Psyllid ID: psy2248

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
Protein Sequence
VGPSRLSQSQQNENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQSV
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHccEEEEHccHEEEEcccccc
Coil and Loop (DISEMBL)
vgpsrlsqsqqNENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAflivgdaqsv
Flexible Loop (DISEMBL)
vgpsrlsqsqqneNAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQSV
Low Complexity Region (SEG)
VGPSRLSQSQQNENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQSV
Disordered region (IsUnstruct)
*************************************************************************VELAAAQEKQMEVCTVCGAFLIVG*****
Disordered Region (DISOPRED)
***********************KINNLVSEAERVGMEGSVEKAQGLMKLCD*********************************VCTVCGAFLIVGDA***
Disordered Region (DISEMBL)
***************EQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQSV
Disordered Region (DISPRO)
****RLS*SQQNENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGD****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
VGPSRLSQSQQNENAEQITLLSEKINNLVSEAERVGMEGSVEKxxxxxxxxxxxxxxxxxxxxxxxxNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	102	2.2.26 [Sep-21-2011]
Q5R8W6	432	Luc7-like protein 3 OS=Po	yes	N/A	0.882	0.208	0.557	4e-22
O95232	432	Luc7-like protein 3 OS=Ho	yes	N/A	0.882	0.208	0.557	4e-22
Q3SX41	432	Luc7-like protein 3 OS=Bo	yes	N/A	0.882	0.208	0.557	5e-22
Q5SUF2	432	Luc7-like protein 3 OS=Mu	no	N/A	0.882	0.208	0.557	5e-22
Q54XQ8	360	Luc7-like protein OS=Dict	yes	N/A	0.764	0.216	0.375	1e-07
Q9Y383	392	Putative RNA-binding prot	no	N/A	0.911	0.237	0.278	9e-05
Q7TNC4	392	Putative RNA-binding prot	no	N/A	0.911	0.237	0.278	0.0001
Q9NQ29	371	Putative RNA-binding prot	no	N/A	0.911	0.250	0.25	0.0001
Q9CYI4	371	Putative RNA-binding prot	no	N/A	0.911	0.250	0.25	0.0002

>sp|Q5R8W6|LC7L3_PONAB Luc7-like protein 3 OS=Pongo abelii GN=LUC7L3 PE=2 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 75/104 (72%), Gaps = 14/104 (13%)

Query: 6   LSQSQQN--------ENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEE 57
           LSQ+QQ+        +N E+I +L++KI+ L+ + E +G EG VE+AQG+MKL +QLKEE
Sbjct: 109 LSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEE 168

Query: 58  REMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQS 101
           RE+LR        + T+E  AAQEKQMEVC VCGAFLIVGDAQS
Sbjct: 169 RELLRS------TTSTIESFAAQEKQMEVCEVCGAFLIVGDAQS 206

Binds cAMP regulatory element DNA sequence. May play a role in RNA splicing.
Pongo abelii (taxid: 9601)

>sp|O95232|LC7L3_HUMAN Luc7-like protein 3 OS=Homo sapiens GN=LUC7L3 PE=1 SV=2

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 75/104 (72%), Gaps = 14/104 (13%)

Query: 6   LSQSQQN--------ENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEE 57
           LSQ+QQ+        +N E+I +L++KI+ L+ + E +G EG VE+AQG+MKL +QLKEE
Sbjct: 109 LSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEE 168

Query: 58  REMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQS 101
           RE+LR        + T+E  AAQEKQMEVC VCGAFLIVGDAQS
Sbjct: 169 RELLRS------TTSTIESFAAQEKQMEVCEVCGAFLIVGDAQS 206

Binds cAMP regulatory element DNA sequence. May play a role in RNA splicing.

Homo sapiens (taxid: 9606)

>sp|Q3SX41|LC7L3_BOVIN Luc7-like protein 3 OS=Bos taurus GN=LUC7L3 PE=2 SV=1

 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 75/104 (72%), Gaps = 14/104 (13%)

Query: 6   LSQSQQN--------ENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEE 57
           LSQ+QQ+        +N E+I +L++KI+ L+ + E +G EG VE+AQG+MKL +QLKEE
Sbjct: 109 LSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEE 168

Query: 58  REMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQS 101
           RE+LR        + T+E  AAQEKQMEVC VCGAFLIVGDAQS
Sbjct: 169 RELLRS------TTSTIESFAAQEKQMEVCEVCGAFLIVGDAQS 206

Binds cAMP regulatory element DNA sequence. May play a role in RNA splicing.

Bos taurus (taxid: 9913)

>sp|Q5SUF2|LC7L3_MOUSE Luc7-like protein 3 OS=Mus musculus GN=Luc7l3 PE=1 SV=1

 Score =  102 bits (255), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 75/104 (72%), Gaps = 14/104 (13%)

Query: 6   LSQSQQN--------ENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEE 57
           LSQ+QQ+        +N E+I +L++KI+ L+ + E +G EG VE+AQG+MKL +QLKEE
Sbjct: 109 LSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEE 168

Query: 58  REMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQS 101
           RE+LR        + T+E  AAQEKQMEVC VCGAFLIVGDAQS
Sbjct: 169 RELLRS------TTSTIESFAAQEKQMEVCEVCGAFLIVGDAQS 206

Binds cAMP regulatory element DNA sequence. May play a role in RNA splicing.

