|+.|.++|..+.++||||  |.++          +-+.+.+..|+|..|......
T Consensus       646 e~ksVw~aDg~aPng~la~t~~~~~~e~~hsr--~~ls----------~~~~s~~~~~~~n~t~s~~rn  702 (1287)
T KOG1841|consen  646 EVKSVWFADGIAPNGELAETRFTFTGERHHSR--GKLS----------LLYSSRKEARPCNITHSVLRN  702 (1287)
T ss_pred             eecceeccCCcCCCceecccceeeeccccccc--cccc----------ccccccccCCCCcccCccchh
Confidence            67899999999999999999999999999999  6665          555677888999988877764

>KOG3727|consensus

Probab=95.53  E-value=0.0013  Score=62.35  Aligned_cols=83  Identities=31%  Similarity=0.471  Sum_probs=56.1

Q ss_pred             CCCceEEEEEEECCEEEEEccCcc--CccceEEEecCeEEEEccccC---CcceeEEEEeCCceeEEEEcCCHHHHHHHH
Q psy2207         221 GRNWKRYWFVLKDQVMYKYKASED--IKALLSIPVLGYELEALNEQD---NFKYVFQLKHQGQDPLVFGADNEQSYERWM  295 (305)
Q Consensus       221 ~~~wkrrw~vL~~~~L~~y~~~~d--~~p~~~i~L~~~~v~~~~~~~---~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi  295 (305)
                      .+..+|.||...+-.+.+|++..+  ..|...|.+.||.|.++....   ...+...+.-++...++++|+++++..+||
T Consensus       372 ~Kg~kr~f~t~~dl~~~~~~s~~~s~~ap~~~i~l~gcev~~dV~~~~~k~~i~l~~~~~~~msEi~LRCd~E~QYA~WM  451 (664)
T KOG3727|consen  372 LKGYKRYFFTFRDLHLSLYKSSEDSRGAPAISINLKGCEVTPDVNLSQQKYAIKLLVPTAEGMSEIWLRCDNEQQYARWM  451 (664)
T ss_pred             hhhhhhHHHHHHHHHHHHHhhHhhhcCCCCCchhhcCcccCCccccccccceEEEEeecCCccceeEEecCCHHHHHHHH
Confidence            445566666555444444443222  678889999999988654332   223444444466677999999999999999


Q ss_pred             HHHHHHHc
Q psy2207         296 KAMREATT  303 (305)
Q Consensus       296 ~al~~a~~  303 (305)
                      +|-+.|++
T Consensus       452 AaCrLASK  459 (664)
T KOG3727|consen  452 AACRLASK  459 (664)
T ss_pred             HHhhHhhc
Confidence            99998875

>KOG0703|consensus

Probab=95.49  E-value=0.0062  Score=53.71  Aligned_cols=38  Identities=18%  Similarity=0.357  Sum_probs=32.7

Q ss_pred             CCcccccccccccccccccccccccceeccCccCCeecccCC
Q psy2207          83 RVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYK  124 (305)
Q Consensus        83 ~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~  124 (305)
                      ++..|++|+.+    ..++.--+.|..||.+|++.|+.|+..
T Consensus        24 ~N~~CADC~a~----~P~WaSwnlGvFiC~~C~giHR~lg~h   61 (287)
T KOG0703|consen   24 DNKVCADCGAK----GPRWASWNLGVFICLRCAGIHRSLGVH   61 (287)
T ss_pred             ccCcccccCCC----CCCeEEeecCeEEEeecccccccccch
Confidence            37899999995    566777899999999999999999853

>KOG3549|consensus

Probab=95.46  E-value=0.044  Score=49.37  Aligned_cols=92  Identities=17%  Similarity=0.336  Sum_probs=67.4

Q ss_pred             CCCceeeeeeecc-----CCCceEEEEEEECCEEEEEccCccCccceEEEecCe-----------EEE-EccccCCccee
Q psy2207         208 SGSQHSGWLHKKS-----GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGY-----------ELE-ALNEQDNFKYV  270 (305)
Q Consensus       208 ~~~~~~G~L~~~~-----~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~-----------~v~-~~~~~~~~~~~  270 (305)
                      +.+++-||...+-     ...++.++..|+|..+|.|..+.    ..+.+..-+           .|. -.+..+.++++
T Consensus       279 ~qivyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPP----v~t~dw~rAe~ty~vye~mfki~Kdsd~~D~R~~C  354 (505)
T KOG3549|consen  279 EQIVYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPP----VNTADWSRAEVTYKVYETMFKIVKDSDTVDSRQHC  354 (505)
T ss_pred             ceEEEeeeccccccCcccccccCceeEEecCcEEEEEcCCC----cchhhhhhhhhhHHHHHHHHHHhccccccccccce
Confidence            3467889997654     44568899999999999998764    222222111           111 12233678899


Q ss_pred             EEEEeCCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         271 FQLKHQGQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       271 F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      |.|...++...+|..|...++.+|-.+++.|+-
T Consensus       355 F~~qs~~ge~~yfsVEl~seLa~wE~sfq~Atf  387 (505)
T KOG3549|consen  355 FLLQSSGGEPRYFSVELRSELARWENSFQAATF  387 (505)
T ss_pred             EEEEcCCCCceEEEEehhhHHHHHHHHHhhHHh
Confidence            999988888899999999999999999988864

>KOG0230|consensus

Probab=95.23  E-value=0.0068  Score=63.64  Aligned_cols=34  Identities=41%  Similarity=1.100  Sum_probs=33.1

Q ss_pred             eecCCCcccccccccccccccccccccccceeccCc
Q psy2207          79 IPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPC  114 (305)
Q Consensus        79 ~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~C  114 (305)
                      +||+.+..|-.|.+.|...+|+|||  ||.++|..|
T Consensus        92 m~d~s~~ec~~~~~~~~t~Rr~~~~--~gqi~~ss~  125 (1598)
T KOG0230|consen   92 MPDSSSKECYDCEQKFETFRRKHHC--CGQIFCSSC  125 (1598)
T ss_pred             CCccccchhhhhccchhhhhccccc--CccccCCcc
Confidence            7899999999999999999999999  999999999

>KOG0248|consensus

Probab=95.17  E-value=0.04  Score=53.74  Aligned_cols=92  Identities=17%  Similarity=0.205  Sum_probs=64.5

Q ss_pred             ceeeeeeeccCCCceEEEEEEECCEEEEEccCccCccceEEEecCe----EEEEcccc------C----CcceeEEEEe-
Q psy2207         211 QHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGY----ELEALNEQ------D----NFKYVFQLKH-  275 (305)
Q Consensus       211 ~~~G~L~~~~~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~----~v~~~~~~------~----~~~~~F~l~~-  275 (305)
                      ..+|||.+.+...-++.|+.|.+..++||++..|..|++.+++...    .+....++      .    ...|+.-+++ 
T Consensus       359 ~~~GwlT~vk~g~skkv~~alv~~~~~~~k~~~d~rp~g~l~~~~~h~~ee~~s~~sde~~e~~~~r~l~~~~~~l~~~~  438 (936)
T KOG0248|consen  359 SISGWLTRVKCGLSKKVFAALVNQKLMFFKNSNDLVPNGFLCLQEKHNGTEEYSGSSDEQLETTKEHPQRKNNDSLCVQI  438 (936)
T ss_pred             CcCcceeeeccccceeeeeeeeeeeeEEeecccccccccccchhhhhcceeeccCCchhhhhhhcCccccccCceEEecc
Confidence            4789998887445688999999999999999999999998887322    11111110      1    1124444444 


Q ss_pred             CCceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         276 QGQDPLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       276 ~~~~~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      .++..|++...+.++...|+-.+..|+
T Consensus       439 ~~~~p~yLi~~t~e~k~~wly~l~~A~  465 (936)
T KOG0248|consen  439 ANEDPVYLILRTSEDKEKWLYYLKSAS  465 (936)
T ss_pred             CCCCCEEEEeeeccccceeeeeehhhc
Confidence            455678888889999999988877664

>PF15409 PH_8: Pleckstrin homology domain

Probab=94.93  E-value=0.049  Score=39.74  Aligned_cols=35  Identities=20%  Similarity=0.392  Sum_probs=32.1

Q ss_pred             CCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAISRSFTLRARSANERLEWIDAIQTA   44 (305)
Q Consensus        10 ~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~a   44 (305)
                      +....|.|.+-...|.|-|.|++|.+.|+.+|+.|
T Consensus        54 ~~~~~I~idsg~~i~hLKa~s~~~f~~Wv~aL~~a   88 (89)
T PF15409_consen   54 KKSRRIDIDSGDEIWHLKAKSQEDFQRWVSALQKA   88 (89)
T ss_pred             CCCCEEEEEcCCeEEEEEcCCHHHHHHHHHHHHhc
Confidence            45679999999999999999999999999999875

>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain

Probab=94.65  E-value=0.74  Score=35.30  Aligned_cols=52  Identities=19%  Similarity=0.299  Sum_probs=37.3

Q ss_pred             eEEEecCeEEEEccccCCcceeEEEEeCCc----eeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         249 LSIPVLGYELEALNEQDNFKYVFQLKHQGQ----DPLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       249 ~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~----~~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      ..|++....+....+.  .+..|+|.....    ..|.+.|.|.+..+.|+..|++..
T Consensus        57 ~~ikls~l~l~e~v~g--d~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il  112 (114)
T cd01232          57 SKLQVSKMGLTEHVEG--DPCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREIL  112 (114)
T ss_pred             cceeeeeeEeEEccCC--CCceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence            4566766666544333  345677765332    579999999999999999998764

Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain

Probab=94.62  E-value=0.086  Score=39.81  Aligned_cols=41  Identities=17%  Similarity=0.397  Sum_probs=35.2

Q ss_pred             cCCCcCCCceEEEEEec--eEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207           5 LPQTEDYNNEFSVIAIS--RSFTLRARSANERLEWIDAIQTAI   45 (305)
Q Consensus         5 ~~~~~~~~~~f~i~~~~--ksf~~~a~s~~ek~~W~~~i~~ai   45 (305)
                      ..+..+.|.-|+|....  ++..|-|+|+.||+.|+.+|-.-|
T Consensus        68 ~a~~kDiP~IF~I~~~~~~~~lllLA~s~~ek~kWV~~L~~~~  110 (112)
T cd01242          68 RADAKEIPKIFQILYANEARDLLLLAPQTDEQNKWVSRLVKKI  110 (112)
T ss_pred             ecCcccCCeEEEEEeCCccceEEEEeCCchHHHHHHHHHHHhc
Confidence            34566789999999966  899999999999999999997655

Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain

Probab=94.58  E-value=0.071  Score=40.27  Aligned_cols=39  Identities=15%  Similarity=0.390  Sum_probs=33.3

Q ss_pred             CCCcCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHH
Q psy2207           6 PQTEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTA   44 (305)
Q Consensus         6 ~~~~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~a   44 (305)
                      .+++..+|+|+|.++- =...+...+++|..+|++.|++-
T Consensus        69 Ed~e~~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~hL~~~  108 (111)
T cd01225          69 EDTEALKNAFEISGPLIERIVVVCNNPQDAQEWVELLNAN  108 (111)
T ss_pred             HhccCccceEEEeccCcCcEEEEeCCHHHHHHHHHHHHhh
Confidence            4567889999999976 46778999999999999999863

Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]

Probab=94.56  E-value=0.016  Score=52.45  Aligned_cols=39  Identities=21%  Similarity=0.336  Sum_probs=32.4

Q ss_pred             cCCCcccccccccccccccccccccccceeccCccCCeecccC
Q psy2207          81 DSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY  123 (305)
Q Consensus        81 d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~  123 (305)
                      +.++..|++|+.+-    ..|---+-|.++|.+|++.|+.|+.
T Consensus        17 ~~~Nk~CaDCga~~----P~W~S~nlGvfiCi~CagvHRsLGv   55 (319)
T COG5347          17 DSSNKKCADCGAPN----PTWASVNLGVFLCIDCAGVHRSLGV   55 (319)
T ss_pred             ccccCccccCCCCC----CceEecccCeEEEeecchhhhcccc
Confidence            44577899999955    4566678899999999999999986

>KOG3551|consensus

Probab=94.53  E-value=0.12  Score=47.35  Aligned_cols=88  Identities=16%  Similarity=0.395  Sum_probs=60.3

Q ss_pred             eeeeeeecc----CCCceEEEEEEECCEEEEEccCcc-----CccceEEEecCeEEEEcccc-----CCcceeEEEEeC-
Q psy2207         212 HSGWLHKKS----GRNWKRYWFVLKDQVMYKYKASED-----IKALLSIPVLGYELEALNEQ-----DNFKYVFQLKHQ-  276 (305)
Q Consensus       212 ~~G~L~~~~----~~~wkrrw~vL~~~~L~~y~~~~d-----~~p~~~i~L~~~~v~~~~~~-----~~~~~~F~l~~~-  276 (305)
                      +-|||..+-    .+.|+..+.+|....|.+|.+-.-     ..|..+.+|....++-....     .+....|.+.+. 
T Consensus       294 HiGWLaeq~~~~G~~~w~P~l~~lTekelliYes~P~~keaws~P~~~ypLvaTRLvhsg~~~~s~~~g~~lsFa~RtGT  373 (506)
T KOG3551|consen  294 HIGWLAEQVSGGGISQWKPKLMALTEKELLIYESMPWTKEAWSRPRHTYPLVATRLVHSGSGKGSVIKGLTLSFATRTGT  373 (506)
T ss_pred             hhhhHHhhccCCChhhhhhheeeechhhhhhhhcChhhHHHhcChhhhhhhhhhhheecCCCCCCCcCCceEEEEEeccc
Confidence            456665543    457999999999988888887321     45677777755444432221     122357887753 


Q ss_pred             --CceeEEEEcCCHHHHHHHHHHHH
Q psy2207         277 --GQDPLVFGADNEQSYERWMKAMR  299 (305)
Q Consensus       277 --~~~~~~f~a~s~e~~~~Wi~al~  299 (305)
                        +-.+|.|+.||..++..|...|-
T Consensus       374 rqGV~thlfrvEThrdLa~WtRslV  398 (506)
T KOG3551|consen  374 RQGVETHLFRVETHRELAAWTRSLV  398 (506)
T ss_pred             ccceEEEEEEeccHHHHHHHHHHHH
Confidence              33589999999999999998884

>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain

Probab=94.50  E-value=0.15  Score=40.15  Aligned_cols=38  Identities=13%  Similarity=0.402  Sum_probs=31.8

Q ss_pred             CceEEEEEec--eEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy2207          12 NNEFSVIAIS--RSFTLRARSANERLEWIDAIQTAIKENE   49 (305)
Q Consensus        12 ~~~f~i~~~~--ksf~~~a~s~~ek~~W~~~i~~ai~~~~   49 (305)
                      +..|+|-+..  -.|.|+|.|++.|+.|++.|.+.+.+..
T Consensus        80 ~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~Q~  119 (133)
T cd01227          80 TKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTSQL  119 (133)
T ss_pred             ccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHHHH
Confidence            5678887744  4999999999999999999999887643

Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain

Probab=94.12  E-value=0.12  Score=39.62  Aligned_cols=38  Identities=21%  Similarity=0.340  Sum_probs=32.6

Q ss_pred             CCCcCCCceEEEEEe-------ceEEEEEeCCHHHHHHHHHHHHH
Q psy2207           6 PQTEDYNNEFSVIAI-------SRSFTLRARSANERLEWIDAIQT   43 (305)
Q Consensus         6 ~~~~~~~~~f~i~~~-------~ksf~~~a~s~~ek~~W~~~i~~   43 (305)
                      .+..+.|.-|+|.+.       ..+..|-|+|+.||+.|+.+|++
T Consensus        73 a~~kDiP~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~  117 (122)
T cd01243          73 ASKKDIPCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSE  117 (122)
T ss_pred             cCcccCCeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHH
Confidence            455678899999984       47899999999999999999876

MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain

Probab=93.68  E-value=0.69  Score=35.39  Aligned_cols=33  Identities=18%  Similarity=0.373  Sum_probs=28.3

Q ss_pred             ceeEEEEeCCc---eeEEEEcCCHHHHHHHHHHHHH
Q psy2207         268 KYVFQLKHQGQ---DPLVFGADNEQSYERWMKAMRE  300 (305)
Q Consensus       268 ~~~F~l~~~~~---~~~~f~a~s~e~~~~Wi~al~~  300 (305)
                      ..+|.|++...   ..+.|-|+|.++++.|+..|..
T Consensus        79 ~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~  114 (115)
T cd01248          79 ERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK  114 (115)
T ss_pred             ccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence            47999998664   6789999999999999999863

Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis

Probab=93.52  E-value=0.19  Score=39.09  Aligned_cols=35  Identities=23%  Similarity=0.406  Sum_probs=32.1

Q ss_pred             CCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207          11 YNNEFSVIAISRSFTLRARSANERLEWIDAIQTAI   45 (305)
Q Consensus        11 ~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai   45 (305)
                      +.++|.|.+++|+.-|.|++.++.+-|+.+|+--+
T Consensus        87 ~~~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~  121 (123)
T PF12814_consen   87 HNKSIIIVTPDRSLDLTAPSRERHEIWFNALRYLL  121 (123)
T ss_pred             cceEEEEEcCCeEEEEEeCCHHHHHHHHHHHHHHh
Confidence            67899999999999999999999999999998543

During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex

>KOG4424|consensus

Probab=93.52  E-value=0.17  Score=48.68  Aligned_cols=91  Identities=15%  Similarity=0.262  Sum_probs=59.6

Q ss_pred             Cceeeeeeecc--CCCceEEEEEEECCEEEEEccCc-----cCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEE
Q psy2207         210 SQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASE-----DIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLV  282 (305)
Q Consensus       210 ~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~-----d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~  282 (305)
                      .+.+|-|+|..  ...-..||++|=...|.|-....     ...+...+.+.+..|.... ....+++|.|. ...+...
T Consensus       272 LiKEG~l~Kis~k~~~~qeRylfLFNd~~lyc~~r~~~~~~k~~~r~~~s~~~~~v~~~~-~~~~~~tF~~~-G~~r~ve  349 (623)
T KOG4424|consen  272 LIKEGQLQKISAKNGTTQERYLFLFNDILLYCKPRKRLPGSKYEVRARCSISHMQVQEDD-NEELPHTFILT-GKKRGVE  349 (623)
T ss_pred             HhhccceeeeeccCCCcceeEEEEehhHHHhhhhhhhcccceeccceeeccCcchhcccc-cccCCceEEEe-cccceEE
Confidence            46889998887  45677888777443332222111     1122334444555554332 23457899997 4566799


Q ss_pred             EEcCCHHHHHHHHHHHHHHH
Q psy2207         283 FGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       283 f~a~s~e~~~~Wi~al~~a~  302 (305)
                      |.|.|+++.+.|+++|+.|+
T Consensus       350 l~a~t~~ek~eWv~~I~~~I  369 (623)
T KOG4424|consen  350 LQARTEQEKKEWVQAIQDAI  369 (623)
T ss_pred             eecCchhhHHHHHHHHHHHH
Confidence            99999999999999998775

>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A

Probab=93.52  E-value=0.55  Score=37.19  Aligned_cols=36  Identities=22%  Similarity=0.550  Sum_probs=25.9

Q ss_pred             CcceeEEEEeCCce--eEEEEcCCHHHHHHHHHHHHHH
Q psy2207         266 NFKYVFQLKHQGQD--PLVFGADNEQSYERWMKAMREA  301 (305)
Q Consensus       266 ~~~~~F~l~~~~~~--~~~f~a~s~e~~~~Wi~al~~a  301 (305)
                      ...|.|.+.|-+..  .|.|.|+|+.+++.|++.|.++
T Consensus        97 ~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q  134 (135)
T PF15405_consen   97 KSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ  134 (135)
T ss_dssp             SSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred             CCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence            44577888775543  4799999999999999999875

>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF

Probab=93.32  E-value=0.024  Score=43.43  Aligned_cols=36  Identities=19%  Similarity=0.295  Sum_probs=31.1

Q ss_pred             CcccccccccccccccccccccccceeccCccCCeecccC
Q psy2207          84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY  123 (305)
Q Consensus        84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~  123 (305)
                      +..|++|+.+    ...+-+.+-|..+|..|++.|+.|+.
T Consensus         3 N~~CaDC~~~----~p~w~s~~~GifvC~~CsgiHR~lg~   38 (112)
T smart00105        3 NKKCFDCGAP----NPTWASVNLGVFLCIECSGIHRSLGV   38 (112)
T ss_pred             CCcccCCCCC----CCCcEEeccceeEhHHhHHHHHhcCC
Confidence            6789999994    45677889999999999999999974

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.

>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A

Probab=93.22  E-value=0.23  Score=39.34  Aligned_cols=24  Identities=38%  Similarity=0.655  Sum_probs=20.1

Q ss_pred             ceEEEEEeCCHHHHHHHHHHHHHH
Q psy2207          21 SRSFTLRARSANERLEWIDAIQTA   44 (305)
Q Consensus        21 ~ksf~~~a~s~~ek~~W~~~i~~a   44 (305)
                      ..+|+|+|+|+.+|++|++.|+++
T Consensus       111 ~~~~TLyA~s~~~R~~W~e~I~~q  134 (135)
T PF15405_consen  111 GYSYTLYASSAQARQKWLEKIEEQ  134 (135)
T ss_dssp             -EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCHHHHHHHHHHHHhc
Confidence            457999999999999999999865

>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain

Probab=93.15  E-value=1.7  Score=34.34  Aligned_cols=79  Identities=20%  Similarity=0.332  Sum_probs=53.8

Q ss_pred             ceEEEEEEECCEEEEEccCccC----------------cc---ceEEEecCeEEEEcccc-CCcceeEEEEeC-------
Q psy2207         224 WKRYWFVLKDQVMYKYKASEDI----------------KA---LLSIPVLGYELEALNEQ-DNFKYVFQLKHQ-------  276 (305)
Q Consensus       224 wkrrw~vL~~~~L~~y~~~~d~----------------~p---~~~i~L~~~~v~~~~~~-~~~~~~F~l~~~-------  276 (305)
                      -.-.-||++..++.+|+.....                .|   ...||+....|...... ....+.++|+|.       
T Consensus        49 ~e~~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQVR~~n~ad~e~~~vwEliH~kSe~egR  128 (160)
T cd01255          49 LELMCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQVRASSAADMESNFLWELIHLKSELEGR  128 (160)
T ss_pred             ceEEEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeeeeecCCCcCcccceEEEEEeecccccCC
Confidence            3445678888888888853221                11   12466666666643322 234589999984       


Q ss_pred             CceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         277 GQDPLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       277 ~~~~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      .+++|.|++.+.|..+..+..|+...
T Consensus       129 pE~vfqLCcS~~E~k~~flK~Irsil  154 (160)
T cd01255         129 PEKVFVLCCSTAESRNAFLKTIRSIL  154 (160)
T ss_pred             CcceEEEecCCHHHHHHHHHHHHHHH
Confidence            34589999999999999999998654

TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.

>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []

Probab=93.13  E-value=0.018  Score=44.44  Aligned_cols=38  Identities=16%  Similarity=0.325  Sum_probs=27.9

Q ss_pred             CCCcccccccccccccccccccccccceeccCccCCeecccC
Q psy2207          82 SRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY  123 (305)
Q Consensus        82 ~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~  123 (305)
                      ..+..|++|+.+.+    .+-+-+-|..+|..|++.|+.|+.
T Consensus        11 ~~N~~CaDCg~~~p----~w~s~~~GiflC~~Cag~HR~lg~   48 (116)
T PF01412_consen   11 PGNKVCADCGAPNP----TWASLNYGIFLCLECAGIHRSLGV   48 (116)
T ss_dssp             TTCTB-TTT-SBS------EEETTTTEEE-HHHHHHHHHHTT
T ss_pred             cCcCcCCCCCCCCC----CEEEeecChhhhHHHHHHHHHhcc
Confidence            44679999998554    677788899999999999999974

The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....

>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain

Probab=93.08  E-value=0.19  Score=37.13  Aligned_cols=34  Identities=9%  Similarity=0.208  Sum_probs=29.0

Q ss_pred             CCCceEEEEEece-EEEEEeCCHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAISR-SFTLRARSANERLEWIDAIQT   43 (305)
Q Consensus        10 ~~~~~f~i~~~~k-sf~~~a~s~~ek~~W~~~i~~   43 (305)
                      +..|+|.|...+. .|.|.|.++++++.|+..|+.
T Consensus        72 D~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir~  106 (107)
T cd01231          72 DNLYTFVLKVDDNTDIIFEVGDEQQLNSWLAELRY  106 (107)
T ss_pred             CcccEEEEEecCCceEEEEcCCHHHHHHHHHHHhc
Confidence            3569999988554 788999999999999999975

LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.

>PF15406 PH_6: Pleckstrin homology domain

Probab=92.83  E-value=0.17  Score=37.92  Aligned_cols=33  Identities=30%  Similarity=0.474  Sum_probs=29.8

Q ss_pred             CCCceEEEEEeceEEEEEeCCHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAISRSFTLRARSANERLEWIDAIQ   42 (305)
Q Consensus        10 ~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~   42 (305)
                      +..|.|.+......-.|+|.|..||+.|+.+|.
T Consensus        78 ~g~~kF~f~~~G~khtF~A~s~aERD~Wv~~lk  110 (112)
T PF15406_consen   78 DGSNKFHFKIKGHKHTFEAASAAERDNWVAQLK  110 (112)
T ss_pred             CCCceEEEEeCCceeeeecCCHHHhccHHHHhh
Confidence            456889999999999999999999999999885

>KOG0690|consensus

Probab=92.82  E-value=0.24  Score=44.89  Aligned_cols=38  Identities=34%  Similarity=0.468  Sum_probs=28.5

Q ss_pred             CCceEEEEEeceE----EEEEeCCHHHHHHHHHHHHHHHHHH
Q psy2207          11 YNNEFSVIAISRS----FTLRARSANERLEWIDAIQTAIKEN   48 (305)
Q Consensus        11 ~~~~f~i~~~~ks----f~~~a~s~~ek~~W~~~i~~ai~~~   48 (305)
                      .||.|.|..-+=+    -.|+++|++||++|+++||......
T Consensus        78 rPntFiiRcLQWTTVIERTF~ves~~eRq~W~~AIq~vsn~l  119 (516)
T KOG0690|consen   78 RPNTFIIRCLQWTTVIERTFYVESAEERQEWIEAIQAVSNRL  119 (516)
T ss_pred             CCceEEEEeeeeeeeeeeeeecCCHHHHHHHHHHHHHHhhhh
Confidence            4789988874332    2357899999999999999765443

>KOG0932|consensus

Probab=92.76  E-value=0.19  Score=48.19  Aligned_cols=44  Identities=20%  Similarity=0.246  Sum_probs=38.1

Q ss_pred             cCCCcCCCceEEEEE-eceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy2207           5 LPQTEDYNNEFSVIA-ISRSFTLRARSANERLEWIDAIQTAIKEN   48 (305)
Q Consensus         5 ~~~~~~~~~~f~i~~-~~ksf~~~a~s~~ek~~W~~~i~~ai~~~   48 (305)
                      .+|+.+.+|.|.|.+ .-|.|-|||.|.+|+..||+.|+-+.+..
T Consensus       576 AtdY~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA~f  620 (774)
T KOG0932|consen  576 ATDYSKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVAAAF  620 (774)
T ss_pred             CcccccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHHhc
Confidence            467889999999999 55899999999999999999998765543

>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional

Probab=92.26  E-value=0.069  Score=51.24  Aligned_cols=36  Identities=22%  Similarity=0.359  Sum_probs=32.3

Q ss_pred             CcccccccccccccccccccccccceeccCccCCeecccC
Q psy2207          84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY  123 (305)
Q Consensus        84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~  123 (305)
                      +..|++|+.    ...+|-|.+.|..||-.|++.|+.|+.
T Consensus        23 Nk~CADCgs----~~P~WASiNlGIFICi~CSGIHRsLGh   58 (648)
T PLN03119         23 NRRCINCNS----LGPQYVCTTFWTFVCMACSGIHREFTH   58 (648)
T ss_pred             CCccccCCC----CCCCceeeccceEEeccchhhhccCCc
Confidence            678999998    568899999999999999999999864

>KOG1737|consensus

Probab=92.23  E-value=0.081  Score=53.28  Aligned_cols=87  Identities=14%  Similarity=0.131  Sum_probs=61.3

Q ss_pred             Cceeeeeeecc--CCCceEEEEEEECCEEEEEccCcc--CccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEc
Q psy2207         210 SQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASED--IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGA  285 (305)
Q Consensus       210 ~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d--~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a  285 (305)
                      ....|||++..  .+.|.+|||+|.++.|.||.....  ..+.+.+.+....+.....     ..+.+...+...|+..+
T Consensus        77 ~~~~g~l~k~~n~~~~~~~r~f~l~~g~ls~~~~~~~~~~~~~~~~~~~~a~i~~~~~-----~~~~~~~~~~q~~~~~~  151 (799)
T KOG1737|consen   77 ASLEGILLKWRNYSKGPSSRWFVLSGGLLSYYFDNSFSKTTCGGGINLVTAWIQNGER-----MDICSVDGSCQIYLVEL  151 (799)
T ss_pred             ccccceeeccccccCCcccceEEecCcceeeeccCCccccCCCCcccccccccccCCC-----cccchhhcccchhhhhh
Confidence            45789998877  889999999999999999987543  4566677765544432211     12333333344577888


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy2207         286 DNEQSYERWMKAMREA  301 (305)
Q Consensus       286 ~s~e~~~~Wi~al~~a  301 (305)
                      -+..+.+.|+.+++.+
T Consensus       152 ~~~~~~~~~~~~~~l~  167 (799)
T KOG1737|consen  152 SKKLQRQGWLHALELA  167 (799)
T ss_pred             hHHHhhcchhhhhhhc
Confidence            8999999999999866

>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A

Probab=92.16  E-value=0.36  Score=36.36  Aligned_cols=36  Identities=19%  Similarity=0.408  Sum_probs=28.3

Q ss_pred             CceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy2207          12 NNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKEN   48 (305)
Q Consensus        12 ~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~   48 (305)
                      ...|.|.+|.|+|.|...+ ..-..|+++|++++...
T Consensus        67 ~~~F~I~tp~RtY~l~d~~-~~A~~W~~~I~~~~~~~  102 (104)
T PF14593_consen   67 FKTFFIHTPKRTYYLEDPE-GNAQQWVEAIEEVKKQY  102 (104)
T ss_dssp             SSEEEEEETTEEEEEE-TT-S-HHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcEEEEECCC-CCHHHHHHHHHHHHHHh
Confidence            4599999999999998844 44677999999988653

>PLN03131 hypothetical protein; Provisional

Probab=90.65  E-value=0.12  Score=50.11  Aligned_cols=36  Identities=19%  Similarity=0.366  Sum_probs=32.2

Q ss_pred             CcccccccccccccccccccccccceeccCccCCeecccC
Q psy2207          84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY  123 (305)
Q Consensus        84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~  123 (305)
                      +..|++|+.    ...+|-|.+.|..||-.|++.|+.|+.
T Consensus        23 Nk~CADCga----~~P~WASiNlGIFICi~CSGIHRsLgh   58 (705)
T PLN03131         23 NRRCINCNS----LGPQFVCTNFWTFICMTCSGIHREFTH   58 (705)
T ss_pred             CCccccCCC----CCCCeeEeccceEEchhchhhhcccCc
Confidence            668999998    567899999999999999999999864

>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function

Probab=90.64  E-value=0.91  Score=34.36  Aligned_cols=38  Identities=16%  Similarity=0.326  Sum_probs=33.8

Q ss_pred             CCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus        10 ~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      +...-|.|.|.++.++|.++|..+++.|.+.|+..+..
T Consensus        68 ~~~~yfgL~T~~G~vEfec~~~~~~k~W~~gI~~mL~~  105 (110)
T PF08458_consen   68 EERRYFGLKTAQGVVEFECDSQREYKRWVQGIQHMLSQ  105 (110)
T ss_pred             ceEEEEEEEecCcEEEEEeCChhhHHHHHHHHHHHHHH
Confidence            34567999999999999999999999999999987764

>KOG2070|consensus

Probab=90.48  E-value=0.46  Score=44.96  Aligned_cols=93  Identities=16%  Similarity=0.310  Sum_probs=67.1

Q ss_pred             CCCceeeeeeecc-CCCceEEEEEEECCEEEEEccCccCc---cceEEEecCeEEEEccccCCcceeEEEEeCCceeEEE
Q psy2207         208 SGSQHSGWLHKKS-GRNWKRYWFVLKDQVMYKYKASEDIK---ALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVF  283 (305)
Q Consensus       208 ~~~~~~G~L~~~~-~~~wkrrw~vL~~~~L~~y~~~~d~~---p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f  283 (305)
                      +++++-|-..... +-.-+.||++|=.++|.++....+..   -.|.+++.|..|...++.......|+|...--....-
T Consensus       308 G~iiymg~v~Vqy~~ad~~dRy~~LF~~~llflsvs~rMs~fIyegKlp~tG~iV~klEdte~~~nafeis~~ti~rIv~  387 (661)
T KOG2070|consen  308 GNIIYMGQVLVQYAGADEKDRYLLLFPNVLLFLSVSPRMSGFIYEGKLPTTGMIVTKLEDTENHRNAFEISGSTIERIVV  387 (661)
T ss_pred             cceEeeeehhhhhcCcchhhheeeeccceeeeeEeccccchhhhccccccceeEEeehhhhhcccccccccccchhheee
Confidence            3445555544433 33456899999888888888765532   3578899999998766666667889986432233678


Q ss_pred             EcCCHHHHHHHHHHHHH
Q psy2207         284 GADNEQSYERWMKAMRE  300 (305)
Q Consensus       284 ~a~s~e~~~~Wi~al~~  300 (305)
                      .++.+.+++.|+++|..
T Consensus       388 ~c~~~~~l~~wve~ln~  404 (661)
T KOG2070|consen  388 SCNNQQDLQEWVEHLNK  404 (661)
T ss_pred             ccCChHHHHHHHHHhhh
Confidence            89999999999999985

>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain

Probab=90.15  E-value=0.44  Score=34.62  Aligned_cols=33  Identities=15%  Similarity=0.348  Sum_probs=27.0

Q ss_pred             CceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207          12 NNEFSVIAISRSFTLRARSANERLEWIDAIQTAI   45 (305)
Q Consensus        12 ~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai   45 (305)
                      .+.|.|.||.|++.|.- -...-.+|+++|+++.
T Consensus        56 ~~~F~I~Tp~rty~leD-~~~~a~~W~~~I~~~~   88 (89)
T cd01262          56 SSHFFVHTPNKVYSFED-PKGRASQWKKAIEDLQ   88 (89)
T ss_pred             CccEEEECCCceEEEEC-CCCCHHHHHHHHHHHh
Confidence            36999999999999963 3467788999998763

3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1729|consensus

Probab=90.02  E-value=0.056  Score=48.24  Aligned_cols=41  Identities=32%  Similarity=0.749  Sum_probs=37.6

Q ss_pred             CeeeecCCCcccccccccccccccccccccccceeccCccC
Q psy2207          76 PLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSD  116 (305)
Q Consensus        76 p~w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~  116 (305)
                      +.|..+.++..|..|...|.+..|+|||+.||+++|.+|..
T Consensus        12 ~~~~~~~e~~s~~~~~~e~~~~~r~~~~~~~grv~~~q~~~   52 (288)
T KOG1729|consen   12 VDWQANSEANSCRNCKVEFCFGRRGHPCRECGRVLCRQGTL   52 (288)
T ss_pred             HHHHHhccchhhhhhcccchhhhccCcccccchhhhhhhhh
Confidence            45777888889999999999999999999999999999997

>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional

Probab=88.58  E-value=0.21  Score=45.44  Aligned_cols=36  Identities=19%  Similarity=0.351  Sum_probs=30.4

Q ss_pred             CcccccccccccccccccccccccceeccCccCCeecccC
Q psy2207          84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY  123 (305)
Q Consensus        84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~  123 (305)
                      +..|++|+.+    +..|-..+-|..+|-.|++.|+.|+.
T Consensus        22 Nk~CaDCga~----nPtWASvn~GIFLCl~CSGVHRsLGv   57 (395)
T PLN03114         22 NKICFDCNAK----NPTWASVTYGIFLCIDCSAVHRSLGV   57 (395)
T ss_pred             CCcCccCCCC----CCCceeeccceeehhhhhHhhccCCC
Confidence            6689999995    45566678899999999999999975

>KOG4407|consensus

Probab=88.55  E-value=0.021  Score=59.31  Aligned_cols=93  Identities=16%  Similarity=0.188  Sum_probs=70.7

Q ss_pred             CCceeeeeeecc------------CCCceEEEEEEECCEEEEEccCccCc--------------cceEEEecCeEEEEcc
Q psy2207         209 GSQHSGWLHKKS------------GRNWKRYWFVLKDQVMYKYKASEDIK--------------ALLSIPVLGYELEALN  262 (305)
Q Consensus       209 ~~~~~G~L~~~~------------~~~wkrrw~vL~~~~L~~y~~~~d~~--------------p~~~i~L~~~~v~~~~  262 (305)
                      +..+.||||.+.            .+.|++.|.+|.+..|+.|++.....              ....+.+.++.+.+.-
T Consensus       922 d~~megWly~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscltdI~y 1001 (1973)
T KOG4407|consen  922 DSEMEGWLYVLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCLTDIQY 1001 (1973)
T ss_pred             hhhhhcceeeeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCccccccchhhhhh
Confidence            346889999765            34799999999999999999755411              2234666777776644


Q ss_pred             ccCCcceeEEEEeCCceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207         263 EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA  301 (305)
Q Consensus       263 ~~~~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a  301 (305)
                      ....+...|+|.......+.|.+++.++|-.|++.+++-
T Consensus      1002 setkrn~vfRLTt~d~ce~lfqaeDrddmlgG~~ttq~S 1040 (1973)
T KOG4407|consen 1002 SETKRNQVFRLTTNDLCEGLFQAEDRDDMLGGLSTTQSS 1040 (1973)
T ss_pred             hhhhhhhHHHhHHHHHHhHhhccCccccccchhhhhhhc
Confidence            445667899998666578999999999999999988654

>KOG4807|consensus

Probab=87.51  E-value=0.004  Score=56.55  Aligned_cols=80  Identities=21%  Similarity=0.337  Sum_probs=59.1

Q ss_pred             CCCceEEEEEEECCEEEEEccCcc---CccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCCHHHHHHHHHH
Q psy2207         221 GRNWKRYWFVLKDQVMYKYKASED---IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKA  297 (305)
Q Consensus       221 ~~~wkrrw~vL~~~~L~~y~~~~d---~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~a  297 (305)
                      ...|++.|||+.+..+-||.....   ..-.+.|+|..|+-+..-. ..+.|.|+|- +...+|.+.+-+......|+.|
T Consensus        32 t~~~~k~~~~~~~~~~~~~~d~~A~~~~~L~~~~~LR~C~~v~e~a-~q~nY~~~i~-~~~~~~tL~~~~s~Ir~~~~~A  109 (593)
T KOG4807|consen   32 TSQWKKHWFVLTDSSLKYYRDSTAEEADELDGEIDLRSCTDVTEYA-VQRNYGFQIH-TKDAVYTLSAMTSGIRRNWIEA  109 (593)
T ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHhcccCCccccHHHHHHHHHHH-HHhccceeec-ccchhhhhHHHHHHHHHHHHHH
Confidence            447999999999999999986432   2335678886665432211 2445899996 5556799999999999999999


Q ss_pred             HHHHH
Q psy2207         298 MREAT  302 (305)
Q Consensus       298 l~~a~  302 (305)
                      +.+..
T Consensus       110 ~~kT~  114 (593)
T KOG4807|consen  110 LRKTV  114 (593)
T ss_pred             HHhcc
Confidence            97643

>KOG0704|consensus

Probab=87.25  E-value=0.34  Score=43.82  Aligned_cols=39  Identities=18%  Similarity=0.298  Sum_probs=31.2

Q ss_pred             cCCCcccccccccccccccccccccccceeccCccCCeecccC
Q psy2207          81 DSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY  123 (305)
Q Consensus        81 d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~  123 (305)
                      -+++..|++|+++    +..+.-..=|..||-.||+.|+.|+-
T Consensus        16 ~deNk~CfeC~a~----NPQWvSvsyGIfICLECSG~HRgLGV   54 (386)
T KOG0704|consen   16 QDENKKCFECGAP----NPQWVSVSYGIFICLECSGKHRGLGV   54 (386)
T ss_pred             cccCCceeecCCC----CCCeEeecccEEEEEecCCcccccce
Confidence            3457789999994    44555556789999999999999975

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=85.64  E-value=0.4  Score=38.81  Aligned_cols=25  Identities=40%  Similarity=0.675  Sum_probs=17.9

Q ss_pred             cccccccccc------------cccccccccccccee
Q psy2207          86 MCQRCTSVFT------------VTFRRHHCRACGKVV  110 (305)
Q Consensus        86 ~C~~C~~~f~------------~~~rrhhCr~cg~v~  110 (305)
                      .|..|+.+++            .++|+++|.+||..|
T Consensus         2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f   38 (154)
T PRK00464          2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRF   38 (154)
T ss_pred             cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcc
Confidence            4888888772            345668999888764

>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain

Probab=85.58  E-value=9.9  Score=29.97  Aligned_cols=50  Identities=10%  Similarity=0.205  Sum_probs=33.6

Q ss_pred             EEEecCeEEEEccccCCcceeEEEEeC-CceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207         250 SIPVLGYELEALNEQDNFKYVFQLKHQ-GQDPLVFGADNEQSYERWMKAMREA  301 (305)
Q Consensus       250 ~i~L~~~~v~~~~~~~~~~~~F~l~~~-~~~~~~f~a~s~e~~~~Wi~al~~a  301 (305)
                      .|.+....+.....  +.+..|+|... ....|.+.|.|.+..+.|++.|++-
T Consensus        64 ~ikls~lglte~v~--gd~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~i  114 (133)
T cd01227          64 SLKMTAVGITENVK--GDTKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKV  114 (133)
T ss_pred             eEEeecccccccCC--CCccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence            45555444443222  23457877653 3347999999999999999999753

Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG2059|consensus

Probab=85.36  E-value=1.6  Score=43.33  Aligned_cols=40  Identities=25%  Similarity=0.492  Sum_probs=35.6

Q ss_pred             CCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENE   49 (305)
Q Consensus        10 ~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~   49 (305)
                      +.+|.|+|+.++|+..|+|..--|-++|+++|........
T Consensus       629 ~~knv~qVV~~drtly~Q~~n~vEandWldaL~kvs~~N~  668 (800)
T KOG2059|consen  629 KMKNVFQVVHTDRTLYVQAKNCVEANDWLDALRKVSCCNQ  668 (800)
T ss_pred             CCCceEEEEecCcceeEecCCchHHHHHHHHHHHHhccCc
Confidence            5689999999999999999999999999999998665433

>KOG0517|consensus

Probab=84.96  E-value=0.01  Score=63.33  Aligned_cols=92  Identities=22%  Similarity=0.347  Sum_probs=65.0

Q ss_pred             ceeeeeeecc----------CCCceEEEEEEECCEEEEEccCccCccc------eEEEe--cCeEEEEccccCCcceeEE
Q psy2207         211 QHSGWLHKKS----------GRNWKRYWFVLKDQVMYKYKASEDIKAL------LSIPV--LGYELEALNEQDNFKYVFQ  272 (305)
Q Consensus       211 ~~~G~L~~~~----------~~~wkrrw~vL~~~~L~~y~~~~d~~p~------~~i~L--~~~~v~~~~~~~~~~~~F~  272 (305)
                      .+.|+|+.+-          .+.|...|+++..+.|.+|++.+.....      +..+|  ..+.+...-+...++++|.
T Consensus      2300 ~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~el~fykD~k~~~a~ve~~~r~e~~lel~~a~i~~a~dy~kkk~v~~ 2379 (2473)
T KOG0517|consen 2300 QLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKELGFYKDAKKDLASVELLVRGEPPLELDMAAIEVASDYHKKKHVFL 2379 (2473)
T ss_pred             HHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhccchhhcccCcccccchhhccCCcchhcchhHHHHHHHHHHHhHhhh
Confidence            6889997654          5678889999999999999976532211      11122  2222222223346678999


Q ss_pred             EEeCCceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         273 LKHQGQDPLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       273 l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      |..+.+..|.|.|.++++|..|+.++..+.
T Consensus      2380 l~~~~gae~llq~k~ee~m~sWL~~~a~~~ 2409 (2473)
T KOG0517|consen 2380 LQLPPGAEHLLQAKDEEEMESWLRALAVKR 2409 (2473)
T ss_pred             hcCCchHHHHHhhccHHHHHHHHHHHHHHH
Confidence            988888889999999999999999986554

>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain

Probab=83.95  E-value=2.6  Score=31.92  Aligned_cols=35  Identities=17%  Similarity=0.303  Sum_probs=30.8

Q ss_pred             cCCCceEEEEEec--eEEEEEeCCHHHHHHHHHHHHH
Q psy2207           9 EDYNNEFSVIAIS--RSFTLRARSANERLEWIDAIQT   43 (305)
Q Consensus         9 ~~~~~~f~i~~~~--ksf~~~a~s~~ek~~W~~~i~~   43 (305)
                      +..+++|-|.+..  .+..|..++..|...|..+|++
T Consensus        71 ~~~~~~F~irtg~~vesh~fsVEt~~dL~~W~raiv~  107 (108)
T cd01258          71 DQRDNCFLIRTGTQVENHYLRVETHRDLASWERALVR  107 (108)
T ss_pred             CCCceEEEEEcCCceeeEEEEecCHHHHHHHHHHHhc
Confidence            3667899999976  5889999999999999999985

Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair

Probab=83.86  E-value=0.3  Score=31.63  Aligned_cols=31  Identities=26%  Similarity=0.655  Sum_probs=19.5

Q ss_pred             ccccccccccc------ccccccccccceeccCccCC
Q psy2207          87 CQRCTSVFTVT------FRRHHCRACGKVVCGPCSDY  117 (305)
Q Consensus        87 C~~C~~~f~~~------~rrhhCr~cg~v~C~~Cs~~  117 (305)
                      |..|..+|+..      ..+..|..|+.+||..|=.+
T Consensus         2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~f   38 (51)
T PF07975_consen    2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVF   38 (51)
T ss_dssp             ETTTTEE-TTS-------EEE--TTTT--B-HHHHHT
T ss_pred             CccCCCCCCCcccccccCCeEECCCCCCccccCcChh
Confidence            77888888865      36899999999999988654

It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.

>KOG2996|consensus

Probab=83.66  E-value=1.6  Score=42.41  Aligned_cols=90  Identities=12%  Similarity=0.314  Sum_probs=62.1

Q ss_pred             ceEEEEEe-ce-EEEEEeCCHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcccCcCCCCCeeeecCCCcccccc
Q psy2207          13 NEFSVIAI-SR-SFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSIPELNLGKVAPLWIPDSRVSMCQRC   90 (305)
Q Consensus        13 ~~f~i~~~-~k-sf~~~a~s~~ek~~W~~~i~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~d~~~~~C~~C   90 (305)
                      +.|-|+.. .| -|.|+..+++-|+.||+++.-|+.+..-..+.                .....-....-...+.|..|
T Consensus       477 ~~f~lI~tqg~ngl~fy~Kte~~kkkWmeqfema~SNi~Pdya~----------------an~H~fqmhtF~~~tsCkvC  540 (865)
T KOG2996|consen  477 YGFYLIHTQGRNGLEFYCKTEDLKKKWMEQFEMAKSNISPDYAR----------------ANNHDFQMHTFKNTTSCKVC  540 (865)
T ss_pred             eeEEEEEEcCCcceEEEEecHHHHHHHHHHHHHHHhcCCccccc----------------ccCcceEEEeccCCcchHHH
Confidence            46666553 33 78999999999999999999988774321111                01111123334567889999


Q ss_pred             ccccc-ccccccccccccceeccCccCCe
Q psy2207          91 TSVFT-VTFRRHHCRACGKVVCGPCSDYL  118 (305)
Q Consensus        91 ~~~f~-~~~rrhhCr~cg~v~C~~Cs~~~  118 (305)
                      ..-.- .+..-..|..||.-+-..|++..
T Consensus       541 ~mllrGtfYQGY~C~~c~~~ahkecl~~v  569 (865)
T KOG2996|consen  541 QMLLRGTFYQGYKCEKCGADAHKECLGRV  569 (865)
T ss_pred             HHHhhhhhhcceeeeeccccHHHHhccCC
Confidence            77442 45667899999999999999864

>KOG1264|consensus

Probab=83.51  E-value=1.8  Score=43.67  Aligned_cols=54  Identities=28%  Similarity=0.538  Sum_probs=38.3

Q ss_pred             EEEecCeEEEEccc-cCCcceeEEEEe--CCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         250 SIPVLGYELEALNE-QDNFKYVFQLKH--QGQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       250 ~i~L~~~~v~~~~~-~~~~~~~F~l~~--~~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      +.++..+.|+..+. ...+.++|.|..  .+.-.|.|+|++.|++..|+++|++++.
T Consensus       855 i~d~~~~nvv~~~q~~n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~  911 (1267)
T KOG1264|consen  855 ILDLNTYNVVKAPQGKNQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITW  911 (1267)
T ss_pred             cccccccceeecccccCCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHH
Confidence            34455555554332 234557888764  4555799999999999999999998764

>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain

Probab=82.53  E-value=3  Score=30.94  Aligned_cols=35  Identities=14%  Similarity=0.258  Sum_probs=28.9

Q ss_pred             cCCCceEEEEEe--------ceEEEEEeCCHHHHHHHHHHHHH
Q psy2207           9 EDYNNEFSVIAI--------SRSFTLRARSANERLEWIDAIQT   43 (305)
Q Consensus         9 ~~~~~~f~i~~~--------~ksf~~~a~s~~ek~~W~~~i~~   43 (305)
                      ...+|+|.|..|        .|++.|.|+|++|-+.|...+-+
T Consensus        61 ~sk~~~FeLfnpd~rnvykd~k~lel~~~~~e~vdswkasflr  103 (110)
T cd01256          61 MSRNHKFALFYPDGRNVYKDYKQLELGCETLEEVDSWKASFLR  103 (110)
T ss_pred             cCCCcEEEEEcCcccccccchheeeecCCCHHHHHHHHHHHHh
Confidence            566799999874        46899999999999999876644

Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0706|consensus

Probab=80.51  E-value=0.78  Score=42.91  Aligned_cols=37  Identities=19%  Similarity=0.282  Sum_probs=30.4

Q ss_pred             CCcccccccccccccccccccccccceeccCccCCeecccC
Q psy2207          83 RVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY  123 (305)
Q Consensus        83 ~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~  123 (305)
                      ++..|.+|+.+-+.|...    .=|..+|-.||..|+.|+-
T Consensus        22 ~NKvCFDCgAknPtWaSV----TYGIFLCiDCSAvHRnLGV   58 (454)
T KOG0706|consen   22 ENKVCFDCGAKNPTWASV----TYGIFLCIDCSAVHRNLGV   58 (454)
T ss_pred             CCceecccCCCCCCceee----cceEEEEEecchhhhcccc
Confidence            367899999988777664    3479999999999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	305
3mpx_A	434	Crystal Structure Of The Dh And Ph-1 Domains Of Hum		1e-15
1wgq_A	109	Solution Structure Of The Pleckstrin Homology Domai		2e-15
3t7l_A	90	Crystal Structure Of The Fyve Domain Of Endofin (Zf		1e-12
2yry_A	122	Solution Structure Of The Ph Domain Of Pleckstrin H		1e-10
2d9y_A	117	Solution Structure Of The Ph Domain Of Pepp-3 From		1e-10
1z2q_A	84	High-Resolution Solution Structure Of The Lm5-1 Fyv		5e-10
3zyq_A	226	Crystal Structure Of The Tandem Vhs And Fyve Domain		5e-09
1dvp_A	220	Crystal Structure Of The Vhs And Fyve Tandem Domain		7e-09
1joc_A	125	Eea1 Homodimer Of C-Terminal Fyve Domain Bound To I		9e-09
2yqm_A	89	Solution Structure Of The Fyve Domain In Zinc Finge		2e-08
2dkp_A	128	Solution Structure Of The Ph Domain Of Pleckstrin H		5e-08
2yw8_A	82	Crystal Structure Of Human Run And Fyve Domain-Cont		9e-08
1hyi_A	65	Solution Structure Of The Eea1 Fyve Domain Complexe		2e-07
1upq_A	123	Crystal Structure Of The Pleckstrin Homology (Ph) D		3e-07
1v89_A	118	Solution Structure Of The Pleckstrin Homology Domai		7e-07
1vfy_A	73	Phosphatidylinositol-3-Phosphate Binding Fyve Domai		9e-05

>pdb|3MPX|A Chain A, Crystal Structure Of The Dh And Ph-1 Domains Of Human Fgd5 Length = 434

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 4/137 (2%)
Query: 2   KVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKEN--EQHLLSFLNRR 59
           KV  P  E       +        L A S  ER EW   +  A+ E+   Q L +F    
Sbjct: 293 KVSRPVXEKVPYALKIETSESCLXLSASSCAERDEWYGCLSRALPEDYKAQALAAF--HH 350
Query: 60  SLTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLA 119
           S+       ++LG+  P  +P + V  C  C   F++T RRHHC ACGK+VC  CS    
Sbjct: 351 SVEIRERLGVSLGERPPTLVPVTHVXXCXNCGCDFSLTLRRHHCHACGKIVCRNCSRNKY 410
Query: 120 PLEYKKFRNFRVCEECY 136
           PL+Y K R  +VC+ C+
Sbjct: 411 PLKYLKDRXAKVCDGCF 427

>pdb|1WGQ|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of Mouse Ethanol Decreased 4 Protein Length = 109

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 56/86 (65%)
Query: 218 KKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQG 277
           K S + WK  WFV+K++V+Y Y ASED+ AL S P+LG+ +  + ++++   VFQL H+G
Sbjct: 18  KGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVKDENSESKVFQLLHKG 77
Query: 278 QDPLVFGADNEQSYERWMKAMREATT 303
               VF AD+  S +RW+ A +E T 
Sbjct: 78  MVFYVFKADDAHSTQRWIDAFQEGTV 103

>pdb|3T7L|A Chain A, Crystal Structure Of The Fyve Domain Of Endofin (Zfyve16) At 1.1a Resolution Length = 90

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/90 (42%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 65  SIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYK 124
           S+  L LG+  P W+PDS    C  C   FT T RRHHCRACGKV CG C +    L+Y 
Sbjct: 1   SMEGLVLGQKQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYL 60
Query: 125 KFRNFRVCEECYHYLVQEFDDEDSNMFERV 154
           + +  RVC  CY  +        +  FER+
Sbjct: 61  E-KEARVCVVCYETI------SKAQAFERM 83

>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology Domain-Containing Family A Member 6 From Human Length = 122

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 213 SGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF-- 267
           +GWL K++    + W + WFVL D+ ++ YK  ++   L SIP+L + + A+   DN   
Sbjct: 25  AGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNISR 84
Query: 268 KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 304
           K+ F+ +H G     F A++ +  E W++AM EA  +
Sbjct: 85  KHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARV 121

>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human Length = 117

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 213 SGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF-- 267
           +GWL K++    + W + WFVL D+ ++ YK  ++   L SIP+L + + A+   DN   
Sbjct: 14  AGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNISR 73
Query: 268 KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
           K+ F+ +H G     F A++ +  E W++AM EA 
Sbjct: 74  KHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 108

>pdb|1Z2Q|A Chain A, High-Resolution Solution Structure Of The Lm5-1 Fyve Domain From Leishmania Major Length = 84

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 78  WIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRN-FRVCEECY 136
           W  D     C  C  VFT T RRHHCR CG V+CG CS + A +  +      RVC+ CY
Sbjct: 15  WQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACY 74

>pdb|3ZYQ|A Chain A, Crystal Structure Of The Tandem Vhs And Fyve Domains Of Hepatocyte Growth Factor-Regulated Tyrosine Kinase Substrate (Hgs-Hrs) At 1.48 A Resolution Length = 226

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 75  APLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSD-YLAPLEYKKFRNFRVCE 133
           AP W+       C RC   F V  R+HHCRACG++ CG CS  Y    ++   +  RVCE
Sbjct: 158 APDWVDAEE---CHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCE 214
Query: 134 ECYHYL 139
            CY  L
Sbjct: 215 PCYEQL 220

>pdb|1DVP|A Chain A, Crystal Structure Of The Vhs And Fyve Tandem Domains Of Hrs, A Protein Involved In Membrane Trafficking And Signal Transduction Length = 220

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 74  VAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPL-EYKKFRNFRVC 132
            AP W  D RV  C RC   FT T R+HHCR CG+V CG C+    PL +Y   +  RVC
Sbjct: 154 TAPNWA-DGRV--CHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVC 210
Query: 133 EECYHYL 139
           + C+  L
Sbjct: 211 DGCFAAL 217

>pdb|1JOC|A Chain A, Eea1 Homodimer Of C-Terminal Fyve Domain Bound To Inositol 1,3-Diphosphate Length = 125

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 78  WIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCS--DYLAPLEYKKFRNFRVCEEC 135
           W  D+ V  C  C   F+VT RRHHCR CG + C  CS  + L P   K     RVC+ C
Sbjct: 63  WAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKP---VRVCDAC 119
Query: 136 YHYL 139
           ++ L
Sbjct: 120 FNDL 123

>pdb|2YQM|A Chain A, Solution Structure Of The Fyve Domain In Zinc Finger Fyve Domain-Containing Protein 12 Length = 89

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 60  SLTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPC-SDYL 118
           S   S I E+N       W+ D   + C++C   F+++ R+HHCR CG + C  C S+ L
Sbjct: 2   SSGSSGIKEVNQALKGHAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNEL 61
Query: 119 APLEYKKFRNFRVCEECYHYLVQEFDDEDS 148
           A   Y K    RVC+ C+  L+Q      S
Sbjct: 62  ALPSYPK--PVRVCDSCHTLLLQRCSSTAS 89

>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology Domain-Containing Protein Family A Member 5 From Human Length = 128

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 214 GWLHKKSGRN---WKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQD--NFK 268
           GWL+K+       WK+ WFVL D  ++ Y+  ++   L SI +  +++  L  +D  N K
Sbjct: 25  GWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIALLTSEDHINRK 84
Query: 269 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
           Y F+  H       F  D  +  E WMKAM +A 
Sbjct: 85  YAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAA 118

>pdb|2YW8|A Chain A, Crystal Structure Of Human Run And Fyve Domain-Containing Protein Length = 82

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 66  IPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPC-SDYLAPLEYK 124
           I E+N       W+ D   + C++C   F+++ R+HHCR CG + C  C S+ LA   Y 
Sbjct: 1   IKEVNQALKGHAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYP 60
Query: 125 KFRNFRVCEECYHYLVQ 141
           K    RVC+ C+  L+Q
Sbjct: 61  K--PVRVCDSCHTLLLQ 75

>pdb|1HYI|A Chain A, Solution Structure Of The Eea1 Fyve Domain Complexed With Inositol 1,3-Bisphosphate Length = 65

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 78  WIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCS--DYLAPLEYKKFRNFRVCEEC 135
           W  D+ V  C  C   F+VT RRHHCR CG + C  CS  + L P   K     RVC+ C
Sbjct: 3   WAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSKKP---VRVCDAC 59
Query: 136 YHYL 139
           ++ L
Sbjct: 60  FNDL 63

>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain Of Pepp1 Length = 123

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 214 GWLHKK--SG-RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYEL--EALNEQDNFK 268
           GWLHK+  SG R WKR WFVL    ++ YK S +   L S+ +  Y +  +        +
Sbjct: 15  GWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAPRGRR 74
Query: 269 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
           + F  +H G    V  AD  +    W++A+  A+
Sbjct: 75  FTFTAEHPGMRTYVLAADTLEDLRGWLRALGRAS 108

>pdb|1V89|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of Human Kiaa0053 Protein Length = 118

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 11/107 (10%)
Query: 204 TANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIK--ALLSIPVLGYELE 259
           ++  SG    GWL K+    +NW++ +FVL+ Q +Y YK  ED K    + +P    +  
Sbjct: 2   SSGSSGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEI 61
Query: 260 ALNEQDNFKYVFQL-------KHQGQDPLVFGADNEQSYERWMKAMR 299
           A N ++  K+VF++          GQD  V  A ++   E W+K +R
Sbjct: 62  ATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLR 108

>pdb|1VFY|A Chain A, Phosphatidylinositol-3-Phosphate Binding Fyve Domain Of Vps27p Protein From Saccharomyces Cerevisiae Length = 73

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 87  CQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPL-EYKKFRNFRVCEECY 136
           C  C+  F++  R+HHCR+CG V C   S    PL +   +   RVC+ C+
Sbjct: 14  CMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCF 64

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	305
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	5e-37
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	3e-33
3t7l_A	90	Zinc finger FYVE domain-containing protein 16; str	2e-30
2yw8_A	82	RUN and FYVE domain-containing protein 1; structur	1e-28
1z2q_A	84	LM5-1; membrane protein, FYVE domain, zinc-finger;	2e-27
1joc_A	125	EEA1, early endosomal autoantigen 1; FYVE domain,	2e-26
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	2e-26
2d9y_A	117	Pleckstrin homology domain-containing protein fami	3e-26
1wfk_A	88	Zinc finger, FYVE domain containing 19; riken stru	9e-26
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	3e-25
2yry_A	122	Pleckstrin homology domain-containing family A mem	3e-25
1x4u_A	84	Zinc finger, FYVE domain containing 27 isoform B;	1e-24
2dkp_A	128	Pleckstrin homology domain-containing family A mem	2e-24
1vfy_A	73	Phosphatidylinositol-3-phosphate binding FYVE doma	7e-23
3cxb_B	112	Pleckstrin homology domain-containing family M mem	9e-23
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	1e-22
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	1e-20
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	1e-20
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	2e-20
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	8e-20
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	1e-19
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	5e-19
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	4e-18
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	2e-17
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	7e-04
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	3e-17
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	4e-17
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	3e-04
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	5e-17
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	4e-05
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	7e-17
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	1e-05
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	7e-17
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	1e-16
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	1e-16
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	3e-06
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	1e-16
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	2e-05
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	1e-16
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	3e-05
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	2e-16
1wi1_A	126	Calcium-dependent activator protein for secretion,	8e-16
1wi1_A	126	Calcium-dependent activator protein for secretion,	8e-06
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	8e-16
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	1e-05
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	3e-15
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	3e-15
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	2e-06
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	4e-15
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	2e-05
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	9e-15
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	1e-14
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	4e-04
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	1e-14
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	2e-14
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	8e-04
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	4e-14
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	5e-14
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	5e-14
2d9v_A	130	Pleckstrin homology domain-containing protein fami	5e-14
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	7e-14
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	1e-13
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	8e-06
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	2e-13
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	2e-13
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	2e-13
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	4e-13
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	1e-04
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	4e-13
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	9e-13
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	1e-12
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	7e-12
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	7e-12
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	8e-12
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	1e-04
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	1e-11
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	2e-11
1y02_A	120	CARP2, FYVE-ring finger protein sakura; zinc-bindi	2e-11
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	3e-11
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	8e-06
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	6e-09
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	7e-09
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	2e-08
1v61_A	132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	4e-08
1v61_A	132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	3e-04
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	1e-07
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	9e-04
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	2e-07
2zet_C	153	Melanophilin; complex, GTP-binding protein, GTPase	2e-07
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	3e-07
1zc3_B	113	Exocyst complex protein EXO84; exocytosis, small G	4e-07
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	4e-07
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	2e-06
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	4e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	6e-06
1kz7_A	353	Guanine nucleotide exchange factor DBS; guanine nu	7e-05
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	8e-05
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	9e-05
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	1e-04
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	1e-04

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} Length = 434

 Score =  135 bits (342), Expect = 5e-37
 Identities = 47/142 (33%), Positives = 66/142 (46%)

Query: 1   MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
           MKV  P  E       +        L A S  ER EW   +  A+ E+ +         S
Sbjct: 292 MKVSRPVMEKVPYALKIETSESCLMLSASSCAERDEWYGCLSRALPEDYKAQALAAFHHS 351

Query: 61  LTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAP 120
           +       ++LG+  P  +P + V MC  C   F++T RRHHC ACGK+VC  CS    P
Sbjct: 352 VEIRERLGVSLGERPPTLVPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYP 411

Query: 121 LEYKKFRNFRVCEECYHYLVQE 142
           L+Y K R  +VC+ C+  L + 
Sbjct: 412 LKYLKDRMAKVCDGCFGELKKR 433

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 109

 Score =  117 bits (294), Expect = 3e-33
 Identities = 42/101 (41%), Positives = 64/101 (63%), Gaps = 2/101 (1%)

Query: 205 ANDSGSQHSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN 262
           +  SGS  SG+L++  G    WK  WFV+K++V+Y Y ASED+ AL S P+LG+ +  + 
Sbjct: 3   SGSSGSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVK 62

Query: 263 EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303
           ++++   VFQL H+G    VF AD+  S +RW+ A +E T 
Sbjct: 63  DENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTV 103

>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens} Length = 90

 Score =  109 bits (274), Expect = 2e-30
 Identities = 36/84 (42%), Positives = 45/84 (53%), Gaps = 1/84 (1%)

Query: 65  SIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYK 124
           S+  L LG+  P W+PDS    C  C   FT T RRHHCRACGKV CG C +    L+Y 
Sbjct: 1   SMEGLVLGQKQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYL 60

Query: 125 KFRNFRVCEECYHYLVQEFDDEDS 148
           + +  RVC  CY  + +    E  
Sbjct: 61  E-KEARVCVVCYETISKAQAFERM 83

>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A Length = 82

 Score =  104 bits (261), Expect = 1e-28
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 66  IPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKK 125
           I E+N       W+ D   + C++C   F+++ R+HHCR CG + C  CS     L    
Sbjct: 1   IKEVNQALKGHAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPSYP 60

Query: 126 FRNFRVCEECYHYLVQEFDDEDS 148
            +  RVC+ C+  L+Q      S
Sbjct: 61  -KPVRVCDSCHTLLLQRCSSTAS 82

>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major} Length = 84

 Score =  100 bits (252), Expect = 2e-27
 Identities = 28/68 (41%), Positives = 34/68 (50%), Gaps = 1/68 (1%)

Query: 73  KVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRN-FRV 131
           +    W  D     C  C  VFT T RRHHCR CG V+CG CS + A +  +      RV
Sbjct: 10  QSKGYWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERV 69

Query: 132 CEECYHYL 139
           C+ CY  L
Sbjct: 70  CDACYLAL 77

>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A Length = 125

 Score =  100 bits (249), Expect = 2e-26
 Identities = 32/117 (27%), Positives = 51/117 (43%), Gaps = 5/117 (4%)

Query: 27  RARSANERLE-WIDAIQTAIKENEQ---HLLSFLNRRSLTQSSIPELNLGKVAPLWIPDS 82
                  + E  I+ +QT + E ++   +  + +        S+   +   +   W  D+
Sbjct: 8   ALLERCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQIKHTQALNRKWAEDN 67

Query: 83  RVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYL 139
            V  C  C   F+VT RRHHCR CG + C  CS   A     K +  RVC+ C++ L
Sbjct: 68  EVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSK-KPVRVCDACFNDL 123

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 112

 Score = 99.3 bits (247), Expect = 2e-26
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 204 TANDSGSQHSGWLHK-KSGRNWKRYWFVLKD---QVMYKYKASEDIKALLSIPVLGYELE 259
           ++  SGS   G L   +SG  W   W  +     QV++    S+D +   +IP+   +L 
Sbjct: 2   SSGSSGSLLCGPLRLSESGETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLS 61

Query: 260 ALNEQDNF--KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303
             + ++     +V++L    +      A + +  ++W++ +  A  
Sbjct: 62  VPDPEERLDSGHVWKL-QWAKQSWYLSASSAELQQQWLETLSTAAH 106

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 117

 Score = 99.4 bits (248), Expect = 3e-26
 Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 5/104 (4%)

Query: 204 TANDSGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEA 260
           ++ ++    +GWL K++    + W + WFVL D+ ++ YK  ++   L SIP+L + + A
Sbjct: 5   SSGNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAA 64

Query: 261 LNEQD--NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
           +   D  + K+ F+ +H G     F A++ +  E W++AM EA 
Sbjct: 65  VQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 108

>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1 Length = 88

 Score = 97.2 bits (242), Expect = 9e-26
 Identities = 17/73 (23%), Positives = 29/73 (39%)

Query: 78  WIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYH 137
                  S C  C   FT+  + + C+ CG+  C  C  + A +        +VC++C+ 
Sbjct: 3   SGSSGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHT 62

Query: 138 YLVQEFDDEDSNM 150
            L +   D  S  
Sbjct: 63  ILTRGSSDNASKW 75

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 107

 Score = 96.5 bits (240), Expect = 3e-25
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 2/100 (2%)

Query: 204 TANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIK-ALLSIPVLGYELEALN 262
           ++  SG + S +L+      WK  W  ++D  ++ Y+     K A   + ++G E+    
Sbjct: 2   SSGSSGLETSSYLNVLVNSQWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDP 61

Query: 263 EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
             D+  Y F++ H+G++     A + +    W+  +   +
Sbjct: 62  SPDH-LYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSES 100

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 122

 Score = 96.7 bits (241), Expect = 3e-25
 Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 5/104 (4%)

Query: 206 NDSGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN 262
            ++    +GWL K++    + W + WFVL D+ ++ YK  ++   L SIP+L + + A+ 
Sbjct: 18  PNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQ 77

Query: 263 EQD--NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 304
             D  + K+ F+ +H G     F A++ +  E W++AM EA  +
Sbjct: 78  PSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARV 121

>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 84

 Score = 94.2 bits (234), Expect = 1e-24
 Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 7/75 (9%)

Query: 75  APLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNF----- 129
           +    P +    C  C++ F+V  +R  C  CG   C  C  +  P              
Sbjct: 5   SSGRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRE 64

Query: 130 --RVCEECYHYLVQE 142
              VC  C   L + 
Sbjct: 65  TVFVCASCNQTLSKS 79

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens} Length = 128

 Score = 94.5 bits (235), Expect = 2e-24
 Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 17/129 (13%)

Query: 181 GTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGR---NWKRYWFVLKDQVMY 237
           G++G+R  S K               ++     GWL+K+       WK+ WFVL D  ++
Sbjct: 4   GSSGKRSNSIKRNP------------NAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLF 51

Query: 238 KYKASEDIKALLSIPVLGYELEALNEQDNF--KYVFQLKHQGQDPLVFGADNEQSYERWM 295
            Y+  ++   L SI +  +++  L  +D+   KY F+  H       F  D  +  E WM
Sbjct: 52  YYRDEKEEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYYFCTDTGKEMELWM 111

Query: 296 KAMREATTL 304
           KAM +A  +
Sbjct: 112 KAMLDAALV 120

>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1 Length = 73

 Score = 89.0 bits (221), Expect = 7e-23
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 73  KVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRN-FRV 131
           K    WI       C  C+  F++  R+HHCR+CG V C   S    PL         RV
Sbjct: 3   KTPADWIDSDA---CMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRV 59

Query: 132 CEECYHYL 139
           C+ C+   
Sbjct: 60  CDSCFEDY 67

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B Length = 112

 Score = 89.8 bits (223), Expect = 9e-23
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 8/99 (8%)

Query: 213 SGWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDN 266
            G LH K+G       +WK  + VL + ++Y+Y    D+  LLS+ + G +       + 
Sbjct: 3   EGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPLLSVNMGGEQCGGCRRANT 62

Query: 267 F--KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303
               + FQ+    +  L   A++E     WM+ + +A +
Sbjct: 63  TDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVS 101

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A* Length = 123

 Score = 89.8 bits (223), Expect = 1e-22
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 207 DSGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE 263
           +      GWLHK+     R WKR WFVL    ++ YK S +   L S+ +  Y +     
Sbjct: 8   NLPVHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGP 67

Query: 264 QD--NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303
                 ++ F  +H G    V  AD  +    W++A+  A+ 
Sbjct: 68  GAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASR 109

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 113

 Score = 84.3 bits (209), Expect = 1e-20
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 212 HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYEL-EALNEQDNFK 268
             G+L KK      WK  W VL +  +  YK   D      IP+ G  L     +     
Sbjct: 7   REGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFGKRM 66

Query: 269 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303
           +VF++    Q    F A   +  + W++ + +A  
Sbjct: 67  FVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIK 101

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 Length = 108

 Score = 84.0 bits (208), Expect = 1e-20
 Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 9/99 (9%)

Query: 212 HSGWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQD 265
             G+L KKS         W++ W V+   + Y Y   +  +   +  + GY +       
Sbjct: 5   KQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPHLR 64

Query: 266 ---NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
                +  F+L  Q +    F A +      W+  +   
Sbjct: 65  RDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFL 103

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A Length = 148

 Score = 84.6 bits (209), Expect = 2e-20
 Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 9/99 (9%)

Query: 212 HSGWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQD 265
            +G+L K+          W++ W  L   V Y Y + +D +      + GY++   N   
Sbjct: 19  KAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLR 78

Query: 266 NF---KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
                   F++    +    F A + +  E W++ ++  
Sbjct: 79  KDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFI 117

