Psyllid ID: psy2263

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
MSNIYPSLEDMKYHQMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVYHHMMN
cccccccccccccccEEEEEEEEcccccccEEEEEccccEEEEEEccccHHHHcccccccEEEEEccEEcccccHHHHHHHHHcccccEEEEEEEccccEEEEEEccccccccEEEEcccccccccccccccccccccccEEEEEcccEEEEEEcccccccccEEccEEEEEEEcccHHHHcccccccEEEEEccEEcccccHHHHHHHHHHcccEEEEEEEccHHHHHccc
cccccccHHHHHHcccEEEEEcccccccccEEEEEEccEEEEEEEccccccHHHccccccEEEEEccEEcccccHHHHHHHHHHcccccEEEEEEcccccEEEEEEccccccccEEEEccEEEEEccccHHHHccccccEEEEEEccEEcccccHHHHHHHcEEEEccEEEEEEcccHHHHHcccccEEEEEEccEEcccccHHHHHHHHHHcccEEEEEEcEccHHHHHcc
msniypsledmkyhQMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVqegspaalvglrfgdqilqvngktvagsnmHQVHALLrncpvnnisivvrdrpfernvtlhkdsaghvgfqfkrGQIIRLVKEssasrnglltdhhilevngqnvvglkndsaghvgfqfkrGQIIRLVKEssasrnglltdhhilevngqnvvglkDKEIREIVEKApcvinltimpsYVYHHMMN
MSNIYPSLEDMKYHQMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFERNVTlhkdsaghvgfqfkrGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNglltdhhilevngqnvvglkDKEIREIvekapcvinltimpsyvyHHMMN
MSNIYPSLEDMKYHQMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVYHHMMN
**********MKYHQMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVYHH***
****YPS***MKYHQMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRP***********************************************NGQNVVGL***SA**VGFQFKRGQIIRLVKE*****NGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVYHHMMN
MSNIYPSLEDMKYHQMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVYHHMMN
***IYPSLEDMKYHQMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVYHHMMN
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSNIYPSLEDMKYHQMTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQNVVGLKDKEIREIVEKAPCVINLTIMPSYVYHHMMN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query232 2.2.26 [Sep-21-2011]
O08992299 Syntenin-1 OS=Mus musculu yes N/A 0.715 0.555 0.439 2e-47
Q9JI92300 Syntenin-1 OS=Rattus norv yes N/A 0.715 0.553 0.434 5e-47
Q99JZ0292 Syntenin-2 OS=Mus musculu no N/A 0.715 0.568 0.439 8e-46
O00560298 Syntenin-1 OS=Homo sapien yes N/A 0.715 0.557 0.420 4e-45
Q9H190292 Syntenin-2 OS=Homo sapien no N/A 0.719 0.571 0.432 1e-44
Q8SQG9316 Na(+)/H(+) exchange regul no N/A 0.715 0.525 0.299 1e-08
Q9JHL1337 Na(+)/H(+) exchange regul no N/A 0.741 0.510 0.313 2e-08
Q15599337 Na(+)/H(+) exchange regul no N/A 0.724 0.498 0.292 3e-08
Q920G2337 Na(+)/H(+) exchange regul no N/A 0.741 0.510 0.313 6e-08
Q865P3 518 Na(+)/H(+) exchange regul no N/A 0.711 0.318 0.287 2e-07
>sp|O08992|SDCB1_MOUSE Syntenin-1 OS=Mus musculus GN=Sdcbp PE=2 SV=1 Back     alignment and function desciption
 Score =  188 bits (478), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/214 (43%), Positives = 129/214 (60%), Gaps = 48/214 (22%)

Query: 18  KLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQ 77
           ++ LCKD  GKIGLR+ +I  G+FV LVQ  SPA+LVGLRFGDQ+LQ+NG+  AG +  +
Sbjct: 115 EVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDK 174

Query: 78  VHALLRNCPVNNISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLL 137
            H +L+      I++ +RDRPFER VT+HKDS+GHVGF FK G+I  +VK+SSA+RNGLL
Sbjct: 175 AHKVLKQAFGEKITMTIRDRPFERTVTMHKDSSGHVGFIFKSGKITSIVKDSSAARNGLL 234

Query: 138 TDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQN 197
           TDHHI E+NGQNV+GLK                                           
Sbjct: 235 TDHHICEINGQNVIGLK------------------------------------------- 251

Query: 198 VVGLKDKEIREIVEKAPCVINLTIMPSYVYHHMM 231
                D +I +I+  A  V+ +TIMP++++ H++
Sbjct: 252 -----DAQIADILSTAGTVVTITIMPTFIFEHII 280
Seems to function as an adapter protein. In adherens junctions may function to couple syndecans to cytoskeletal proteins or signaling components. Seems to couple transcription factor SOX4 to the IL-5 receptor (IL5RA). May also play a role in vesicular trafficking. Seems to be required for the targeting of TGFA to the cell surface in the early secretory pathway.
Mus musculus (taxid: 10090)
>sp|Q9JI92|SDCB1_RAT Syntenin-1 OS=Rattus norvegicus GN=Sdcbp PE=1 SV=1 Back     alignment and function description
>sp|Q99JZ0|SDCB2_MOUSE Syntenin-2 OS=Mus musculus GN=Sdcbp2 PE=2 SV=1 Back     alignment and function description
>sp|O00560|SDCB1_HUMAN Syntenin-1 OS=Homo sapiens GN=SDCBP PE=1 SV=1 Back     alignment and function description
>sp|Q9H190|SDCB2_HUMAN Syntenin-2 OS=Homo sapiens GN=SDCBP2 PE=2 SV=2 Back     alignment and function description
>sp|Q8SQG9|NHRF2_RABIT Na(+)/H(+) exchange regulatory cofactor NHE-RF2 OS=Oryctolagus cuniculus GN=SLC9A3R2 PE=1 SV=1 Back     alignment and function description
>sp|Q9JHL1|NHRF2_MOUSE Na(+)/H(+) exchange regulatory cofactor NHE-RF2 OS=Mus musculus GN=Slc9a3r2 PE=1 SV=2 Back     alignment and function description
>sp|Q15599|NHRF2_HUMAN Na(+)/H(+) exchange regulatory cofactor NHE-RF2 OS=Homo sapiens GN=SLC9A3R2 PE=1 SV=2 Back     alignment and function description
>sp|Q920G2|NHRF2_RAT Na(+)/H(+) exchange regulatory cofactor NHE-RF2 OS=Rattus norvegicus GN=Slc9a3r2 PE=1 SV=1 Back     alignment and function description
>sp|Q865P3|NHRF3_RABIT Na(+)/H(+) exchange regulatory cofactor NHE-RF3 OS=Oryctolagus cuniculus GN=PDZK1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query232
332380580322 syntenin [Penaeus monodon] 0.715 0.515 0.509 3e-55
332380576322 syntenin [Penaeus monodon] 0.702 0.506 0.516 4e-55
332380578322 syntenin [Penaeus monodon] 0.715 0.515 0.5 9e-54
91090864281 PREDICTED: similar to syndecan binding p 0.715 0.590 0.5 2e-53
13161180233 syntenin [Penaeus monodon] 0.715 0.712 0.5 6e-53
357609324294 syndecan binding protein [Danaus plexipp 0.793 0.625 0.459 6e-52
389615303284 unknown unsecreted protein [Papilio poly 0.719 0.588 0.469 1e-51
389608797284 unknown unsecreted protein [Papilio xuth 0.719 0.588 0.474 1e-51
332021083306 Syntenin-1 [Acromyrmex echinatior] 0.715 0.542 0.485 2e-51
380022620301 PREDICTED: syntenin-1-like [Apis florea] 0.586 0.451 0.698 1e-50
>gi|332380580|gb|AEE65457.1| syntenin [Penaeus monodon] Back     alignment and taxonomy information
 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 109/214 (50%), Positives = 137/214 (64%), Gaps = 48/214 (22%)