Mus musculus (taxid: 10090)

>sp|Q54XQ8|LUC7L_DICDI Luc7-like protein OS=Dictyostelium discoideum GN=crop PE=3 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 10/88 (11%)

Query: 13  ENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQNDNNHWSQ 72
           E   +IT L  KI  L+ +AE +G EG + +AQ LM   D+LK ++  L K         
Sbjct: 144 EQNSKITELDLKIQELLKKAEELGEEGQITEAQALMTEADELKNQKVELEK--------- 194

Query: 73  TVELAAAQEKQMEVCTVCGAFLIVGDAQ 100
            +E    + K+M VC +CGA L VGD +
Sbjct: 195 -IEQEKNENKRMSVCEICGALLFVGDKE 221

May play a role in RNA splicing.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9Y383|LC7L2_HUMAN Putative RNA-binding protein Luc7-like 2 OS=Homo sapiens GN=LUC7L2 PE=1 SV=2

 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 63/104 (60%), Gaps = 11/104 (10%)

Query: 1   VGPSRLSQSQQN------ENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQL 54
           V   RL+++Q+         AE++  L+E+I  L+++ E++G EG+VE++Q +M   D++
Sbjct: 103 VAKKRLAETQEEISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVM---DEV 159

Query: 55  KEEREMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGD 98
           ++ R   +K+     +  ++  ++ Q++++ VC VC A+L + D
Sbjct: 160 EKAR--AKKREAEEVYRNSMPASSFQQQKLRVCEVCSAYLGLHD 201

May bind to RNA via its Arg/Ser-rich domain.

Homo sapiens (taxid: 9606)

>sp|Q7TNC4|LC7L2_MOUSE Putative RNA-binding protein Luc7-like 2 OS=Mus musculus GN=Luc7l2 PE=1 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 63/104 (60%), Gaps = 11/104 (10%)

Query: 1   VGPSRLSQSQQN------ENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQL 54
           V   RL+++Q+         AE++  L+E+I  L+++ E++G EG+VE++Q +M   D++
Sbjct: 103 VSKKRLAETQEEISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVM---DEV 159

Query: 55  KEEREMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGD 98
           ++ R   +K+     +  ++  ++ Q++++ VC VC A+L + D
Sbjct: 160 EKAR--AKKREAEEVYRNSMPASSFQQQKLRVCEVCSAYLGLHD 201

May bind to RNA via its Arg/Ser-rich domain.

Mus musculus (taxid: 10090)

>sp|Q9NQ29|LUC7L_HUMAN Putative RNA-binding protein Luc7-like 1 OS=Homo sapiens GN=LUC7L PE=1 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 63/104 (60%), Gaps = 11/104 (10%)

Query: 1   VGPSRLSQSQQ------NENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQL 54
           +   RL+++Q+      +  AE++  L+E+I  L+++AE++G EG+V+++Q ++     +
Sbjct: 103 LAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKIL-----M 157

Query: 55  KEEREMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGD 98
           + E+   +K+     +  ++  ++ Q++++ VC VC A+L + D
Sbjct: 158 EVEKVRAKKKEAEEEYRNSMPASSFQQQKLRVCEVCSAYLGLHD 201

May bind to RNA via its Arg/Ser-rich domain.

Homo sapiens (taxid: 9606)

>sp|Q9CYI4|LUC7L_MOUSE Putative RNA-binding protein Luc7-like 1 OS=Mus musculus GN=Luc7l PE=2 SV=2

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 63/104 (60%), Gaps = 11/104 (10%)

Query: 1   VGPSRLSQSQQ------NENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQL 54
           +   RL+++Q+      +  AE++  L+E+I  L+++AE++G EG+V+++Q ++     +
Sbjct: 103 LAKKRLAETQEEISAEVSAKAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKIL-----M 157

Query: 55  KEEREMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGD 98
           + E+   +K+     +  ++  ++ Q++++ VC VC A+L + D
Sbjct: 158 EVEKVRAKKKEAEEEYRNSMPASSFQQQKLRVCEVCSAYLGLHD 201

May bind to RNA via its Arg/Ser-rich domain.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
209180431	336	cisplatin resistance-associated overexpr	0.970	0.294	0.757	1e-34
345482657	388	PREDICTED: luc7-like protein 3-like [Nas	0.931	0.244	0.747	2e-33
383854716	357	PREDICTED: luc7-like protein 3-like [Meg	0.931	0.266	0.736	3e-33
340724940	355	PREDICTED: luc7-like protein 3-like [Bom	0.931	0.267	0.736	3e-33
350422078	355	PREDICTED: luc7-like protein 3-like [Bom	0.931	0.267	0.736	3e-33
332017477	378	Cisplatin resistance-associated overexpr	0.931	0.251	0.736	3e-33
380027599	365	PREDICTED: luc7-like protein 3-like [Api	0.931	0.260	0.736	3e-33
328776277	355	PREDICTED: luc7-like protein 3-like [Api	0.931	0.267	0.736	3e-33
307202015	305	Cisplatin resistance-associated overexpr	0.911	0.304	0.747	5e-33
307186803	338	Cisplatin resistance-associated overexpr	0.931	0.281	0.726	8e-33

>gi|209180431|ref|NP_001129197.1| cisplatin resistance-associated overexpressed protein [Acyrthosiphon pisum]

 Score =  149 bits (377), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/99 (75%), Positives = 82/99 (82%)

Query: 3   PSRLSQSQQNENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLR 62
           P   S SQ  +N EQI LLSEKIN LV EAE++G  G VE+AQGLMKLCDQLKEER+ LR
Sbjct: 118 PVSHSNSQSQKNQEQIKLLSEKINGLVQEAEQMGTRGHVEEAQGLMKLCDQLKEERDTLR 177

Query: 63  KQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQS 101
           KQN++ HWSQT ELAAAQEKQMEVC VCGAFLIVGDAQS
Sbjct: 178 KQNESIHWSQTYELAAAQEKQMEVCEVCGAFLIVGDAQS 216

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345482657|ref|XP_001608026.2| PREDICTED: luc7-like protein 3-like [Nasonia vitripennis]

 Score =  146 bits (368), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/95 (74%), Positives = 83/95 (87%)