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A Length = 406

 Score = 88.0 bits (218), Expect = 8e-20
 Identities = 14/119 (11%), Positives = 36/119 (30%), Gaps = 19/119 (15%)

Query: 6   PQTEDYNNEFSVIAIS--RSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQ 63
              + +++ F +I     + + L  ++   + +W++  + AI              +   
Sbjct: 293 RDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIYP-------ENATAN 345

Query: 64  SSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTF-RRHHCRACGKVVCGPCSDYLAPL 121
               +                + C+ C  +   TF + + C  C       C   + P 
Sbjct: 346 GHDFQ---------MFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVPPC 395

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A Length = 211

 Score = 84.4 bits (208), Expect = 1e-19
 Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 10/133 (7%)

Query: 179 EMGTAGRRKPSKKYRKYVPQRLIEVTANDSGS-QHSGWLHKKSG------RNWKRYWFVL 231
            +  A  R            +   + A D      +G+L K+          W++ W  L
Sbjct: 74  TISLASERYDKDDDGPSDGNQFPPIAAQDLPFVIKAGYLEKRRKDHSFLGFEWQKRWCAL 133

Query: 232 KDQVMYKYKASEDIKALLSIPVLGYELEALNEQD---NFKYVFQLKHQGQDPLVFGADNE 288
              V Y Y + +D +      + GY++   N           F++    +    F A + 
Sbjct: 134 SKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASP 193

Query: 289 QSYERWMKAMREA 301
           +  E W++ ++  
Sbjct: 194 KDAEEWVQQLKFI 206

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 118

 Score = 80.2 bits (198), Expect = 5e-19
 Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 11/102 (10%)

Query: 212 HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEAL--NEQDNF 267
             GWL K+    +NW++ +FVL+ Q +Y YK  ED K    + + G  ++ +  N ++  
Sbjct: 10  KMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAG 69

Query: 268 KYVFQLKHQGQDPL-------VFGADNEQSYERWMKAMREAT 302
           K+VF++     D         V  A ++   E W+K +R   
Sbjct: 70  KFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVA 111

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A Length = 129

 Score = 77.9 bits (192), Expect = 4e-18
 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 212 HSGWLHKKSG--RNWKRYWFVLKD--QVMYKYKASEDIKALLSIPVLGYELEALNEQDNF 267
             G L K+    +NWK   F+L++    ++ Y  +     L +I + G  + ++    N 
Sbjct: 20  KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 79

Query: 268 K-----YVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
           +      +F++    +      A   +    W+KA++ A
Sbjct: 80  RKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 118

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 129

 Score = 76.1 bits (187), Expect = 2e-17
 Identities = 19/105 (18%), Positives = 44/105 (41%), Gaps = 13/105 (12%)

Query: 212 HSGWLHKKSG--RNWKRYWFVLKD---QVMYKYKASEDIKALLSIPVLGYELEALNE--- 263
             G+L K+    +NWK   FVL+     + Y   + E+ + +    + G  + AL +   
Sbjct: 20  KQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGV 79

Query: 264 -----QDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303
                 +    +F++  +        A ++     W++A+++ T+
Sbjct: 80  PTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLTS 124

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 129

 Score = 38.0 bits (88), Expect = 7e-04
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 6   PQTEDYNNEFSVIAISR-SFTLRARSANERLEWIDAIQTAIK 46
            +     N F VI      + ++A S  ER EWI+AI+    
Sbjct: 83  VKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLTS 124

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* Length = 226

 Score = 77.9 bits (191), Expect = 3e-17
 Identities = 30/120 (25%), Positives = 42/120 (35%), Gaps = 2/120 (1%)

Query: 27  RARSANERLEWIDAIQTAIKENEQHLLSF-LNRRSLTQSSIPELNLGKVAPLWIPDSRVS 85
           R +       W  A +   K          +           E +    A          
Sbjct: 106 RNKILYLIQAWAHAFRNEPKYKVVQDTYQIMKVEGHVFPEFKESDAMFAAERAPDWVDAE 165

Query: 86  MCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRN-FRVCEECYHYLVQEFD 144
            C RC   F V  R+HHCRACG++ CG CS   + +         RVCE CY  L ++ +
Sbjct: 166 ECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNRKAE 225

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A Length = 109

 Score = 74.7 bits (184), Expect = 4e-17
 Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 9/100 (9%)

Query: 212 HSGWLHKKSG--RNWKRYWFVLKDQ--VMYKYKASEDIKALLSIPVLGYELEALNEQDNF 267
             G L K+    +NWK   F+L++    ++ Y  +     L +I + G  + ++    N 
Sbjct: 9   KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 68

Query: 268 K-----YVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
           +      +F++    +      A   +    W+KA++ A+
Sbjct: 69  RKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS 108

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A Length = 109

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 10  DYNNEFSVIAISR-SFTLRARSANERLEWIDAIQTAIK 46
           +  N F +I      + L+A +  ER EWI AIQ A +
Sbjct: 72  EEENLFEIITADEVHYFLQAATPKERTEWIKAIQMASR 109

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 74.8 bits (184), Expect = 5e-17
 Identities = 21/104 (20%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 204 TANDSGSQHSGWLHKKSGR----NWKRYWFVLKDQ--VMYKYKASEDIKALLSIPVLGYE 257
           ++  SG +  G+L K  G+     WK  WF   ++   +Y  + ++D   L SI +    
Sbjct: 2   SSGSSGKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDANPLDSIDLSSAV 61

Query: 258 LEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
            +   + D  + +F++K   +  +   A  +Q+   W++ ++  
Sbjct: 62  FDC--KADAEEGIFEIKTPSRV-ITLKAATKQAMLYWLQQLQMK 102

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 10/42 (23%), Positives = 17/42 (40%)

Query: 6   PQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKE 47
            + +     F +   SR  TL+A +    L W+  +Q    E
Sbjct: 64  CKADAEEGIFEIKTPSRVITLKAATKQAMLYWLQQLQMKRWE 105

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 149

 Score = 75.2 bits (184), Expect = 7e-17
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 212 HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGY-ELEALNEQDNFK 268
             G+L  K    R ++ YW  L+   ++ Y   + I  +  + ++    L   N  +   
Sbjct: 20  FEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNSTEKNC 79

Query: 269 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 305
             F L    ++ +    +N +S E W   +   T LS
Sbjct: 80  AKFTLVLPKEE-VQLKTENTESGEEWRGFILTVTELS 115

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 149

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 10/49 (20%), Positives = 19/49 (38%)

Query: 8   TEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFL 56
           TE    +F+++       L+  +     EW   I T  + +    +S L
Sbjct: 75  TEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTELSVPQNVSLL 123

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 150

 Score = 75.0 bits (184), Expect = 7e-17
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 13/108 (12%)

Query: 207 DSGSQHSGWLHKKSG--------RNWKRYWFVLK-----DQVMYKYKASEDIKALLSIPV 253
             G    GWL+K +         R++KR +F L         +  YK  +  K       
Sbjct: 15  KGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIF 74

Query: 254 LGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
           L   +  +      ++ F+LK Q +   +  AD+E   E W+  + + 
Sbjct: 75  LDSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKI 122

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 Length = 220

 Score = 76.3 bits (187), Expect = 1e-16
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 2/118 (1%)

Query: 24  FTLRARSANERLEWIDAIQTAIKENE-QHLLSFLNRRSLTQSSIPELNLGKVAPLWIPDS 82
             +R +       W  A +++ K    +  ++ L  +  T   + E +    A      +
Sbjct: 100 ENVRQKMLELVQTWAYAFRSSDKYQAIKDTMTILKAKGHTFPELREADAMFTADTAPNWA 159

Query: 83  RVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPL-EYKKFRNFRVCEECYHYL 139
              +C RC   FT T R+HHCR CG+V CG C+    PL +Y   +  RVC+ C+  L
Sbjct: 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAAL 217

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus} Length = 228

 Score = 76.2 bits (187), Expect = 1e-16
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 212 HSGWLHKKSG-------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ 264
             GWLH   G       RNWK+ WFVL+   +  ++   + K   ++ V     + + + 
Sbjct: 60  KQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKLKGTVEVRSA--KEIIDN 117

Query: 265 DNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
            N +    +           A++ +   +W   + + 
Sbjct: 118 TNKENGIDIIM-ADRTFHLIAESPEDASQWFSVLSQV 153

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus} Length = 228

 Score = 46.5 bits (110), Expect = 3e-06
 Identities = 14/71 (19%), Positives = 31/71 (43%)

Query: 13  NEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSIPELNLG 72
           N   +I   R+F L A S  +  +W   +       +Q +    + ++  Q+++  L++G
Sbjct: 122 NGIDIIMADRTFHLIAESPEDASQWFSVLSQVHSSTDQEIREMHDEQANPQNAVGTLDVG 181

Query: 73  KVAPLWIPDSR 83
            +  +   DS 
Sbjct: 182 LIDSVCASDSP 192

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Length = 126

 Score = 73.6 bits (181), Expect = 1e-16
 Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 3/97 (3%)

Query: 207 DSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ 264
            S     G+L K+ G  + WK  WF L    +  +K     + +  + +        +  
Sbjct: 15  PSLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYS 74

Query: 265 DNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
                 F L    +      A      + W+K +R  
Sbjct: 75  QERVNCFCLVFPFRT-FYLCAKTGVEADEWIKILRWK 110

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Length = 126

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 12/50 (24%), Positives = 25/50 (50%)

Query: 3   VCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHL 52
           V    +++  N F ++   R+F L A++  E  EWI  ++  + +  + L
Sbjct: 69  VQFDYSQERVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQIRKQL 118

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1 Length = 125

 Score = 73.7 bits (181), Expect = 1e-16
 Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 212 HSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGY---ELEALNEQDN 266
            +G+  K+     NWKR +F L +  +  +K+  + + L  IP+      +    ++   
Sbjct: 16  KAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMM 75

Query: 267 FKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
              +F++    +      AD+ +    W+KA+  A
Sbjct: 76  RDNLFEIVTTSR-TFYVQADSPEEMHSWIKAVSGA 109

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1 Length = 125

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 12  NNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQ 50
           +N F ++  SR+F ++A S  E   WI A+  AI     
Sbjct: 77  DNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQRG 115

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A Length = 120

 Score = 73.5 bits (180), Expect = 2e-16
 Identities = 21/113 (18%), Positives = 51/113 (45%), Gaps = 19/113 (16%)

Query: 212 HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKA---LLSIPVLGYELEALNEQD- 265
            SG+L ++S   +++ + ++VL    ++++K ++  K    ++S+ +    +   + ++ 
Sbjct: 8   KSGFLERRSKFLKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTVTEHSRKNS 67

Query: 266 ---------NFKYVFQLKHQG----QDPLVFGADNEQSYERWMKAMREATTLS 305
                    + K+V   K  G        VF AD+ +S   W   ++  T+ S
Sbjct: 68  TSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILTSTS 120

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 126

 Score = 71.5 bits (175), Expect = 8e-16
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 11/106 (10%)

Query: 207 DSGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKA----SEDIKALLSIPVLGYEL- 258
            SG +HSG+L        + WK+ +FVL     Y +       +  +    + + GY + 
Sbjct: 5   SSGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVD 64

Query: 259 --EALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
             +     +  +  F    +G D ++F +D+EQ    W++AM  AT
Sbjct: 65  YTDPQPGLEGGRAFFNAVKEG-DTVIFASDDEQDRILWVQAMYRAT 109

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 126

 Score = 43.8 bits (103), Expect = 8e-06
 Identities = 7/42 (16%), Positives = 16/42 (38%)

Query: 6   PQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKE 47
           P  E     F+ +    +    +    +R+ W+ A+  A  +
Sbjct: 70  PGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATGQ 111

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 115

 Score = 71.3 bits (175), Expect = 8e-16
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 212 HSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFK 268
            SGWL K S    R +++ W       +  Y   +++ +   IP+       +       
Sbjct: 10  KSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQG----D 65

Query: 269 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
             F++    +   VF  + E+    W+  +  A
Sbjct: 66  NKFEVVTTQRT-FVFRVEKEEERNDWISILLNA 97

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 115

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 12/44 (27%), Positives = 19/44 (43%)

Query: 4   CLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKE 47
                   +N+F V+   R+F  R     ER +WI  +  A+K 
Sbjct: 57  ISTVRVQGDNKFEVVTTQRTFVFRVEKEEERNDWISILLNALKS 100

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Length = 587

 Score = 74.7 bits (183), Expect = 3e-15
 Identities = 18/126 (14%), Positives = 36/126 (28%), Gaps = 26/126 (20%)

Query: 6   PQTEDYNNEFSVIAIS--RSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQ 63
              + +++ F +I     + + L  ++   + +W++  + AI                  
Sbjct: 465 RDNKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIYP------------- 511

Query: 64  SSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTF----RRHHCRACGKVVC----GPCS 115
                                + C+ C  +   TF    R H CRA     C     PC 
Sbjct: 512 ---ENATANGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRVPPCG 568

Query: 116 DYLAPL 121
            +    
Sbjct: 569 RHGQDF 574

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 69.7 bits (171), Expect = 3e-15
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 4/93 (4%)

Query: 212 HSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYEL-EALNEQDNFK 268
             G++ KK  R  NW   WFVLK  ++  Y + +       I +      E+L ++D  K
Sbjct: 10  KQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDKDGKK 69

Query: 269 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
            +F +K   +      A +++  + W++A+   
Sbjct: 70  CLFLVKCFDKT-FEISASDKKKKQEWIQAIHST 101

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 5   LPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIK 46
           LP  +     F V    ++F + A    ++ EWI AI + I 
Sbjct: 62  LPDKDGKKCLFLVKCFDKTFEISASDKKKKQEWIQAIHSTIH 103

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 126

 Score = 69.6 bits (170), Expect = 4e-15
 Identities = 16/110 (14%), Positives = 44/110 (40%), Gaps = 14/110 (12%)

Query: 206 NDSGSQHSGWLHKKSG---RNWKRYWFVLKDQ--VMYKYKASEDIKALLSIPVLGYELEA 260
            D  ++  G+L  +       + R +F+L  Q   +  Y  +    A+ +  V   +L  
Sbjct: 11  VDRQNRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTY 70

Query: 261 L--------NEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
           +         ++    + F + +         A++++  + W++A+ +A+
Sbjct: 71  ISKVSIATPKQKPKTPFCFVI-NALSQRYFLQANDQKDLKDWVEALNQAS 119

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 126

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 7   QTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIK 46
           Q       F + A+S+ + L+A    +  +W++A+  A K
Sbjct: 81  QKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASK 120

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A* Length = 129

 Score = 68.8 bits (168), Expect = 9e-15
 Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 19/108 (17%)

Query: 213 SGWLH--------KKSGRNWKRYWFVLKDQVMYKYK-----------ASEDIKALLSIPV 253
           SG L+        +K  +NW   W VL    +  Y+                +   S+ +
Sbjct: 15  SGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDL 74

Query: 254 LGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
            G  L       + + V  ++       +  +D+E     W +A+R  
Sbjct: 75  RGAALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTV 122

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A* Length = 127

 Score = 68.5 bits (167), Expect = 1e-14
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 24/113 (21%)

Query: 212 HSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKY 269
             GWL K  GR   WKR WF+L D  +Y ++ + D +    IP+    +  + +      
Sbjct: 7   REGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLDPRK-PN 65

Query: 270 VFQLKHQGQDPL---------------------VFGADNEQSYERWMKAMREA 301
            F+L +                              A + +  E WMK+++ +
Sbjct: 66  CFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKAS 118

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A* Length = 127

 Score = 38.8 bits (90), Expect = 4e-04
 Identities = 8/34 (23%), Positives = 16/34 (47%)

Query: 15  FSVIAISRSFTLRARSANERLEWIDAIQTAIKEN 48
             V      + + A S  E+ EW+ +I+ +I  +
Sbjct: 89  RVVEGNHVVYRISAPSPEEKEEWMKSIKASISRD 122

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1 Length = 122

 Score = 68.4 bits (167), Expect = 1e-14
 Identities = 18/119 (15%), Positives = 45/119 (37%), Gaps = 18/119 (15%)

Query: 205 ANDSGSQHSGWLHKK----------SGRNWKRYWFVLKDQVMYKYKASEDIKAL------ 248
              +G  H G++ +K          S R+W + +   K   +  YK  +  K+       
Sbjct: 3   GTGAGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFR 62

Query: 249 --LSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 305
              S  +    +E  ++    K+V ++K       +  A ++    +W+ +++  +  +
Sbjct: 63  GEPSYDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSDST 121

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 67.2 bits (164), Expect = 2e-14
 Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 8/99 (8%)

Query: 206 NDSGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN 262
           +  GS+  G+L KKS    + W+R    +K+ ++    A+ + +    + +L  +++   
Sbjct: 6   SGYGSEKKGYLLKKSDGIRKVWQRRKCSVKNGILTISHATSN-RQPAKLNLLTCQVKPNA 64

Query: 263 EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
           E    K  F L         F A++EQ Y  W+  +  +
Sbjct: 65  ED---KKSFDLISH-NRTYHFQAEDEQDYVAWISVLTNS 99

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 37.5 bits (87), Expect = 8e-04
 Identities = 8/46 (17%), Positives = 20/46 (43%)

Query: 9   EDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLS 54
            +    F +I+ +R++  +A    + + WI  +  + +E      S
Sbjct: 64  AEDKKSFDLISHNRTYHFQAEDEQDYVAWISVLTNSKEEALTMAFS 109

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A Length = 168

 Score = 68.3 bits (166), Expect = 4e-14
 Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 17/114 (14%)

Query: 208 SGSQHSGWLHKK------------SGRNWKRYWFVLKDQVMYKYK----ASEDIKALLSI 251
           S +   GWLH +            S R WK+ + VL+   +Y YK     +   +    I
Sbjct: 1   SDAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPI 60

Query: 252 PVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 305
            V    ++    +   K VF+L     +  +F A++      W+K ++E++ L+
Sbjct: 61  SVNACLIDISYSETKRKNVFRLTTSDCE-CLFQAEDRDDMLAWIKTIQESSNLN 113

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens} Length = 124

 Score = 66.8 bits (163), Expect = 5e-14
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 22/113 (19%)

Query: 211 QHSGWLHKK---------SGRNWKRYWFVLKDQVMYKYK------------ASEDIKALL 249
             +G LH+            ++W   W VL+  V+  +K             S+      
Sbjct: 9   DKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEY 68

Query: 250 SIPVLGYELE-ALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
           ++ + G  L  A  ++ + K V +L+ +     +   D+E     W KA+ + 
Sbjct: 69  TVELRGATLSWAPKDKSSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQG 121

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 137

 Score = 67.0 bits (163), Expect = 5e-14
 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 10/100 (10%)

Query: 213 SGWLHKKSG-----RNWKRYWFVLKDQVMYKYKASEDIKA--LLSIPVLGYELEALNEQD 265
              L          + ++++W V K+  +  YK+ ++     +  + + G E+       
Sbjct: 12  KDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGCEVVPDVNVS 71

Query: 266 NFKYVFQL---KHQGQDPLVFGADNEQSYERWMKAMREAT 302
             K+  +L     +G   +     +EQ Y RWM   R A+
Sbjct: 72  GQKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLAS 111

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 66.9 bits (163), Expect = 5e-14
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 13/107 (12%)

Query: 212 HSGWLHKKSG--RNWKRYWFVLKDQVM---YKYKASEDIKALLSIPVLGYELEALNE--- 263
             GWL ++S   R WKR WF L        Y  + ++D +  + I     +++   E   
Sbjct: 10  RGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQD 69

Query: 264 -----QDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 305
                  +   +  +  +    L   A+       W  A+ EA +  
Sbjct: 70  VQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTP 116

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 130

 Score = 66.7 bits (162), Expect = 7e-14
 Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 25/124 (20%)

Query: 204 TANDSGSQHSGWLHKKSG-RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN 262
           ++  SG   + WL  +   ++W + W VLK  V+  YK  ++ + + ++ +   E+    
Sbjct: 2   SSGSSGIVMADWLKIRGTLKSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIERP 61

Query: 263 EQDNFKYVFQLKHQGQDP-----------------------LVFGADNEQSYERWMKAMR 299
            + +  + F+L H  +                         L+  A +E     WM A+ 
Sbjct: 62  SKKD-GFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALE 120

Query: 300 EATT 303
            A  
Sbjct: 121 LALK 124

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1 Length = 117

 Score = 65.5 bits (160), Expect = 1e-13
 Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 14/110 (12%)

Query: 204 TANDSGSQHSGWLHKKSG--RNWKRYWFVLKD---QVMYKYKASEDIKALLSIPV----- 253
           ++  SG  + G L+KK    + WK  WFVL     Q+ Y Y    D +    I +     
Sbjct: 2   SSGSSGRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRY-YDHRMDTECKGVIDLAEVEA 60

Query: 254 --LGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
              G       +  + K  F +K   +    F A +  S ++W+  ++  
Sbjct: 61  VAPGTPTIGAPKTVDEKAFFDVKTTRRV-YNFCAQDVPSAQQWVDRIQSC 109

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1 Length = 117

 Score = 43.2 bits (102), Expect = 8e-06
 Identities = 11/43 (25%), Positives = 18/43 (41%)

Query: 6   PQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKEN 48
           P+T D    F V    R +   A+      +W+D IQ+ +   
Sbjct: 71  PKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLSSG 113

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A Length = 112

 Score = 64.9 bits (158), Expect = 2e-13
 Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 13/105 (12%)

Query: 212 HSGWLHKKSG--RNWKRYWFVL-KDQVMYKYKASEDIKALLSIPVLGYELE--------- 259
            SGWL ++S   + WK+ WF L  D  +  Y           + +    +          
Sbjct: 7   KSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQECRD 66

Query: 260 -ALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303
               +  +   + Q+  +    +   A++      W   ++++ T
Sbjct: 67  TQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSRT 111

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A Length = 125

 Score = 64.9 bits (158), Expect = 2e-13
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 9/107 (8%)

Query: 204 TANDSGSQHSGWLHKKSG--RNWKRYWFVLK-DQVMYKYKASEDIKALLSIPVLGYELEA 260
           + +D      GWLHK+    + W+  +F+LK D     YK           P+  + +  
Sbjct: 2   SMSDVAIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQ 61

Query: 261 ---LNEQDNFKYVFQLKHQGQ---DPLVFGADNEQSYERWMKAMREA 301
              +  +      F ++           F  +  +  E W  A++  
Sbjct: 62  CQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTV 108

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus} Length = 279

 Score = 68.1 bits (165), Expect = 2e-13
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 20/115 (17%)

Query: 211 QHSGWLHKKSG--------------RNWKRYWFVLKDQVMYKYK------ASEDIKALLS 250
           + +G L  K+               R WK YW  LK   ++ Y+         +     +
Sbjct: 12  RKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHA 71

Query: 251 IPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 305
           + V    ++A+ E     +VF L +   D  +F   ++   E W+ A+  A   +
Sbjct: 72  VWVENSIVQAVPEHPKKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACAAA 126

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 64.1 bits (156), Expect = 4e-13
 Identities = 16/104 (15%), Positives = 41/104 (39%), Gaps = 9/104 (8%)

Query: 204 TANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQVM----YKYKASEDIKALLSIPVLGYE 257
           ++  SG    G+L K +     W+  +FVL ++      +  + S + K   ++ + G  
Sbjct: 2   SSGSSGENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAV 61

Query: 258 LEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
           +   +E  +    F +     +     A + +  + W+  ++  
Sbjct: 62  ISPSDEDSH---TFTVNAASGEQYKLRATDAKERQHWVSRLQIC 102

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 12  NNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAIKENEQHL 52
           ++ F+V A S   + LRA  A ER  W+  +Q   + + + +
Sbjct: 69  SHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQHHTEAI 110

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 123

 Score = 64.2 bits (156), Expect = 4e-13
 Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 16/114 (14%)

Query: 208 SGSQHSGWLHKK----------SGRNWKRYWFVLKDQVMYKYK----ASEDIKALLSIPV 253
           SG Q  G L +K          + R+W+  + VL+   +  YK    AS  +     +PV
Sbjct: 6   SGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPV 65

Query: 254 LGYELEALNEQDNFK--YVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 305
                +     D  K  +VF+L  Q     +F A +E     W++ +  A    
Sbjct: 66  SLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIASG 119

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A* Length = 173

 Score = 64.4 bits (156), Expect = 9e-13
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 222 RNWKRYWFVLKDQVMYKYKASEDI--KALLSIPVLGYELEALNEQDNFKYVFQLK---HQ 276
           + +K+YW   KD  +  YK+ E+        + + G E+         K+  +L     +
Sbjct: 64  KGYKQYWCTFKDTSISCYKSKEESSGTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVAE 123

Query: 277 GQDPLVFGADNEQSYERWMKAMREAT 302
           G + +    DNE+ Y  WM A R A+
Sbjct: 124 GMNEIWLRCDNEKQYAHWMAACRLAS 149

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A Length = 125

 Score = 63.1 bits (153), Expect = 1e-12
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 12/101 (11%)

Query: 213 SGWLHKKSGR----NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE-QDNF 267
            GWL   +        K YWFVL  + +  YK  E+ +    + V   +L  + +   + 
Sbjct: 15  KGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSS 74

Query: 268 KYVFQLKHQGQ-------DPLVFGADNEQSYERWMKAMREA 301
           K++F L +  Q         L    + ++  + W  +   A
Sbjct: 75  KHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRA 115

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens} Length = 134

 Score = 60.8 bits (147), Expect = 7e-12
 Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 30/125 (24%)

Query: 207 DSGSQHSGWLHKKSG----RNWKRYWFVLKDQVMYKYKASEDIK---ALLSIPVLGYEL- 258
           +S  +  G+L           W R W VL    +  +   +D K    +  I +      
Sbjct: 2   NSSVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSR 61

Query: 259 ---EALNEQDNFKYVFQLK-------------------HQGQDPLVFGADNEQSYERWMK 296
               A  E    +  F+L                              AD ++  + WM+
Sbjct: 62  QIEPANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQ 121

Query: 297 AMREA 301
            + + 
Sbjct: 122 KLNQV 126

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus} Length = 126

 Score = 60.8 bits (147), Expect = 7e-12
 Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 20/110 (18%)

Query: 213 SGWLHKK---------SGRNWKRYWFVLKDQVMYKYKASED---------IKALLSIPVL 254
            G L +K         +  +W RYW VL    +  Y A                  + ++
Sbjct: 4   EGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIV 63

Query: 255 GYELEALNEQDNFKYVFQLKH-QGQDPLVFGADNEQSYERWMKAMREATT 303
           G+ ++  ++ ++   +FQL +    +   F   +      W K + +A  
Sbjct: 64  GWMVQLPDDPEH-PDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACK 112

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A Length = 103

 Score = 59.8 bits (145), Expect = 8e-12
 Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 7/93 (7%)

Query: 213 SGWLHKKSG--RNWKRYWFVLKDQVMY--KYKASEDIKALLSIPVLGYELEALNEQDNFK 268
            G L+K +     W+  WFVL + ++     +      +  SI +   E++  +  +   
Sbjct: 2   EGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKGSKGSIKMAVCEIKVHSADNTR- 60

Query: 269 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
              +L   G+      A N    +RW+ A+  +
Sbjct: 61  --MELIIPGEQHFYMKAVNAAERQRWLVALGSS 91

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A Length = 103

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 9/43 (20%), Positives = 19/43 (44%)

Query: 3  VCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAI 45
               + D      +I   + F ++A +A ER  W+ A+ ++ 
Sbjct: 50 EIKVHSADNTRMELIIPGEQHFYMKAVNAAERQRWLVALGSSK 92

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A Length = 263

 Score = 62.7 bits (151), Expect = 1e-11
 Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 20/111 (18%)

Query: 211 QHSGWLHKK--------------SGRNWKRYWFVLKDQVMYKYKASEDIKALLS------ 250
           + +GWL  K              + R WK+YW  LK   +  Y+         +      
Sbjct: 12  RKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCA 71

Query: 251 IPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
           +      ++++ E    ++VF L +   D  +F A ++   E W+ A+  A
Sbjct: 72  LFAEDSIVQSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSA 122

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A Length = 106

 Score = 59.2 bits (143), Expect = 2e-11
 Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 16/104 (15%)

Query: 214 GWLHKK----------SGRNWKRYWFVLKDQVMYKYKASEDIKALLSIP------VLGYE 257
           G+L++K          S R+W   + V+ +Q M  YK ++   + +         +    
Sbjct: 3   GFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAI 62

Query: 258 LEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
            E   +    K+VF+L+    +  +F A +++    W++A+  A
Sbjct: 63  CEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106

>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1 Length = 120

 Score = 59.4 bits (143), Expect = 2e-11
 Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 7/72 (9%)

Query: 76  PLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEEC 135
               P      C+ C + F  T R+  C  C K  C  C         +     R+C  C
Sbjct: 11  SFPSPTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTC-------SSQVGNGPRLCLLC 63

Query: 136 YHYLVQEFDDED 147
             +    F  E+
Sbjct: 64  QRFRATAFQREE 75

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens} Length = 94

 Score = 57.8 bits (140), Expect = 3e-11
 Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 8/95 (8%)

Query: 213 SGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDI--KALLSIPVLGYELEALNEQDNFK 268
            G L K +     W+  W VLK+  +  YK+ ++       SI +    +   +  +   
Sbjct: 4   CGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDETEYGCRGSICLSKAVITPHDFDECR- 62

Query: 269 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303
             F +           A +    ++W+ A+ +  T
Sbjct: 63  --FDISVNDSV-WYLRAQDPDHRQQWIDAIEQHKT 94

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens} Length = 94

 Score = 42.8 bits (101), Expect = 8e-06
 Identities = 10/43 (23%), Positives = 18/43 (41%)

Query: 3  VCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAI 45
            +   +     F +      + LRA+  + R +WIDAI+   
Sbjct: 51 AVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHK 93

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 55.8 bits (134), Expect = 6e-09
 Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 7/137 (5%)

Query: 5   LPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQS 64
                     F +  I R +TLR  + NER  W+  I+ A ++           ++    
Sbjct: 321 PTDPSSDEPVFHISHIDRVYTLRTDNINERTAWVQKIKAASEQYIDTEKKQ-REKAYQAR 379

Query: 65  SIPELNLGKVAPLWIPDSRVSMC-----QRCTSVFTVTFRRHHCRACGKVVCGPCSDYLA 119
           S     +G++    I  + +  C            ++  + +  R     +  P  ++  
Sbjct: 380 SQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLN-PKWNFNC 438

Query: 120 PLEYKKFRNFRVCEECY 136
               K      +C   +
Sbjct: 439 QFFIKDLYQDVLCLTLF 455

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens} Length = 164

 Score = 53.2 bits (127), Expect = 7e-09
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 15/105 (14%)

Query: 212 HSGWLHKKSG-------RNWKRYWFVLKDQVMYKYKASEDIKALL-SIP------VLGYE 257
               L K+S         N+K   FVL   ++  Y+   + K     I       V   +
Sbjct: 17  LEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYRKGFIDVSKIKCVEIVK 76

Query: 258 LEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
            +        KY FQ+ H   + L   A + QS + W+K ++E  
Sbjct: 77  NDDGVIPCQNKYPFQVVHD-ANTLYIFAPSPQSRDLWVKKLKEEI 120

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A Length = 385

 Score = 54.2 bits (129), Expect = 2e-08
 Identities = 17/146 (11%), Positives = 53/146 (36%), Gaps = 8/146 (5%)

Query: 162 DNHQVTNMMDIIRSNFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKS- 220
                    ++         T    + +            +   N + ++ +G+L+ ++ 
Sbjct: 230 GTSVQNVRREMDSDIETMQQTIEDLEVASDPLYVPDPDPTKFPVNRNLTRKAGYLNARNK 289

Query: 221 ----GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLK-H 275
                  W R ++  +   +       D+   L++ +    + A++ +D  +Y FQ+   
Sbjct: 290 TGLVSSTWDRQFYFTQGGNLMSQARG-DVAGGLAMDIDNCSVMAVDCEDR-RYCFQITSF 347

Query: 276 QGQDPLVFGADNEQSYERWMKAMREA 301
            G+   +  A++++ +E W+  +   
Sbjct: 348 DGKKSSILQAESKKDHEEWICTINNI 373

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 132

 Score = 50.3 bits (120), Expect = 4e-08
 Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 212 HSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALL---SIPVLGYELEALNEQDNFK 268
               +   +    +  +F+L   V+    AS  +   +    IP+ G  +  L+E +   
Sbjct: 32  SQVVMQHGACEEKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMVVNRLDEIEGSD 91

Query: 269 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
            +F++     + +V   +N Q ++ WM+ +   T
Sbjct: 92  CMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLT 125

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 132

 Score = 39.2 bits (91), Expect = 3e-04
 Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 2/48 (4%)

Query: 1   MKVC-LPQTEDYNNEFSVIA-ISRSFTLRARSANERLEWIDAIQTAIK 46
           M V  L + E  +  F +         +   +  +  EW++ +    K
Sbjct: 79  MVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTK 126

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386

 Score = 51.6 bits (123), Expect = 1e-07
 Identities = 15/101 (14%), Positives = 39/101 (38%), Gaps = 12/101 (11%)

Query: 212 HSGWLHKKSGRN---WKRYWFVLKDQVMYKYKASEDIKALLSIPV----LGYELEALN-- 262
             G++ K   +    +++ WF + D+ +  +K   D  A   + +     GY +      
Sbjct: 271 KEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHGFPP 330

Query: 263 --EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
             +  ++ +   +    +   +F  + E     W+ A ++A
Sbjct: 331 STQGHHWPHGITIVTPDRK-FLFACETESDQREWVAAFQKA 370

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386

 Score = 39.7 bits (92), Expect = 9e-04
 Identities = 8/39 (20%), Positives = 19/39 (48%)

Query: 7   QTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAI 45
           Q   + +  +++   R F     + +++ EW+ A Q A+
Sbjct: 333 QGHHWPHGITIVTPDRKFLFACETESDQREWVAAFQKAV 371

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A Length = 124

 Score = 48.3 bits (114), Expect = 2e-07
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 14/103 (13%)

Query: 214 GWLHK--KSGRNWKRYWFVLKDQVMYKYKASEDIKALLS---------IPVLGYELEALN 262
           G L+      + W R++  + D  +      E      +         + +  Y +    
Sbjct: 16  GELYMWDSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVVKAP 75

Query: 263 EQDNFK-YVFQLKHQGQD--PLVFGADNEQSYERWMKAMREAT 302
           +  N K +VF L+ + Q   P+ F  D  +    W +++RE T
Sbjct: 76  QGKNQKSFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREIT 118

>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} Length = 153

 Score = 48.8 bits (115), Expect = 2e-07
 Identities = 17/119 (14%), Positives = 31/119 (26%), Gaps = 11/119 (9%)

Query: 21  SRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSIPELNLGKVAPLWIP 80
            +   L   +  E       +Q       +       R    +  I + +  +       
Sbjct: 9   GKRLDLSTLTDEEAEHVWAVVQRDFDLRRREE----ERLQGLKGKIQKESSKRELLSDTA 64

Query: 81  DSRVSMCQRCTSVFTVTF-RRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHY 138
               + C RC   + +    R  C  C   VC  CS               +C+ C+  
Sbjct: 65  HLNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAH------PEEQGWLCDPCHLA 117

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A* Length = 264

 Score = 49.9 bits (118), Expect = 3e-07
 Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 204 TANDSGSQHSGWLHKKSGRNWKRYWFVLKDQ-------VMYKYKASEDIKALLSIPVLGY 256
           +   S  +  G+L K   ++  + +FVL+          +  Y+  +  +   S P    
Sbjct: 4   SDGFSDVRKVGYLRKP--KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSI 61

Query: 257 ELE-----ALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
            LE             K++  L  +  +     AD+E   + W +A+ + 
Sbjct: 62  PLESCFNINKRADSKNKHLVALYTR-DEHFAIAADSEAEQDSWYQALLQL 110

>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B* Length = 113

 Score = 47.1 bits (112), Expect = 4e-07
 Identities = 6/43 (13%), Positives = 18/43 (41%)

Query: 5   LPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKE 47
           +       + F ++    S   +A +A  + EW++ ++   + 
Sbjct: 66  VKDNPPMKDMFKLLMFPESRIFQAENAKIKREWLEVLEETKRA 108

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens} Length = 256

 Score = 49.4 bits (117), Expect = 4e-07
 Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 15/117 (12%)

Query: 200 LIEVTANDSGSQHSGWLHKKSGR--NWKRYWFVLKDQVMY-----KYKASEDIKALLSIP 252
           L     + S  +  G+LH K     +WK+ +  L+   +Y        A   ++ L  + 
Sbjct: 122 LQNFLNSSSSPEIQGFLHVKELGKKSWKKLYVCLRRSGLYCSTKGTSAAPRHLQLLADLE 181

Query: 253 VLG-YELEAL--NEQDNFKYVFQLKHQG-----QDPLVFGADNEQSYERWMKAMREA 301
               + L A          +   +K        ++  +  A++EQ+   WM A R  
Sbjct: 182 DSNIFSLIAGRKQYNAPTDHGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAFRLL 238

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens} Length = 128

 Score = 45.6 bits (107), Expect = 2e-06
 Identities = 16/116 (13%), Positives = 32/116 (27%), Gaps = 27/116 (23%)

Query: 213 SGWLHKKSGR----NWKRYWFVLKDQVMYKYKASED-----------------IKALLSI 251
             +L K+SG      WK+ +  L       Y  S +                 +K     
Sbjct: 7   QSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKR 66

Query: 252 PVLGYELEA------LNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
           P                + +   + F +         F A + +  + W++A+   
Sbjct: 67  PPRAISAFGPSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQ 122

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens} Length = 128

 Score = 38.7 bits (89), Expect = 4e-04
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 8   TEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAI 45
            E+      V +  +++   A S  ER  W+ AI++ I
Sbjct: 86  EEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQI 123

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 2e-06
 Identities = 42/294 (14%), Positives = 92/294 (31%), Gaps = 83/294 (28%)

Query: 46  KENEQHLLSFLNRRSLTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVT---FRRHH 102
            E +  LL +L+ R      +P   L    P  +     S+          T   ++  +
Sbjct: 301 DEVKSLLLKYLDCRP---QDLPREVL-TTNPRRL-----SIIAESIRDGLATWDNWKHVN 351

Query: 103 CRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQEFDDEDSNMFERVKAV--ANV 160
           C     ++     + L P EY+K          +  L   F    +++   + ++   +V
Sbjct: 352 CDKLTTII-ESSLNVLEPAEYRK---------MFDRLSV-FP-PSAHIPTILLSLIWFDV 399

Query: 161 EDNHQVTNMMDIIRSNFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKS 220
             +    ++M ++     +     ++   K+    +P   +E+            LH+  
Sbjct: 400 IKS----DVMVVVNK-LHKYSLVEKQ--PKESTISIPSIYLELKVKLENEYA---LHRS- 448

Query: 221 GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPV-------LGYELEALN---EQDNFKYV 270
                     + D   Y    + D   L+   +       +G+ L+ +        F+ V
Sbjct: 449 ----------IVDH--YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 271 FQ--------LKHQGQDPLVFGA----------------DNEQSYERWMKAMRE 300
           F         ++H        G+                DN+  YER + A+ +
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A* Length = 169

 Score = 44.9 bits (105), Expect = 6e-06
 Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 38/127 (29%)

Query: 213 SGWLHKKSG-------RNWKRYWFVLKDQVMYKYKASED----IKALLSIPV-------- 253
                K+S         N+K+  F+L    +  Y+   +         SI V        
Sbjct: 6   ESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVET 65

Query: 254 ------------------LGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWM 295
                                E+E ++  + F Y FQ+ +  + PL   +  E+  +RW+
Sbjct: 66  VVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVY-DEGPLYVFSPTEELRKRWI 124

Query: 296 KAMREAT 302
             ++   
Sbjct: 125 HQLKNVI 131

>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A Length = 353

 Score = 43.0 bits (101), Expect = 7e-05
 Identities = 11/61 (18%), Positives = 23/61 (37%)

Query: 5   LPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQS 64
             + +    E    A    + ++A +   +  W++AI+  +    Q        R+L QS
Sbjct: 284 NVKGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTSQLQACREASQHRALEQS 343

Query: 65  S 65
            
Sbjct: 344 H 344

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A Length = 354

 Score = 42.6 bits (100), Expect = 8e-05
 Identities = 17/169 (10%), Positives = 53/169 (31%), Gaps = 16/169 (9%)

Query: 150 MFERVKAVANVEDNHQVTNMMDIIRSNFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSG 209
               V++    +   +      +  S  +      + K     +    Q+ I+       
Sbjct: 182 ALLNVQSGME-KICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDI 240

Query: 210 SQHSGWLHK-----KSGRNWKRYWFVLKDQVMY------KYKASEDIKALLS----IPVL 254
            Q            + G   +R+ F+    ++       + +      A         + 
Sbjct: 241 GQCCNEFIMEGTLTRVGAKHERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMR 300

Query: 255 GYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303
             ++   ++ + +K+ F++  + ++ ++F A + +    WM A+     
Sbjct: 301 KVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQY 349

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1 Length = 402

 Score = 42.5 bits (100), Expect = 9e-05
 Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 20/96 (20%)

Query: 9   EDYNNEFSVIAISR--SFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSI 66
               N F +            A+   E++ W+ A +   K         +         I
Sbjct: 324 VSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKM--------VQEDEKIGFEI 375

Query: 67  PELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHH 102
            E              + +M  R  S   VT R+ H
Sbjct: 376 SENQ----------KRQAAMTVRKASKQKVTQRKWH 401

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus} Length = 117

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 15/113 (13%), Positives = 44/113 (38%), Gaps = 21/113 (18%)

Query: 210 SQHSGWLH--KKSGR---NWKRYWFVLKDQVMYKYKASEDIKALLSIPVL----GYELEA 260
           S+  GWL    ++      W + + ++  + +  Y + +D +      VL     + +  
Sbjct: 1   SRLEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRP 60

Query: 261 LNEQD-------NFKYVFQLKHQGQDP-----LVFGADNEQSYERWMKAMREA 301
           + + D           +FQ+ +  +       L+  A++ +  ++W+  + + 
Sbjct: 61  VTQTDVYRADAKEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKK 113

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 9/105 (8%)

Query: 205 ANDSGSQHSGWLHKKSG--RNWKRYWFVLK-DQVMYKYKASEDIKALLSIPVLGYELEA- 260
            +D      GWLHK+    + W+  +F+LK D     YK           P+  + +   
Sbjct: 1   GSDVAIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQC 60

Query: 261 --LNEQDNFKYVF---QLKHQGQDPLVFGADNEQSYERWMKAMRE 300
             +  +      F    L+        F  +  +  E W  A++ 
Sbjct: 61  QLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQT 105

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	305
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	99.94
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	99.88
1wi1_A	126	Calcium-dependent activator protein for secretion,	99.88
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	99.87
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	99.86
1z2q_A	84	LM5-1; membrane protein, FYVE domain, zinc-finger;	99.84
1x4u_A	84	Zinc finger, FYVE domain containing 27 isoform B;	99.84
3t7l_A	90	Zinc finger FYVE domain-containing protein 16; str	99.84
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	99.83
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.83
3cxb_B	112	Pleckstrin homology domain-containing family M mem	99.83
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	99.82
2yw8_A	82	RUN and FYVE domain-containing protein 1; structur	99.82
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	99.82
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	99.82
1joc_A	125	EEA1, early endosomal autoantigen 1; FYVE domain,	99.81
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	99.81
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	99.81
2yry_A	122	Pleckstrin homology domain-containing family A mem	99.8
1vfy_A	73	Phosphatidylinositol-3-phosphate binding FYVE doma	99.8
2dkp_A	128	Pleckstrin homology domain-containing family A mem	99.8
2d9y_A	117	Pleckstrin homology domain-containing protein fami	99.8
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	99.8
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	99.8
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.8
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	99.79
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	99.79
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	99.79
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	99.78
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	99.78
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	99.78
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	99.78
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	99.78
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	99.77
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.77
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	99.77
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	99.77
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	99.77
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	99.77
2d9v_A	130	Pleckstrin homology domain-containing protein fami	99.77
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	99.77
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	99.77
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	99.76
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	99.76
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	99.75
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	99.75
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	99.75
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	99.75
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	99.74
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	99.74
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	99.74
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	99.74
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	99.74
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	99.74
1wfk_A	88	Zinc finger, FYVE domain containing 19; riken stru	99.74
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	99.73
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	99.73
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	99.72
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	99.72
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	99.72
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	99.71
3tca_A	291	Amyloid beta A4 precursor protein-binding family 1	99.7
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	99.7
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	99.68
1y02_A	120	CARP2, FYVE-ring finger protein sakura; zinc-bindi	99.67
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	99.66
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	99.66
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	99.65
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	99.64
4bbk_A	165	Kindlin-1, fermitin family homolog 1; PH domain, c	99.63
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	99.62
2fjl_A	150	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.58
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	99.57
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.53
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	99.49
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	99.48
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	99.35
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	99.33
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	99.31
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.23
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	99.19
1w1g_A	151	HPDK1, 3-phosphoinositide dependent protein kinase	99.12
2coa_A	125	Protein kinase C, D2 type; protein kinase D2, PH d	98.92
2d9z_A	129	Protein kinase C, NU type; PH domain, structural g	98.83
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	98.54
1v5m_A	136	SH2 and PH domain-containing adapter protein APS;	98.42
1zc3_B	113	Exocyst complex protein EXO84; exocytosis, small G	98.4
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	98.36
1v61_A	132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	98.35
3qwm_A	140	Iqsec1, IQ motif and SEC7 domain-containing protei	98.33
3ml4_A	224	Protein DOK-7; tyrosine phosphorylation, adapter p	98.32
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	98.32
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	98.27
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	98.2
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	98.2
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	98.16
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	98.14
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	98.12
2d9v_A	130	Pleckstrin homology domain-containing protein fami	98.11
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	98.11
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	98.1
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	98.09
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	98.06
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	98.05
3cxb_B	112	Pleckstrin homology domain-containing family M mem	98.04
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	98.03
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	98.02
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	98.02
1zc3_B	113	Exocyst complex protein EXO84; exocytosis, small G	98.02
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	98.01
1wi1_A	126	Calcium-dependent activator protein for secretion,	98.01
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	97.99
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	97.98
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	97.96
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	97.93
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	97.93
1v61_A	132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	97.93
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	97.92
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	97.9
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	97.9
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	97.89
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	97.89
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	97.88
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	97.87
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	97.85
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	97.83
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	97.81
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	97.78
2yry_A	122	Pleckstrin homology domain-containing family A mem	97.77
2d9y_A	117	Pleckstrin homology domain-containing protein fami	97.76
2dkp_A	128	Pleckstrin homology domain-containing family A mem	97.75
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	97.75
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	97.73
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	97.69
3qwm_A	140	Iqsec1, IQ motif and SEC7 domain-containing protei	97.69
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	97.68
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	97.68
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	97.64
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	97.62
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	97.62
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	97.61
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	97.52
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	97.44
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	97.37
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	97.37
2lg1_A	185	A-kinase anchor protein 13; metal binding protein;	97.36
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	97.34
1mai_A	131	Phospholipase C delta-1; pleckstrin, inositol tris	97.29
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	97.1
3t06_A	418	PDZ-rhogef, RHO guanine nucleotide exchange factor	97.08
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	97.06
1zbd_B	134	Rabphilin-3A; G protein, effector, RABCDR, synapti	97.06
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	97.05
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	97.05
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	97.02
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	96.91
1xcg_A	368	PDZ-rhogef, RHO guanine nucleotide exchange factor	96.88
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	96.74
3p6a_A	377	RHO guanine nucleotide exchange factor 1; regulati	96.67
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	96.63
1txd_A	385	RHO guanine nucleotide exchange factor 12; helical	96.61
2z0q_A	346	XPLN, RHO guanine nucleotide exchange factor 3; DH	96.51
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	96.51
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	96.47
1kz7_A	353	Guanine nucleotide exchange factor DBS; guanine nu	96.47
2zet_C	153	Melanophilin; complex, GTP-binding protein, GTPase	96.46
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	96.45
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	96.35
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	96.2
1w1g_A	151	HPDK1, 3-phosphoinositide dependent protein kinase	96.03
2rgn_B	354	RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p	96.01
1txd_A	385	RHO guanine nucleotide exchange factor 12; helical	95.97
1nty_A	311	Triple functional domain protein; DBL, pleckstrin,	95.93
1v5m_A	136	SH2 and PH domain-containing adapter protein APS;	95.78
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	95.72
2rgn_B	354	RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p	95.62
3tca_A	291	Amyloid beta A4 precursor protein-binding family 1	95.61
1kz7_A	353	Guanine nucleotide exchange factor DBS; guanine nu	95.57
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	95.43
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	95.43
1foe_A	377	T-lymphoma invasion and metastasis inducing protei	94.57
2owa_A	138	Arfgap-like finger domain containing protein; zinc	94.34
2olm_A	140	Nucleoporin-like protein RIP; arfgap, GTPase-activ	94.3
2iqj_A	134	Stromal membrane-associated protein 1-like; zinc,	94.25
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	94.21
2crw_A	149	ARF GAP 3, ADP-ribosylation factor GTPase-activati	93.9
3sub_A	163	ADP-ribosylation factor GTPase-activating protein;	93.77
2crr_A	141	Stromal membrane-associated protein SMAP1B; arfgap	93.7
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	93.51
2csz_A	76	Synaptotagmin-like protein 4; exophilin 2, granuph	93.06
3dwd_A	147	ADP-ribosylation factor GTPase-activating protein;	92.93
2p57_A	144	GTPase-activating protein ZNF289; zinc finger, GAP	92.88
2d9z_A	129	Protein kinase C, NU type; PH domain, structural g	92.73
2adz_A	178	Alpha-1-syntrophin; protein binding; NMR {Mus musc	91.79
1mai_A	131	Phospholipase C delta-1; pleckstrin, inositol tris	90.46
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	90.05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	89.75
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	89.37
1wff_A	85	Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc	89.14
2coa_A	125	Protein kinase C, D2 type; protein kinase D2, PH d	88.74
1wfh_A	64	Zinc finger (AN1-like) family protein; ZF-AN1 doma	88.66
1wfl_A	74	Zinc finger protein 216; ZF-AN1 domain, zinc bindi	88.51
1wfp_A	74	Zinc finger (AN1-like) family protein; ZF-AN1 doma	87.45
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	86.95
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	86.43
1fho_A	119	UNC-89; pleckstrin homology domain, electrostatics	86.34
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	84.66
1wg2_A	64	Zinc finger (AN1-like) family protein; riken struc	84.35
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	84.11
2a20_A	62	Regulating synaptic membrane exocytosis protein 2;	83.65
3a98_B	203	Engulfment and cell motility protein 1; protein-pr	82.94
1fho_A	119	UNC-89; pleckstrin homology domain, electrostatics	82.54
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	82.4

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}

Probab=99.94  E-value=9.1e-28  Score=226.36  Aligned_cols=139  Identities=35%  Similarity=0.637  Sum_probs=39.1

Q ss_pred             CeeecCCCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHHhc--ccccccccccccCCCcccCcCCCCCee
Q psy2207           1 MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQH--LLSFLNRRSLTQSSIPELNLGKVAPLW   78 (305)
Q Consensus         1 m~v~~~~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~w   78 (305)
                      |.|..+++++.+|.|.|.++.++|.|+|.|++||++|+++|+++|.+....  ..+|...  .+.++......+..+|.|
T Consensus       292 l~v~~~~~~~~~~~f~i~~~~~~~~l~a~s~~ek~~W~~~i~~ai~e~~~~~~~~~f~~~--~e~~~~~~~~~~~~~p~w  369 (434)
T 3mpx_A          292 MKVSRPVMEKVPYALKIETSESCLMLSASSCAERDEWYGCLSRALPEDYKAQALAAFHHS--VEIRERLGVSLGERPPTL  369 (434)
T ss_dssp             ---CCCCCTTSCSEEEEECSSCEEEEECSSHHHHHHHHHHHHHC------------------------------------
T ss_pred             cEEEecCCCCCCeeEEEecCCeEEEEecCCHHHHHHHHHHHHHHHHHHHhhhcccccCCc--cchhhcccCccccCCCcC
Confidence            456677778899999999999999999999999999999999999875332  2233221  122233455677889999


Q ss_pred             eecCCCcccccccccccccccccccccccceeccCccCCeecccCCCCccccccHhhHHHHHh
Q psy2207          79 IPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQ  141 (305)
Q Consensus        79 ~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~~  141 (305)
                      +||..+..|+.|+.+|+++.|+||||+||.+||..||++++++++.+.+++|||+.||..+..
T Consensus       370 ~~~~~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l~~  432 (434)
T 3mpx_A          370 VPVTHVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGELKK  432 (434)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             CCcccCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHHHh
Confidence            999999999999999999999999999999999999999999998888999999999998754

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.88  E-value=1.5e-22  Score=154.83  Aligned_cols=97  Identities=22%  Similarity=0.363  Sum_probs=83.6

Q ss_pred             CCCCCceeeeeeecc-CCCceEEEEEEEC---CEEEEEccCccCccceEEEecCeEEEEc--cccCCcceeEEEEeCCce
Q psy2207         206 NDSGSQHSGWLHKKS-GRNWKRYWFVLKD---QVMYKYKASEDIKALLSIPVLGYELEAL--NEQDNFKYVFQLKHQGQD  279 (305)
Q Consensus       206 ~~~~~~~~G~L~~~~-~~~wkrrw~vL~~---~~L~~y~~~~d~~p~~~i~L~~~~v~~~--~~~~~~~~~F~l~~~~~~  279 (305)
                      ..++++++|||++++ .+.|++|||||++   .+||||++++|..|.+.|+|.|+.|...  .+...++|+|+|.+++ +
T Consensus         4 ~~~~~~~~G~L~k~~~~~~WkkrWfVL~~~~~~~Ly~Yk~~~d~~p~g~I~L~g~~V~~~~~~~~~~~~~~Fki~~~~-~   82 (112)
T 2coc_A            4 GSSGSLLCGPLRLSESGETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAK-Q   82 (112)
T ss_dssp             CCSSSSSEEEEEEESSSSCEEEEEEECCTTCTTCEEEECCTTCSSSCSEECGGGCEEECCCSSSCCSSSEEEEEEETT-E
T ss_pred             ccCCceEEEEEEecCCCCCceEEEEEEECCCccEEEEECCCCccCcceEEEcCCCEEEecCcccccCCCCEEEEecCC-e
Confidence            345668999999987 7899999999997   4899999999999999999999999852  2233467999999654 6


Q ss_pred             eEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         280 PLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       280 ~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      +|+|+|+|++++++||++|+.|+.
T Consensus        83 ~y~f~A~s~e~~~~Wl~al~~A~~  106 (112)
T 2coc_A           83 SWYLSASSAELQQQWLETLSTAAH  106 (112)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHHS
T ss_pred             EEEEEcCCHHHHHHHHHHHHHHhc
Confidence            799999999999999999999874

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.88  E-value=2.5e-22  Score=154.69  Aligned_cols=97  Identities=26%  Similarity=0.480  Sum_probs=84.5

Q ss_pred             CCCCceeeeeeecc---CCCceEEEEEEECCEEEEEc----cCccCccceEEEecCeEEEEc---cccCCcceeEEEEeC
Q psy2207         207 DSGSQHSGWLHKKS---GRNWKRYWFVLKDQVMYKYK----ASEDIKALLSIPVLGYELEAL---NEQDNFKYVFQLKHQ  276 (305)
Q Consensus       207 ~~~~~~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~----~~~d~~p~~~i~L~~~~v~~~---~~~~~~~~~F~l~~~  276 (305)
                      +++..++|||++++   .+.|+||||||++..||||+    .+.+..|+|.|+|.+++|...   ++...++|.|+++++
T Consensus         5 p~n~~~~G~L~KqG~~~~K~WKrRwFVL~~~~LyYfk~~~~~~~~~~p~G~I~L~g~tV~~~~~~~~~~~~k~~F~~v~~   84 (126)
T 1wi1_A            5 SSGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKE   84 (126)
T ss_dssp             CCCEEEEEEEEEECSSSCCSCEEEEEEEEEEETTEEEEEECCSSSSCCSEEEECSSCEEEECCCCSSCCSCSSEEEEECS
T ss_pred             CCCCceeEEEEEeCCCcccccceEEEEEeCCEEEEEEcccccccCCCCceEEECCCcEEEEecCCcccccCceEEEEecC
Confidence            44568999999997   57999999999999999999    888899999999999999843   223467799999977


Q ss_pred             CceeEEEEcCCHHHHHHHHHHHHHHHcC
Q psy2207         277 GQDPLVFGADNEQSYERWMKAMREATTL  304 (305)
Q Consensus       277 ~~~~~~f~a~s~e~~~~Wi~al~~a~~~  304 (305)
                      +. .|+|+|+|+++++.||.||..|+..
T Consensus        85 ~~-ty~~~Adseee~~~WikAi~~A~~~  111 (126)
T 1wi1_A           85 GD-TVIFASDDEQDRILWVQAMYRATGQ  111 (126)
T ss_dssp             SC-EEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             Cc-eEEEEcCCHHHHHHHHHHHHHHhcc
Confidence            65 5999999999999999999999864

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.87  E-value=4.1e-21  Score=146.36  Aligned_cols=98  Identities=42%  Similarity=0.779  Sum_probs=88.1

Q ss_pred             CCCCCceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEE
Q psy2207         206 NDSGSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVF  283 (305)
Q Consensus       206 ~~~~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f  283 (305)
                      .+++++++|||++++  .+.|++|||||+++.|+||+++.+..|.+.|+|.++.+....+...++++|+|.+++.++|+|
T Consensus         4 ~~~~~~~~G~L~K~~~~~~~Wk~RwfvL~~~~L~yyk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~   83 (109)
T 1wgq_A            4 GSSGSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVF   83 (109)
T ss_dssp             CCCSCSCEEEEEEESSTTSCCEEEEEEEETTEEEEESCTTCSSCSEEEECSSEEEEECCCSSCSSSEEEEEETTEEEEEE
T ss_pred             CCCCCeEEEEEEeCCCCCCCceeEEEEEeCCEEEEECCCCcCccCceEECCCCEEEECCCCCCCCcEEEEEeCCCeEEEE
Confidence            345678999999998  689999999999999999999999999999999999998766555567999999888888999


Q ss_pred             EcCCHHHHHHHHHHHHHHHc
Q psy2207         284 GADNEQSYERWMKAMREATT  303 (305)
Q Consensus       284 ~a~s~e~~~~Wi~al~~a~~  303 (305)
                      +|+|+++++.||.+|+.|+.
T Consensus        84 ~a~s~~e~~~Wi~al~~a~~  103 (109)
T 1wgq_A           84 KADDAHSTQRWIDAFQEGTV  103 (109)
T ss_dssp             ECSSHHHHHHHHHHHHHHHS
T ss_pred             ECCCHHHHHHHHHHHHHHhc
Confidence            99999999999999999874

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.86  E-value=2.6e-21  Score=152.15  Aligned_cols=96  Identities=24%  Similarity=0.404  Sum_probs=83.3

Q ss_pred             CCCceeeeeeecc-CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCCc--------
Q psy2207         208 SGSQHSGWLHKKS-GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQ--------  278 (305)
Q Consensus       208 ~~~~~~G~L~~~~-~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~--------  278 (305)
                      ..++++|||++++ .+.|++|||||+++.|+||+++.+..|.+.|+|.++.|...+ ....+|+|+|.++..        
T Consensus         6 ~~v~k~GwL~K~g~~k~WkrRWfVLk~~~L~yyk~~~~~~p~G~I~L~~~~v~~~~-~~~~~~~F~i~~~~~~~i~~~~g   84 (130)
T 1v88_A            6 SGIVMADWLKIRGTLKSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIERP-SKKDGFCFKLFHPLEQSIWAVKG   84 (130)
T ss_dssp             SSCCEEEEEEECCSSSSCEEEEEEEETTEEEEESCSSSCCCCEEEECSSCEECCCC-TTTSSCEEEEECTTCCCCSCSSC
T ss_pred             CceEEEeEEEEeCCCCCceEEEEEEECCEEEEECCCCCCCceEEEEcCCCEEEECC-CCCCCeEEEEEcCCccccccccC
Confidence            4468999999998 889999999999999999999999999999999999985433 234569999997543        


Q ss_pred             ---------------eeEEEEcCCHHHHHHHHHHHHHHHcC
Q psy2207         279 ---------------DPLVFGADNEQSYERWMKAMREATTL  304 (305)
Q Consensus       279 ---------------~~~~f~a~s~e~~~~Wi~al~~a~~~  304 (305)
                                     ++|+|+|+|++++++||+||+.|+..
T Consensus        85 ~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~~  125 (130)
T 1v88_A           85 PKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKS  125 (130)
T ss_dssp             TTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTT
T ss_pred             CcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence                           34999999999999999999999875

>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}

Probab=99.84  E-value=1e-21  Score=142.07  Aligned_cols=71  Identities=39%  Similarity=0.823  Sum_probs=66.0

Q ss_pred             CCCCCeeeecCCCcccccccccccccccccccccccceeccCccCCeecccCCC-CccccccHhhHHHHHhc
Q psy2207          72 GKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKK-FRNFRVCEECYHYLVQE  142 (305)
Q Consensus        72 ~~~~p~w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~-~~~~rvC~~C~~~~~~~  142 (305)
                      ....|.|+||+++..|+.|..+|++++||||||+||.+||+.||.++++|+..+ .+++|||+.||..+...
T Consensus         9 ~~~~~~W~pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~~   80 (84)
T 1z2q_A            9 KQSKGYWQEDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLALRSS   80 (84)
T ss_dssp             TCCCSCCCCTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHHHTS
T ss_pred             cCCCCccccCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHHhhc
Confidence            355789999999999999999999999999999999999999999999998776 79999999999998764

>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=1.3e-21  Score=141.65  Aligned_cols=70  Identities=23%  Similarity=0.541  Sum_probs=64.0

Q ss_pred             CCCeeeecCCCcccccccccccccccccccccccceeccCccCCeecccCCC-------CccccccHhhHHHHHhcc
Q psy2207          74 VAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKK-------FRNFRVCEECYHYLVQEF  143 (305)
Q Consensus        74 ~~p~w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~-------~~~~rvC~~C~~~~~~~~  143 (305)
                      ..+.|+||+++..|+.|..+|++++||||||+||.|||+.|+.++++|+..+       .+++|||+.||..|....
T Consensus         4 ~~~~W~pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~l~~~g~~~p~~~~~~~RVC~~C~~~l~~~~   80 (84)
T 1x4u_A            4 GSSGRYPTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTLSKSG   80 (84)
T ss_dssp             CCCCSCSCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCEEECSTTTSCCCSSCSSCCEEECHHHHHHHHSCC
T ss_pred             CCCccccCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCCceecccccccCccccCCccEECHHHHHHHhccC
Confidence            4689999999999999999999999999999999999999999999998654       378999999999998653

>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}

Probab=99.84  E-value=1e-21  Score=143.66  Aligned_cols=74  Identities=46%  Similarity=0.959  Sum_probs=68.3

Q ss_pred             ccCcCCCCCeeeecCCCcccccccccccccccccccccccceeccCccCCeecccCCCCccccccHhhHHHHHhc
Q psy2207          68 ELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQE  142 (305)
Q Consensus        68 ~~~~~~~~p~w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~~~  142 (305)
                      ++.++..+|.|++|+++..|+.|..+|++++|+||||+||.+||+.|+.++++|++. .+++|||+.||..+...
T Consensus         4 ~~~l~~~~p~W~~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~-~~~~RVC~~C~~~l~~~   77 (90)
T 3t7l_A            4 GLVLGQKQPTWVPDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKCKLQYL-EKEARVCVVCYETISKA   77 (90)
T ss_dssp             -CCTTTSCCCCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEEEETTT-TEEEEECHHHHHHHHHH
T ss_pred             hcccCCCCCcCcccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCeeecCCC-CCCCeECHHHHHHHHHH
Confidence            456788899999999999999999999999999999999999999999999999875 58999999999999865

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A

Probab=99.83  E-value=5.1e-20  Score=142.56  Aligned_cols=96  Identities=20%  Similarity=0.406  Sum_probs=80.9

Q ss_pred             Cceeeeeeecc--CCCceEEEEEEECCEEEEEccCc---cCccceEEEecCeEEEEccccCC--------cceeEEEEeC
Q psy2207         210 SQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASE---DIKALLSIPVLGYELEALNEQDN--------FKYVFQLKHQ  276 (305)
Q Consensus       210 ~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~---d~~p~~~i~L~~~~v~~~~~~~~--------~~~~F~l~~~  276 (305)
                      ++++|||++++  .+.|++|||||+++.|+||+++.   +..|.+.|+|.+|.|......+.        ..+.|.|...
T Consensus         6 ~~k~G~L~Kk~~~~k~W~~rwfVL~~~~L~yyK~~~~~~d~~P~gsI~L~~c~v~~~~~~~~~~~~~~~~~~~~F~i~~~   85 (120)
T 4a6h_A            6 EIKSGFLERRSKFLKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTVTEHSRKNSTSSPNSTGSDAKFVLHAK   85 (120)
T ss_dssp             CSEEEEEEEEETTTTEEEEEEEEECSSEEEEESSCCTTTCCSCSEEEEGGGEEEEEECCCCC---------CCEEEEEES
T ss_pred             ccEEEEEEEcCCCCCCCccEEEEEeCCEEEEEcCCCcCcCCCceEEEECCCCEEEEcccccccccccccCCCcEEEEEeC
Confidence            58999999998  78999999999999999999875   66799999999999987543332        5678888865


Q ss_pred             C------ceeEEEEcCCHHHHHHHHHHHHHHHcCC
Q psy2207         277 G------QDPLVFGADNEQSYERWMKAMREATTLS  305 (305)
Q Consensus       277 ~------~~~~~f~a~s~e~~~~Wi~al~~a~~~s  305 (305)
                      .      .+.|+|.|+|.+++++||++|+.++.+|
T Consensus        86 ~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~~~~  120 (120)
T 4a6h_A           86 QNGIIRRGHNWVFKADSYESMMSWFDNLKILTSTS  120 (120)
T ss_dssp             SSSSSCTTCEEEEECSSHHHHHHHHHHHHHHCC--
T ss_pred             CCCcccCceEEEEEcCCHHHHHHHHHHHHHHhccC
Confidence            4      3589999999999999999999998875

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.83  E-value=2.3e-19  Score=165.83  Aligned_cols=94  Identities=16%  Similarity=0.358  Sum_probs=77.9

Q ss_pred             CCceeeeeeecc--C-CCceEEEEEEECCEEEEEccCccCccceEEEe----cCeEEEEcccc-C-C--cceeEEEEeCC
Q psy2207         209 GSQHSGWLHKKS--G-RNWKRYWFVLKDQVMYKYKASEDIKALLSIPV----LGYELEALNEQ-D-N--FKYVFQLKHQG  277 (305)
Q Consensus       209 ~~~~~G~L~~~~--~-~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L----~~~~v~~~~~~-~-~--~~~~F~l~~~~  277 (305)
                      +++++|||+|++  . +.|++|||||+++.|+||+++.+..|.|.|+|    .++.|...... . .  .+++|+|.++ 
T Consensus       268 ~~~k~G~L~K~g~~~~k~WKkRwFVL~~~~L~YYk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~~F~I~t~-  346 (386)
T 3lju_X          268 NYLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHGFPPSTQGHHWPHGITIVTP-  346 (386)
T ss_dssp             CCSEEEEEEECCTTSCSCCEEEEEEEETTEEEEESSTTCSBCSEEEECCCGGGTCEEEESCCTTCCSCCSCEEEEEECS-
T ss_pred             ccceeeeEEEECCCCCCCCcccEEEEECCEEEEEecCCCcccceEEEeecceeeeeecccCCccccccCCCcEEEEEeC-
Confidence            346899999998  4 89999999999999999999999999999999    34556532221 1 1  2699999865 


Q ss_pred             ceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         278 QDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       278 ~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      .++|+|+|+|++++++||.||+.++.
T Consensus       347 ~rty~l~A~s~~e~~~Wi~aL~~~i~  372 (386)
T 3lju_X          347 DRKFLFACETESDQREWVAAFQKAVD  372 (386)
T ss_dssp             SCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            57899999999999999999998864

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B

Probab=99.83  E-value=8e-20  Score=140.07  Aligned_cols=92  Identities=25%  Similarity=0.465  Sum_probs=79.2

Q ss_pred             eeeeeeecc------CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEE--EccccCCcceeEEEEeCCceeEEE
Q psy2207         212 HSGWLHKKS------GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELE--ALNEQDNFKYVFQLKHQGQDPLVF  283 (305)
Q Consensus       212 ~~G~L~~~~------~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~--~~~~~~~~~~~F~l~~~~~~~~~f  283 (305)
                      ++|||++++      .+.|+++||||+++.|+||+++.+..|.+.|+|.++.+.  .......++|+|+|.+++.+.|+|
T Consensus         2 keG~L~kK~g~~~~~~k~Wk~rwfvL~~~~L~~yk~~~~~~p~~~i~l~~~~~~~~~~~~~~~r~~~F~l~~~~~~~y~f   81 (112)
T 3cxb_B            2 KEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPLLSVNMGGEQCGGCRRANTTDRPHAFQVILSDRPCLEL   81 (112)
T ss_dssp             EEEEEEECCSCCCSSCCCCEEEEEEEETTEEEEESSSSCCSCSEEEETTC-CEEEEEECCCSSCTTEEEEEETTSCCEEE
T ss_pred             ceEEEEEeCCCCCCCCCCceEEEEEEECCEEEEECCCCCCCccceEEecCCEEEeeeccCCCCCCeEEEEEcCCCCEEEE
Confidence            689998763      578999999999999999999999999999999877554  333445678999999887888999


Q ss_pred             EcCCHHHHHHHHHHHHHHHc
Q psy2207         284 GADNEQSYERWMKAMREATT  303 (305)
Q Consensus       284 ~a~s~e~~~~Wi~al~~a~~  303 (305)
                      +|+|+++|++||.+|+.|+.
T Consensus        82 ~A~s~ee~~~Wi~ai~~~~~  101 (112)
T 3cxb_B           82 SAESEAEMAEWMQHLCQAVS  101 (112)
T ss_dssp             ECSSHHHHHHHHHHHHHHHT
T ss_pred             EcCCHHHHHHHHHHHHHHhh
Confidence            99999999999999998764

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.82  E-value=1.8e-19  Score=138.02  Aligned_cols=96  Identities=24%  Similarity=0.403  Sum_probs=84.9

Q ss_pred             CCCceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEE-ccccCCcceeEEEEeCCceeEEEE
Q psy2207         208 SGSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEA-LNEQDNFKYVFQLKHQGQDPLVFG  284 (305)
Q Consensus       208 ~~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~-~~~~~~~~~~F~l~~~~~~~~~f~  284 (305)
                      +.++++|||++++  .+.|++|||||.++.|+||+++.+..|.+.|+|.++.+.. ..+...++++|+|...+.+.|+|.
T Consensus         3 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~~~~~~~~~~~~~~F~i~~~~~r~~~l~   82 (113)
T 1pls_A            3 PKRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQQDHFFQ   82 (113)
T ss_dssp             CCCSEEEEEEEESSSSSCCEEEEEEEETTEEEEESSTTCSSCSEEEESSSCCEESSCCSSCCSSSEEEEEETTTEEEEEE
T ss_pred             CCCcEEEEEEEeCCCCCCceEEEEEEECCEEEEEeCCCCCCcceEEEcCCCEEEEecCCCCCCccEEEEEcCCCCEEEEE
Confidence            3568999999998  6899999999999999999999999999999999988864 334456779999998877899999


Q ss_pred             cCCHHHHHHHHHHHHHHHc
Q psy2207         285 ADNEQSYERWMKAMREATT  303 (305)
Q Consensus       285 a~s~e~~~~Wi~al~~a~~  303 (305)
                      |+|++++++|+.+|+.|+.
T Consensus        83 a~s~~e~~~Wi~ai~~~~~  101 (113)
T 1pls_A           83 AAFLEERDAWVRDINKAIK  101 (113)
T ss_dssp             CSSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHh
Confidence            9999999999999998864

>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A

Probab=99.82  E-value=4.2e-21  Score=138.12  Aligned_cols=68  Identities=32%  Similarity=0.829  Sum_probs=58.1

Q ss_pred             CCCeeeecCCCcccccccccccccccccccccccceeccCccCCeecccCCCCccccccHhhHHHHHhc
Q psy2207          74 VAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQE  142 (305)
Q Consensus        74 ~~p~w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~~~  142 (305)
                      ..|.|+||+++..|+.|+.+|++++||||||+||.+||+.|+.++++|+. ..+++|||+.||..+...
T Consensus         9 ~~~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~~~l~~-~~~~~RVC~~C~~~l~~~   76 (82)
T 2yw8_A            9 KGHAWLKDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNELALPS-YPKPVRVCDSCHTLLLQR   76 (82)
T ss_dssp             ------CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEEECCTT-CSSCEEECHHHHHHTTC-
T ss_pred             CCCccccCccCCcccCcCCcccCccccccCCCCCCEEChHHhCCeeecCC-CCCcCEECHHHHHHHHHh
Confidence            35899999999999999999999999999999999999999999999986 478999999999998754

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A

Probab=99.82  E-value=1.4e-19  Score=137.77  Aligned_cols=95  Identities=22%  Similarity=0.391  Sum_probs=82.1