Query: 18  KLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQ 77
           ++ LCKD  GK+G+RV AI++GVFVCLV++ SPAAL GLRFGDQILQ+N + VAG +M +
Sbjct: 139 EITLCKDSEGKVGMRVKAINKGVFVCLVKKNSPAALAGLRFGDQILQINSENVAGYSMEK 198

Query: 78  VHALLRNCPVNNISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLL 137
           VH +L+  P N IS+ +RDRPFER VTLHKDS GH+GFQF+ G+I  LVK+SSA+RNGLL
Sbjct: 199 VHDMLKKSPTNGISLAIRDRPFERTVTLHKDSTGHIGFQFRDGEITALVKDSSAARNGLL 258

Query: 138 TDHHILEVNGQNVVGLKNDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDHHILEVNGQN 197
           TDHH+LEVNGQNVVGLK                                           
Sbjct: 259 TDHHLLEVNGQNVVGLK------------------------------------------- 275

Query: 198 VVGLKDKEIREIVEKAPCVINLTIMPSYVYHHMM 231
                DKE+  I+ +   V+ +TIMPS+VY HMM
Sbjct: 276 -----DKEVSAIINECGQVVTVTIMPSFVYKHMM 304

Source: Penaeus monodon

Species: Penaeus monodon

Genus: Penaeus

Family: Penaeidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|332380576|gb|AEE65455.1| syntenin [Penaeus monodon] Back     alignment and taxonomy information
>gi|332380578|gb|AEE65456.1| syntenin [Penaeus monodon] Back     alignment and taxonomy information
>gi|91090864|ref|XP_972815.1| PREDICTED: similar to syndecan binding protein [Tribolium castaneum] gi|270013239|gb|EFA09687.1| hypothetical protein TcasGA2_TC011815 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|13161180|gb|AAK13497.1| syntenin [Penaeus monodon] Back     alignment and taxonomy information
>gi|357609324|gb|EHJ66394.1| syndecan binding protein [Danaus plexippus] Back     alignment and taxonomy information
>gi|389615303|dbj|BAM20633.1| unknown unsecreted protein [Papilio polytes] Back     alignment and taxonomy information
>gi|389608797|dbj|BAM18010.1| unknown unsecreted protein [Papilio xuthus] Back     alignment and taxonomy information
>gi|332021083|gb|EGI61470.1| Syntenin-1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|380022620|ref|XP_003695138.1| PREDICTED: syntenin-1-like [Apis florea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query232
MGI|MGI:1337026299 Sdcbp "syndecan binding protei 0.594 0.461 0.608 2e-45
RGD|621497300 Sdcbp "syndecan binding protei 0.594 0.46 0.601 2.6e-45
UNIPROTKB|I3LRQ4299 SDCBP2 "Uncharacterized protei 0.594 0.461 0.586 1.4e-44
MGI|MGI:2385156292 Sdcbp2 "syndecan binding prote 0.594 0.472 0.579 1.8e-44
UNIPROTKB|Q9H190292 SDCBP2 "Syntenin-2" [Homo sapi 0.594 0.472 0.565 2.9e-44
ZFIN|ZDB-GENE-081104-57307 sdcbp "syndecan binding protei 0.758 0.573 0.513 4.7e-44
RGD|1307709296 Sdcbp2 "syndecan binding prote 0.594 0.466 0.572 1.1e-42
ZFIN|ZDB-GENE-030131-3727299 sdcbp2 "syndecan binding prote 0.603 0.468 0.592 3.2e-42
UNIPROTKB|Q5ZHM8294 SDCBP "Uncharacterized protein 0.745 0.588 0.5 1.4e-41
UNIPROTKB|O00560298 SDCBP "Syntenin-1" [Homo sapie 0.620 0.483 0.562 1.7e-41
MGI|MGI:1337026 Sdcbp "syndecan binding protein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
 Score = 451 (163.8 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
 Identities = 84/138 (60%), Positives = 109/138 (78%)

Query:    18 KLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQ 77
             ++ LCKD  GKIGLR+ +I  G+FV LVQ  SPA+LVGLRFGDQ+LQ+NG+  AG +  +
Sbjct:   115 EVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDK 174

Query:    78 VHALLRNCPVNNISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLL 137
              H +L+      I++ +RDRPFER VT+HKDS+GHVGF FK G+I  +VK+SSA+RNGLL
Sbjct:   175 AHKVLKQAFGEKITMTIRDRPFERTVTMHKDSSGHVGFIFKSGKITSIVKDSSAARNGLL 234