Query: 6   LSQSQQNENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQN 65
           LS +Q  +N EQI LL+EKIN LV EAE+ G++G+VE+AQGLM+LCDQLKEERE LRK N
Sbjct: 121 LSPAQTQKNEEQIALLTEKINKLVEEAEQSGIQGNVEQAQGLMRLCDQLKEERETLRKSN 180

Query: 66  DNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQ 100
           DN+H++QT ELAAAQEKQMEVC VCGAFLIVGDAQ
Sbjct: 181 DNSHYNQTAELAAAQEKQMEVCDVCGAFLIVGDAQ 215

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854716|ref|XP_003702866.1| PREDICTED: luc7-like protein 3-like [Megachile rotundata]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/95 (73%), Positives = 82/95 (86%)

Query: 6   LSQSQQNENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQN 65
           L+ +Q   N EQI LL+EKIN LV EAE+ G++G+VE+AQGLM+LCDQLKEERE LRK N
Sbjct: 121 LTPAQTQRNEEQIALLTEKINKLVEEAEQSGIQGNVEQAQGLMRLCDQLKEERETLRKSN 180

Query: 66  DNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQ 100
           DN+H++QT ELAAAQEKQMEVC VCGAFLIVGDAQ
Sbjct: 181 DNSHYNQTAELAAAQEKQMEVCDVCGAFLIVGDAQ 215

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724940|ref|XP_003400836.1| PREDICTED: luc7-like protein 3-like [Bombus terrestris]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/95 (73%), Positives = 82/95 (86%)

Query: 6   LSQSQQNENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQN 65
           L+ +Q   N EQI LL+EKIN LV EAE+ G++G+VE+AQGLM+LCDQLKEERE LRK N
Sbjct: 121 LTPAQTQRNEEQIALLTEKINKLVEEAEQSGIQGNVEQAQGLMRLCDQLKEERETLRKSN 180

Query: 66  DNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQ 100
           DN+H++QT ELAAAQEKQMEVC VCGAFLIVGDAQ
Sbjct: 181 DNSHYNQTAELAAAQEKQMEVCDVCGAFLIVGDAQ 215

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422078|ref|XP_003493049.1| PREDICTED: luc7-like protein 3-like [Bombus impatiens]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/95 (73%), Positives = 82/95 (86%)

Query: 6   LSQSQQNENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQN 65
           L+ +Q   N EQI LL+EKIN LV EAE+ G++G+VE+AQGLM+LCDQLKEERE LRK N
Sbjct: 121 LTPAQTQRNEEQIALLTEKINKLVEEAEQSGIQGNVEQAQGLMRLCDQLKEERETLRKSN 180

Query: 66  DNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQ 100
           DN+H++QT ELAAAQEKQMEVC VCGAFLIVGDAQ
Sbjct: 181 DNSHYNQTAELAAAQEKQMEVCDVCGAFLIVGDAQ 215

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017477|gb|EGI58200.1| Cisplatin resistance-associated overexpressed protein [Acromyrmex echinatior]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/95 (73%), Positives = 82/95 (86%)

Query: 6   LSQSQQNENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQN 65
           L+ +Q   N EQI LL+EKIN LV EAE+ G++G+VE+AQGLM+LCDQLKEERE LRK N
Sbjct: 121 LTPAQTQRNEEQIALLTEKINKLVEEAEQSGIQGNVEQAQGLMRLCDQLKEERETLRKSN 180

Query: 66  DNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQ 100
           DN+H++QT ELAAAQEKQMEVC VCGAFLIVGDAQ
Sbjct: 181 DNSHYNQTAELAAAQEKQMEVCDVCGAFLIVGDAQ 215

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380027599|ref|XP_003697509.1| PREDICTED: luc7-like protein 3-like [Apis florea]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/95 (73%), Positives = 82/95 (86%)

Query: 6   LSQSQQNENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQN 65
           L+ +Q   N EQI LL+EKIN LV EAE+ G++G+VE+AQGLM+LCDQLKEERE LRK N
Sbjct: 121 LTPAQTQRNEEQIALLTEKINKLVEEAEQSGIQGNVEQAQGLMRLCDQLKEERETLRKSN 180

Query: 66  DNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQ 100
           DN+H++QT ELAAAQEKQMEVC VCGAFLIVGDAQ
Sbjct: 181 DNSHYNQTAELAAAQEKQMEVCDVCGAFLIVGDAQ 215

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328776277|ref|XP_003249140.1| PREDICTED: luc7-like protein 3-like [Apis mellifera]

 Score =  145 bits (366), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 70/95 (73%), Positives = 82/95 (86%)

Query: 6   LSQSQQNENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQN 65
           L+ +Q   N EQI LL+EKIN LV EAE+ G++G+VE+AQGLM+LCDQLKEERE LRK N
Sbjct: 121 LTPAQTQRNEEQIALLTEKINKLVEEAEQSGIQGNVEQAQGLMRLCDQLKEERETLRKSN 180

Query: 66  DNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQ 100
           DN+H++QT ELAAAQEKQMEVC VCGAFLIVGDAQ
Sbjct: 181 DNSHYNQTAELAAAQEKQMEVCDVCGAFLIVGDAQ 215

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307202015|gb|EFN81579.1| Cisplatin resistance-associated overexpressed protein [Harpegnathos saltator]

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 71/95 (74%), Positives = 85/95 (89%), Gaps = 2/95 (2%)

Query: 6   LSQSQQNENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQN 65
           L+Q+Q+NE  EQI LL+EKIN LV EAE+ G++G+VE+AQGLM+LCDQLKEERE L+K N
Sbjct: 123 LAQTQKNE--EQIALLTEKINKLVDEAEQSGIQGNVEQAQGLMRLCDQLKEERETLKKSN 180