Q ss_pred             CCceeeeeeec--c-CC-CceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEcccc-CCcceeEEEEeCCc-----
Q psy2207         209 GSQHSGWLHKK--S-GR-NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ-DNFKYVFQLKHQGQ-----  278 (305)
Q Consensus       209 ~~~~~G~L~~~--~-~~-~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~-~~~~~~F~l~~~~~-----  278 (305)
                      +++..|||+++  + .+ .|++|||||++.+|+||+++.+..|.|.|+|.++.|...... .+++|+|+|++++.     
T Consensus        11 ~VirkGWL~k~~~g~~k~~wk~rWFVLt~~~L~yyKd~~eke~~G~IpL~~~~vr~v~~~~~~rk~~F~l~~~d~r~v~~   90 (125)
T 1dyn_A           11 LVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYK   90 (125)
T ss_dssp             CEEEEEEEEESCCCGGGTSSEEEEEEEESSEEEEESSTTCSCEEEEEECTTEEEEECCSCSSSSCEEEEEEETTSSCSST
T ss_pred             ceEEEEEEEEecCccccCCceeeEEEEeccceeeecCCcccccceEEECCCceEeccCCCCCCCceEEEEECCCCccccc
Confidence            36899999996  3 55 599999999999999999999999999999999998864432 36789999998754     


Q ss_pred             --eeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         279 --DPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       279 --~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                        +.|.|+|+|.++++.|+++|.+|..
T Consensus        91 ~h~~y~LsA~t~ee~~~Wi~s~~ra~v  117 (125)
T 1dyn_A           91 DYRQLELACETQEEVDSWKASFLRAGV  117 (125)
T ss_dssp             TCSSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred             cceEEEEeCCCHHHHHHHHHHHHhCcc
Confidence              3899999999999999999987753

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*

Probab=99.82  E-value=2e-19  Score=141.40  Aligned_cols=98  Identities=18%  Similarity=0.374  Sum_probs=82.9

Q ss_pred             CCCCCceeeeeeec-----c---CCCceEEEEEEECCEEEEEccCc-----------cCccceEEEecCeEEEEccccCC
Q psy2207         206 NDSGSQHSGWLHKK-----S---GRNWKRYWFVLKDQVMYKYKASE-----------DIKALLSIPVLGYELEALNEQDN  266 (305)
Q Consensus       206 ~~~~~~~~G~L~~~-----~---~~~wkrrw~vL~~~~L~~y~~~~-----------d~~p~~~i~L~~~~v~~~~~~~~  266 (305)
                      ....+.++|||+++     +   .+.|++|||||+++.|+||+++.           +..|.+.|+|.++.|....+...
T Consensus         8 ~~~~~~k~G~L~kk~~~~~G~~~~k~Wk~rwfvL~~~~L~yykd~~~~~~~~~~~~~~~~p~g~I~L~~~~v~~~~~~~k   87 (129)
T 2p0d_A            8 GSHEVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGRHLSS   87 (129)
T ss_dssp             -CCSEEEEEEEEEEEEEETTEECCCCCEEEEEEEESSEEEEESCC--------------CCSEEEECTTCEEEECTTSCS
T ss_pred             CCcceeEEEEEEEeeeccCCCcCCCCceEEEEEEeCCEEEEEcCcccccccccccccCCCCccEEEeCCcEEEECCCCCC
Confidence            34466899999985     3   47999999999999999999983           56899999999999987655556


Q ss_pred             cceeEEEEeCCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         267 FKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       267 ~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      ++++|+|.+.+.+.|+|+|+|++++++||.+|+.|+.
T Consensus        88 r~~~F~l~t~~~~~yl~qA~s~~e~~~Wi~aI~~~i~  124 (129)
T 2p0d_A           88 RRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVIE  124 (129)
T ss_dssp             SSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence            7899999987778899999999999999999998864

>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A

Probab=99.81  E-value=4.4e-21  Score=148.88  Aligned_cols=66  Identities=38%  Similarity=0.831  Sum_probs=61.8

Q ss_pred             CCCeeeecCCCcccccccccccccccccccccccceeccCccCCeecccCCCCccccccHhhHHHHH
Q psy2207          74 VAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLV  140 (305)
Q Consensus        74 ~~p~w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~  140 (305)
                      .+|.|+||+++..|+.|+.+|++++||||||+||.|||+.||.+++++|. ..+++|||+.||..+.
T Consensus        59 ~~~~W~~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~~~~p~-~~~p~RVC~~C~~~l~  124 (125)
T 1joc_A           59 LNRKWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPS-SKKPVRVCDACFNDLQ  124 (125)
T ss_dssp             HHCCCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCTT-CSSCEEECHHHHHHTT
T ss_pred             CCCccccCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCCccccCC-CCCCCEeCHHHHHHhc
Confidence            46899999999999999999999999999999999999999999999885 5799999999999875

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.81  E-value=2.5e-19  Score=143.76  Aligned_cols=96  Identities=18%  Similarity=0.291  Sum_probs=82.1

Q ss_pred             CCCceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEcc-ccCCcceeEEEEeCCceeEEEE
Q psy2207         208 SGSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN-EQDNFKYVFQLKHQGQDPLVFG  284 (305)
Q Consensus       208 ~~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~-~~~~~~~~F~l~~~~~~~~~f~  284 (305)
                      .+++++|||+|++  .+.|++|||||+++.|+||+++.+..+.+.|+|.++.+.... ......++|+|.++ .++|+|+
T Consensus        16 ~pv~keG~L~Kkg~~~k~WkrRWFvLk~~~L~Yyk~~~d~~~~g~I~L~~~~~~~~~~~~~~~~~~F~I~t~-~r~~~f~   94 (149)
T 1x1f_A           16 LPLYFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNSTEKNCAKFTLVLP-KEEVQLK   94 (149)
T ss_dssp             SCEEEEEEEEEECTTCCSCEEEEEEEETTEEEEESCSSCSSCSEECCCSSCCEEEECCCTTSCCCEEEEECS-SCCEEEE
T ss_pred             CCccEEEEEEEeCCCCCCceeEEEEEcCCEEEEEeCCCccccCcEEECCCceEEeeccCCCCcCcEEEEEcC-CCEEEEE
Confidence            3478999999998  789999999999999999999999999999999888776332 22334689999854 5679999


Q ss_pred             cCCHHHHHHHHHHHHHHHcC
Q psy2207         285 ADNEQSYERWMKAMREATTL  304 (305)
Q Consensus       285 a~s~e~~~~Wi~al~~a~~~  304 (305)
                      |+|++++++||+||+.++.+
T Consensus        95 A~s~ee~~eWi~aI~~v~~~  114 (149)
T 1x1f_A           95 TENTESGEEWRGFILTVTEL  114 (149)
T ss_dssp             CSSHHHHHHHHHHHHHHHHS
T ss_pred             cCCHHHHHHHHHHHHHHHcc
Confidence            99999999999999988765

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A

Probab=99.81  E-value=5.3e-19  Score=134.32  Aligned_cols=96  Identities=19%  Similarity=0.342  Sum_probs=82.1

Q ss_pred             CCCceeeeeeecc--CCCceEEEEEEECC--EEEEEccCccCccceEEEecCeEEEEcccc-----CCcceeEEEEeCCc
Q psy2207         208 SGSQHSGWLHKKS--GRNWKRYWFVLKDQ--VMYKYKASEDIKALLSIPVLGYELEALNEQ-----DNFKYVFQLKHQGQ  278 (305)
Q Consensus       208 ~~~~~~G~L~~~~--~~~wkrrw~vL~~~--~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~-----~~~~~~F~l~~~~~  278 (305)
                      ..++++|||++++  .+.|++|||||.++  .|+||+++.+..|.+.|+|.++.|......     .+.+++|+|.+++.
T Consensus         5 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yyk~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i~~~~~   84 (109)
T 2i5f_A            5 GVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADE   84 (109)
T ss_dssp             CCEEEEEEEEEECTTTCCEEEEEEEEETTTTEEEEECTTSCSSCSEEEECTTCEEEEECC--------CCSEEEEECTTC
T ss_pred             CceeEEEEEEEcCCCCCCceEEEEEEeCCCcEEEEECCCCCCCccEEEECCCCEEEEccCCcccccCCCceEEEEEeCCC
Confidence            3468999999998  67899999999976  999999999999999999999887643322     13679999998877


Q ss_pred             eeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         279 DPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       279 ~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      +.|+|+|+|+++++.|+.+|+.|+.
T Consensus        85 ~~~~l~a~s~~e~~~Wi~ai~~~~k  109 (109)
T 2i5f_A           85 VHYFLQAATPKERTEWIKAIQMASR  109 (109)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHHHhC
Confidence            7899999999999999999999874

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.80  E-value=5.8e-19  Score=136.93  Aligned_cols=97  Identities=31%  Similarity=0.669  Sum_probs=84.9

Q ss_pred             CCCceeeeeeecc---CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEcc--ccCCcceeEEEEeCCceeEE
Q psy2207         208 SGSQHSGWLHKKS---GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN--EQDNFKYVFQLKHQGQDPLV  282 (305)
Q Consensus       208 ~~~~~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~--~~~~~~~~F~l~~~~~~~~~  282 (305)
                      ..++++|||++++   .+.|++|||||.++.|+||+++.+..|.+.|+|.++.|....  +...++++|+|.+++.+.|+
T Consensus        20 ~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~~~   99 (122)
T 2yry_A           20 APVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYF   99 (122)
T ss_dssp             CCEEEEEEEEEECCSSSCCEEEEEEEEETTEEEEESSTTCCSCCEEEESTTCCCEECCTTCSCSSSSEEEEECSSSCEEE
T ss_pred             CCccEEEEEEEECCCCCCCcEEEEEEEeCCEEEEECCCCCCCcccEEEcCCCEEEEcCccccCCcccEEEEecCCCcEEE
Confidence            3468999999986   678999999999999999999999999999999988766442  23456799999877778999


Q ss_pred             EEcCCHHHHHHHHHHHHHHHcC
Q psy2207         283 FGADNEQSYERWMKAMREATTL  304 (305)
Q Consensus       283 f~a~s~e~~~~Wi~al~~a~~~  304 (305)
                      |+|+|+++++.||.+|+.|+++
T Consensus       100 l~a~s~~e~~~Wi~al~~a~~~  121 (122)
T 2yry_A          100 FSAESPEEQEAWIQAMGEAARV  121 (122)
T ss_dssp             EECSSHHHHHHHHHHHHHHHCC
T ss_pred             EEcCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999875

>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1

Probab=99.80  E-value=1e-20  Score=133.07  Aligned_cols=66  Identities=33%  Similarity=0.754  Sum_probs=57.2

Q ss_pred             CCCCeeeecCCCcccccccccccccccccccccccceeccCccCCeecccCCC-CccccccHhhHHHHHh
Q psy2207          73 KVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKK-FRNFRVCEECYHYLVQ  141 (305)
Q Consensus        73 ~~~p~w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~-~~~~rvC~~C~~~~~~  141 (305)
                      ..+|.|++|   ..|+.|+.+|++++||||||+||.+||+.||.++++|+..+ .+++|||+.||..+..
T Consensus         3 ~~~p~W~~~---~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~~   69 (73)
T 1vfy_A            3 KTPADWIDS---DACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCFEDYEF   69 (73)
T ss_dssp             ----CCCCC---SBCTTTCCBCBTTBCCEECTTTCCEECGGGSCEEEEEGGGTEEEEEEECHHHHHHHHH
T ss_pred             CCCCcCccC---CcccCCCCccCCccccccCCCCCEEEcccccCCeEEcccCCCCCCCEECHHHHHHHHH
Confidence            458999997   47999999999999999999999999999999999998766 5899999999998864

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}

Probab=99.80  E-value=8.1e-19  Score=137.27  Aligned_cols=97  Identities=31%  Similarity=0.582  Sum_probs=85.0

Q ss_pred             CCCceeeeeeecc---CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEcccc--CCcceeEEEEeCCceeEE
Q psy2207         208 SGSQHSGWLHKKS---GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ--DNFKYVFQLKHQGQDPLV  282 (305)
Q Consensus       208 ~~~~~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~--~~~~~~F~l~~~~~~~~~  282 (305)
                      ..++++|||++++   .+.|++|||||+++.|+||+++.+..|.+.|+|.++.|......  ..++++|+|.+++.+.|+
T Consensus        19 ~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~~~   98 (128)
T 2dkp_A           19 APVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYY   98 (128)
T ss_dssp             SCCCEEEEEEEECCSSSCCEEEEEEEEETTEEEEESSTTCCSEEEEECGGGSEEEECCGGGCCSSCSEEEEECSSSCCEE
T ss_pred             CCcEEEEEEEEeCCCCCCCceeEEEEEeCCEEEEECCCCCcccceEEEcCceEEEEcCCcccCCCCeEEEEEcCCCCEEE
Confidence            4568999999987   57899999999999999999999999999999999988765322  356799999987778899


Q ss_pred             EEcCCHHHHHHHHHHHHHHHcC
Q psy2207         283 FGADNEQSYERWMKAMREATTL  304 (305)
Q Consensus       283 f~a~s~e~~~~Wi~al~~a~~~  304 (305)
                      |+|+|++++++|+.+|+.|+.+
T Consensus        99 l~a~s~~e~~~Wi~al~~a~~~  120 (128)
T 2dkp_A           99 FCTDTGKEMELWMKAMLDAALV  120 (128)
T ss_dssp             EECSSHHHHHHHHHHHHHHHSC
T ss_pred             EEcCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999998753

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.80  E-value=1.1e-18  Score=134.32  Aligned_cols=96  Identities=31%  Similarity=0.670  Sum_probs=84.4

Q ss_pred             CCCceeeeeeecc---CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEcc--ccCCcceeEEEEeCCceeEE
Q psy2207         208 SGSQHSGWLHKKS---GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN--EQDNFKYVFQLKHQGQDPLV  282 (305)
Q Consensus       208 ~~~~~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~--~~~~~~~~F~l~~~~~~~~~  282 (305)
                      ..++++|||++++   .+.|++|||||+++.|+||+++.+..|.+.|+|.++.|....  +...++++|+|.+++.+.|+
T Consensus         9 ~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~~~   88 (117)
T 2d9y_A            9 APVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYF   88 (117)
T ss_dssp             CCCCEEEEEEEECTTSSSCEEEEEEEEETTEEEEESSTTCCSCCEEEECSSCEEEECCTTTTCCCSSEEEEECSSSCEEE
T ss_pred             CCeeEEEEEEEeCCCCCCCceEEEEEECCCEEEEECCCCCCCcCCEEEeCCeEEEEcCccccCCCccEEEEEcCCCcEEE
Confidence            3468999999986   678999999999999999999999999999999998876542  23456799999877778899


Q ss_pred             EEcCCHHHHHHHHHHHHHHHc
Q psy2207         283 FGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       283 f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      |+|+|+++++.|+.+|+.|+.
T Consensus        89 l~a~s~~e~~~Wi~al~~~~~  109 (117)
T 2d9y_A           89 FSAESPEEQEAWIQAMGEAAR  109 (117)
T ss_dssp             EECSSHHHHHHHHHHHHHTTC
T ss_pred             EEcCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999875

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.80  E-value=9.5e-19  Score=134.68  Aligned_cols=97  Identities=32%  Similarity=0.617  Sum_probs=84.3

Q ss_pred             CCCceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccc--cCCcceeEEEEeC-------
Q psy2207         208 SGSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE--QDNFKYVFQLKHQ-------  276 (305)
Q Consensus       208 ~~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~--~~~~~~~F~l~~~-------  276 (305)
                      ..++++|||++++  .+.|++|||||.++.|+||+++.+..|.+.|+|.++.+.....  ...++++|+|.+.       
T Consensus         6 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~f~i~~~~~~~~~~   85 (118)
T 1v89_A            6 SGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRM   85 (118)
T ss_dssp             SCEEEEEEEEEECSSSSCEEEEEEEEETTEEEEESSSSCCSCSEEECSTTEEEEEECCCSSCCCCCEEEEEESCCSSCCS
T ss_pred             CCCcEEEEEEecCCCCCCccEEEEEEECCEEEEEeCCCCCCceEEEECCCCEEEEcCcCcccCCcceEEEECCccccccC
Confidence            4568999999998  7789999999999999999999999999999999998874322  2356799999973       


Q ss_pred             CceeEEEEcCCHHHHHHHHHHHHHHHcC
Q psy2207         277 GQDPLVFGADNEQSYERWMKAMREATTL  304 (305)
Q Consensus       277 ~~~~~~f~a~s~e~~~~Wi~al~~a~~~  304 (305)
                      ..+.|+|+|+|+++++.||.+|+.|+..
T Consensus        86 ~~~~~~l~a~s~~e~~~Wi~al~~~~~~  113 (118)
T 1v89_A           86 GQDSYVLMASSQAEMEEWVKFLRRVAGS  113 (118)
T ss_dssp             SCCCEEEECSSHHHHHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHHHHcc
Confidence            6778999999999999999999998753

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1

Probab=99.80  E-value=5.5e-19  Score=133.75  Aligned_cols=95  Identities=19%  Similarity=0.401  Sum_probs=83.3

Q ss_pred             CCceeeeeeecc--C----CCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEcc---ccCCcceeEEEEeCCce
Q psy2207         209 GSQHSGWLHKKS--G----RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN---EQDNFKYVFQLKHQGQD  279 (305)
Q Consensus       209 ~~~~~G~L~~~~--~----~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~---~~~~~~~~F~l~~~~~~  279 (305)
                      +++++|||++++  .    +.|++|||||.++.|+||+++.+..|.+.|+|.++.+...+   .....+++|+|.+++.+
T Consensus         2 ~v~~~G~L~K~~~~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~i~~~~~r   81 (108)
T 1u5d_A            2 SVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRR   81 (108)
T ss_dssp             CEEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECGGGCSSGGGGGEEEEECSSSC
T ss_pred             CccEEEEEEEcCCCCCccccCceeeEEEEeCCEEEEecCCCCCCCCEEEEecceEEEeCCccccccCCcceEEEEcCCCc
Confidence            457999999987  2    78999999999999999999999999999999999987653   23356799999987768


Q ss_pred             eEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         280 PLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       280 ~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      .|+|+|+|+++++.|+.+|+.|+.
T Consensus        82 ~~~l~a~s~~e~~~Wi~ai~~~i~  105 (108)
T 1u5d_A           82 TYEFTATSPAEARDWVDQISFLLK  105 (108)
T ss_dssp             CEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHH
Confidence            899999999999999999998864

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.80  E-value=3.4e-20  Score=171.44  Aligned_cols=93  Identities=12%  Similarity=0.213  Sum_probs=77.5

Q ss_pred             Cceeeeeeecc--CCCceEEEEEE--ECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEe---CCceeEE
Q psy2207         210 SQHSGWLHKKS--GRNWKRYWFVL--KDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKH---QGQDPLV  282 (305)
Q Consensus       210 ~~~~G~L~~~~--~~~wkrrw~vL--~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~---~~~~~~~  282 (305)
                      .+++|||+|++  .+.|++|||||  +++.|+||+++.+..|.|.|+|.++.+...+...+.+++|+|..   ++.+.|+
T Consensus       146 ~~keG~L~KrG~~~k~WkrRwFVL~~~~~~L~Yy~~~~~~~p~g~I~L~~~~~~~~~~~~~~~~~f~I~~~~~~~~R~y~  225 (386)
T 3lju_X          146 GYREGFLWKRGRDNGQFLSRKFVLTEREGALKYFNRNDAKEPKAVMKIEHLNATFQPAKIGHPHGLQVTYLKDNSTRNIF  225 (386)
T ss_dssp             SEEEEEEEEECSSSCCEEEEEEEEETTTTEEEEEC-----CCSEEEEGGGEEEEECHHHHTSTTCEEEEEEETTEEEEEE
T ss_pred             cccccceeeeccccCCceEEEEEEEcCCCEEEEECCCCccCcccEEEeeccEEEEcccccCCCceEEEEEecCCCceEEE
Confidence            47999999999  78999999999  79999999999999999999999987777544446789999973   6668999


Q ss_pred             EEcCCHHHHHHHHHHHHHHH
Q psy2207         283 FGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       283 f~a~s~e~~~~Wi~al~~a~  302 (305)
                      |+|+|.+++.+|+++|+.|.
T Consensus       226 l~A~s~~e~~~Wi~aIr~a~  245 (386)
T 3lju_X          226 IYHEDGKEIVDWFNALRAAR  245 (386)
T ss_dssp             EECSSHHHHHHHHHHHHHHH
T ss_pred             EEcCCHHHHHHHHHhhhhcc
Confidence            99999999999999998773

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*

Probab=99.79  E-value=1.2e-18  Score=135.33  Aligned_cols=95  Identities=29%  Similarity=0.608  Sum_probs=84.0

Q ss_pred             Cceeeeeeecc---CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccc--cCCcceeEEEEeCCceeEEEE
Q psy2207         210 SQHSGWLHKKS---GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE--QDNFKYVFQLKHQGQDPLVFG  284 (305)
Q Consensus       210 ~~~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~--~~~~~~~F~l~~~~~~~~~f~  284 (305)
                      ++++|||++++   .+.|++|||||+++.|+||+++.+..|.+.|+|.++.|.....  ....+|+|.|.+++.+.|+|.
T Consensus        11 ~~~~G~L~K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~~~~g~i~l~~~~v~~~~~~~~~~~~~~f~i~~~~~r~~~l~   90 (123)
T 1upq_A           11 VHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLA   90 (123)
T ss_dssp             EEEEEEEEEECSSSSCCEEEEEEEEETTEEEEESSTTCCSCCEEEEGGGCEEEECCSSCTTSSSSEEEEECTTSCCEEEE
T ss_pred             ceEEEEEEeeCCCCCCCceeEEEEEeCCEEEEECCCCCcccceEEECCCCEEEECCCCccCCCcEEEEEECCCCeEEEEE
Confidence            57999999987   5789999999999999999999999999999999999887643  235679999998777889999


Q ss_pred             cCCHHHHHHHHHHHHHHHcC
Q psy2207         285 ADNEQSYERWMKAMREATTL  304 (305)
Q Consensus       285 a~s~e~~~~Wi~al~~a~~~  304 (305)
                      |+|++++..||.+|+.|+..
T Consensus        91 a~s~~e~~~Wi~al~~a~~~  110 (123)
T 1upq_A           91 ADTLEDLRGWLRALGRASRA  110 (123)
T ss_dssp             CSSHHHHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHHHHHhc
Confidence            99999999999999998753

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=1.4e-18  Score=134.49  Aligned_cols=93  Identities=23%  Similarity=0.453  Sum_probs=81.0

Q ss_pred             CCCCceeeeeeecc----CCCceEEEEEEECC--EEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCCcee
Q psy2207         207 DSGSQHSGWLHKKS----GRNWKRYWFVLKDQ--VMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDP  280 (305)
Q Consensus       207 ~~~~~~~G~L~~~~----~~~wkrrw~vL~~~--~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~  280 (305)
                      ..+++++|||+|++    .+.|++|||||+++  .|+||+++.+..|.+.|+|.++.+....  ...+++|+|... .++
T Consensus         5 ~~~~~~~G~L~K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~~~~~--~~~~~~F~i~~~-~r~   81 (119)
T 2dhk_A            5 SSGKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDANPLDSIDLSSAVFDCKA--DAEEGIFEIKTP-SRV   81 (119)
T ss_dssp             CSCCCCEEEEEECSCSSSSCCCEEEEEEEETTTTEEEEESSTTCCSCSEEEEGGGCEEEECT--TGGGCEEEEECS-SCC
T ss_pred             CCCCcEEEEEEecCCCCCCCCceeEEEEEECCccEEEEECCCCCcccccEEECCCCEEEecC--CCCCCEEEEEeC-CcE
Confidence            34568999999997    46899999999998  9999999999999999999998887643  245689999855 678


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHH
Q psy2207         281 LVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       281 ~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      |+|+|+|++++++||.+|+.|+
T Consensus        82 ~~l~a~s~~e~~~Wi~al~~~~  103 (119)
T 2dhk_A           82 ITLKAATKQAMLYWLQQLQMKR  103 (119)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999875

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A

Probab=99.79  E-value=8.9e-19  Score=131.87  Aligned_cols=89  Identities=22%  Similarity=0.389  Sum_probs=77.7

Q ss_pred             eeeeeeecc--CCCceEEEEEEECCEEEEEccCccC--ccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCC
Q psy2207         212 HSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDI--KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADN  287 (305)
Q Consensus       212 ~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~--~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s  287 (305)
                      ++|||+|++  .+.|++|||||.++.|+||+++.+.  .|.|.|+|.++.|...+.   .++.|.|..++.++|+|+|+|
T Consensus         1 ~eG~L~K~g~~~k~Wk~R~fvL~~~~L~Yy~~~~~~~~~~~g~i~L~~~~v~~~~~---~~~~F~i~~~~~r~~~l~a~s   77 (103)
T 3rcp_A            1 MEGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKGSKGSIKMAVCEIKVHSA---DNTRMELIIPGEQHFYMKAVN   77 (103)
T ss_dssp             CEEEEEEECCTTTCEEEEEEEEETTEEEEESSCC---CCCSCEEEGGGCEEECCTT---CSSEEEEEETTTEEEEEECSS
T ss_pred             CceEEEEccCCCCCeeceEEEEECCEEEEEecCCcccCCcccEEEeeeeEEEEcCC---CCceEEEEeCCCCEEEEECCC
Confidence            579999998  6899999999999999999998863  599999999998876533   357999998878899999999


Q ss_pred             HHHHHHHHHHHHHHHc
Q psy2207         288 EQSYERWMKAMREATT  303 (305)
Q Consensus       288 ~e~~~~Wi~al~~a~~  303 (305)
                      +++++.|+.+|+.|..
T Consensus        78 ~~e~~~Wi~al~~a~~   93 (103)
T 3rcp_A           78 AAERQRWLVALGSSKA   93 (103)
T ss_dssp             HHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998764

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A

Probab=99.78  E-value=1.6e-18  Score=135.84  Aligned_cols=98  Identities=18%  Similarity=0.330  Sum_probs=84.1

Q ss_pred             CCCCceeeeeeecc--CCCceEEEEEEECC--EEEEEccCccCccceEEEecCeEEEEcccc-----CCcceeEEEEeCC
Q psy2207         207 DSGSQHSGWLHKKS--GRNWKRYWFVLKDQ--VMYKYKASEDIKALLSIPVLGYELEALNEQ-----DNFKYVFQLKHQG  277 (305)
Q Consensus       207 ~~~~~~~G~L~~~~--~~~wkrrw~vL~~~--~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~-----~~~~~~F~l~~~~  277 (305)
                      ...++++|||++++  .+.|++|||||.++  .|+||+++.+..|.+.|+|.++.|......     .+.+++|+|.+++
T Consensus        15 ~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i~~~~   94 (129)
T 1x05_A           15 RGVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITAD   94 (129)
T ss_dssp             CSEEEEEEEEEECCSSCCCCEEEEEEEEETTTEEEEECSSCCSSCSEEEECTTCEEEECCCCCCSSSCSSCSEEEEECTT
T ss_pred             cCCceEEEEEEecCCCCCCCeeEEEEEeCCCCEEEEECCCCCCcceeEEEccCCEEEEccCCccccccCCCeEEEEEcCC
Confidence            34468999999998  67899999999865  999999998999999999999888754322     1367999999877


Q ss_pred             ceeEEEEcCCHHHHHHHHHHHHHHHcC
Q psy2207         278 QDPLVFGADNEQSYERWMKAMREATTL  304 (305)
Q Consensus       278 ~~~~~f~a~s~e~~~~Wi~al~~a~~~  304 (305)
                      .+.|+|+|+|+++++.||.+|+.|+..
T Consensus        95 ~~~~~l~a~s~~e~~~Wi~al~~~~~~  121 (129)
T 1x05_A           95 EVHYFLQAATPKERTEWIKAIQMASRT  121 (129)
T ss_dssp             CCCCEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHHc
Confidence            778999999999999999999998753

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A

Probab=99.78  E-value=2.1e-18  Score=134.68  Aligned_cols=96  Identities=17%  Similarity=0.296  Sum_probs=83.0

Q ss_pred             CCCCceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEE
Q psy2207         207 DSGSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFG  284 (305)
Q Consensus       207 ~~~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~  284 (305)
                      ...++++|||++++  .+.|++|||||.++.|+||+++.+..|.+.|+|.++.+.........+++|.|.++ .+.|+|.
T Consensus        15 ~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~~~~~~F~i~~~-~r~~~l~   93 (126)
T 1fao_A           15 PSLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNCFCLVFP-FRTFYLC   93 (126)
T ss_dssp             CCTTCEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTCSSCSEEEEGGGCCEEEEECSSSSSSEEEEEET-TEEEEEE
T ss_pred             CCCccEEEEEEEcCCCCCCcccEEEEEECCEEEEeCCCCCCCceeEEEccceEEEEecccCCCCCEEEEEeC-CcEEEEE
Confidence            34568999999998  78899999999999999999999999999999998875544444566799999865 5679999


Q ss_pred             cCCHHHHHHHHHHHHHHHc
Q psy2207         285 ADNEQSYERWMKAMREATT  303 (305)
Q Consensus       285 a~s~e~~~~Wi~al~~a~~  303 (305)
                      |+|+++++.|+.+|+.|+.
T Consensus        94 a~s~~e~~~Wi~al~~~i~  112 (126)
T 1fao_A           94 AKTGVEADEWIKILRWKLS  112 (126)
T ss_dssp             CSSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            9999999999999998764

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.78  E-value=9.6e-19  Score=132.81  Aligned_cols=95  Identities=19%  Similarity=0.413  Sum_probs=80.5

Q ss_pred             CCCceeeeeeeccCCCceEEEEEEECCEEEEEccCcc-CccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcC
Q psy2207         208 SGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASED-IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGAD  286 (305)
Q Consensus       208 ~~~~~~G~L~~~~~~~wkrrw~vL~~~~L~~y~~~~d-~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~  286 (305)
                      .++.++|||+++..+.|++|||||+++.|+||+++.+ ..+.+.|+|.++.|...+. ..++++|+|.+++.++|+|+|+
T Consensus         6 ~~~~~~G~L~K~~~k~Wk~RwfvL~~~~L~yyk~~~~~~~~~~~i~l~~~~v~~~~~-~~~~~~F~i~~~~~r~~~l~A~   84 (107)
T 2cof_A            6 SGLETSSYLNVLVNSQWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDPS-PDHLYSFRILHKGEELAKLEAK   84 (107)
T ss_dssp             CCCTTCCEEEEEETTEEEEEEEEECSSCEEEECSSTTCSEEEEEECTTTCEEECCCB-TTBSCEEEEEETTEEEEEEECS
T ss_pred             CCCcEeEEEEEecCCCcceEEEEEECCEEEEEeCCcccCCCeeEEeccceEEEECCC-CCCCeEEEEEeCCCeEEEEEcC
Confidence            4567999999987789999999999999999998865 4556667778887776543 4677999999877889999999


Q ss_pred             CHHHHHHHHHHHHHHHc
Q psy2207         287 NEQSYERWMKAMREATT  303 (305)
Q Consensus       287 s~e~~~~Wi~al~~a~~  303 (305)
                      |++++++||++|+.|+.
T Consensus        85 s~~e~~~Wi~al~~~~~  101 (107)
T 2cof_A           85 SSEEMGHWLGLLLSESG  101 (107)
T ss_dssp             SHHHHHHHHHHHHHHSS
T ss_pred             CHHHHHHHHHHHHHHHc
Confidence            99999999999998864

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=2.7e-18  Score=131.68  Aligned_cols=96  Identities=24%  Similarity=0.459  Sum_probs=82.3

Q ss_pred             CCCCceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCe-EEEEccccCCcceeEEEEeCCceeEEE
Q psy2207         207 DSGSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGY-ELEALNEQDNFKYVFQLKHQGQDPLVF  283 (305)
Q Consensus       207 ~~~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~-~v~~~~~~~~~~~~F~l~~~~~~~~~f  283 (305)
                      ...++++|||++++  .+.|++|||||.++.|+||+++.+..|.+.|+|.++ .|...++...++++|.|..+ .+.|+|
T Consensus         5 ~~~~~~~G~L~K~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~~~~~~~F~i~~~-~r~~~l   83 (115)
T 2dn6_A            5 SSGVLKQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDKDGKKCLFLVKCF-DKTFEI   83 (115)
T ss_dssp             CCSCSEEEEEEEECTTSSCEEEEEEEECSSCEEEESSTTCSSEEEEECCCTTCEEEEECCCTTCCSEEEEECS-SCEEEE
T ss_pred             CCCceEEEEEEecCCCCCCcEEeEEEEECCEEEEeCCCCCcccCcEEEecCcEEEEECCCCCCCeeEEEEEeC-CCEEEE
Confidence            34568999999998  789999999999999999999999999999999874 55555444566799999854 567999


Q ss_pred             EcCCHHHHHHHHHHHHHHHc
Q psy2207         284 GADNEQSYERWMKAMREATT  303 (305)
Q Consensus       284 ~a~s~e~~~~Wi~al~~a~~  303 (305)
                      +|+|+++++.|+.+|+.|+.
T Consensus        84 ~a~s~~e~~~Wi~ai~~~~~  103 (115)
T 2dn6_A           84 SASDKKKKQEWIQAIHSTIH  103 (115)
T ss_dssp             ECSSHHHHHHHHHHHHHHHH
T ss_pred             EcCCHHHHHHHHHHHHHHHH
Confidence            99999999999999998874

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*

Probab=99.78  E-value=3.5e-18  Score=133.27  Aligned_cols=94  Identities=23%  Similarity=0.514  Sum_probs=82.4

Q ss_pred             CCceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCC---------
Q psy2207         209 GSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQG---------  277 (305)
Q Consensus       209 ~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~---------  277 (305)
                      +++++|||++++  .+.|++|||||.++.|+||+++.+..|.+.|+|.++.|....+ ..++++|+|..++         
T Consensus         4 ~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~-~~~~~~f~i~~~~~~~~~~~~~   82 (127)
T 1fgy_A            4 NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLD-PRKPNCFELYNPSHKGQVIKAC   82 (127)
T ss_dssp             SCSEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEEECC-SSCSSEEEEECSSSTTCCCCCE
T ss_pred             CCceEeEEEEECCCCCCeEEEEEEEECCEEEEeCCCCCCCcceEEECCceEEEEccC-CCCCceEEEecCCccccccccc
Confidence            457999999998  7789999999999999999999999999999999998876543 3667999998653         


Q ss_pred             ------------ceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         278 ------------QDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       278 ------------~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                                  .+.|+|.|+|+++++.||.+|+.|+.
T Consensus        83 ~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~  120 (127)
T 1fgy_A           83 KTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASIS  120 (127)
T ss_dssp             EECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             cccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhc
Confidence                        35899999999999999999998864

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A

Probab=99.77  E-value=3.9e-18  Score=137.03  Aligned_cols=96  Identities=19%  Similarity=0.402  Sum_probs=84.0

Q ss_pred             CCCceeeeeeecc--C----CCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccc---cCCcceeEEEEeCCc
Q psy2207         208 SGSQHSGWLHKKS--G----RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE---QDNFKYVFQLKHQGQ  278 (305)
Q Consensus       208 ~~~~~~G~L~~~~--~----~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~---~~~~~~~F~l~~~~~  278 (305)
                      ..++++|||++++  .    +.|++|||||+++.|+||+++.+..|.+.|+|.++.|...+.   ...++++|+|..++.
T Consensus        15 ~~~~~~G~L~K~g~~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~I~~~~~   94 (148)
T 1u5f_A           15 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDK   94 (148)
T ss_dssp             SSEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECTTSCSSTTGGGEEEEECTTS
T ss_pred             CCccEEEEEEEeCCCCCCcCCCceeEEEEEECCEEEEEcCCCCcccceEEEcCCcEEEECCCcccCCCCccEEEEECCCC
Confidence            4568999999998  2    589999999999999999999999999999999998876442   345569999998776


Q ss_pred             eeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         279 DPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       279 ~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      +.|+|.|+|+++++.||.+|+.|+.
T Consensus        95 r~~~l~a~s~~e~~~Wi~al~~~i~  119 (148)
T 1u5f_A           95 RIYQFTAASPKDAEEWVQQLKFILQ  119 (148)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred             cEEEEECCCHHHHHHHHHHHHHHHH
Confidence            8899999999999999999998864

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A

Probab=99.77  E-value=1.3e-18  Score=135.75  Aligned_cols=96  Identities=18%  Similarity=0.300  Sum_probs=79.4

Q ss_pred             CCCceeeeeeecc--CCCceEEEEEEECCEEEEEccCcc---------CccceEEEecCeEEEEcccc-CCcceeEEEEe
Q psy2207         208 SGSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASED---------IKALLSIPVLGYELEALNEQ-DNFKYVFQLKH  275 (305)
Q Consensus       208 ~~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d---------~~p~~~i~L~~~~v~~~~~~-~~~~~~F~l~~  275 (305)
                      ..++++|||++++  .+.|++|||||+++.|+||+.+.+         ..+.|.|+|.++.|....+. ..++|+|+|.+
T Consensus        10 ~~~~k~G~L~K~g~~~k~Wk~RwfVL~~~~L~yyk~~~~~~~e~~plg~~~~G~I~L~~~~v~~~~~~~~~k~~~F~I~~   89 (124)
T 2w2x_D           10 DEHKQQGELYMWDSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVVKAPQGKNQKSFVFILEP   89 (124)
T ss_dssp             ---CCEEEEEEEETTTTEEEEEEEEEETTEEEEEEEHHHHHHCSSCCCCSCSEEEEGGGEEEEECTTCBTTBSEEEEEEE
T ss_pred             hhcceeEEEEEECCCCCCceEeEEEEECCEEEEEcccccccccccccCCccccEEECCCCEEEEccCCcCCCCEEEEEEC
Confidence            3457999999998  788999999999999999997532         23589999999999876532 45779999998


Q ss_pred             CC--ceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         276 QG--QDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       276 ~~--~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      ..  .++|+|.|+|.+++++||.||+.|+.
T Consensus        90 ~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~  119 (124)
T 2w2x_D           90 KQQGDPPVEFATDKVEELFEWFQSIREITW  119 (124)
T ss_dssp             CC--CCCEEEEECCCHHHHHHHHHHHHHHC
T ss_pred             CCCCCceEEEEECCHHHHHHHHHHHHHHHH
Confidence            65  46799999999999999999998874

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.77  E-value=2.6e-18  Score=133.66  Aligned_cols=97  Identities=23%  Similarity=0.391  Sum_probs=81.4

Q ss_pred             CCCCceeeeeeecc----------CCCceEEEEEEECCEEEEEccCccCc------cceEEEecCeEEEEccccCCccee
Q psy2207         207 DSGSQHSGWLHKKS----------GRNWKRYWFVLKDQVMYKYKASEDIK------ALLSIPVLGYELEALNEQDNFKYV  270 (305)
Q Consensus       207 ~~~~~~~G~L~~~~----------~~~wkrrw~vL~~~~L~~y~~~~d~~------p~~~i~L~~~~v~~~~~~~~~~~~  270 (305)
                      ...+.++|||++++          .+.|++|||||+++.|+||+++.+..      +...|+|.++.+....+...++|+
T Consensus         5 ~~~v~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~r~~~   84 (123)
T 1wjm_A            5 SSGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAFDYRKRKHV   84 (123)
T ss_dssp             CCCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCEEEECTTCSSCSSE
T ss_pred             CCCeEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEEcccccccCcccCCCceEEccCcEEeecccccCCCCE
Confidence            34567999999875          46899999999999999999977642      345688888888776655678899


Q ss_pred             EEEEeCCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         271 FQLKHQGQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       271 F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      |+|.+.+.+.|+|+|+|++++++||.+|+.|+.
T Consensus        85 F~i~~~~~~~~~f~A~s~~e~~~Wi~ai~~~~~  117 (123)
T 1wjm_A           85 FKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIA  117 (123)
T ss_dssp             EEEECSSSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCcEEEEECCCHHHHHHHHHHHHHHHh
Confidence            999987778899999999999999999998864

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.77  E-value=3.3e-18  Score=133.68  Aligned_cols=93  Identities=13%  Similarity=0.326  Sum_probs=77.0

Q ss_pred             ceeeeeeecc---CCCceEEEEEEE---CCEEEEEcc----CccCccceEEEecC-eEEEEcc--ccCCcceeEEEEeCC
Q psy2207         211 QHSGWLHKKS---GRNWKRYWFVLK---DQVMYKYKA----SEDIKALLSIPVLG-YELEALN--EQDNFKYVFQLKHQG  277 (305)
Q Consensus       211 ~~~G~L~~~~---~~~wkrrw~vL~---~~~L~~y~~----~~d~~p~~~i~L~~-~~v~~~~--~~~~~~~~F~l~~~~  277 (305)
                      .++|||+|++   .+.|++|||||+   +..|+||++    +.+..|.|.|+|.. ..|....  .....+|+|.|. ++
T Consensus        16 ~~~G~L~K~g~~~~k~WkrRwFvL~~~~~~~L~Y~k~~~~~~~~~~~~G~I~L~~~~~V~~~~~~~~~~~~~~F~i~-t~   94 (126)
T 1v5p_A           16 RICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVIN-AL   94 (126)
T ss_dssp             CEECCEEEECTTCSSCEEEEEEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTTSCSCSSEEEEE-CS
T ss_pred             ceEEEEEEeCCCCCCCccceEEEEecCCCCEEEEECCCCCCCCCceeeEEEECCCccEEecCCcccCCCCCEEEEEE-CC
Confidence            5899999986   679999999999   667888898    56788999999987 5666543  233556899775 67


Q ss_pred             ceeEEEEcCCHHHHHHHHHHHHHHHcC
Q psy2207         278 QDPLVFGADNEQSYERWMKAMREATTL  304 (305)
Q Consensus       278 ~~~~~f~a~s~e~~~~Wi~al~~a~~~  304 (305)
                      .++|+|.|+|+++++.||+||+.|+..
T Consensus        95 ~r~y~l~A~s~~e~~~Wi~al~~a~~~  121 (126)
T 1v5p_A           95 SQRYFLQANDQKDLKDWVEALNQASKS  121 (126)
T ss_dssp             SCEEEEECSSHHHHHHHHHHHHHTTTT
T ss_pred             CEEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            788999999999999999999998764

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.77  E-value=1.4e-18  Score=134.68  Aligned_cols=93  Identities=16%  Similarity=0.322  Sum_probs=80.0

Q ss_pred             CCCceeeeeeecc--CCCceEEEEEEE--CCEEEEEccCccC--ccceEEEecCeEEEEccccCCcceeEEEEeCCceeE
Q psy2207         208 SGSQHSGWLHKKS--GRNWKRYWFVLK--DQVMYKYKASEDI--KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPL  281 (305)
Q Consensus       208 ~~~~~~G~L~~~~--~~~wkrrw~vL~--~~~L~~y~~~~d~--~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~  281 (305)
                      ..+.++|||+|++  .+.|++|||||+  ++.|+||+++.+.  .|.+.|+|.++.|...+   ..+++|+|.+++.++|
T Consensus         6 ~~~~~~G~L~K~~~~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~~~~~~g~I~L~~~~v~~~~---~~~~~F~i~~~~~r~~   82 (120)
T 2d9x_A            6 SGENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAVISPSD---EDSHTFTVNAASGEQY   82 (120)
T ss_dssp             SCCCCEEEEEEEEETTTEEEEEEEEECTTTCEEEEESSGGGSSSCCSEEEECTTCCEECCS---SSSSCEEECCSSSCCE
T ss_pred             CCCcEEEEEEecCCCCCCceEEEEEEECCCCEEEEEecCcccCCCccceEEcceEEEEecC---CCCCEEEEEcCCCCEE
Confidence            3457999999998  689999999998  5799999998774  78999999998876543   3458999997766889


Q ss_pred             EEEcCCHHHHHHHHHHHHHHHc
Q psy2207         282 VFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       282 ~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      +|.|+|++++++||.+|+.|+.
T Consensus        83 ~l~a~s~~e~~~Wi~al~~~~~  104 (120)
T 2d9x_A           83 KLRATDAKERQHWVSRLQICTQ  104 (120)
T ss_dssp             EECCSSHHHHHHHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999998764

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A

Probab=99.77  E-value=1.5e-18  Score=132.61  Aligned_cols=95  Identities=17%  Similarity=0.329  Sum_probs=79.3

Q ss_pred             CCceeeeeeecc--CCCceEEEEEE-ECCEEEEEccCccCccceEEEecCeEEEE----------ccccCCcceeEEEEe
Q psy2207         209 GSQHSGWLHKKS--GRNWKRYWFVL-KDQVMYKYKASEDIKALLSIPVLGYELEA----------LNEQDNFKYVFQLKH  275 (305)
Q Consensus       209 ~~~~~G~L~~~~--~~~wkrrw~vL-~~~~L~~y~~~~d~~p~~~i~L~~~~v~~----------~~~~~~~~~~F~l~~  275 (305)
                      .++++|||++++  .+.|++||||| .++.|+||+++.+..+.+.|+|....+..          .++...++++|.|.+
T Consensus         4 ~~~~~G~L~K~g~~~k~WkkR~fvL~~~~~L~yyk~~~~~~~~g~i~l~~~~i~l~~~~~v~~v~~~~~~~~~~~F~i~~   83 (112)
T 3aj4_A            4 AFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQECRDTQPPDGKSKDCMLQIVC   83 (112)
T ss_dssp             SCSEEEEEEEECSSSCCEEEEEEEECTTSEEEEESSTTCCSEEEEEEHHHHEEEEEEGGGCCSCCCSTTCCGGGEEEEEE
T ss_pred             ceeEEEEEEeeCCCCCCeeceEEEEeeCCEEEEEcCCCCCCCCccccccccceeecccccccccCCCCCCCcCcEEEEEe
Confidence            357999999998  78999999999 89999999999998999999996544321          112223468999998


Q ss_pred             CCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         276 QGQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       276 ~~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      ++.++|+|+|+|+++++.|+.||+.|..
T Consensus        84 ~~~r~~~l~a~s~~e~~~Wi~al~~a~~  111 (112)
T 3aj4_A           84 RDGKTISLCAESTDDCLAWKFTLQDSRT  111 (112)
T ss_dssp             TTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             cCCcEEEEEeCCHHHHHHHHHHHHHHhh
Confidence            8788999999999999999999998863

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.77  E-value=2.7e-18  Score=135.04  Aligned_cols=96  Identities=23%  Similarity=0.381  Sum_probs=78.7

Q ss_pred             CCCceeeeeeecc--CCCceEEEEEE-ECCEEEEEccCccCccceEEEecC-e-EEEE--------ccccCCcceeEEEE
Q psy2207         208 SGSQHSGWLHKKS--GRNWKRYWFVL-KDQVMYKYKASEDIKALLSIPVLG-Y-ELEA--------LNEQDNFKYVFQLK  274 (305)
Q Consensus       208 ~~~~~~G~L~~~~--~~~wkrrw~vL-~~~~L~~y~~~~d~~p~~~i~L~~-~-~v~~--------~~~~~~~~~~F~l~  274 (305)
                      ..++++|||+|++  .+.|++||||| +++.|+||+++.+..+.+.|.|.. + .+..        .++...++++|+|.
T Consensus         6 ~~v~~~G~L~K~g~~~k~WkkRwFVL~~~~~L~Yyk~~~~~~~~g~i~l~~~~~~i~~~~~~~~v~~~~~~~~~~~F~I~   85 (130)
T 2d9v_A            6 SGLVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRSRDGLLTVN   85 (130)
T ss_dssp             CCEEEEEEEEEECSSSCCEEEEEEEEETTTEEEEESSSSTTSEEEEEECTTTEEEEEEGGGCSSCCCCSSCCTTTEEEEE
T ss_pred             CceeEEEEEEeecCccCCceeeEEEEccCCEEEEEeCCCCCCcCceEecccceeEEeccccccccCCCCCCCcCcEEEEE
Confidence            4467999999998  78999999999 899999999998888899887742 2 2221        11223456899999


Q ss_pred             eCCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         275 HQGQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       275 ~~~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      +.+.++|+|+|+|++++++||+||+.|..
T Consensus        86 ~~~~r~~~l~A~s~~e~~~Wi~al~~a~~  114 (130)
T 2d9v_A           86 LREGSRLHLCAETRDDAIAWKTALMEANS  114 (130)
T ss_dssp             ETTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             eCCCCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence            87767899999999999999999999875

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}

Probab=99.77  E-value=2.1e-18  Score=127.74  Aligned_cols=88  Identities=18%  Similarity=0.338  Sum_probs=76.2

Q ss_pred             ceeeeeeecc--CCCceEEEEEEECCEEEEEccCcc--CccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcC
Q psy2207         211 QHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASED--IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGAD  286 (305)
Q Consensus       211 ~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d--~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~  286 (305)
                      ..+|||+|++  .+.|++|||||.++.|+||+++.+  ..|.+.|+|.++.+....   ..++.|.|..+ .++|+|+|+
T Consensus         2 ~k~G~L~K~g~~~k~WkkR~FvL~~~~L~Yy~~~~~~~~~~~~~i~l~~~~~~~~~---~~~~~F~i~~~-~r~~~l~A~   77 (94)
T 2rsg_A            2 ERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDETEYGCRGSICLSKAVITPHD---FDECRFDISVN-DSVWYLRAQ   77 (94)
T ss_dssp             CEEEEEEEESSSTTCEEEEEEEEETTEEEEESSTTGGGTCCSEEEETTTCEEEECS---SCSSEEEEEET-TEEEEEECC
T ss_pred             CEEEEEEEeCCCCCCceEEEEEEECCEEEEEEecccccccceeeEecceeeeecCc---ccceeEEEEeC-CeEEEEECC
Confidence            5899999998  789999999999999999998765  458899999998887653   34579999865 567999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q psy2207         287 NEQSYERWMKAMREAT  302 (305)
Q Consensus       287 s~e~~~~Wi~al~~a~  302 (305)
                      |++++++||+||++|.
T Consensus        78 s~~e~~~Wi~aLq~Ak   93 (94)
T 2rsg_A           78 DPDHRQQWIDAIEQHK   93 (94)
T ss_dssp             SSCCTHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhhc
Confidence            9999999999999873

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.77  E-value=5.4e-18  Score=130.37  Aligned_cols=96  Identities=25%  Similarity=0.370  Sum_probs=81.0

Q ss_pred             CCCCceeeeeeecc--CCCceEEEEEEE--CCEEEEEccCccCccceEEEecCeEEEEccc-------cCCcceeEEEEe
Q psy2207         207 DSGSQHSGWLHKKS--GRNWKRYWFVLK--DQVMYKYKASEDIKALLSIPVLGYELEALNE-------QDNFKYVFQLKH  275 (305)
Q Consensus       207 ~~~~~~~G~L~~~~--~~~wkrrw~vL~--~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~-------~~~~~~~F~l~~  275 (305)
                      .+.++++|||++++  .+.|++|||||.  ++.|+||+++.+..|.+.|+|.++.+.....       .....++|+|..
T Consensus         5 ~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~~~~~~~~~~~~~F~i~~   84 (117)
T 1v5u_A            5 SSGRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKT   84 (117)
T ss_dssp             CCSSSEEEEEEECCCSSSCCEEEEEEEETTTTEEEEESSSSCSSCCCEEEGGGEEEEECCCCCTTSCSSSCTTTCEEEEE
T ss_pred             cCCccEEEEEEecCCCCCCceeeEEEEECCCCEEEEeecCCCCccceEEEccCcEEEeecCccccccccCCCCeEEEEEC
Confidence            34568999999998  689999999999  8899999999999999999999887664322       134458999975


Q ss_pred             CCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         276 QGQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       276 ~~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                       ..+.|+|+|+|+++++.||.+|+.|+.
T Consensus        85 -~~r~~~l~a~s~~e~~~Wi~al~~~i~  111 (117)
T 1v5u_A           85 -TRRVYNFCAQDVPSAQQWVDRIQSCLS  111 (117)
T ss_dssp             -SSCEEEEECSSHHHHHHHHHHHHTTCC
T ss_pred             -CCceEEEECCCHHHHHHHHHHHHHHhc
Confidence             556799999999999999999998764

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}

Probab=99.76  E-value=1.2e-17  Score=129.37  Aligned_cols=92  Identities=22%  Similarity=0.432  Sum_probs=78.5

Q ss_pred             ceeeeeeec-----c----CCCceEEEEEEECCEEEEEccCc---------cCccceEEEecCeEEEEccccCCcceeEE
Q psy2207         211 QHSGWLHKK-----S----GRNWKRYWFVLKDQVMYKYKASE---------DIKALLSIPVLGYELEALNEQDNFKYVFQ  272 (305)
Q Consensus       211 ~~~G~L~~~-----~----~~~wkrrw~vL~~~~L~~y~~~~---------d~~p~~~i~L~~~~v~~~~~~~~~~~~F~  272 (305)
                      .+.|||.++     |    .+.|+++||+|.|+.||||+...         +..|.+.|+|.|+.|. ..+...++++|+
T Consensus         2 ~~~G~L~rk~llK~G~k~~~ksWkr~W~vL~g~~L~yf~~~~~~~~~~~~~~~~P~~~i~L~g~~V~-~~e~~~~~~~F~   80 (126)
T 2dtc_A            2 TMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQ-LPDDPEHPDIFQ   80 (126)
T ss_dssp             CEEEEEEEEEEEBTTBCCSSCCCEEEEEEEETTEEEEEEBSSSCCSSGGGBCSSCSEEEECTTCEEE-CCCCTTSTTEEE
T ss_pred             ceeeeeeeeehhhcCCcccccCcccEEEEEeCCEEEEEcccccccccccccccCCCceEEeCCCEEE-ecCCCCCCCEEE
Confidence            478888865     3    36799999999999999999763         5689999999999998 445556789999


Q ss_pred             EEeC-CceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         273 LKHQ-GQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       273 l~~~-~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      |... .+..|.|+|+|++++..|++||+.|+.
T Consensus        81 L~~~~~G~~Y~fqA~s~~~~~~W~~ai~~a~~  112 (126)
T 2dtc_A           81 LNNPDKGNVYKFQTGSRFHAILWHKHLDDACK  112 (126)
T ss_dssp             EECTTSCSEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             EeeCCCCCEEEEeCCCHHHHHHHHHHHHHHHh
Confidence            9975 566799999999999999999999874

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}

Probab=99.76  E-value=1.2e-17  Score=130.24  Aligned_cols=97  Identities=21%  Similarity=0.391  Sum_probs=81.5

Q ss_pred             CCCCceeeeeeecc---------CCCceEEEEEEECCEEEEEccCccC------------ccceEEEecCeEEEEcc-cc
Q psy2207         207 DSGSQHSGWLHKKS---------GRNWKRYWFVLKDQVMYKYKASEDI------------KALLSIPVLGYELEALN-EQ  264 (305)
Q Consensus       207 ~~~~~~~G~L~~~~---------~~~wkrrw~vL~~~~L~~y~~~~d~------------~p~~~i~L~~~~v~~~~-~~  264 (305)
                      ...+.+.|||+++.         .+.|+++||||+++.|+||+++.+.            .|.+.|+|.++.+.... +.
T Consensus         5 ~~~v~keG~L~rK~~~~~gkk~~~r~W~~~w~VL~~~~L~~yKd~~~~~~~~~~~~~~~~~~~~~i~L~~a~v~~~~~d~   84 (124)
T 3pp2_A            5 TKTLDKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAPKDK   84 (124)
T ss_dssp             ----CEEEEEEEEEEEETTEECSSCCCEEEEEEEETTEEEEESCSBCC---CBCCGGGGCSEEEEEECTTCEEEECCGGG
T ss_pred             CCcEEEEEEEEEEEeccCCccCCCCCceEEEEEEECCEEEEEecCccccccCccCcccccCCcceEEcCCCEEEeccccc
Confidence            34567999999873         3689999999999999999987654            47789999999998874 55


Q ss_pred             CCcceeEEEEeCCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         265 DNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       265 ~~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      ..++++|+|...+.+.|+|+|+|+++++.|+.+|+.|++
T Consensus        85 ~krk~vF~l~t~~~~~ylfqA~s~~e~~~Wi~aI~~aI~  123 (124)
T 3pp2_A           85 SSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGIQ  123 (124)
T ss_dssp             CSSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred             CCCceEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHh
Confidence            677899999987778899999999999999999999875

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.75  E-value=9.9e-18  Score=128.72  Aligned_cols=90  Identities=22%  Similarity=0.435  Sum_probs=77.5

Q ss_pred             CCCceeeeeeecc---CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEE
Q psy2207         208 SGSQHSGWLHKKS---GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFG  284 (305)
Q Consensus       208 ~~~~~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~  284 (305)
                      ..++++|||+|++   .+.|++|||||.++.|+||+++.+..|.+.|+|.++..+....    +++|.|.. ..+.|+|+
T Consensus         6 ~~~~~~G~L~K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~~~~g~i~l~~~~~v~~~~----~~~F~i~~-~~r~~~l~   80 (115)
T 2cod_A            6 SGKVKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQG----DNKFEVVT-TQRTFVFR   80 (115)
T ss_dssp             SCCCEEEEEEECCSSSSSCCEEEEEEECSSEEEEEESSCCSSCCCEEETTTEEEEEEET----TTEEEEEE-SSCCEEEE
T ss_pred             CCccEEEEEEEcCCCCCCCCceEEEEEECCEEEEEcCCCCcccCCEEECCcceEEEeCC----CCEEEEEe-CCcEEEEE
Confidence            3467999999987   5789999999999999999999998999999998875443321    47999984 56789999


Q ss_pred             cCCHHHHHHHHHHHHHHH
Q psy2207         285 ADNEQSYERWMKAMREAT  302 (305)
Q Consensus       285 a~s~e~~~~Wi~al~~a~  302 (305)
                      |+|++++++||.+|+.|+
T Consensus        81 a~s~~e~~~Wi~~l~~~~   98 (115)
T 2cod_A           81 VEKEEERNDWISILLNAL   98 (115)
T ss_dssp             CSSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999999886

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1

Probab=99.75  E-value=6.9e-18  Score=131.32  Aligned_cols=96  Identities=22%  Similarity=0.365  Sum_probs=80.6

Q ss_pred             CCCCceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEc-c--ccCCcceeEEEEeCCceeE
Q psy2207         207 DSGSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEAL-N--EQDNFKYVFQLKHQGQDPL  281 (305)
Q Consensus       207 ~~~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~-~--~~~~~~~~F~l~~~~~~~~  281 (305)
                      ...++++|||++++  .+.|++|||||.++.|+||+++.+..|.+.|+|.++..+.. .  +...++++|+|.. ..+.|
T Consensus        11 ~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~l~~~~~v~~~~~~~~~~~~~~F~i~~-~~r~~   89 (125)
T 1eaz_A           11 DSAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVT-TSRTF   89 (125)
T ss_dssp             -CCCSEEEEEEEECTTTCCEEEEEEEECSSEEEEESSTTCSSCSEEEEGGGCCEEEECTTHHHHTCSSEEEEEC-SSCEE
T ss_pred             CCCccEEEEEEEeCCCCCCcceEEEEEeCCEEEEEcCCCCCcceeEEEcccceEEeeccccccCCcCCEEEEEe-CCcEE
Confidence            34568999999998  68899999999999999999999999999999988754432 1  1235578999985 45679


Q ss_pred             EEEcCCHHHHHHHHHHHHHHHc
Q psy2207         282 VFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       282 ~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      +|+|+|+++++.|+.+|+.|+.
T Consensus        90 ~l~a~s~~e~~~W~~al~~~i~  111 (125)
T 1eaz_A           90 YVQADSPEEMHSWIKAVSGAIV  111 (125)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEcCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999998864

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A

Probab=99.75  E-value=8.6e-18  Score=126.91  Aligned_cols=90  Identities=23%  Similarity=0.466  Sum_probs=76.7

Q ss_pred             eeeeeeecc----------CCCceEEEEEEECCEEEEEccCcc----C--ccceEEEecCeEEEEccccCCcceeEEEEe
Q psy2207         212 HSGWLHKKS----------GRNWKRYWFVLKDQVMYKYKASED----I--KALLSIPVLGYELEALNEQDNFKYVFQLKH  275 (305)
Q Consensus       212 ~~G~L~~~~----------~~~wkrrw~vL~~~~L~~y~~~~d----~--~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~  275 (305)
                      ++|||++++          .+.|++|||||+++.|+||+++.+    .  .+...|+|.++.+.+..+...++++|+|.+
T Consensus         1 ~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~F~i~~   80 (106)
T 1btn_A            1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKKKKHVFKLRL   80 (106)
T ss_dssp             CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEEECSSCCSSSSEEEEEC
T ss_pred             CccEEEEEEEEeCCCccCCCCChhEEEEEEECCEEEEEeCCcccccCCCCCCcceEECCCCEEEEcccccCCccEEEEEe
Confidence            579998885          468999999999999999998764    1  366789998888877655567789999997


Q ss_pred             CCceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207         276 QGQDPLVFGADNEQSYERWMKAMREA  301 (305)
Q Consensus       276 ~~~~~~~f~a~s~e~~~~Wi~al~~a  301 (305)
                      .+.+.|+|+|+|++++++||.+|+.|
T Consensus        81 ~~~~~~~~~A~s~~e~~~Wi~ai~~A  106 (106)
T 1btn_A           81 SDGNEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             TTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcC
Confidence            77788999999999999999999875

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=99.75  E-value=7.2e-19  Score=150.79  Aligned_cols=76  Identities=36%  Similarity=0.786  Sum_probs=65.7

Q ss_pred             CCcccCcCCCCCeeeecCCCcccccccccccccccccccccccceeccCccCCeecccCCC-CccccccHhhHHHHHhcc
Q psy2207          65 SIPELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKK-FRNFRVCEECYHYLVQEF  143 (305)
Q Consensus        65 ~~~~~~~~~~~p~w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~-~~~~rvC~~C~~~~~~~~  143 (305)
                      +.+.+..+..+|.|+++   ..|+.|..+|++++||||||+||.+||+.||.++.++|..+ .+++|||+.||..+....
T Consensus       148 ~~damf~~~~~p~W~~~---~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~l~~~~  224 (226)
T 3zyq_A          148 ESDAMFAAERAPDWVDA---EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQLNRKA  224 (226)
T ss_dssp             GGGGCCCCCCCCCCCCC---SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHHHCC--
T ss_pred             hHHHhhhcccccccccC---CCCcCcCCCCCccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHHhhhhc
Confidence            34456677889999986   48999999999999999999999999999999999998654 689999999999987653

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}

Probab=99.74  E-value=5.8e-18  Score=133.50  Aligned_cols=95  Identities=18%  Similarity=0.324  Sum_probs=78.0

Q ss_pred             CCceeeeeeec--c--CCCceEEEEEEECCEEEEEccCcc---CccceEEEecCeE---EEEccc-cCCcceeEEEEe--
Q psy2207         209 GSQHSGWLHKK--S--GRNWKRYWFVLKDQVMYKYKASED---IKALLSIPVLGYE---LEALNE-QDNFKYVFQLKH--  275 (305)
Q Consensus       209 ~~~~~G~L~~~--~--~~~wkrrw~vL~~~~L~~y~~~~d---~~p~~~i~L~~~~---v~~~~~-~~~~~~~F~l~~--  275 (305)
                      .++++|||+++  +  .+.|++|||||+++.|+||+.+.+   ..|.|.|+|.++.   |...+. ...++++|+|.+  
T Consensus         4 ~v~~~G~L~K~~~~~~~~~WkrRwfvL~~~~L~yyk~~~d~~~~~p~g~I~L~~~~~~~v~~~~~~~~~~~~~F~i~~~~   83 (134)
T 2y7b_A            4 SVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSRQIEPANREFCARRNTFELITVR   83 (134)
T ss_dssp             CCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEESSHHHHTTSCCSEEEEGGGBCSSSCEECCTTTCCCTTEEEEEEEE
T ss_pred             CceEEeeEEEEcCCCCCCCcEEEEEEEECCEEEEECCCCcccccCceEEEEhhhCccccccccchhhccCCCEEEEEecC
Confidence            46799999998  4  578999999999999999997655   7899999999887   444332 135679999986  


Q ss_pred             CCc-----------------eeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         276 QGQ-----------------DPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       276 ~~~-----------------~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      +..                 +.|+|+|+|+++++.||.+|+.|+.
T Consensus        84 p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~  128 (134)
T 2y7b_A           84 PQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLV  128 (134)
T ss_dssp             ECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHH
Confidence            221                 4699999999999999999998864

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A

Probab=99.74  E-value=3.5e-18  Score=133.20  Aligned_cols=96  Identities=18%  Similarity=0.397  Sum_probs=78.1

Q ss_pred             CCCceeeeeeecc--CCCceEEEEEEEC-CEEEEEccCccCccceEEEecCeEEE---EccccCCcceeEEEEe---CCc
Q psy2207         208 SGSQHSGWLHKKS--GRNWKRYWFVLKD-QVMYKYKASEDIKALLSIPVLGYELE---ALNEQDNFKYVFQLKH---QGQ  278 (305)
Q Consensus       208 ~~~~~~G~L~~~~--~~~wkrrw~vL~~-~~L~~y~~~~d~~p~~~i~L~~~~v~---~~~~~~~~~~~F~l~~---~~~  278 (305)
                      ..++++|||+|++  .+.|++|||||++ +.|+||+++.+..+.+.|+|.++.+.   .......++++|+|.+   +..
T Consensus         6 ~~~~~~G~L~K~g~~~k~WkkRwfvL~~~~~L~yy~~~~~~~~~g~i~L~~~~~~~~~~~~~~~~~~~~F~I~~~~~~~~   85 (125)
T 1unq_A            6 VAIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWTTV   85 (125)
T ss_dssp             GCEEEEEEEEEECSSSCCEEEEEEEEETTSEEEEESSCCCSHHHHTSCSEEEECTTCEEEEECSSSTTEEEEEEEETTEE
T ss_pred             CCeeEEeeEEeccCCccCccCcEEEEecCCEEEEEeCCCCCCCCceeEccceeEEeeeecccccCCCCEEEEEecCCCCc
Confidence            3467999999998  7899999999995 69999999988888888888765542   1112235678999986   566


Q ss_pred             eeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         279 DPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       279 ~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      +.|+|+|+|+++++.||.||+.|+.
T Consensus        86 ~~~~~~a~s~~e~~~Wi~al~~~~~  110 (125)
T 1unq_A           86 IERTFHVETPEEREEWTTAIQTVAD  110 (125)
T ss_dssp             EEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEeCCHHHHHHHHHHHHHHHh
Confidence            7899999999999999999998763

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.74  E-value=1.1e-17  Score=134.69  Aligned_cols=95  Identities=25%  Similarity=0.382  Sum_probs=82.8

Q ss_pred             CCCceeeeeeecc--------CCCceEEEEEEECC-----EEEEEccCc-cCccceEEEecCeEEEEccccCCcceeEEE
Q psy2207         208 SGSQHSGWLHKKS--------GRNWKRYWFVLKDQ-----VMYKYKASE-DIKALLSIPVLGYELEALNEQDNFKYVFQL  273 (305)
Q Consensus       208 ~~~~~~G~L~~~~--------~~~wkrrw~vL~~~-----~L~~y~~~~-d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l  273 (305)
                      ..++++|||++++        .+.|++|||||.+.     .|+||+++. +..|.+.|+|.++.+..... ..++++|+|
T Consensus        16 ~~~~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~~~~~g~I~L~~~~~~~~~~-~~~~~~F~i   94 (150)
T 1wg7_A           16 GGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQNN-KVRRFAFEL   94 (150)
T ss_dssp             CCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCSSCCSEEECTTTCCEECCCC-SSCTTEEEE
T ss_pred             CCeeEEEEEEEecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCCCCCcCcEEecccCEEEecCC-CCCceEEEE
Confidence            4568999999986        25899999999986     999999987 78999999999988876543 467799999


Q ss_pred             EeCCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         274 KHQGQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       274 ~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      .+.+.+.|+|+|+|++++..||.+|+.|+.
T Consensus        95 ~~~~~r~~~l~A~s~~e~~~Wi~al~~ai~  124 (150)
T 1wg7_A           95 KMQDKSSYLLAADSEVEMEEWITILNKILQ  124 (150)
T ss_dssp             ECSSSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EeCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            987768899999999999999999998864

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.74  E-value=8.1e-18  Score=131.78  Aligned_cols=96  Identities=21%  Similarity=0.410  Sum_probs=81.8

Q ss_pred             CCCceeeeeeecc--CCCceEEEEEEE--CCEEEEEccC-ccCccceEEEecCeEEEEcccc--------CCcceeEEEE
Q psy2207         208 SGSQHSGWLHKKS--GRNWKRYWFVLK--DQVMYKYKAS-EDIKALLSIPVLGYELEALNEQ--------DNFKYVFQLK  274 (305)
Q Consensus       208 ~~~~~~G~L~~~~--~~~wkrrw~vL~--~~~L~~y~~~-~d~~p~~~i~L~~~~v~~~~~~--------~~~~~~F~l~  274 (305)
                      ..++++|||++++  .+.|++|||||.  +..|+||+.+ .+..|.+.|+|.++.|......        ..++++|+|.
T Consensus        16 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~d~~~L~yy~~~~~~~~~~g~i~L~~~~v~~~~~~~~p~~~~~~~~~~~F~I~   95 (129)
T 1x1g_A           16 GTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVI   95 (129)
T ss_dssp             SEEEEEEEEEEECSSSSSEEEEEEEEEESSCEEEEECSSSCCSSCSCCEESTTCCCEECCSSSSCSSCSSCCCSSCEEEC
T ss_pred             CCEEEEEEEEEECCCCCCeeeEEEEEeCCCCeEEEeCCCCcCCccceEEECcCCEEEEeCCCCCcccccCCCCCceEEEE
Confidence            4468999999998  789999999999  4799999997 7789999999998877654322        0157999999


Q ss_pred             eCCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         275 HQGQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       275 ~~~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      +++.++|+|+|+|++++++||.+|+.|+.
T Consensus        96 ~~~~r~~~l~a~s~~e~~~Wi~al~~~~~  124 (129)
T 1x1g_A           96 TKDDTHYYIQASSKAERAEWIEAIKKLTS  124 (129)
T ss_dssp             CTTCCCEEECCSSHHHHHHHHHHHHHHSS
T ss_pred             cCCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            87777899999999999999999999874

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A

Probab=99.74  E-value=2.6e-17  Score=139.92  Aligned_cols=96  Identities=20%  Similarity=0.430  Sum_probs=84.5

Q ss_pred             CCCceeeeeeecc------CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccc---cCCcceeEEEEeCCc
Q psy2207         208 SGSQHSGWLHKKS------GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE---QDNFKYVFQLKHQGQ  278 (305)
Q Consensus       208 ~~~~~~G~L~~~~------~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~---~~~~~~~F~l~~~~~  278 (305)
                      ..++++|||++++      .+.|++|||||+++.|+||+++.+..|.|.|+|.++.+...+.   ...++++|+|.+++.
T Consensus       104 ~~v~k~G~L~Kkg~~~~~~~k~WkkRwfVL~~~~L~Yyk~~~~~~p~g~I~L~~~~~v~~~~~~~~~~k~~~F~I~t~~~  183 (211)
T 1u5e_A          104 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDK  183 (211)
T ss_dssp             SSEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECGGGCSSTTGGGEEEEECSSS
T ss_pred             CCccEEEEEEEECCCCCcCCCCcEeEEEEEECCEEEEEcCCCCccceEEEEeCCcEEEEcCCccccCCCCCEEEEEcCCC
Confidence            4568999999998      2599999999999999999999999999999999999886432   335579999998777


Q ss_pred             eeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         279 DPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       279 ~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      ++|+|+|+|+++++.||.+|+.|+.
T Consensus       184 r~~~l~A~s~~e~~~Wi~aL~~ai~  208 (211)
T 1u5e_A          184 RIYQFTAASPKDAEEWVQQLKFILQ  208 (211)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999874

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=99.74  E-value=2.1e-18  Score=147.67  Aligned_cols=71  Identities=38%  Similarity=0.872  Sum_probs=62.3

Q ss_pred             ccCcCCCCCeeeecCCCcccccccccccccccccccccccceeccCccCCeecccCCC-CccccccHhhHHHHHh
Q psy2207          68 ELNLGKVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKK-FRNFRVCEECYHYLVQ  141 (305)
Q Consensus        68 ~~~~~~~~p~w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~-~~~~rvC~~C~~~~~~  141 (305)
                      .+..+..+|.|+++   ..|+.|+.+|++++||||||+||.+||+.||.++.++|..+ .+++|||+.||..+..
T Consensus       148 a~f~~~~~~~W~~~---~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~~~~~~~~~~~~~RvC~~C~~~l~~  219 (220)
T 1dvp_A          148 AMFTADTAPNWADG---RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAALQR  219 (220)
T ss_dssp             -CCCCSCCCCCCCC---SBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEEEEGGGTEEEEEEECHHHHHHHHH
T ss_pred             ccccccccccCCCC---CccCCCCCccCCcccccccCCcCCEEChHHhCCeeecCcCCCCCCCEeCHHHHHHHhc
Confidence            44456779999986   58999999999999999999999999999999999998654 6899999999998753

>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1

Probab=99.74  E-value=1.3e-18  Score=126.29  Aligned_cols=62  Identities=24%  Similarity=0.569  Sum_probs=57.6