Query:   138 TDHHILEVNGQNVVGLKN 155
             TDHHI E+NGQNV+GLK+
Sbjct:   235 TDHHICEINGQNVIGLKD 252
GO:0001948 "glycoprotein binding" evidence=ISO
GO:0005109 "frizzled binding" evidence=ISO
GO:0005137 "interleukin-5 receptor binding" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0005737 "cytoplasm" evidence=ISO
GO:0005886 "plasma membrane" evidence=ISO
GO:0005895 "interleukin-5 receptor complex" evidence=IMP
GO:0007265 "Ras protein signal transduction" evidence=IPI
GO:0008022 "protein C-terminus binding" evidence=ISO
GO:0016020 "membrane" evidence=IEA
GO:0019838 "growth factor binding" evidence=ISO
GO:0042043 "neurexin family protein binding" evidence=ISO
GO:0042327 "positive regulation of phosphorylation" evidence=ISO
GO:0042803 "protein homodimerization activity" evidence=ISO
GO:0045545 "syndecan binding" evidence=ISO
GO:0046875 "ephrin receptor binding" evidence=ISO
GO:0046982 "protein heterodimerization activity" evidence=ISO
GO:0047485 "protein N-terminus binding" evidence=ISO
GO:0050839 "cell adhesion molecule binding" evidence=ISO
GO:0070062 "extracellular vesicular exosome" evidence=ISO
RGD|621497 Sdcbp "syndecan binding protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|I3LRQ4 SDCBP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2385156 Sdcbp2 "syndecan binding protein (syntenin) 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H190 SDCBP2 "Syntenin-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-081104-57 sdcbp "syndecan binding protein (syntenin)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1307709 Sdcbp2 "syndecan binding protein (syntenin) 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3727 sdcbp2 "syndecan binding protein (syntenin) 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZHM8 SDCBP "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O00560 SDCBP "Syntenin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query232
cd0099282 cd00992, PDZ_signaling, PDZ domain found in a vari 6e-14
cd0013670 cd00136, PDZ, PDZ domain, also called DHR (Dlg hom 2e-13
smart0022885 smart00228, PDZ, Domain present in PSD-95, Dlg, an 1e-10
cd0098885 cd00988, PDZ_CTP_protease, PDZ domain of C-termina 3e-10
COG0793406 COG0793, Prc, Periplasmic protease [Cell envelope 3e-07
cd0099282 cd00992, PDZ_signaling, PDZ domain found in a vari 4e-07
pfam0059580 pfam00595, PDZ, PDZ domain (Also known as DHR or G 4e-07
smart0022885 smart00228, PDZ, Domain present in PSD-95, Dlg, an 3e-06
cd0098979 cd00989, PDZ_metalloprotease, PDZ domain of bacter 3e-06
cd0099282 cd00992, PDZ_signaling, PDZ domain found in a vari 4e-06
TIGR02037428 TIGR02037, degP_htrA_DO, periplasmic serine protea 2e-05
cd0098790 cd00987, PDZ_serine_protease, PDZ domain of tryspi 2e-05
PRK10942473 PRK10942, PRK10942, serine endoprotease; Provision 3e-05
smart0022885 smart00228, PDZ, Domain present in PSD-95, Dlg, an 7e-05
TIGR00225334 TIGR00225, prc, C-terminal peptidase (prc) 1e-04
pfam1318081 pfam13180, PDZ_2, PDZ domain 3e-04
TIGR02037428 TIGR02037, degP_htrA_DO, periplasmic serine protea 6e-04
PLN00049389 PLN00049, PLN00049, carboxyl-terminal processing p 0.001
PRK10139455 PRK10139, PRK10139, serine endoprotease; Provision 0.004
COG0265347 COG0265, DegQ, Trypsin-like serine proteases, typi 0.004
>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements Back     alignment and domain information 
 Score = 64.5 bits (158), Expect = 6e-14
 Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 21 LCKDIHGKIGLRVAAIHE---GVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQ 77
          L KD  G +G  +    +   G+FV  V+ G PA   GLR GD+IL+VNG +V G    +
Sbjct: 6  LRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEE 65

Query: 78 VHALLRNCPVNNISIVVR 95
             LL+N   + +++ VR
Sbjct: 66 AVELLKNSG-DEVTLTVR 82

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82
>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif) Back     alignment and domain information
>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2 Back     alignment and domain information
>gnl|CDD|238488 cd00988, PDZ_CTP_protease, PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts Back     alignment and domain information
>gnl|CDD|223864 COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements Back     alignment and domain information
>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF) Back     alignment and domain information
>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2 Back     alignment and domain information
>gnl|CDD|238489 cd00989, PDZ_metalloprotease, PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms Back     alignment and domain information
>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements Back     alignment and domain information
>gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ family Back     alignment and domain information
>gnl|CDD|238487 cd00987, PDZ_serine_protease, PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis Back     alignment and domain information
>gnl|CDD|236802 PRK10942, PRK10942, serine endoprotease; Provisional Back     alignment and domain information
>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2 Back     alignment and domain information
>gnl|CDD|232883 TIGR00225, prc, C-terminal peptidase (prc) Back     alignment and domain information
>gnl|CDD|221961 pfam13180, PDZ_2, PDZ domain Back     alignment and domain information
>gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ family Back     alignment and domain information
>gnl|CDD|177681 PLN00049, PLN00049, carboxyl-terminal processing protease; Provisional Back     alignment and domain information
>gnl|CDD|182262 PRK10139, PRK10139, serine endoprotease; Provisional Back     alignment and domain information
>gnl|CDD|223343 COG0265, DegQ, Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 232
KOG3209|consensus984 99.94
KOG3209|consensus 984 99.88
KOG3580|consensus 1027 99.88
TIGR02037428 degP_htrA_DO periplasmic serine protease, Do/DeqQ 99.83