Query: 66  DNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQ 100
           DN+H++QT ELAAAQEKQMEVC VCGAFLIVGDAQ
Sbjct: 181 DNSHYNQTAELAAAQEKQMEVCDVCGAFLIVGDAQ 215

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186803|gb|EFN72226.1| Cisplatin resistance-associated overexpressed protein [Camponotus floridanus]

 Score =  144 bits (362), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 69/95 (72%), Positives = 81/95 (85%)

Query: 6   LSQSQQNENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQN 65
           L+ +Q   N EQI LL+EKIN LV EAE+ G+ G+VE+AQGLM+LCDQLK+ERE LRK N
Sbjct: 121 LTPAQTQRNEEQIALLTEKINKLVEEAEQSGIRGNVEEAQGLMRLCDQLKDERETLRKSN 180

Query: 66  DNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQ 100
           DN+H++QT ELAAAQEKQMEVC VCGAFLIVGDAQ
Sbjct: 181 DNSHYNQTAELAAAQEKQMEVCDVCGAFLIVGDAQ 215

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
UNIPROTKB|B4DJ96	356	LUC7L3 "Luc7-like protein 3" [	0.882	0.252	0.557	1.1e-21
UNIPROTKB|Q3SX41	432	LUC7L3 "Luc7-like protein 3" [	0.882	0.208	0.557	3.1e-21
UNIPROTKB|O95232	432	LUC7L3 "Luc7-like protein 3" [	0.882	0.208	0.557	3.1e-21
UNIPROTKB|F1RTB6	432	LUC7L3 "Uncharacterized protei	0.882	0.208	0.557	3.1e-21
UNIPROTKB|Q5R8W6	432	LUC7L3 "Luc7-like protein 3" [	0.882	0.208	0.557	3.1e-21
MGI|MGI:1914934	432	Luc7l3 "LUC7-like 3 (S. cerevi	0.882	0.208	0.557	3.1e-21
UNIPROTKB|E1C6U8	434	LUC7L3 "Uncharacterized protei	0.882	0.207	0.557	3.1e-21
RGD|1307981	477	Luc7l3 "LUC7-like 3 (S. cerevi	0.882	0.188	0.557	4.6e-21
FB|FBgn0029887	438	CG3198 [Drosophila melanogaste	0.764	0.178	0.380	2.4e-17
TAIR|locus:2163640	334	AT5G51410 "AT5G51410" [Arabido	0.794	0.242	0.402	3.7e-12

UNIPROTKB|B4DJ96 LUC7L3 "Luc7-like protein 3" [Homo sapiens (taxid:9606)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 58/104 (55%), Positives = 75/104 (72%)

Query:     6 LSQSQQN--------ENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEE 57
             LSQ+QQ+        +N E+I +L++KI+ L+ + E +G EG VE+AQG+MKL +QLKEE
Sbjct:    33 LSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEE 92

Query:    58 REMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQS 101
             RE+LR        + T+E  AAQEKQMEVC VCGAFLIVGDAQS
Sbjct:    93 RELLRST------TSTIESFAAQEKQMEVCEVCGAFLIVGDAQS 130

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005925 "focal adhesion" evidence=IDA

UNIPROTKB|Q3SX41 LUC7L3 "Luc7-like protein 3" [Bos taurus (taxid:9913)]

 Score = 253 (94.1 bits), Expect = 3.1e-21, P = 3.1e-21
 Identities = 58/104 (55%), Positives = 75/104 (72%)

Query:     6 LSQSQQN--------ENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEE 57
             LSQ+QQ+        +N E+I +L++KI+ L+ + E +G EG VE+AQG+MKL +QLKEE
Sbjct:   109 LSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEE 168

Query:    58 REMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQS 101
             RE+LR        + T+E  AAQEKQMEVC VCGAFLIVGDAQS
Sbjct:   169 RELLRST------TSTIESFAAQEKQMEVCEVCGAFLIVGDAQS 206

GO:0008380 "RNA splicing" evidence=ISS

GO:0006950 "response to stress" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

GO:0016607 "nuclear speck" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|O95232 LUC7L3 "Luc7-like protein 3" [Homo sapiens (taxid:9606)]

 Score = 253 (94.1 bits), Expect = 3.1e-21, P = 3.1e-21
 Identities = 58/104 (55%), Positives = 75/104 (72%)

Query:     6 LSQSQQN--------ENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEE 57
             LSQ+QQ+        +N E+I +L++KI+ L+ + E +G EG VE+AQG+MKL +QLKEE
Sbjct:   109 LSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEE 168

Query:    58 REMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQS 101
             RE+LR        + T+E  AAQEKQMEVC VCGAFLIVGDAQS
Sbjct:   169 RELLRST------TSTIESFAAQEKQMEVCEVCGAFLIVGDAQS 206

GO:0003677 "DNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006915 "apoptotic process" evidence=IMP

GO:0006950 "response to stress" evidence=IMP

GO:0008380 "RNA splicing" evidence=IMP

GO:0003729 "mRNA binding" evidence=IMP

GO:0005730 "nucleolus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005925 "focal adhesion" evidence=IDA

UNIPROTKB|F1RTB6 LUC7L3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 253 (94.1 bits), Expect = 3.1e-21, P = 3.1e-21
 Identities = 58/104 (55%), Positives = 75/104 (72%)

Query:     6 LSQSQQN--------ENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEE 57
             LSQ+QQ+        +N E+I +L++KI+ L+ + E +G EG VE+AQG+MKL +QLKEE
Sbjct:   109 LSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEE 168

Query:    58 REMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQS 101
             RE+LR        + T+E  AAQEKQMEVC VCGAFLIVGDAQS
Sbjct:   169 RELLRST------TSTIESFAAQEKQMEVCEVCGAFLIVGDAQS 206

GO:0008380 "RNA splicing" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

UNIPROTKB|Q5R8W6 LUC7L3 "Luc7-like protein 3" [Pongo abelii (taxid:9601)]