Q ss_pred             cCCCcccccccccccccccccccccccceeccCccCCeecccCCCCccccccHhhHHHHHhc
Q psy2207          81 DSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQE  142 (305)
Q Consensus        81 d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~~~  142 (305)
                      +.++..|+.|..+|++++||||||+||.|||+.|+.++++|+..+.+++|||+.||..+...
T Consensus         6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l~~~   67 (88)
T 1wfk_A            6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRG   67 (88)
T ss_dssp             CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHC
T ss_pred             CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHHHhc
Confidence            34577899999999999999999999999999999999999988889999999999999865

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1

Probab=99.73  E-value=5.8e-18  Score=131.59  Aligned_cols=97  Identities=18%  Similarity=0.387  Sum_probs=81.5

Q ss_pred             CCCceeeeeeecc----------CCCceEEEEEEECCEEEEEccCccCcc--------ceEEEecCeEEEEccccCCcce
Q psy2207         208 SGSQHSGWLHKKS----------GRNWKRYWFVLKDQVMYKYKASEDIKA--------LLSIPVLGYELEALNEQDNFKY  269 (305)
Q Consensus       208 ~~~~~~G~L~~~~----------~~~wkrrw~vL~~~~L~~y~~~~d~~p--------~~~i~L~~~~v~~~~~~~~~~~  269 (305)
                      .++.+.|||+++.          .+.|+++||||+++.|+||+++.+..+        .+.|+|.++.+....+...++|
T Consensus         6 ~~v~k~G~L~rK~~~~~~gkk~~~~~Wk~rw~vL~~~~L~~yk~~~~~~~~~~~~~~~~~~i~L~~~~v~~~~d~~kr~~   85 (122)
T 1dro_A            6 AGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIASDYTKKKH   85 (122)
T ss_dssp             SSSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCSSCCCEECCSSSSSTT
T ss_pred             CceEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEeCCcccccCCCcccCCCceEECCCCEEEeCCCCCCCCe
Confidence            4567999998764          468999999999999999999886543        3678998888777655557789


Q ss_pred             eEEEEeCCceeEEEEcCCHHHHHHHHHHHHHHHcC
Q psy2207         270 VFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL  304 (305)
Q Consensus       270 ~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~~  304 (305)
                      +|+|.+.+.+.|+|+|+|++++++||.+|+.|+..
T Consensus        86 ~F~l~t~~~~~~lfqA~s~~e~~~Wi~ai~~~i~~  120 (122)
T 1dro_A           86 VLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSDS  120 (122)
T ss_dssp             EEEEECSSSCEEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred             EEEEEEcCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            99999777788999999999999999999988753

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*

Probab=99.73  E-value=3.4e-17  Score=134.48  Aligned_cols=94  Identities=19%  Similarity=0.238  Sum_probs=76.5

Q ss_pred             CCceeeeeeecc-------CCCceEEEEEEECCEEEEEcc----CccCccceEEEecCeEEE-Ec---ccc-CCc-----
Q psy2207         209 GSQHSGWLHKKS-------GRNWKRYWFVLKDQVMYKYKA----SEDIKALLSIPVLGYELE-AL---NEQ-DNF-----  267 (305)
Q Consensus       209 ~~~~~G~L~~~~-------~~~wkrrw~vL~~~~L~~y~~----~~d~~p~~~i~L~~~~v~-~~---~~~-~~~-----  267 (305)
                      .++++|||.|++       .+.|++|||||++..|+||++    ..+..|.|.|+|.++.++ ..   ++. ...     
T Consensus         2 ~vikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~~~~~~~~~~~G~I~L~~~~~ve~~~~~~~~~~~~~~~~~   81 (169)
T 1btk_A            2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRR   81 (169)
T ss_dssp             CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---
T ss_pred             ceEEEEEEEEecCCCCCcccCCCceEEEEEcCCEEEEEecCCccCCCCceeeEEECcceEEEEeccCCCCcchhcccccc
Confidence            357999999976       257999999999999999998    577899999999987654 22   111 111     


Q ss_pred             ----------------ceeEEEEeCCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         268 ----------------KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       268 ----------------~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                                      +++|+|++++ ++|+|.|+|++++++||++|+.++.
T Consensus        82 ~~~~~~~~~~~i~~~~~~~F~I~t~~-rt~yl~A~s~~E~~eWi~aI~~~i~  132 (169)
T 1btk_A           82 GEESSEMEQISIIERFPYPFQVVYDE-GPLYVFSPTEELRKRWIHQLKNVIR  132 (169)
T ss_dssp             ------CCTTHHHHCCCEEEEEEETT-CCEEEEESCHHHHHHHHHHHHHHHT
T ss_pred             cCcccccccccccccccccEEEEeCC-ceEEEEcCCHHHHHHHHHHHHHHHH
Confidence                            1899999765 5799999999999999999998875

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A

Probab=99.72  E-value=3.5e-17  Score=134.29  Aligned_cols=95  Identities=24%  Similarity=0.511  Sum_probs=70.0

Q ss_pred             CCceeeeee----------ecc--CCCceEEEEEEECCEEEEEccCcc--CccceEEEecC--eEEEEccccCCcceeEE
Q psy2207         209 GSQHSGWLH----------KKS--GRNWKRYWFVLKDQVMYKYKASED--IKALLSIPVLG--YELEALNEQDNFKYVFQ  272 (305)
Q Consensus       209 ~~~~~G~L~----------~~~--~~~wkrrw~vL~~~~L~~y~~~~d--~~p~~~i~L~~--~~v~~~~~~~~~~~~F~  272 (305)
                      ++.++|||+          +++  .+.|++|||||+++.|+||+++.+  ..+.+.|+|..  +.+.+......++++|+
T Consensus         2 dv~~eG~L~~k~~~~~~gkK~g~~~k~WkkRwfvL~~~~L~yyk~~~~~~~~~~g~i~l~~~~~~~~~~~~~~~~~~~F~   81 (168)
T 2j59_M            2 DAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLIDISYSETKRKNVFR   81 (168)
T ss_dssp             -CCEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC--------CEECSSCEEEECSSSCSCSSEEE
T ss_pred             CCcEEEEEeeeeecccCCcccCCCCCCceEEEEEEeCCEEEEEECCcccccccCCceEecccceEEEeccccCCCCCEEE
Confidence            357999999          443  678999999999999999999865  67888888865  66655555556789999


Q ss_pred             EEeCCceeEEEEcCCHHHHHHHHHHHHHHHcC
Q psy2207         273 LKHQGQDPLVFGADNEQSYERWMKAMREATTL  304 (305)
Q Consensus       273 l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~~  304 (305)
                      |.+.+ +.|+|+|+|++++++||.+|+.|+..
T Consensus        82 I~t~~-r~~~l~A~s~~e~~~Wi~ai~~~~~~  112 (168)
T 2j59_M           82 LTTSD-CECLFQAEDRDDMLAWIKTIQESSNL  112 (168)
T ss_dssp             EECSS-CEEEEECSSHHHHHHHHHHHHHHCCC
T ss_pred             EEeCC-ceEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            99766 68999999999999999999988653

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.72  E-value=2.5e-17  Score=127.54  Aligned_cols=94  Identities=20%  Similarity=0.409  Sum_probs=82.1

Q ss_pred             Cceeeeeeecc-----CCCceEEEEEEECCEEEEEccCccC--ccceEEEecCeEEEEccccCCcceeEEEEeC---Cce
Q psy2207         210 SQHSGWLHKKS-----GRNWKRYWFVLKDQVMYKYKASEDI--KALLSIPVLGYELEALNEQDNFKYVFQLKHQ---GQD  279 (305)
Q Consensus       210 ~~~~G~L~~~~-----~~~wkrrw~vL~~~~L~~y~~~~d~--~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~---~~~  279 (305)
                      +.+++||...+     .+.|++|||+|++..|+||++..+.  .|.+.|+|.||+|.++......+|.|+|..+   +.+
T Consensus         9 pel~~~l~~~~pkk~tlK~~KrrWFvlk~~~L~YyK~kee~~~ePig~I~L~gceV~pd~~~~~~kf~ikl~iPs~~g~r   88 (137)
T 2ys3_A            9 PELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGCEVVPDVNVSGQKFCIKLLVPSPEGMS   88 (137)
T ss_dssp             CCEECCCEECCTTSCCSSSSCCCEEEECSSCEEEESSTTTTTSCCSCCBCTTTCEEEECCBGGGTBEEEEEEEECSSSEE
T ss_pred             cchhHHHHhhCccccccccceeEEEEEeCCEEEEECCchhccCCCceEEECCCCEEeccccccCCceEEEEEccCCCCce
Confidence            46889998876     5689999999999999999998886  8999999999999988655567788888754   558


Q ss_pred             eEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         280 PLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       280 ~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      .|+|.|+|++++.+||+||+.|+.
T Consensus        89 ~y~l~cdsEeqy~~WMaA~rlAsk  112 (137)
T 2ys3_A           89 EIYLRCQDEQQYARWMAGCRLASK  112 (137)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCHHHHHHHHHHHHHhcc
Confidence            899999999999999999999975

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=8.2e-17  Score=123.49  Aligned_cols=90  Identities=23%  Similarity=0.416  Sum_probs=75.3

Q ss_pred             CCceeeeeeecc--C-CCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEc
Q psy2207         209 GSQHSGWLHKKS--G-RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGA  285 (305)
Q Consensus       209 ~~~~~G~L~~~~--~-~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a  285 (305)
                      .++++|||++++  . +.|++|||||+++.|+||+++.+ .+.+.|.|.++.|.+.+   ..+++|+|.. ..++|+|+|
T Consensus         9 ~~~~~G~L~K~~~~~~k~WkkR~fvL~~~~L~yyk~~~~-~~~~~i~l~~~~v~~~~---~~~~~F~I~~-~~r~~~l~a   83 (114)
T 2da0_A            9 GSEKKGYLLKKSDGIRKVWQRRKCSVKNGILTISHATSN-RQPAKLNLLTCQVKPNA---EDKKSFDLIS-HNRTYHFQA   83 (114)
T ss_dssp             CSCEEEEEEEECSSSCCCEEEEEEEEETTEEEECCSSCC-SCCEEEETTTSEEEECS---SSSSCEEEEE-TTEEEEEEC
T ss_pred             CccEEEEEEEeCCCCCCCceeEEEEEeCCEEEEEcCCCC-CCCCEEEeeeeEEEECC---CCCCEEEEEc-CCcEEEEEc
Confidence            457999999998  3 89999999999999999999765 56677878777776432   3468999985 467899999


Q ss_pred             CCHHHHHHHHHHHHHHHc
Q psy2207         286 DNEQSYERWMKAMREATT  303 (305)
Q Consensus       286 ~s~e~~~~Wi~al~~a~~  303 (305)
                      +|+++++.||.+|+.|..
T Consensus        84 ~s~~e~~~Wi~al~~~~~  101 (114)
T 2da0_A           84 EDEQDYVAWISVLTNSKE  101 (114)
T ss_dssp             SSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            999999999999998763

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}

Probab=99.71  E-value=9.7e-17  Score=131.14  Aligned_cols=96  Identities=24%  Similarity=0.286  Sum_probs=77.0

Q ss_pred             CCCCceeeeeeecc-------CCCceEEEEEEECCEEEEEccCcc-CccceEEEecCeEEE-Ecccc-----CCcceeEE
Q psy2207         207 DSGSQHSGWLHKKS-------GRNWKRYWFVLKDQVMYKYKASED-IKALLSIPVLGYELE-ALNEQ-----DNFKYVFQ  272 (305)
Q Consensus       207 ~~~~~~~G~L~~~~-------~~~wkrrw~vL~~~~L~~y~~~~d-~~p~~~i~L~~~~v~-~~~~~-----~~~~~~F~  272 (305)
                      ..+++++|||.|++       .+.|++|||||+++.|+||+++.+ ..+.|.|+|.++.++ .....     ....+.|+
T Consensus        12 ~~~~i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~~~L~Yyk~~~~~~~~~G~I~L~~~~~v~~~~~~~~~~~~~~~~~f~   91 (164)
T 2lul_A           12 NFNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYRKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQ   91 (164)
T ss_dssp             CSSEEEEEEEEEECCCCSSSCCCCEEEEEEEEESSEEEEECCCSSSCCCCCEEEGGGCCEEEECCCCSSSCCSSSCSEEE
T ss_pred             CCCeeEEEEEEEecCCCCCCCCCCceeEEEEEECCEEEEEeccCcccccccEEEEeeeEEEEeccccccCcccccceeEE
Confidence            34578999999987       236999999999999999998765 457899999776544 22221     23568999


Q ss_pred             EEeCCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         273 LKHQGQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       273 l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      |.++ .++|+|.|+|++++++||+||+++++
T Consensus        92 i~t~-~rt~~l~A~s~~e~~~Wi~aL~~~i~  121 (164)
T 2lul_A           92 VVHD-ANTLYIFAPSPQSRDLWVKKLKEEIK  121 (164)
T ss_dssp             EECS-SCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             EecC-CcEEEEECCCHHHHHHHHHHHHHHHH
Confidence            9865 46799999999999999999999875

>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}

Probab=99.70  E-value=2e-17  Score=147.41  Aligned_cols=96  Identities=19%  Similarity=0.207  Sum_probs=78.0

Q ss_pred             CCCCceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEe---cCeEEEEcccc-----CCcceeEEEEeC
Q psy2207         207 DSGSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPV---LGYELEALNEQ-----DNFKYVFQLKHQ  276 (305)
Q Consensus       207 ~~~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L---~~~~v~~~~~~-----~~~~~~F~l~~~  276 (305)
                      ...+.++|||++++  .+.|++|||||+++.|+||+++.+..|.+.|+|   .++.|......     ..++|+|.|.++
T Consensus       165 ~~~p~~~G~L~k~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~~~~~i~l~~l~~~~v~~~~~~~~~~~~~~~~~F~i~~~  244 (291)
T 3tca_A          165 IIVPELEGALYLKEDGKKSWKRRYFLLRASGIYYVPKGKTKTSRDLACFIQFENVNIYYGIQCKMKYKAPTDHCFVLKHP  244 (291)
T ss_dssp             CCCCCCEEEEEEECTTSSCEEEEEEEECSSEEEECCTTCCSSTTTCEEEEEGGGCEEEEECSHHHHHCCSSSCEEEEECT
T ss_pred             CCCCceEEEEEEeCCCCCCceEEEEEEeCCEEEEEecCccccccCceeeccceeEEEEecCccccccCCCCCeEEEEEcC
Confidence            34567999999998  778999999999999999999999888888777   34555443221     245699999875


Q ss_pred             C-----ceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         277 G-----QDPLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       277 ~-----~~~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      +     .++|+|+|+|++++..||.||+.|.
T Consensus       245 ~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak  275 (291)
T 3tca_A          245 QIQKESQYIKYLCCDDARTLSQWVMGIRIAK  275 (291)
T ss_dssp             TCCSCCTTSEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence            3     3569999999999999999998774

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A

Probab=99.70  E-value=1.5e-16  Score=139.60  Aligned_cols=96  Identities=24%  Similarity=0.479  Sum_probs=80.2

Q ss_pred             CCCceeeeee--------ecc------CCCceEEEEEEECCEEEEEccC------ccCccceEEEecCeEEEEccccCCc
Q psy2207         208 SGSQHSGWLH--------KKS------GRNWKRYWFVLKDQVMYKYKAS------EDIKALLSIPVLGYELEALNEQDNF  267 (305)
Q Consensus       208 ~~~~~~G~L~--------~~~------~~~wkrrw~vL~~~~L~~y~~~------~d~~p~~~i~L~~~~v~~~~~~~~~  267 (305)
                      ..++++|||+        +.+      .+.|++|||||+++.|+||+++      .+..|.+.|+|.++.|....+...+
T Consensus         9 ~~v~K~G~L~~k~~~~~~K~g~~~~~~~K~WkrRWfVL~~~~L~yyK~~~~~~~~~~~~p~g~I~L~~~~v~~~~~~~kk   88 (263)
T 3a8p_A            9 GVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAEDSIVQSVPEHPKK   88 (263)
T ss_dssp             -CEEEEEEEEEEEEEEEEGGGEEEECTTCCCEEEEEEEETTEEEEESSCCC------CCCSEEEECTTCEEEECTTCSSC
T ss_pred             CCeEEEEEeeecccccccCCCCccCccCCCceEEEEEEcCCEEEEEecCcccccccccCccceEEcCCcEEEECCcCCCC
Confidence            4468999999        343      3589999999999999999984      4678999999999988865555567


Q ss_pred             ceeEEEEeCCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         268 KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       268 ~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      +++|+|.+.+.++|+|+|+|+++++.||.+|+.|+.
T Consensus        89 ~~~F~I~t~~~r~y~f~A~s~ee~~~Wi~aI~~a~~  124 (263)
T 3a8p_A           89 EHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACA  124 (263)
T ss_dssp             SSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            899999976778899999999999999999998764

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}

Probab=99.68  E-value=2.3e-16  Score=123.55  Aligned_cols=94  Identities=13%  Similarity=0.276  Sum_probs=69.7

Q ss_pred             Cceeeeeeec-c---CCCceEEEEEEEC-CEEEEEccCcc---CccceEEEecCeEEEEcc-------------------
Q psy2207         210 SQHSGWLHKK-S---GRNWKRYWFVLKD-QVMYKYKASED---IKALLSIPVLGYELEALN-------------------  262 (305)
Q Consensus       210 ~~~~G~L~~~-~---~~~wkrrw~vL~~-~~L~~y~~~~d---~~p~~~i~L~~~~v~~~~-------------------  262 (305)
                      ++++|||+|+ +   .+.|++|||||.+ +.|+||++..+   ....+.|+|..+.+..+.                   
T Consensus         4 ~~k~G~L~K~~g~~~~k~WkkRwFvL~~~~~l~Y~~~~~d~~~~~~~~~i~l~~~~~~~~~~~i~l~~~~~~~~~~~~~~   83 (128)
T 2rlo_A            4 PIKQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISAFGPSASGSAG   83 (128)
T ss_dssp             EEEEEEEEEECSCSTTCCEEEEEEEEETTTEEEEESSHHHHHHTCSCEEEESSSCEEECSSCCCCCSSCCCSCCSCCCCS
T ss_pred             ceeEEEEEEecCCCccCCccEEEEEEeCCCEEEEecchhhhccccCCCeeeeeeeEEecCCCcccccccccccccccccc
Confidence            4799999999 4   4789999999996 78999976332   112234555444443221                   


Q ss_pred             ccCCcceeEEEEeCCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         263 EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       263 ~~~~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      ..+..+++|.|.+++.++|+|+|+|++++++||+||+.++.
T Consensus        84 ~~~~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i~  124 (128)
T 2rlo_A           84 QAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQIL  124 (128)
T ss_dssp             SCCCCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             ccccCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            01246789999987768899999999999999999998875

>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1

Probab=99.67  E-value=1.6e-17  Score=126.77  Aligned_cols=63  Identities=24%  Similarity=0.522  Sum_probs=44.8

Q ss_pred             CCCCeeeecCCCcccccccccccccccccccccccceeccCccCCeecccCCCCccccccHhhHHHHHhc
Q psy2207          73 KVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQE  142 (305)
Q Consensus        73 ~~~p~w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~~~  142 (305)
                      ...+.|.||+....|+.|+.+|++++||||||+||.+||+.||.++++       ++|||+.||..+...
T Consensus         8 ~~~~~~~Pd~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~-------~vRVC~~C~~~~~~~   70 (120)
T 1y02_A            8 GYSSFPSPTGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGN-------GPRLCLLCQRFRATA   70 (120)
T ss_dssp             ------------CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----------CCEEHHHHHHHHTT
T ss_pred             CcccCCcCccccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCC-------CceECHHHHHHHhcc
Confidence            345678899999999999999999999999999999999999999875       399999999987653

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*

Probab=99.66  E-value=6.3e-16  Score=141.04  Aligned_cols=94  Identities=23%  Similarity=0.527  Sum_probs=82.9

Q ss_pred             CCceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCC---------
Q psy2207         209 GSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQG---------  277 (305)
Q Consensus       209 ~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~---------  277 (305)
                      ++.++|||++++  .+.|++|||||+++.|+||+++.+..|.|.|+|.++.|...+. ..++++|+|.+++         
T Consensus       212 ~~~k~G~L~K~g~~~k~WkkRwFVL~~~~L~Yyk~~~~~~p~G~I~L~~~~v~~~~~-~~~~~~F~I~~~~~~~~~~~~~  290 (347)
T 2r09_A          212 NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVED-PRKPNCFELYNPSHKGQVIKAC  290 (347)
T ss_dssp             CCCEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEEECC-SSCSSEEEEECSSSTTCCCCCE
T ss_pred             ccccCCeeEecCCCcccceeEEEEEcCCEEEEEcCCCccCCcEEEEcCCeEEEEccC-CCCCCEEEEEeCCccccccccc
Confidence            458999999998  6799999999999999999999999999999999998876543 4677999998653         


Q ss_pred             ------------ceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         278 ------------QDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       278 ------------~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                                  .++|+|+|+|++++++||.+|+.|+.
T Consensus       291 k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~  328 (347)
T 2r09_A          291 KTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASIS  328 (347)
T ss_dssp             EECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence                        47899999999999999999998864

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=99.66  E-value=5.9e-16  Score=133.22  Aligned_cols=95  Identities=19%  Similarity=0.417  Sum_probs=82.5

Q ss_pred             CCCCCceeeeeeecc--C-----CCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCCc
Q psy2207         206 NDSGSQHSGWLHKKS--G-----RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQ  278 (305)
Q Consensus       206 ~~~~~~~~G~L~~~~--~-----~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~  278 (305)
                      ..++++++|||++++  .     +.|++|||||+++.|+||+++.+..|.+.|+|.++.+.....  .++++|+|.+ ..
T Consensus        54 ~~~~~~k~G~L~K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk~~~~~~~~g~I~L~~~~~v~~~~--~k~~~F~I~t-~~  130 (228)
T 3tfm_A           54 SKQEALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKLKGTVEVRSAKEIIDNT--NKENGIDIIM-AD  130 (228)
T ss_dssp             SCCCSSEEEEEEECGGGCSSSCGGGCEEEEEEECSSEEEEESSTTCCSEEEEEEGGGCSEEEEET--TTTSEEEEEC-SS
T ss_pred             cCCCcceEEEEEEECCCcCCcccCCceEEEEEEeCCEEEEEeCCCCcceeEEEEcCCCEEeccCC--CCCcEEEEEc-CC
Confidence            345678999999998  3     789999999999999999999999999999998887754432  4578999975 55


Q ss_pred             eeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         279 DPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       279 ~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      ++|+|+|+|++++++|+++|+.++.
T Consensus       131 r~~~l~A~s~~e~~~Wv~aL~~~i~  155 (228)
T 3tfm_A          131 RTFHLIAESPEDASQWFSVLSQVHS  155 (228)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             cEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            7899999999999999999998875

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*

Probab=99.65  E-value=1.5e-15  Score=120.22  Aligned_cols=93  Identities=24%  Similarity=0.429  Sum_probs=81.2

Q ss_pred             ceeeeeeecc-----CCCceEEEEEEECCEEEEEccCcc--CccceEEEecCeEEEEccccCCcceeEEEEeC---Ccee
Q psy2207         211 QHSGWLHKKS-----GRNWKRYWFVLKDQVMYKYKASED--IKALLSIPVLGYELEALNEQDNFKYVFQLKHQ---GQDP  280 (305)
Q Consensus       211 ~~~G~L~~~~-----~~~wkrrw~vL~~~~L~~y~~~~d--~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~---~~~~  280 (305)
                      .+++||....     .+.|+++|||+++..|+||+++++  ..|.+.|+|.||+|.++......+|.++|..+   +...
T Consensus        48 eL~dyLk~~~pk~~tLKgyKryWFv~kd~~LsyYKskEe~~geP~~~I~LrGCEVtpDVnva~~Kf~IkL~vP~~~gm~e  127 (173)
T 4f7h_A           48 ELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEESSGTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVAEGMNE  127 (173)
T ss_dssp             CEEEEEEEECCBTTBCCCCEEEEEEEETTEEEEESCGGGCSSCCSEEEECTTCEEEEEEETTTTEEEEEEEEEETTEEEE
T ss_pred             hhHhHHHhhcchhcccccceeEEEEEeCCEEEEEcCHhHhcCCCceEEecCceEEeccccccccceeEEEeccCCCCcce
Confidence            5889997654     789999999999999999999888  67999999999999987655567777887654   6778


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         281 LVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       281 ~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      ++++|++++++.+||.|++.|++
T Consensus       128 ~~Lrcd~E~qya~WMAAcrLAsk  150 (173)
T 4f7h_A          128 IWLRCDNEKQYAHWMAACRLASK  150 (173)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHT
T ss_pred             eeeecCCHHHHHHHHHHhhhhcc
Confidence            99999999999999999999875

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*

Probab=99.64  E-value=8.7e-16  Score=134.67  Aligned_cols=93  Identities=19%  Similarity=0.301  Sum_probs=77.1

Q ss_pred             CCCCceeeeeeeccCCCceEEEEEEECC-------EEEEEccCcc-----CccceEEEecCeEEEEccccCCcceeEEEE
Q psy2207         207 DSGSQHSGWLHKKSGRNWKRYWFVLKDQ-------VMYKYKASED-----IKALLSIPVLGYELEALNEQDNFKYVFQLK  274 (305)
Q Consensus       207 ~~~~~~~G~L~~~~~~~wkrrw~vL~~~-------~L~~y~~~~d-----~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~  274 (305)
                      ...++++|||+|+  +.|++|||||++.       .|+||+++.+     ..|.+.|+|.++..+........+++|.|.
T Consensus         7 ~~~v~k~G~L~K~--K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~~~~p~g~I~L~~~~~V~~~~~~~~~~~F~I~   84 (264)
T 1qqg_A            7 FSDVRKVGYLRKP--KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRADSKNKHLVALY   84 (264)
T ss_dssp             --CEEEEEEEECT--TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEECCSSCSSEEEEE
T ss_pred             CCCccEEEEEEEC--CCCEeEEEEEECCCCCCCCCEEEEECCCccccccccCcceEEEeeceEEEEeccCCCCCcEEEEE
Confidence            3456899999987  7999999999987       9999999887     689999999887643222234567999999


Q ss_pred             eCCceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         275 HQGQDPLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       275 ~~~~~~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      ++ .++|+|.|+|+++++.||.+|+.+.
T Consensus        85 t~-~rty~l~A~se~e~~~Wi~aL~~~~  111 (264)
T 1qqg_A           85 TR-DEHFAIAADSEAEQDSWYQALLQLH  111 (264)
T ss_dssp             ES-SCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             EC-CEEEEEEeCCHHHHHHHHHHHHHHH
Confidence            65 6789999999999999999998764

>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}

Probab=99.63  E-value=3.5e-15  Score=116.91  Aligned_cols=94  Identities=24%  Similarity=0.397  Sum_probs=80.0

Q ss_pred             Cceeeeeeecc-----CCCceEEEEEEECCEEEEEccCcc--CccceEEEecCeEEEEccccCCcceeEEEEeC---Cce
Q psy2207         210 SQHSGWLHKKS-----GRNWKRYWFVLKDQVMYKYKASED--IKALLSIPVLGYELEALNEQDNFKYVFQLKHQ---GQD  279 (305)
Q Consensus       210 ~~~~G~L~~~~-----~~~wkrrw~vL~~~~L~~y~~~~d--~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~---~~~  279 (305)
                      +.+++||....     .+.||++|||+++..|+||+++++  ..|.+.|+|.||+|.++......+|.|+|..+   +..
T Consensus        26 PeL~dyLk~~~pkrltLKgfKryWfv~kDt~LsyYKSkEe~~geP~~~inLrGCEVtPDVnva~~Kf~ikL~ip~~~gm~  105 (165)
T 4bbk_A           26 PKLADYLKLFRPKKLMLKACKQYWFVFKDTSIAYFKNKELEQGEPIEKLNLRGCEIVPDVNVSGRKFGIKLLIPVADGMN  105 (165)
T ss_dssp             CCEEEEEEEEC-------CCEEEEEEEETTEEEEESSGGGTTSCCSEEEECTTCEEEEEEETTTTEEEEEEEEEETTEEE
T ss_pred             hhhHhHHHhhcccccccccceeEEEEEeCCEEEEEcCHHHhcCCCceEEecCccEEecccccccceeeEEEecCCCCcce
Confidence            35889997755     789999999999999999999887  67999999999999987655567788888654   566


Q ss_pred             eEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         280 PLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       280 ~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      .++|+|+|+++..+||.|++.|++
T Consensus       106 e~~LrcdsE~QYa~WMAAcrLAsk  129 (165)
T 4bbk_A          106 EVYLRCDHEDQYARWMAACILASK  129 (165)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHHT
T ss_pred             eeeeecCCHHHHHHHHHHhhhccc
Confidence            899999999999999999999875

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=99.62  E-value=2.4e-15  Score=139.30  Aligned_cols=95  Identities=14%  Similarity=0.383  Sum_probs=79.8

Q ss_pred             CCCCceeeeeeecc-C----CCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCCc-ee
Q psy2207         207 DSGSQHSGWLHKKS-G----RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQ-DP  280 (305)
Q Consensus       207 ~~~~~~~G~L~~~~-~----~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~-~~  280 (305)
                      ...++++|||++++ .    +.|++|||||+++.|+||+. .+..+.+.|+|.++.|...+. ..++|+|+|.++.+ ++
T Consensus       275 ~~~~~k~G~L~K~~~~~~~~~~WkkRwfvL~~~~L~y~k~-~~~~~~~~i~l~~~~v~~~~~-~~r~~~F~i~t~~~~~~  352 (385)
T 2q13_A          275 RNLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQAR-GDVAGGLAMDIDNCSVMAVDC-EDRRYCFQITSFDGKKS  352 (385)
T ss_dssp             CCCSCCEEEEEEC--------CCEEEEEEEETTEEEEECS-SCSSCEEEEECTTCEEEEECC-TTCSSEEEEECTTSCBC
T ss_pred             CCCccEEEEEEEecCCCCCcCCceeEEEEEECCEEEEecC-CCcCCCceEEccceEEEeccc-cCCCceEEEEeCCCCeE
Confidence            34578999999987 2    35999999999999999998 567788999999999876643 46679999997664 78


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         281 LVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       281 ~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      |+|+|+|+++++.||.||+.++.
T Consensus       353 ~~l~A~s~~e~~~Wi~ai~~~~~  375 (385)
T 2q13_A          353 SILQAESKKDHEEWICTINNISK  375 (385)
T ss_dssp             CCEECSSHHHHHHHHHHHHHHHT
T ss_pred             EEEEeCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999998764

>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1

Probab=99.58  E-value=2.5e-14  Score=112.87  Aligned_cols=95  Identities=21%  Similarity=0.373  Sum_probs=77.8

Q ss_pred             ceeeeeeecc--CCCceEEEEEEECCEEEEEccCc----------------------------------cCcc-------
Q psy2207         211 QHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASE----------------------------------DIKA-------  247 (305)
Q Consensus       211 ~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~----------------------------------d~~p-------  247 (305)
                      ++.|||++++  .+.|.++||||.+..|||++...                                  +..|       
T Consensus         2 ~k~G~L~~~~~~~~~w~~~~fvL~~~~L~y~~e~s~~~~~~~~e~~~~~~~~~~~~~~~n~~fh~~~~~~~e~~~~~l~E   81 (150)
T 2fjl_A            2 IKNGILYLEDPVNHEWYPHYFVLTSSKIYYSEETSSDQGNEDEEEPKEASGSTELHSSLEVLFQGPNPAILEPEREHLDE   81 (150)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEETTEEEECCCCSCSSCCSCCCCSCCCCCSCCCCCCSSSGGGSSCSTTSCTTCSSSCT
T ss_pred             CcceEEEeecCCCCCceEeEEEEECCEEEEEeeccccccccCcccccccCCchhhcccchhccccCCccccchhHhcccc
Confidence            5789999998  88999999999999999988111                                  0111       


Q ss_pred             --------ceEEEecCeEEEEccc-cCCcceeEEEEeCC--ceeEEEEcCCHHHHHHHHHHHHHHHcCC
Q psy2207         248 --------LLSIPVLGYELEALNE-QDNFKYVFQLKHQG--QDPLVFGADNEQSYERWMKAMREATTLS  305 (305)
Q Consensus       248 --------~~~i~L~~~~v~~~~~-~~~~~~~F~l~~~~--~~~~~f~a~s~e~~~~Wi~al~~a~~~s  305 (305)
                              .|.|+|.||.|...+. ...++|+|+|.+++  .+.|.|+|+|.++|..||++|+.|+.-+
T Consensus        82 ~~~lG~l~kG~IdL~gc~V~~~~~~~~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa~~a  150 (150)
T 2fjl_A           82 NSPLGDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQTA  150 (150)
T ss_dssp             TTTTTTCCCEEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHTTC
T ss_pred             cccccccccceEecCccEEEeccCCCCCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Confidence                    6999999999986553 34678999998753  4579999999999999999999998643

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=99.57  E-value=6.6e-15  Score=137.33  Aligned_cols=95  Identities=16%  Similarity=0.362  Sum_probs=79.9

Q ss_pred             CCCCceeeeeeecc-----CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCC-cee
Q psy2207         207 DSGSQHSGWLHKKS-----GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQG-QDP  280 (305)
Q Consensus       207 ~~~~~~~G~L~~~~-----~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~-~~~  280 (305)
                      ...+.+.|||+++.     .+.|+||||||+++.|+||+... ..+.+.|+|.+|.|...+.. .++|+|+|.+++ .++
T Consensus       298 ~~~~~k~G~L~k~~~~g~~~~~W~rrwfvl~~~~l~y~~~~~-~~~~~~~~l~~~~v~~~~~~-~r~~cF~i~~~~~~~~  375 (407)
T 4h8s_A          298 RNLIQKAGYLNLRNKTGLVTTTWERLYFFTQGGNLMCQPRGA-VAGGLIQDLDNCSVMAVDCE-DRRYCFQITTPNGKSG  375 (407)
T ss_dssp             CSCSCCEEEEEEEEECSSSCEEEEEEEEEECSSCEECCCTTC-SSCCCCBCSSCCEEEEECCT-TCSSEEEEECTTSSCC
T ss_pred             CCcceeeceeeeeccCCCCCCCceEEEEEEECCEEEEEeCCC-CCCCeEEECCceEEEECCCC-CCCceEEEEecCCCce
Confidence            34467999999873     46799999999999999998654 46778899999999876543 567999999765 468


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         281 LVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       281 ~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      |+|+|+|++++..||.||+.|+.
T Consensus       376 ~~l~A~s~~e~~~Wi~ai~~a~~  398 (407)
T 4h8s_A          376 IILQAESRKENEEWICAINNISR  398 (407)
T ss_dssp             EEEECSSSHHHHHHHHHHHHHHS
T ss_pred             EEEEcCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999998875

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}

Probab=99.53  E-value=1.2e-14  Score=127.32  Aligned_cols=96  Identities=24%  Similarity=0.452  Sum_probs=80.4

Q ss_pred             CCCceeeeeeecc--------------CCCceEEEEEEECCEEEEEccCcc------CccceEEEecCeEEEEccccCCc
Q psy2207         208 SGSQHSGWLHKKS--------------GRNWKRYWFVLKDQVMYKYKASED------IKALLSIPVLGYELEALNEQDNF  267 (305)
Q Consensus       208 ~~~~~~G~L~~~~--------------~~~wkrrw~vL~~~~L~~y~~~~d------~~p~~~i~L~~~~v~~~~~~~~~  267 (305)
                      +.+.+.|||.++.              .+.|+++||||++..|+||+++..      ..|.+.|+|.++.+....+...+
T Consensus         9 ~~v~k~G~L~rK~~l~~~k~~K~~~~~~r~Wkk~w~VLkg~~L~fYKde~~~~~~~~~~p~~~I~L~ga~v~~a~d~~kK   88 (279)
T 3a8n_A            9 GTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQAVPEHPKK   88 (279)
T ss_dssp             -CCSCEEEEEEEEEEEEETTTEEECCCCCCCEEEEEEEETTEECCBCCC--------CCCSSCCBCCSCEECCCTTSSSS
T ss_pred             CceeEEEEEEEEEEecccCCcccCCccCCCCeEEEEEEeCCEEEEEecccccccccccCCCceEeccCcEEEeccccCCC
Confidence            4457999997542              368999999999999999998753      35788899999999866666677


Q ss_pred             ceeEEEEeCCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         268 KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       268 ~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      +++|+|.+.+...|+|+|++.++|+.|+.+|..|+.
T Consensus        89 k~vF~L~t~~g~~yLFQA~s~eEm~~WI~aI~~a~~  124 (279)
T 3a8n_A           89 DFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACA  124 (279)
T ss_dssp             CSCCCEEETTTEEEECCCSCHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHh
Confidence            899999988888999999999999999999987764

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=99.49  E-value=1.3e-13  Score=105.90  Aligned_cols=93  Identities=12%  Similarity=0.410  Sum_probs=72.6

Q ss_pred             ceeeeeee--cc--CC-CceEEEEEEECCEEEEEccCccC---ccceEEEecCe-EEEEccc-------cCCcceeEEEE
Q psy2207         211 QHSGWLHK--KS--GR-NWKRYWFVLKDQVMYKYKASEDI---KALLSIPVLGY-ELEALNE-------QDNFKYVFQLK  274 (305)
Q Consensus       211 ~~~G~L~~--~~--~~-~wkrrw~vL~~~~L~~y~~~~d~---~p~~~i~L~~~-~v~~~~~-------~~~~~~~F~l~  274 (305)
                      .++|||.+  ++  .+ .|++|||||.+..|+||+.+.+.   .|.+.|+|... .|....+       ....++.|+|.
T Consensus         2 ~~eGwl~~pk~~~~~k~~Wkkr~~vL~~~kL~~y~~~~~~~~~~p~~~Idl~~~~~V~~V~~~d~i~~~~~~~p~iF~I~   81 (117)
T 2rov_A            2 RLEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRPVTQTDVYRADAKEIPRIFQIL   81 (117)
T ss_dssp             CSEEEEECCCCSSSSCCCCCEEEEEEETTEEEEESCHHHHHTTCCSEEECGGGEEEEEECCTTTCSSSCTTTGGGEEEEE
T ss_pred             ceEEEEEeecCCCccCCCcEEEEEEEECCEEEEEECCCCcccCCceEEEECcccEEEEEcccccccccccccCCcEEEEE
Confidence            37899986  43  56 89999999999999999987654   78999999543 3333222       12356899998


Q ss_pred             eC-----CceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         275 HQ-----GQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       275 ~~-----~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      ..     ..++++|.|+|++++++|+.+|++++.
T Consensus        82 ~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~i~  115 (117)
T 2rov_A           82 YANEGISSAKNLLLLANSTEEQQKWVSRLVKKIP  115 (117)
T ss_dssp             ECSSSSTTCEEEEEECSSHHHHHHHHHHHHHHCT
T ss_pred             eCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHhc
Confidence            63     357899999999999999999998764

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A

Probab=99.48  E-value=5.7e-14  Score=130.94  Aligned_cols=92  Identities=12%  Similarity=0.283  Sum_probs=79.2

Q ss_pred             CCCceEEEEE--eceEEEEEeCCHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcccCcCCCCCeeeecCCCccc
Q psy2207          10 DYNNEFSVIA--ISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSIPELNLGKVAPLWIPDSRVSMC   87 (305)
Q Consensus        10 ~~~~~f~i~~--~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~d~~~~~C   87 (305)
                      ..+|.|.|..  +.++|.|+|+|++||+.|+++|++++.+......                ......+.|.++...+.|
T Consensus       297 ~~~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~~~~----------------~~~~h~f~~~~~~~~t~C  360 (406)
T 2vrw_B          297 KWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIYPENA----------------TANGHDFQMFSFEETTSC  360 (406)
T ss_dssp             TTCEEEEEEETTCSCEEEEEESSHHHHHHHHHHHHHHHHHHSCTTT----------------TGGGCCEEEECCSSCCBC
T ss_pred             ccceeeEEEecCCCceEEEeCCCHHHHHHHHHHHHHHHhhhhhccc----------------cCCCCCCccccCCCCCCC
Confidence            4679999997  5789999999999999999999999987543211                123457899999999999


Q ss_pred             cccccccc-ccccccccccccceeccCccCC
Q psy2207          88 QRCTSVFT-VTFRRHHCRACGKVVCGPCSDY  117 (305)
Q Consensus        88 ~~C~~~f~-~~~rrhhCr~cg~v~C~~Cs~~  117 (305)
                      +.|+..|. +++++|||+.||.++|+.|+..
T Consensus       361 ~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~  391 (406)
T 2vrw_B          361 KACQMLLRGTFYQGYRCYRCRAPAHKECLGR  391 (406)
T ss_dssp             TTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred             ccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence            99999994 8999999999999999999974

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}

Probab=99.35  E-value=8.6e-12  Score=108.10  Aligned_cols=95  Identities=19%  Similarity=0.287  Sum_probs=75.5

Q ss_pred             CCCceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceE---EEecCeEEEEcccc-----CCcceeEEEEeCC
Q psy2207         208 SGSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLS---IPVLGYELEALNEQ-----DNFKYVFQLKHQG  277 (305)
Q Consensus       208 ~~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~---i~L~~~~v~~~~~~-----~~~~~~F~l~~~~  277 (305)
                      ..+.+.|||++++  .+.|++|||+|+++.||||+......+...   ++|.++.|......     .-.+++|.|.+..
T Consensus       130 ~~P~~~G~L~~ke~~~K~WkkRyfvLr~sgLy~~~k~~sk~~r~l~~~~~L~~~~vy~~~~~kKk~kaPt~~~F~ik~~k  209 (256)
T 3hk0_A          130 SSPEIQGFLHVKELGKKSWKKLYVCLRRSGLYCSTKGTSAAPRHLQLLADLEDSNIFSLIAGRKQYNAPTDHGLCIKPNK  209 (256)
T ss_dssp             SCEEEEEEEEEECTTSSCEEEEEEEEETTEEEEESSTTCCCGGGEEEEECCTTEEEEEESSTHHHHCCSSSEEEEEEETT
T ss_pred             CCCcceeEEEEecCCCCcceEEEEEEeCCEEEEEecCCCCccccceEEEEcCCCEEEEecccccccCCCCCCEEEEEccc
Confidence            3457999999987  789999999999999999997765555444   68899888765422     1236999998643


Q ss_pred             c-----eeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         278 Q-----DPLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       278 ~-----~~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      .     ..++|+|+|++++..|+.||+.|.
T Consensus       210 ~~~~~~~~~~lcaede~~~~~W~~aIr~ak  239 (256)
T 3hk0_A          210 VRNETKELRLLCAEDEQTRTSWMTAFRLLK  239 (256)
T ss_dssp             CSSCCTTCEEEEESSHHHHHHHHHHHHHHH
T ss_pred             ccCCCceEEEEEeCCHHHHHHHHHHHHHHH
Confidence            2     269999999999999999998773

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=2.4e-11  Score=92.17  Aligned_cols=96  Identities=16%  Similarity=0.211  Sum_probs=73.2

Q ss_pred             ccCCCCCceeeeeeecc----CCCceEEEEEEEC------CEEEEEccCccC----ccceEEEecCeEEE-Ecccc---C
Q psy2207         204 TANDSGSQHSGWLHKKS----GRNWKRYWFVLKD------QVMYKYKASEDI----KALLSIPVLGYELE-ALNEQ---D  265 (305)
Q Consensus       204 ~~~~~~~~~~G~L~~~~----~~~wkrrw~vL~~------~~L~~y~~~~d~----~p~~~i~L~~~~v~-~~~~~---~  265 (305)
                      +...+++++.|||+.+.    ++.|+|+||||.+      ..|-+|.+++..    .+..+|.|..|.-+ +...+   .
T Consensus         6 ~~m~e~~vk~G~L~~q~q~~fgkKWrk~w~vLy~~S~~GvaRLE~yd~~ek~~r~~~~rrVIrLsdCisV~~~~~e~~~p   85 (127)
T 2d9w_A            6 SGMGDGAVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLSDCLRVAEAGGEASSP   85 (127)
T ss_dssp             CCSCCCSSEEEEEEECBCSSSSCBCCEEEEEEECCSSSSCCEEEEECCCSCSSSCSCCEEEECGGGEEEEEECCSCSSSC
T ss_pred             ccccCccccceEEEecccchhhhhhheeEEEEecCCCCCceeeeeeeccCccccCCCCceEEEhhhCCeEecccCccCCC
Confidence            34566778999999886    5679999999963      589999987652    57889999876554 43332   2


Q ss_pred             CcceeEEEEeCCceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207         266 NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA  301 (305)
Q Consensus       266 ~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a  301 (305)
                      ...+.|.|.+++ ++|.|+|++. ++..||.+|-+.
T Consensus        86 k~~~aF~l~T~e-r~~~laAe~~-E~~~Wi~~ic~~  119 (127)
T 2d9w_A           86 RDTSAFFLETKE-RLYLLAAPAA-ERGDWVQAICLL  119 (127)
T ss_dssp             SSCEEEEEEESS-CEEEEEECHH-HHHHHHHHHHHH
T ss_pred             CcceEEEEEeCC-cEEEEEeCcH-HHHHHHHHHHHH
Confidence            445899998554 6899999965 899999999654

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=99.31  E-value=9.9e-12  Score=108.97  Aligned_cols=95  Identities=18%  Similarity=0.312  Sum_probs=70.0

Q ss_pred             CCCceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCcc---ceEEEecCeEEEEccc-----cCCcceeEEEEeCC
Q psy2207         208 SGSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKA---LLSIPVLGYELEALNE-----QDNFKYVFQLKHQG  277 (305)
Q Consensus       208 ~~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p---~~~i~L~~~~v~~~~~-----~~~~~~~F~l~~~~  277 (305)
                      ..+.+.|||++++  .+.|++|||+|+++.||||....+..+   .+.++|.++.|.....     ..-.+|+|.|.++.
T Consensus       156 ~~pe~~G~L~~k~~~~k~WkkRyfvLr~sgLyy~~K~~sk~~r~l~~l~~L~~~~VY~~~~~kkk~kaPt~~~F~ik~~~  235 (281)
T 4gmv_A          156 TVPEIEGVLWLKDDGKKSWKKRYFLLRASGIYYVPKGKAKVSRDLVCFLQLDHVNVYYGQDYRNKYKAPTDYCLVLKHPQ  235 (281)
T ss_dssp             CCCCCEEEEEEECTTSSCEEEEEEEECSSCEEEC---------CCEEEECGGGCEEEEESSHHHHTCCSCSCEEEEECTT
T ss_pred             CCCccEEEEEEECCCCCCCeEEEEEEeCCEEEEEeCCCCCccccceEEEEcCCcEEEEecccccccCCCCCcEEEEecCc
Confidence            4457999999987  789999999999999999887655444   4556888888875432     12346999999642


Q ss_pred             -----ceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         278 -----QDPLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       278 -----~~~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                           ...|+|+|+|++++..||.||+.|.
T Consensus       236 ~~~~~~~~~~~caede~~~~~Wv~Air~ak  265 (281)
T 4gmv_A          236 IQKKSQYIKYLCCDDVRTLHQWVNGIRIAK  265 (281)
T ss_dssp             CCSCCTTCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cCCCCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence                 3479999999999999999998763

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.23  E-value=1.2e-11  Score=116.21  Aligned_cols=92  Identities=20%  Similarity=0.423  Sum_probs=69.5

Q ss_pred             CCceeeeeeecc--CCCceEEEEEEE-CCEEEEEccCccCccceEEEecCeEE-----EEccccCCcceeEEEEeCCcee
Q psy2207         209 GSQHSGWLHKKS--GRNWKRYWFVLK-DQVMYKYKASEDIKALLSIPVLGYEL-----EALNEQDNFKYVFQLKHQGQDP  280 (305)
Q Consensus       209 ~~~~~G~L~~~~--~~~wkrrw~vL~-~~~L~~y~~~~d~~p~~~i~L~~~~v-----~~~~~~~~~~~~F~l~~~~~~~  280 (305)
                      .++++|||.|++  .+.|++|||||+ ++.|+||+.+.+..+.+.|+|.++.+     ...+  ..++++|.|.......
T Consensus         5 ~v~keG~L~K~g~~~k~Wk~r~fvL~~~~~l~yyk~~~~~~~~~~i~l~~~~~~~~~~~~~~--~~~~~~f~I~~~~~~~   82 (446)
T 4ejn_A            5 AIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTE--RPRPNTFIIRCLQWTT   82 (446)
T ss_dssp             CEEEEEEEEEEETTTTEEEEEEEEEETTSBEEEESSCC-------CCCGGGBCTTCEEEEEC--SSSTTEEEEEEEETTE
T ss_pred             eEEEEeeEEeeccccccccceEEEEeeCCEEEEEecCCCCCccCcccccCccccceeecCCC--CCCCceeEEEcCCCce
Confidence            467899999998  789999999997 89999999999988889999976443     2222  3456899998655554


Q ss_pred             E---EEEcCCHHHHHHHHHHHHHHH
Q psy2207         281 L---VFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       281 ~---~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      +   .|.+++.++++.|+.||+.++
T Consensus        83 ~~~r~~~~~~~ee~e~W~~ai~~~i  107 (446)
T 4ejn_A           83 VIERTFHVETPEEREEWTTAIQTVA  107 (446)
T ss_dssp             EEEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             eeeeEEecCCHHHHHHHHHHHHhhh
Confidence            4   799999999999999999874

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=99.19  E-value=2.3e-11  Score=118.51  Aligned_cols=94  Identities=12%  Similarity=0.291  Sum_probs=78.0

Q ss_pred             CcCCCceEEEEEec--eEEEEEeCCHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcccCcCCCCCeeeecCCCc
Q psy2207           8 TEDYNNEFSVIAIS--RSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSIPELNLGKVAPLWIPDSRVS   85 (305)
Q Consensus         8 ~~~~~~~f~i~~~~--ksf~~~a~s~~ek~~W~~~i~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~d~~~~   85 (305)
                      +..++|+|.|.+..  ++|.|+|.|++||+.|+++|+++|........                ........|.+....+
T Consensus       467 ~~~~~~~f~i~~~~~~~~~~L~A~S~eeK~~Wi~~I~~ai~~~~~~~~----------------~~~~H~F~~~~~~~~t  530 (587)
T 3ky9_A          467 NKKWSHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISNIYPENA----------------TANGHDFQMFSFEETT  530 (587)
T ss_dssp             CCTTCEEEEEEETTC---CEEEESSHHHHHHHHHHHHHHHHHHSCTTT----------------TGGGCCEEEECCSSCC
T ss_pred             cccccceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHHhhhhccccc----------------cccCCceeEEeCCCCc
Confidence            34588999999976  89999999999999999999999987543211                1234566788889999


Q ss_pred             ccccccccc-cccccccccccccceeccCccCC
Q psy2207          86 MCQRCTSVF-TVTFRRHHCRACGKVVCGPCSDY  117 (305)
Q Consensus        86 ~C~~C~~~f-~~~~rrhhCr~cg~v~C~~Cs~~  117 (305)
                      .|+.|+..| +++.+.|||+.||.++|.+|+..
T Consensus       531 ~C~~C~~~l~gl~~qg~~C~~C~~~vHk~C~~~  563 (587)
T 3ky9_A          531 SCKACQMLLRGTFYQGYRCHRCRASAHKECLGR  563 (587)
T ss_dssp             BCTTTCSBCCSSSCCEEEETTTCCEECSGGGGG
T ss_pred             ccccccccccccccCCcCCCCCCCccchhhhhc
Confidence            999999988 78999999999999999999986

>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A

Probab=99.12  E-value=2.4e-10  Score=90.04  Aligned_cols=91  Identities=15%  Similarity=0.129  Sum_probs=75.0

Q ss_pred             CCCCCceeeeeeeccCCCceEEEEEEECCEEEEEccCccCccceEEEecC-eEEEEccccCCcceeEEEEeCCceeEEEE
Q psy2207         206 NDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLG-YELEALNEQDNFKYVFQLKHQGQDPLVFG  284 (305)
Q Consensus       206 ~~~~~~~~G~L~~~~~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~-~~v~~~~~~~~~~~~F~l~~~~~~~~~f~  284 (305)
                      ..+.+++.|||.++.+-.|++|||+|++...+||-++......|.|+|.. +.|.....     ..|.|..++ ++|+|.
T Consensus        48 ~ge~Ilk~G~v~KrkGl~~kkR~liLT~~PrL~Yvdp~~~~~KGeIpls~~l~ve~k~~-----~~F~I~Tp~-RtY~~~  121 (151)
T 1w1g_A           48 ENNLILKMGPVDKRKGLFARRRQLLLTEGPHLYYVDPVNKVLKGEIPWSQELRPEAKNF-----KTFFVHTPN-RTYYLM  121 (151)
T ss_dssp             TTCCEEEEEEEEEEETTEEEEEEEEEETTTEEEEEETTTTEEEEEECCCTTCEEEESSS-----SEEEEEETT-EEEEEE
T ss_pred             CCCcEEEEEEEEecccCcceeEEEEEcCCceEEEEcCccccccceEecCCCeeEEEcCC-----CEEEEECCC-ceEEEE
Confidence            45668999999996545599999999998888999998888999999954 55655432     289998776 889999


Q ss_pred             cCCHHHHHHHHHHHHHHHc
Q psy2207         285 ADNEQSYERWMKAMREATT  303 (305)
Q Consensus       285 a~s~e~~~~Wi~al~~a~~  303 (305)
                      +. ...+++|++||+.+..
T Consensus       122 d~-~~~AqeWv~aI~~~~~  139 (151)
T 1w1g_A          122 DP-SGNAHKWCRKIQEVWR  139 (151)
T ss_dssp             CT-TSCHHHHHHHHHHHHH
T ss_pred             cC-ccCHHHHHHHHHHHHH
Confidence            87 8899999999998865

>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.92  E-value=1.7e-08  Score=76.40  Aligned_cols=95  Identities=17%  Similarity=0.283  Sum_probs=75.3

Q ss_pred             CCCceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEE-Eccc-----cCCcceeEEEEeCCce
Q psy2207         208 SGSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELE-ALNE-----QDNFKYVFQLKHQGQD  279 (305)
Q Consensus       208 ~~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~-~~~~-----~~~~~~~F~l~~~~~~  279 (305)
                      ..++.+||+-+..  ...|||+|+.|....+.+|+++.+..+...|+|..+..+ ....     ....+|+|+|.+ ...
T Consensus         6 s~vlkeGW~VH~t~~d~~rKRHYWrLD~K~Itlf~~e~~~~~ykeIpL~eIl~v~~~~~~~~l~~~~~~hcFEi~T-~~~   84 (125)
T 2coa_A            6 SGTLREGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTNRYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVT-ANA   84 (125)
T ss_dssp             CSCSEEEEEEECCSSSCCCEEEEEEECSSEEEEESSSSCSSCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEEC-SSC
T ss_pred             CceeecceEEEEccCCccccceeeEecCCeEEEEecCCCCceeeeeehhHeecccccccccccCCCCCCceEEEEe-CCe
Confidence            3458999997776  678999999999999999999999999999999765444 3321     123569999985 556


Q ss_pred             eEEEEcC-----------CHHHHHHHHHHHHHHHc
Q psy2207         280 PLVFGAD-----------NEQSYERWMKAMREATT  303 (305)
Q Consensus       280 ~~~f~a~-----------s~e~~~~Wi~al~~a~~  303 (305)
                      +|+.+++           ..+.++.|..||+.|.+
T Consensus        85 ~yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrqALm  119 (125)
T 2coa_A           85 TYFVGEMPGGTPGGPSGQGAEAARGWETAIRQALM  119 (125)
T ss_dssp             CCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHGG
T ss_pred             EEEEccCCCCCCCCcCccccHHHHHHHHHHHhhcc
Confidence            7888763           13779999999999975

>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.83  E-value=4.7e-08  Score=74.26  Aligned_cols=94  Identities=19%  Similarity=0.292  Sum_probs=74.9

Q ss_pred             CCceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccc------cCCcceeEEEEeCCcee
Q psy2207         209 GSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE------QDNFKYVFQLKHQGQDP  280 (305)
Q Consensus       209 ~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~------~~~~~~~F~l~~~~~~~  280 (305)
                      .++.+||+-+..  ...|+|+|+.|....+.+|+++.+..+...|+|..+..+....      ....+|+|+|.+ ...+
T Consensus         7 ~vlkeGWmVH~t~~d~~rKRHYWrLD~K~Itlf~~e~~~k~ykeIpLseIL~v~~~~~~~~~~~~~~phcFEi~T-~~~~   85 (129)
T 2d9z_A            7 GMVKEGWMVHYTSRDNLRKRHYWRLDSKCLTLFQNESGSKYYKEIPLSEILRISSPRDFTNISQGSNPHCFEIIT-DTMV   85 (129)
T ss_dssp             TSEEEEEEEEEESSCCCCEEEEEEEESSCEEEESCSSCCSCCCEECTTTCCEECCTTCCCCSSSCSCCCSEEEEC-SSCE
T ss_pred             ceeecceEEEEccCCccccceeeEecCCeEEEEecCCCCceeceeeHHHhcccccccCccccCCCCCCceEEEEE-CCEE
Confidence            457899987666  6689999999999999999999999999999998765553321      123459999985 5567


Q ss_pred             EEEEcCC---------------HHHHHHHHHHHHHHHc
Q psy2207         281 LVFGADN---------------EQSYERWMKAMREATT  303 (305)
Q Consensus       281 ~~f~a~s---------------~e~~~~Wi~al~~a~~  303 (305)
                      |+.+++.               .+.++.|..||+.|.+
T Consensus        86 y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqALm  123 (129)
T 2d9z_A           86 YFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQALM  123 (129)
T ss_dssp             EEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHHH
T ss_pred             EEEccCCCCCCCCccccccccchHHHHHHHHHHHHhcc
Confidence            8877643               7999999999999975

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=98.54  E-value=3e-07  Score=78.64  Aligned_cols=38  Identities=21%  Similarity=0.446  Sum_probs=35.2

Q ss_pred             cCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207           9 EDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus         9 ~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      ...+++|.|.++.|+|.|+|+|++|+++|+++|+.++.
T Consensus       118 ~~k~~~F~I~t~~r~~~l~A~s~~e~~~Wv~aL~~~i~  155 (228)
T 3tfm_A          118 TNKENGIDIIMADRTFHLIAESPEDASQWFSVLSQVHS  155 (228)
T ss_dssp             TTTTSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             CCCCcEEEEEcCCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            35678999999999999999999999999999999885

>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.42  E-value=1.7e-06  Score=65.85  Aligned_cols=82  Identities=13%  Similarity=0.285  Sum_probs=65.4

Q ss_pred             CCCceEEEEEEE-----C-CEEEEEccCccCccceEEEecCe-EEEE--ccccCCcceeEEEEeCCceeEEEEcCCHHHH
Q psy2207         221 GRNWKRYWFVLK-----D-QVMYKYKASEDIKALLSIPVLGY-ELEA--LNEQDNFKYVFQLKHQGQDPLVFGADNEQSY  291 (305)
Q Consensus       221 ~~~wkrrw~vL~-----~-~~L~~y~~~~d~~p~~~i~L~~~-~v~~--~~~~~~~~~~F~l~~~~~~~~~f~a~s~e~~  291 (305)
                      ...|.+.|++|+     + ..|-||..++..+|...|++..+ .|..  .-+-.+..++|.|...+...|+|.|.++.++
T Consensus        39 ~~~W~k~RLvL~k~g~G~~y~LEfy~PPkssKpK~~i~cs~I~EVR~tt~LEmPD~~nTFVlK~~n~~eyi~ea~d~~q~  118 (136)
T 1v5m_A           39 TAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSIPLSAIIEVRTTMPLEMPEKDNTFVLKVENGAEYILETIDSLQK  118 (136)
T ss_dssp             SCCCEEEEEEEEECSSSCCEEEEEESSTTSSSCSSCEETTTCCBCCCCCCSSSCCCTTEECCBCTTSCBEEEECSSHHHH
T ss_pred             ccchhheeeEEEEccCCCceEEEEecCCcccCCccccchhhhhhhhhccccccCCccceEEEEecCCcEEEEEcCCHHHH
Confidence            458999999995     2 58999999999999999999654 2221  1122456789999988877899999999999


Q ss_pred             HHHHHHHHHHH
Q psy2207         292 ERWMKAMREAT  302 (305)
Q Consensus       292 ~~Wi~al~~a~  302 (305)
                      +.|+..|+...
T Consensus       119 ~sWla~Ir~C~  129 (136)
T 1v5m_A          119 HSWVADIQGCV  129 (136)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhhc
Confidence            99999998654

>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*

Probab=98.40  E-value=6e-07  Score=68.00  Aligned_cols=46  Identities=13%  Similarity=0.354  Sum_probs=42.0

Q ss_pred             cCCCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHHh
Q psy2207           5 LPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQ   50 (305)
Q Consensus         5 ~~~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~   50 (305)
                      .++++.++|+|.|.+.+++|.++|+|++||.+|+++|++|+.+...
T Consensus        66 ~~d~~~~~n~f~i~~~~~s~~~~aes~~eK~~Wl~~~~~a~~~~~~  111 (113)
T 1zc3_B           66 VKDNPPMKDMFKLLMFPESRIFQAENAKIKREWLEVLEETKRALSD  111 (113)
T ss_dssp             ECCBTTBSSEEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcccceEEEEEeCCceEEEEcCCHHHHHHHHHHHHHHHHHHhh
Confidence            4777889999999999999999999999999999999999977543

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}

Probab=98.36  E-value=5.5e-07  Score=69.71  Aligned_cols=40  Identities=28%  Similarity=0.496  Sum_probs=36.8

Q ss_pred             CCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAIKENE   49 (305)
Q Consensus        10 ~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ai~~~~   49 (305)
                      +.+++|.|.+++ |+|.|+|+|++|+++||++|+.+|....
T Consensus        87 ~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i~~~l  127 (128)
T 2rlo_A           87 EENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQILASL  127 (128)
T ss_dssp             CCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHHHHc
Confidence            567999999998 9999999999999999999999998654

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.35  E-value=1.5e-06  Score=67.34  Aligned_cols=97  Identities=16%  Similarity=0.301  Sum_probs=68.2

Q ss_pred             CCceeeeeeecc--CCCceEEEEEEECCEEEEEcc-Cc--cCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEE
Q psy2207         209 GSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKA-SE--DIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVF  283 (305)
Q Consensus       209 ~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~-~~--d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f  283 (305)
                      ++++.+-+..+.  .+.-+.|+++|=++.|.|.+. ..  ...-.|.+||.+..|...++....+|+|+|.......+.|
T Consensus        27 ~ii~~s~v~~~~~~~~~~~eR~l~LF~~~Ll~~s~~~~~~~f~~kgklPL~g~~V~~~ed~~~~~~aFeI~g~~~~~i~v  106 (132)
T 1v61_A           27 NVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMVVNRLDEIEGSDCMFEITGSTVERIVV  106 (132)
T ss_dssp             CCSCEEEEEBCCSSSSCCCEEEEEECSSCEEEEECSSSSSCCEEEEEECTTTCBCSTTCSSSSSCCCEEEECSSSCEEEE
T ss_pred             CeEEEeeEEEEEcccCcceEEEEEEcCCeEEEEEecCCCceEEEEEEEecceeEEEeccccccCccEEEEecCCCceEEE
Confidence            344555544443  233356667775655555543 32  2345689999999887655545678999999665467999


Q ss_pred             EcCCHHHHHHHHHHHHHHHcCC
Q psy2207         284 GADNEQSYERWMKAMREATTLS  305 (305)
Q Consensus       284 ~a~s~e~~~~Wi~al~~a~~~s  305 (305)
                      .|.|.+|+++||++|++++..+
T Consensus       107 ~~~s~eE~~~Wl~~L~~~i~~~  128 (132)
T 1v61_A          107 HCNNNQDFQEWMEQLNRLTKSG  128 (132)
T ss_dssp             CCCCSHHHHHHHHHHHHHHTTS
T ss_pred             EeCCHHHHHHHHHHHHHHHhhc
Confidence            9999999999999999998754

>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}

Probab=98.33  E-value=1e-06  Score=68.59  Aligned_cols=50  Identities=20%  Similarity=0.341  Sum_probs=45.6

Q ss_pred             CeeecCCCcCCCceEEEEEe------ceEEEEEeCCHHHHHHHHHHHHHHHHHHHh
Q psy2207           1 MKVCLPQTEDYNNEFSVIAI------SRSFTLRARSANERLEWIDAIQTAIKENEQ   50 (305)
Q Consensus         1 m~v~~~~~~~~~~~f~i~~~------~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~   50 (305)
                      |+|....++.++|+|.|.+.      ++++.|.|+|++||..|+++|+++|++..+
T Consensus        71 m~V~~~e~e~~p~~~~l~s~~~G~~~k~~i~~~A~s~~ER~rwi~dL~esI~e~~e  126 (140)
T 3qwm_A           71 MQVLLFENQYYPNGIRLTSSVPGADIKVLINFNAPNPQDRKKFTDDLRESIAEVQE  126 (140)
T ss_dssp             EEEEEECCSSCTTEEEEEECCTTSCCEEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEcccCCCCceEEEEEecCCCCcceEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999985      378999999999999999999999988543

>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}

Probab=98.32  E-value=7.5e-06  Score=68.17  Aligned_cols=92  Identities=18%  Similarity=0.351  Sum_probs=69.3

Q ss_pred             CCceeeeeeeccCCCceEEEEEEEC------C-EEEEEccCcc----CccceEEEecCeEEE-EccccCCcceeEEEEeC
Q psy2207         209 GSQHSGWLHKKSGRNWKRYWFVLKD------Q-VMYKYKASED----IKALLSIPVLGYELE-ALNEQDNFKYVFQLKHQ  276 (305)
Q Consensus       209 ~~~~~G~L~~~~~~~wkrrw~vL~~------~-~L~~y~~~~d----~~p~~~i~L~~~~v~-~~~~~~~~~~~F~l~~~  276 (305)
                      .++++|++..+.++.|+.||+||+.      . .|..|++..|    ..+..+|.|..+.-. ..-..++..+++.|+..
T Consensus         8 ~~v~eg~vk~r~~KkWk~rw~vlrk~s~~adcl~L~vYkd~~dr~k~~~~KaslsL~~~~GlE~g~~ldk~s~TlAIIc~   87 (224)
T 3ml4_A            8 AALVEGQVKLRDGKKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEPALPYEGLAHTLAIICL   87 (224)
T ss_dssp             CCSEEEEEEEC---CCEEEEEEEECSSTTSSCEEEEEESSSHHHHSCCCCSEEEEECCEEEEEEEEEETTEEEEEEEEES
T ss_pred             ceeEEEeeeeecCCceeeEEEEEEcCCCchheEEEEEEcChhhhhcCCcccceeehHHhcCccccccccCcccEEEEEec
Confidence            3578999988888899999999962      2 7899998776    456788999654333 22233566789999977


Q ss_pred             CceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207         277 GQDPLVFGADNEQSYERWMKAMREA  301 (305)
Q Consensus       277 ~~~~~~f~a~s~e~~~~Wi~al~~a  301 (305)
                      .. ++.|+.|+.+.+..|-..|+..
T Consensus        88 d~-~~vLAFds~e~l~~W~~~l~~s  111 (224)
T 3ml4_A           88 SQ-AVMLGFDSHEAMCAWDTRIRYA  111 (224)
T ss_dssp             SC-EEEEECSSHHHHHHHHHHHHHH
T ss_pred             Cc-EEEEEeCCHHHHHHHHHHHhhc
Confidence            66 5799999999999999988753

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}

Probab=98.32  E-value=6.7e-07  Score=72.43  Aligned_cols=40  Identities=23%  Similarity=0.395  Sum_probs=36.6

Q ss_pred             CCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENE   49 (305)
Q Consensus        10 ~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~   49 (305)
                      +.++.|+|.++.|+|.|+|+|++|+++||++|+++|....
T Consensus        85 ~~~~~f~i~t~~rt~~l~A~s~~e~~~Wi~aL~~~i~~n~  124 (164)
T 2lul_A           85 QNKYPFQVVHDANTLYIFAPSPQSRDLWVKKLKEEIKNNN  124 (164)
T ss_dssp             SSCSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHTTCS
T ss_pred             ccceeEEEecCCcEEEEECCCHHHHHHHHHHHHHHHHHCh
Confidence            4578999999999999999999999999999999997643

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.27  E-value=1.5e-06  Score=65.74  Aligned_cols=44  Identities=16%  Similarity=0.428  Sum_probs=39.3

Q ss_pred             cCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHHhcc
Q psy2207           9 EDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHL   52 (305)
Q Consensus         9 ~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~~~   52 (305)
                      ++.+++|.|.++.|+|.|+|+|++|+++||++|+.++....+..
T Consensus        64 ~~~~~~F~I~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~~  107 (114)
T 2da0_A           64 AEDKKSFDLISHNRTYHFQAEDEQDYVAWISVLTNSKEEALTMA  107 (114)
T ss_dssp             SSSSSCEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CCCCCEEEEEcCCcEEEEEcCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            34578999999999999999999999999999999998876543

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.20  E-value=2e-06  Score=64.17  Aligned_cols=44  Identities=18%  Similarity=0.251  Sum_probs=37.9

Q ss_pred             eecCCCcCCCceEEEEEe-ceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207           3 VCLPQTEDYNNEFSVIAI-SRSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus         3 v~~~~~~~~~~~f~i~~~-~ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      |....+.+.+++|.|.++ .|+|.|+|+|++|+++||++|+.++.
T Consensus        57 v~~~~~~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~~~~  101 (107)
T 2cof_A           57 VVPDPSPDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSESG  101 (107)
T ss_dssp             EECCCBTTBSCEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHSS
T ss_pred             EEECCCCCCCeEEEEEeCCCeEEEEEcCCHHHHHHHHHHHHHHHc
Confidence            444445677899999999 99999999999999999999998764

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}

Probab=98.20  E-value=7.6e-07  Score=64.81  Aligned_cols=38  Identities=26%  Similarity=0.445  Sum_probs=34.4

Q ss_pred             CcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207           8 TEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAI   45 (305)
Q Consensus         8 ~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai   45 (305)
                      .+..++.|.|.++.|+|.|.|+|++|+++||++||+|.
T Consensus        56 ~~~~~~~F~i~~~~r~~~l~A~s~~e~~~Wi~aLq~Ak   93 (94)
T 2rsg_A           56 HDFDECRFDISVNDSVWYLRAQDPDHRQQWIDAIEQHK   93 (94)
T ss_dssp             CSSCSSEEEEEETTEEEEEECCSSCCTHHHHHHHHHHC
T ss_pred             CcccceeEEEEeCCeEEEEECCCHHHHHHHHHHHHhhc
Confidence            44567899999999999999999999999999999873

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.16  E-value=5.8e-06  Score=65.50  Aligned_cols=44  Identities=23%  Similarity=0.282  Sum_probs=38.6

Q ss_pred             CCcCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHHHHHHHh
Q psy2207           7 QTEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAIKENEQ   50 (305)
Q Consensus         7 ~~~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ai~~~~~   50 (305)
                      .....+++|.|.+++ |+|.|+|+|++|+++||.+|+.++....+
T Consensus        84 ~~~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~ai~~~~~  128 (150)
T 1wg7_A           84 NNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLNFE  128 (150)
T ss_dssp             CCSSCTTEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHHHHHHHhhhH
Confidence            345678999999996 99999999999999999999999976544

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A

Probab=98.14  E-value=3.6e-06  Score=64.59  Aligned_cols=46  Identities=24%  Similarity=0.351  Sum_probs=40.1

Q ss_pred             eecCCCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy2207           3 VCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKEN   48 (305)
Q Consensus         3 v~~~~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~   48 (305)
                      |....+...+|+|.|.++.|+|.|.|+|++|+++|+++|+.+|...
T Consensus        69 v~~~~~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~  114 (126)
T 1fao_A           69 VQFDYSQERVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQI  114 (126)
T ss_dssp             EEEECSSSSSSEEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHTC
T ss_pred             EEecccCCCCCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence            3344456778999999999999999999999999999999999873

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.12  E-value=3.8e-06  Score=64.31  Aligned_cols=41  Identities=15%  Similarity=0.350  Sum_probs=37.1

Q ss_pred             CCcCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207           7 QTEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus         7 ~~~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      +..+.+|+|.|.++. |+|.|+|+|++|+++||++|+.++..
T Consensus        77 ~~~~r~~~F~i~~~~~~~~~f~A~s~~e~~~Wi~ai~~~~~~  118 (123)
T 1wjm_A           77 DYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIAS  118 (123)
T ss_dssp             TCSSCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCEEEEEEcCCcEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            346779999999887 99999999999999999999999875

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.11  E-value=4e-06  Score=65.01  Aligned_cols=40  Identities=15%  Similarity=0.252  Sum_probs=34.9

Q ss_pred             CCcCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207           7 QTEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus         7 ~~~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      +....++.|.|.+++ |+|.|+|+|++|+++||++|+.++.
T Consensus        74 ~~~~~~~~F~I~~~~~r~~~l~A~s~~e~~~Wi~al~~a~~  114 (130)
T 2d9v_A           74 EGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANS  114 (130)
T ss_dssp             SSCCTTTEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             CCCCcCcEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence            344567899999955 9999999999999999999999875