PRK10139455 serine endoprotease; Provisional 99.82
PRK10942473 serine endoprotease; Provisional 99.81
PRK10779 449 zinc metallopeptidase RseP; Provisional 99.74
KOG3605|consensus829 99.73
TIGR00054 420 RIP metalloprotease RseP. A model that detects fra 99.66
PF1318082 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_ 99.52
PF0059581 PDZ: PDZ domain (Also known as DHR or GLGF) Coordi 99.51
PF0059581 PDZ: PDZ domain (Also known as DHR or GLGF) Coordi 99.39
cd0098885 PDZ_CTP_protease PDZ domain of C-terminal processi 99.38
cd0013670 PDZ PDZ domain, also called DHR (Dlg homologous re 99.35
cd0099282 PDZ_signaling PDZ domain found in a variety of Eum 99.25
cd0098979 PDZ_metalloprotease PDZ domain of bacterial and pl 99.25
smart0022885 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als 99.21
cd0099080 PDZ_glycyl_aminopeptidase PDZ domain associated wi 99.17
KOG1421|consensus 955 99.15
cd0099179 PDZ_archaeal_metalloprotease PDZ domain of archaea 99.13
PF1318082 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_ 99.12
cd0013670 PDZ PDZ domain, also called DHR (Dlg homologous re 99.11
cd0099282 PDZ_signaling PDZ domain found in a variety of Eum 99.07
cd0098790 PDZ_serine_protease PDZ domain of tryspin-like ser 99.05
KOG3580|consensus 1027 99.04
TIGR03279 433 cyano_FeS_chp putative FeS-containing Cyanobacteri 98.98
smart0022885 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als 98.96
PLN00049389 carboxyl-terminal processing protease; Provisional 98.95
KOG3550|consensus207 98.95
cd0098679 PDZ_LON_protease PDZ domain of ATP-dependent LON s 98.94
TIGR00225334 prc C-terminal peptidase (prc). A C-terminal pepti 98.94
cd0098885 PDZ_CTP_protease PDZ domain of C-terminal processi 98.94
cd0099179 PDZ_archaeal_metalloprotease PDZ domain of archaea 98.91
cd0098790 PDZ_serine_protease PDZ domain of tryspin-like ser 98.91
COG0793406 Prc Periplasmic protease [Cell envelope biogenesis 98.9
PRK10898353 serine endoprotease; Provisional 98.89
TIGR02038351 protease_degS periplasmic serine pepetdase DegS. T 98.85
TIGR02860402 spore_IV_B stage IV sporulation protein B. SpoIVB, 98.8
PF04495138 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: 98.79
cd0098979 PDZ_metalloprotease PDZ domain of bacterial and pl 98.78
KOG3553|consensus124 98.77
TIGR01713259 typeII_sec_gspC general secretion pathway protein 98.76
KOG3550|consensus207 98.76
cd0099080 PDZ_glycyl_aminopeptidase PDZ domain associated wi 98.72
TIGR00054420 RIP metalloprotease RseP. A model that detects fra 98.71
KOG3551|consensus 506 98.71
PRK11186 667 carboxy-terminal protease; Provisional 98.68
PRK10779449 zinc metallopeptidase RseP; Provisional 98.66
cd0098679 PDZ_LON_protease PDZ domain of ATP-dependent LON s 98.65
KOG3553|consensus124 98.59
PF1468588 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6 98.57
TIGR02037428 degP_htrA_DO periplasmic serine protease, Do/DeqQ 98.57
KOG3551|consensus 506 98.57
PRK10139455 serine endoprotease; Provisional 98.56
KOG3549|consensus 505 98.54
PRK10942473 serine endoprotease; Provisional 98.48
TIGR02038351 protease_degS periplasmic serine pepetdase DegS. T 98.46
KOG3606|consensus358 98.43
PF1281278 PDZ_1: PDZ-like domain 98.43
KOG3549|consensus 505 98.4
KOG0609|consensus 542 98.38
TIGR00225 334 prc C-terminal peptidase (prc). A C-terminal pepti 98.38
PRK10898353 serine endoprotease; Provisional 98.36
TIGR01713259 typeII_sec_gspC general secretion pathway protein 98.35
KOG3651|consensus 429 98.34
PLN00049 389 carboxyl-terminal processing protease; Provisional 98.33
KOG3606|consensus358 98.32
KOG3834|consensus 462 98.31
KOG1892|consensus 1629 98.29
KOG3552|consensus 1298 98.28
KOG3129|consensus231 98.2
KOG1892|consensus 1629 98.19
KOG3571|consensus 626 98.17
COG0793 406 Prc Periplasmic protease [Cell envelope biogenesis 98.16
KOG3651|consensus 429 98.11
KOG3552|consensus 1298 98.07
COG0265347 DegQ Trypsin-like serine proteases, typically peri 98.06
COG3975558 Predicted protease with the C-terminal PDZ domain 97.99
KOG3571|consensus 626 97.97
KOG3542|consensus 1283 97.95
PRK11186 667 carboxy-terminal protease; Provisional 97.94
KOG1421|consensus955 97.92
TIGR03279 433 cyano_FeS_chp putative FeS-containing Cyanobacteri 97.9
PF1468588 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6 97.84
TIGR02860 402 spore_IV_B stage IV sporulation protein B. SpoIVB, 97.81
PF04495138 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: 97.81
PRK09681276 putative type II secretion protein GspC; Provision 97.75
KOG1320|consensus473 97.75
KOG3938|consensus334 97.74
COG0265347 DegQ Trypsin-like serine proteases, typically peri 97.54
KOG4371|consensus1332 97.52
COG3480342 SdrC Predicted secreted protein containing a PDZ d 97.49
KOG3542|consensus 1283 97.42
PRK09681276 putative type II secretion protein GspC; Provision 97.36
KOG0609|consensus 542 97.34
KOG3605|consensus829 97.07
KOG1320|consensus473 97.05
KOG3129|consensus231 97.05
KOG0606|consensus 1205 97.0
COG3975558 Predicted protease with the C-terminal PDZ domain 96.97
COG3031275 PulC Type II secretory pathway, component PulC [In 96.92
KOG3532|consensus 1051 96.89
KOG3532|consensus 1051 96.71
KOG3834|consensus 462 96.64
KOG0606|consensus 1205 96.58
COG3031275 PulC Type II secretory pathway, component PulC [In 96.58
KOG3938|consensus 334 96.56
PF1281278 PDZ_1: PDZ-like domain 96.35
KOG1738|consensus 638 95.1
KOG1738|consensus 638 95.01
COG3480 342 SdrC Predicted secreted protein containing a PDZ d 94.52
KOG4407|consensus 1973 94.48
COG0750375 Predicted membrane-associated Zn-dependent proteas 94.3
COG0750 375 Predicted membrane-associated Zn-dependent proteas 91.63
PF11874183 DUF3394: Domain of unknown function (DUF3394); Int 91.51
KOG2921|consensus 484 89.56
PF11874183 DUF3394: Domain of unknown function (DUF3394); Int 89.13
KOG4371|consensus1332 88.1
KOG4407|consensus 1973 87.05
KOG2921|consensus484 81.25
>KOG3209|consensus Back     alignment and domain information 
Probab=99.94  E-value=3.6e-25  Score=191.54  Aligned_cols=214  Identities=25%  Similarity=0.437  Sum_probs=177.4