 Score = 253 (94.1 bits), Expect = 3.1e-21, P = 3.1e-21
 Identities = 58/104 (55%), Positives = 75/104 (72%)

Query:     6 LSQSQQN--------ENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEE 57
             LSQ+QQ+        +N E+I +L++KI+ L+ + E +G EG VE+AQG+MKL +QLKEE
Sbjct:   109 LSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEE 168

Query:    58 REMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQS 101
             RE+LR        + T+E  AAQEKQMEVC VCGAFLIVGDAQS
Sbjct:   169 RELLRST------TSTIESFAAQEKQMEVCEVCGAFLIVGDAQS 206

GO:0003729 "mRNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

GO:0006950 "response to stress" evidence=ISS

GO:0008380 "RNA splicing" evidence=ISS

MGI|MGI:1914934 Luc7l3 "LUC7-like 3 (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 253 (94.1 bits), Expect = 3.1e-21, P = 3.1e-21
 Identities = 58/104 (55%), Positives = 75/104 (72%)

Query:     6 LSQSQQN--------ENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEE 57
             LSQ+QQ+        +N E+I +L++KI+ L+ + E +G EG VE+AQG+MKL +QLKEE
Sbjct:   109 LSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEE 168

Query:    58 REMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQS 101
             RE+LR        + T+E  AAQEKQMEVC VCGAFLIVGDAQS
Sbjct:   169 RELLRST------TSTIESFAAQEKQMEVCEVCGAFLIVGDAQS 206

GO:0003677 "DNA binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0006915 "apoptotic process" evidence=ISO

GO:0006950 "response to stress" evidence=ISO

GO:0008380 "RNA splicing" evidence=ISO

UNIPROTKB|E1C6U8 LUC7L3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 253 (94.1 bits), Expect = 3.1e-21, P = 3.1e-21
 Identities = 58/104 (55%), Positives = 75/104 (72%)

Query:     6 LSQSQQN--------ENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEE 57
             LSQ+QQ+        +N E+I +L++KI+ L+ + E +G EG VE+AQG+MKL +QLKEE
Sbjct:   109 LSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEE 168

Query:    58 REMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQS 101
             RE+LR        + T+E  AAQEKQMEVC VCGAFLIVGDAQS
Sbjct:   169 RELLRST------TSTIESFAAQEKQMEVCEVCGAFLIVGDAQS 206

GO:0003729 "mRNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

RGD|1307981 Luc7l3 "LUC7-like 3 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 253 (94.1 bits), Expect = 4.6e-21, P = 4.6e-21
 Identities = 58/104 (55%), Positives = 75/104 (72%)

Query:     6 LSQSQQN--------ENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEE 57
             LSQ+QQ+        +N E+I +L++KI+ L+ + E +G EG VE+AQG+MKL +QLKEE
Sbjct:   109 LSQNQQSSGAAGPTGKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEE 168

Query:    58 REMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGDAQS 101
             RE+LR        + T+E  AAQEKQMEVC VCGAFLIVGDAQS
Sbjct:   169 RELLRST------TSTIESFAAQEKQMEVCEVCGAFLIVGDAQS 206

GO:0003729 "mRNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005925 "focal adhesion" evidence=ISO

GO:0006915 "apoptotic process" evidence=ISO

GO:0006950 "response to stress" evidence=ISO

GO:0008380 "RNA splicing" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

FB|FBgn0029887 CG3198 [Drosophila melanogaster (taxid:7227)]

 Score = 146 (56.5 bits), Expect = 2.4e-17, Sum P(2) = 2.4e-17
 Identities = 32/84 (38%), Positives = 55/84 (65%)

Query:     3 PSRLSQSQQNENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLR 62
             P+ LS+ Q     EQ+  L+ +IN L+SEAE  G+ G V++AQ LM +C++LKEE+E L 
Sbjct:   120 PAPLSRHQ-----EQLANLTARINKLLSEAEEAGIRGDVDQAQDLMTVCEELKEEKEQLV 174

Query:    63 KQNDNNHWS-QTVELAAAQEKQME 85
             +Q + +H +  ++ L  + E +++
Sbjct:   175 QQYEAHHKAISSISLTKSAEDELQ 198

GO:0005685 "U1 snRNP" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

TAIR|locus:2163640 AT5G51410 "AT5G51410" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 3.7e-12, P = 3.7e-12
 Identities = 35/87 (40%), Positives = 56/87 (64%)

Query:    13 ENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQNDNNHWSQ 72
             E AEQ+++L EK+ NL+ + E +G EG V++A+ LM+  + L  E+ +L ++  +     
Sbjct:   126 EKAEQLSVLEEKVKNLLEQVEALGEEGKVDEAEALMRKVEGLNAEKTVLLQRPTDK---- 181

Query:    73 TVELAAAQEKQMEVCTVCGAFLIVGDA 99
                LA AQEK+M +C VCG+FL+  DA
Sbjct:   182 --VLAMAQEKKMALCEVCGSFLVANDA 206

GO:0003723 "RNA binding" evidence=TAS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O95232	LC7L3_HUMAN	No assigned EC number	0.5576	0.8823	0.2083	yes	N/A
Q5R8W6	LC7L3_PONAB	No assigned EC number	0.5576	0.8823	0.2083	yes	N/A
Q3SX41	LC7L3_BOVIN	No assigned EC number	0.5576	0.8823	0.2083	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	102
pfam03194	252	pfam03194, LUC7, LUC7 N_terminus	5e-16
COG5200	258	COG5200, LUC7, U1 snRNP component, mediates U1 snR	4e-04

>gnl|CDD|217417 pfam03194, LUC7, LUC7 N_terminus

 Score = 70.1 bits (172), Expect = 5e-16
 Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 2/92 (2%)