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.11  E-value=5.4e-06  Score=62.37  Aligned_cols=43  Identities=23%  Similarity=0.428  Sum_probs=38.7

Q ss_pred             CcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHHh
Q psy2207           8 TEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQ   50 (305)
Q Consensus         8 ~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~   50 (305)
                      .+..++.|.|.++.|+|.|+|+|++|+++|+++|+.++.....
T Consensus        65 ~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~~~  107 (115)
T 2dn6_A           65 KDGKKCLFLVKCFDKTFEISASDKKKKQEWIQAIHSTIHLLKL  107 (115)
T ss_dssp             CTTCCSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeeEEEEEeCCCEEEEEcCCHHHHHHHHHHHHHHHHHHhc
Confidence            4556789999999999999999999999999999999987654

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*

Probab=98.10  E-value=5e-06  Score=64.40  Aligned_cols=42  Identities=21%  Similarity=0.354  Sum_probs=37.3

Q ss_pred             CCcCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy2207           7 QTEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAIKEN   48 (305)
Q Consensus         7 ~~~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ai~~~   48 (305)
                      +..+.+|.|.|.+++ +.|.|+|+|++|+++||++|+.+|...
T Consensus        84 ~~~kr~~~F~l~t~~~~~yl~qA~s~~e~~~Wi~aI~~~i~~~  126 (129)
T 2p0d_A           84 HLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVIERL  126 (129)
T ss_dssp             TSCSSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            455678999999986 689999999999999999999999864

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1

Probab=98.09  E-value=4.1e-06  Score=62.09  Aligned_cols=42  Identities=21%  Similarity=0.447  Sum_probs=37.5

Q ss_pred             CCcCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy2207           7 QTEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAIKEN   48 (305)
Q Consensus         7 ~~~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ai~~~   48 (305)
                      .+...+++|.|.+++ |+|.|+|+|++|+++|+++|+.+|.+.
T Consensus        65 ~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~i~~l  107 (108)
T 1u5d_A           65 RDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFLLKDL  107 (108)
T ss_dssp             SSGGGGGEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCcceEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            344567999999998 999999999999999999999999763

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.06  E-value=3.4e-06  Score=64.32  Aligned_cols=43  Identities=28%  Similarity=0.550  Sum_probs=38.1

Q ss_pred             cCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHHHHHHHhc
Q psy2207           9 EDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAIKENEQH   51 (305)
Q Consensus         9 ~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ai~~~~~~   51 (305)
                      ++.++.|.|.+++ |+|.|.|+|++|+++||++|+.++......
T Consensus        66 ~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~~  109 (120)
T 2d9x_A           66 DEDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQICTQHHTEA  109 (120)
T ss_dssp             SSSSSCEEECCSSSCCEEECCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHHhhhh
Confidence            3557999999997 999999999999999999999999876543

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A

Probab=98.05  E-value=5.9e-06  Score=61.97  Aligned_cols=36  Identities=17%  Similarity=0.339  Sum_probs=32.7

Q ss_pred             CCceEEEEEe-ceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207          11 YNNEFSVIAI-SRSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus        11 ~~~~f~i~~~-~ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      .+++|.|.++ .|+|.|+|+|++|+++||++|++|+.
T Consensus        75 ~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~  111 (112)
T 3aj4_A           75 KDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSRT  111 (112)
T ss_dssp             GGGEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             cCcEEEEEecCCcEEEEEeCCHHHHHHHHHHHHHHhh
Confidence            3689999986 89999999999999999999998863

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B

Probab=98.04  E-value=6.2e-06  Score=62.20  Aligned_cols=42  Identities=29%  Similarity=0.445  Sum_probs=36.8

Q ss_pred             CCCcCCCceEEEEEe-ceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207           6 PQTEDYNNEFSVIAI-SRSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus         6 ~~~~~~~~~f~i~~~-~ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      .++.+.+|+|+|.++ .++|.|+|+|++|+++||++|+.++..
T Consensus        60 ~~~~~r~~~F~l~~~~~~~y~f~A~s~ee~~~Wi~ai~~~~~~  102 (112)
T 3cxb_B           60 ANTTDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVSK  102 (112)
T ss_dssp             CCCSSCTTEEEEEETTSCCEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             cCCCCCCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHhhc
Confidence            456677899999965 779999999999999999999988864

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*

Probab=98.03  E-value=4.1e-06  Score=68.09  Aligned_cols=35  Identities=17%  Similarity=0.327  Sum_probs=33.5

Q ss_pred             ceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207          13 NEFSVIAISRSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus        13 ~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      +.|+|++++|+|+|+|+|++|+++||++|+.+|..
T Consensus        99 ~~F~I~t~~rt~yl~A~s~~E~~eWi~aI~~~i~~  133 (169)
T 1btk_A           99 YPFQVVYDEGPLYVFSPTEELRKRWIHQLKNVIRY  133 (169)
T ss_dssp             EEEEEEETTCCEEEEESCHHHHHHHHHHHHHHHTT
T ss_pred             ccEEEEeCCceEEEEcCCHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999864

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.02  E-value=1.1e-05  Score=60.51  Aligned_cols=44  Identities=23%  Similarity=0.259  Sum_probs=38.4

Q ss_pred             CCCcCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy2207           6 PQTEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAIKENE   49 (305)
Q Consensus         6 ~~~~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ai~~~~   49 (305)
                      .+....+|+|.|.+++ |+|.|+|+|++|+++||++|+.++....
T Consensus        60 ~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~~  104 (113)
T 1pls_A           60 QDFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIKCIE  104 (113)
T ss_dssp             CSSCCSSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCCCccEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHhccc
Confidence            3445678899999987 9999999999999999999999998643

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.02  E-value=1.2e-05  Score=60.77  Aligned_cols=38  Identities=24%  Similarity=0.376  Sum_probs=34.6

Q ss_pred             cCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207           9 EDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus         9 ~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      .+.+++|+|..+.++|.|.|+|++++++||++|+.|+.
T Consensus        69 ~~~~~~Fki~~~~~~y~f~A~s~e~~~~Wl~al~~A~~  106 (112)
T 2coc_A           69 LDSGHVWKLQWAKQSWYLSASSAELQQQWLETLSTAAH  106 (112)
T ss_dssp             CSSSEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred             cCCCCEEEEecCCeEEEEEcCCHHHHHHHHHHHHHHhc
Confidence            34689999999999999999999999999999998764

>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*

Probab=98.02  E-value=8.3e-05  Score=56.08  Aligned_cols=91  Identities=15%  Similarity=0.217  Sum_probs=62.0

Q ss_pred             ceeeeeeeccC---CCceEEEEEE-ECCEEEEEccCcc---CccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEE
Q psy2207         211 QHSGWLHKKSG---RNWKRYWFVL-KDQVMYKYKASED---IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVF  283 (305)
Q Consensus       211 ~~~G~L~~~~~---~~wkrrw~vL-~~~~L~~y~~~~d---~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f  283 (305)
                      +..|.|.+...   +.-+++++.| .|..|+.......   ..-...++|.+..|.-.++....++.|.|... ...+.|
T Consensus         9 v~eG~l~el~~~~~k~~~~v~~FLfND~Ll~a~~~~~~~~~~~~~~~~~L~~~~v~d~~d~~~~~n~f~i~~~-~~s~~~   87 (113)
T 1zc3_B            9 VYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVKDNPPMKDMFKLLMF-PESRIF   87 (113)
T ss_dssp             EEEEEEEEEETTTCCEEEEEEEEEESSEEEEEEEECCTTSCEEEEEEEETTTCEEEEECCBTTBSSEEEEEET-TEEEEE
T ss_pred             EEeCcEEEEccccCCCCccEEEEecCCEEEEEEEeccCcccEEEEEEEEcccCEEEECCCCcccceEEEEEeC-CceEEE
Confidence            56788776652   2234455555 4544444442222   23344678888888755555567899999854 457999


Q ss_pred             EcCCHHHHHHHHHHHHHHH
Q psy2207         284 GADNEQSYERWMKAMREAT  302 (305)
Q Consensus       284 ~a~s~e~~~~Wi~al~~a~  302 (305)
                      +|+|.++..+|+.+|++|.
T Consensus        88 ~aes~~eK~~Wl~~~~~a~  106 (113)
T 1zc3_B           88 QAENAKIKREWLEVLEETK  106 (113)
T ss_dssp             ECSSHHHHHHHHHHHHHHH
T ss_pred             EcCCHHHHHHHHHHHHHHH
Confidence            9999999999999999886

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.01  E-value=5.6e-06  Score=63.93  Aligned_cols=39  Identities=23%  Similarity=0.422  Sum_probs=34.8

Q ss_pred             CcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207           8 TEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus         8 ~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      ..+.+++|.|.++.|+|.|+|+|++|+++||++|+.++.
T Consensus        82 ~~~~~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~a~~  120 (126)
T 1v5p_A           82 KPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASK  120 (126)
T ss_dssp             SCSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHTTT
T ss_pred             CCCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHh
Confidence            345678999999999999999999999999999998764

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=98.01  E-value=9.8e-06  Score=62.07  Aligned_cols=38  Identities=16%  Similarity=0.331  Sum_probs=35.3

Q ss_pred             cCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207           9 EDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus         9 ~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      ...++.|+|+++.++|.|+|+|++|+++||++|+.|+.
T Consensus        73 ~~~k~~F~~v~~~~ty~~~Adseee~~~WikAi~~A~~  110 (126)
T 1wi1_A           73 EGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATG  110 (126)
T ss_dssp             CSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             ccCceEEEEecCCceEEEEcCCHHHHHHHHHHHHHHhc
Confidence            45779999999999999999999999999999999885

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.99  E-value=7.4e-06  Score=62.35  Aligned_cols=42  Identities=24%  Similarity=0.332  Sum_probs=38.1

Q ss_pred             cCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHHh
Q psy2207           9 EDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQ   50 (305)
Q Consensus         9 ~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~   50 (305)
                      +..++.|.|.++.|+|.|.|+|++|+++||++|+.++.+...
T Consensus        67 ~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~~~~~~~  108 (119)
T 2dhk_A           67 DAEEGIFEIKTPSRVITLKAATKQAMLYWLQQLQMKRWEFHN  108 (119)
T ss_dssp             TGGGCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHHhcC
Confidence            455789999999999999999999999999999999987654

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A

Probab=97.98  E-value=6.4e-06  Score=60.99  Aligned_cols=38  Identities=21%  Similarity=0.397  Sum_probs=33.7

Q ss_pred             CCcCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHH
Q psy2207           7 QTEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTA   44 (305)
Q Consensus         7 ~~~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~a   44 (305)
                      +....+|+|.|.+++ |+|.|+|+|++|+++||++|+.|
T Consensus        68 ~~~~~~~~F~i~~~~~~~~~~~A~s~~e~~~Wi~ai~~A  106 (106)
T 1btn_A           68 DYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             SCCSSSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred             cccCCccEEEEEecCCCEEEEECCCHHHHHHHHHHHhcC
Confidence            445678999999876 99999999999999999999864

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1

Probab=97.96  E-value=5.6e-06  Score=62.49  Aligned_cols=39  Identities=26%  Similarity=0.456  Sum_probs=35.1

Q ss_pred             CcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207           8 TEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus         8 ~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      ....++.|.|.++.|+|.|.|+|++|+++||++|+.+|.
T Consensus        73 ~~~~~~~F~i~~~~r~~~l~a~s~~e~~~Wi~al~~~i~  111 (117)
T 1v5u_A           73 TVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLS  111 (117)
T ss_dssp             SSCTTTCEEEEESSCEEEEECSSHHHHHHHHHHHHTTCC
T ss_pred             cCCCCeEEEEECCCceEEEECCCHHHHHHHHHHHHHHhc
Confidence            345568999999999999999999999999999998774

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}

Probab=97.93  E-value=9.4e-06  Score=62.40  Aligned_cols=40  Identities=15%  Similarity=0.249  Sum_probs=36.0

Q ss_pred             CCcCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207           7 QTEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus         7 ~~~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      +....+|.|.|.+++ +.|.|+|+|++|+++|+.+|+.||.
T Consensus        83 d~~krk~vF~l~t~~~~~ylfqA~s~~e~~~Wi~aI~~aI~  123 (124)
T 3pp2_A           83 DKSSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGIQ  123 (124)
T ss_dssp             GGCSSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred             ccCCCceEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHh
Confidence            556779999999865 7999999999999999999999985

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.93  E-value=1.2e-05  Score=63.97  Aligned_cols=37  Identities=16%  Similarity=0.307  Sum_probs=34.0

Q ss_pred             CCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus        10 ~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      +..+.|.|.++.|+|.|+|+|++|+++||.+|+.++.
T Consensus        77 ~~~~~F~I~t~~r~~~f~A~s~ee~~eWi~aI~~v~~  113 (149)
T 1x1f_A           77 KNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTE  113 (149)
T ss_dssp             SCCCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CcCcEEEEEcCCCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence            3468999999999999999999999999999998775

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=97.93  E-value=8.1e-06  Score=63.24  Aligned_cols=47  Identities=15%  Similarity=0.295  Sum_probs=40.4

Q ss_pred             CeeecCC-CcCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207           1 MKVCLPQ-TEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus         1 m~v~~~~-~~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      |.|...+ .++++|+|+|.++. +++.|.|.|.+|++.|+++|+.+|+.
T Consensus        79 ~~V~~~ed~~~~~~aFeI~g~~~~~i~v~~~s~eE~~~Wl~~L~~~i~~  127 (132)
T 1v61_A           79 MVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKS  127 (132)
T ss_dssp             CBCSTTCSSSSSCCCEEEECSSSCEEEECCCCSHHHHHHHHHHHHHHTT
T ss_pred             eEEEeccccccCccEEEEecCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence            4555443 46799999999988 99999999999999999999998864

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1

Probab=97.92  E-value=1.1e-05  Score=61.64  Aligned_cols=39  Identities=15%  Similarity=0.271  Sum_probs=35.0

Q ss_pred             CcCCCceEEEEE-eceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207           8 TEDYNNEFSVIA-ISRSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus         8 ~~~~~~~f~i~~-~~ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      ..+.+|+|.|.+ +.++|.|+|+|++|+++||++|+.+|.
T Consensus        80 ~~kr~~~F~l~t~~~~~~lfqA~s~~e~~~Wi~ai~~~i~  119 (122)
T 1dro_A           80 YTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSD  119 (122)
T ss_dssp             SSSSTTEEEEECSSSCEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred             CCCCCeEEEEEEcCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence            346789999996 669999999999999999999999885

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=97.90  E-value=2.3e-05  Score=58.39  Aligned_cols=39  Identities=21%  Similarity=0.384  Sum_probs=33.8

Q ss_pred             CcCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207           8 TEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus         8 ~~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      ....+++|.|.++. |+|.|+|+|++|+++||++|+.|+.
T Consensus        64 ~~~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a~~  103 (109)
T 1wgq_A           64 ENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTV  103 (109)
T ss_dssp             SSCSSSEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHHS
T ss_pred             CCCCCcEEEEEeCCCeEEEEECCCHHHHHHHHHHHHHHhc
Confidence            34457999999885 7899999999999999999998864

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1

Probab=97.90  E-value=1.2e-05  Score=61.28  Aligned_cols=40  Identities=33%  Similarity=0.529  Sum_probs=36.8

Q ss_pred             CCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENE   49 (305)
Q Consensus        10 ~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~   49 (305)
                      ..+++|.|.++.|+|.|+|+|++|+++|+++|+.++....
T Consensus        75 ~~~~~F~i~~~~r~~~l~a~s~~e~~~W~~al~~~i~~~~  114 (125)
T 1eaz_A           75 MRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVAQR  114 (125)
T ss_dssp             TCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHHHTC
T ss_pred             CcCCEEEEEeCCcEEEEEcCCHHHHHHHHHHHHHHHHhcc
Confidence            4589999999999999999999999999999999997643

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}

Probab=97.89  E-value=1.8e-05  Score=60.75  Aligned_cols=46  Identities=17%  Similarity=0.294  Sum_probs=41.1

Q ss_pred             eeecCCCcCCCceEEEEEe--ceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207           2 KVCLPQTEDYNNEFSVIAI--SRSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus         2 ~v~~~~~~~~~~~f~i~~~--~ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      .|+.++++..+|+|+|.++  ...|.|+|+|++++++|+.+|..|+..
T Consensus        66 ~V~~~e~~~~~~~F~L~~~~~G~~Y~fqA~s~~~~~~W~~ai~~a~~~  113 (126)
T 2dtc_A           66 MVQLPDDPEHPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACKS  113 (126)
T ss_dssp             EEECCCCTTSTTEEEEECTTSCSEEEEECSSHHHHHHHHHHHHHHHTS
T ss_pred             EEEecCCCCCCCEEEEeeCCCCCEEEEeCCCHHHHHHHHHHHHHHHhc
Confidence            4667788889999999976  779999999999999999999999864

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*

Probab=97.89  E-value=1.9e-05  Score=60.28  Aligned_cols=45  Identities=22%  Similarity=0.341  Sum_probs=37.7

Q ss_pred             eecCCCcCCCceEEEEEec----------------------eEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207           3 VCLPQTEDYNNEFSVIAIS----------------------RSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus         3 v~~~~~~~~~~~f~i~~~~----------------------ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      |....+...+++|.|.++.                      |+|.|.|+|++|+++||++|+.+|..
T Consensus        55 v~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~  121 (127)
T 1fgy_A           55 IREVLDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISR  121 (127)
T ss_dssp             EEEECCSSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             EEEccCCCCCceEEEecCCccccccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhcc
Confidence            3334455778999998764                      89999999999999999999999975

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A

Probab=97.88  E-value=1e-05  Score=59.68  Aligned_cols=37  Identities=24%  Similarity=0.427  Sum_probs=34.0

Q ss_pred             CCceEEEEEe-ceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207          11 YNNEFSVIAI-SRSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus        11 ~~~~f~i~~~-~ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      .++.|.|.++ .|+|.|.|+|++|+++|+++|+.|+..
T Consensus        57 ~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~~   94 (103)
T 3rcp_A           57 DNTRMELIIPGEQHFYMKAVNAAERQRWLVALGSSKAS   94 (103)
T ss_dssp             CSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHTTSCC
T ss_pred             CCceEEEEeCCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            4789999998 899999999999999999999988754

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.87  E-value=2.2e-05  Score=59.13  Aligned_cols=39  Identities=26%  Similarity=0.337  Sum_probs=35.2

Q ss_pred             cCCCceEEEEE--------eceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207           9 EDYNNEFSVIA--------ISRSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus         9 ~~~~~~f~i~~--------~~ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      ...+++|.|.+        +.|+|.|.|+|++|+++||++|+.++..
T Consensus        67 ~~~~~~f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~  113 (118)
T 1v89_A           67 EAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGS  113 (118)
T ss_dssp             CCCCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHHC
T ss_pred             cCCcceEEEECCccccccCCCcEEEEECCCHHHHHHHHHHHHHHHcc
Confidence            34578999998        8899999999999999999999999864

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.85  E-value=1.8e-05  Score=59.60  Aligned_cols=37  Identities=32%  Similarity=0.715  Sum_probs=34.8

Q ss_pred             CceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy2207          12 NNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKEN   48 (305)
Q Consensus        12 ~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~   48 (305)
                      +++|.|.++.|+|.|.|+|++|+++||++|+.++...
T Consensus        65 ~~~F~i~~~~r~~~l~a~s~~e~~~Wi~~l~~~~~~~  101 (115)
T 2cod_A           65 DNKFEVVTTQRTFVFRVEKEEERNDWISILLNALKSQ  101 (115)
T ss_dssp             TTEEEEEESSCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence            6899999999999999999999999999999999653

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A

Probab=97.83  E-value=1.6e-05  Score=64.22  Aligned_cols=40  Identities=20%  Similarity=0.368  Sum_probs=36.1

Q ss_pred             CCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207           7 QTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus         7 ~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      +....+|+|.|.+++|+|.|+|+|++|+++||++|+.++.
T Consensus        72 ~~~~~~~~F~I~t~~r~~~l~A~s~~e~~~Wi~ai~~~~~  111 (168)
T 2j59_M           72 SETKRKNVFRLTTSDCECLFQAEDRDDMLAWIKTIQESSN  111 (168)
T ss_dssp             SSCSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred             ccCCCCCEEEEEeCCceEEEEcCCHHHHHHHHHHHHHHHh
Confidence            3456789999999999999999999999999999998864

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A

Probab=97.81  E-value=3.3e-05  Score=59.01  Aligned_cols=42  Identities=26%  Similarity=0.330  Sum_probs=36.9

Q ss_pred             cCCCceEEEEE----eceEEEEEeCCHHHHHHHHHHHHHHHHHHHh
Q psy2207           9 EDYNNEFSVIA----ISRSFTLRARSANERLEWIDAIQTAIKENEQ   50 (305)
Q Consensus         9 ~~~~~~f~i~~----~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~   50 (305)
                      ...+++|.|.+    +.|+|.|+|+|++|+++||++|+.++.....
T Consensus        69 ~~~~~~F~I~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~~  114 (125)
T 1unq_A           69 RPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLKK  114 (125)
T ss_dssp             SSSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEecCCCCceeEEEEeCCHHHHHHHHHHHHHHHhhccc
Confidence            46679999995    6899999999999999999999999977554

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A

Probab=97.78  E-value=3e-05  Score=57.53  Aligned_cols=35  Identities=40%  Similarity=0.599  Sum_probs=32.5

Q ss_pred             CCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207          11 YNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAI   45 (305)
Q Consensus        11 ~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ai   45 (305)
                      .+++|.|.++. ++|.|.|+|++|+++|+++|+.++
T Consensus        73 ~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~ai~~~~  108 (109)
T 2i5f_A           73 EENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS  108 (109)
T ss_dssp             CCSEEEEECTTCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CceEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence            68999999986 679999999999999999999886

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.77  E-value=3.6e-05  Score=58.44  Aligned_cols=40  Identities=23%  Similarity=0.400  Sum_probs=34.5

Q ss_pred             CCcCCCceEEEEEe-ceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207           7 QTEDYNNEFSVIAI-SRSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus         7 ~~~~~~~~f~i~~~-~ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      +....+++|.|.++ .|+|.|.|+|++|+++||++|+.++.
T Consensus        80 ~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~  120 (122)
T 2yry_A           80 DNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAAR  120 (122)
T ss_dssp             CSCSSSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             ccCCcccEEEEecCCCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            34567889999865 69999999999999999999998863

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.76  E-value=2.6e-05  Score=58.66  Aligned_cols=40  Identities=23%  Similarity=0.400  Sum_probs=34.5

Q ss_pred             CCcCCCceEEEEEe-ceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207           7 QTEDYNNEFSVIAI-SRSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus         7 ~~~~~~~~f~i~~~-~ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      +....+|+|.|.++ .|+|.|.|+|++|+++||++|+.++.
T Consensus        69 ~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~  109 (117)
T 2d9y_A           69 DNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAAR  109 (117)
T ss_dssp             TTCCCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred             ccCCCccEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            34567889999764 69999999999999999999998874

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}

Probab=97.75  E-value=2.5e-05  Score=59.84  Aligned_cols=37  Identities=16%  Similarity=0.293  Sum_probs=33.8

Q ss_pred             CCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus        10 ~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      ..+++|.|.++. |+|.|.|+|++|+++|+++|+.|+.
T Consensus        82 ~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~  119 (128)
T 2dkp_A           82 NRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAAL  119 (128)
T ss_dssp             SSCSEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHHS
T ss_pred             CCCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            567899999986 9999999999999999999998864

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}

Probab=97.75  E-value=6.6e-05  Score=57.96  Aligned_cols=40  Identities=20%  Similarity=0.318  Sum_probs=35.0

Q ss_pred             CCCceEEEEE--ec------------------eEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIA--IS------------------RSFTLRARSANERLEWIDAIQTAIKENE   49 (305)
Q Consensus        10 ~~~~~f~i~~--~~------------------ksf~~~a~s~~ek~~W~~~i~~ai~~~~   49 (305)
                      ..+|+|.|.+  |.                  |+|.|+|+|++|+++||++|+.+|....
T Consensus        72 ~~~~~F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~~~~  131 (134)
T 2y7b_A           72 ARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLVDIR  131 (134)
T ss_dssp             CCTTEEEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHHHHh
Confidence            5689999998  43                  5899999999999999999999998743

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A

Probab=97.73  E-value=4e-05  Score=58.81  Aligned_cols=39  Identities=13%  Similarity=0.231  Sum_probs=33.7

Q ss_pred             cCCCceEEEEEe---ceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207           9 EDYNNEFSVIAI---SRSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus         9 ~~~~~~f~i~~~---~ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      ...+++|+|.++   .+.|.|.|+|++|+++||.+|+.++..
T Consensus        79 ~~k~~~F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~~  120 (124)
T 2w2x_D           79 NQKSFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREITWK  120 (124)
T ss_dssp             TTBSEEEEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHC-
T ss_pred             CCCCEEEEEECCCCCCceEEEEECCHHHHHHHHHHHHHHHHh
Confidence            456789999986   478999999999999999999998754

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A

Probab=97.69  E-value=5.7e-05  Score=65.72  Aligned_cols=46  Identities=17%  Similarity=0.317  Sum_probs=39.8

Q ss_pred             CCCcCCCceEEEEE-eceEEEEEeCCHHHHHHHHHHHHHHHHHHHhc
Q psy2207           6 PQTEDYNNEFSVIA-ISRSFTLRARSANERLEWIDAIQTAIKENEQH   51 (305)
Q Consensus         6 ~~~~~~~~~f~i~~-~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~~   51 (305)
                      +++.+.+|+|.|.+ ..++|.|+|+|++|+++||++|+.++.....+
T Consensus        83 ~~~~kk~~~F~I~t~~~r~y~f~A~s~ee~~~Wi~aI~~a~~~~~~~  129 (263)
T 3a8p_A           83 PEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACASLFAK  129 (263)
T ss_dssp             TTCSSCSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCCCCEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcccc
Confidence            45556789999999 68999999999999999999999998876543

>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}

Probab=97.69  E-value=0.00046  Score=53.60  Aligned_cols=78  Identities=19%  Similarity=0.263  Sum_probs=57.1

Q ss_pred             ceEEEEEEECCEEEEE----cc-CccCccceEEEecCeEEEEccccCCcceeEEEEeCC-----ceeEEEEcCCHHHHHH
Q psy2207         224 WKRYWFVLKDQVMYKY----KA-SEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQG-----QDPLVFGADNEQSYER  293 (305)
Q Consensus       224 wkrrw~vL~~~~L~~y----~~-~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~-----~~~~~f~a~s~e~~~~  293 (305)
                      -.|..|.+.|-.||..    +. .....-...++|.|..|...... ..+|+|.|....     ...+.|.|+|.+++.+
T Consensus        34 qqR~~FLFND~LL~TK~~~kkk~~~~Y~vr~~~~L~gm~V~~~e~e-~~p~~~~l~s~~~G~~~k~~i~~~A~s~~ER~r  112 (140)
T 3qwm_A           34 HQREIFLFNDLLVVTKIFQKKKNSVTYSFRQSFSLYGMQVLLFENQ-YYPNGIRLTSSVPGADIKVLINFNAPNPQDRKK  112 (140)
T ss_dssp             TEEEEEEESSCEEEEECCC---CCCCCCCEEEECCTTEEEEEECCS-SCTTEEEEEECCTTSCCEEEEEEECSSHHHHHH
T ss_pred             cceEEEEecchhhheeecccCCCCCceEEEEEeeecceEEEcccCC-CCceEEEEEecCCCCcceEEEEEECCCHHHHHH
Confidence            3555566677777774    11 11234567899999999866443 478999999642     4679999999999999


Q ss_pred             HHHHHHHHH
Q psy2207         294 WMKAMREAT  302 (305)
Q Consensus       294 Wi~al~~a~  302 (305)
                      |+++|+.|+
T Consensus       113 wi~dL~esI  121 (140)
T 3qwm_A          113 FTDDLRESI  121 (140)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999875

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A

Probab=97.68  E-value=2.6e-05  Score=61.59  Aligned_cols=43  Identities=16%  Similarity=0.350  Sum_probs=35.6

Q ss_pred             CcCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHHHHHHHh
Q psy2207           8 TEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAIKENEQ   50 (305)
Q Consensus         8 ~~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ai~~~~~   50 (305)
                      ....+++|.|.++. |+|.|+|+|++|+++||++|+.++.....
T Consensus        80 ~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~~  123 (148)
T 1u5f_A           80 DGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFILQDLGS  123 (148)
T ss_dssp             STTGGGEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHCC----
T ss_pred             CCCCccEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHHHhcC
Confidence            44557999999987 99999999999999999999999876543

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*

Probab=97.68  E-value=4.6e-05  Score=57.90  Aligned_cols=39  Identities=18%  Similarity=0.328  Sum_probs=35.0

Q ss_pred             cCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207           9 EDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus         9 ~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      ...+++|.|.++. |+|.|.|+|++|+++|+.+|+.++..
T Consensus        71 ~~~~~~f~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~~~  110 (123)
T 1upq_A           71 RGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASRA  110 (123)
T ss_dssp             TSSSSEEEEECTTSCCEEEECSSHHHHHHHHHHHHHHHC-
T ss_pred             CCCcEEEEEECCCCeEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            4568999999987 99999999999999999999999864

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A

Probab=97.64  E-value=5.1e-05  Score=58.25  Aligned_cols=37  Identities=38%  Similarity=0.590  Sum_probs=33.9

Q ss_pred             CCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207          11 YNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus        11 ~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      .+++|.|.++. |+|.|+|+|++|+++||++|+.++..
T Consensus        84 ~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~  121 (129)
T 1x05_A           84 EENLFEIITADEVHYFLQAATPKERTEWIKAIQMASRT  121 (129)
T ss_dssp             SCSEEEEECTTCCCCEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             CCeEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHc
Confidence            68999999985 77999999999999999999999864

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*

Probab=97.62  E-value=5.4e-05  Score=65.90  Aligned_cols=42  Identities=14%  Similarity=0.241  Sum_probs=36.3

Q ss_pred             CCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy2207           7 QTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKEN   48 (305)
Q Consensus         7 ~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~   48 (305)
                      .+.+.+|+|.|.++.|+|.|.|+|++|+++||++|+.++...
T Consensus        73 ~~~~~~~~F~I~t~~rty~l~A~se~e~~~Wi~aL~~~~~~~  114 (264)
T 1qqg_A           73 ADSKNKHLVALYTRDEHFAIAADSEAEQDSWYQALLQLHNRA  114 (264)
T ss_dssp             CCSSCSSEEEEEESSCEEEEECSSHHHHHHHHHHHHHHC---
T ss_pred             cCCCCCcEEEEEECCEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence            346678999999999999999999999999999999988764

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.62  E-value=5.3e-05  Score=58.71  Aligned_cols=38  Identities=24%  Similarity=0.357  Sum_probs=32.3

Q ss_pred             CCCceEEEEEec------------------------eEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAIS------------------------RSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus        10 ~~~~~f~i~~~~------------------------ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      +.+++|.|.++.                        +.|.|.|+|++|+++||++|+.|+..
T Consensus        64 ~~~~~F~i~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~~  125 (130)
T 1v88_A           64 KDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKS  125 (130)
T ss_dssp             TSSCEEEEECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTT
T ss_pred             CCCeEEEEEcCCccccccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            445899999764                        45999999999999999999999853

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=97.61  E-value=2.8e-05  Score=59.72  Aligned_cols=36  Identities=36%  Similarity=0.574  Sum_probs=33.2

Q ss_pred             CCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207          11 YNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus        11 ~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      .+++|.|.+++ |+|.|+|+|++|+++||++|+.++.
T Consensus        88 ~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~~~  124 (129)
T 1x1g_A           88 QGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLTS  124 (129)
T ss_dssp             CSSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHHSS
T ss_pred             CCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            57999999997 6899999999999999999999874

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.52  E-value=0.00012  Score=55.40  Aligned_cols=35  Identities=29%  Similarity=0.388  Sum_probs=31.4

Q ss_pred             CCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAI   45 (305)
Q Consensus        10 ~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai   45 (305)
                      +..++|.|.|++|+|.|.|+++ |+++||.+|.+..
T Consensus        86 k~~~aF~l~T~er~~~laAe~~-E~~~Wi~~ic~~a  120 (127)
T 2d9w_A           86 RDTSAFFLETKERLYLLAAPAA-ERGDWVQAICLLA  120 (127)
T ss_dssp             SSCEEEEEEESSCEEEEEECHH-HHHHHHHHHHHHH
T ss_pred             CcceEEEEEeCCcEEEEEeCcH-HHHHHHHHHHHHh
Confidence            6779999999999999999975 8999999998643

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=97.44  E-value=0.00016  Score=54.82  Aligned_cols=38  Identities=18%  Similarity=0.439  Sum_probs=33.3

Q ss_pred             cCCCceEEEEEe------ceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207           9 EDYNNEFSVIAI------SRSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus         9 ~~~~~~f~i~~~------~ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      .++++.|+|...      .++|.|.|+|++|+++|+.+|..+|.
T Consensus        72 ~~~p~iF~I~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~i~  115 (117)
T 2rov_A           72 KEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKKIP  115 (117)
T ss_dssp             TTGGGEEEEEECSSSSTTCEEEEEECSSHHHHHHHHHHHHHHCT
T ss_pred             ccCCcEEEEEeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHhc
Confidence            457889999874      59999999999999999999998763

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A

Probab=97.37  E-value=0.00028  Score=53.80  Aligned_cols=35  Identities=17%  Similarity=0.412  Sum_probs=31.0

Q ss_pred             CCceEEEEEec-------eEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207          11 YNNEFSVIAIS-------RSFTLRARSANERLEWIDAIQTAI   45 (305)
Q Consensus        11 ~~~~f~i~~~~-------ksf~~~a~s~~ek~~W~~~i~~ai   45 (305)
                      ..+.|.|.++.       ++|.|.|+|++|+++||++|+.++
T Consensus        76 ~~~~F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~  117 (120)
T 4a6h_A           76 SDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILT  117 (120)
T ss_dssp             -CCEEEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             CCcEEEEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence            67899999876       599999999999999999999864

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A

Probab=97.37  E-value=0.0013  Score=59.36  Aligned_cols=92  Identities=14%  Similarity=0.242  Sum_probs=66.7

Q ss_pred             CceeeeeeeccCCCceEEEEEEECCEEEEEccCcc-----------CccceEEEecCeEEEEccccCCcceeEEEEeCCc
Q psy2207         210 SQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASED-----------IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQ  278 (305)
Q Consensus       210 ~~~~G~L~~~~~~~wkrrw~vL~~~~L~~y~~~~d-----------~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~  278 (305)
                      .++.|.|.+.+  .++.+++.|=+..|.+-+....           ..-.+.|+|.++.|....+....++.|.|.+...
T Consensus       247 li~eG~l~~~g--~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~d~~~~~~~F~i~~~~~  324 (354)
T 1dbh_A          247 FIMEGTLTRVG--AKHERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDE  324 (354)
T ss_dssp             EEEEEEEEETT--CSSCEEEEEESSEEEEEEECTTCCCCTTSCCCSEEEEEEEESCSCEEEECCCSSSCCSEEEECCTTS
T ss_pred             EEEEeeEEEEe--cCceEEEEEeCCEEEEEecCCCCCCCCCCCCcceeEEEEEeccceEEEeCCcccccCccEEEecCCC
Confidence            45677776653  5677777776666666664321           1124678898888876544445678999987655


Q ss_pred             eeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         279 DPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       279 ~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      ..|.|.|.|+++.+.|+++|.+|..
T Consensus       325 ~~~~l~a~s~~ek~~W~~~i~~~~~  349 (354)
T 1dbh_A          325 NSVIFSAKSAEEKNNWMAALISLQY  349 (354)
T ss_dssp             CCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            6799999999999999999998753

>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}

Probab=97.36  E-value=0.00075  Score=55.42  Aligned_cols=92  Identities=10%  Similarity=0.111  Sum_probs=61.5

Q ss_pred             CCceeeeeeecc-CCCceEEEEEEECCEEEEEccCccCc-------cceEEEecCeEEEEccccCCcceeEEEEeC---C
Q psy2207         209 GSQHSGWLHKKS-GRNWKRYWFVLKDQVMYKYKASEDIK-------ALLSIPVLGYELEALNEQDNFKYVFQLKHQ---G  277 (305)
Q Consensus       209 ~~~~~G~L~~~~-~~~wkrrw~vL~~~~L~~y~~~~d~~-------p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~---~  277 (305)
                      ..++.|-|..+. .+.++.+++.|=+..|.+-....+..       ....|+|.++.|.....+  . ..|-|+..   +
T Consensus        70 ~Ll~eG~L~~k~~~~~~~d~~~fLf~D~Ll~~~~~~~ky~~~~~~~~~pvi~L~~~~vre~a~d--~-~~~fli~~~~~g  146 (185)
T 2lg1_A           70 KLVRDGSVFLKNAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE--E-KGLFLISMGMTD  146 (185)
T ss_dssp             CEEEEEEEEEECTTCCEEEEEEEEESSEEECCEEETTEEECCCCSSSCSEEESSSCEEECCSSC--S-SEEEEECCSSSC
T ss_pred             ceeeeceEEEeccCCCeeeEEEEeecCEEEEEEecCCEEEEEcccCCCCeEeecceEEeccCCC--C-CeEEEEEecCCC
Confidence            457899997554 55789999988665554443211110       124577888887643322  2 24555542   3


Q ss_pred             ceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         278 QDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       278 ~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      ...|.|.|.|.++.+.|+++|+.|+.
T Consensus       147 ~~~yel~a~s~~er~~W~~~I~~Ai~  172 (185)
T 2lg1_A          147 PEMVEVHASSKEERNSWIQIIQDTIN  172 (185)
T ss_dssp             CCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            56899999999999999999998864

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}

Probab=97.34  E-value=0.00077  Score=62.72  Aligned_cols=91  Identities=15%  Similarity=0.287  Sum_probs=63.0

Q ss_pred             ceeeeeeeccCCCceEEEEEEECCEEEEEccCcc--CccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCCH
Q psy2207         211 QHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASED--IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNE  288 (305)
Q Consensus       211 ~~~G~L~~~~~~~wkrrw~vL~~~~L~~y~~~~d--~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s~  288 (305)
                      +..|.|.+...+.++.+|+.|=...|.+-+...+  ......|+|.+..|.... ....++.|.|..+ ...|.|.|.|+
T Consensus       245 i~~g~l~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~y~~k~~i~L~~l~v~~~~-~~~~~~~f~i~~~-~~~~~l~a~s~  322 (434)
T 3mpx_A          245 LKEGTLMKVTGKNRRPRHLFLMNDVLLYTYPQKDGKYRLKNTLAVANMKVSRPV-MEKVPYALKIETS-ESCLMLSASSC  322 (434)
T ss_dssp             EECCEEEEEETTEEEEEEEEEESSEEEEEEECTTSCEEEEEEEEC-----CCCC-CTTSCSEEEEECS-SCEEEEECSSH
T ss_pred             EecceEEEEeCCCceEEEEEEECCEEEEEEecCCCeEEEEEEEEcCCcEEEecC-CCCCCeeEEEecC-CeEEEEecCCH
Confidence            5778887655556788999998778877775432  234567888887775332 2356799999754 45799999999


Q ss_pred             HHHHHHHHHHHHHHc
Q psy2207         289 QSYERWMKAMREATT  303 (305)
Q Consensus       289 e~~~~Wi~al~~a~~  303 (305)
                      ++.+.|+++|++|+.
T Consensus       323 ~ek~~W~~~i~~ai~  337 (434)
T 3mpx_A          323 AERDEWYGCLSRALP  337 (434)
T ss_dssp             HHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998763

>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1

Probab=97.29  E-value=0.0042  Score=47.86  Aligned_cols=78  Identities=9%  Similarity=0.133  Sum_probs=53.4

Q ss_pred             eEEEEEEEC-CEEEEEccC--ccCccceEEEecCeEEEEccc----------cCCcceeEEEEeCCc-eeEEEEcCCHHH
Q psy2207         225 KRYWFVLKD-QVMYKYKAS--EDIKALLSIPVLGYELEALNE----------QDNFKYVFQLKHQGQ-DPLVFGADNEQS  290 (305)
Q Consensus       225 krrw~vL~~-~~L~~y~~~--~d~~p~~~i~L~~~~v~~~~~----------~~~~~~~F~l~~~~~-~~~~f~a~s~e~  290 (305)
                      +.++|.|.+ ...++|.+.  ......+.|+|..+.-+....          ......+|.|++.+. +++.|.|+|+++
T Consensus        29 k~r~f~l~~~~~~~w~~s~~~~~~~~~~~i~i~~I~eIr~G~~s~~~~~~~~~~~~~~~FsIiy~~~~k~LdlvA~s~~e  108 (131)
T 1mai_A           29 RERFYKLQEDCKTIWQESRKVMRSPESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFKDQRNTLDLIAPSPAD  108 (131)
T ss_dssp             EEEEEEECTTSSEEEECCCCTTCCTTTTEEEGGGEEEEEESSCSHHHHHHCTTSCGGGEEEEEESSSCCCEEEECSSHHH
T ss_pred             eeEEEEECCCCCEEEeCCcCCCCCCcCcEEEHhhhHHHHCCCCCHHHHhhhhcCCccceEEEEECCCCceEEEEeCCHHH
Confidence            567777764 445566421  123467889997765443322          112458999999774 689999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2207         291 YERWMKAMREAT  302 (305)
Q Consensus       291 ~~~Wi~al~~a~  302 (305)
                      ++.|+.+|+.-+
T Consensus       109 ~~~Wv~gL~~L~  120 (131)
T 1mai_A          109 AQHWVQGLRKII  120 (131)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999997543

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A

Probab=97.10  E-value=0.0038  Score=57.53  Aligned_cols=94  Identities=16%  Similarity=0.231  Sum_probs=65.3

Q ss_pred             Cceeeeeeecc--CCCceEEEEEEECCEEEEEccCcc-CccceEEEecCeEEEEcccc----CCcceeEEEEeC-CceeE
Q psy2207         210 SQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASED-IKALLSIPVLGYELEALNEQ----DNFKYVFQLKHQ-GQDPL  281 (305)
Q Consensus       210 ~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d-~~p~~~i~L~~~~v~~~~~~----~~~~~~F~l~~~-~~~~~  281 (305)
                      .++.|.|....  .+.++.+++.|=+..|.+-+...+ ..-...|+|.++.|...++.    ...++.|.|.+. +...|
T Consensus       234 li~~G~l~~~~~~~~~~~~~~~fLF~d~Ll~~k~k~~~y~~k~~i~l~~~~v~~~~~~~~~~~~~~~~F~i~~~~~~~~~  313 (406)
T 2vrw_B          234 PKIDGELKITSVERRSKTDRYAFLLDKALLICKRRGDSYDLKASVNLHSFQVRDDSSGERDNKKWSHMFLLIEDQGAQGY  313 (406)
T ss_dssp             EEEEEEEEEECSSCCSCEEEEEEEESSEEEEEEEETTEEEEEEEEETTTEEEEC--------CTTCEEEEEEETTCSCEE
T ss_pred             ccccccEEEEecCCCccceEEEEecCCEEEEEEecCCceEEEEEecccceeeeecCCCCccCCccceeeEEEecCCCceE
Confidence            46778887664  456788888886666666654322 22346788888877643322    123589999874 45679


Q ss_pred             EEEcCCHHHHHHHHHHHHHHHc
Q psy2207         282 VFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       282 ~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      .|.|.|+++.+.|+++|++|..
T Consensus       314 ~l~a~s~~ek~~W~~~i~~ai~  335 (406)
T 2vrw_B          314 ELFFKTRELKKKWMEQFEMAIS  335 (406)
T ss_dssp             EEEESSHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999998763

>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}

Probab=97.08  E-value=0.0058  Score=56.45  Aligned_cols=91  Identities=12%  Similarity=0.112  Sum_probs=64.9

Q ss_pred             Cceeeeeeecc-CCCceEEEEEEECCEEEEEccCccC------------------ccceEEEecCeEEEEccccCCccee
Q psy2207         210 SQHSGWLHKKS-GRNWKRYWFVLKDQVMYKYKASEDI------------------KALLSIPVLGYELEALNEQDNFKYV  270 (305)
Q Consensus       210 ~~~~G~L~~~~-~~~wkrrw~vL~~~~L~~y~~~~d~------------------~p~~~i~L~~~~v~~~~~~~~~~~~  270 (305)
                      .++.|.|.... .+.++.+++.|=...|.+-+...+.                  .-...|+|.+..|....   +....
T Consensus       295 li~eG~l~~~~~~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~k~~i~l~~~~v~~~~---~~~~~  371 (418)
T 3t06_A          295 MIHEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVA---TDKRA  371 (418)
T ss_dssp             EEEEEEEEECCBTTBCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEECS---SCSSE
T ss_pred             eEEeceEEEEeCCCCeEEEEEEecCCEEEEEEEcCCceEEeecccccccCCCcccccCCceechhceecccc---ccCce
Confidence            46888887765 5567888888877766666533211                  11357888888876432   22357


Q ss_pred             EEEEeCC----ceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         271 FQLKHQG----QDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       271 F~l~~~~----~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      |.|....    ...|.|.|.|.++.+.|+++|++|+.
T Consensus       372 f~l~~~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~  408 (418)
T 3t06_A          372 FFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVR  408 (418)
T ss_dssp             EEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCceEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            8887643    25899999999999999999998875

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=97.06  E-value=0.0044  Score=61.48  Aligned_cols=93  Identities=23%  Similarity=0.412  Sum_probs=69.2

Q ss_pred             Cceeeeeeecc----CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEcccc-CCcceeEEEEeCCce-----
Q psy2207         210 SQHSGWLHKKS----GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ-DNFKYVFQLKHQGQD-----  279 (305)
Q Consensus       210 ~~~~G~L~~~~----~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~-~~~~~~F~l~~~~~~-----  279 (305)
                      ++..|||....    +..-+.+||||....|.+|++++...-.-.++|.+..+...... .++++.|.|..+..+     
T Consensus       540 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  619 (772)
T 3zvr_A          540 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKD  619 (772)
T ss_dssp             EEEEEEEEESSSCCC---CCEEEEEEESSEEEEESSTTCCCEEEEEECTTEEEEEC-------CEEEEEEETTSSCSBTT
T ss_pred             ceeeeeeeecccccccCCCccceeeccccccccccchhhhcccccccccccccchhhhccccccccccccCCccccccch
Confidence            46779998765    44678999999999999999977766677888888776543322 356789999987664     


Q ss_pred             --eEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         280 --PLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       280 --~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                        .+-++|++.++...|...+-.|-
T Consensus       620 ~~~~~l~~~~~~~~~~~~~~~~~~~  644 (772)
T 3zvr_A          620 YRQLELACETQEEVDSWKASFLRAG  644 (772)
T ss_dssp             BSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred             hhhhhhhccccccchhhHHhhhhcc
Confidence              56899999999999999985543

>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1

Probab=97.06  E-value=0.00082  Score=52.02  Aligned_cols=102  Identities=15%  Similarity=0.177  Sum_probs=63.1

Q ss_pred             EEeCCHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcccCcCCCCCeeeecCCCccccccccccc-ccccccccc
Q psy2207          26 LRARSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVFT-VTFRRHHCR  104 (305)
Q Consensus        26 ~~a~s~~ek~~W~~~i~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~d~~~~~C~~C~~~f~-~~~rrhhCr  104 (305)
                      ++.-|++|++--++.|+..-............... ...+......         ......|+.|..+|+ +.++.+.|.
T Consensus         7 ls~LteeE~~~Il~Vl~Rd~~l~~~E~~ri~kL~~-~l~~~k~~~~---------~~~~~~C~~C~~~~g~l~~~g~~C~   76 (134)
T 1zbd_B            7 QEELTDEEKEIINRVIARAEKMETMEQERIGRLVD-RLETMRKNVA---------GDGVNRCILCGEQLGMLGSASVVCE   76 (134)
T ss_dssp             -CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTCC---------SCSSSBCSSSCCBCSTTSCCEEECT
T ss_pred             cccCCHHHHHHHHHHHhhHHHHHHhHHHHHHHHHH-HHHHHHHHhc---------cCCCccccccCCCcccccCCCCCCC
Confidence            45568999988888888754332111110000000 0000000001         134678999999998 458899999


Q ss_pred             cccceeccCccCCeecccCCCCccccccHhhHHHHH
Q psy2207         105 ACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLV  140 (305)
Q Consensus       105 ~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~  140 (305)
                      .|..-||.+|..+..   +......=+|..|...-.
T Consensus        77 ~C~~~VC~~C~~~~~---~~~~~~~W~C~vC~k~re  109 (134)
T 1zbd_B           77 DCKKNVCTKCGVETS---NNRPHPVWLCKICLEQRE  109 (134)
T ss_dssp             TTCCEEETTSEEECC---CSSSSCCEEEHHHHHHHH
T ss_pred             CCCcccccccCCccC---CCCCccceechhhHHHHH
Confidence            999999999998742   224567789999998755

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*

Probab=97.05  E-value=0.00058  Score=61.78  Aligned_cols=45  Identities=20%  Similarity=0.347  Sum_probs=38.0

Q ss_pred             eecCCCcCCCceEEEEEe----------------------ceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207           3 VCLPQTEDYNNEFSVIAI----------------------SRSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus         3 v~~~~~~~~~~~f~i~~~----------------------~ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      |...+....+++|+|.++                      .|+|.|+|+|++|+++||++|+.++..
T Consensus       263 v~~~~~~~~~~~F~I~~~~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~~  329 (347)
T 2r09_A          263 IREVEDPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISR  329 (347)
T ss_dssp             EEEECCSSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHHC
T ss_pred             EEEccCCCCCCEEEEEeCCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            344445577899999987                      489999999999999999999999864

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A

Probab=97.05  E-value=0.00068  Score=51.39  Aligned_cols=35  Identities=17%  Similarity=0.322  Sum_probs=30.9

Q ss_pred             CCCceEEEEEec--------eEEEEEeCCHHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAIS--------RSFTLRARSANERLEWIDAIQTA   44 (305)
Q Consensus        10 ~~~~~f~i~~~~--------ksf~~~a~s~~ek~~W~~~i~~a   44 (305)
                      ..+|+|.|..++        ++|.|.|+|++|+++|+.+|.+|
T Consensus        73 ~rk~~F~l~~~d~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~ra  115 (125)
T 1dyn_A           73 SSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRA  115 (125)
T ss_dssp             SSCEEEEEEETTSSCSSTTCSSEEEEESSHHHHHHHHHHHHHT
T ss_pred             CCceEEEEECCCCccccccceEEEEeCCCHHHHHHHHHHHHhC
Confidence            568999999976        49999999999999999999544

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=97.02  E-value=0.0083  Score=56.23  Aligned_cols=93  Identities=19%  Similarity=0.248  Sum_probs=66.1

Q ss_pred             Cceeeeeeecc--CCCceEEEEEEECCEEEEEccCcc----CccceEEEecCeEEEEccccC------CcceeEEEEeCC
Q psy2207         210 SQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASED----IKALLSIPVLGYELEALNEQD------NFKYVFQLKHQG  277 (305)
Q Consensus       210 ~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d----~~p~~~i~L~~~~v~~~~~~~------~~~~~F~l~~~~  277 (305)
                      .++.|.|.+..  .+..+.+++.|=+..|.+-+....    ..-.+.|+|.++.|....+..      ..++.|.|....
T Consensus       334 li~~G~l~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i~~~~  413 (466)
T 2pz1_A          334 LIYSGELTRVTQPQAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGA  413 (466)
T ss_dssp             EEEEEEEEEECTTTCCEEEEEEEEETTEEEEEEECSSCTTCEEEEEEEETTTCEEEECCSBSCCSSCCCBCEEEEEECSS
T ss_pred             eEEeeeEEEEecCCCCeeEEEEEEECCEEEEEEeccccCCceEEeeeeeccceEEEeCCCCcccccccccceeEEEEeCC
Confidence            46778776654  345778888887777766664321    123567889888887543321      345899998653


Q ss_pred             -ceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         278 -QDPLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       278 -~~~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                       ...|.|.|.|.++.+.|+++|+.|.
T Consensus       414 ~~~~~~l~a~s~~eK~~W~~~i~~a~  439 (466)
T 2pz1_A          414 TGDSHLLCTRKPEQKQRWLKAFARER  439 (466)
T ss_dssp             SCCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCHHHHHHHHHHHHHHH
Confidence             4579999999999999999998875

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1

Probab=96.91  E-value=0.0072  Score=55.63  Aligned_cols=93  Identities=20%  Similarity=0.206  Sum_probs=65.3

Q ss_pred             Cceeeeeeecc--CCCceEEEEEEECCEEEEEccCcc----CccceEEEecCeEEEEccccC------CcceeEEEEeCC
Q psy2207         210 SQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASED----IKALLSIPVLGYELEALNEQD------NFKYVFQLKHQG  277 (305)
Q Consensus       210 ~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d----~~p~~~i~L~~~~v~~~~~~~------~~~~~F~l~~~~  277 (305)
                      .++.|.|....  .+..+.+++.|=+..|.+-+....    ..-.+.|+|.++.|....+..      ..++.|.|.+..
T Consensus       257 Li~~G~l~~~~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i~~~~  336 (402)
T 2dfk_A          257 LIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKE  336 (402)
T ss_dssp             EEEEEEEEEESSTTCCCEEEEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEECSSSCCEESSEEEEEESS
T ss_pred             eEEeceEEEEeccCCceEEEEEEeeCCEEEEEEeccccCCceEEeeeeeccceEEEecCCCCccccccccceeEEEEECC
Confidence            46778877654  345678888887776666664321    123467888888887543321      234799998753


Q ss_pred             -ceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         278 -QDPLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       278 -~~~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                       ...|.|.|.|.++.+.|+++|..|.
T Consensus       337 ~~~~~~l~a~s~~eK~~Wi~~i~~a~  362 (402)
T 2dfk_A          337 TEEVHLFFAKKLEEKIRWLRAFREER  362 (402)
T ss_dssp             SSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCHHHHHHHHHHHHHHH
Confidence             4579999999999999999998775

>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*

Probab=96.88  E-value=0.012  Score=53.25  Aligned_cols=91  Identities=12%  Similarity=0.112  Sum_probs=63.7

Q ss_pred             Cceeeeeeecc-CCCceEEEEEEECCEEEEEccCccC------------------ccceEEEecCeEEEEccccCCccee
Q psy2207         210 SQHSGWLHKKS-GRNWKRYWFVLKDQVMYKYKASEDI------------------KALLSIPVLGYELEALNEQDNFKYV  270 (305)
Q Consensus       210 ~~~~G~L~~~~-~~~wkrrw~vL~~~~L~~y~~~~d~------------------~p~~~i~L~~~~v~~~~~~~~~~~~  270 (305)
                      .++.|.|.... .+.++.+++.|=+..|.+-+...+.                  .-.+.|+|.++.|....   +.+..
T Consensus       253 li~~G~l~~~~~~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~---~~~~~  329 (368)
T 1xcg_A          253 MIHEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVA---TDKRA  329 (368)
T ss_dssp             EEEEEEEEECCSSSCCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEECS---SCSSE
T ss_pred             EEeecceEeeecCCCeeEEEEEcccccHHHhhcccccceeeeccccccCCCCcccCcCCceEccceeeeccc---CCCce
Confidence            46788887654 5567888888866666665543210                  11457888887775432   22357


Q ss_pred             EEEEeCC----ceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         271 FQLKHQG----QDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       271 F~l~~~~----~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      |.|.+..    ...|.|.|.|.++.+.|+++|++|+.
T Consensus       330 f~i~~~~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai~  366 (368)
T 1xcg_A          330 FFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVR  366 (368)
T ss_dssp             EEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCCCceEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            8877642    36799999999999999999999874

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A

Probab=96.74  E-value=0.011  Score=56.67  Aligned_cols=92  Identities=10%  Similarity=0.081  Sum_probs=60.9

Q ss_pred             Cceeeeeeecc-CCCceEEEEEEECCEEEEEccCccC------------------ccceEEEecCeEEEEccccCCccee
Q psy2207         210 SQHSGWLHKKS-GRNWKRYWFVLKDQVMYKYKASEDI------------------KALLSIPVLGYELEALNEQDNFKYV  270 (305)
Q Consensus       210 ~~~~G~L~~~~-~~~wkrrw~vL~~~~L~~y~~~~d~------------------~p~~~i~L~~~~v~~~~~~~~~~~~  270 (305)
                      .++.|.|..+. .+.++.+++.|=...|.+-+...+.                  .....|+|.++.|......   ...
T Consensus       412 LI~eG~l~~~~~~~k~~~r~~fLF~D~LL~~k~k~~ky~~k~~~~~~~~~~d~k~~~~~~i~L~~l~v~e~~~d---~~~  488 (536)
T 3odw_A          412 LVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATD---HKA  488 (536)
T ss_dssp             EEEEEEEEEESCC---CEEEEEEESSEEEEEEEETTEEECCCC------------CCCSEEEGGGEEEEECTTC---TTE
T ss_pred             eeeecceEEEecCCCeeEEEEEEcCCEEEEEEEcCCeEEEeecccccccccccccccCceeecccceeeccccc---CCc
Confidence            57889887765 5567888888866666665532210                  0123588888877654322   235


Q ss_pred             EEEEeC---CceeEEEEcCCHHHHHHHHHHHHHHHcC
Q psy2207         271 FQLKHQ---GQDPLVFGADNEQSYERWMKAMREATTL  304 (305)
Q Consensus       271 F~l~~~---~~~~~~f~a~s~e~~~~Wi~al~~a~~~  304 (305)
                      |.|+..   +...|.|.|.|.++.+.|++.|++|+.-
T Consensus       489 ffli~~~~~~~~~~~L~A~S~eEK~~W~~~I~~aI~~  525 (536)
T 3odw_A          489 FYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGS  525 (536)
T ss_dssp             EEEEEC---CCCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             eEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            555543   4567999999999999999999998753

>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A

Probab=96.67  E-value=0.016  Score=52.63  Aligned_cols=91  Identities=10%  Similarity=0.087  Sum_probs=61.5

Q ss_pred             Cceeeeeeecc-CCCceEEEEEEECCEEEEEccCccC------------------ccceEEEecCeEEEEccccCCccee
Q psy2207         210 SQHSGWLHKKS-GRNWKRYWFVLKDQVMYKYKASEDI------------------KALLSIPVLGYELEALNEQDNFKYV  270 (305)
Q Consensus       210 ~~~~G~L~~~~-~~~wkrrw~vL~~~~L~~y~~~~d~------------------~p~~~i~L~~~~v~~~~~~~~~~~~  270 (305)
                      .++.|.|..+. .+.++.+++.|=...|.+-+...+.                  .....|+|.+..|......  . ..
T Consensus       259 li~eG~l~~~~~~~~~~~~~~fLF~d~Ll~~k~k~~k~~~k~~~~~~~~~~~~k~~~~~~i~l~~~~v~e~~~~--~-~~  335 (377)
T 3p6a_A          259 LVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATD--H-KA  335 (377)
T ss_dssp             EEEEEEEEEESSSSCEEEEEEEEESSEEEEEEEETTEEECCCCCCC---------CSCSEEEGGGEEEEECTTC--T-TE
T ss_pred             EEEECCcEEEecCCCeEEEEEEeeCCEEEEEEEcCceeEEeecccccccCccccCCCCCeEechhhhccccccc--c-ce
Confidence            57889986655 5578888888866666665532210                  0123688888777653322  2 24


Q ss_pred             EEEEeC---CceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         271 FQLKHQ---GQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       271 F~l~~~---~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      |.+...   +...|.|.|.|.++.+.|++.|++|+.
T Consensus       336 ~~~i~~~~~~~~~~~l~A~s~~ek~~W~~~I~~ai~  371 (377)
T 3p6a_A          336 FYVLFTWDQEAQIYELVAQTVSERKNWCALITETAG  371 (377)
T ss_dssp             EEEEETTCTTCCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             eEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHH
Confidence            444443   456799999999999999999998874

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=96.63  E-value=0.012  Score=56.84  Aligned_cols=93  Identities=14%  Similarity=0.168  Sum_probs=65.8

Q ss_pred             Cceeeeeeecc--CCCceEEEEEEECCEEEEEccCcc-CccceEEEecCeEEEEcccc----CCcceeEEEEeCC-ceeE
Q psy2207         210 SQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASED-IKALLSIPVLGYELEALNEQ----DNFKYVFQLKHQG-QDPL  281 (305)
Q Consensus       210 ~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d-~~p~~~i~L~~~~v~~~~~~----~~~~~~F~l~~~~-~~~~  281 (305)
                      .++.|.|....  .+.++.+++.|=...|.+-+...+ ......|+|.++.|......    ...++.|.|.+.. ...|
T Consensus       406 ll~~G~l~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~y~~k~~i~L~~~~v~~~~~~~~~~~~~~~~f~i~~~~~~~~~  485 (587)
T 3ky9_A          406 PKIDGELKITSVERRSKMDRYAFLLDKALLICKRRGDSYDLKDFVNLHSFQVRDDSSGDRDNKKWSHMFLLIEDQGAQGY  485 (587)
T ss_dssp             EEEEEEEEEECSSCCSCEEEEEEEETTEEEEEEEETTEEEEEEEEEGGGEEEEEC-----CCCTTCEEEEEEETTC---C
T ss_pred             eEEEeeEEEEeccCCCcceEEEEEECCEEEEEEecCCEEEeeeeechhhceeeecCCCCcccccccceeEEEEcCCCceE
Confidence            46788887664  566788888887776666554322 33467788988888754322    2345899999854 3679


Q ss_pred             EEEcCCHHHHHHHHHHHHHHH
Q psy2207         282 VFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       282 ~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      .|.|.|.++.+.|+++|++|.
T Consensus       486 ~L~A~S~eeK~~Wi~~I~~ai  506 (587)
T 3ky9_A          486 ELFFKTRELKKKWMEQFEMAI  506 (587)
T ss_dssp             EEEESSHHHHHHHHHHHHHHH
T ss_pred             EEEeCCHHHHHHHHHHHHHHh
Confidence            999999999999999999876

>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A

Probab=96.61  E-value=0.015  Score=53.02  Aligned_cols=92  Identities=13%  Similarity=0.120  Sum_probs=60.9

Q ss_pred             Cceeeeeeecc-CCCceEEEEEEECCEEEEEccCccC------------------ccceEEEecCeEEEEccccCCccee
Q psy2207         210 SQHSGWLHKKS-GRNWKRYWFVLKDQVMYKYKASEDI------------------KALLSIPVLGYELEALNEQDNFKYV  270 (305)
Q Consensus       210 ~~~~G~L~~~~-~~~wkrrw~vL~~~~L~~y~~~~d~------------------~p~~~i~L~~~~v~~~~~~~~~~~~  270 (305)
                      .++.|.|.... ...++.+++.|=+..|.+-+...+.                  .-.+.|+|.++.|.....+  .+..
T Consensus       257 li~eG~l~~~~~~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~d--~~~~  334 (385)
T 1txd_A          257 MIHEGPLVWKVNRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQVATD--NKAL  334 (385)
T ss_dssp             EEEEEEEEEESSSSCBCCEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEEEEECCC---CCEE
T ss_pred             EEEECcEEEEcCCCCeEEEEEEecCCeeEEEEecCCeeEEeeccccccccCCCCcCCCCceecccccccccccC--CceE
Confidence            46788887554 4557778887766666555432211                  1245688888777653222  2345


Q ss_pred             EEEEe--CCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         271 FQLKH--QGQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       271 F~l~~--~~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      |.|..  .+...|.|.|.|.++.+.|+++|.+|+.
T Consensus       335 f~i~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~  369 (385)
T 1txd_A          335 FVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAA  369 (385)
T ss_dssp             EEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCceEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            66654  2456899999999999999999998763

>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A

Probab=96.51  E-value=0.012  Score=52.83  Aligned_cols=89  Identities=19%  Similarity=0.314  Sum_probs=60.4

Q ss_pred             ceeeeeeeccCCCceEEEEEEECCEEEEEccCc--cC---c-cceEEEecCeEEEEcccc---------------CCcce
Q psy2207         211 QHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASE--DI---K-ALLSIPVLGYELEALNEQ---------------DNFKY  269 (305)
Q Consensus       211 ~~~G~L~~~~~~~wkrrw~vL~~~~L~~y~~~~--d~---~-p~~~i~L~~~~v~~~~~~---------------~~~~~  269 (305)
                      +..|.|.+..   -+.+++.|=+..|.+-+...  +.   . -...|+|.+..|....+.               ...++
T Consensus       233 i~~G~l~~~~---~~~~~~fLF~d~Ll~~k~~~~~~~~~~~v~k~~i~l~~l~v~~~~d~~~~~~~s~~g~~~~~~~~~~  309 (346)
T 2z0q_A          233 CCHGELKNNR---GVKLHVFLFQEVLVITRAVTHNEQLCYQLYRQPIPVKDLTLEDLQDGEVRLGGSLRGAFSNNERVKN  309 (346)
T ss_dssp             EEEEEEEETT---SCEEEEEEESSEEEEEEEEEETTEEEEEESSCCEEGGGCEEEECCTTTSCCCSCC--CCSHHHHTSS
T ss_pred             EEeceeEECC---CcEEEEEECCCcEEEEEEeccCCceeeeeecCCcchhhceeeecCCCccccCccccccccCCccccc
Confidence            5677776532   26677777666666655421  11   1 245688888887754322               12357


Q ss_pred             eEEEEeC---CceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         270 VFQLKHQ---GQDPLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       270 ~F~l~~~---~~~~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      .|.|.+.   ....|.|.|.|.++.+.|+++|++|.
T Consensus       310 ~F~i~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai  345 (346)
T 2z0q_A          310 FFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAK  345 (346)
T ss_dssp             EEEEEECCGGGCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ceEEEEecCCCCceEEEEECCHHHHHHHHHHHHHhh
Confidence            9999863   34679999999999999999999985

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=96.51  E-value=0.0041  Score=58.39  Aligned_cols=41  Identities=17%  Similarity=0.303  Sum_probs=36.3

Q ss_pred             CCCceEEEEEe--ceEEEEEeCCHHHHHHHHHHHHHHHHHHHh
Q psy2207          10 DYNNEFSVIAI--SRSFTLRARSANERLEWIDAIQTAIKENEQ   50 (305)
Q Consensus        10 ~~~~~f~i~~~--~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~   50 (305)
                      .++|+|.|.++  .++|.|+|.|++||+.|+++|++++.....
T Consensus       402 ~~~~~F~i~~~~~~~~~~l~a~s~~eK~~W~~~i~~a~~~~~~  444 (466)
T 2pz1_A          402 SIKNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQVQL  444 (466)
T ss_dssp             CBCEEEEEECSSSCCEEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccceeEEEEeCCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHHh
Confidence            46799999986  579999999999999999999999987654

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=96.47  E-value=0.00045  Score=65.56  Aligned_cols=48  Identities=31%  Similarity=0.511  Sum_probs=0.0

Q ss_pred             eeecC-CCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy2207           2 KVCLP-QTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENE   49 (305)
Q Consensus         2 ~v~~~-~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~   49 (305)
                      .|..+ +....+++|.|.++.++|.|+|.|++||++|+++|++++....
T Consensus       317 ~v~~~~d~~~~~~~F~i~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~  365 (510)
T 3jzy_A          317 LVKLPTDPSSDEPVFHISHIDRVYTLRTDNINERTAWVQKIKAASEQYI  365 (510)
T ss_dssp             -------------------------------------------------
T ss_pred             EEeccCCCCccccceeeeccceeEEeccCCHHHHHHHHHHHHHHHHHHH
Confidence            34444 3346789999999999999999999999999999999998754

>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A

Probab=96.47  E-value=0.0044  Score=55.99  Aligned_cols=40  Identities=15%  Similarity=0.387  Sum_probs=35.6

Q ss_pred             CCceEEEEE--eceEEEEEeCCHHHHHHHHHHHHHHHHHHHh
Q psy2207          11 YNNEFSVIA--ISRSFTLRARSANERLEWIDAIQTAIKENEQ   50 (305)
Q Consensus        11 ~~~~f~i~~--~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~   50 (305)
                      .+++|.|..  +.++|.|+|.|++||+.|+++|+++|.+..+
T Consensus       288 ~~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~  329 (353)
T 1kz7_A          288 DTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTSQLQ  329 (353)
T ss_dssp             BTTEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence            478999987  5689999999999999999999999987654

>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}

Probab=96.46  E-value=0.0017  Score=51.39  Aligned_cols=51  Identities=25%  Similarity=0.567  Sum_probs=43.2

Q ss_pred             Ccccccccccccc-cccccccccccceeccCccCCeecccCCCCccccccHhhHHHHH
Q psy2207          84 VSMCQRCTSVFTV-TFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLV  140 (305)
Q Consensus        84 ~~~C~~C~~~f~~-~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~  140 (305)
                      .+.|+.|..+|++ .++.+-|..|..-||.+|..+.      .....=+|..|+..-.
T Consensus        68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~------~~~~~W~C~vC~k~re  119 (153)
T 2zet_C           68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAH------PEEQGWLCDPCHLARV  119 (153)
T ss_dssp             GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECC------SSSSSCEEHHHHHHHH
T ss_pred             CccchhhcCccccccCCCCcCCCCCchhhccccccc------CCCCcEeeHHHHHHHH
Confidence            5789999999995 5889999999999999999543      2456789999998754

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1

Probab=96.45  E-value=0.0037  Score=57.61  Aligned_cols=41  Identities=17%  Similarity=0.344  Sum_probs=36.0

Q ss_pred             CCCceEEEEEe--ceEEEEEeCCHHHHHHHHHHHHHHHHHHHh
Q psy2207          10 DYNNEFSVIAI--SRSFTLRARSANERLEWIDAIQTAIKENEQ   50 (305)
Q Consensus        10 ~~~~~f~i~~~--~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~   50 (305)
                      .++|+|.|.++  .++|.|+|+|++||+.|+++|++++....+
T Consensus       325 ~~~~~F~i~~~~~~~~~~l~a~s~~eK~~Wi~~i~~a~~~~~~  367 (402)
T 2dfk_A          325 SMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKMVQE  367 (402)
T ss_dssp             EESSEEEEEESSSSCEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceeEEEEECCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHHh
Confidence            35799999986  579999999999999999999999887554

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}

Probab=96.35  E-value=0.0029  Score=55.16  Aligned_cols=44  Identities=23%  Similarity=0.427  Sum_probs=37.6

Q ss_pred             cCCCcCCCceEEEEE-eceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy2207           5 LPQTEDYNNEFSVIA-ISRSFTLRARSANERLEWIDAIQTAIKEN   48 (305)
Q Consensus         5 ~~~~~~~~~~f~i~~-~~ksf~~~a~s~~ek~~W~~~i~~ai~~~   48 (305)
                      .++..+.+|.|.|.+ ..+.|.|+|+|++|+++||.+|+.++...
T Consensus        82 a~d~~kKk~vF~L~t~~g~~yLFQA~s~eEm~~WI~aI~~a~~~~  126 (279)
T 3a8n_A           82 VPEHPKKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACAAA  126 (279)
T ss_dssp             CTTSSSSCSCCCEEETTTEEEECCCSCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCcEEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHhhh
Confidence            456677889999987 45689999999999999999999988643

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=96.20  E-value=0.015  Score=59.96  Aligned_cols=91  Identities=14%  Similarity=0.277  Sum_probs=66.1

Q ss_pred             CceeeeeeeccCCCceEEEEEEECCEEEEEccCcc-----------CccceEEEecCeEEEEccccCCcceeEEEEeCCc
Q psy2207         210 SQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASED-----------IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQ  278 (305)
Q Consensus       210 ~~~~G~L~~~~~~~wkrrw~vL~~~~L~~y~~~~d-----------~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~  278 (305)
                      .++.|.|.+.+.+  +.+++.|=+..|.+-+....           ..-.+.|+|.++.|....+....++.|.|.+.++
T Consensus       444 Li~eG~l~~~~~k--~~r~~FLF~D~Ll~~K~~~~~~~~~g~~~~~y~~k~~i~L~~l~V~~~~d~~~~~~~F~I~~~~~  521 (1049)
T 3ksy_A          444 FIMEGTLTRVGAK--HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDE  521 (1049)
T ss_dssp             CCCEEEEEETTCS--SCEEEEEETTEEEEEECCTTCCCCTTSCCCSCCCCCEECCSSCCCCCCCCSSSCCSEEEECCTTS
T ss_pred             EEEeceEEEEccC--ceEEEEeeCCeEEEEEecCccCCCCCCCCCceEEEEEEEcCceEEEECCCCccccceEEEEcCCC
Confidence            4677888776533  67777776666666664421           2345678888877765444445678999988766


Q ss_pred             eeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         279 DPLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       279 ~~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      ..|.|.|.|.++.+.|+++|+++.
T Consensus       522 ~~~~L~A~S~eeK~~Wi~~I~~~q  545 (1049)
T 3ksy_A          522 NSVIFSAKSAEEKNNWMAALISLQ  545 (1049)
T ss_dssp             CCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCHHHHHHHHHHHHHHH
Confidence            689999999999999999998654

>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A

Probab=96.03  E-value=0.007  Score=47.47  Aligned_cols=37  Identities=19%  Similarity=0.297  Sum_probs=33.0