Q ss_pred             cccccceEEEEEEeeCCCccceEEeecC---CceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHHhhC
Q psy2263          10 DMKYHQMTKLFLCKDIHGKIGLRVAAIH---EGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALLRNC   85 (232)
Q Consensus        10 ~~~~~~~~~~~l~~~~~~~lGi~~~~~~---~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l~~~   85 (232)
                      +...+.--.|.|.+.+.| |||.+-++.   ..++|..+.+.+.|+..| |+.||.|+.|||.++.+.+|.+++.+|..+
T Consensus       644 n~~pdk~ldV~L~rkesG-FGFRiLGG~ep~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~A  722 (984)
T KOG3209|consen  644 NQKPDKELDVFLRRKESG-FGFRILGGDEPGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAA  722 (984)
T ss_pred             ccCCccceeEEEEeeccc-cceEEecCCCCCCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHH
Confidence            334444455778887666 999998754   569999999999999988 999999999999999999999999988765


Q ss_pred             C-CCeEEEEEecCC----------------ceeeeEeecCCCCeeCeEEeC-----Ce-EEEEecCChhhhcC-CCCCCE
Q psy2263          86 P-VNNISIVVRDRP----------------FERNVTLHKDSAGHVGFQFKR-----GQ-IIRLVKESSASRNG-LLTDHH  141 (232)
Q Consensus        86 ~-~~~v~l~v~r~~----------------~~~~v~l~~~~~~~lg~~~~~-----~~-~~~~~~~~~a~~~g-l~~gd~  141 (232)
                      . ...+.|+|+|+-                .+..|.+++..+..+||-+..     +. +..+.++|||++-| |+.||+
T Consensus       723 ArnghV~LtVRRkv~~~~~~rsp~~s~~~~~~yDV~lhR~ENeGFGFVi~sS~~kp~sgiGrIieGSPAdRCgkLkVGDr  802 (984)
T KOG3209|consen  723 ARNGHVNLTVRRKVRTGPARRSPRNSAAPSGPYDVVLHRKENEGFGFVIMSSQNKPESGIGRIIEGSPADRCGKLKVGDR  802 (984)
T ss_pred             HhcCceEEEEeeeeeeccccCCcccccCCCCCeeeEEecccCCceeEEEEecccCCCCCccccccCChhHhhccccccce
Confidence            5 678999998821                246677888777778887642     22 67889999998777 999999


Q ss_pred             EEEECCeEeecccc------------------------------------------------------------------
Q psy2263         142 ILEVNGQNVVGLKN------------------------------------------------------------------  155 (232)
Q Consensus       142 i~~v~g~~~~~~~~------------------------------------------------------------------  155 (232)
                      |+.|||+++-+++|                                                                  
T Consensus       803 ilAVNG~sI~~lsHadiv~LIKdaGlsVtLtIip~ee~~~~~~~~sa~~~s~~t~~~~~~q~~glp~~~~s~~~~~pqpd  882 (984)
T KOG3209|consen  803 ILAVNGQSILNLSHADIVSLIKDAGLSVTLTIIPPEEAGPPTSMTSAEKQSPFTQNGPYEQQYGLPGPRPSVYEEHPQPD  882 (984)
T ss_pred             EEEecCeeeeccCchhHHHHHHhcCceEEEEEcChhccCCCCCCcchhhcCcccccCCHhHccCCCCCCccccccCCCCc
Confidence            99999999998877                                                                  