Query: 10  QQNENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQNDNNH 69
             +  AE++  L E+I  L++EAE +G EG V++A  LMK  ++LK +++ L   ++   
Sbjct: 117 AADSKAEELAELDEEIGKLLAEAEALGEEGKVDEAMKLMKEVEELKAKKKELEDSDEVR- 175

Query: 70  WSQTVELAAAQEKQMEVCTVCGAFLIVGDAQS 101
            +     A AQ++++ VC VCGA+L   D   
Sbjct: 176 -NAAPSSAQAQQQKLRVCEVCGAYLSRLDNDR 206

This family contains the N terminal region of several LUC7 protein homologues and only contains eukaryotic proteins. LUC7 has been shown to be a U1 snRNA associated protein with a role in splice site recognition. The family also contains human and mouse LUC7 like (LUC7L) proteins and human cisplatin resistance-associated overexpressed protein (CROP). Length = 252

>gnl|CDD|227527 COG5200, LUC7, U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]

 Score = 37.3 bits (86), Expect = 4e-04
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 4/86 (4%)

Query: 13  ENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQNDNNHWSQ 72
           E  E    + E I  L  E + +     VE+A       ++L+EER+ +++      +S 
Sbjct: 118 EKEELFNRVDESIGELGMEGDALAKRKLVERACSAFNELERLREERKEIKEA----VYSM 173

Query: 73  TVELAAAQEKQMEVCTVCGAFLIVGD 98
                    ++++VC +CGA+L   D
Sbjct: 174 VENNGQGTHQKLQVCGICGAYLSRLD 199

Length = 258

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	102
PF03194	254	LUC7: LUC7 N_terminus; InterPro: IPR004882 This fa	99.92
KOG0796|consensus	319		99.91
COG5200	258	LUC7 U1 snRNP component, mediates U1 snRNP associa	99.66
PRK15058	128	cytochrome b562; Provisional	90.0
PF07361	103	Cytochrom_B562: Cytochrome b562; InterPro: IPR0091	89.33
PRK09720	100	cybC cytochrome b562; Provisional	89.25
PRK06835	329	DNA replication protein DnaC; Validated	87.34
COG3783	100	CybC Soluble cytochrome b562 [Energy production an	81.72

>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes

Probab=99.92  E-value=5.1e-25  Score=167.32  Aligned_cols=84  Identities=49%  Similarity=0.749  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHh---hcccccchhhhhhhhhhhhccccchhh
Q psy2248          14 NAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRK---QNDNNHWSQTVELAAAQEKQMEVCTVC   90 (102)
Q Consensus        14 ~~e~i~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l~~---~~~~~~~~~~~~~~~~~~qkl~VCeVC   90 (102)
                      .+++|..|+++|+.++++||+||++|+||+|+++|.+++.|+.+++.++.   .+.+.    ..+...+++|+|+||+||
T Consensus       121 ~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~ek~~le~~~~~~~~~----~~~~~~~~~qkl~VCeVC  196 (254)
T PF03194_consen  121 KAEKIDELDEKIGELLKEAEELGEEGDVDEAQKLMEEVEKLKEEKEELEKELEEYRNS----IENSAQSQQQKLEVCEVC  196 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh----hhhhhcccccCccchhhh
Confidence            47899999999999999999999999999999999999999999999998   33221    122234689999999999


Q ss_pred             hhhhhcccccC
Q psy2248          91 GAFLIVGDAQS  101 (102)
Q Consensus        91 GA~Ls~~D~d~  101 (102)
                      |||||++|||+
T Consensus       197 GA~Ls~~D~d~  207 (254)
T PF03194_consen  197 GAFLSVGDNDR  207 (254)
T ss_pred             hhHHhccchHH
Confidence            99999999985

LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].

>KOG0796|consensus

Probab=99.91  E-value=7.7e-25  Score=170.02  Aligned_cols=85  Identities=44%  Similarity=0.659  Sum_probs=72.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHhhcccccchhhhhhhhhhhhccccchhh
Q psy2248          12 NENAEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKE-EREMLRKQNDNNHWSQTVELAAAQEKQMEVCTVC   90 (102)
Q Consensus        12 ~~~~e~i~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~-ek~~l~~~~~~~~~~~~~~~~~~~~qkl~VCeVC   90 (102)
                      ..++++|..|+++|+.++++||+||++|+||+||++|.++|.|+. +++.....+.+     +.+.+.+++|||+||+||
T Consensus       118 ~~k~~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~~~~e~E~lk~~e~e~~~~~~~~-----~~~~~~~~~qkl~VCeVC  192 (319)
T KOG0796|consen  118 ARKAEKVHELEEKIGKLLEKAEELGEEGNVEEAQKAMKEVEELKAKEKEEAEESYNT-----TMPGASAQQQKLRVCEVC  192 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----CcchhhhhhhhhhHHHhh
Confidence            344789999999999999999999999999999999999999997 55555444332     234566799999999999


Q ss_pred             hhhhhcccccC
Q psy2248          91 GAFLIVGDAQS  101 (102)
Q Consensus        91 GA~Ls~~D~d~  101 (102)
                      ||||+++|+|+
T Consensus       193 Ga~L~~~D~d~  203 (319)
T KOG0796|consen  193 GAFLSVNDADR  203 (319)
T ss_pred             hHHHhccchHH
Confidence            99999999986

>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]