Q ss_pred             CceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy2207          12 NNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENE   49 (305)
Q Consensus        12 ~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~   49 (305)
                      .+.|.|.+|+|+|+|.+. ..++++|+++|++++....
T Consensus       106 ~~~F~I~Tp~RtY~~~d~-~~~AqeWv~aI~~~~~~~~  142 (151)
T 1w1g_A          106 FKTFFVHTPNRTYYLMDP-SGNAHKWCRKIQEVWRQRY  142 (151)
T ss_dssp             SSEEEEEETTEEEEEECT-TSCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCceEEEEcC-ccCHHHHHHHHHHHHHHHh
Confidence            359999999999999997 8899999999999987644

>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}

Probab=96.01  E-value=0.011  Score=53.30  Aligned_cols=41  Identities=12%  Similarity=0.303  Sum_probs=35.4

Q ss_pred             CCCceEEEEEe-----ceEEEEEeCCHHHHHHHHHHHHHHHHHHHh
Q psy2207          10 DYNNEFSVIAI-----SRSFTLRARSANERLEWIDAIQTAIKENEQ   50 (305)
Q Consensus        10 ~~~~~f~i~~~-----~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~   50 (305)
                      ..++.|.|...     ..+|.|+|.|++||+.|+++|++++.+...
T Consensus       277 ~~~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~~~  322 (354)
T 2rgn_B          277 GDPCRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILESQRD  322 (354)
T ss_dssp             GCTTEEEEEEECSSSCEEEEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEecCCCCCceEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence            45789999873     589999999999999999999999987543

>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A

Probab=95.97  E-value=0.011  Score=53.85  Aligned_cols=40  Identities=18%  Similarity=0.289  Sum_probs=32.9

Q ss_pred             CceEEEEE---eceEEEEEeCCHHHHHHHHHHHHHHHHHHHhc
Q psy2207          12 NNEFSVIA---ISRSFTLRARSANERLEWIDAIQTAIKENEQH   51 (305)
Q Consensus        12 ~~~f~i~~---~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~~   51 (305)
                      ++.|.|..   ..++|.|+|.|++||+.|+++|++++......
T Consensus       332 ~~~f~i~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~~~~~~  374 (385)
T 1txd_A          332 KALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAASVKEQ  374 (385)
T ss_dssp             CEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEcCCCceEEEEEcCCHHHHHHHHHHHHHHHHhccCC
Confidence            44565554   26899999999999999999999999987654

>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A

Probab=95.93  E-value=0.06  Score=47.47  Aligned_cols=80  Identities=16%  Similarity=0.157  Sum_probs=55.4

Q ss_pred             CCceEEEEEEECCEEEEEccCcc------CccceEEEecCeEEEEccccCCcceeEEEEeC----CceeEEEEcCCHHHH
Q psy2207         222 RNWKRYWFVLKDQVMYKYKASED------IKALLSIPVLGYELEALNEQDNFKYVFQLKHQ----GQDPLVFGADNEQSY  291 (305)
Q Consensus       222 ~~wkrrw~vL~~~~L~~y~~~~d------~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~----~~~~~~f~a~s~e~~  291 (305)
                      +..+.+++.|=...|.+-+...+      ..-.+.|+|.++.|....+  +.++.|.|...    ....|.|.|.|+++.
T Consensus       219 ~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~y~~k~~i~l~~~~v~e~~~--~~~~~F~i~~~~~~~~~~~~~l~a~s~~ek  296 (311)
T 1nty_A          219 RKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVE--GDPCKFALWVGRTPTSDNKIVLKASSIENK  296 (311)
T ss_dssp             CCEEEEEEEEESSEEEEEEEEECTTCCEEEEEEEEEEGGGEEEECCCT--TCTTEEEEEESSSCCTTTCEEEECSSHHHH
T ss_pred             cccceeEEEeccCeEEEEEeeccCCCCceeEEeeeeeccceeeEEccC--CCCceEEEEeCCCCCCCceEEEECCCHHHH
Confidence            45677888776666666553221      1224568888877763322  34578999862    345699999999999


Q ss_pred             HHHHHHHHHHHc
Q psy2207         292 ERWMKAMREATT  303 (305)
Q Consensus       292 ~~Wi~al~~a~~  303 (305)
                      +.|+++|+.|+.
T Consensus       297 ~~W~~~i~~~i~  308 (311)
T 1nty_A          297 QDWIKHIREVIQ  308 (311)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999998864

>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=95.78  E-value=0.007  Score=46.04  Aligned_cols=37  Identities=16%  Similarity=0.380  Sum_probs=34.0

Q ss_pred             CCceEEEEEece-EEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207          11 YNNEFSVIAISR-SFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus        11 ~~~~f~i~~~~k-sf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      ..|.|.|.+.++ .|.|.|.++.+++.|+..|+.++..
T Consensus        94 ~~nTFVlK~~n~~eyi~ea~d~~q~~sWla~Ir~C~~~  131 (136)
T 1v5m_A           94 KDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCVDS  131 (136)
T ss_dssp             CTTEECCBCTTSCBEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ccceEEEEecCCcEEEEEcCCHHHHHHHHHHHHhhcCC
Confidence            569999999888 9999999999999999999998865

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=95.72  E-value=0.0017  Score=61.51  Aligned_cols=91  Identities=16%  Similarity=0.170  Sum_probs=0.0

Q ss_pred             CceeeeeeeccCCCceEEEEEEECCEEEEEccCccC-------------------ccceEEEecCeEEEEccccCCccee
Q psy2207         210 SQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDI-------------------KALLSIPVLGYELEALNEQDNFKYV  270 (305)
Q Consensus       210 ~~~~G~L~~~~~~~wkrrw~vL~~~~L~~y~~~~d~-------------------~p~~~i~L~~~~v~~~~~~~~~~~~  270 (305)
                      .+..|.|.+.  +.++.+|+.|=...|.+.+.....                   .-...|+|.+..|....+..+.+++
T Consensus       253 li~eG~l~~~--~~~~~~~~fLF~d~Ll~~k~~~~~~~~~g~~~~f~~~~~~~~~v~k~~i~l~~~~v~~~~d~~~~~~~  330 (510)
T 3jzy_A          253 LLHSGKLYKT--KSNKELHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNEVLVKLPTDPSSDEPV  330 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEeceEEEc--CCCcEEEEEcccceeEEeeecccccccCCcccccCcccccceeEEcCceehhheEEeccCCCCccccc
Confidence            3556666543  356788888866666665533221                   0134567777777654333456789


Q ss_pred             EEEEeCCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         271 FQLKHQGQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       271 F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      |+|.+.. +.|.|.|.|.++...|+++|++|..
T Consensus       331 F~i~~~~-~~~~l~a~s~~ek~~W~~~i~~ai~  362 (510)
T 3jzy_A          331 FHISHID-RVYTLRTDNINERTAWVQKIKAASE  362 (510)
T ss_dssp             ---------------------------------
T ss_pred             eeeeccc-eeEEeccCCHHHHHHHHHHHHHHHH
Confidence            9998654 5799999999999999999988754

>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}

Probab=95.62  E-value=0.071  Score=48.00  Aligned_cols=79  Identities=19%  Similarity=0.152  Sum_probs=54.4

Q ss_pred             CCceEEEEEEECCEEEEEccCcc---------CccceEEEecCeEEEEccccCCcceeEEEEeC----CceeEEEEcCCH
Q psy2207         222 RNWKRYWFVLKDQVMYKYKASED---------IKALLSIPVLGYELEALNEQDNFKYVFQLKHQ----GQDPLVFGADNE  288 (305)
Q Consensus       222 ~~wkrrw~vL~~~~L~~y~~~~d---------~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~----~~~~~~f~a~s~  288 (305)
                      +..+.+++.|=...|.+-+...+         ..-...|+|..+.|.....  +.++.|.|.+.    +...|.|.|.|.
T Consensus       226 ~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~~--~~~~~F~i~~~~~~~~~~~~~l~a~s~  303 (354)
T 2rgn_B          226 SRGRERRVFLFEQIIIFSEALGGGVRGGTQPGYVYKNSIKVSCLGLEGNLQ--GDPCRFALTSRGPEGGIQRYVLQAADP  303 (354)
T ss_dssp             CCCCEEEEEEESSEEEEEEECC--------CCEEEEEEEEGGGEEEEESGG--GCTTEEEEEEECSSSCEEEEEEEESSH
T ss_pred             CCCceEEEEEeCCcEEEEEeccCCCCCCCCCceEEcceeeccceeeeeccC--CCCceEEEEecCCCCCceEEEEECCCH
Confidence            35677887776666666554321         1224567888777754322  33578999863    246799999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy2207         289 QSYERWMKAMREAT  302 (305)
Q Consensus       289 e~~~~Wi~al~~a~  302 (305)
                      ++.+.|+++|.+|+
T Consensus       304 ~ek~~W~~~i~~ai  317 (354)
T 2rgn_B          304 AISQAWIKHVAQIL  317 (354)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998875

>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}

Probab=95.61  E-value=0.011  Score=51.54  Aligned_cols=36  Identities=17%  Similarity=0.132  Sum_probs=31.3

Q ss_pred             CCCceEEEEEec------eEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAIS------RSFTLRARSANERLEWIDAIQTAI   45 (305)
Q Consensus        10 ~~~~~f~i~~~~------ksf~~~a~s~~ek~~W~~~i~~ai   45 (305)
                      ..+++|.|.+++      ++|.|.|+|++|+++||.+|+.|.
T Consensus       234 ~~~~~F~i~~~~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak  275 (291)
T 3tca_A          234 PTDHCFVLKHPQIQKESQYIKYLCCDDARTLSQWVMGIRIAK  275 (291)
T ss_dssp             SSSCEEEEECTTCCSCCTTSEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence            356899999865      569999999999999999998775

>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A

Probab=95.57  E-value=0.071  Score=47.97  Aligned_cols=78  Identities=12%  Similarity=0.138  Sum_probs=53.3

Q ss_pred             CceEEEEEEECCEEEEEccCccC----------ccceEEEecCeEEEEccccCCcceeEEEEeC-CceeEEEEcCCHHHH
Q psy2207         223 NWKRYWFVLKDQVMYKYKASEDI----------KALLSIPVLGYELEALNEQDNFKYVFQLKHQ-GQDPLVFGADNEQSY  291 (305)
Q Consensus       223 ~wkrrw~vL~~~~L~~y~~~~d~----------~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~-~~~~~~f~a~s~e~~  291 (305)
                      .++.+++.|=+..|.+-+.....          .-...|+|..+.|....  .+.++.|+|... ....|.|.|.|+++.
T Consensus       236 k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~~y~~k~~i~l~~~~v~e~~--~~~~~~F~i~~~~~~~~~~l~a~s~~ek  313 (353)
T 1kz7_A          236 KPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITENV--KGDTKKFEIWYNAREEVYIIQAPTPEIK  313 (353)
T ss_dssp             SCEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGEEEECCB--TTBTTEEEEEETTTTEEEEEECSSHHHH
T ss_pred             CcceeEEEEECCEEEEEEeccccccCCCCCCeEEEEEEeEcccceeeEcC--CCCCceEEEEECCCCcEEEEECCCHHHH
Confidence            35778877766666555543211          12355777777665332  234578999874 346799999999999


Q ss_pred             HHHHHHHHHHH
Q psy2207         292 ERWMKAMREAT  302 (305)
Q Consensus       292 ~~Wi~al~~a~  302 (305)
                      +.|+++|++|+
T Consensus       314 ~~W~~~i~~ai  324 (353)
T 1kz7_A          314 AAWVNAIRKVL  324 (353)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999875

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=95.43  E-value=0.23  Score=48.74  Aligned_cols=92  Identities=15%  Similarity=0.242  Sum_probs=64.0

Q ss_pred             CCCceeeeeeecc---CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEE
Q psy2207         208 SGSQHSGWLHKKS---GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFG  284 (305)
Q Consensus       208 ~~~~~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~  284 (305)
                      ..+++.||+.+.+   ...|++|++.|..+.+.+....  ..+...+.+....-+.... ......|.+...+.+.|++.
T Consensus       557 ~~~i~~G~~~k~~g~f~~~~~rR~~~l~p~r~e~~~e~--~~~~~l~~~~~v~~v~k~~-i~~~~~l~~~~k~~k~f~~~  633 (689)
T 3v5w_A          557 KDCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGEG--EAPQSLLTMEEIQSVEETQ-IKERKCLLLKIRGGKQFILQ  633 (689)
T ss_dssp             SCCCEEEEEEEC-------CEEEEEEEETTEEEEECTT--SCCCEEEEGGGEEEEEEEE-SSSCEEEEEEETTTEEEEEE
T ss_pred             CcceeecccccCCCcccchhhhhccccCCCcccccccC--CCCcceeeeccccccccCc-CCCCcceeeeecCCcEEEEE
Confidence            4467899999987   5789999999998888776543  2334445554433222211 22336888888889999999


Q ss_pred             cCCHHHHHHHHHHHHHHH
Q psy2207         285 ADNEQSYERWMKAMREAT  302 (305)
Q Consensus       285 a~s~e~~~~Wi~al~~a~  302 (305)
                      ++++.++.+|..+|+.+-
T Consensus       634 t~~~~~~~~W~~~i~~~~  651 (689)
T 3v5w_A          634 CDSDPELVQWKKELRDAY  651 (689)
T ss_dssp             CSSHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHH
Confidence            999999999999998654

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.43  E-value=0.027  Score=43.37  Aligned_cols=38  Identities=16%  Similarity=0.253  Sum_probs=32.4

Q ss_pred             cCCCceEEEEEec----eEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207           9 EDYNNEFSVIAIS----RSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus         9 ~~~~~~f~i~~~~----ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      ...++.|.|..|.    |.|.|.++|+++..+||++++.|-.
T Consensus        71 ~~~kf~ikl~iPs~~g~r~y~l~cdsEeqy~~WMaA~rlAsk  112 (137)
T 2ys3_A           71 SGQKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLASK  112 (137)
T ss_dssp             GGTBEEEEEEEECSSSEEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred             cCCceEEEEEccCCCCceEEEEECCCHHHHHHHHHHHHHhcc
Confidence            3567777888876    9999999999999999999997653

>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1

Probab=94.57  E-value=0.23  Score=44.95  Aligned_cols=55  Identities=16%  Similarity=0.227  Sum_probs=40.3

Q ss_pred             ceEEEecCeEEEEccccCC-cceeEEEEeC-------CceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         248 LLSIPVLGYELEALNEQDN-FKYVFQLKHQ-------GQDPLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       248 ~~~i~L~~~~v~~~~~~~~-~~~~F~l~~~-------~~~~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      ...|+|.+..|...++.+. ....|+|.+.       ....|.|+|.|.++.+.|+++|.+|+
T Consensus       303 k~~i~l~~~~v~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~l~A~s~~eK~~W~~~i~~~i  365 (377)
T 1foe_A          303 RHMIPTEALQVRALPSADAEANAVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVHSIL  365 (377)
T ss_dssp             EEEEEGGGEEEECCCCTTTTSCCEEEEEECCBTGGGBCCEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             eeeccccceEEEecCCCccchhhHHHHHhccccccCCCcceEEEEeCCHHHHHHHHHHHHHHh
Confidence            4678898888875433322 2245888742       24679999999999999999998876

>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}

Probab=94.34  E-value=0.0063  Score=47.15  Aligned_cols=38  Identities=16%  Similarity=0.238  Sum_probs=32.1

Q ss_pred             CCcccccccccccccccccccccccceeccCccCCeecccCC
Q psy2207          83 RVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYK  124 (305)
Q Consensus        83 ~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~  124 (305)
                      .+..|++|+.+    ...+-+.+-|.++|..||+.|+.|+..
T Consensus        35 ~N~~CaDCga~----~P~WaS~n~GvfiC~~CsgiHR~LG~h   72 (138)
T 2owa_A           35 ENRTCFDCESR----NPTWLSLSFAVFICLNCSSDHRKMGVH   72 (138)
T ss_dssp             GGGBCTTTCCB----SCCEEETTTTEEECHHHHHHHHTTCTT
T ss_pred             CCCcCCCCcCC----CCCeEEecCCEEEhHhhhHHHhCCCCC
Confidence            36789999985    466778899999999999999999753

>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A

Probab=94.30  E-value=0.0053  Score=47.78  Aligned_cols=36  Identities=25%  Similarity=0.349  Sum_probs=31.6

Q ss_pred             CcccccccccccccccccccccccceeccCccCCeecccC
Q psy2207          84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY  123 (305)
Q Consensus        84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~  123 (305)
                      +..|++|+.+    ...+-+.+-|.++|..||+.|+.|+.
T Consensus        25 N~~CaDCg~~----~P~WaS~n~GvfiC~~CsgiHR~LG~   60 (140)
T 2olm_A           25 NRKCFDCDQR----GPTYVNMTVGSFVCTSCSGSLRGLNP   60 (140)
T ss_dssp             GGSCTTTCSS----CCCEEETTTTEEECHHHHHHHTTSSS
T ss_pred             CCcCCCCCCC----CCCceeeccCEEEchhccchhccCCC
Confidence            6689999985    56777889999999999999999975

>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}

Probab=94.25  E-value=0.0055  Score=47.31  Aligned_cols=36  Identities=22%  Similarity=0.386  Sum_probs=31.4

Q ss_pred             CcccccccccccccccccccccccceeccCccCCeecccC
Q psy2207          84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY  123 (305)
Q Consensus        84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~  123 (305)
                      +..|++|+.+    ...+.+.+-|.++|..||+.|+.|+.
T Consensus        27 N~~CaDCg~~----~P~WaS~n~GvfiC~~CsgiHR~lG~   62 (134)
T 2iqj_A           27 NKFCADCQSK----GPRWASWNIGVFICIRCAGIHRNLGV   62 (134)
T ss_dssp             GGBCTTTCCB----SCCEEETTTTEEECHHHHHHHHHHCT
T ss_pred             CCcCCcCcCC----CCCeEEecCCEEEhHhhhHHHhcCCC
Confidence            6789999995    46677888999999999999999975

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=94.21  E-value=0.2  Score=43.19  Aligned_cols=56  Identities=16%  Similarity=0.195  Sum_probs=42.4

Q ss_pred             ceEEEecCeEEEEc-cccCCcceeEEEEeC-CceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         248 LLSIPVLGYELEAL-NEQDNFKYVFQLKHQ-GQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       248 ~~~i~L~~~~v~~~-~~~~~~~~~F~l~~~-~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      .+.|+|.-+.+... ...+.+.+.|+|... +..+.+++|+|.+++.+|+++|..++.
T Consensus       205 ~~~ipL~m~~~tR~~~~~d~~~~~fev~s~dG~~t~~l~~~d~~~a~~W~~ai~~~i~  262 (263)
T 1z87_A          205 AKHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG  262 (263)
T ss_dssp             CEEEESSSEEEEEECCSSCSSSCEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             ccccCcceeeeeeeccccCCCCceEEEECCCCCeeEEEEECCHHHHHHHHHHHHHHhc
Confidence            45778877666632 122346789999876 445689999999999999999998864

>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.90  E-value=0.0077  Score=47.23  Aligned_cols=38  Identities=18%  Similarity=0.311  Sum_probs=32.1

Q ss_pred             CCcccccccccccccccccccccccceeccCccCCeecccCC
Q psy2207          83 RVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYK  124 (305)
Q Consensus        83 ~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~  124 (305)
                      .+..|++|+.+    ...+-+.+-|.++|..|++.|+.|+..
T Consensus        28 ~N~~CaDCga~----~P~WaS~n~GvfiC~~CsgiHR~LG~h   65 (149)
T 2crw_A           28 TNKVCFDCGAK----NPSWASITYGVFLCIDCSGSHRSLGVH   65 (149)
T ss_dssp             TTSBCSSSCCB----SCCCEETTTTEECCHHHHHHHHHHCTT
T ss_pred             CCCcCCCCcCC----CCCcEEeccCEEEchhcchhhccCCCC
Confidence            36789999985    566778899999999999999999753

>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}

Probab=93.77  E-value=0.0093  Score=47.17  Aligned_cols=38  Identities=18%  Similarity=0.252  Sum_probs=31.8

Q ss_pred             CCcccccccccccccccccccccccceeccCccCCeecccCC
Q psy2207          83 RVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYK  124 (305)
Q Consensus        83 ~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~  124 (305)
                      .+..|++|+.+    ...+.+.+-|.++|..||+.|+.|+..
T Consensus        21 ~N~~CaDCga~----~P~WaS~nlGvflCi~CSGiHR~LG~h   58 (163)
T 3sub_A           21 SNNKCFDCGIS----NPDWVSVNHGIFLCINCSGVHRSLGVH   58 (163)
T ss_dssp             GGGBCTTTCCB----SCCEEETTTTEEECHHHHHHHHHTCTT
T ss_pred             CCCccccCCCC----CCCeEEecCCeeEHHhhhHHhcCCCCC
Confidence            36689999995    556777888999999999999999754

>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.70  E-value=0.0073  Score=47.04  Aligned_cols=37  Identities=19%  Similarity=0.346  Sum_probs=31.7

Q ss_pred             CCcccccccccccccccccccccccceeccCccCCeecccC
Q psy2207          83 RVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY  123 (305)
Q Consensus        83 ~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~  123 (305)
                      .+..|++|+.+    ...+.+.+-|.++|..||+.|+.|+.
T Consensus        28 ~N~~CaDCga~----~P~WaS~n~GvfiC~~CsgiHR~LG~   64 (141)
T 2crr_A           28 DNKYCADCEAK----GPRWASWNIGVFICIRCAGIHRNLGV   64 (141)
T ss_dssp             GGSSCSSSCCS----SCCSEETTTTEECCHHHHHHHHHHCT
T ss_pred             cCCcCCCCCCC----CCCeEEeccCeEEhhhhhHhHhcCCC
Confidence            36789999995    56677888999999999999999974

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=93.51  E-value=0.065  Score=55.32  Aligned_cols=41  Identities=27%  Similarity=0.516  Sum_probs=35.4

Q ss_pred             CCcCCCceEEEEEece-EEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207           7 QTEDYNNEFSVIAISR-SFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus         7 ~~~~~~~~f~i~~~~k-sf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      +.+..+|+|.|.+... +|.|+|+|++||+.|+++|+.+...
T Consensus       506 d~~~~~~~F~I~~~~~~~~~L~A~S~eeK~~Wi~~I~~~q~k  547 (1049)
T 3ksy_A          506 DTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYR  547 (1049)
T ss_dssp             CSSSCCSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCccccceEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence            4456789999998764 9999999999999999999987654

>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.06  E-value=0.047  Score=37.37  Aligned_cols=50  Identities=22%  Similarity=0.551  Sum_probs=39.7

Q ss_pred             CCCccccccccccc-ccccccccccccceeccCccCCeecccCCCCccccccHhhHHH
Q psy2207          82 SRVSMCQRCTSVFT-VTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHY  138 (305)
Q Consensus        82 ~~~~~C~~C~~~f~-~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~  138 (305)
                      .....|+.|..+|+ ++++-.-|+.|-.-||.+|-.+...       ..=.|..|++.
T Consensus        23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~~~-------~~W~C~VC~k~   73 (76)
T 2csz_A           23 YSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQESN-------GTWRCKVCSGP   73 (76)
T ss_dssp             CCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEECST-------TCEEEHHHHSS
T ss_pred             CCccchhhhCccccccccCCCcCcccChhhcccccccCCC-------CCEEEeeCchh
Confidence            34679999999999 4678899999999999999876421       45677777653

>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}

Probab=92.93  E-value=0.015  Score=45.33  Aligned_cols=38  Identities=18%  Similarity=0.323  Sum_probs=31.7

Q ss_pred             CCcccccccccccccccccccccccceeccCccCCeecccCC
Q psy2207          83 RVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYK  124 (305)
Q Consensus        83 ~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~  124 (305)
                      .+..|++|+.+    ...+-+.+-|.++|..||+.|+.|+..
T Consensus        37 ~N~~CaDCga~----~P~WaS~nlGvfiC~~CSgiHR~LG~h   74 (147)
T 3dwd_A           37 ENNVCFECGAF----NPQWVSVTYGIWICLECSGRHRGLGVH   74 (147)
T ss_dssp             TTTBCTTTCCB----SCCEEETTTTEEECHHHHHHHHHHCTT
T ss_pred             CCCccCCCCCC----CCCeEEecccEeEhHhhChHHhcCCCC
Confidence            36789999995    456677888999999999999998753

>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}

Probab=92.88  E-value=0.013  Score=45.62  Aligned_cols=36  Identities=19%  Similarity=0.311  Sum_probs=31.1

Q ss_pred             CcccccccccccccccccccccccceeccCccCCeecccC
Q psy2207          84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY  123 (305)
Q Consensus        84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~  123 (305)
                      +..|++|+.+    ...+-+.+-|.++|..||+.|+.|+.
T Consensus        37 N~~CaDCga~----~P~WaS~n~GvfiC~~CsgiHR~LG~   72 (144)
T 2p57_A           37 NKACFDCGAK----NPSWASITYGVFLCIDCSGVHRSLGV   72 (144)
T ss_dssp             GGBCTTTCCB----SCCEEEGGGTEEECHHHHHHHHHHCT
T ss_pred             CCcCCCCcCC----CCCeEEeccCEEEhhhchHHHcCCCC
Confidence            5689999985    56677888999999999999999875

>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.73  E-value=0.23  Score=37.61  Aligned_cols=37  Identities=16%  Similarity=0.287  Sum_probs=31.9

Q ss_pred             CCceEEEEEeceEEEEEeCC---------------HHHHHHHHHHHHHHHHH
Q psy2207          11 YNNEFSVIAISRSFTLRARS---------------ANERLEWIDAIQTAIKE   47 (305)
Q Consensus        11 ~~~~f~i~~~~ksf~~~a~s---------------~~ek~~W~~~i~~ai~~   47 (305)
                      .+|+|+|.|...+|.+.+..               .+....|..+|++|+.-
T Consensus        73 ~phcFEi~T~~~~y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqALmP  124 (129)
T 2d9z_A           73 NPHCFEIITDTMVYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQALMS  124 (129)
T ss_dssp             CCCSEEEECSSCEEEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEECCEEEEEccCCCCCCCCccccccccchHHHHHHHHHHHHhccC
Confidence            46999999999999998743               68899999999999853

>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1

Probab=91.79  E-value=0.67  Score=37.21  Aligned_cols=56  Identities=13%  Similarity=0.134  Sum_probs=42.2

Q ss_pred             ceEEEecCeEEEEc-cccCCcceeEEEEeCCc-eeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         248 LLSIPVLGYELEAL-NEQDNFKYVFQLKHQGQ-DPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       248 ~~~i~L~~~~v~~~-~~~~~~~~~F~l~~~~~-~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      ...|||.-+.|... ...+.....|+|...++ .+-+|.|.|..++..|+++|...+.
T Consensus       120 ~~~IPLkMayvtR~~~~tD~e~r~fEv~s~DG~~t~iLrc~D~a~a~~Wf~aI~sni~  177 (178)
T 2adz_A          120 AKHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG  177 (178)
T ss_dssp             CEEEETTTCEEEEECCSSCCSSCEEEEEETTTTEEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred             ceeecHHHHHHHHhccCCCCCccEEEEEcCCCCeeEEEEeCCHHHHHHHHHHHHHhcc
Confidence            56899977777631 11223568999987544 4679999999999999999987653

>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1

Probab=90.46  E-value=0.26  Score=37.61  Aligned_cols=38  Identities=18%  Similarity=0.409  Sum_probs=32.2

Q ss_pred             CCceEEEEEec--eEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy2207          11 YNNEFSVIAIS--RSFTLRARSANERLEWIDAIQTAIKEN   48 (305)
Q Consensus        11 ~~~~f~i~~~~--ksf~~~a~s~~ek~~W~~~i~~ai~~~   48 (305)
                      ...+|.|+-..  +++.|.|.|++|.+.|+.+|+.-+...
T Consensus        84 ~~~~FsIiy~~~~k~LdlvA~s~~e~~~Wv~gL~~L~~~~  123 (131)
T 1mai_A           84 EDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRKIIHHS  123 (131)
T ss_dssp             GGGEEEEEESSSCCCEEEECSSHHHHHHHHHHHHHHHC--
T ss_pred             ccceEEEEECCCCceEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence            46799999976  699999999999999999999877553

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}

Probab=90.05  E-value=0.32  Score=41.64  Aligned_cols=36  Identities=14%  Similarity=0.170  Sum_probs=30.9

Q ss_pred             CceEEEEEece------EEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207          12 NNEFSVIAISR------SFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus        12 ~~~f~i~~~~k------sf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      +++|.|..+..      .+.|.|++++++++|+.+|..|.-.
T Consensus       200 ~~~F~ik~~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak~g  241 (256)
T 3hk0_A          200 DHGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAFRLLKYG  241 (256)
T ss_dssp             SEEEEEEETTCSSCCTTCEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEcccccCCCceEEEEEeCCHHHHHHHHHHHHHHHhh
Confidence            68999996544      4999999999999999999988754

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=89.75  E-value=0.051  Score=47.69  Aligned_cols=38  Identities=21%  Similarity=0.319  Sum_probs=32.2

Q ss_pred             CCcccccccccccccccccccccccceeccCccCCeecccCC
Q psy2207          83 RVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYK  124 (305)
Q Consensus        83 ~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~  124 (305)
                      .+..|++|+.+    ...|-+.+.|.++|..||+.|+.|+..
T Consensus        41 ~n~~c~dc~~~----~p~w~s~~~g~~~c~~cs~~hr~lg~~   78 (301)
T 2b0o_E           41 GNSQCCDCGAA----DPTWLSTNLGVLTCIQCSGVHRELGVR   78 (301)
T ss_dssp             TTTBCTTTCCB----SCCEEETTTTEEECHHHHHHHHHHCTT
T ss_pred             CCCcCCCCCCC----CCCeEEeecCeEEcHHHHHHHHhhCCC
Confidence            36789999995    567778899999999999999998753

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=89.37  E-value=0.055  Score=48.19  Aligned_cols=38  Identities=18%  Similarity=0.323  Sum_probs=32.2

Q ss_pred             CCcccccccccccccccccccccccceeccCccCCeecccCC
Q psy2207          83 RVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYK  124 (305)
Q Consensus        83 ~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~  124 (305)
                      .+..|++|+.+    ...+.+.+-|.++|..||+.|+.|+..
T Consensus        36 ~n~~c~dc~~~----~~~~~~~~~~~~~c~~c~~~hr~~~~~   73 (329)
T 3o47_A           36 ENNVCFECGAF----NPQWVSVTYGIWICLECSGRHRGLGVH   73 (329)
T ss_dssp             TTTBCTTTCCB----SCCEEEGGGTEEECHHHHHHHHHHCTT
T ss_pred             CCCcCCCCCCC----CCCeEEecCCEEEChhhhhhhcccCCC
Confidence            46789999995    456788899999999999999998753

>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1

Probab=89.14  E-value=0.46  Score=33.16  Aligned_cols=30  Identities=23%  Similarity=0.645  Sum_probs=24.1

Q ss_pred             CCCcccccccccccccccccccccccceeccC
Q psy2207          82 SRVSMCQRCTSVFTVTFRRHHCRACGKVVCGP  113 (305)
Q Consensus        82 ~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~  113 (305)
                      .....|..|.+.-.++ ..-+|| ||.+||+.
T Consensus        23 ~~~~rC~~C~kkvgl~-~~f~Cr-Cg~~FC~~   52 (85)
T 1wff_A           23 KIMKHCFLCGKKTGLA-TSFECR-CGNNFCAS   52 (85)
T ss_dssp             CCCCBCSSSCCBCSSS-SCEECT-TCCEECTT
T ss_pred             ccCccchhhCCeeccc-CCeEcC-CCCEeccc
Confidence            3457899999988875 357897 99999965

>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=88.74  E-value=0.25  Score=37.26  Aligned_cols=37  Identities=16%  Similarity=0.337  Sum_probs=30.4

Q ss_pred             CCCceEEEEEeceEEEEEeC---C--------HHHHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAISRSFTLRAR---S--------ANERLEWIDAIQTAIK   46 (305)
Q Consensus        10 ~~~~~f~i~~~~ksf~~~a~---s--------~~ek~~W~~~i~~ai~   46 (305)
                      ..+|+|+|.|..++|.+.+.   .        .+....|..+|++|+.
T Consensus        72 ~~~hcFEi~T~~~~yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrqALm  119 (125)
T 2coa_A           72 TNPHCFEIVTANATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQALM  119 (125)
T ss_dssp             SCCEEEEEECSSCCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHGG
T ss_pred             CCCceEEEEeCCeEEEEccCCCCCCCCcCccccHHHHHHHHHHHhhcc
Confidence            35699999999999999874   1        2568899999999874

>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=88.66  E-value=0.29  Score=32.21  Aligned_cols=27  Identities=33%  Similarity=0.866  Sum_probs=22.5

Q ss_pred             CcccccccccccccccccccccccceeccC
Q psy2207          84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGP  113 (305)
Q Consensus        84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~  113 (305)
                      ...|..|.+...++  .-.|| ||.+||+.
T Consensus        15 ~~rC~~C~kkvgl~--~f~Cr-Cg~~FC~~   41 (64)
T 1wfh_A           15 PNRCTVCRKRVGLT--GFMCR-CGTTFCGS   41 (64)
T ss_dssp             CCCCTTTCCCCCTT--CEECS-SSCEECTT
T ss_pred             CCcChhhCCccCcc--CEEee-cCCEeccc
Confidence            46899999988776  67895 99999975

>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1

Probab=88.51  E-value=0.56  Score=31.77  Aligned_cols=27  Identities=33%  Similarity=0.861  Sum_probs=22.6

Q ss_pred             CcccccccccccccccccccccccceeccC
Q psy2207          84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGP  113 (305)
Q Consensus        84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~  113 (305)
                      ...|..|.+...++  .-.|| ||.+||+.
T Consensus        25 ~nRC~~CrKkvgL~--gf~Cr-Cg~~FCs~   51 (74)
T 1wfl_A           25 KNRCFMCRKKVGLT--GFDCR-CGNLFCGL   51 (74)
T ss_dssp             TTBCSSSCCBCGGG--CEECT-TSCEECSS
T ss_pred             CCcChhhCCccccc--CeecC-CCCEechh
Confidence            56899999988776  47899 99999964

>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=87.45  E-value=0.78  Score=31.05  Aligned_cols=30  Identities=33%  Similarity=0.825  Sum_probs=24.1

Q ss_pred             cCCCcccccccccccccccccccccccceeccC
Q psy2207          81 DSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGP  113 (305)
Q Consensus        81 d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~  113 (305)
                      ......|..|.....++  .-.| .||.+||..
T Consensus        22 k~~~~RC~~C~kkvgL~--~f~C-rCg~~FCs~   51 (74)
T 1wfp_A           22 KSTATRCLSCNKKVGVT--GFKC-RCGSTFCGT   51 (74)
T ss_dssp             TCCCCBCSSSCCBCTTT--CEEC-TTSCEECTT
T ss_pred             cccCccchhhcCccccc--ceEe-ccCCEeccc
Confidence            34567899999988876  6889 599999965

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=86.95  E-value=0.1  Score=47.35  Aligned_cols=38  Identities=18%  Similarity=0.301  Sum_probs=32.4

Q ss_pred             CCcccccccccccccccccccccccceeccCccCCeecccCC
Q psy2207          83 RVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYK  124 (305)
Q Consensus        83 ~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~  124 (305)
                      .+..|++|+.+    ...+-+.+-|.++|..||+.|+.|+..
T Consensus        44 ~n~~c~dc~~~----~p~w~s~~~g~~~c~~c~~~hr~lg~~   81 (368)
T 3jue_A           44 GNAQCCDCREP----APEWASINLGVTLCIQCSGIHRSLGVH   81 (368)
T ss_dssp             TTTBCTTTCCB----SCCEEETTTTEEECHHHHHHHHHHCTT
T ss_pred             CcCcCCCCCCC----CCCeEEecCCeEEcHhHHHHHhccCCC
Confidence            47799999995    566778899999999999999998753

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=86.43  E-value=0.64  Score=40.32  Aligned_cols=37  Identities=11%  Similarity=0.068  Sum_probs=31.1

Q ss_pred             CCceEEEEEec------eEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207          11 YNNEFSVIAIS------RSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus        11 ~~~~f~i~~~~------ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      -+++|.|..++      ..++|.|++++++..||.+|.-|.-.
T Consensus       225 t~~~F~ik~~~~~~~~~~~~~~caede~~~~~Wv~Air~ak~g  267 (281)
T 4gmv_A          225 TDYCLVLKHPQIQKKSQYIKYLCCDDVRTLHQWVNGIRIAKYG  267 (281)
T ss_dssp             CSCEEEEECTTCCSCCTTCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             CCcEEEEecCccCCCCCceEEEEeCCHHHHHHHHHHHHHHhhC
Confidence            36799999754      36999999999999999999887643

>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1

Probab=86.34  E-value=4.1  Score=30.34  Aligned_cols=91  Identities=12%  Similarity=0.118  Sum_probs=59.7

Q ss_pred             CCceeeeeeeccC-CCceEEEEEEECCEEEEEccCc----c-CccceEEEecCeEEEEccccCCcceeEEEEeCC-ceeE
Q psy2207         209 GSQHSGWLHKKSG-RNWKRYWFVLKDQVMYKYKASE----D-IKALLSIPVLGYELEALNEQDNFKYVFQLKHQG-QDPL  281 (305)
Q Consensus       209 ~~~~~G~L~~~~~-~~wkrrw~vL~~~~L~~y~~~~----d-~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~-~~~~  281 (305)
                      ..++.|.+..... +.-+.|++-|=+..|.+-+...    + ..-...|.+..+.+...... +.+..|+|...+ ...|
T Consensus         9 ~Ll~q~~f~V~~~~~k~~eR~vFLFe~~ilf~K~~~~~~~~~Y~~K~~ikl~~~~lte~~~~-~d~~kFeiw~~~~~~~~   87 (119)
T 1fho_A            9 RIIRHDAFQVWEGDEPPKLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYNIRQHTTD-EDTIVLQPQEPGLPSFR   87 (119)
T ss_dssp             CSSEEEEEEECSTTCSCEEEEEEEETTEEEEEEECCSSSSCCCSSCCEEESSSCEEEEECTT-CCEEEEECCSTTCCCBC
T ss_pred             CccccCceEEEeCCCCcceEEEEEecCcEEEEEEecCCCCCcEEEeeEEeeceeEEEecCCC-CCCcEEEEccCCCCceE
Confidence            3456677766542 3445666666666666666431    1 12345788888888754331 234679997654 3467


Q ss_pred             EE--EcCCHH-HHHHHHHHHHH
Q psy2207         282 VF--GADNEQ-SYERWMKAMRE  300 (305)
Q Consensus       282 ~f--~a~s~e-~~~~Wi~al~~  300 (305)
                      .+  .|.|.+ ..+.|++.|++
T Consensus        88 il~~qA~s~e~~K~~Wv~~I~~  109 (119)
T 1fho_A           88 IKPKDFETSEYVRKAWLRDIAE  109 (119)
T ss_dssp             CCCCSSSSCSHHHHHHHHHHHT
T ss_pred             EEeeecCCcHHHHHHHHHHHHH
Confidence            77  899999 99999999976

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=84.66  E-value=0.74  Score=42.32  Aligned_cols=39  Identities=28%  Similarity=0.394  Sum_probs=31.3

Q ss_pred             CCCceEEEEEeceEE----EEEeCCHHHHHHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAISRSF----TLRARSANERLEWIDAIQTAIKEN   48 (305)
Q Consensus        10 ~~~~~f~i~~~~ksf----~~~a~s~~ek~~W~~~i~~ai~~~   48 (305)
                      ..+|.|.|.+++...    .+.+++++|+++|+.+|+.++...
T Consensus        68 ~~~~~f~I~~~~~~~~~~r~~~~~~~ee~e~W~~ai~~~i~~~  110 (446)
T 4ejn_A           68 PRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGL  110 (446)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHCCC-
T ss_pred             CCCceeEEEcCCCceeeeeEEecCCHHHHHHHHHHHHhhhhhh
Confidence            447899998765433    689999999999999999987543

>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=84.35  E-value=0.68  Score=30.46  Aligned_cols=27  Identities=30%  Similarity=0.806  Sum_probs=22.3

Q ss_pred             CcccccccccccccccccccccccceeccC
Q psy2207          84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGP  113 (305)
Q Consensus        84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~  113 (305)
                      ...|..|.+...++  .-.| .||.+||+.
T Consensus        15 ~~rC~~C~kkvgl~--~f~C-rCg~~FC~~   41 (64)
T 1wg2_A           15 NNRCFSCNKKVGVM--GFKC-KCGSTFCGS   41 (64)
T ss_dssp             SCSCTTTCCCCTTS--CEEC-TTSCEECSS
T ss_pred             CCcChhhCCccccc--CeEe-ecCCEeccc
Confidence            46899999987766  6789 599999965

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=84.11  E-value=0.17  Score=47.59  Aligned_cols=36  Identities=22%  Similarity=0.321  Sum_probs=30.0

Q ss_pred             CcccccccccccccccccccccccceeccCccCCeecccC
Q psy2207          84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEY  123 (305)
Q Consensus        84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~  123 (305)
                      +..|++|+.+-    ..+.+.+-|.++|-.||+.|+.|+.
T Consensus        23 n~~c~dc~~~~----p~w~s~~~~~~~c~~c~~~hr~lg~   58 (497)
T 3lvq_E           23 NSQCCDCGAAD----PTWLSTNLGVLTCIQCSGVHRELGV   58 (497)
T ss_dssp             TTBCTTTCCBS----CCEEETTTTEEECHHHHHHHHHHCT
T ss_pred             CCcccCCCCCC----CCEEEechhHHhHHhhHHHHHhhcc
Confidence            67899999854    4566778899999999999999864

>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C

Probab=83.65  E-value=1.1  Score=28.70  Aligned_cols=53  Identities=23%  Similarity=0.533  Sum_probs=39.1

Q ss_pred             CCCcccccccc-cccccccccccccccceeccCccCCeecccCCCCccccccHhhHHH
Q psy2207          82 SRVSMCQRCTS-VFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHY  138 (305)
Q Consensus        82 ~~~~~C~~C~~-~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~  138 (305)
                      ++...|.+|.+ +|.. ---|.|..|-.-+|++|.++ .+|.  .++-.=||.-|..+
T Consensus         7 ~d~~~C~iC~KTKFAD-G~Gh~C~yCk~r~CaRCGg~-v~lr--~~k~~WvC~lC~k~   60 (62)
T 2a20_A            7 GDAPTCGICHKTKFAD-GCGHNCSYCQTKFCARCGGR-VSLR--SNKVMWVCNLCRKQ   60 (62)
T ss_dssp             SCCCCCSSSSCSCCCS-SCCEEBTTTCCEECTTSEEE-EESS--TTCEEEEEHHHHHH
T ss_pred             CCcchhhhhccceecc-CCCccccccCCeeecccCCE-eeec--CCeEEEEehhhhhc
Confidence            34668999977 4542 23489999999999999985 4453  46777788888664

>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A

Probab=82.94  E-value=13  Score=30.30  Aligned_cols=32  Identities=19%  Similarity=0.369  Sum_probs=28.6

Q ss_pred             eeEEEEeCCceeEEEEcCCHHHHHHHHHHHHH
Q psy2207         269 YVFQLKHQGQDPLVFGADNEQSYERWMKAMRE  300 (305)
Q Consensus       269 ~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~  300 (305)
                      ..|.|....+..+.|.|+|+++...|++.|+.
T Consensus       116 laFSii~~~~~~L~fvA~s~~~~~~W~DGL~~  147 (203)
T 3a98_B          116 LAFSILYDSNCQLNFIAPDKHEYCIWTDGLNA  147 (203)
T ss_dssp             GEEEEEETTTEEEEEECSSHHHHHHHHHHHHH
T ss_pred             eEEEEecCCCceEEEecCCHHHHHHHHHHHHH
Confidence            68999987767899999999999999999864

>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1

Probab=82.54  E-value=0.11  Score=39.19  Aligned_cols=37  Identities=8%  Similarity=0.042  Sum_probs=28.6

Q ss_pred             CceEEEEEec--eEEEE--EeCCHH-HHHHHHHHHHHHHHHH
Q psy2207          12 NNEFSVIAIS--RSFTL--RARSAN-ERLEWIDAIQTAIKEN   48 (305)
Q Consensus        12 ~~~f~i~~~~--ksf~~--~a~s~~-ek~~W~~~i~~ai~~~   48 (305)
                      +..|+|-.+.  ..|.+  +|.|.+ .|+.|++.|.++++..
T Consensus        73 ~~kFeiw~~~~~~~~il~~qA~s~e~~K~~Wv~~I~~~~~~~  114 (119)
T 1fho_A           73 TIVLQPQEPGLPSFRIKPKDFETSEYVRKAWLRDIAEEQEKY  114 (119)
T ss_dssp             EEEEECCSTTCCCBCCCCCSSSSCSHHHHHHHHHHHTCCHHH
T ss_pred             CcEEEEccCCCCceEEEeeecCCcHHHHHHHHHHHHHHHHHH
Confidence            4668885544  46677  999999 9999999999866554

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=82.40  E-value=0.21  Score=43.07  Aligned_cols=37  Identities=19%  Similarity=0.306  Sum_probs=30.6

Q ss_pred             CcccccccccccccccccccccccceeccCccCCeecccCC
Q psy2207          84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYK  124 (305)
Q Consensus        84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~  124 (305)
                      +..|.+|+.+-    ..+..-+-|..+|..||+.|+.|+..
T Consensus        17 n~~c~dc~~~~----p~w~s~~~g~~~c~~c~~~hr~lg~~   53 (278)
T 1dcq_A           17 NDVCCDCGAPD----PTWLSTNLGILTCIECSGIHRELGVH   53 (278)
T ss_dssp             TTBCTTTCCBS----CCEEETTTTEEECHHHHHHHHHHCTT
T ss_pred             CCcCCCCCCCC----CCeEEecCCeEEcHHHHHHHhhcCCC
Confidence            56899999954    45667788999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	305
d1wfka_	88	g.50.1.1 (A:) Zinc finger FYVE domain containing p	4e-18
d1joca1	64	g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens)	7e-18
d1dvpa2	72	g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila me	7e-17
d1droa_	122	b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila	2e-15
d1upqa_	107	b.55.1.1 (A:) Phosphoinositol 3-phosphate binding	7e-15
d1u5ea1	209	b.55.1.1 (A:14-222) Src-associated adaptor protein	2e-14
d1plsa_	113	b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [Ta	4e-14
d1v88a_	130	b.55.1.1 (A:) Oxysterol binding protein-related pr	5e-14
d1v89a_	118	b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KI	8e-14
d1vfya_	67	g.50.1.1 (A:) vps27p protein {Baker's yeast (Sacch	1e-13
d1wgqa_	109	b.55.1.1 (A:) FYVE, RhoGEF and PH domain containin	1e-13
d2cofa1	95	b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens)	2e-13
d1eaza_	103	b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId:	5e-13
d1eaza_	103	b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId:	9e-05
d1y02a2	51	g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger pro	1e-12
d1faoa_	100	b.55.1.1 (A:) Dual adaptor of phosphotyrosine and	1e-12
d1faoa_	100	b.55.1.1 (A:) Dual adaptor of phosphotyrosine and	0.001
d1x1ga1	116	b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapie	2e-12
d1fgya_	127	b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 1	7e-12
d1fgya_	127	b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 1	0.001
d2i5fa1	104	b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapie	1e-11
d2i5fa1	104	b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapie	0.002
d1v5ua_	117	b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (M	3e-11
d1v5ua_	117	b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (M	0.001
d1zbdb_	124	g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat	5e-11
d2coca1	99	b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain cont	7e-11
d2coda1	102	b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo	1e-10
d2coda1	102	b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo	0.001
d1v5pa_	126	b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId:	1e-10
d1u5da1	106	b.55.1.1 (A:108-213) Src kinase-associated phospho	1e-10
d1u5da1	106	b.55.1.1 (A:108-213) Src kinase-associated phospho	0.001
d1u5fa1	111	b.55.1.1 (A:109-219) Src-associated adaptor protei	2e-10
d2dyna_	111	b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId	2e-10
d2elba2	101	b.55.1.1 (A:274-374) DCC-interacting protein 13-al	3e-10
d1v5ma_	136	b.55.1.1 (A:) SH2 and PH domain-containing adapter	3e-10
d1wjma_	123	b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens),	5e-10
d1wg7a_	150	b.55.1.1 (A:) Dedicator of cytokinesis protein 9,	5e-10
d1wi1a_	126	b.55.1.1 (A:) Calcium-dependent activator protein	1e-09
d1x1fa1	136	b.55.1.1 (A:8-143) Signal-transducing adaptor prot	2e-09
d2j59m1	133	b.55.1.1 (M:931-1063) Rho GTPase-activating protei	5e-09
d2fjla1	101	b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phosph	2e-08
d1btna_	106	b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus),	2e-08
d1unqa_	118	b.55.1.1 (A:) Rac-alpha serine/threonine kinase {H	4e-08
d1omwa2	119	b.55.1.1 (A:550-668) G-protein coupled receptor ki	7e-08
d1btka_	169	b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Hom	2e-07
d1btka_	169	b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Hom	3e-05
d1qqga1	103	b.55.1.2 (A:12-114) Insulin receptor substrate 1,	4e-07
d1w1ha_	147	b.55.1.1 (A:) 3-phosphoinositide dependent protein	5e-07
d2coaa1	112	b.55.1.1 (A:8-119) Protein kinase c, d2 type {Huma	7e-06
d1zc3b1	109	b.55.1.1 (B:171-279) Exocyst complex protein EXO84	1e-04
d1zc3b1	109	b.55.1.1 (B:171-279) Exocyst complex protein EXO84	4e-04
d1kz7a2	147	b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse	2e-04
d1dbha2	133	b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {H	0.002
d1xcga2	140	b.55.1.1 (A:942-1081) Rho guanine nucleotide excha	0.002
d1ki1b2	142	b.55.1.1 (B:1439-1580) GEF of intersectin {Human (	0.003

>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Zinc finger FYVE domain containing protein 19
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.5 bits (185), Expect = 4e-18
 Identities = 17/65 (26%), Positives = 29/65 (44%)

Query: 84  VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQEF 143
            S C  C   FT+  + + C+ CG+  C  C  + A +        +VC++C+  L +  
Sbjct: 9   ESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRGS 68

Query: 144 DDEDS 148
            D  S
Sbjct: 69  SDNAS 73

>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Eea1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.9 bits (181), Expect = 7e-18
 Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 78  WIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYH 137
           W  D+ V  C  C   F+VT RRHHCR CG + C  CS   A     K +  RVC+ C++
Sbjct: 2   WAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSSK-KPVRVCDACFN 60

Query: 138 YL 139
            L
Sbjct: 61  DL 62

>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 72

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 71.6 bits (175), Expect = 7e-17
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 73  KVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPL-EYKKFRNFRV 131
             AP W       +C RC   FT T R+HHCR CG+V CG C+    PL +Y   +  RV
Sbjct: 5   DTAPNWADGR---VCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRV 61

Query: 132 CEECYHYLVQ 141
           C+ C+  L +
Sbjct: 62  CDGCFAALQR 71

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 69.2 bits (168), Expect = 2e-15
 Identities = 18/113 (15%), Positives = 44/113 (38%), Gaps = 18/113 (15%)

Query: 208 SGSQHSGWLHKK----------SGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGY- 256
           +G  H G++ +K          S R+W + +   K   +  YK  +  K+   +   G  
Sbjct: 6   AGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEP 65

Query: 257 -------ELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
                   +E  ++    K+V ++K       +  A ++    +W+ +++  +
Sbjct: 66  SYDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQS 118

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (163), Expect = 7e-15
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 212 HSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYE--LEALNEQDN 266
             GWLHK+     R WKR WFVL    ++ YK S +   L S+ +  Y    +       
Sbjct: 11  IRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAPRG 70

Query: 267 FKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
            ++ F  +H G    V  AD  +    W++A+  A+
Sbjct: 71  RRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRAS 106

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 209

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.8 bits (167), Expect = 2e-14
 Identities = 24/141 (17%), Positives = 48/141 (34%), Gaps = 10/141 (7%)

Query: 171 DIIRSNFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGS-QHSGWLHKKS------GRN 223
           D        +  A  R            +   + A D      +G+L K+       G  
Sbjct: 64  DPFAGPADTISLASERYDKDDDGPSDGNQFPPIAAQDLPFVIKAGYLEKRRKDHSFLGFE 123

Query: 224 WKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYEL---EALNEQDNFKYVFQLKHQGQDP 280
           W++ W  L   V Y Y + +D +      + GY++     L +       F++    +  
Sbjct: 124 WQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRI 183

Query: 281 LVFGADNEQSYERWMKAMREA 301
             F A + +  E W++ ++  
Sbjct: 184 YQFTAASPKDAEEWVQQLKFI 204

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (158), Expect = 4e-14
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 212 HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQD-NFK 268
             G+L KK      WK  W VL +  +  YK   D      IP+ G  L +  +      
Sbjct: 7   REGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFGKRM 66

Query: 269 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
           +VF++    Q    F A   +  + W++ + +A
Sbjct: 67  FVFKITTTKQQDHFFQAAFLEERDAWVRDINKA 99

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (159), Expect = 5e-14
 Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 25/122 (20%)

Query: 204 TANDSGSQHSGWLHKKSG-RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN 262
           ++  SG   + WL  +   ++W + W VLK  V+  YK  ++ + + ++ +   E+    
Sbjct: 2   SSGSSGIVMADWLKIRGTLKSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIERP 61

Query: 263 EQDNFKYVFQLKHQGQD-----------------------PLVFGADNEQSYERWMKAMR 299
            + +  + F+L H  +                         L+  A +E     WM A+ 
Sbjct: 62  SKKD-GFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALE 120

Query: 300 EA 301
            A
Sbjct: 121 LA 122

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 8e-14
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 11/110 (10%)

Query: 204 TANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEAL 261
           ++  SG    GWL K+    +NW++ +FVL+ Q +Y YK  ED K    + + G  ++ +
Sbjct: 2   SSGSSGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEI 61

Query: 262 --NEQDNFKYVFQL-------KHQGQDPLVFGADNEQSYERWMKAMREAT 302
             N ++  K+VF++          GQD  V  A ++   E W+K +R   
Sbjct: 62  ATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVA 111

>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: vps27p protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.7 bits (152), Expect = 1e-13
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 78  WIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLE-YKKFRNFRVCEECY 136
           WI       C  C+  F++  R+HHCR+CG V C   S    PL     +   RVC+ C+
Sbjct: 2   WIDSD---ACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCF 58

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]} Length = 109

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.9 bits (154), Expect = 1e-13
 Identities = 42/101 (41%), Positives = 66/101 (65%), Gaps = 2/101 (1%)

Query: 204 TANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEAL 261
           ++  SGS  SG+L++  G  + WK  WFV+K++V+Y Y ASED+ AL S P+LG+ +  +
Sbjct: 2   SSGSSGSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLV 61

Query: 262 NEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
            ++++   VFQL H+G    VF AD+  S +RW+ A +E T
Sbjct: 62  KDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGT 102

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (151), Expect = 2e-13
 Identities = 15/92 (16%), Positives = 35/92 (38%)

Query: 211 QHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYV 270
           + S +L+      WK  W  ++D  ++ Y+     K       L       +   +  Y 
Sbjct: 2   ETSSYLNVLVNSQWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDPSPDHLYS 61

Query: 271 FQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
           F++ H+G++     A + +    W+  +   +
Sbjct: 62  FRILHKGEELAKLEAKSSEEMGHWLGLLLSES 93

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (150), Expect = 5e-13
 Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 208 SGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQD 265
           S    +G+  K+    +NWKR +F L +  +  +K+  + + L  IP+         +Q 
Sbjct: 1   SAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQS 60

Query: 266 NFK---YVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303
           +      +F++    +      AD+ +    W+KA+  A  
Sbjct: 61  DIMMRDNLFEIVTTSRT-FYVQADSPEEMHSWIKAVSGAIV 100

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 9e-05
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 6   PQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKE 47
                 +N F ++  SR+F ++A S  E   WI A+  AI  
Sbjct: 60  SDIMMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVA 101

>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} Length = 51

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Rififylin (FYVE-RING finger protein Sakura)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (143), Expect = 1e-12
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 7/54 (12%)

Query: 87  CQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLV 140
           C+ C + F  T R+  C  C K  C  CS  +           R+C  C  +  
Sbjct: 3   CKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGP-------RLCLLCQRFRA 49

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (146), Expect = 1e-12
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 3/96 (3%)

Query: 208 SGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQD 265
           S     G+L K+ G  + WK  WF L    +  +K     + +  + +        +   
Sbjct: 2   SLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQ 61

Query: 266 NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
                F L    +      A      + W+K +R  
Sbjct: 62  ERVNCFCLVFPFRT-FYLCAKTGVEADEWIKILRWK 96

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 0.001
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query: 1  MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIK 46
            V    +++  N F ++   R+F L A++  E  EWI  ++  + 
Sbjct: 53 SAVQFDYSQERVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKLS 98

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 2e-12
 Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 13/104 (12%)

Query: 212 HSGWLHKKSG--RNWKRYWFVLKDQ---VMYKYKASEDIKALLSIPVLGYELEALNE--- 263
             G+L K+    +NWK   FVL+     + Y   + E+ + +    + G  + AL +   
Sbjct: 13  KQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGV 72

Query: 264 -----QDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
                 +    +F++  +        A ++     W++A+++ T
Sbjct: 73  PTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLT 116

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.5 bits (143), Expect = 7e-12
 Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 24/114 (21%)

Query: 213 SGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYV 270
            GWL K  G  + WKR WF+L D  +Y ++ + D +    IP+    +  + +       
Sbjct: 8   EGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLDPRK-PNC 66

Query: 271 FQLKHQGQDP---------------------LVFGADNEQSYERWMKAMREATT 303
           F+L +                              A + +  E WMK+++ + +
Sbjct: 67  FELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASIS 120

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 8/34 (23%), Positives = 16/34 (47%)

Query: 15  FSVIAISRSFTLRARSANERLEWIDAIQTAIKEN 48
             V      + + A S  E+ EW+ +I+ +I  +
Sbjct: 89  RVVEGNHVVYRISAPSPEEKEEWMKSIKASISRD 122

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 1e-11
 Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 9/100 (9%)

Query: 212 HSGWLHKKSG--RNWKRYWFVLKDQ--VMYKYKASEDIKALLSIPVLGYELEALNEQD-- 265
             G L K+    +NWK   F+L++    ++ Y  +     L +I + G  + ++      
Sbjct: 4   KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 63

Query: 266 ---NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
                + +F++    +      A   +    W+KA++ A+
Sbjct: 64  RKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS 103

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 15  FSVIAISRSFTLRARSANERLEWIDAIQTAIK 46
             + A    + L+A +  ER EWI AIQ A +
Sbjct: 73  EIITADEVHYFLQAATPKERTEWIKAIQMASR 104

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 117

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.3 bits (137), Expect = 3e-11
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 10/110 (9%)

Query: 204 TANDSGSQHSGWLHKKSG--RNWKRYWFVLK--DQVMYKYKASEDIKALLSIPVLGYELE 259
           ++  SG  + G L+KK    + WK  WFVL      +  Y    D +    I +   E  
Sbjct: 2   SSGSSGRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAV 61

Query: 260 ALNEQDNFKY------VFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 303
           A                F      +    F A +  S ++W+  ++   +
Sbjct: 62  APGTPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLS 111

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 117

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.7 bits (81), Expect = 0.001
 Identities = 11/48 (22%), Positives = 19/48 (39%)

Query: 1   MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKEN 48
             +  P+T D    F V    R +   A+      +W+D IQ+ +   
Sbjct: 66  PTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLSSG 113

>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Effector domain of rabphilin-3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.0 bits (137), Expect = 5e-11
 Identities = 11/65 (16%), Positives = 18/65 (27%), Gaps = 1/65 (1%)

Query: 78  WIPDSRVSMCQRCTSVFTVTF-RRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECY 136
            +    V+ C  C     +       C  C K VC  C    +          ++C E  
Sbjct: 42  NVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQR 101

Query: 137 HYLVQ 141
               +
Sbjct: 102 EVWKR 106

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 7e-11
 Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 7/98 (7%)

Query: 210 SQHSGWLHKK-SGRNWKRYWFVLKD---QVMYKYKASEDIKALLSIPVLGYEL--EALNE 263
           S   G L    SG  W   W  +     QV++    S+D +   +IP+   +L      E
Sbjct: 1   SLLCGPLRLSESGETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEE 60

Query: 264 QDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
           + +  +V++L+   +      A + +  ++W++ +  A
Sbjct: 61  RLDSGHVWKLQW-AKQSWYLSASSAELQQQWLETLSTA 97

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 1e-10
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 212 HSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFK 268
            SGWL K S    R +++ W       +  Y   +++ +   IP+       +   + F+
Sbjct: 3   KSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQGDNKFE 62

Query: 269 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
                    Q   VF  + E+    W+  +  A
Sbjct: 63  V-----VTTQRTFVFRVEKEEERNDWISILLNA 90

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.001
 Identities = 12/48 (25%), Positives = 20/48 (41%)

Query: 1  MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKEN 48
          +          +N+F V+   R+F  R     ER +WI  +  A+K  
Sbjct: 47 LSAISTVRVQGDNKFEVVTTQRTFVFRVEKEEERNDWISILLNALKSQ 94

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.2 bits (134), Expect = 1e-10
 Identities = 15/108 (13%), Positives = 42/108 (38%), Gaps = 12/108 (11%)

Query: 207 DSGSQHSGWLHKKSG---RNWKRYWFVLKDQ--VMYKYKASEDIKALLSIPVLGYELEAL 261
           D  ++  G+L  +       + R +F+L  Q   +  Y  +    A+ +  V   +L  +
Sbjct: 12  DRQNRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYI 71

Query: 262 NEQD-------NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
           ++                + +         A++++  + W++A+ +A+
Sbjct: 72  SKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQAS 119

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 1e-10
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 9/99 (9%)

Query: 212 HSGWLHKKS------GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQD 265
             G+L KKS      G  W++ W V+   + Y Y   +  +   +  + GY +       
Sbjct: 3   KQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPHLR 62

Query: 266 NFK---YVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
                   F+L  Q +    F A +      W+  +   
Sbjct: 63  RDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFL 101

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.001
 Identities = 8/47 (17%), Positives = 17/47 (36%)

Query: 1   MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKE 47
                  ++  +         R++   A S  E  +W+D I   +K+
Sbjct: 58  APHLRRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFLLKD 104

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.4 bits (132), Expect = 2e-10
 Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 9/99 (9%)

Query: 212 HSGWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE-- 263
            +G+L K+          W++ W  L   V Y Y + +D +      + GY++   N   
Sbjct: 11  KAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLR 70

Query: 264 -QDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
                   F++    +    F A + +  E W++ ++  
Sbjct: 71  KDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFI 109

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 2e-10
 Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 12/103 (11%)

Query: 212 HSGWLHKKSG----RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF 267
             GWL   +        K YWFVL  + +  YK  E+ +    + V   +L  + +    
Sbjct: 5   RKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMS 64

Query: 268 K--------YVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
                       +  ++    L    + ++  + W  +   A 
Sbjct: 65  SKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAG 107

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 3e-10
 Identities = 12/102 (11%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 206 NDSGSQHSGWLHKKS-----GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEA 260
           N + ++ +G+L+ ++        W R ++  +   +      +     L++ +    + A
Sbjct: 1   NRNLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARGDVA-GGLAMDIDNCSVMA 59

Query: 261 LNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
           ++ +D           G+   +  A++++ +E W+  +   +
Sbjct: 60  VDCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNIS 101

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.2 bits (132), Expect = 3e-10
 Identities = 13/110 (11%), Positives = 28/110 (25%), Gaps = 19/110 (17%)

Query: 211 QHSGWLHKKSG----------RNWKRYWFVLKDQVM------YKYKASEDIKALLSIPVL 254
           Q  G L                 W++   +L+  V         +   +  +  +SIP+ 
Sbjct: 19  QREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSIPLS 78

Query: 255 GYELEALNEQDNF---KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
                              F LK +     +    +      W+  ++  
Sbjct: 79  AIIEVRTTMPLEMPEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGC 128

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 5e-10
 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 16/115 (13%)

Query: 204 TANDSGSQHSGWLHKK----------SGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPV 253
           ++  SG Q  G L +K          + R+W+  + VL+   +  YK ++   A +    
Sbjct: 2   SSGSSGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHG 61

Query: 254 LGY------ELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
                    +     +    K+VF+L  Q     +F A +E     W++ +  A 
Sbjct: 62  EVPVSLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAI 116

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (130), Expect = 5e-10
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 13/108 (12%)

Query: 208 SGSQHSGWLHKKSG--------RNWKRYWFVLKD-----QVMYKYKASEDIKALLSIPVL 254
            G    GWL+K +         R++KR +F L         +  YK  +  K       L
Sbjct: 16  GGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFL 75

Query: 255 GYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
              +  +      ++ F+LK Q +   +  AD+E   E W+  + +  
Sbjct: 76  DSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKIL 123

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 1e-09
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 9/111 (8%)

Query: 204 TANDSGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASED------IKALLSIPVL 254
           ++  SG +HSG+L        + WK+ +FVL     Y +            + LL +   
Sbjct: 2   SSGSSGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGY 61

Query: 255 GYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 305
             +             F    +  D ++F +D+EQ    W++AM  AT  S
Sbjct: 62  TVDYTDPQPGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATGQS 112

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 2e-09
 Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 2/96 (2%)

Query: 212 HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKY 269
             G+L  K    R ++ YW  L+   ++ Y   + I  +  + ++               
Sbjct: 13  FEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNSTEKNC 72

Query: 270 VFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 305
                   ++ +    +N +S E W   +   T LS
Sbjct: 73  AKFTLVLPKEEVQLKTENTESGEEWRGFILTVTELS 108

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 5e-09
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 17/112 (15%)

Query: 210 SQHSGWLHKKSG------------RNWKRYWFVLKDQVMYKYKA----SEDIKALLSIPV 253
           +   GWLH +              R WK+ + VL+   +Y YK     +   +    I V
Sbjct: 1   AAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISV 60

Query: 254 LGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 305
               ++    +   K VF+L     +  +F A++      W+K ++E++ L+
Sbjct: 61  NACLIDISYSETKRKNVFRLTTSDCE-CLFQAEDRDDMLAWIKTIQESSNLN 111

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 101

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.6 bits (117), Expect = 2e-08
 Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 213 SGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFK-- 268
           +G L+ +      W  ++FVL    +Y  + +        + V   ++    E  N +  
Sbjct: 4   NGILYLEDPVNHEWYPHYFVLTSSKIYYSEETSSDLLRGVLDVPACQIAIRPEGKNNRLF 63

Query: 269 -YVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
            +   +    Q  L   AD+++  + W+K +RE  
Sbjct: 64  VFSISMPSVAQWSLDVAADSQEELQDWVKKIREVA 98

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

 Score = 49.7 bits (117), Expect = 2e-08
 Identities = 21/104 (20%), Positives = 46/104 (44%), Gaps = 16/104 (15%)

Query: 214 GWLHKK----------SGRNWKRYWFVLKDQVMYKYKASED------IKALLSIPVLGYE 257
           G+L++K          S R+W   + V+ +Q M  YK ++         + + + +    
Sbjct: 3   GFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAI 62

Query: 258 LEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
            E   +    K+VF+L+    +  +F A +++    W++A+  A
Sbjct: 63  CEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 4e-08
 Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 9/99 (9%)

Query: 212 HSGWLHKKSG--RNWKRYWFVLKDQV-MYKYKASEDIKALLSIPVLGYE------LEALN 262
             GWLHK+    + W+  +F+LK+      YK           P+  +       ++   
Sbjct: 9   KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 68

Query: 263 EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
            + N   +  L+        F  +  +  E W  A++  
Sbjct: 69  PRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTV 107

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]} Length = 119

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.1 bits (113), Expect = 7e-08
 Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 6/104 (5%)

Query: 202 EVTANDSGSQHSGWLHKKSGRN---WKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYEL 258
           E  A        G++ K        W+R +F L    +      E  +   S+  +    
Sbjct: 2   EDYALGKDCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGEGEAPQ---SLLTMEEIQ 58

Query: 259 EALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 302
                Q   +    LK +G    V   D++    +W K +R+A 
Sbjct: 59  SVEETQIKERKCLLLKIRGGKQFVLQCDSDPELVQWKKELRDAY 102

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 2e-07
 Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 38/131 (29%)

Query: 208 SGSQHSGWLHKKS-------GRNWKRYWFVLKDQVMYKYKASED----IKALLSIPVLGY 256
           +         K+S         N+K+  F+L    +  Y+   +         SI V   
Sbjct: 1   AAVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKI 60

Query: 257 --------------------------ELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQS 290
                                     E+E ++  + F Y FQ+ +    PL   +  E+ 
Sbjct: 61  TCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEG-PLYVFSPTEEL 119

Query: 291 YERWMKAMREA 301
            +RW+  ++  
Sbjct: 120 RKRWIHQLKNV 130

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 3e-05
 Identities = 8/51 (15%), Positives = 19/51 (37%)

Query: 5   LPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSF 55
           +   E +   F V+       + + +   R  WI  ++  I+ N   +  +
Sbjct: 91  ISIIERFPYPFQVVYDEGPLYVFSPTEELRKRWIHQLKNVIRYNSDLVQKY 141

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 4e-07
 Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 15/101 (14%)

Query: 212 HSGWLHKKSGRNWKRYWFVLKDQVM------------YKYKASEDIKALLSIPVLGYELE 259
             G+L K   ++  + +FVL+                 K    +      SIP+      
Sbjct: 4   KVGYLRKP--KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNI 61

Query: 260 ALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMRE 300
                   K++    +   +     AD+E   + W +A+ +
Sbjct: 62  NKRADSKNKHLVA-LYTRDEHFAIAADSEAEQDSWYQALLQ 101

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 5e-07
 Identities = 12/97 (12%), Positives = 29/97 (29%), Gaps = 6/97 (6%)

Query: 205 ANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ 264
             ++     G + K+ G   +R   +L +     Y    +      IP       +   +
Sbjct: 43  VENNLILKMGPVDKRKGLFARRRQLLLTEGPHLYYVDPVNKVLKGEIPW------SQELR 96

Query: 265 DNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
              K          +   +  D   +  +W + ++E 
Sbjct: 97  PEAKNFKTFFVHTPNRTYYLMDPSGNAHKWCRKIQEV 133

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 7e-06
 Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 18/107 (16%)

Query: 213 SGWLHKKSGRN--WKRYWFVLKDQVMYKYKASEDIKALLSIPV------LGYELEALNEQ 264
            GW+   S ++   KR+++ L  + +  ++ +   +    IP+         +  +L   
Sbjct: 4   EGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTNRYYKEIPLSEILTVESAQNFSLVPP 63

Query: 265 DNFKYVFQLKH----------QGQDPLVFGADNEQSYERWMKAMREA 301
               + F++             G  P        ++   W  A+R+A
Sbjct: 64  GTNPHCFEIVTANATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQA 110

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 109

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 1e-04
 Identities = 6/43 (13%), Positives = 18/43 (41%)

Query: 5   LPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKE 47
           +       + F ++    S   +A +A  + EW++ ++   + 
Sbjct: 62  VKDNPPMKDMFKLLMFPESRIFQAENAKIKREWLEVLEETKRA 104

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 109

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 4e-04
 Identities = 13/97 (13%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 212 HSGWLHKKSGRNWK----RYWFVLKDQVMYKYKASEDIKALL---SIPVLGYELEALNEQ 264
           ++G L +    +       + F++ D ++      +           P+    +  + + 
Sbjct: 6   YNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVKDN 65

Query: 265 DNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 301
              K +F+L     +  +F A+N +    W++ + E 
Sbjct: 66  PPMKDMFKLLMF-PESRIFQAENAKIKREWLEVLEET 101

>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]} Length = 147

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 11/64 (17%), Positives = 23/64 (35%)

Query: 1   MKVCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQHLLSFLNRRS 60
                 + +    E    A    + ++A +   +  W++AI+  +    Q        R+
Sbjct: 83  GITENVKGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTSQLQACREASQHRA 142

Query: 61  LTQS 64
           L QS
Sbjct: 143 LEQS 146

>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (82), Expect = 0.002
 Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 13/105 (12%)

Query: 212 HSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF---- 267
             G L +   +        L D +M   K++     L       Y L+            
Sbjct: 29  MEGTLTRVGAK--HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQIND 86

Query: 268 -------KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 305
                  K+ F++  + ++ ++F A + +    WM A+      S
Sbjct: 87  KDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYRS 131

>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]} Length = 140

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 8/50 (16%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 2   KVCLPQTEDYNNEFSVIAIS-----RSFTLRARSANERLEWIDAIQTAIK 46
            V +         F +I  S     + + L A +++++  W++ ++ A++
Sbjct: 89  AVLIRSVATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVR 138

>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]} Length = 142

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 13  NEFSVIAISRSFTLRARSANERLEWIDAIQTAIKE 47
             F +  I R +TLRA S NER  W+  I+ A + 
Sbjct: 99  PIFHISHIDRVYTLRAESINERTAWVQKIKAASEL 133