Q ss_pred             ---------------------cC--CCccceEEecC-------cEEEEccCChhhhCC-CCCCCEEEEECCeEcCCCCHH
Q psy2263         156 ---------------------DS--AGHVGFQFKRG-------QIIRLVKESSASRNG-LLTDHHILEVNGQNVVGLKDK  204 (232)
Q Consensus       156 ---------------------~~--~~~~g~~~~~g-------~v~~v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~  204 (232)
                                           .+  .+.+||++++|       +|.++..++||.+.| ++.||+|++|||+++++++|+
T Consensus       883 t~~~~~~~~r~~qn~~~~~VelErG~kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~  962 (984)
T KOG3209|consen  883 TFQGLSINDRMSQNGDLYTVELERGAKGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHD  962 (984)
T ss_pred             cccceeccccccccCCeeEEEeeccccccceEeecccccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHH
Confidence                                 01  34566777766       567799999999999 999999999999999999999


Q ss_pred             HHHHHHHhCCCeEEEEEeCC
Q psy2263         205 EIREIVEKAPCVINLTIMPS  224 (232)
Q Consensus       205 ~~~~~l~~~~~~~~l~v~r~  224 (232)
                      .+.+++++.+..+.|.+.|+
T Consensus       963 rAIelIk~gg~~vll~Lr~g  982 (984)
T KOG3209|consen  963 RAIELIKQGGRRVLLLLRRG  982 (984)
T ss_pred             HHHHHHHhCCeEEEEEeccC
Confidence            99999999999998887765

>KOG3209|consensus Back     alignment and domain information
>KOG3580|consensus Back     alignment and domain information
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family Back     alignment and domain information
>PRK10139 serine endoprotease; Provisional Back     alignment and domain information
>PRK10942 serine endoprotease; Provisional Back     alignment and domain information
>PRK10779 zinc metallopeptidase RseP; Provisional Back     alignment and domain information
>KOG3605|consensus Back     alignment and domain information
>TIGR00054 RIP metalloprotease RseP Back     alignment and domain information
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C Back     alignment and domain information
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ] Back     alignment and domain information
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ] Back     alignment and domain information
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts Back     alignment and domain information
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif) Back     alignment and domain information
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements Back     alignment and domain information
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms Back     alignment and domain information
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2 Back     alignment and domain information
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases Back     alignment and domain information
>KOG1421|consensus Back     alignment and domain information
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms Back     alignment and domain information
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C Back     alignment and domain information
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif) Back     alignment and domain information
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements Back     alignment and domain information
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis Back     alignment and domain information
>KOG3580|consensus Back     alignment and domain information
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase Back     alignment and domain information
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2 Back     alignment and domain information
>PLN00049 carboxyl-terminal processing protease; Provisional Back     alignment and domain information
>KOG3550|consensus Back     alignment and domain information
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases Back     alignment and domain information
>TIGR00225 prc C-terminal peptidase (prc) Back     alignment and domain information
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts Back     alignment and domain information
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms Back     alignment and domain information
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis Back     alignment and domain information
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK10898 serine endoprotease; Provisional Back     alignment and domain information
>TIGR02038 protease_degS periplasmic serine pepetdase DegS Back     alignment and domain information
>TIGR02860 spore_IV_B stage IV sporulation protein B Back     alignment and domain information
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous Back     alignment and domain information
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms Back     alignment and domain information
>KOG3553|consensus Back     alignment and domain information
>TIGR01713 typeII_sec_gspC general secretion pathway protein C Back     alignment and domain information
>KOG3550|consensus Back     alignment and domain information
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases Back     alignment and domain information
>TIGR00054 RIP metalloprotease RseP Back     alignment and domain information
>KOG3551|consensus Back     alignment and domain information
>PRK11186 carboxy-terminal protease; Provisional Back     alignment and domain information
>PRK10779 zinc metallopeptidase RseP; Provisional Back     alignment and domain information
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases Back     alignment and domain information
>KOG3553|consensus Back     alignment and domain information
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A Back     alignment and domain information
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family Back     alignment and domain information
>KOG3551|consensus Back     alignment and domain information
>PRK10139 serine endoprotease; Provisional Back     alignment and domain information
>KOG3549|consensus Back     alignment and domain information
>PRK10942 serine endoprotease; Provisional Back     alignment and domain information
>TIGR02038 protease_degS periplasmic serine pepetdase DegS Back     alignment and domain information
>KOG3606|consensus Back     alignment and domain information
>PF12812 PDZ_1: PDZ-like domain Back     alignment and domain information
>KOG3549|consensus Back     alignment and domain information
>KOG0609|consensus Back     alignment and domain information
>TIGR00225 prc C-terminal peptidase (prc) Back     alignment and domain information
>PRK10898 serine endoprotease; Provisional Back     alignment and domain information
>TIGR01713 typeII_sec_gspC general secretion pathway protein C Back     alignment and domain information
>KOG3651|consensus Back     alignment and domain information
>PLN00049 carboxyl-terminal processing protease; Provisional Back     alignment and domain information
>KOG3606|consensus Back     alignment and domain information
>KOG3834|consensus Back     alignment and domain information
>KOG1892|consensus Back     alignment and domain information
>KOG3552|consensus Back     alignment and domain information
>KOG3129|consensus Back     alignment and domain information
>KOG1892|consensus Back     alignment and domain information
>KOG3571|consensus Back     alignment and domain information
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>KOG3651|consensus Back     alignment and domain information
>KOG3552|consensus Back     alignment and domain information
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only] Back     alignment and domain information
>KOG3571|consensus Back     alignment and domain information
>KOG3542|consensus Back     alignment and domain information
>PRK11186 carboxy-terminal protease; Provisional Back     alignment and domain information
>KOG1421|consensus Back     alignment and domain information
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase Back     alignment and domain information
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A Back     alignment and domain information
>TIGR02860 spore_IV_B stage IV sporulation protein B Back     alignment and domain information
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous Back     alignment and domain information
>PRK09681 putative type II secretion protein GspC; Provisional Back     alignment and domain information
>KOG1320|consensus Back     alignment and domain information
>KOG3938|consensus Back     alignment and domain information
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4371|consensus Back     alignment and domain information
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG3542|consensus Back     alignment and domain information
>PRK09681 putative type II secretion protein GspC; Provisional Back     alignment and domain information
>KOG0609|consensus Back     alignment and domain information
>KOG3605|consensus Back     alignment and domain information
>KOG1320|consensus Back     alignment and domain information
>KOG3129|consensus Back     alignment and domain information
>KOG0606|consensus Back     alignment and domain information
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only] Back     alignment and domain information
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3532|consensus Back     alignment and domain information
>KOG3532|consensus Back     alignment and domain information
>KOG3834|consensus Back     alignment and domain information
>KOG0606|consensus Back     alignment and domain information
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG3938|consensus Back     alignment and domain information
>PF12812 PDZ_1: PDZ-like domain Back     alignment and domain information
>KOG1738|consensus Back     alignment and domain information
>KOG1738|consensus Back     alignment and domain information
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG4407|consensus Back     alignment and domain information
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised Back     alignment and domain information
>KOG2921|consensus Back     alignment and domain information
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised Back     alignment and domain information
>KOG4371|consensus Back     alignment and domain information
>KOG4407|consensus Back     alignment and domain information
>KOG2921|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query232
1obz_A166 Crystal Structure Of The Complex Of The Pdz Tandem 3e-45
1obz_A166 Crystal Structure Of The Complex Of The Pdz Tandem 2e-23
1n99_A166 Crystal Structure Of The Pdz Tandem Of Human Synten 2e-44
1n99_A166 Crystal Structure Of The Pdz Tandem Of Human Synten 1e-22
1nte_A82 Crystal Structure Analysis Of The Second Pdz Domain 2e-20
1oby_A79 Crystal Structure Of The Complex Of Pdz2 Of Synteni 1e-18
1u3b_A185 Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFF 1e-07
1u3b_A185 Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFF 6e-05
2w4f_A97 Crystal Structure Of The First Pdz Domain Of Human 1e-05
2yuy_A126 Solution Structure Of Pdz Domain Of Rho Gtpase Acti 2e-05
1x5q_A110 Solution Structure Of The First Pdz Domain Of Scrib 3e-05
1y7n_A90 Solution Structure Of The Second Pdz Domain Of The 4e-05
2yt8_A94 Solution Structure Of The Pdz Domain Of Amyloid Bet 8e-05
3jxt_A104 Crystal Structure Of The Third Pdz Domain Of Sap-10 8e-05
1tp3_A119 Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv 9e-05
1um7_A113 Solution Structure Of The Third Pdz Domain Of Synap 1e-04
2he2_A102 Crystal Structure Of The 3rd Pdz Domain Of Human Di 1e-04
3i4w_A104 Crystal Structure Of The Third Pdz Domain Of Psd-95 2e-04
2xkx_A 721 Single Particle Analysis Of Psd-95 In Negative Stai 2e-04
3k82_A98 Crystal Structure Of The Third Pdz Domain Of Psd-95 2e-04
1be9_A119 The Third Pdz Domain From The Synaptic Protein Psd- 2e-04
2ocs_A88 The Crystal Structure Of The First Pdz Domain Of Hu 2e-04
1u39_A80 Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFF 3e-04
3ngh_A106 Molecular Analysis Of The Interaction Of The Hdl Re 4e-04
2edz_A114 Solution Structures Of The Pdz Domain Of Mus Muscul 5e-04
3diw_A124 C-Terminal Beta-Catenin Bound Tip-1 Structure Lengt 5e-04
3shw_A 468 Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule 5e-04
2vz5_A139 Structure Of The Pdz Domain Of Tax1 (Human T-Cell L 5e-04
3gj9_A124 Crystal Structure Of Tip-1 In Complex With C-Termin 6e-04
3dj3_A113 Crystal Structure Of C-Terminal Truncated Tip-1 (6- 6e-04
4e3b_A102 Crystal Structure Of Tax-Interacting Protein-1 (Tip 6e-04
3sfj_A104 Crystal Structure Of Tax-Interacting Protein-1 (Tip 6e-04
2kg2_A124 Solution Structure Of A Pdz Protein Length = 124 6e-04
4f8k_A109 Molecular Analysis Of The Interaction Between The P 8e-04
3tsw_A 391 Crystal Structure Of The Pdz3-Sh3-Guk Core Module O 8e-04
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of Syntenin With An Interleukin 5 Receptor Alpha Peptide. Length = 166 Back     alignment and structure 
Iteration: 1