Probab=99.66  E-value=2.5e-16  Score=117.56  Aligned_cols=83  Identities=23%  Similarity=0.380  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhccccchhhhhhh
Q psy2248          15 AEQITLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFL   94 (102)
Q Consensus        15 ~e~i~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l~~~~~~~~~~~~~~~~~~~~qkl~VCeVCGA~L   94 (102)
                      .+.++.+++.|+.+..+++.|...-.|+.|...+.++++|+.+++++..++.++    ..+.+++.+|||+||+||||||
T Consensus       120 ~e~~~~~d~sIg~lg~e~dalakrk~V~~a~~~f~el~rl~~~rkei~~~v~sm----~en~gq~thqklqvC~iCgayL  195 (258)
T COG5200         120 EELFNRVDESIGELGMEGDALAKRKLVERACSAFNELERLREERKEIKEAVYSM----VENNGQGTHQKLQVCGICGAYL  195 (258)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhCcchhhhhhhhhhhhhhhHH
Confidence            334444445555555555555555559999999999999999999999887542    3456778999999999999999


Q ss_pred             hcccccC
Q psy2248          95 IVGDAQS  101 (102)
Q Consensus        95 s~~D~d~  101 (102)
                      |+.|+|+
T Consensus       196 srlDtdr  202 (258)
T COG5200         196 SRLDTDR  202 (258)
T ss_pred             Hhcchhh
Confidence            9999986

>PRK15058 cytochrome b562; Provisional

Probab=90.00  E-value=1.9  Score=30.07  Aligned_cols=42  Identities=19%  Similarity=0.251  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy2248          16 EQITLLSEKINNLVS---EAERVGMEGSVEKAQGLMKLCDQLKEE   57 (102)
Q Consensus        16 e~i~~l~~~I~~ll~---eaE~LGeeG~VdeA~~l~~~ve~Lk~e   57 (102)
                      .++..+.+-++.++.   +++.|..+|++++|.....++..+|.+
T Consensus        78 ~e~K~Y~~G~d~Li~qID~a~~la~~GkL~eAK~~a~~l~~lR~e  122 (128)
T PRK15058         78 PEMKDFRHGFDILVGQIDGALKLANEGKVKEAQAAAEQLKTTRNA  122 (128)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence            455566666666554   556799999999999999998888754

>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli

Probab=89.33  E-value=1.9  Score=28.64  Aligned_cols=42  Identities=24%  Similarity=0.469  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy2248          16 EQITLLSEKINNLVS---EAERVGMEGSVEKAQGLMKLCDQLKEE   57 (102)
Q Consensus        16 e~i~~l~~~I~~ll~---eaE~LGeeG~VdeA~~l~~~ve~Lk~e   57 (102)
                      .++..+.+-++.++.   .++.+.+.|++++|...+.++..||.+
T Consensus        53 ~~~~~Y~~Gl~~li~~id~a~~~~~~G~l~~AK~~l~~l~~lR~e   97 (103)
T PF07361_consen   53 AEVKDYQEGLDKLIDQIDKAEALAEAGKLDEAKAALKKLDDLRKE   97 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            344555555555544   566789999999999999999999865

In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....

>PRK09720 cybC cytochrome b562; Provisional

Probab=89.25  E-value=2.7  Score=28.22  Aligned_cols=42  Identities=19%  Similarity=0.279  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHHHH
Q psy2248          15 AEQITLLSEKINNLVSE---AERVGMEGSVEKAQGLMKLCDQLKE   56 (102)
Q Consensus        15 ~e~i~~l~~~I~~ll~e---aE~LGeeG~VdeA~~l~~~ve~Lk~   56 (102)
                      ..++..+..-+..++.+   +..|..+|++++|.....++-.+|.
T Consensus        49 s~e~K~y~~Gld~lI~qID~A~~La~~GkL~eAK~~a~~l~~~Rn   93 (100)
T PRK09720         49 SPEMKDFRHGFDILVGQIDDALKLANEGKVKEAQAAAEQLKTTRN   93 (100)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            34555666666666554   5569999999999988777766654

>PRK06835 DNA replication protein DnaC; Validated

Probab=87.34  E-value=3.6  Score=32.48  Aligned_cols=66  Identities=17%  Similarity=0.252  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhccccchhhh
Q psy2248          17 QITLLSEKINNLVSEAERVGMEGS---VEKAQGLMKLCDQLKEEREMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCG   91 (102)
Q Consensus        17 ~i~~l~~~I~~ll~eaE~LGeeG~---VdeA~~l~~~ve~Lk~ek~~l~~~~~~~~~~~~~~~~~~~~qkl~VCeVCG   91 (102)
                      +|.+|+.+|..+--+.-...-.|+   -+.-..+-+++..|+.+|..|-....   ++      ...-..-..|+.|+
T Consensus        37 ~~~~id~~i~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~lL~~~g---~~------~dyl~~~y~Cp~C~  105 (329)
T PRK06835         37 EIAEIDDEIAKLGIKLSRAILKNPDKKEETLKELKEKITDLRVKKAELLVSNG---YP------PDYLEMKYTCPKCK  105 (329)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHcC---CC------hhhcCCCCCCCCCC
Confidence            456788888877555555444555   44556777888888888888765431   11      11122235799997

>COG3783 CybC Soluble cytochrome b562 [Energy production and conversion]

Probab=81.72  E-value=3.2  Score=27.80  Aligned_cols=27  Identities=19%  Similarity=0.423  Sum_probs=22.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHH
Q psy2248          30 SEAERVGMEGSVEKAQGLMKLCDQLKE   56 (102)
Q Consensus        30 ~eaE~LGeeG~VdeA~~l~~~ve~Lk~   56 (102)
                      .++..|..+|++++|......+..++.
T Consensus        67 D~a~klaqeGnl~eAKaaak~l~d~Rn   93 (100)
T COG3783          67 DKADKLAQEGNLDEAKAAAKTLKDTRN   93 (100)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            567789999999999999888877753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	102
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	92.37
1x0t_A	120	Ribonuclease P protein component 4; pyrococcus hor	82.57

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=92.37  E-value=0.54  Score=29.95  Aligned_cols=12  Identities=42%  Similarity=0.780  Sum_probs=9.2