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	305
d1joca1	64	Eea1 {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	99.82
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	99.82
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	99.81
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	99.79
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	99.79
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	99.78
d1dvpa2	72	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	99.77
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.77
d2cofa1	95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	99.77
d2coaa1	112	Protein kinase c, d2 type {Human (Homo sapiens) [T	99.76
d1x1fa1	136	Signal-transducing adaptor protein 1, STAP-1 {Huma	99.76
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	99.74
d1u5ea1	209	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.73
d1fgya_	127	Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	99.73
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	99.73
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	99.72
d1vfya_	67	vps27p protein {Baker's yeast (Saccharomyces cerev	99.72
d2j59m1	133	Rho GTPase-activating protein 21 {Human (Homo sapi	99.71
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	99.71
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	99.7
d1wi1a_	126	Calcium-dependent activator protein for secretion,	99.7
d1wfka_	88	Zinc finger FYVE domain containing protein 19 {Mou	99.7
d1v5ua_	117	SET binding factor 1, Sbf1 {Mouse (Mus musculus) [	99.7
d1omwa2	119	G-protein coupled receptor kinase 2 (beta-adrenerg	99.69
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	99.69
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	99.69
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.67
d1x1ga1	116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.67
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	99.67
d1v5pa_	126	Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	99.66
d1v5ma_	136	SH2 and PH domain-containing adapter protein APS {	99.65
d1droa_	122	beta-spectrin {Fruit fly (Drosophila melanogaster)	99.65
d1unqa_	118	Rac-alpha serine/threonine kinase {Human (Homo sap	99.64
d1w1ha_	147	3-phosphoinositide dependent protein kinase-1 {Hum	99.6
d1y02a2	51	Rififylin (FYVE-RING finger protein Sakura) {Human	99.45
d1zbdb_	124	Effector domain of rabphilin-3a {Rat (Rattus norve	99.21
d1v61a_	132	Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [	99.04
d1zc3b1	109	Exocyst complex protein EXO84 {Rat (Rattus norvegi	98.62
d2dfka2	162	Rho guanine nucleotide exchange factor 9, Collybis	98.56
d1zc3b1	109	Exocyst complex protein EXO84 {Rat (Rattus norvegi	98.51
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	98.47
d1dbha2	133	Son of sevenless-1 (sos-1) {Human (Homo sapiens) [	98.46
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	98.28
d1maia_	119	Phospholipase C delta-1 {Rat (Rattus norvegicus) [	98.28
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	98.15
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	98.04
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	97.96
d1v61a_	132	Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [	97.94
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	97.94
d2cofa1	95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	97.93
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	97.92
d1xcga2	140	Rho guanine nucleotide exchange factor 11, PDZ-Rho	97.91
d2j59m1	133	Rho GTPase-activating protein 21 {Human (Homo sapi	97.89
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	97.87
d1ki1b2	142	GEF of intersectin {Human (Homo sapiens) [TaxId: 9	97.87
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	97.83
d1v5ma_	136	SH2 and PH domain-containing adapter protein APS {	97.83
d1x1fa1	136	Signal-transducing adaptor protein 1, STAP-1 {Huma	97.83
d1wi1a_	126	Calcium-dependent activator protein for secretion,	97.8
d1v5pa_	126	Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	97.77
d1dbha2	133	Son of sevenless-1 (sos-1) {Human (Homo sapiens) [	97.77
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	97.75
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	97.74
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	97.71
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	97.69
d1ki1b2	142	GEF of intersectin {Human (Homo sapiens) [TaxId: 9	97.65
d1omwa2	119	G-protein coupled receptor kinase 2 (beta-adrenerg	97.61
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	97.6
d1xcga2	140	Rho guanine nucleotide exchange factor 11, PDZ-Rho	97.58
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	97.57
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	97.56
d1v5ua_	117	SET binding factor 1, Sbf1 {Mouse (Mus musculus) [	97.56
d1unqa_	118	Rac-alpha serine/threonine kinase {Human (Homo sap	97.53
d1txda2	114	Rho guanine nucleotide exchange factor 12 {Human (	97.52
d1ntya2	121	Triple functional domain protein TRIO {Human (Homo	97.5
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	97.49
d2dfka2	162	Rho guanine nucleotide exchange factor 9, Collybis	97.46
d1ntya2	121	Triple functional domain protein TRIO {Human (Homo	97.44
d1w1ha_	147	3-phosphoinositide dependent protein kinase-1 {Hum	97.44
d1droa_	122	beta-spectrin {Fruit fly (Drosophila melanogaster)	97.42
d1kz7a2	147	Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId	97.39
d2coaa1	112	Protein kinase c, d2 type {Human (Homo sapiens) [T	97.38
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	97.33
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	97.23
d1x1ga1	116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	97.21
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	97.19
d1txda2	114	Rho guanine nucleotide exchange factor 12 {Human (	97.17
d1fhoa_	119	UNC-89 {Nematode (Caenorhabditis elegans) [TaxId:	97.12
d2adza1	105	Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 1	97.05
d1fgya_	127	Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	96.89
d1kz7a2	147	Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId	96.8
d1maia_	119	Phospholipase C delta-1 {Rat (Rattus norvegicus) [	95.75
d1dcqa2	122	Pyk2-associated protein beta ARF-GAP domain {Mouse	95.32
d1fhoa_	119	UNC-89 {Nematode (Caenorhabditis elegans) [TaxId:	94.96
d1foea2	162	GEF of TIAM1 (T-Lymphoma invasion and metastasis i	92.72
d1wfla_	74	Zinc finger A20 domain containing protein 2 {Mouse	91.39
d1wffa_	85	ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus	89.3
d2zkmx3	131	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	88.38
d1wfpa_	74	Zinc finger A20 and AN1 domains containing protein	87.64
d2adza1	105	Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 1	86.71
d1wfha_	64	Zinc finger A20 and AN1 domains containing protein	85.82

>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Eea1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.1e-21  Score=132.29  Aligned_cols=63  Identities=40%  Similarity=0.867  Sum_probs=58.8

Q ss_pred             eeeecCCCcccccccccccccccccccccccceeccCccCCeecccCCCCccccccHhhHHHHH
Q psy2207          77 LWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLV  140 (305)
Q Consensus        77 ~w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~  140 (305)
                      .|+||++++.|+.|+.+|+++.||||||+||.+||+.|+.++.++|.. ..++|||+.||..|.
T Consensus         1 rW~~d~~~~~C~~C~~~F~~~~rrHHCR~CG~v~C~~Cs~~~~~~~~~-~~~~RVC~~C~~~l~   63 (64)
T d1joca1           1 KWAEDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNALTPSS-KKPVRVCDACFNDLQ   63 (64)
T ss_dssp             CCCCGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEECCTTC-SSCEEECHHHHHHTT
T ss_pred             CCCCcccCCcCcCcCCcccCCccccchhhhCCeecccccCCceecCCC-CCccEehHHHHHHhc
Confidence            499999999999999999999999999999999999999999999864 578999999999875

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=1.2e-19  Score=136.29  Aligned_cols=98  Identities=42%  Similarity=0.771  Sum_probs=88.8

Q ss_pred             CCCCceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEE
Q psy2207         207 DSGSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFG  284 (305)
Q Consensus       207 ~~~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~  284 (305)
                      .++++++|||++++  .+.|++|||+|+++.|+||+++.+..+...|+|.++.+....+...++++|.|.+++.+.|+|+
T Consensus         5 ~~~~~~~G~L~k~~~~~~~W~kr~~vL~~~~L~~~k~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~F~i~~~~~~~~~f~   84 (109)
T d1wgqa_           5 SSGSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVFK   84 (109)
T ss_dssp             CCSCSCEEEEEEESSTTSCCEEEEEEEETTEEEEESCTTCSSCSEEEECSSEEEEECCCSSCSSSEEEEEETTEEEEEEE
T ss_pred             CCCCcEEEEEEEECCCCCCceEEEEEEeCCEEEEeccccccccccccccceeeeeecccccccceeeeeecccceEEEEE
Confidence            34568999999998  6789999999999999999999999999999999998887776677889999999888899999


Q ss_pred             cCCHHHHHHHHHHHHHHHcC
Q psy2207         285 ADNEQSYERWMKAMREATTL  304 (305)
Q Consensus       285 a~s~e~~~~Wi~al~~a~~~  304 (305)
                      |++++++++||.+|+.|+.-
T Consensus        85 a~s~~~~~~Wi~ai~~a~~~  104 (109)
T d1wgqa_          85 ADDAHSTQRWIDAFQEGTVS  104 (109)
T ss_dssp             CSSHHHHHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHHHHhcc
Confidence            99999999999999999753

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1e-19  Score=134.78  Aligned_cols=92  Identities=16%  Similarity=0.308  Sum_probs=81.3

Q ss_pred             ceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCCH
Q psy2207         211 QHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNE  288 (305)
Q Consensus       211 ~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s~  288 (305)
                      ..+|||++++  .+.|++|||||.++.|+||+++.+..|.+.|+|.++.+........++++|+|.+++ ++|+|+|+|+
T Consensus         5 ~KeG~L~K~~~~~k~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~~~~~~F~i~~~~-r~~~l~a~s~   83 (100)
T d1faoa_           5 TKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNCFCLVFPF-RTFYLCAKTG   83 (100)
T ss_dssp             CEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTCSSCSEEEEGGGCCEEEEECSSSSSSEEEEEETT-EEEEEECSSH
T ss_pred             cEEEEEEEeCCCCCCceEEEEEEECCEEEEEeccCCccCceEEechheEEEEeccccccccccccccCC-eEEEEEeCCH
Confidence            6899999998  678999999999999999999999999999999998766544445678999999765 6799999999


Q ss_pred             HHHHHHHHHHHHHHc
Q psy2207         289 QSYERWMKAMREATT  303 (305)
Q Consensus       289 e~~~~Wi~al~~a~~  303 (305)
                      +++++|+.||+.++.
T Consensus        84 ~~~~~Wi~ai~~~i~   98 (100)
T d1faoa_          84 VEADEWIKILRWKLS   98 (100)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999998763

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.9e-20  Score=135.37  Aligned_cols=92  Identities=17%  Similarity=0.320  Sum_probs=80.2

Q ss_pred             ceeeeeeecc-CCCceEEEEEEECC---EEEEEccCccCccceEEEecCeEEEEccc--cCCcceeEEEEeCCceeEEEE
Q psy2207         211 QHSGWLHKKS-GRNWKRYWFVLKDQ---VMYKYKASEDIKALLSIPVLGYELEALNE--QDNFKYVFQLKHQGQDPLVFG  284 (305)
Q Consensus       211 ~~~G~L~~~~-~~~wkrrw~vL~~~---~L~~y~~~~d~~p~~~i~L~~~~v~~~~~--~~~~~~~F~l~~~~~~~~~f~  284 (305)
                      +++|||+++. .+.|++|||||+++   .||||+++.+..|.+.|+|.++.+.....  ....+++|+|.+++ ++|+|+
T Consensus         2 ~~~G~L~~~~~~k~W~krwfvL~~~~~~~ly~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~F~i~~~~-r~~~l~   80 (99)
T d2coca1           2 LLCGPLRLSESGETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAK-QSWYLS   80 (99)
T ss_dssp             SSEEEEEEESSSSCEEEEEEECCTTCTTCEEEECCTTCSSSCSEECGGGCEEECCCSSSCCSSSEEEEEEETT-EEEEEE
T ss_pred             ceEEEEEccCCCCCccEEEEEEecCCccEEEEECcCccccccccccccceeeeecccccccCCceEEEEEcCC-cEEEEE
Confidence            6899999998 78999999999865   69999999999999999999998875433  24567999998655 679999


Q ss_pred             cCCHHHHHHHHHHHHHHHc
Q psy2207         285 ADNEQSYERWMKAMREATT  303 (305)
Q Consensus       285 a~s~e~~~~Wi~al~~a~~  303 (305)
                      |+|++++++||+||+.|+.
T Consensus        81 A~s~~e~~~Wi~aL~~Aa~   99 (99)
T d2coca1          81 ASSAELQQQWLETLSTAAH   99 (99)
T ss_dssp             ESSHHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHhcC
Confidence            9999999999999999974

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=4.3e-19  Score=131.42  Aligned_cols=95  Identities=21%  Similarity=0.349  Sum_probs=83.6

Q ss_pred             ceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccc-cCCcceeEEEEeC--CceeEEEEc
Q psy2207         211 QHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE-QDNFKYVFQLKHQ--GQDPLVFGA  285 (305)
Q Consensus       211 ~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~-~~~~~~~F~l~~~--~~~~~~f~a  285 (305)
                      +.+|||++++  .+.|++|||+|.++.|+||+++.+..|.+.|+|.++.|...+. ..+++|+|.|...  +.+.|+|+|
T Consensus         2 iK~G~L~k~~~~~k~W~kR~fvL~~~~L~yy~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~f~i~~~~~~~~~~~~~a   81 (101)
T d2fjla1           2 IKNGILYLEDPVNHEWYPHYFVLTSSKIYYSEETSSDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAA   81 (101)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEETTEEEECCCCSCTCCCEEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEEEEE
T ss_pred             ceEEEEEEEcCCCCCCeEEEEEEECCEEEEEeccccceecceEEcCCceeEeeeeecccccceeEEeccccccEEEEEEe
Confidence            5789999998  7789999999999999999999999999999999999886543 3456799999864  346799999


Q ss_pred             CCHHHHHHHHHHHHHHHcCC
Q psy2207         286 DNEQSYERWMKAMREATTLS  305 (305)
Q Consensus       286 ~s~e~~~~Wi~al~~a~~~s  305 (305)
                      +|++++.+||.||++|+.-|
T Consensus        82 ~s~~e~~~Wi~ai~~~~~~a  101 (101)
T d2fjla1          82 DSQEELQDWVKKIREVAQTA  101 (101)
T ss_dssp             SSHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHhcC
Confidence            99999999999999998754

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=7.3e-19  Score=131.12  Aligned_cols=94  Identities=30%  Similarity=0.620  Sum_probs=83.8

Q ss_pred             Cceeeeeeecc---CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEcc--ccCCcceeEEEEeCCceeEEEE
Q psy2207         210 SQHSGWLHKKS---GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN--EQDNFKYVFQLKHQGQDPLVFG  284 (305)
Q Consensus       210 ~~~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~--~~~~~~~~F~l~~~~~~~~~f~  284 (305)
                      ++++|||++++   .+.|++|||||.++.|+||.++.+..|.+.|+|.++.|....  ...+.+|.|.|.+.+.+.|+|+
T Consensus         9 ~~~~G~L~k~~~~~~k~W~kr~~vL~~~~L~~y~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~   88 (107)
T d1upqa_           9 VHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLA   88 (107)
T ss_dssp             EEEEEEEEEECSSSSCCEEEEEEEEETTEEEEESSTTCCSCCEEEEGGGCEEEECCSSCTTSSSSEEEEECTTSCCEEEE
T ss_pred             eeEEEEEEEeCCCCCCCeeEEEEEEECCEEEEecCcccccccceecccceEEEEeccCcccCcceEEEEEcCCCeEEEEE
Confidence            47999999986   568999999999999999999999999999999999888543  3345668999998888899999


Q ss_pred             cCCHHHHHHHHHHHHHHHc
Q psy2207         285 ADNEQSYERWMKAMREATT  303 (305)
Q Consensus       285 a~s~e~~~~Wi~al~~a~~  303 (305)
                      |+|++++++|++||+.|++
T Consensus        89 a~s~~e~~~Wi~al~~A~~  107 (107)
T d1upqa_          89 ADTLEDLRGWLRALGRASR  107 (107)
T ss_dssp             CSSHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHhC
Confidence            9999999999999999985

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.4e-19  Score=132.89  Aligned_cols=94  Identities=21%  Similarity=0.383  Sum_probs=81.3

Q ss_pred             Cceeeeeeecc----CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEcc-ccCCcceeEEEEeC-------C
Q psy2207         210 SQHSGWLHKKS----GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN-EQDNFKYVFQLKHQ-------G  277 (305)
Q Consensus       210 ~~~~G~L~~~~----~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~-~~~~~~~~F~l~~~-------~  277 (305)
                      ++..|||++++    .+.|++|||||.++.|+||+++++..|.+.|+|.++.|...+ ...+++++|+|..+       +
T Consensus         3 vik~GwL~k~~~~~~~~~WkkRwFvL~~~~L~yyk~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~F~l~~~~~~~~~~~   82 (111)
T d2dyna_           3 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKD   82 (111)
T ss_dssp             EEEEEEEEETTCCTTTTSSEEEEEEEESSEEEEESSTTCCCEEEEEECTTEEEEEECCCSTTCSEEEEEEESSCSCSBTT
T ss_pred             EEEEeeEEEECCCCCcCCceEEEEEEECCEEEEEcchhhcccccccccccceeEeeccccccccccEEeeeccccccccC
Confidence            46899999986    457999999999999999999999999999999998887543 33467899999854       3


Q ss_pred             ceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         278 QDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       278 ~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      .++|+|+|+|++++.+|++||.+|+.
T Consensus        83 ~r~~~l~a~s~ed~~~W~~al~~A~~  108 (111)
T d2dyna_          83 YRQLELACETQEEVDSWKASFLRAGV  108 (111)
T ss_dssp             BSSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred             ceeEEEECCCHHHHHHHHHHHHHhcc
Confidence            46899999999999999999999875

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=7.2e-19  Score=136.05  Aligned_cols=95  Identities=24%  Similarity=0.410  Sum_probs=80.6

Q ss_pred             CCCceeeeeeecc-CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCC---------
Q psy2207         208 SGSQHSGWLHKKS-GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQG---------  277 (305)
Q Consensus       208 ~~~~~~G~L~~~~-~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~---------  277 (305)
                      ..++++|||.+++ .+.|++|||||+++.|+||+++.+..|.+.|+|.++.|...+. ...+++|+|.+..         
T Consensus         6 ~~~~~~GwLkk~~~~k~WkkRwfvL~~~~L~yyk~~~~~~~~g~i~L~~~~v~~~~~-~~~~~~f~i~~~~~~~~~~~~~   84 (130)
T d1v88a_           6 SGIVMADWLKIRGTLKSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIERPS-KKDGFCFKLFHPLEQSIWAVKG   84 (130)
T ss_dssp             SSCCEEEEEEECCSSSSCEEEEEEEETTEEEEESCSSSCCCCEEEECSSCEECCCCT-TTSSCEEEEECTTCCCCSCSSC
T ss_pred             CCCeEeCeEEeCCCCCCceEEEEEEeCCEEEEEcCCCCCcceeEEECCCeEEEEccc-cCCCceEEEEcCCCcceecccC
Confidence            4568999998777 7889999999999999999999999999999999998876544 3456899986532         


Q ss_pred             --------------ceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         278 --------------QDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       278 --------------~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                                    .+.|+|+|+|++++++||+||+.|+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~l~A~s~~e~~~Wi~al~~~i~  124 (130)
T d1v88a_          85 PKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALK  124 (130)
T ss_dssp             TTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHT
T ss_pred             cccccceeEEecCCcEEEEEECCCHHHHHHHHHHHHHHhh
Confidence                          23478999999999999999999875

>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=6e-20  Score=126.53  Aligned_cols=66  Identities=41%  Similarity=0.944  Sum_probs=59.1

Q ss_pred             CCCCeeeecCCCcccccccccccccccccccccccceeccCccCCeecccCCC-CccccccHhhHHHHHh
Q psy2207          73 KVAPLWIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKK-FRNFRVCEECYHYLVQ  141 (305)
Q Consensus        73 ~~~p~w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~-~~~~rvC~~C~~~~~~  141 (305)
                      ..+|.|++++   .|+.|+.+|++++||||||+||.+||..|+.++++||..+ .+++|||+.||..|..
T Consensus         5 ~~~p~W~~~~---~C~~C~~~F~~~~rrhhCr~CG~~~C~~C~~~~~~lp~~~~~~p~RVC~~C~~~l~~   71 (72)
T d1dvpa2           5 DTAPNWADGR---VCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAALQR   71 (72)
T ss_dssp             SCCCCCCCCS---BCTTTCCBCCSSSCCEECTTTCCEECSTTSCEEEEEGGGTEEEEEEECHHHHHHHHH
T ss_pred             CCCCCCCcCC---ccccCCCcccCccccccccccCCeeChhhhCCceECcccCCCCCCEeCHHHHHHHHC
Confidence            5689999764   6999999999999999999999999999999999998654 6789999999998863

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3e-18  Score=129.30  Aligned_cols=96  Identities=24%  Similarity=0.392  Sum_probs=85.0

Q ss_pred             CCCceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEcc-ccCCcceeEEEEeCCceeEEEE
Q psy2207         208 SGSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN-EQDNFKYVFQLKHQGQDPLVFG  284 (305)
Q Consensus       208 ~~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~-~~~~~~~~F~l~~~~~~~~~f~  284 (305)
                      +.++++|||++++  .+.|++|||||.++.|+||+++.+..|.+.|+|.++.+.... ....+++.|.|...+.+.|+|+
T Consensus         3 ~~~ikeG~L~k~~~~~k~WkkryfvL~~~~L~~y~~~~~~~p~~~i~l~~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~   82 (113)
T d1plsa_           3 PKRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQQDHFFQ   82 (113)
T ss_dssp             CCCSEEEEEEEESSSSSCCEEEEEEEETTEEEEESSTTCSSCSEEEESSSCCEESSCCSSCCSSSEEEEEETTTEEEEEE
T ss_pred             CCceEEEEEEEeCCCCCCceEEEEEEECCEEEEEecCCccccceEEECccCeEEeeecccCCcceEEEEecCCCeEEEEE
Confidence            3468999999987  789999999999999999999999999999999998776443 3356678999999888899999


Q ss_pred             cCCHHHHHHHHHHHHHHHc
Q psy2207         285 ADNEQSYERWMKAMREATT  303 (305)
Q Consensus       285 a~s~e~~~~Wi~al~~a~~  303 (305)
                      |+|++++++|+.+|+.|+.
T Consensus        83 a~s~~e~~~Wi~ai~~ai~  101 (113)
T d1plsa_          83 AAFLEERDAWVRDINKAIK  101 (113)
T ss_dssp             CSSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            9999999999999998865

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=3.5e-18  Score=128.49  Aligned_cols=96  Identities=20%  Similarity=0.430  Sum_probs=83.1

Q ss_pred             CCCceeeeeeecc------CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccc---cCCcceeEEEEeCCc
Q psy2207         208 SGSQHSGWLHKKS------GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE---QDNFKYVFQLKHQGQ  278 (305)
Q Consensus       208 ~~~~~~G~L~~~~------~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~---~~~~~~~F~l~~~~~  278 (305)
                      +.++++|||++++      .+.|++|||||.++.|+||+++.+..|.+.|+|.++.+.....   ....+++|.|..++.
T Consensus         7 ~~v~k~G~L~k~~~~~~~~~~~W~~r~~vL~~~~L~~y~~~~~~~p~g~i~L~~~~~~~~~~~~~~~~~~~~f~i~~~~~   86 (111)
T d1u5fa1           7 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDK   86 (111)
T ss_dssp             SSEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECTTSCSSTTGGGEEEEECTTS
T ss_pred             CCeeEEEEEEEECCCCCCCcCCceEEEEEEECCEEEeeccccccCcceEEEecccEEEeeccccccccccceEEEEccCC
Confidence            3468999999986      3479999999999999999999999999999999988775432   245679999998888


Q ss_pred             eeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         279 DPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       279 ~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      +.|+|+|+|++++++|++||+.+++
T Consensus        87 ~~~~~~a~s~~e~~~W~~ai~~~i~  111 (111)
T d1u5fa1          87 RIYQFTAASPKDAEEWVQQLKFILQ  111 (111)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred             cEEEEEcCCHHHHHHHHHHHHHHhC
Confidence            8999999999999999999998753

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=7.8e-19  Score=128.56  Aligned_cols=90  Identities=18%  Similarity=0.409  Sum_probs=79.7

Q ss_pred             eeeeeeeccCCCceEEEEEEECCEEEEEccCcc-CccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCCHHH
Q psy2207         212 HSGWLHKKSGRNWKRYWFVLKDQVMYKYKASED-IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQS  290 (305)
Q Consensus       212 ~~G~L~~~~~~~wkrrw~vL~~~~L~~y~~~~d-~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s~e~  290 (305)
                      .+|||.+.+.+.|++|||+|+++.|+||+++.+ ..|.+.|+|.++.|...+. ...+++|.|.+++.++|+|+|+|+++
T Consensus         3 ~s~yl~~~~~~~WkkR~fvL~~~~L~yyk~~~~~~~~~~~i~l~~~~v~~~~~-~~~~~~f~~~~~~~~~~~l~A~s~~e   81 (95)
T d2cofa1           3 TSSYLNVLVNSQWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDPS-PDHLYSFRILHKGEELAKLEAKSSEE   81 (95)
T ss_dssp             TCCEEEEEETTEEEEEEEEECSSCEEEECSSTTCSEEEEEECTTTCEEECCCB-TTBSCEEEEEETTEEEEEEECSSHHH
T ss_pred             cccchhhhcCCCceEEEEEEECCEEEEEecccccccccccccccceEEEeccc-ccceecceeccccceeEEeeCCCHHH
Confidence            689999988788999999999999999998754 4688999999998876544 46679999999988999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy2207         291 YERWMKAMREAT  302 (305)
Q Consensus       291 ~~~Wi~al~~a~  302 (305)
                      +++||.+|+.|+
T Consensus        82 ~~~Wi~~L~~~t   93 (95)
T d2cofa1          82 MGHWLGLLLSES   93 (95)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHh
Confidence            999999999886

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.7e-18  Score=129.08  Aligned_cols=93  Identities=20%  Similarity=0.431  Sum_probs=81.3

Q ss_pred             ceeeeeeecc------CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEcccc---CCcceeEEEEeCCceeE
Q psy2207         211 QHSGWLHKKS------GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ---DNFKYVFQLKHQGQDPL  281 (305)
Q Consensus       211 ~~~G~L~~~~------~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~---~~~~~~F~l~~~~~~~~  281 (305)
                      +.+|||++++      .+.|++|||||.++.|+||+++.+..|.+.|+|.++.+......   ...+|+|.|.+.+.+.|
T Consensus         2 ik~G~L~k~~~~~~~~~~~Wkkr~~vL~~~~L~y~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~   81 (106)
T d1u5da1           2 IKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRRTY   81 (106)
T ss_dssp             EEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECGGGCSSGGGGGEEEEECSSSCCE
T ss_pred             eEEEEEEEECCCCCCCcCCcEEEEEEEECCEEEEEecccccccccccccCCceEeeccccccccCCceeEEEEcCCCcEE
Confidence            6899999876      35799999999999999999999999999999999888754432   35679999998877889


Q ss_pred             EEEcCCHHHHHHHHHHHHHHHc
Q psy2207         282 VFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       282 ~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      +|+|+|++++++|++||+.++.
T Consensus        82 ~f~a~s~~e~~~W~~ai~~~i~  103 (106)
T d1u5da1          82 EFTATSPAEARDWVDQISFLLK  103 (106)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999998863

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.7e-18  Score=130.74  Aligned_cols=92  Identities=15%  Similarity=0.262  Sum_probs=76.4

Q ss_pred             ceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEE-ccc-----cCCcceeEEEEeCCceeEE
Q psy2207         211 QHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEA-LNE-----QDNFKYVFQLKHQGQDPLV  282 (305)
Q Consensus       211 ~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~-~~~-----~~~~~~~F~l~~~~~~~~~  282 (305)
                      +.+|||.+++  .+.|++|||||+++.|+||+++.+..|.|.|+|.++.+.. ..+     ....+|+|+|.+++ ++|+
T Consensus         2 lk~GwL~k~~~~~~~wkkRwFvL~~~~L~YYk~~~~~~p~g~I~L~~~~~v~~~~~~~~~~~~~~~~~F~I~T~~-rtyy   80 (112)
T d2coaa1           2 LREGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTNRYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIVTAN-ATYF   80 (112)
T ss_dssp             SEEEEEEECCSSSCCCEEEEEEECSSEEEEESSSSCSSCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEECSS-CCCC
T ss_pred             ceEEEEEEECCCCCCeeEEEEEEEcceEEEEeccCCCccceEEeeeccccccccccccccccCCCccEEEEEeCC-eEEE
Confidence            5799999998  7789999999999999999999999999999997655543 222     13467999998655 5677


Q ss_pred             EEc-----------CCHHHHHHHHHHHHHHHc
Q psy2207         283 FGA-----------DNEQSYERWMKAMREATT  303 (305)
Q Consensus       283 f~a-----------~s~e~~~~Wi~al~~a~~  303 (305)
                      |.+           +++++++.|++||++|.+
T Consensus        81 ~~~~~~~~~~~~s~~~~~~~~~W~~aI~~A~~  112 (112)
T d2coaa1          81 VGEMPGGTPGGPSGQGAEAARGWETAIRQALM  112 (112)
T ss_dssp             EECCSCCCSSSCCCCCSHHHHHHHHHHHHHGG
T ss_pred             EecCCccccccccccChHHHHHHHHHHHHhhC
Confidence            755           789999999999999864

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.4e-18  Score=133.65  Aligned_cols=95  Identities=19%  Similarity=0.308  Sum_probs=81.3

Q ss_pred             CCceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEE-ccccCCcceeEEEEeCCceeEEEEc
Q psy2207         209 GSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEA-LNEQDNFKYVFQLKHQGQDPLVFGA  285 (305)
Q Consensus       209 ~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~-~~~~~~~~~~F~l~~~~~~~~~f~a  285 (305)
                      +..+.|||++++  .+.|++|||||+++.|+||+++.+..|.+.|+|.++.+.. ..+..+.++.|.|..+. +.|+|+|
T Consensus        10 ~~~~eG~L~k~~~~~k~WkkrwfvL~~~~L~yY~~~~d~~~~~~i~L~~~~~~~~~~~~~~~~~~F~i~~~~-~~~~f~A   88 (136)
T d1x1fa1          10 PLYFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNSTEKNCAKFTLVLPK-EEVQLKT   88 (136)
T ss_dssp             CEEEEEEEEEECTTCCSCEEEEEEEETTEEEEESCSSCSSCSEECCCSSCCEEEECCCTTSCCCEEEEECSS-CCEEEEC
T ss_pred             CccEEEEEEEECCCCCCeEEEEEEEcCCEeEEEeecccccccccccccceeeeeeecccccccceeeecCCC-ceEEEEe
Confidence            346999999987  6789999999999999999999999999999998775554 33445667999998655 5699999


Q ss_pred             CCHHHHHHHHHHHHHHHcC
Q psy2207         286 DNEQSYERWMKAMREATTL  304 (305)
Q Consensus       286 ~s~e~~~~Wi~al~~a~~~  304 (305)
                      +|++++++|+++|+.++.+
T Consensus        89 es~~e~~~Wi~~I~~v~~~  107 (136)
T d1x1fa1          89 ENTESGEEWRGFILTVTEL  107 (136)
T ss_dssp             SSHHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHhc
Confidence            9999999999999988764

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.5e-17  Score=126.20  Aligned_cols=95  Identities=31%  Similarity=0.607  Sum_probs=81.9

Q ss_pred             CCceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEcc--ccCCcceeEEEEeCC-------
Q psy2207         209 GSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN--EQDNFKYVFQLKHQG-------  277 (305)
Q Consensus       209 ~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~--~~~~~~~~F~l~~~~-------  277 (305)
                      .++++|||++++  .+.|++|||+|.++.|+||+.+.+..+.+.|+|.++.+....  .....+++|+|....       
T Consensus         7 ~~~k~G~L~K~~~~~k~WkkR~fvL~~~~l~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~   86 (118)
T d1v89a_           7 GPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRMG   86 (118)
T ss_dssp             CEEEEEEEEEECSSSSCEEEEEEEEETTEEEEESSSSCCSCSEEECSTTEEEEEECCCSSCCCCCEEEEEESCCSSCCSS
T ss_pred             CCeEEEEEEEECCCCCCcEEEEEEEECCEEEEecccCcccccceeccCceEEEEeccccccCCCcEEEEecCCCcceecC
Confidence            458999999988  778999999999999999999999999999999998887543  234557899998643       


Q ss_pred             ceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         278 QDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       278 ~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      .+.|+|+|++++++++||+||++|+.
T Consensus        87 ~~~~~~~a~s~ee~~~Wi~aI~~a~~  112 (118)
T d1v89a_          87 QDSYVLMASSQAEMEEWVKFLRRVAG  112 (118)
T ss_dssp             CCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCHHHHHHHHHHHHHHHc
Confidence            35699999999999999999999875

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=1.6e-17  Score=138.90  Aligned_cols=96  Identities=20%  Similarity=0.421  Sum_probs=84.3

Q ss_pred             CCCceeeeeeecc------CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEcccc---CCcceeEEEEeCCc
Q psy2207         208 SGSQHSGWLHKKS------GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ---DNFKYVFQLKHQGQ  278 (305)
Q Consensus       208 ~~~~~~G~L~~~~------~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~---~~~~~~F~l~~~~~  278 (305)
                      ..+++.|||++++      .+.|++|||||.++.|+||+++.+..|.+.|+|.++.+......   ..++++|.|.+++.
T Consensus       102 ~~~~k~G~L~K~~~~~~~~~~~Wkkr~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~~~F~i~~~~~  181 (209)
T d1u5ea1         102 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDK  181 (209)
T ss_dssp             SSEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECGGGCSSTTGGGEEEEECSSS
T ss_pred             CCeeEEEEEEEecCCCCCccccceEEEEEEECCEEEEEecCCCCccceEEEecceeeeeccccccccCCCcEEEEEcCCC
Confidence            3457899999987      46899999999999999999999999999999999988755432   35679999998888


Q ss_pred             eeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         279 DPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       279 ~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      ++|+|+|+|+++++.|+.+|+.+++
T Consensus       182 r~~~f~a~s~~e~~~Wi~al~~~i~  206 (209)
T d1u5ea1         182 RIYQFTAASPKDAEEWVQQLKFILQ  206 (209)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            8999999999999999999998864

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=3e-17  Score=125.96  Aligned_cols=93  Identities=24%  Similarity=0.517  Sum_probs=78.6

Q ss_pred             Cceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEe------------
Q psy2207         210 SQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKH------------  275 (305)
Q Consensus       210 ~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~------------  275 (305)
                      +.++|||++++  .+.|++|||||.++.|+||+++.+..|.+.|+|.++.|....+. .++++|++..            
T Consensus         5 p~keG~L~K~~~~~k~WkrR~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   83 (127)
T d1fgya_           5 PDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLDP-RKPNCFELYNPSHKGQVIKACK   83 (127)
T ss_dssp             CSEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEEECCS-SCSSEEEEECSSSTTCCCCCEE
T ss_pred             CceEEEEEEECCCCCCcEEEEEEEECCEEEEEccCCCccccceEeCCCeEEEEccCC-CCCceEEEeccccccccccccc
Confidence            47999999997  77899999999999999999999999999999999888765433 3456666642            


Q ss_pred             ---------CCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         276 ---------QGQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       276 ---------~~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                               .+.+.|+|+|+|++++.+||.||+.|+.
T Consensus        84 ~~~~~~~~~~~~~~~~f~a~s~~e~~~Wi~aL~~~i~  120 (127)
T d1fgya_          84 TEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASIS  120 (127)
T ss_dssp             ECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             cccceeEeeCCCeEEEEECCCHHHHHHHHHHHHHHHc
Confidence                     3456799999999999999999998864

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=2e-17  Score=122.54  Aligned_cols=88  Identities=19%  Similarity=0.385  Sum_probs=77.1

Q ss_pred             ceeeeeeecc---CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCC
Q psy2207         211 QHSGWLHKKS---GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADN  287 (305)
Q Consensus       211 ~~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s  287 (305)
                      +.+|||++++   .+.|++|||+|.++.|+||+++.+..|.+.|+|.++.+....    .+++|.|..++ +.|+|+|+|
T Consensus         2 ik~G~L~K~~~~~~~~W~kr~fvL~~~~L~~~~~~~~~~~~~~i~L~~~~~~~~~----~~~~f~i~~~~-~~~~l~a~s   76 (102)
T d2coda1           2 VKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQ----GDNKFEVVTTQ-RTFVFRVEK   76 (102)
T ss_dssp             CEEEEEEECCSSSSSCCEEEEEEECSSEEEEEESSCCSSCCCEEETTTEEEEEEE----TTTEEEEEESS-CCEEEECSS
T ss_pred             cEEEEEEEECCCCCCCceEEEEEEECCEEEEEeccCcceeEEEEEchhceeeccc----cceeEEEEcCC-cEEEEEeCC
Confidence            5899999987   468999999999999999999999999999999987776542    35799998765 579999999


Q ss_pred             HHHHHHHHHHHHHHHc
Q psy2207         288 EQSYERWMKAMREATT  303 (305)
Q Consensus       288 ~e~~~~Wi~al~~a~~  303 (305)
                      ++++++|+++|+.|+.
T Consensus        77 ~~e~~~Wi~ai~~~i~   92 (102)
T d2coda1          77 EEERNDWISILLNALK   92 (102)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998863

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.9e-17  Score=120.77  Aligned_cols=94  Identities=19%  Similarity=0.359  Sum_probs=78.4

Q ss_pred             Cceeeeeeecc--CCCceEEEEEEECC--EEEEEccCccCccceEEEecCeEEEEcccc-----CCcceeEEEEeCCcee
Q psy2207         210 SQHSGWLHKKS--GRNWKRYWFVLKDQ--VMYKYKASEDIKALLSIPVLGYELEALNEQ-----DNFKYVFQLKHQGQDP  280 (305)
Q Consensus       210 ~~~~G~L~~~~--~~~wkrrw~vL~~~--~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~-----~~~~~~F~l~~~~~~~  280 (305)
                      ++++|||++++  .+.|++|||+|.+.  .|+||+.+.+..|.+.|++.++.+......     ....++|.|.+++.+.
T Consensus         2 v~k~G~L~k~~~~~k~WkkR~fvL~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (104)
T d2i5fa1           2 IIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVH   81 (104)
T ss_dssp             EEEEEEEEEECTTTCCEEEEEEEEETTTTEEEEECTTSCSSCSEEEECTTCEEEEECC--------CCSEEEEECTTCCE
T ss_pred             EEEEEEEEEECCCCCCcEEEEEEEECCeeEEEEEcCccccCccceEeecceEEEEeccCcccccccCccEEEEECCCCeE
Confidence            36899999998  67899999999864  567777788889999999998887743322     3456899999888889


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         281 LVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       281 ~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      |+|+|+|++++++||+||+.|++
T Consensus        82 ~~~~a~s~~e~~~W~~ai~~a~r  104 (104)
T d2i5fa1          82 YFLQAATPKERTEWIKAIQMASR  104 (104)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHC
T ss_pred             EEEEcCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999975

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3e-17  Score=121.38  Aligned_cols=94  Identities=20%  Similarity=0.339  Sum_probs=79.7

Q ss_pred             CCceeeeeeecc--CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccc---cCCcceeEEEEeCCceeEEE
Q psy2207         209 GSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE---QDNFKYVFQLKHQGQDPLVF  283 (305)
Q Consensus       209 ~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~---~~~~~~~F~l~~~~~~~~~f  283 (305)
                      .++.+|||++++  .+.|++|||+|.+..|+||+++.+..|.+.|+|.++.+.....   .....+.|.|.+++ +.|+|
T Consensus         2 ~vik~G~L~K~~~~~~~Wkkr~fvL~~~~l~yy~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~-~~~~~   80 (103)
T d1eaza_           2 AVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTS-RTFYV   80 (103)
T ss_dssp             CCSEEEEEEEECTTTCCEEEEEEEECSSEEEEESSTTCSSCSEEEEGGGCCEEEECTTHHHHTCSSEEEEECSS-CEEEE
T ss_pred             ceEEEEEEEEECCCCCCeeEEEEEEECCEEEEEecccCcccceEEEccceEEeeccccccccccceEEEEEeCC-EEEEE
Confidence            357999999987  7789999999999999999999999999999998776553322   23556899998655 57999


Q ss_pred             EcCCHHHHHHHHHHHHHHHc
Q psy2207         284 GADNEQSYERWMKAMREATT  303 (305)
Q Consensus       284 ~a~s~e~~~~Wi~al~~a~~  303 (305)
                      +|+|+++++.|+.+|+.|+.
T Consensus        81 ~a~s~~e~~~W~~aI~~ai~  100 (103)
T d1eaza_          81 QADSPEEMHSWIKAVSGAIV  100 (103)
T ss_dssp             ECSSHHHHHHHHHHHHHHHH
T ss_pred             EeCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999874

>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: vps27p protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=8.3e-19  Score=119.16  Aligned_cols=61  Identities=34%  Similarity=0.817  Sum_probs=54.8

Q ss_pred             eeecCCCcccccccccccccccccccccccceeccCccCCeecccCCC-CccccccHhhHHHHHh
Q psy2207          78 WIPDSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKK-FRNFRVCEECYHYLVQ  141 (305)
Q Consensus        78 w~~d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~-~~~~rvC~~C~~~~~~  141 (305)
                      |++++   .|+.|+.+|++++|+||||+||.+||..|+.++++||..+ ..++|||+.||+.+..
T Consensus         2 W~~~~---~C~~C~~~F~~~~rkhhCr~CG~~fC~~Cs~~~~~l~~~~~~~p~RVC~~C~~~~~~   63 (67)
T d1vfya_           2 WIDSD---ACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCFEDYEF   63 (67)
T ss_dssp             CCCCS---BCTTTCCBCBTTBCCEECTTTCCEECGGGSCEEEEEGGGTEEEEEEECHHHHHHHHH
T ss_pred             CCcCc---ccccCCCcccCcccccccccCCCEecccccCCcEECcccCCCCCcEeCHHHHHHHHH
Confidence            88764   6999999999999999999999999999999999998654 6789999999998753

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5.4e-17  Score=126.03  Aligned_cols=93  Identities=26%  Similarity=0.525  Sum_probs=74.4

Q ss_pred             ceeeeeeecc------------CCCceEEEEEEECCEEEEEccCcc----CccceEEEecCeEEEEccccCCcceeEEEE
Q psy2207         211 QHSGWLHKKS------------GRNWKRYWFVLKDQVMYKYKASED----IKALLSIPVLGYELEALNEQDNFKYVFQLK  274 (305)
Q Consensus       211 ~~~G~L~~~~------------~~~wkrrw~vL~~~~L~~y~~~~d----~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~  274 (305)
                      ..+|||+++.            .+.|++|||||+++.|+||+++.+    ..|.+.|+|.++.|....+...++|+|.|.
T Consensus         2 ~KeG~L~~k~~~~~~~kk~~~~~k~Wkkr~fvL~~~~L~~y~~~~~~~~~~~~~~~i~L~~~~v~~~~~~~~r~~~F~i~   81 (133)
T d2j59m1           2 AKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLIDISYSETKRKNVFRLT   81 (133)
T ss_dssp             CEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC--------CEECSSCEEEECSSSCSCSSEEEEE
T ss_pred             CceEEEEeeccccccccccCCCCCCceEEEEEEeCCEEEEEeccccccccccccccceecceEEEEcccccccCceeEEe
Confidence            4789998531            457999999999999999998654    357788999999998777667788999999


Q ss_pred             eCCceeEEEEcCCHHHHHHHHHHHHHHHcC
Q psy2207         275 HQGQDPLVFGADNEQSYERWMKAMREATTL  304 (305)
Q Consensus       275 ~~~~~~~~f~a~s~e~~~~Wi~al~~a~~~  304 (305)
                      +.+. .|+|+|+|+++++.||.+|+.|+..
T Consensus        82 ~~~~-~~~f~A~s~~e~~~Wi~ai~~a~~~  110 (133)
T d2j59m1          82 TSDC-ECLFQAEDRDDMLAWIKTIQESSNL  110 (133)
T ss_dssp             CSSC-EEEEECSSHHHHHHHHHHHHHHCCC
T ss_pred             cCCC-EEEEEeCCHHHHHHHHHHHHHHHhc
Confidence            7664 6999999999999999999988754

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.8e-17  Score=130.34  Aligned_cols=96  Identities=25%  Similarity=0.367  Sum_probs=78.7

Q ss_pred             CCCCceeeeeeecc--------CCCceEEEEEEECC-----EEEEEccC-ccCccceEEEecCeEEEEccccCCcceeEE
Q psy2207         207 DSGSQHSGWLHKKS--------GRNWKRYWFVLKDQ-----VMYKYKAS-EDIKALLSIPVLGYELEALNEQDNFKYVFQ  272 (305)
Q Consensus       207 ~~~~~~~G~L~~~~--------~~~wkrrw~vL~~~-----~L~~y~~~-~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~  272 (305)
                      ...++++|||+|++        .+.|++|||||++.     .|.||+++ .+..|.+.|+|.++.+..... ..++++|.
T Consensus        15 ~~~v~k~G~L~K~~~~~~~~~~~k~WkkR~fvL~~~~~~~~~L~yy~~~~~~~~~~g~i~l~~~~~~~~~~-~~~~~~F~   93 (150)
T d1wg7a_          15 KGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQNN-KVRRFAFE   93 (150)
T ss_dssp             SCCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCSSCCSEEECTTTCCEECCCC-SSCTTEEE
T ss_pred             CCCEeEEEEEEEecCCCCcccccccceEEEEEEEcCcCCceeEEEEeccccccccccccccccccccccCc-cccceEEE
Confidence            34468999999986        25799999999743     57777654 467899999999888775544 45679999


Q ss_pred             EEeCCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         273 LKHQGQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       273 l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      |.+++.+.|+|+|+|+++++.||.||+.|+.
T Consensus        94 i~~~~~~~~~l~A~s~~e~~~Wi~aL~~~i~  124 (150)
T d1wg7a_          94 LKMQDKSSYLLAADSEVEMEEWITILNKILQ  124 (150)
T ss_dssp             EECSSSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEcCCCeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            9988888899999999999999999998864

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=99.70  E-value=4.5e-17  Score=121.17  Aligned_cols=90  Identities=22%  Similarity=0.449  Sum_probs=77.7

Q ss_pred             eeeeeeecc----------CCCceEEEEEEECCEEEEEccCcc------CccceEEEecCeEEEEccccCCcceeEEEEe
Q psy2207         212 HSGWLHKKS----------GRNWKRYWFVLKDQVMYKYKASED------IKALLSIPVLGYELEALNEQDNFKYVFQLKH  275 (305)
Q Consensus       212 ~~G~L~~~~----------~~~wkrrw~vL~~~~L~~y~~~~d------~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~  275 (305)
                      ++|||+++.          .+.|++|||||.++.|+||+++.+      ..+.+.|+|.++.+........++++|.|..
T Consensus         1 ~eG~L~rk~~~~~~~kk~~~~~Wk~r~~vL~~~~L~~yk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~f~i~~   80 (106)
T d1btna_           1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKKKKHVFKLRL   80 (106)
T ss_dssp             CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEEECSSCCSSSSEEEEEC
T ss_pred             CeeeEEEeeEccCCCcccCCCCCcEEEEEEECCEEEEEeChhhcccccccCcceeEEeccceeeeccccccCcceEeecc
Confidence            579999763          457999999999999999998653      4467789999998888777667789999998


Q ss_pred             CCceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207         276 QGQDPLVFGADNEQSYERWMKAMREA  301 (305)
Q Consensus       276 ~~~~~~~f~a~s~e~~~~Wi~al~~a  301 (305)
                      .+++.|+|+|+|++++++|+++|+.|
T Consensus        81 ~~~~~~~~~a~s~~e~~~W~~ai~~A  106 (106)
T d1btna_          81 SDGNEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             TTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhC
Confidence            88888999999999999999999876

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.6e-17  Score=124.54  Aligned_cols=96  Identities=26%  Similarity=0.460  Sum_probs=72.6

Q ss_pred             CCCceeeeeeecc---CCCceEEEEEEECC--EEEEEcc--CccCccceEEEecCeEEEEcccc---CCcceeEEEEeCC
Q psy2207         208 SGSQHSGWLHKKS---GRNWKRYWFVLKDQ--VMYKYKA--SEDIKALLSIPVLGYELEALNEQ---DNFKYVFQLKHQG  277 (305)
Q Consensus       208 ~~~~~~G~L~~~~---~~~wkrrw~vL~~~--~L~~y~~--~~d~~p~~~i~L~~~~v~~~~~~---~~~~~~F~l~~~~  277 (305)
                      ....++|||++++   .+.|++|||||.+.  .+|||..  ..+..|.+.|+|.++.+......   ....+.|.|. ..
T Consensus         6 ~~~~~~G~L~K~g~~~~k~WkkRwfvL~~~~~~~yy~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~i~-~~   84 (126)
T d1wi1a_           6 SGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAV-KE   84 (126)
T ss_dssp             CCEEEEEEEEEECSSSCCSCEEEEEEEEEEETTEEEEEECCSSSSCCSEEEECSSCEEEECCCCSSCCSCSSEEEEE-CS
T ss_pred             CCCcEEEEEEEECCCCCCCceEEEEEEeCCceEEEEEcccccccccceeeeeeceeeeeeccccccccccceeEEec-cC
Confidence            3457999999997   57899999999754  4555544  34467899999988887754322   2334556665 66


Q ss_pred             ceeEEEEcCCHHHHHHHHHHHHHHHcC
Q psy2207         278 QDPLVFGADNEQSYERWMKAMREATTL  304 (305)
Q Consensus       278 ~~~~~f~a~s~e~~~~Wi~al~~a~~~  304 (305)
                      .++|+|+|+|++++..||+||+.|+.-
T Consensus        85 ~r~~~f~A~s~~e~~~Wv~al~~a~~~  111 (126)
T d1wi1a_          85 GDTVIFASDDEQDRILWVQAMYRATGQ  111 (126)
T ss_dssp             SCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             CeEEEEEECCHHHHHHHHHHHHHHHHh
Confidence            678999999999999999999998753

>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Zinc finger FYVE domain containing protein 19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=3.9e-18  Score=121.82  Aligned_cols=61  Identities=25%  Similarity=0.558  Sum_probs=56.8

Q ss_pred             CCcccccccccccccccccccccccceeccCccCCeecccCCCCccccccHhhHHHHHhcc
Q psy2207          83 RVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQEF  143 (305)
Q Consensus        83 ~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~~~~  143 (305)
                      ..+.|+.|..+|++++|+||||+||.+||..|+.++++||..+..++|||+.||..|....
T Consensus         8 ~~s~C~~C~~~Fs~~~rrhhCr~CG~vfC~~Cs~~~~~lp~~~~~~~RVC~~C~~~l~~~~   68 (88)
T d1wfka_           8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTILTRGS   68 (88)
T ss_dssp             CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHHHHCC
T ss_pred             ccCcCcccCchhccccccccccccChhhChHHhCCccccCCCCCCCCeECHHHHHHHHhcc
Confidence            4568999999999999999999999999999999999999888899999999999998653

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=8.2e-17  Score=121.76  Aligned_cols=95  Identities=25%  Similarity=0.375  Sum_probs=77.9

Q ss_pred             CCCceeeeeeecc--CCCceEEEEEEE--CCEEEEEccCccCccceEEEecCeEEEEcccc-------CCcceeEEEEeC
Q psy2207         208 SGSQHSGWLHKKS--GRNWKRYWFVLK--DQVMYKYKASEDIKALLSIPVLGYELEALNEQ-------DNFKYVFQLKHQ  276 (305)
Q Consensus       208 ~~~~~~G~L~~~~--~~~wkrrw~vL~--~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~-------~~~~~~F~l~~~  276 (305)
                      ..+.++|||++++  .+.|++|||||+  +..|+||+.+.+..|.+.|+|.++.+......       ....+.|.+...
T Consensus         6 s~~~~eG~L~k~~~~~k~WkkR~fvL~~~~~~L~~~~~~~~~~p~g~i~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~   85 (117)
T d1v5ua_           6 SGRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKTT   85 (117)
T ss_dssp             CSSSEEEEEEECCCSSSCCEEEEEEEETTTTEEEEESSSSCSSCCCEEEGGGEEEEECCCCCTTSCSSSCTTTCEEEEES
T ss_pred             CCCeEEEEEEEECCCCCCceEEEEEEeCCCCEEEecccccccCcceEEEecceEEEeecccccccccccccceEEEeeCC
Confidence            4467999999998  778999999996  46899999999999999999998877643221       223467777655


Q ss_pred             CceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         277 GQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       277 ~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                       .+.|+|+|+|++++++||.+|+.|+.
T Consensus        86 -~~~~~~~a~s~~e~~~Wv~~l~~ai~  111 (117)
T d1v5ua_          86 -RRVYNFCAQDVPSAQQWVDRIQSCLS  111 (117)
T ss_dssp             -SCEEEEECSSHHHHHHHHHHHHTTCC
T ss_pred             -CcEEEEEeCCHHHHHHHHHHHHHHHh
Confidence             46799999999999999999998764

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.69  E-value=1.6e-16  Score=120.91  Aligned_cols=93  Identities=18%  Similarity=0.266  Sum_probs=73.6

Q ss_pred             CCCceeeeeeecc---CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEE
Q psy2207         208 SGSQHSGWLHKKS---GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFG  284 (305)
Q Consensus       208 ~~~~~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~  284 (305)
                      .++++.|||++++   .+.|++|||||.++.|+||+++.+  +.+.|+|.++..+... ....+++|.|.+.+.+.|+|+
T Consensus         8 ~~~i~eG~L~K~g~~~~~~WkkR~fvL~~~~L~yy~~~~~--~~~~i~l~~~~~v~~~-~~~~~~~f~i~~~~~~~~~f~   84 (119)
T d1omwa2           8 KDCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGEGEA--PQSLLTMEEIQSVEET-QIKERKCLLLKIRGGKQFVLQ   84 (119)
T ss_dssp             SCCCEEEEEEECC------CEEEEEEEETTEEEEECTTSC--CCEEEEGGGEEEEEEE-ESSSCEEEEEEETTSCEEEEE
T ss_pred             CCeEEEEEEEEECCCCCCCeEEEEEEEEcCeEEEEecccc--cCccceeccccccccc-cccccceEEEEcCCCcEEEEE
Confidence            3468999999997   456999999999999999987765  4567888655444332 234567899988888889999


Q ss_pred             cCCHHHHHHHHHHHHHHHc
Q psy2207         285 ADNEQSYERWMKAMREATT  303 (305)
Q Consensus       285 a~s~e~~~~Wi~al~~a~~  303 (305)
                      |+|++++.+|+++|+.|..
T Consensus        85 a~s~~e~~~W~~al~~a~~  103 (119)
T d1omwa2          85 CDSDPELVQWKKELRDAYR  103 (119)
T ss_dssp             CSSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            9999999999999998864

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=99.69  E-value=1.3e-16  Score=121.83  Aligned_cols=96  Identities=23%  Similarity=0.394  Sum_probs=79.2

Q ss_pred             CCCceeeeeeecc----------CCCceEEEEEEECCEEEEEccCccCc------cceEEEecCeEEEEccccCCcceeE
Q psy2207         208 SGSQHSGWLHKKS----------GRNWKRYWFVLKDQVMYKYKASEDIK------ALLSIPVLGYELEALNEQDNFKYVF  271 (305)
Q Consensus       208 ~~~~~~G~L~~~~----------~~~wkrrw~vL~~~~L~~y~~~~d~~------p~~~i~L~~~~v~~~~~~~~~~~~F  271 (305)
                      ..+.++|||+++.          .+.|++|||||+++.|+||+++.+..      +...+.+..+.+........++|+|
T Consensus         6 ~g~~~eG~L~rk~~~~~~~kr~~~k~Wkkrw~vL~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f   85 (123)
T d1wjma_           6 SGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAFDYRKRKHVF   85 (123)
T ss_dssp             CCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCEEEECTTCSSCSSEE
T ss_pred             CCCeeEEEEEEEeeccccCcccCCCCCcEEEEEEECCEEEEEecchhccccccccccccccccceeEEecccccccCcEE
Confidence            3457999998764          45799999999999999999765433      3345666777887777667788999


Q ss_pred             EEEeCCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         272 QLKHQGQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       272 ~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      .|.+.+.+.|+|+|+|++++++||++|+.|+.
T Consensus        86 ~i~~~~~~~~~l~a~s~~e~~~Wi~aI~~a~~  117 (123)
T d1wjma_          86 KLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIA  117 (123)
T ss_dssp             EEECSSSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEcCCCcEEEEECCCHHHHHHHHHHHHHHHh
Confidence            99988888999999999999999999998864

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.8e-17  Score=122.57  Aligned_cols=91  Identities=14%  Similarity=0.432  Sum_probs=71.0

Q ss_pred             Cceeeeeeecc-----CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCC-ceeEEE
Q psy2207         210 SQHSGWLHKKS-----GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQG-QDPLVF  283 (305)
Q Consensus       210 ~~~~G~L~~~~-----~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~-~~~~~f  283 (305)
                      +..+|||+++.     .+.|++|||||+++.|+||+.. +..|.+.|+|.++.|...++ ..+.++|+|...+ .+.|+|
T Consensus         5 ~~k~G~L~k~~~~g~~~k~W~kRwfvL~~~~L~y~~~~-~~~~~~~i~l~~~~v~~~~~-~~~~~~f~i~~~~~~~~~~l   82 (101)
T d2elba2           5 TRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARG-DVAGGLAMDIDNCSVMAVDC-EDRRYCFQITSFDGKKSSIL   82 (101)
T ss_dssp             SCCEEEEEECSCCC----CCCEEEEEEETTEEEEECTT-CCCE----EEEECCCCCCCC-CCSSSSSEECCCSSSCCCCE
T ss_pred             ccEeEEEEEeccCCCCccccEEEEEEEeCCEEEEEccC-CcccceEEEecccccccccc-cCCcceEEEEeecccceEEE
Confidence            46899999874     5679999999999999988865 45788899998888776544 4667999998643 468999


Q ss_pred             EcCCHHHHHHHHHHHHHHH
Q psy2207         284 GADNEQSYERWMKAMREAT  302 (305)
Q Consensus       284 ~a~s~e~~~~Wi~al~~a~  302 (305)
                      +|+|++++.+||.||+.++
T Consensus        83 ~A~s~~e~~~Wi~al~~vs  101 (101)
T d2elba2          83 QAESKKDHEEWICTINNIS  101 (101)
T ss_dssp             ECSSHHHHHHHHHHHHHTC
T ss_pred             ECCCHHHHHHHHHHHHhcC
Confidence            9999999999999999864

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2e-16  Score=128.00  Aligned_cols=94  Identities=20%  Similarity=0.246  Sum_probs=75.7

Q ss_pred             CCceeeeeeecc-------CCCceEEEEEEECCEEEEEccCcc----CccceEEEecCeEEEEcccc-------------
Q psy2207         209 GSQHSGWLHKKS-------GRNWKRYWFVLKDQVMYKYKASED----IKALLSIPVLGYELEALNEQ-------------  264 (305)
Q Consensus       209 ~~~~~G~L~~~~-------~~~wkrrw~vL~~~~L~~y~~~~d----~~p~~~i~L~~~~v~~~~~~-------------  264 (305)
                      .++++|||.|++       ...|++|||||.++.|+||+++.+    ..+.|.|+|.++.++.....             
T Consensus         2 ~vi~eG~L~Kr~~~k~k~~~~~WkrRwFVL~~~~L~Yyk~~~~~~~~~~~kG~I~L~~~~~v~~~~~~~~~~~~~~~~~~   81 (169)
T d1btka_           2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRR   81 (169)
T ss_dssp             CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---
T ss_pred             cEEEEEEEEEecCCCCCcCcCCceEEEEEEECCEEeeeccccccccccCccceEeccceEEEEeecccCCCCcccccccc
Confidence            368999999987       226999999999999999987654    35789999988776532110             


Q ss_pred             -------------CCcceeEEEEeCCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         265 -------------DNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       265 -------------~~~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                                   ....+.|+|+++. ++|+|+|+|++++++||++|++|+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~F~I~t~~-rt~~l~A~s~eE~~~WI~aL~~~i~  132 (169)
T d1btka_          82 GEESSEMEQISIIERFPYPFQVVYDE-GPLYVFSPTEELRKRWIHQLKNVIR  132 (169)
T ss_dssp             ------CCTTHHHHCCCEEEEEEETT-CCEEEEESCHHHHHHHHHHHHHHHT
T ss_pred             ccccccccccccccccCcceEEEeCC-cEEEEECCCHHHHHHHHHHHHHHHH
Confidence                         1345899999655 5799999999999999999999875

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=8.1e-17  Score=121.45  Aligned_cols=95  Identities=20%  Similarity=0.409  Sum_probs=75.6

Q ss_pred             CCCceeeeeeecc--CCCceEEEEEEECC--EEEEEcc-CccCccceEEEecCeEEEEcccc--------CCcceeEEEE
Q psy2207         208 SGSQHSGWLHKKS--GRNWKRYWFVLKDQ--VMYKYKA-SEDIKALLSIPVLGYELEALNEQ--------DNFKYVFQLK  274 (305)
Q Consensus       208 ~~~~~~G~L~~~~--~~~wkrrw~vL~~~--~L~~y~~-~~d~~p~~~i~L~~~~v~~~~~~--------~~~~~~F~l~  274 (305)
                      ..++++|||++++  .+.|++|||+|.+.  .++||.. ..+..|.+.|+|.++.+......        ....+.|.|.
T Consensus         9 ~~v~k~G~L~K~~~~~k~WkkR~fvL~~~~~~~~~~~~~~~~~~p~~~i~L~~~~i~~~~~~~~~~~~~~~~~~~~f~i~   88 (116)
T d1x1ga1           9 GTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVI   88 (116)
T ss_dssp             SEEEEEEEEEEECSSSSSEEEEEEEEEESSCEEEEECSSSCCSSCSCCEESTTCCCEECCSSSSCSSCSSCCCSSCEEEC
T ss_pred             CCEEEEEEEEEEcCCCCCCceEEEEEECCCcEEEEeccccccccceeEEEcCCCEEEEecccCcccccccccccceeEEE
Confidence            3468999999988  77899999999753  4555543 44568999999988877643321        2345789999


Q ss_pred             eCCceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         275 HQGQDPLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       275 ~~~~~~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      +.+.+.|+|+|+|++++++|++||++++
T Consensus        89 ~~~~~~~~f~a~s~ee~~~Wi~ai~~~t  116 (116)
T d1x1ga1          89 TKDDTHYYIQASSKAERAEWIEAIKKLT  116 (116)
T ss_dssp             CTTCCCEEECCSSHHHHHHHHHHHHHHS
T ss_pred             eCCCeEEEEECCCHHHHHHHHHHHHhhC
Confidence            8888899999999999999999999874

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.3e-16  Score=116.69  Aligned_cols=88  Identities=19%  Similarity=0.329  Sum_probs=73.1

Q ss_pred             CceeeeeeeccCCCceEEEEEEECC-------EEEEEccCc-----cCccceEEEecCeEEEEccccCCcceeEEEEeCC
Q psy2207         210 SQHSGWLHKKSGRNWKRYWFVLKDQ-------VMYKYKASE-----DIKALLSIPVLGYELEALNEQDNFKYVFQLKHQG  277 (305)
Q Consensus       210 ~~~~G~L~~~~~~~wkrrw~vL~~~-------~L~~y~~~~-----d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~  277 (305)
                      +.++|||+++  +.|++|||||.+.       .|+||+++.     +..|.+.|+|.++...........+++|+|.+++
T Consensus         2 v~k~GyL~K~--k~WkkR~fvL~~~~~~~~~~~L~yy~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~f~i~t~~   79 (103)
T d1qqga1           2 VRKVGYLRKP--KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRADSKNKHLVALYTRD   79 (103)
T ss_dssp             EEEEEEEECT--TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEECCSSCSSEEEEEESS
T ss_pred             cceeEEEEEc--CCCCEEEEEEecccccCCccEEEEEcchhhhhcccccccceEecceeeEEeecccCCCceEEEEEeCC
Confidence            4689999885  5899999999753       599999753     4668899999988776555556677999998765


Q ss_pred             ceeEEEEcCCHHHHHHHHHHHHH
Q psy2207         278 QDPLVFGADNEQSYERWMKAMRE  300 (305)
Q Consensus       278 ~~~~~f~a~s~e~~~~Wi~al~~  300 (305)
                       ++|+|+|+|++++++||+||++
T Consensus        80 -r~~~l~A~s~~e~~~Wi~al~~  101 (103)
T d1qqga1          80 -EHFAIAADSEAEQDSWYQALLQ  101 (103)
T ss_dssp             -CEEEEECSSHHHHHHHHHHHHH
T ss_pred             -eEEEEEcCCHHHHHHHHHHHHh
Confidence             5799999999999999999986

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=1.9e-16  Score=121.56  Aligned_cols=93  Identities=14%  Similarity=0.266  Sum_probs=69.8

Q ss_pred             ceeeeeeecc---CCCceEEEEEEE--CCEEEEEccCccCccceEEEec-----CeEEE-Ecc--ccCCcceeEEEEeCC
Q psy2207         211 QHSGWLHKKS---GRNWKRYWFVLK--DQVMYKYKASEDIKALLSIPVL-----GYELE-ALN--EQDNFKYVFQLKHQG  277 (305)
Q Consensus       211 ~~~G~L~~~~---~~~wkrrw~vL~--~~~L~~y~~~~d~~p~~~i~L~-----~~~v~-~~~--~~~~~~~~F~l~~~~  277 (305)
                      .++|||++++   .+.|+||||||.  ++.|+||+++.+..+.+.++|.     .+... ...  ......++|.+. +.
T Consensus        16 ~~~GyL~k~~~~~~k~WkrRwFvL~~~~~~L~yy~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   94 (126)
T d1v5pa_          16 RICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVIN-AL   94 (126)
T ss_dssp             CEECCEEEECTTCSSCEEEEEEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTTSCSCSSEEEEE-CS
T ss_pred             ceeeeEEEECCCCCCCeeEEEEEEEcCCCeEEEeeccccccccceeecccceeeeeeccccccccccccccceEEEc-CC
Confidence            6899999886   668999999994  7899999988776666555443     32222 111  122445788886 55


Q ss_pred             ceeEEEEcCCHHHHHHHHHHHHHHHcC
Q psy2207         278 QDPLVFGADNEQSYERWMKAMREATTL  304 (305)
Q Consensus       278 ~~~~~f~a~s~e~~~~Wi~al~~a~~~  304 (305)
                      .+.|+|+|+|++++++||+||++|++.
T Consensus        95 ~r~~~l~Aes~~e~~~Wi~aL~~A~~~  121 (126)
T d1v5pa_          95 SQRYFLQANDQKDLKDWVEALNQASKS  121 (126)
T ss_dssp             SCEEEEECSSHHHHHHHHHHHHHTTTT
T ss_pred             CeeEEEECCCHHHHHHHHHHHHHHhcc
Confidence            677999999999999999999999763

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=2e-16  Score=123.38  Aligned_cols=97  Identities=13%  Similarity=0.185  Sum_probs=78.7

Q ss_pred             CCCCceeeeeeecc----------CCCceEEEEEEECC------EEEEEccCccCccceEEEecCeEEEE---ccccCCc
Q psy2207         207 DSGSQHSGWLHKKS----------GRNWKRYWFVLKDQ------VMYKYKASEDIKALLSIPVLGYELEA---LNEQDNF  267 (305)
Q Consensus       207 ~~~~~~~G~L~~~~----------~~~wkrrw~vL~~~------~L~~y~~~~d~~p~~~i~L~~~~v~~---~~~~~~~  267 (305)
                      ...+.+.|||.++.          .+.|++|||||+++      .|+||+++.+..|.+.|+|.++....   ..+...+
T Consensus        15 ~~~v~keG~L~~~~~~~~~~~~~~~~~WkkrwfvL~~~~~~~~~~L~yy~~~~~~k~~g~i~l~~~~~~~~~~~~~~~~~   94 (136)
T d1v5ma_          15 LVDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSIPLSAIIEVRTTMPLEMPEK   94 (136)
T ss_dssp             SCSCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSCSSCEETTTCCBCCCCCCSSSCCC
T ss_pred             cceeeEEEEEEeeccccccCCCCCCCCceEEEEEEeCCcccchhhhhhhCcccccCcCcceecccceeeeeeccccCCCC
Confidence            44567999997531          56799999999864      58999999999999999997654432   2233467


Q ss_pred             ceeEEEEeCCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         268 KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       268 ~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      +|+|.|.+.+.+.|+|+|+|++++++||++|+.|+.
T Consensus        95 ~~~F~l~t~~~~~y~f~A~s~~e~~~Wv~ai~~ai~  130 (136)
T d1v5ma_          95 DNTFVLKVENGAEYILETIDSLQKHSWVADIQGCVD  130 (136)
T ss_dssp             TTEECCBCTTSCBEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHh
Confidence            799999988877899999999999999999998864

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=2.4e-16  Score=120.28  Aligned_cols=96  Identities=18%  Similarity=0.398  Sum_probs=78.1

Q ss_pred             CCCceeeeeeecc----------CCCceEEEEEEECCEEEEEccCccCcc--------ceEEEecCeEEEEccccCCcce
Q psy2207         208 SGSQHSGWLHKKS----------GRNWKRYWFVLKDQVMYKYKASEDIKA--------LLSIPVLGYELEALNEQDNFKY  269 (305)
Q Consensus       208 ~~~~~~G~L~~~~----------~~~wkrrw~vL~~~~L~~y~~~~d~~p--------~~~i~L~~~~v~~~~~~~~~~~  269 (305)
                      .+..++|||+++.          .+.|++|||||+++.|+||+++.+..+        ...|.+.++.+.........++
T Consensus         6 ~~~~~eG~L~rk~~~~~~~kk~~~~~W~kr~~vL~~~~L~yy~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~   85 (122)
T d1droa_           6 AGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIASDYTKKKH   85 (122)
T ss_dssp             SSSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCSSCCCEECCSSSSSTT
T ss_pred             CCcceEEEEEEeecccccCcccCCCCceEEEEEEeCCEEEEEcCcccccccCcccccccceEeccceEEEeccccccccc
Confidence            3457999999764          346999999999999999998765433        3455666666666655567789


Q ss_pred             eEEEEeCCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         270 VFQLKHQGQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       270 ~F~l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      +|.|.+.+...|+|+|+|+++++.||.||+.++.
T Consensus        86 ~~~l~~~~~~~~~f~a~s~~d~~~Wv~al~~~~~  119 (122)
T d1droa_          86 VLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSD  119 (122)
T ss_dssp             EEEEECSSSCEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred             eEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHh
Confidence            9999998888899999999999999999998875

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.5e-16  Score=120.33  Aligned_cols=97  Identities=19%  Similarity=0.404  Sum_probs=74.2

Q ss_pred             CCCCceeeeeeecc--CCCceEEEEEEEC-CEEEEEccCccCccceEEEecCeEEE---EccccCCcceeEEEEeC---C
Q psy2207         207 DSGSQHSGWLHKKS--GRNWKRYWFVLKD-QVMYKYKASEDIKALLSIPVLGYELE---ALNEQDNFKYVFQLKHQ---G  277 (305)
Q Consensus       207 ~~~~~~~G~L~~~~--~~~wkrrw~vL~~-~~L~~y~~~~d~~p~~~i~L~~~~v~---~~~~~~~~~~~F~l~~~---~  277 (305)
                      ...+++.|||++++  .+.|++|||||.+ +.|+||....+..+.+.|+|.++.+.   ........+++|.|...   .
T Consensus         4 ~~~v~k~G~L~K~~~~~k~Wk~RwfvL~~~~~l~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~   83 (118)
T d1unqa_           4 DVAIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWTT   83 (118)
T ss_dssp             GGCEEEEEEEEEECSSSCCEEEEEEEEETTSEEEEESSCCCSHHHHTSCSEEEECTTCEEEEECSSSTTEEEEEEEETTE
T ss_pred             cCCEEEEEEEEEECCCCCCcEEEEEEEeccceeEEEeeccCccccccccccceEEeecccccccccCCceEEEEeccccc
Confidence            34568999999998  7789999999975 68888988887777777777554432   11122345689998752   2


Q ss_pred             ceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         278 QDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       278 ~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      ...|+|+|+|++++++|++||+.|+.
T Consensus        84 ~~~~~f~a~s~~e~~~Wi~ai~~~~~  109 (118)
T d1unqa_          84 VIERTFHVETPEEREEWTTAIQTVAD  109 (118)
T ss_dssp             EEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            34589999999999999999998764

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1e-15  Score=120.42  Aligned_cols=90  Identities=12%  Similarity=0.059  Sum_probs=74.0

Q ss_pred             CCCceeeeeeeccCCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEEEcCC
Q psy2207         208 SGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADN  287 (305)
Q Consensus       208 ~~~~~~G~L~~~~~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f~a~s  287 (305)
                      ..+++.|||+|+++..|++|||||+++.|+||+++.+..+.|.|+|..+.....    ..+++|.|.+++ ++|+|.|++
T Consensus        46 ~~ilK~G~L~Kr~~~~wkkR~FvL~~~~L~YYkd~~~~~~kG~I~L~~~~~v~~----~~~~~F~I~t~~-Rty~l~a~~  120 (147)
T d1w1ha_          46 NLILKMGPVDKRKGLFARRRQLLLTEGPHLYYVDPVNKVLKGEIPWSQELRPEA----KNFKTFFVHTPN-RTYYLMDPS  120 (147)
T ss_dssp             CCEEEEEEEEECCTTSCEEEEEEEETTTEEEEEETTTTEEEEEECCCTTCEEEE----EETTEEEEECSS-CEEEEECTT
T ss_pred             CeEEEEEEEEeecCCcceEEEEEEcCCeeEEEeCCCcccccceEEecccccccc----ccCceEEEecCc-eEEEEEcCh
Confidence            446899999999877899999999999999999999999999999966544322    234699998654 689999866