 Score =  177 bits (450), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 81/138 (58%), Positives = 108/138 (78%)
Query: 18  KLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQ 77
           ++ LCKD  GKIGLR+ +I  G+FV LVQ  SPA+LVGLRFGDQ+LQ+NG+  AG +  +
Sbjct: 7   EVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDK 66
Query: 78  VHALLRNCPVNNISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLL 137
            H +L+      I++ +RDRPFER +T+HKDS GHVGF FK G+I  +VK+SSA+RNGLL
Sbjct: 67  AHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLL 126
Query: 138 TDHHILEVNGQNVVGLKN 155
           T+H+I E+NGQNV+GLK+
Sbjct: 127 TEHNICEINGQNVIGLKD 144
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of Syntenin With An Interleukin 5 Receptor Alpha Peptide. Length = 166 Back     alignment and structure
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin Length = 166 Back     alignment and structure
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin Length = 166 Back     alignment and structure
>pdb|1NTE|A Chain A, Crystal Structure Analysis Of The Second Pdz Domain Of Syntenin Length = 82 Back     alignment and structure
>pdb|1OBY|A Chain A, Crystal Structure Of The Complex Of Pdz2 Of Syntenin With A Syndecan-4 Peptide. Length = 79 Back     alignment and structure
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD Proteins Revealed By The Closed Conformation Of The Tandem Pdz Domains Length = 185 Back     alignment and structure
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD Proteins Revealed By The Closed Conformation Of The Tandem Pdz Domains Length = 185 Back     alignment and structure
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human Scrib1 Length = 97 Back     alignment and structure
>pdb|2YUY|A Chain A, Solution Structure Of Pdz Domain Of Rho Gtpase Activating Protein 21 Length = 126 Back     alignment and structure
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble Homolog Protein (Hscrib) Length = 110 Back     alignment and structure
>pdb|1Y7N|A Chain A, Solution Structure Of The Second Pdz Domain Of The Human Neuronal Adaptor X11alpha Length = 90 Back     alignment and structure
>pdb|2YT8|A Chain A, Solution Structure Of The Pdz Domain Of Amyloid Beta A4 Precursor Protein-Binding Family A Member 3 (Neuron- Specific X11l2 Protein) (Neuronal Munc18-1-Interacting Protein 3) (Mint-3) (Adapter Protein X11gamma) Length = 94 Back     alignment and structure
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In Complex With A Fluorogenic Peptide-Based Ligand Length = 104 Back     alignment and structure
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv Peptide Ligand Length = 119 Back     alignment and structure
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse- Associated Protein 102 Length = 113 Back     alignment and structure
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs Large Homologue 2, Dlg2 Length = 102 Back     alignment and structure
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95 Length = 104 Back     alignment and structure
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721 Back     alignment and structure
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95 Length = 98 Back     alignment and structure
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In Complex With A C-Terminal Peptide Derived From Cript. Length = 119 Back     alignment and structure
>pdb|2OCS|A Chain A, The Crystal Structure Of The First Pdz Domain Of Human Nherf-2 (slc9a3r2) Length = 88 Back     alignment and structure
>pdb|1U39|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD Proteins Revealed By The Closed Conformation Of The Tandem Pdz Domains Length = 80 Back     alignment and structure
>pdb|3NGH|A Chain A, Molecular Analysis Of The Interaction Of The Hdl Receptor Sr-Bi With The Adaptor Protein Pdzk1 Length = 106 Back     alignment and structure
>pdb|2EDZ|A Chain A, Solution Structures Of The Pdz Domain Of Mus Musculus Pdz Domain-Containing Protein 1 Length = 114 Back     alignment and structure
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure Length = 124 Back     alignment and structure
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex With Connexin-45 Peptide Length = 468 Back     alignment and structure
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia Virus Type I) Binding Protein 3 Length = 139 Back     alignment and structure
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of Kir2.3 Length = 124 Back     alignment and structure
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113) Length = 113 Back     alignment and structure
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz Domain Bound To Ical36-L (Ansrwptsil) Peptide Length = 102 Back     alignment and structure
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz Domain Bound To Ical36 Inhibitor Peptide Length = 104 Back     alignment and structure
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein Length = 124 Back     alignment and structure
>pdb|4F8K|A Chain A, Molecular Analysis Of The Interaction Between The Prostacyclin Receptor And The First Pdz Domain Of Pdzk1 Length = 109 Back     alignment and structure
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human Zo-1 Length = 391 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query232
1w9e_A166 Syntenin 1; cell adhesion, adhesion/complex, PDZ d 1e-41
1w9e_A166 Syntenin 1; cell adhesion, adhesion/complex, PDZ d 7e-24
1w9e_A166 Syntenin 1; cell adhesion, adhesion/complex, PDZ d 1e-05
1w9e_A166 Syntenin 1; cell adhesion, adhesion/complex, PDZ d 2e-05
3suz_A388 Amyloid beta A4 precursor protein-binding family 2 3e-30
1r6j_A82 Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap 3e-24
1r6j_A82 Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap 3e-20
1r6j_A82 Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap 4e-09
1y7n_A90 Amyloid beta A4 precursor protein-binding family A 1e-20
1y7n_A90 Amyloid beta A4 precursor protein-binding family A 1e-14
1y7n_A90 Amyloid beta A4 precursor protein-binding family A 7e-08
2vz5_A139 TAX1-binding protein 3; WNT signaling pathway, pro 3e-17
2qt5_A200 Glutamate receptor-interacting protein 1; PDZ-pept 7e-17
3r0h_A206 INAD, inactivation-NO-after-potential D protein; p 1e-16
3r0h_A206 INAD, inactivation-NO-after-potential D protein; p 1e-11
1p1d_A196 PDZ45, glutamate receptor interacting protein; PDZ 2e-16
1p1d_A196 PDZ45, glutamate receptor interacting protein; PDZ 5e-08
3gsl_A196 Disks large homolog 4; PDZ domain, tandem, PSD-95, 6e-15
2eaq_A90 LIM domain only protein 7; conserved hypothetical 8e-15
2eaq_A90 LIM domain only protein 7; conserved hypothetical 3e-05
2eaq_A90 LIM domain only protein 7; conserved hypothetical 6e-05
2d90_A102 PDZ domain containing protein 1; structural genomi 2e-14
2d90_A102 PDZ domain containing protein 1; structural genomi 1e-05
2d90_A102 PDZ domain containing protein 1; structural genomi 1e-05
1vae_A111 Rhophilin 2, rhophilin, RHO GTPase binding protein 3e-14
1vae_A111 Rhophilin 2, rhophilin, RHO GTPase binding protein 2e-04
2eei_A106 PDZ domain-containing protein 1; regulatory factor 3e-14
2eei_A106 PDZ domain-containing protein 1; regulatory factor 2e-06
2eei_A106 PDZ domain-containing protein 1; regulatory factor 3e-05
3r68_A95 Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P 3e-14
3r68_A95 Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P 5e-06
3r68_A95 Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P 1e-05
1uit_A117 Human discs large 5 protein; PDZ domain, HDLG5, ma 2e-13
1uit_A117 Human discs large 5 protein; PDZ domain, HDLG5, ma 6e-06
1m5z_A91 GRIP, AMPA receptor interacting protein; six beta- 3e-13
1m5z_A91 GRIP, AMPA receptor interacting protein; six beta- 1e-05
1m5z_A91 GRIP, AMPA receptor interacting protein; six beta- 3e-04