Q ss_pred             cccchhhhhhhh
Q psy2248          84 MEVCTVCGAFLI   95 (102)
Q Consensus        84 l~VCeVCGA~Ls   95 (102)
                      -.+|+|||.-+.
T Consensus        47 g~~CPvCgs~l~   58 (112)
T 1l8d_A           47 KGKCPVCGRELT   58 (112)
T ss_dssp             SEECTTTCCEEC
T ss_pred             CCCCCCCCCcCC
Confidence            468999998654

>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B

Probab=82.57  E-value=5.9  Score=25.92  Aligned_cols=65  Identities=25%  Similarity=0.389  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhccccchhhhhhhhccc
Q psy2248          19 TLLSEKINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEEREMLRKQNDNNHWSQTVELAAAQEKQMEVCTVCGAFLIVGD   98 (102)
Q Consensus        19 ~~l~~~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~ek~~l~~~~~~~~~~~~~~~~~~~~qkl~VCeVCGA~Ls~~D   98 (102)
                      ....++|+-|..-|..+ ..++.+-|-.++.....+-.+ ..+               ...+.-+-.+|.-||.||+-+-
T Consensus        17 ~ia~~Ri~~L~~~A~~~-~~~~p~lSr~Y~~~~~~is~k-~~i---------------rlp~~~KR~~Ck~C~s~LiPG~   79 (120)
T 1x0t_A           17 KIAIERIDTLFTLAERV-ARYSPDLAKRYVELALEIQKK-AKV---------------KIPRKWKRRYCKRCHTFLIPGV   79 (120)
T ss_dssp             HHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHH-HTC---------------CCCTTTTTSBCTTTCCBCCBTT
T ss_pred             HHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHH-hcc---------------CCCHHHHHHhccCCCCEeECCC
Confidence            45577999999999988 678888888888777555321 111               1123456789999999999776


Q ss_pred             cc
Q psy2248          99 AQ  100 (102)
Q Consensus        99 ~d  100 (102)
                      |-
T Consensus        80 t~   81 (120)
T 1x0t_A           80 NA   81 (120)
T ss_dssp             TE
T ss_pred             ce
Confidence            53

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	102
d256ba_	106	Cytochrome b562 {Escherichia coli [TaxId: 562]}	93.78
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	83.36
d1pfva3	35	Methionyl-tRNA synthetase (MetRS), Zn-domain {Esch	81.98
d1ak2a2	30	Microbial and mitochondrial ADK, insert "zinc fing	80.26

>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Cytochromes
family: Cytochrome b562
domain: Cytochrome b562
species: Escherichia coli [TaxId: 562]

Probab=93.78  E-value=0.057  Score=33.59  Aligned_cols=34  Identities=18%  Similarity=0.264  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q psy2248          24 KINNLVSEAERVGMEGSVEKAQGLMKLCDQLKEE   57 (102)
Q Consensus        24 ~I~~ll~eaE~LGeeG~VdeA~~l~~~ve~Lk~e   57 (102)
                      ++..++..++.|.++|+.++|..++.++..++.+
T Consensus        67 ~L~~~ld~i~~la~~G~l~eAk~~l~~l~~~r~~  100 (106)
T d256ba_          67 ILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNA  100 (106)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            4677788999999999999999999999999764

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.36  E-value=0.077  Score=25.08  Aligned_cols=14  Identities=36%  Similarity=0.748  Sum_probs=11.7

Q ss_pred             cchhhhhhhhcccc
Q psy2248          86 VCTVCGAFLIVGDA   99 (102)
Q Consensus        86 VCeVCGA~Ls~~D~   99 (102)
                      -|+|||...|+-|.
T Consensus         3 kc~~c~kcfsrkdk   16 (26)
T d2dmda2           3 KCEVCGKCFSRKDK   16 (26)
T ss_dssp             CBTTTTBCCCCHHH
T ss_pred             ccchhhhHhcchhH
Confidence            59999998888774

>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Methionyl-tRNA synthetase (MetRS), Zn-domain
family: Methionyl-tRNA synthetase (MetRS), Zn-domain
domain: Methionyl-tRNA synthetase (MetRS), Zn-domain
species: Escherichia coli [TaxId: 562]

Probab=81.98  E-value=0.13  Score=26.26  Aligned_cols=16  Identities=31%  Similarity=0.551  Sum_probs=12.1

Q ss_pred             ccccchhhhhhhhccc
Q psy2248          83 QMEVCTVCGAFLIVGD   98 (102)
Q Consensus        83 kl~VCeVCGA~Ls~~D   98 (102)
                      .=--||.||+.+...|
T Consensus        14 ~GDqCe~CG~~~~p~e   29 (35)
T d1pfva3          14 YGDNCEVCGATYSPTE   29 (35)
T ss_dssp             ETTBCTTTCCBCCGGG
T ss_pred             ccccHHHcCCcCCHHH
Confidence            3356999999987665

>d1ak2a2 g.41.2.1 (A:147-176) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Microbial and mitochondrial ADK, insert "zinc finger" domain
family: Microbial and mitochondrial ADK, insert "zinc finger" domain
domain: Microbial and mitochondrial ADK, insert "zinc finger" domain
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=80.26  E-value=0.14  Score=25.22  Aligned_cols=16  Identities=25%  Similarity=0.175  Sum_probs=12.4

Q ss_pred             hhhccccchhhhhhhh
Q psy2248          80 QEKQMEVCTVCGAFLI   95 (102)
Q Consensus        80 ~~qkl~VCeVCGA~Ls   95 (102)
                      +-+.--|||+||.-|+
T Consensus        13 PPk~~g~cD~cg~~L~   28 (30)
T d1ak2a2          13 PPKEPMKDDITGEPLI   28 (30)
T ss_dssp             CCSSTTBCTTTCCBCE
T ss_pred             CCCCCCccCCCCCCcc
Confidence            4466789999998765