Q ss_pred             HHHHHHHHHHHHHHHc
Q psy2207         288 EQSYERWMKAMREATT  303 (305)
Q Consensus       288 ~e~~~~Wi~al~~a~~  303 (305)
                       .++..|+.||+.+.+
T Consensus       121 -~d~~~Wv~aI~~v~~  135 (147)
T d1w1ha_         121 -GNAHKWCRKIQEVWR  135 (147)
T ss_dssp             -SCHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHH
Confidence             579999999998754

>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Rififylin (FYVE-RING finger protein Sakura)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.4e-14  Score=91.89  Aligned_cols=49  Identities=29%  Similarity=0.651  Sum_probs=41.3

Q ss_pred             cccccccccccccccccccccccceeccCccCCeecccCCCCccccccHhhHHHHH
Q psy2207          85 SMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLV  140 (305)
Q Consensus        85 ~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~  140 (305)
                      +.|+.|+.+|++++|+||||.||.+||..|+.+.       .++.|||+.|+....
T Consensus         1 p~C~~C~~~F~~~~rkhhCr~CG~~fC~~Cs~~~-------~~~~RvC~~C~~~r~   49 (51)
T d1y02a2           1 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQV-------GNGPRLCLLCQRFRA   49 (51)
T ss_dssp             CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-----------CCEEHHHHHHHH
T ss_pred             CCccccCCcccCCccCcccccCCcccCccccCCC-------CCCCeECHhHhhHhh
Confidence            4699999999999999999999999999999864       345699999998664

>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Effector domain of rabphilin-3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.21  E-value=1.8e-12  Score=98.65  Aligned_cols=100  Identities=15%  Similarity=0.171  Sum_probs=68.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcccCcCCCCCeeeecCCCcccccccccccc-ccccccccccc
Q psy2207          29 RSANERLEWIDAIQTAIKENEQHLLSFLNRRSLTQSSIPELNLGKVAPLWIPDSRVSMCQRCTSVFTV-TFRRHHCRACG  107 (305)
Q Consensus        29 ~s~~ek~~W~~~i~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~w~~d~~~~~C~~C~~~f~~-~~rrhhCr~cg  107 (305)
                      -|++|++.|++.|+++..........+.......          .....|+.+.....|+.|+.+|++ .+++|||+.||
T Consensus         3 LT~eE~~~i~~VL~r~~~l~~~E~~rl~~l~~~l----------~~~~~~~~~~~~~~C~~C~~~f~~~~~~~~~C~~C~   72 (124)
T d1zbdb_           3 LTDEEKEIINRVIARAEKMETMEQERIGRLVDRL----------ETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCK   72 (124)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHTCCSCSSSBCSSSCCBCSTTSCCEEECTTTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhhhccCCCcCcccCCcccCCCCCCCcCccCC
Confidence            3789999999999987544222211111110000          000134556667899999999995 57889999999


Q ss_pred             ceeccCccCCeecccCCCCccccccHhhHHHHHh
Q psy2207         108 KVVCGPCSDYLAPLEYKKFRNFRVCEECYHYLVQ  141 (305)
Q Consensus       108 ~v~C~~Cs~~~~~l~~~~~~~~rvC~~C~~~~~~  141 (305)
                      .+||..|+.+..   +..+.+.++|..|+....-
T Consensus        73 ~~~C~~C~~~~~---~~~~~~~w~C~~C~k~re~  103 (124)
T d1zbdb_          73 KNVCTKCGVETS---NNRPHPVWLCKICLEQREV  103 (124)
T ss_dssp             CEEETTSEEECC---CSSSSCCEEEHHHHHHHHH
T ss_pred             cccccCCCCCcc---CCCCCCCEECccCcchHHH
Confidence            999999986532   2345688999999998753

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=3e-10  Score=87.11  Aligned_cols=96  Identities=18%  Similarity=0.318  Sum_probs=77.9

Q ss_pred             CCCceeeeeeecc--CCCceEEEEEEECCEEEEEccCccC---ccceEEEecCeEEEEccccCCcceeEEEEeCCceeEE
Q psy2207         208 SGSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDI---KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLV  282 (305)
Q Consensus       208 ~~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d~---~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~  282 (305)
                      ...++.|++.++.  .+.|+.|||+|-+..|.|++.....   .-.+.|+|.++.|...+.....++.|.|..+..+.|+
T Consensus        26 G~li~~g~~~~~~~~~~~~k~R~~fLF~~~Ll~~k~~~~~~~~~~k~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~~  105 (132)
T d1v61a_          26 GNVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMVVNRLDEIEGSDCMFEITGSTVERIV  105 (132)
T ss_dssp             CCCSCEEEEEBCCSSSSCCCEEEEEECSSCEEEEECSSSSSCCEEEEEECTTTCBCSTTCSSSSSCCCEEEECSSSCEEE
T ss_pred             cCEEEEEEEEEEEecCCCcceEEEEEeCCEEEEEEEcCCCceeEEeeecchhhccccccccccCccceEEEeCCCCCEEE
Confidence            3467899998887  7789999999999999898864332   2357788888888755555567799999876667799


Q ss_pred             EEcCCHHHHHHHHHHHHHHHc
Q psy2207         283 FGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       283 f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      |.|+|++++++||++|+++++
T Consensus       106 l~a~s~eek~~Wv~~L~~~i~  126 (132)
T d1v61a_         106 VHCNNNQDFQEWMEQLNRLTK  126 (132)
T ss_dssp             ECCCCSHHHHHHHHHHHHHHT
T ss_pred             EEcCCHHHHHHHHHHHHHHHh
Confidence            999999999999999998864

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.62  E-value=3.7e-08  Score=72.42  Aligned_cols=47  Identities=13%  Similarity=0.334  Sum_probs=43.2

Q ss_pred             ecCCCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHHh
Q psy2207           4 CLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQ   50 (305)
Q Consensus         4 ~~~~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~   50 (305)
                      ..++.+.++|+|.|.++.++|.|+|+|++||.+|+++|++|+.+..+
T Consensus        61 ~~~d~~~~~n~f~i~~~~~~~~~~a~s~~eK~~W~~~l~~a~~~~~~  107 (109)
T d1zc3b1          61 NVKDNPPMKDMFKLLMFPESRIFQAENAKIKREWLEVLEETKRALSD  107 (109)
T ss_dssp             EECCBTTBSSEEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeecccccceEEEEccCCCEEEEEECCHHHHHHHHHHHHHHHHHHHh
Confidence            45678889999999999999999999999999999999999988654

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.56  E-value=4e-07  Score=71.60  Aligned_cols=93  Identities=20%  Similarity=0.205  Sum_probs=70.6

Q ss_pred             Cceeeeeeecc--CCCceEEEEEEECCEEEEEccCcc----CccceEEEecCeEEEEccccC------CcceeEEEEeC-
Q psy2207         210 SQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASED----IKALLSIPVLGYELEALNEQD------NFKYVFQLKHQ-  276 (305)
Q Consensus       210 ~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d----~~p~~~i~L~~~~v~~~~~~~------~~~~~F~l~~~-  276 (305)
                      .++.|+|.+.+  ...|+.||++|=+..|.+++....    ....+.|+|..+.+...++.+      ..+++|.|... 
T Consensus        27 Li~eG~L~~~~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~y~~k~~i~L~~~~v~~~~~~~~~~~~~~~~~~f~i~~~~  106 (162)
T d2dfka2          27 LIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKE  106 (162)
T ss_dssp             EEEEEEEEEESSTTCCCEEEEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEECSSSCCEESSEEEEEESS
T ss_pred             EEEEEEEEEEEcCCCCceeEEEEEeCCeEEEEEecCCCCCceEEccccchhhceeeecccccccccCccccceEEEEECC
Confidence            47899999876  567999999998888888865332    344677888888877543221      23478999864 


Q ss_pred             CceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         277 GQDPLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       277 ~~~~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      ....|.|.|+|+++...||++|+.+.
T Consensus       107 ~~~~~~~~A~s~~eK~~W~~~l~~~~  132 (162)
T d2dfka2         107 TEEVHLFFAKKLEEKIRWLRAFREER  132 (162)
T ss_dssp             SSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCHHHHHHHHHHHHHHH
Confidence            34579999999999999999998764

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.51  E-value=8.1e-07  Score=64.93  Aligned_cols=92  Identities=14%  Similarity=0.175  Sum_probs=67.5

Q ss_pred             ceeeeeeecc---CCCceEEEEEEECCEEEEEcc-Cc---cCccceEEEecCeEEEEccccCCcceeEEEEeCCceeEEE
Q psy2207         211 QHSGWLHKKS---GRNWKRYWFVLKDQVMYKYKA-SE---DIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVF  283 (305)
Q Consensus       211 ~~~G~L~~~~---~~~wkrrw~vL~~~~L~~y~~-~~---d~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~~~~~f  283 (305)
                      ++.|.|.+..   .+.-+++++.|=...|.+.+. ..   .......|+|..+.|...++.....++|.|.... ..|.|
T Consensus         5 i~eG~l~~~~~~~~k~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~l~~~~v~~~~d~~~~~n~f~i~~~~-~~~~~   83 (109)
T d1zc3b1           5 VYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVKDNPPMKDMFKLLMFP-ESRIF   83 (109)
T ss_dssp             EEEEEEEEEETTTCCEEEEEEEEEESSEEEEEEEECCTTSCEEEEEEEETTTCEEEEECCBTTBSSEEEEEETT-EEEEE
T ss_pred             EEeeeEEEEccCCCCcceeEEEEEecCEEEEEEEcCCcceEEEeeeEEeccceEEEEeecccccceEEEEccCC-CEEEE
Confidence            5788887765   333456777776665555543 22   1334677899988887655556677999999766 46999


Q ss_pred             EcCCHHHHHHHHHHHHHHHc
Q psy2207         284 GADNEQSYERWMKAMREATT  303 (305)
Q Consensus       284 ~a~s~e~~~~Wi~al~~a~~  303 (305)
                      .|+|.++..+|+++|++|..
T Consensus        84 ~a~s~~eK~~W~~~l~~a~~  103 (109)
T d1zc3b1          84 QAENAKIKREWLEVLEETKR  103 (109)
T ss_dssp             ECSSHHHHHHHHHHHHHHHH
T ss_pred             EECCHHHHHHHHHHHHHHHH
Confidence            99999999999999998864

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.2e-07  Score=68.37  Aligned_cols=45  Identities=24%  Similarity=0.380  Sum_probs=39.6

Q ss_pred             eecCCCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207           3 VCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus         3 v~~~~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      |....+.+.+|+|+|.++.|+|.|+|+|++|+++||++|+.+|..
T Consensus        55 v~~~~~~~~~~~F~i~~~~r~~~l~a~s~~~~~~Wi~ai~~~i~~   99 (100)
T d1faoa_          55 VQFDYSQERVNCFCLVFPFRTFYLCAKTGVEADEWIKILRWKLSQ   99 (100)
T ss_dssp             EEEECSSSSSSEEEEEETTEEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred             EEeccccccccccccccCCeEEEEEeCCHHHHHHHHHHHHHHHhh
Confidence            344556678899999999999999999999999999999999863

>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=1.3e-06  Score=66.22  Aligned_cols=91  Identities=14%  Similarity=0.238  Sum_probs=70.5

Q ss_pred             CceeeeeeeccCCCceEEEEEEECCEEEEEccCccCc-----------cceEEEecCeEEEEccccCCcceeEEEEeCCc
Q psy2207         210 SQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIK-----------ALLSIPVLGYELEALNEQDNFKYVFQLKHQGQ  278 (305)
Q Consensus       210 ~~~~G~L~~~~~~~wkrrw~vL~~~~L~~y~~~~d~~-----------p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~  278 (305)
                      .++.|.|.+.+.  -+.||+.|=+..|.+.+...+..           -.+.|+|..+.|....+....+++|.|..+..
T Consensus        27 li~eG~l~~~~~--~k~r~~fLF~d~Li~~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~  104 (133)
T d1dbha2          27 FIMEGTLTRVGA--KHERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDE  104 (133)
T ss_dssp             EEEEEEEEETTC--SSCEEEEEESSEEEEEEECTTCCCCTTSCCCSEEEEEEEESCSCEEEECCCSSSCCSEEEECCTTS
T ss_pred             EEEEeEEEEecC--CCeEEEEEecCeEEEEEecccccccccCCCccEEEEeeeecccccccccCCCcccccceeEEcCCC
Confidence            468899988752  25788888888888877443221           23678999999976655566779999988777


Q ss_pred             eeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         279 DPLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       279 ~~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      ..|.|.|+|+++...|+++|.++.
T Consensus       105 ~~~~l~a~s~~eK~~W~~~l~~~~  128 (133)
T d1dbha2         105 NSVIFSAKSAEEKNNWMAALISLQ  128 (133)
T ss_dssp             CCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cEEEEEECCHHHHHHHHHHHHHHH
Confidence            779999999999999999998764

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=4.9e-07  Score=65.15  Aligned_cols=41  Identities=15%  Similarity=0.253  Sum_probs=36.7

Q ss_pred             eecCCCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHH
Q psy2207           3 VCLPQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQT   43 (305)
Q Consensus         3 v~~~~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~   43 (305)
                      |..++....+++|+|.+++|+|.|+|+|++|+++||++|++
T Consensus        61 ~~~~~~~~~~~~f~i~t~~r~~~l~A~s~~e~~~Wi~al~~  101 (103)
T d1qqga1          61 INKRADSKNKHLVALYTRDEHFAIAADSEAEQDSWYQALLQ  101 (103)
T ss_dssp             EEEECCSSCSSEEEEEESSCEEEEECSSHHHHHHHHHHHHH
T ss_pred             EeecccCCCceEEEEEeCCeEEEEEcCCHHHHHHHHHHHHh
Confidence            44556677889999999999999999999999999999986

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.28  E-value=5.7e-06  Score=61.23  Aligned_cols=90  Identities=12%  Similarity=0.167  Sum_probs=59.5

Q ss_pred             eee-eeeeccCCCc-eEEEEEEE-CCEEEEEccCcc--CccceEEEecCeEEE-Ecccc---------CCcceeEEEEe-
Q psy2207         212 HSG-WLHKKSGRNW-KRYWFVLK-DQVMYKYKASED--IKALLSIPVLGYELE-ALNEQ---------DNFKYVFQLKH-  275 (305)
Q Consensus       212 ~~G-~L~~~~~~~w-krrw~vL~-~~~L~~y~~~~d--~~p~~~i~L~~~~v~-~~~~~---------~~~~~~F~l~~-  275 (305)
                      ..| +|.|-..+.| ++|||.|. +..+.+|.+..+  ..+.+.|+|..+.-+ .....         .....+|.|++ 
T Consensus        12 ~~G~~l~K~~~~~~~k~R~f~L~~d~~~i~~~~~~~~~~~~~~~i~i~~I~~V~~G~~s~~~~~~~~~~~~~~~FsIv~~   91 (119)
T d1maia_          12 LKGSQLLKVKSSSWRRERFYKLQEDCKTIWQESRKVMRSPESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFK   91 (119)
T ss_dssp             HHCEEEEEESSSSCEEEEEEEECTTSSEEEECCCCTTCCTTTTEEEGGGEEEEEESSCSHHHHHHCTTSCGGGEEEEEES
T ss_pred             HcCCeEEEeCCCCCCEEEEEEEcCCCCEEEEeCCCCCCCccceEEEHHHceEEEcCCCCchhhhcccCCCcCceEEEEEc
Confidence            445 5555554455 66999995 444446654433  345789999764433 32211         12347899986 


Q ss_pred             CCceeEEEEcCCHHHHHHHHHHHHHH
Q psy2207         276 QGQDPLVFGADNEQSYERWMKAMREA  301 (305)
Q Consensus       276 ~~~~~~~f~a~s~e~~~~Wi~al~~a  301 (305)
                      ++.+++.|.|+|+++++.|+.+|+.-
T Consensus        92 ~~~r~l~l~a~s~~~~~~Wv~~L~~L  117 (119)
T d1maia_          92 DQRNTLDLIAPSPADAQHWVQGLRKI  117 (119)
T ss_dssp             SSCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEECCHHHHHHHHHHHHHH
Confidence            44478999999999999999999764

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.9e-06  Score=61.31  Aligned_cols=39  Identities=23%  Similarity=0.374  Sum_probs=35.5

Q ss_pred             CCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207           7 QTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAI   45 (305)
Q Consensus         7 ~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai   45 (305)
                      ...+.++.|.|.++.|+|.|.|+|++|+++||++|+.|.
T Consensus        60 ~~~~~~~~F~i~~~~r~~~l~A~s~~e~~~Wi~aL~~Aa   98 (99)
T d2coca1          60 ERLDSGHVWKLQWAKQSWYLSASSAELQQQWLETLSTAA   98 (99)
T ss_dssp             SCCSSSEEEEEEETTEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             cccCCceEEEEEcCCcEEEEECCCHHHHHHHHHHHHHhc
Confidence            345678899999999999999999999999999999875

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=6.6e-06  Score=63.28  Aligned_cols=47  Identities=21%  Similarity=0.240  Sum_probs=39.6

Q ss_pred             eecCCCcCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy2207           3 VCLPQTEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAIKENE   49 (305)
Q Consensus         3 v~~~~~~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ai~~~~   49 (305)
                      +....+...+|+|.|.+++ |+|.|.|++++|+++||++|+.++....
T Consensus        80 ~~~~~~~~~~~~F~i~~~~~~~~~l~A~s~~e~~~Wi~aL~~~i~~~~  127 (150)
T d1wg7a_          80 GVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKILQLNF  127 (150)
T ss_dssp             EECCCCSSCTTEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCccccceEEEEEcCCCeEEEEEeCCHHHHHHHHHHHHHHHHhhh
Confidence            3445566778999999875 7999999999999999999999987644

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=4e-06  Score=60.34  Aligned_cols=42  Identities=21%  Similarity=0.447  Sum_probs=37.0

Q ss_pred             CCcCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy2207           7 QTEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAIKEN   48 (305)
Q Consensus         7 ~~~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ai~~~   48 (305)
                      +....+|+|.|.+++ +++.|+|+|++|+++||++|+.+|++.
T Consensus        63 ~~~~~~~~f~i~~~~~~~~~f~a~s~~e~~~W~~ai~~~i~~l  105 (106)
T d1u5da1          63 RDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFLLKDL  105 (106)
T ss_dssp             SSGGGGGEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCceeEEEEcCCCcEEEEEeCCHHHHHHHHHHHHHHHHHc
Confidence            445678999999975 799999999999999999999999763

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=3.9e-06  Score=63.42  Aligned_cols=47  Identities=15%  Similarity=0.295  Sum_probs=39.5

Q ss_pred             Ceeec-CCCcCCCceEEEEEe-ceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207           1 MKVCL-PQTEDYNNEFSVIAI-SRSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus         1 m~v~~-~~~~~~~~~f~i~~~-~ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      |.|.. ++++..+|.|.|.++ .++|.|+|+|++||++||++|+++|..
T Consensus        79 ~~v~~~~~~~~~~~~f~i~~~~~~~~~l~a~s~eek~~Wv~~L~~~i~~  127 (132)
T d1v61a_          79 MVVNRLDEIEGSDCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLTKS  127 (132)
T ss_dssp             CBCSTTCSSSSSCCCEEEECSSSCEEEECCCCSHHHHHHHHHHHHHHTT
T ss_pred             ccccccccccCccceEEEeCCCCCEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            45554 455678899999987 589999999999999999999998853

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=3.9e-06  Score=66.18  Aligned_cols=39  Identities=18%  Similarity=0.359  Sum_probs=36.0

Q ss_pred             CCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKEN   48 (305)
Q Consensus        10 ~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~   48 (305)
                      ...+.|+|.++.|+|.|+|+|++|+++||++|+++|...
T Consensus        96 ~~~~~F~I~t~~rt~~l~A~s~eE~~~WI~aL~~~i~~~  134 (169)
T d1btka_          96 RFPYPFQVVYDEGPLYVFSPTEELRKRWIHQLKNVIRYN  134 (169)
T ss_dssp             CCCEEEEEEETTCCEEEEESCHHHHHHHHHHHHHHHTTC
T ss_pred             ccCcceEEEeCCcEEEEECCCHHHHHHHHHHHHHHHHhC
Confidence            456899999999999999999999999999999999763

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=1e-05  Score=57.11  Aligned_cols=44  Identities=18%  Similarity=0.268  Sum_probs=37.3

Q ss_pred             eeecCCCcCCCceEEEEEe-ceEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207           2 KVCLPQTEDYNNEFSVIAI-SRSFTLRARSANERLEWIDAIQTAI   45 (305)
Q Consensus         2 ~v~~~~~~~~~~~f~i~~~-~ksf~~~a~s~~ek~~W~~~i~~ai   45 (305)
                      .|...++.+.++.|.|.++ .|+|.|.|+|++|+++||.+||.+.
T Consensus        49 ~v~~~~~~~~~~~f~~~~~~~~~~~l~A~s~~e~~~Wi~~L~~~t   93 (95)
T d2cofa1          49 EVVPDPSPDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSES   93 (95)
T ss_dssp             EEECCCBTTBSCEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHS
T ss_pred             EEEecccccceecceeccccceeEEeeCCCHHHHHHHHHHHHHHh
Confidence            3555667788899999875 6899999999999999999999763

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=5.7e-06  Score=59.30  Aligned_cols=39  Identities=31%  Similarity=0.652  Sum_probs=36.0

Q ss_pred             CCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKEN   48 (305)
Q Consensus        10 ~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~   48 (305)
                      ..+|.|.|.++.|+|.|+|+|++|+++|+++|+.++...
T Consensus        56 ~~~~~f~i~~~~~~~~l~a~s~~e~~~Wi~ai~~~i~~~   94 (102)
T d2coda1          56 QGDNKFEVVTTQRTFVFRVEKEEERNDWISILLNALKSQ   94 (102)
T ss_dssp             ETTTEEEEEESSCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred             ccceeEEEEcCCcEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence            457899999999999999999999999999999998764

>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=6.5e-06  Score=62.70  Aligned_cols=42  Identities=14%  Similarity=0.411  Sum_probs=36.2

Q ss_pred             CCCcCCCceEEEEE-----eceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207           6 PQTEDYNNEFSVIA-----ISRSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus         6 ~~~~~~~~~f~i~~-----~~ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      .+.++.+|+|.|..     +.++|.|+|+|++||++|+++|++||++
T Consensus        93 ~~~~~~~~~f~li~~~~~~~~~~~~l~A~s~~eK~~Wi~~i~~aI~n  139 (140)
T d1xcga2          93 RSVATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN  139 (140)
T ss_dssp             EECSSCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCCCeEEEEEcCCCCCceEEEEEcCCHHHHHHHHHHHHHHHHc
Confidence            34556689999976     4679999999999999999999999976

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=6.1e-06  Score=62.13  Aligned_cols=41  Identities=20%  Similarity=0.334  Sum_probs=36.7

Q ss_pred             CCCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207           6 PQTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus         6 ~~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      ++....+|+|.|.++.++|.|+|+|++|+++||++|+.++.
T Consensus        69 ~~~~~r~~~F~i~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~  109 (133)
T d2j59m1          69 YSETKRKNVFRLTTSDCECLFQAEDRDDMLAWIKTIQESSN  109 (133)
T ss_dssp             SSSCSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred             ccccccCceeEEecCCCEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            34466789999999999999999999999999999998764

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=9.1e-06  Score=57.93  Aligned_cols=39  Identities=33%  Similarity=0.516  Sum_probs=36.3

Q ss_pred             cCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207           9 EDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus         9 ~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      ....+.|.|.++.++|.|.|+|++|+++|+++|+.||..
T Consensus        63 ~~~~~~f~i~~~~~~~~~~a~s~~e~~~W~~aI~~ai~~  101 (103)
T d1eaza_          63 MMRDNLFEIVTTSRTFYVQADSPEEMHSWIKAVSGAIVA  101 (103)
T ss_dssp             HTCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             cccceEEEEEeCCEEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence            466789999999999999999999999999999999875

>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=6.8e-06  Score=62.77  Aligned_cols=45  Identities=31%  Similarity=0.466  Sum_probs=37.2

Q ss_pred             CCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHHhc
Q psy2207           7 QTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQH   51 (305)
Q Consensus         7 ~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~~   51 (305)
                      +.....+.|.+.++.++|.|+|+|++||..|+++|++|+++..+.
T Consensus        93 d~~~~~~~~~~~~~~~~~~l~a~s~~ek~~W~~~I~~Ai~~~~e~  137 (142)
T d1ki1b2          93 DPSGDEPIFHISHIDRVYTLRAESINERTAWVQKIKAASELYIET  137 (142)
T ss_dssp             SSCCC---CEEEETTEEEECBCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccceeEEEecCCCEEEEEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence            344567899999999999999999999999999999999987654

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=2.7e-06  Score=61.06  Aligned_cols=42  Identities=29%  Similarity=0.407  Sum_probs=35.8

Q ss_pred             eecCCCcCCCceEEEEEec--eEEEEEeCCHHHHHHHHHHHHHH
Q psy2207           3 VCLPQTEDYNNEFSVIAIS--RSFTLRARSANERLEWIDAIQTA   44 (305)
Q Consensus         3 v~~~~~~~~~~~f~i~~~~--ksf~~~a~s~~ek~~W~~~i~~a   44 (305)
                      |...++...+++|.|.++.  |+|.|+|+|++|+++||++|+.+
T Consensus        57 v~~~~~~~~~~~f~i~~~~~~~~~~l~A~s~~e~~~Wi~al~~v  100 (101)
T d2elba2          57 VMAVDCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNI  100 (101)
T ss_dssp             CCCCCCCCSSSSSEECCCSSSCCCCEECSSHHHHHHHHHHHHHT
T ss_pred             cccccccCCcceEEEEeecccceEEEECCCHHHHHHHHHHHHhc
Confidence            4555667778999998855  89999999999999999999864

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=4.8e-06  Score=63.15  Aligned_cols=40  Identities=15%  Similarity=0.365  Sum_probs=35.5

Q ss_pred             CcCCCceEEEEEece-EEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207           8 TEDYNNEFSVIAISR-SFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus         8 ~~~~~~~f~i~~~~k-sf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      ..+.+|+|.|.++++ .|.|+|+|++|+++||++|+.+|..
T Consensus        91 ~~~~~~~F~l~t~~~~~y~f~A~s~~e~~~Wv~ai~~ai~~  131 (136)
T d1v5ma_          91 MPEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGCVDS  131 (136)
T ss_dssp             SCCCTTEECCBCTTSCBEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            345689999999986 5889999999999999999999975

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=1.1e-05  Score=61.16  Aligned_cols=41  Identities=20%  Similarity=0.306  Sum_probs=36.8

Q ss_pred             CCcCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207           7 QTEDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus         7 ~~~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      +..+.++.|.|.++.++|.|+|+|++|+++|+++|+.++..
T Consensus        67 ~~~~~~~~F~i~~~~~~~~f~Aes~~e~~~Wi~~I~~v~~~  107 (136)
T d1x1fa1          67 STEKNCAKFTLVLPKEEVQLKTENTESGEEWRGFILTVTEL  107 (136)
T ss_dssp             CTTSCCCEEEEECSSCCEEEECSSHHHHHHHHHHHHHHHHS
T ss_pred             ccccccceeeecCCCceEEEEeCCHHHHHHHHHHHHHHHhc
Confidence            34567899999999999999999999999999999998863

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=1.4e-05  Score=59.35  Aligned_cols=39  Identities=15%  Similarity=0.337  Sum_probs=34.6

Q ss_pred             cCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207           9 EDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus         9 ~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      ....+.|.|.++.|+|.|.|+|++|+++||++|++|+..
T Consensus        73 ~~~~~~~~i~~~~r~~~f~A~s~~e~~~Wv~al~~a~~~  111 (126)
T d1wi1a_          73 EGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATGQ  111 (126)
T ss_dssp             CSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             cccceeEEeccCCeEEEEEECCHHHHHHHHHHHHHHHHh
Confidence            345567899999999999999999999999999998853

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.77  E-value=1.1e-05  Score=60.00  Aligned_cols=38  Identities=24%  Similarity=0.432  Sum_probs=34.4

Q ss_pred             cCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207           9 EDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus         9 ~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      ....+.|.|.++.|.|.|+|+|++|+++||++|++|+.
T Consensus        83 ~~~~~~~~~~~~~r~~~l~Aes~~e~~~Wi~aL~~A~~  120 (126)
T d1v5pa_          83 PKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQASK  120 (126)
T ss_dssp             CSCSSEEEEECSSCEEEEECSSHHHHHHHHHHHHHTTT
T ss_pred             ccccceEEEcCCCeeEEEECCCHHHHHHHHHHHHHHhc
Confidence            35568999999999999999999999999999998864

>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=1.2e-05  Score=60.56  Aligned_cols=45  Identities=24%  Similarity=0.494  Sum_probs=37.5

Q ss_pred             Ceee-cCCCcCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207           1 MKVC-LPQTEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAI   45 (305)
Q Consensus         1 m~v~-~~~~~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ai   45 (305)
                      |+|. .++++..+|+|.|.++. ++|.|+|+|++||++|+++|+.+.
T Consensus        82 ~~v~~~~~~~~~~~~f~i~~~~~~~~~l~a~s~~eK~~W~~~l~~~~  128 (133)
T d1dbha2          82 VQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQ  128 (133)
T ss_dssp             CEEEECCCSSSCCSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCcccccceeEEcCCCcEEEEEECCHHHHHHHHHHHHHHH
Confidence            4564 56777889999999864 589999999999999999998643

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.75  E-value=1.5e-05  Score=56.80  Aligned_cols=39  Identities=23%  Similarity=0.324  Sum_probs=34.2

Q ss_pred             CcCCCceEEEEEec---eEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207           8 TEDYNNEFSVIAIS---RSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus         8 ~~~~~~~f~i~~~~---ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      ....++.|.|.++.   ++|.|+|+|++|+++||.+|++++.
T Consensus        58 ~~~~~~~f~i~~~~~~~~~~~~~a~s~~e~~~Wi~ai~~~~~   99 (101)
T d2fjla1          58 KNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQ   99 (101)
T ss_dssp             SSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHT
T ss_pred             cccccceeEEeccccccEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            34577899999864   7899999999999999999999875

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=97.74  E-value=2.6e-05  Score=57.43  Aligned_cols=42  Identities=14%  Similarity=0.312  Sum_probs=36.7

Q ss_pred             CCCcCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207           6 PQTEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus         6 ~~~~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      ++....+|.|.|.+.+ ++|.|.|+|++|+++||++|+.||..
T Consensus        76 ~~~~~~~~~f~i~~~~~~~~~l~a~s~~e~~~Wi~aI~~a~~~  118 (123)
T d1wjma_          76 FDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIAS  118 (123)
T ss_dssp             TTCSSCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCcEEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            4455678999999865 78999999999999999999999975

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=3.5e-05  Score=55.52  Aligned_cols=41  Identities=20%  Similarity=0.368  Sum_probs=35.1

Q ss_pred             CCCcCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207           6 PQTEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus         6 ~~~~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      .+....+|+|.|.++. +.|.|.|+|++|+++||++|+.|+.
T Consensus        62 ~~~~~~~~~F~i~~~~~~~~~f~a~s~~~~~~Wi~ai~~a~~  103 (109)
T d1wgqa_          62 KDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTV  103 (109)
T ss_dssp             CCSSCSSSEEEEEETTEEEEEEECSSHHHHHHHHHHHHHHHS
T ss_pred             ccccccceeeeeecccceEEEEECCCHHHHHHHHHHHHHHhc
Confidence            3455678999999875 5788999999999999999999974

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=3e-05  Score=56.57  Aligned_cols=42  Identities=26%  Similarity=0.349  Sum_probs=35.7

Q ss_pred             CCCcCCCceEEEEEec--------eEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207           6 PQTEDYNNEFSVIAIS--------RSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus         6 ~~~~~~~~~f~i~~~~--------ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      ......+|+|+|.++.        ++|.|.|++++|+++||++|++|+..
T Consensus        64 ~~~~~~~~~f~l~~~~~~~~~~~~~~~~~~a~s~ee~~~Wi~aI~~a~~~  113 (118)
T d1v89a_          64 NPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGS  113 (118)
T ss_dssp             CSSCCCCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHHC
T ss_pred             ccccCCCcEEEEecCCCcceecCCcEEEEEcCCHHHHHHHHHHHHHHHcc
Confidence            3455667899998865        78999999999999999999999753

>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=6.2e-05  Score=57.19  Aligned_cols=91  Identities=15%  Similarity=0.180  Sum_probs=59.7

Q ss_pred             CceeeeeeeccCCCceEEEEEEECCEEEEEccCcc-----------------CccceEEEecCeEEEEccccCCcceeEE
Q psy2207         210 SQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASED-----------------IKALLSIPVLGYELEALNEQDNFKYVFQ  272 (305)
Q Consensus       210 ~~~~G~L~~~~~~~wkrrw~vL~~~~L~~y~~~~d-----------------~~p~~~i~L~~~~v~~~~~~~~~~~~F~  272 (305)
                      -+++|.|++..  .-+.+++.|=...|.|-+...+                 ......|+|.+..|....+.....+.|.
T Consensus        25 li~eG~L~k~~--~~k~r~~FLFnD~Ll~tK~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~v~~~~d~~~~~~~~~  102 (142)
T d1ki1b2          25 FLHSGKLYKAK--NNKELYGFLFNDFLLLTQITKPLGSSGTDKVFSPKSNLQYMYKTPIFLNEVLVKLPTDPSGDEPIFH  102 (142)
T ss_dssp             EEEECCCBCSS--SCCCCEEEEESSEEEEEEEECC-------CCSCSSCCEEEECSSCEEGGGEEEECCSSSCCC---CE
T ss_pred             EEEeeEEEEec--CCCEEEEEEecCEEEEEEeccccceeccccccccCCceeEEEEcccchhhheeeccCCcccceeEEE
Confidence            36888887654  2246677675665555432211                 1123457788887775544445567788


Q ss_pred             EEeCCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         273 LKHQGQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       273 l~~~~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      +...+ ..|.|.|+|+++...|+++|++|+.
T Consensus       103 ~~~~~-~~~~l~a~s~~ek~~W~~~I~~Ai~  132 (142)
T d1ki1b2         103 ISHID-RVYTLRAESINERTAWVQKIKAASE  132 (142)
T ss_dssp             EEETT-EEEECBCSSHHHHHHHHHHHHHHHH
T ss_pred             ecCCC-EEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            87654 5799999999999999999999874

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.61  E-value=3.5e-05  Score=56.63  Aligned_cols=43  Identities=19%  Similarity=0.315  Sum_probs=36.5

Q ss_pred             CcCCCceEEEEEe-ceEEEEEeCCHHHHHHHHHHHHHHHHHHHh
Q psy2207           8 TEDYNNEFSVIAI-SRSFTLRARSANERLEWIDAIQTAIKENEQ   50 (305)
Q Consensus         8 ~~~~~~~f~i~~~-~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~   50 (305)
                      ....++.|.|.++ .|+|.|.|+|++|+++|+++|+.|+....+
T Consensus        64 ~~~~~~~f~i~~~~~~~~~f~a~s~~e~~~W~~al~~a~~~~~~  107 (119)
T d1omwa2          64 QIKERKCLLLKIRGGKQFVLQCDSDPELVQWKKELRDAYREAQQ  107 (119)
T ss_dssp             ESSSCEEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccceEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence            3456678988875 589999999999999999999999887554

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=97.60  E-value=3.3e-05  Score=55.23  Aligned_cols=38  Identities=21%  Similarity=0.397  Sum_probs=33.3

Q ss_pred             CCcCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHH
Q psy2207           7 QTEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTA   44 (305)
Q Consensus         7 ~~~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~a   44 (305)
                      +....+|.|.|.+++ ++|.|+|+|++|+++|+++|+.|
T Consensus        68 ~~~~~~~~f~i~~~~~~~~~~~a~s~~e~~~W~~ai~~A  106 (106)
T d1btna_          68 DYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             SCCSSSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred             ccccCcceEeecccCCCEEEEECCCHHHHHHHHHHHHhC
Confidence            345678999999975 79999999999999999999875

>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00078  Score=50.61  Aligned_cols=91  Identities=12%  Similarity=0.105  Sum_probs=58.3

Q ss_pred             Cceeeeeeecc-CCCceEEEEEEECCEEEEEccCccC------------------ccceEEEecCeEEEEccccCCccee
Q psy2207         210 SQHSGWLHKKS-GRNWKRYWFVLKDQVMYKYKASEDI------------------KALLSIPVLGYELEALNEQDNFKYV  270 (305)
Q Consensus       210 ~~~~G~L~~~~-~~~wkrrw~vL~~~~L~~y~~~~d~------------------~p~~~i~L~~~~v~~~~~~~~~~~~  270 (305)
                      -++.|.|..+. .+..+.|++.|=...|.+-+.....                  .....+++....+....   ..+++
T Consensus        25 Li~eG~L~~k~~~~k~k~r~~FLF~D~Ll~tk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~  101 (140)
T d1xcga2          25 MIHEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVA---TDKRA  101 (140)
T ss_dssp             EEEEEEEEECCSSSCCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEECS---SCSSE
T ss_pred             EEEEeeEEEEecCCCceEEEEEEecCeEEEEEecccceeeccccccccccccceeeecceEecceEEEecCC---CCCCe
Confidence            47889997544 5667788888866666665543211                  01123334443333222   23467


Q ss_pred             EEEEeC----CceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         271 FQLKHQ----GQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       271 F~l~~~----~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      |.|...    ....|.|.|+|+++..+|+++|++|+.
T Consensus       102 f~li~~~~~~~~~~~~l~A~s~~eK~~Wi~~i~~aI~  138 (140)
T d1xcga2         102 FFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVR  138 (140)
T ss_dssp             EEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCceEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            888652    235699999999999999999999874

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.57  E-value=3.1e-05  Score=55.97  Aligned_cols=38  Identities=18%  Similarity=0.387  Sum_probs=33.6

Q ss_pred             CcCCCceEEEEEe-ceEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207           8 TEDYNNEFSVIAI-SRSFTLRARSANERLEWIDAIQTAI   45 (305)
Q Consensus         8 ~~~~~~~f~i~~~-~ksf~~~a~s~~ek~~W~~~i~~ai   45 (305)
                      ....+++|.|.++ .|+|.|.|+|++|+++|+++|+.+|
T Consensus        72 ~~~~~~~f~i~~~~~~~~~~~a~s~~e~~~W~~ai~~~i  110 (111)
T d1u5fa1          72 DGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL  110 (111)
T ss_dssp             STTGGGEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             cccccceEEEEccCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence            4457799999996 5799999999999999999999875

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=4e-05  Score=54.35  Aligned_cols=37  Identities=38%  Similarity=0.592  Sum_probs=31.6

Q ss_pred             cCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207           9 EDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAI   45 (305)
Q Consensus         9 ~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ai   45 (305)
                      ....+.|.|.+++ ++|.|.|+|++|+++|+++|+.||
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~a~s~~e~~~W~~ai~~a~  103 (104)
T d2i5fa1          66 SEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS  103 (104)
T ss_dssp             --CCSEEEEECTTCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ccCccEEEEECCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence            4567899998766 689999999999999999999987

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.56  E-value=2.5e-05  Score=56.92  Aligned_cols=38  Identities=24%  Similarity=0.446  Sum_probs=34.1

Q ss_pred             cCCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207           9 EDYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus         9 ~~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      ....+.|.+.++.|+|.|.|+|++|+++||.+|+.||.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~a~s~~e~~~Wv~~l~~ai~  111 (117)
T d1v5ua_          74 VDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLS  111 (117)
T ss_dssp             SCTTTCEEEEESSCEEEEECSSHHHHHHHHHHHHTTCC
T ss_pred             cccceEEEeeCCCcEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            34557899999999999999999999999999998874

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=6.3e-05  Score=54.65  Aligned_cols=44  Identities=25%  Similarity=0.349  Sum_probs=36.4

Q ss_pred             CCcCCCceEEEEEec----eEEEEEeCCHHHHHHHHHHHHHHHHHHHh
Q psy2207           7 QTEDYNNEFSVIAIS----RSFTLRARSANERLEWIDAIQTAIKENEQ   50 (305)
Q Consensus         7 ~~~~~~~~f~i~~~~----ksf~~~a~s~~ek~~W~~~i~~ai~~~~~   50 (305)
                      +....+++|.|....    +.+.|+|+|++|+++||++|+.++.....
T Consensus        66 ~~~~~~~~f~i~~~~~~~~~~~~f~a~s~~e~~~Wi~ai~~~~~~~~~  113 (118)
T d1unqa_          66 TERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLKK  113 (118)
T ss_dssp             ECSSSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCceEEEEeccccceeEEEEEeCCHHHHHHHHHHHHHHHHHhhc
Confidence            345678899998644    56899999999999999999999987554

>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=97.52  E-value=0.00068  Score=49.19  Aligned_cols=90  Identities=12%  Similarity=0.106  Sum_probs=55.6

Q ss_pred             ceeeeeeecc-CCCceEEEEEEECCEEEEEccCcc------------------CccceEEEecCeEEEEccccCCcceeE
Q psy2207         211 QHSGWLHKKS-GRNWKRYWFVLKDQVMYKYKASED------------------IKALLSIPVLGYELEALNEQDNFKYVF  271 (305)
Q Consensus       211 ~~~G~L~~~~-~~~wkrrw~vL~~~~L~~y~~~~d------------------~~p~~~i~L~~~~v~~~~~~~~~~~~F  271 (305)
                      ++.|-|..+. .+.-+.|++.|=+..|.+-+...+                  ..-...|+|....|.....  +.+..|
T Consensus         2 i~eG~L~~~~~~~k~~er~vFLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~v~e~~~--d~~~~f   79 (114)
T d1txda2           2 IHEGPLVWKVNRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQVAT--DNKALF   79 (114)
T ss_dssp             EEEEEEEEESSSSCBCCEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEEEEECCC---CCEEE
T ss_pred             ceeeeEEEEecCCCceEEEEEEecCeEEEEEecccccccccccccccccccceeeecCcEEcccEEEEEcCC--CCCCEE
Confidence            4678886443 333456666665555544443221                  1112356677666654322  334578


Q ss_pred             EEEeCC--ceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         272 QLKHQG--QDPLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       272 ~l~~~~--~~~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      .|.+.+  ...|.|.|.|+++.+.||++|++++
T Consensus        80 li~~~~~~~~~y~l~A~s~~eK~~W~~~I~~~~  112 (114)
T d1txda2          80 VISMSDNGAQIYELVAQTVSEKTVWQDLICRMA  112 (114)
T ss_dssp             EEEECSSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence            877643  3479999999999999999999886

>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.00073  Score=49.41  Aligned_cols=92  Identities=13%  Similarity=0.081  Sum_probs=61.0

Q ss_pred             Cceeeeeeecc----CCCceEEEEEEECCEEEEEccCcc------CccceEEEecCeEEEEccccCCcceeEEEEe----
Q psy2207         210 SQHSGWLHKKS----GRNWKRYWFVLKDQVMYKYKASED------IKALLSIPVLGYELEALNEQDNFKYVFQLKH----  275 (305)
Q Consensus       210 ~~~~G~L~~~~----~~~wkrrw~vL~~~~L~~y~~~~d------~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~----  275 (305)
                      .++.|.|....    .+..+.|++.|=+..|.+-+....      ......+++..+.+....  ++.++.|.|..    
T Consensus        13 Ll~~g~l~v~~~~~~~~k~~~R~~FLF~d~Ll~~K~k~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~f~i~~~~~~   90 (121)
T d1ntya2          13 LILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHV--EGDPCKFALWVGRTP   90 (121)
T ss_dssp             EEEEEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEECTTCCEEEEEEEEEEGGGEEEECCC--TTCTTEEEEEESSSC
T ss_pred             EEEEeEEEEEcccccCCCCcEEEEEeeCCeEEEEEEecCCCCCceeEEEeeEEecceEEEEcC--CCCCceEEEEEecCC
Confidence            46788887433    455778888886666666543211      122344666666655332  34457888864    


Q ss_pred             CCceeEEEEcCCHHHHHHHHHHHHHHHc
Q psy2207         276 QGQDPLVFGADNEQSYERWMKAMREATT  303 (305)
Q Consensus       276 ~~~~~~~f~a~s~e~~~~Wi~al~~a~~  303 (305)
                      .+...|.|.|.|+++.++||++|+++..
T Consensus        91 ~~~~~~~l~a~s~~eK~~W~~~I~~~i~  118 (121)
T d1ntya2          91 TSDNKIVLKASSIENKQDWIKHIREVIQ  118 (121)
T ss_dssp             CTTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCHHHHHHHHHHHHHHHH
Confidence            2344699999999999999999998863

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=6.1e-05  Score=53.71  Aligned_cols=40  Identities=18%  Similarity=0.268  Sum_probs=34.4

Q ss_pred             CCCcCCCceEEEEEe-ceEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207           6 PQTEDYNNEFSVIAI-SRSFTLRARSANERLEWIDAIQTAI   45 (305)
Q Consensus         6 ~~~~~~~~~f~i~~~-~ksf~~~a~s~~ek~~W~~~i~~ai   45 (305)
                      ..+...++.|.|.++ .|+|.|.|+|++|+++|+++|+.|.
T Consensus        66 ~~~~~~~~~~~i~~~~~~~~~~~a~s~~e~~~Wi~al~~A~  106 (107)
T d1upqa_          66 GAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRAS  106 (107)
T ss_dssp             SCTTSSSSEEEEECTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CcccCcceEEEEEcCCCeEEEEEcCCHHHHHHHHHHHHHHh
Confidence            345567789999987 5799999999999999999999875

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.46  E-value=8.8e-05  Score=57.63  Aligned_cols=41  Identities=17%  Similarity=0.315  Sum_probs=34.5

Q ss_pred             cCCCceEEEEEe--ceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy2207           9 EDYNNEFSVIAI--SRSFTLRARSANERLEWIDAIQTAIKENE   49 (305)
Q Consensus         9 ~~~~~~f~i~~~--~ksf~~~a~s~~ek~~W~~~i~~ai~~~~   49 (305)
                      ..++|+|.|..+  .++|.|+|+|++||..||++|++++....
T Consensus        94 ~~~~~~f~i~~~~~~~~~~~~A~s~~eK~~W~~~l~~~~~~~~  136 (162)
T d2dfka2          94 VSMKNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKMVQ  136 (162)
T ss_dssp             CEESSEEEEEESSSSCEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccceEEEEECCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence            346799999864  67899999999999999999999876543

>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=5.4e-05  Score=55.84  Aligned_cols=39  Identities=26%  Similarity=0.480  Sum_probs=34.0

Q ss_pred             cCCCceEEEEE-----eceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207           9 EDYNNEFSVIA-----ISRSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus         9 ~~~~~~f~i~~-----~~ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      +..++.|.|..     +.+.|.|+|+|++||+.||++|+++|.+
T Consensus        76 ~~~~~~f~i~~~~~~~~~~~~~l~a~s~~eK~~W~~~I~~~i~e  119 (121)
T d1ntya2          76 EGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQE  119 (121)
T ss_dssp             TTCTTEEEEEESSSCCTTTCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCceEEEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            45678999964     6678999999999999999999999986

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=4.6e-05  Score=58.40  Aligned_cols=40  Identities=23%  Similarity=0.299  Sum_probs=34.6

Q ss_pred             CCCceEEEEEeceEEEEEeCCHHHHHHHHHHHHHHHHHHHh
Q psy2207          10 DYNNEFSVIAISRSFTLRARSANERLEWIDAIQTAIKENEQ   50 (305)
Q Consensus        10 ~~~~~f~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~   50 (305)
                      ..+++|.|.++.|+|.|.|++ .|+++||++|++++....+
T Consensus       100 ~~~~~F~I~t~~Rty~l~a~~-~d~~~Wv~aI~~v~~~~~~  139 (147)
T d1w1ha_         100 KNFKTFFVHTPNRTYYLMDPS-GNAHKWCRKIQEVWRQRYQ  139 (147)
T ss_dssp             EETTEEEEECSSCEEEEECTT-SCHHHHHHHHHHHHHHHHC
T ss_pred             ccCceEEEecCceEEEEEcCh-HHHHHHHHHHHHHHHHHhh
Confidence            456899999999999999865 6899999999999887554

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.42  E-value=8.1e-05  Score=54.63  Aligned_cols=41  Identities=15%  Similarity=0.289  Sum_probs=36.0

Q ss_pred             CCCcCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207           6 PQTEDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus         6 ~~~~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      ++....+|.|.|.++. +.|.|+|+|++|+++||++|+.+++
T Consensus        78 ~~~~~~~~~~~l~~~~~~~~~f~a~s~~d~~~Wv~al~~~~~  119 (122)
T d1droa_          78 SDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSD  119 (122)
T ss_dssp             CSSSSSTTEEEEECSSSCEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred             cccccccceEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHh
Confidence            3455778999999987 7899999999999999999998875

>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.39  E-value=6.5e-05  Score=57.55  Aligned_cols=40  Identities=18%  Similarity=0.434  Sum_probs=32.8

Q ss_pred             CceEEE--EEeceEEEEEeCCHHHHHHHHHHHHHHHHHHHhc
Q psy2207          12 NNEFSV--IAISRSFTLRARSANERLEWIDAIQTAIKENEQH   51 (305)
Q Consensus        12 ~~~f~i--~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~~~   51 (305)
                      .+.|.|  .++..+|.|+|.|++||+.|+++|++++.+..+.
T Consensus        92 ~~~f~~~~~~~~~~~~l~a~s~eeK~~W~~~I~~~l~~q~~~  133 (147)
T d1kz7a2          92 TKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVLTSQLQA  133 (147)
T ss_dssp             TTEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcEEEEEeCCHHHHHHHHHHHHHHHHHHHHH
Confidence            344554  4588899999999999999999999999876543

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=4.2e-05  Score=55.61  Aligned_cols=37  Identities=16%  Similarity=0.362  Sum_probs=32.4

Q ss_pred             cCCCceEEEEEeceEEEEEe-----------CCHHHHHHHHHHHHHHH
Q psy2207           9 EDYNNEFSVIAISRSFTLRA-----------RSANERLEWIDAIQTAI   45 (305)
Q Consensus         9 ~~~~~~f~i~~~~ksf~~~a-----------~s~~ek~~W~~~i~~ai   45 (305)
                      ...+++|+|.+++|+|.|.|           ++++++++|+++|++|+
T Consensus        64 ~~~~~~F~I~T~~rtyy~~~~~~~~~~~~s~~~~~~~~~W~~aI~~A~  111 (112)
T d2coaa1          64 GTNPHCFEIVTANATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQAL  111 (112)
T ss_dssp             TSCCEEEEEECSSCCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHG
T ss_pred             CCCccEEEEEeCCeEEEEecCCccccccccccChHHHHHHHHHHHHhh
Confidence            35678999999999999966           67889999999999885

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00021  Score=51.53  Aligned_cols=43  Identities=23%  Similarity=0.256  Sum_probs=36.7

Q ss_pred             CCcCCCceEEEEE-eceEEEEEeCCHHHHHHHHHHHHHHHHHHH
Q psy2207           7 QTEDYNNEFSVIA-ISRSFTLRARSANERLEWIDAIQTAIKENE   49 (305)
Q Consensus         7 ~~~~~~~~f~i~~-~~ksf~~~a~s~~ek~~W~~~i~~ai~~~~   49 (305)
                      +.....+.|.|.+ +.++|.|.|+|++|+.+|+++|+.||....
T Consensus        61 ~~~~~~~~f~l~~~~~~~~~~~a~s~~e~~~Wi~ai~~ai~~~~  104 (113)
T d1plsa_          61 DFGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIKCIE  104 (113)
T ss_dssp             SSCCSSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCCcceEEEEecCCCeEEEEECCCHHHHHHHHHHHHHHHHhCc
Confidence            3456678899888 467999999999999999999999998753

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00015  Score=52.33  Aligned_cols=38  Identities=16%  Similarity=0.221  Sum_probs=32.7

Q ss_pred             CcCCCceEEEEEec--------eEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207           8 TEDYNNEFSVIAIS--------RSFTLRARSANERLEWIDAIQTAI   45 (305)
Q Consensus         8 ~~~~~~~f~i~~~~--------ksf~~~a~s~~ek~~W~~~i~~ai   45 (305)
                      ....+++|.|.++.        |+|.|+|+|++|+++|+++|..|.
T Consensus        62 ~~~~~~~F~l~~~~~~~~~~~~r~~~l~a~s~ed~~~W~~al~~A~  107 (111)
T d2dyna_          62 FMSSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAG  107 (111)
T ss_dssp             STTCSEEEEEEESSCSCSBTTBSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred             cccccccEEeeeccccccccCceeEEEECCCHHHHHHHHHHHHHhc
Confidence            34678899998754        789999999999999999998864

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=9.9e-05  Score=53.31  Aligned_cols=36  Identities=36%  Similarity=0.560  Sum_probs=30.7

Q ss_pred             cCCCceEEEEEec-eEEEEEeCCHHHHHHHHHHHHHH
Q psy2207           9 EDYNNEFSVIAIS-RSFTLRARSANERLEWIDAIQTA   44 (305)
Q Consensus         9 ~~~~~~f~i~~~~-ksf~~~a~s~~ek~~W~~~i~~a   44 (305)
                      ....+.|.|.+++ |.|.|.|+|++|+++|+++|+++
T Consensus        79 ~~~~~~f~i~~~~~~~~~f~a~s~ee~~~Wi~ai~~~  115 (116)
T d1x1ga1          79 NVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKL  115 (116)
T ss_dssp             CCCSSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHH
T ss_pred             ccccceeEEEeCCCeEEEEECCCHHHHHHHHHHHHhh
Confidence            3456789998865 57999999999999999999975

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00018  Score=53.25  Aligned_cols=26  Identities=31%  Similarity=0.567  Sum_probs=22.8

Q ss_pred             eEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207          22 RSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus        22 ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      +.|.|+|+|++|+++||++|+.+|..
T Consensus       100 ~~~~l~A~s~~e~~~Wi~al~~~i~~  125 (130)
T d1v88a_         100 SYLIIRATSESDGRCWMDALELALKS  125 (130)
T ss_dssp             SCCEEECSSHHHHHHHHHHHHHHHTT
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHhhc
Confidence            33789999999999999999999853

>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=97.17  E-value=0.00033  Score=50.97  Aligned_cols=37  Identities=22%  Similarity=0.342  Sum_probs=30.7

Q ss_pred             CCCceEEEEEec---eEEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207          10 DYNNEFSVIAIS---RSFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus        10 ~~~~~f~i~~~~---ksf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      +.++.|.|.+..   ..|.|+|.|++||+.|+++|+++++
T Consensus        74 d~~~~fli~~~~~~~~~y~l~A~s~~eK~~W~~~I~~~~~  113 (114)
T d1txda2          74 DNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAA  113 (114)
T ss_dssp             -CCEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEecCCCceEEEEEcCCHHHHHHHHHHHHHHhc
Confidence            346788888744   3799999999999999999999875

>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: UNC-89
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.12  E-value=0.001  Score=48.60  Aligned_cols=90  Identities=13%  Similarity=0.053  Sum_probs=58.3

Q ss_pred             CCCceeeeeeecc--CCCceEEEEEEECCEEEEEccCcc-----CccceEEEecCeEEEEccccCCcceeEEEEeCCc--
Q psy2207         208 SGSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASED-----IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQ--  278 (305)
Q Consensus       208 ~~~~~~G~L~~~~--~~~wkrrw~vL~~~~L~~y~~~~d-----~~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~~~~--  278 (305)
                      +..++.|++....  .+.+.|++| |=+..|.|.+....     ..-.+.|+|.++.|.....   ....|.|...+.  
T Consensus         8 G~ll~~~~f~v~~~~~k~k~R~vF-LF~~~ll~~K~~~~~~~~~y~~K~~i~l~~~~v~e~~g---d~~~F~i~~~~~~~   83 (119)
T d1fhoa_           8 GRIIRHDAFQVWEGDEPPKLRYVF-LFRNKIMFTEQDASTSPPSYTHYSSIRLDKYNIRQHTT---DEDTIVLQPQEPGL   83 (119)
T ss_dssp             CCSSEEEEEEECSTTCSCEEEEEE-EETTEEEEEEECCSSSSCCCSSCCEEESSSCEEEEECT---TCCEEEEECCSTTC
T ss_pred             CceEEEeEEEEEeCCCCceEEEEE-EEcCeEEEEEeccCCCCceEEEecEEECCceEEEEcCC---CCcEEEEEeCCCCC
Confidence            4457788887766  444555555 44555555553222     2236789999988875432   235788875432  


Q ss_pred             ----eeEEEEcCCHHHHHHHHHHHHHH
Q psy2207         279 ----DPLVFGADNEQSYERWMKAMREA  301 (305)
Q Consensus       279 ----~~~~f~a~s~e~~~~Wi~al~~a  301 (305)
                          ..+.+.|.|+++.+.|+.+|.++
T Consensus        84 ~~~~~~~~~~a~s~~~K~~Wv~~I~e~  110 (119)
T d1fhoa_          84 PSFRIKPKDFETSEYVRKAWLRDIAEE  110 (119)
T ss_dssp             CCBCCCCCSSSSCSHHHHHHHHHHHTC
T ss_pred             CcceEEEEEecCCHHHHHHHHHHHHHH
Confidence                14667789999999999999754

>d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Alpha-1-syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.022  Score=39.25  Aligned_cols=88  Identities=14%  Similarity=0.244  Sum_probs=65.7

Q ss_pred             ceeeeeeecc-------CCCceEEEEEEECCEEEEEccCccCccceEEEecCeEEEEcc-ccCCcceeEEEEeCCce-eE
Q psy2207         211 QHSGWLHKKS-------GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN-EQDNFKYVFQLKHQGQD-PL  281 (305)
Q Consensus       211 ~~~G~L~~~~-------~~~wkrrw~vL~~~~L~~y~~~~d~~p~~~i~L~~~~v~~~~-~~~~~~~~F~l~~~~~~-~~  281 (305)
                      ..+|.|..+-       ...|.|.-..|.+..|..--    ......|||.-|-|...- ..+-....|+|..+.++ ..
T Consensus         7 ~rsGlLE~~~~~~~~~~~~rW~rVl~~L~ed~Lt~s~----~~d~k~IPLKmcyvtR~~~~~D~EnR~lElhSpDG~~t~   82 (105)
T d2adza1           7 PRTGLLELRCGAGSGAGGERWQRVLLSLAEDALTVSP----LSEAKHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAV   82 (105)
T ss_dssp             CEEEEEEECCCCSSSSSCCCCEEEEEEEETTEEEEES----SCSCEEEETTTCEEEEECCSSCCSSCEEEEEETTTTEEE
T ss_pred             CccceEEEeeccCCCccccceeeeeeecccceEEeec----ccccceeeeeeEEeeecccCCCCcccEEEEECCCCCceE
Confidence            4788887773       56899999999999887753    224568999877776321 11222358999886554 67


Q ss_pred             EEEcCCHHHHHHHHHHHHHHH
Q psy2207         282 VFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       282 ~f~a~s~e~~~~Wi~al~~a~  302 (305)
                      +|+|.+..+++.|.+||+.++
T Consensus        83 iLR~kD~a~A~~WF~Aihs~i  103 (105)
T d2adza1          83 FLRAKDEASARSWAGAIQAQI  103 (105)
T ss_dssp             EECCSSHHHHHHHHHHHHHHH
T ss_pred             EEEcCCHHHHHHHHHHHHHhh
Confidence            999999999999999998765

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.89  E-value=0.00045  Score=50.53  Aligned_cols=32  Identities=25%  Similarity=0.456  Sum_probs=28.5

Q ss_pred             EEEEeceEEEEEeCCHHHHHHHHHHHHHHHHH
Q psy2207          16 SVIAISRSFTLRARSANERLEWIDAIQTAIKE   47 (305)
Q Consensus        16 ~i~~~~ksf~~~a~s~~ek~~W~~~i~~ai~~   47 (305)
                      .+.+..++|.|.|+|++|+++||.+|+.+|..
T Consensus        90 ~~~~~~~~~~f~a~s~~e~~~Wi~aL~~~i~~  121 (127)
T d1fgya_          90 VVEGNHVVYRISAPSPEEKEEWMKSIKASISR  121 (127)
T ss_dssp             EEECCCSEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             EeeCCCeEEEEECCCHHHHHHHHHHHHHHHcc
Confidence            44567789999999999999999999999975

>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.80  E-value=0.0092  Score=44.95  Aligned_cols=77  Identities=12%  Similarity=0.136  Sum_probs=49.0

Q ss_pred             ceEEEEEEECCEEEEEccCccC----------ccceEEEecCeEEEEccccCCcceeEEEEe-CCceeEEEEcCCHHHHH
Q psy2207         224 WKRYWFVLKDQVMYKYKASEDI----------KALLSIPVLGYELEALNEQDNFKYVFQLKH-QGQDPLVFGADNEQSYE  292 (305)
Q Consensus       224 wkrrw~vL~~~~L~~y~~~~d~----------~p~~~i~L~~~~v~~~~~~~~~~~~F~l~~-~~~~~~~f~a~s~e~~~  292 (305)
                      -+.|++.|=+..|.+-+.....          .-...|++..+.|....+  +..+.|.|.. .....|.|.|.|+++..
T Consensus        40 ~~~R~~FLF~~~Li~cK~~~~~~~~~~~~~~y~~k~~~~~~~~~v~~~~~--~~~~~f~~~~~~~~~~~~l~a~s~eeK~  117 (147)
T d1kz7a2          40 PMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITENVK--GDTKKFEIWYNAREEVYIIQAPTPEIKA  117 (147)
T ss_dssp             CEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGEEEECCBT--TBTTEEEEEETTTTEEEEEECSSHHHHH
T ss_pred             CceEEEEEecCcEEEEEecccCCcccccCceEEEeeEEecCCceeEecCC--CCcceEEEEeCCCCcEEEEEeCCHHHHH
Confidence            4667777766666665532211          113456666666654333  3345566554 34457999999999999


Q ss_pred             HHHHHHHHHH
Q psy2207         293 RWMKAMREAT  302 (305)
Q Consensus       293 ~Wi~al~~a~  302 (305)
                      .|+.+|+++.
T Consensus       118 ~W~~~I~~~l  127 (147)
T d1kz7a2         118 AWVNAIRKVL  127 (147)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.75  E-value=0.0052  Score=44.47  Aligned_cols=35  Identities=20%  Similarity=0.440  Sum_probs=30.2

Q ss_pred             CCceEEEE--EeceEEEEEeCCHHHHHHHHHHHHHHH
Q psy2207          11 YNNEFSVI--AISRSFTLRARSANERLEWIDAIQTAI   45 (305)
Q Consensus        11 ~~~~f~i~--~~~ksf~~~a~s~~ek~~W~~~i~~ai   45 (305)
                      ..++|.|+  +..|++.|.|+|++|++.|+.+|+.-+
T Consensus        82 ~~~~FsIv~~~~~r~l~l~a~s~~~~~~Wv~~L~~L~  118 (119)
T d1maia_          82 EDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRKII  118 (119)
T ss_dssp             GGGEEEEEESSSCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCcEEEEEECCHHHHHHHHHHHHHHh
Confidence            35689998  577999999999999999999998644

>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.32  E-value=0.0011  Score=48.76  Aligned_cols=37  Identities=19%  Similarity=0.306  Sum_probs=31.8

Q ss_pred             CcccccccccccccccccccccccceeccCccCCeecccCC
Q psy2207          84 VSMCQRCTSVFTVTFRRHHCRACGKVVCGPCSDYLAPLEYK  124 (305)
Q Consensus        84 ~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs~~~~~l~~~  124 (305)
                      +..|++|+.+    ...+-+-+.|..+|..||+.|+.|+..
T Consensus        15 N~~CaDC~~~----~p~w~s~n~GvfvC~~CsgiHR~lg~~   51 (122)
T d1dcqa2          15 NDVCCDCGAP----DPTWLSTNLGILTCIECSGIHRELGVH   51 (122)
T ss_dssp             TTBCTTTCCB----SCCEEETTTTEEECHHHHHHHHHHCTT
T ss_pred             CCccCCCCCC----CCCeEEecCCEEEchhhhHHHhcCCCC
Confidence            6789999984    456788999999999999999999753

>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: UNC-89
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.96  E-value=0.0014  Score=47.89  Aligned_cols=40  Identities=10%  Similarity=0.063  Sum_probs=32.5

Q ss_pred             CCceEEEEEece-------EEEEEeCCHHHHHHHHHHHHHHHHHHHh
Q psy2207          11 YNNEFSVIAISR-------SFTLRARSANERLEWIDAIQTAIKENEQ   50 (305)
Q Consensus        11 ~~~~f~i~~~~k-------sf~~~a~s~~ek~~W~~~i~~ai~~~~~   50 (305)
                      -.+.|.|....+       +|.++|+|+++|+.|+++|.++++...+
T Consensus        70 d~~~F~i~~~~~~~~~~~~~~~~~a~s~~~K~~Wv~~I~e~~~~~~~  116 (119)
T d1fhoa_          70 DEDTIVLQPQEPGLPSFRIKPKDFETSEYVRKAWLRDIAEEQEKYAA  116 (119)
T ss_dssp             TCCEEEEECCSTTCCCBCCCCCSSSSCSHHHHHHHHHHHTCCHHHHC
T ss_pred             CCcEEEEEeCCCCCCcceEEEEEecCCHHHHHHHHHHHHHHHHHhhc
Confidence            357899986543       6778889999999999999998877654

>d1foea2 b.55.1.1 (A:1240-1401) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.72  E-value=0.86  Score=33.54  Aligned_cols=81  Identities=17%  Similarity=0.229  Sum_probs=57.6

Q ss_pred             CCceEEEEEEECCEEEEEccCcc----------------Ccc---ceEEEecCeEEEEcccc-CCcceeEEEEeCC----
Q psy2207         222 RNWKRYWFVLKDQVMYKYKASED----------------IKA---LLSIPVLGYELEALNEQ-DNFKYVFQLKHQG----  277 (305)
Q Consensus       222 ~~wkrrw~vL~~~~L~~y~~~~d----------------~~p---~~~i~L~~~~v~~~~~~-~~~~~~F~l~~~~----  277 (305)
                      +.-.-.-||++..++.+|+....                ..|   ...||+....|...... ....+.++|+|..    
T Consensus        48 k~pel~~FVFK~AVV~vcke~sk~KkKl~~~~~~~~~~e~d~~rFr~mIP~~alQVR~~~~~~~es~~vwEiiH~kSe~e  127 (162)
T d1foea2          48 KEPELAAFVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPTEALQVRALPSADAEANAVCEIVHVKSESE  127 (162)
T ss_dssp             SSCEEEEEEETTEEEEEECCCCCSCCSSCCCTTTTCSSCSCSCCCEEEEEGGGEEEECCCCTTTTSCCEEEEEECCBTGG
T ss_pred             CCCcEEEEEecceEEEEEcccchhhhhccCccccccccccCceeEEEEeeeeeeEeecccccCCCcceEEEEEeeccccc
Confidence            34444568888888888886221                111   34688888888754322 3456899999943    


Q ss_pred             ---ceeEEEEcCCHHHHHHHHHHHHHHH
Q psy2207         278 ---QDPLVFGADNEQSYERWMKAMREAT  302 (305)
Q Consensus       278 ---~~~~~f~a~s~e~~~~Wi~al~~a~  302 (305)
                         +++|.|++.+.|....-+.+|+.-.
T Consensus       128 gRpE~vfqlc~St~E~K~~flK~Ir~il  155 (162)
T d1foea2         128 GRPERVFHLCCSSPESRKDFLKSVHSIL  155 (162)
T ss_dssp             GBCCEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCcceEEEEecCCHHHHHHHHHHHHHHH
Confidence               4689999999999999999998654

>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 domain containing protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.39  E-value=0.15  Score=33.03  Aligned_cols=32  Identities=28%  Similarity=0.705  Sum_probs=25.1

Q ss_pred             cCCCcccccccccccccccccccccccceeccCcc
Q psy2207          81 DSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCS  115 (305)
Q Consensus        81 d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs  115 (305)
                      ......|..|..+.+++.  ..|| ||.+||..+-
T Consensus        22 k~k~~RC~~C~KKl~l~~--~~Cr-Cg~~FC~~HR   53 (74)
T d1wfla_          22 KPKKNRCFMCRKKVGLTG--FDCR-CGNLFCGLHR   53 (74)
T ss_dssp             CSCTTBCSSSCCBCGGGC--EECT-TSCEECSSSC
T ss_pred             CCCCCcChhhCCccccee--eEcc-CCCEehhhcC
Confidence            344679999999998863  5797 9999997653

>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: ANUBL1 (AN1, ubiquitin-like, homolog)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.30  E-value=0.14  Score=34.13  Aligned_cols=33  Identities=21%  Similarity=0.556  Sum_probs=25.8

Q ss_pred             cCCCcccccccccccccccccccccccceeccCcc
Q psy2207          81 DSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCS  115 (305)
Q Consensus        81 d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs  115 (305)
                      ......|..|....+++. ...|| ||.+||..+-
T Consensus        22 k~~~~RC~~C~KKl~l~~-~~~Cr-Cg~~FC~~HR   54 (85)
T d1wffa_          22 KKIMKHCFLCGKKTGLAT-SFECR-CGNNFCASHR   54 (85)
T ss_dssp             CCCCCBCSSSCCBCSSSS-CEECT-TCCEECTTTC
T ss_pred             cccCCcChhcCCeecCCc-CeecC-CCCEehhhcC
Confidence            344568999999998765 36897 9999997654

>d2zkmx3 b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.38  E-value=2.8  Score=29.90  Aligned_cols=33  Identities=9%  Similarity=0.058  Sum_probs=27.6

Q ss_pred             eeEEEEeCCc----eeEEEEcCCHHHHHHHHHHHHHH
Q psy2207         269 YVFQLKHQGQ----DPLVFGADNEQSYERWMKAMREA  301 (305)
Q Consensus       269 ~~F~l~~~~~----~~~~f~a~s~e~~~~Wi~al~~a  301 (305)
                      .+|.|++...    +.+.|.|.|+++++.|+..|+.-
T Consensus        87 ~~ftIvyg~~~v~l~~l~lVA~s~~~a~~W~~gL~~L  123 (131)
T d2zkmx3          87 KTLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLAL  123 (131)
T ss_dssp             TEEEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHHH
T ss_pred             cEEEEEECCCcccceEEEEEeCCHHHHHHHHHHHHHH
Confidence            5999998532    56789999999999999999753

>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At1g12440
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.64  E-value=0.35  Score=31.19  Aligned_cols=32  Identities=34%  Similarity=0.770  Sum_probs=24.3

Q ss_pred             cCCCcccccccccccccccccccccccceeccCcc
Q psy2207          81 DSRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCS  115 (305)
Q Consensus        81 d~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs  115 (305)
                      ......|..|..+.+++.  .-|| ||.+||..+-
T Consensus        22 k~kk~RC~~C~KKl~l~~--~~Cr-Cg~~FC~~HR   53 (74)
T d1wfpa_          22 KSTATRCLSCNKKVGVTG--FKCR-CGSTFCGTHR   53 (74)
T ss_dssp             TCCCCBCSSSCCBCTTTC--EECT-TSCEECTTTC
T ss_pred             CCCCCcChhcCCccCCCc--eecC-CCChhhhccC
Confidence            344678999999988763  5564 9999997654

>d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Alpha-1-syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.71  E-value=0.62  Score=31.77  Aligned_cols=38  Identities=24%  Similarity=0.333  Sum_probs=32.2

Q ss_pred             cCCCceEEEEEece--EEEEEeCCHHHHHHHHHHHHHHHH
Q psy2207           9 EDYNNEFSVIAISR--SFTLRARSANERLEWIDAIQTAIK   46 (305)
Q Consensus         9 ~~~~~~f~i~~~~k--sf~~~a~s~~ek~~W~~~i~~ai~   46 (305)
                      +...+.|+|.+|+.  +..|.+.+..+-+.|+++|+..|.
T Consensus        65 D~EnR~lElhSpDG~~t~iLR~kD~a~A~~WF~Aihs~i~  104 (105)
T d2adza1          65 DPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG  104 (105)
T ss_dssp             CCSSCEEEEEETTTTEEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred             CCcccEEEEECCCCCceEEEEcCCHHHHHHHHHHHHHhhc
Confidence            33467999999876  777899999999999999998764

>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At2g36320
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.82  E-value=0.25  Score=30.94  Aligned_cols=31  Identities=32%  Similarity=0.746  Sum_probs=24.7

Q ss_pred             CCCcccccccccccccccccccccccceeccCcc
Q psy2207          82 SRVSMCQRCTSVFTVTFRRHHCRACGKVVCGPCS  115 (305)
Q Consensus        82 ~~~~~C~~C~~~f~~~~rrhhCr~cg~v~C~~Cs  115 (305)
                      .....|..|..+.+++.  -.|| ||.+||..+-
T Consensus        13 ~k~~RC~~C~KKl~l~~--~~Cr-Cg~~FC~~HR   43 (64)
T d1wfha_          13 QRPNRCTVCRKRVGLTG--FMCR-CGTTFCGSHR   43 (64)
T ss_dssp             SSCCCCTTTCCCCCTTC--EECS-SSCEECTTTC
T ss_pred             CCCCcChhhCCCcccee--eecc-CCCEehhhcC
Confidence            34568999999998864  5797 9999997654