2v90_A96 PDZ domain-containing protein 3; membrane, protein 5e-13
2v90_A96 PDZ domain-containing protein 3; membrane, protein 2e-06
2v90_A96 PDZ domain-containing protein 3; membrane, protein 1e-05
2kjd_A128 Sodium/hydrogen exchange regulatory cofactor NHE- 9e-13
2kjd_A128 Sodium/hydrogen exchange regulatory cofactor NHE- 3e-05
2kjd_A128 Sodium/hydrogen exchange regulatory cofactor NHE- 1e-04
2vsp_A91 PDZ domain-containing protein 1; membrane, cytopla 9e-13
2vsp_A91 PDZ domain-containing protein 1; membrane, cytopla 1e-05
2vsp_A91 PDZ domain-containing protein 1; membrane, cytopla 2e-05
2jxo_A98 Ezrin-radixin-moesin-binding phosphoprotein 50; nh 1e-12
2jxo_A98 Ezrin-radixin-moesin-binding phosphoprotein 50; nh 4e-06
2jxo_A98 Ezrin-radixin-moesin-binding phosphoprotein 50; nh 8e-06
2dls_A93 PDZ-rhogef, RHO guanine nucleotide exchange factor 2e-12
2dls_A93 PDZ-rhogef, RHO guanine nucleotide exchange factor 7e-06
2dls_A93 PDZ-rhogef, RHO guanine nucleotide exchange factor 7e-04
3qe1_A107 Sorting nexin-27, G protein-activated inward RECT 2e-12
3qe1_A107 Sorting nexin-27, G protein-activated inward RECT 6e-05
2yuy_A126 RHO GTPase activating protein 21; PDZ domain, stru 2e-12
2yuy_A126 RHO GTPase activating protein 21; PDZ domain, stru 6e-06
2edz_A114 PDZ domain-containing protein 1; CFTR-associated p 5e-12
2edz_A114 PDZ domain-containing protein 1; CFTR-associated p 7e-06
2edz_A114 PDZ domain-containing protein 1; CFTR-associated p 4e-05
1whd_A100 RGS3, regulator of G-protein signaling 3; PDZ doma 6e-12
1whd_A100 RGS3, regulator of G-protein signaling 3; PDZ doma 1e-05
1whd_A100 RGS3, regulator of G-protein signaling 3; PDZ doma 2e-05
2f5y_A91 Regulator of G-protein signalling 3 isoform 1; PDZ 6e-12
2f5y_A91 Regulator of G-protein signalling 3 isoform 1; PDZ 2e-05
2f5y_A91 Regulator of G-protein signalling 3 isoform 1; PDZ 5e-05
1x5n_A114 Harmonin; PDZ domain, usher syndrome 1C protein, a 6e-12
1x5n_A114 Harmonin; PDZ domain, usher syndrome 1C protein, a 1e-04
2krg_A216 Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a 8e-12
2krg_A216 Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a 1e-05
2krg_A 216 Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a 8e-05
2kv8_A83 RGS12, regulator of G-protein signaling 12; PDZ do 8e-12
2kv8_A83 RGS12, regulator of G-protein signaling 12; PDZ do 5e-06
2kv8_A83 RGS12, regulator of G-protein signaling 12; PDZ do 8e-05
2he4_A90 Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p 1e-11
2he4_A90 Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p 1e-05
2he4_A90 Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p 2e-05
3ngh_A106 PDZ domain-containing protein 1; adaptor protein, 1e-11
3ngh_A106 PDZ domain-containing protein 1; adaptor protein, 2e-05
3ngh_A106 PDZ domain-containing protein 1; adaptor protein, 2e-05
3tsv_A124 Tight junction protein ZO-1; PDZ, scaffolding, JAM 2e-11
3tsv_A124 Tight junction protein ZO-1; PDZ, scaffolding, JAM 4e-04
2xkx_A 721 Disks large homolog 4; structural protein, scaffol 2e-11
2xkx_A 721 Disks large homolog 4; structural protein, scaffol 7e-09
2xkx_A 721 Disks large homolog 4; structural protein, scaffol 5e-07
2xkx_A 721 Disks large homolog 4; structural protein, scaffol 2e-04
2eeh_A100 PDZ domain-containing protein 7; structural genomi 2e-11
2eeh_A100 PDZ domain-containing protein 7; structural genomi 2e-06
1v5l_A103 PDZ and LIM domain 3; actinin alpha 2 associated L 2e-11
1v5l_A103 PDZ and LIM domain 3; actinin alpha 2 associated L 5e-04
2eeg_A94 PDZ and LIM domain protein 4; PDZ domain, structur 2e-11
2eeg_A94 PDZ and LIM domain protein 4; PDZ domain, structur 7e-04
1g9o_A91 NHE-RF; PDZ domain, complex, signaling protein; 1. 2e-11
1g9o_A91 NHE-RF; PDZ domain, complex, signaling protein; 1. 6e-06
1g9o_A91 NHE-RF; PDZ domain, complex, signaling protein; 1. 1e-05
2qkv_A96 Inactivation-NO-after-potential D protein; PDZ dom 4e-11
2qkv_A96 Inactivation-NO-after-potential D protein; PDZ dom 2e-05
2qkv_A96 Inactivation-NO-after-potential D protein; PDZ dom 6e-04
2d8i_A114 T-cell lymphoma invasion and metastasis 1 variant; 4e-11
1rgw_A85 ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, 6e-11
1rgw_A85 ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, 8e-04
1wf7_A103 Enigma homologue protein; PDZ domain, structural g 6e-11
1vb7_A94 PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, 6e-11
1um7_A113 Synapse-associated protein 102; PDZ, discs large h 9e-11
1um7_A113 Synapse-associated protein 102; PDZ, discs large h 3e-05
1wi2_A104 Riken cDNA 2700099C19; structural genomics, riken 9e-11
1wi2_A104 Riken cDNA 2700099C19; structural genomics, riken 5e-06
2ego_A96 General receptor for phosphoinositides 1- associat 9e-11
2ego_A96 General receptor for phosphoinositides 1- associat 2e-05
2ego_A96 General receptor for phosphoinositides 1- associat 8e-05
3shw_A 468 Tight junction protein ZO-1; PDZ-SH3-GUK supramodu 1e-10
3shw_A 468 Tight junction protein ZO-1; PDZ-SH3-GUK supramodu 1e-04
2pa1_A87 PDZ and LIM domain protein 2; PDZ domain, structur 1e-10
2vsv_A109 Rhophilin-2; scaffold protein, RHO GTPase binding, 1e-10
2vsv_A109 Rhophilin-2; scaffold protein, RHO GTPase binding, 6e-04
3pv2_A451 DEGQ; trypsin fold, PDZ domain, chaperone protease 2e-10
3pv2_A451 DEGQ; trypsin fold, PDZ domain, chaperone protease 4e-06
3k1r_A192 Harmonin; protein-protein complex, alternative spl 2e-10
3k1r_A192 Harmonin; protein-protein complex, alternative spl 2e-05
3khf_A99 Microtubule-associated serine/threonine-protein ki 2e-10
3khf_A99 Microtubule-associated serine/threonine-protein ki 2e-05
2uzc_A88 Human pdlim5, PDZ and LIM domain 5; metal-binding, 2e-10
2z17_A104 Pleckstrin homology SEC7 and coiled-coil domains- 2e-10
2z17_A104 Pleckstrin homology SEC7 and coiled-coil domains- 1e-04
2z17_A104 Pleckstrin homology SEC7 and coiled-coil domains- 6e-04
3i4w_A104 Disks large homolog 4; alpha and beta protein, alt 2e-10
3i4w_A104 Disks large homolog 4; alpha and beta protein, alt 1e-04
1q3o_A109 Shank1; PDZ, GKAP, peptide binding protein; 1.80A 2e-10
1q3o_A109 Shank1; PDZ, GKAP, peptide binding protein; 1.80A 3e-05
2q3g_A89 PDZ and LIM domain protein 7; structural genomics, 2e-10
2q3g_A89 PDZ and LIM domain protein 7; structural genomics, 6e-04
3kzd_A94 TIAM-1, T-lymphoma invasion and metastasis-inducin 2e-10
1x5q_A110 LAP4 protein; PDZ domain, scribble homolog protein 3e-10
1x5q_A110 LAP4 protein; PDZ domain, scribble homolog protein 2e-04
1tp5_A119 Presynaptic density protein 95; PDZ-peptide ligand 3e-10
1tp5_A119 Presynaptic density protein 95; PDZ-peptide ligand 7e-05
2w4f_A97 Protein LAP4; structural protein, phosphoprotein, 3e-10
2w4f_A97 Protein LAP4; structural protein, phosphoprotein, 3e-04
2dlu_A111 INAD-like protein; PDZ domain, inadl protein, hina 3e-10
2dlu_A111 INAD-like protein; PDZ domain, inadl protein, hina 4e-04
1ky9_A448 Protease DO, DEGP, HTRA; protein quality control, 6e-10
1ky9_A448 Protease DO, DEGP, HTRA; protein quality control, 3e-06
2pkt_A91 PDZ and LIM domain protein 1; PDZ domain, structur 6e-10
1uf1_A128 KIAA1526 protein; PDZ domain, structural genomics, 6e-10
1uf1_A128 KIAA1526 protein; PDZ domain, structural genomics, 5e-05
1uez_A101 KIAA1526 protein; PDZ domain, structural genomics, 6e-10
3tsz_A 391 Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol 7e-10
3tsz_A 391 Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol 9e-05
1va8_A113 Maguk P55 subfamily member 5; PDZ domain, palmitoy 7e-10
1va8_A113 Maguk P55 subfamily member 5; PDZ domain, palmitoy 4e-07
1va8_A113 Maguk P55 subfamily member 5; PDZ domain, palmitoy 1e-06
4a8c_A436 Periplasmic PH-dependent serine endoprotease DEGQ; 8e-10
4a8c_A436 Periplasmic PH-dependent serine endoprotease DEGQ; 1e-05
3l4f_D132 SH3 and multiple ankyrin repeat domains protein 1; 1e-09
3l4f_D132 SH3 and multiple ankyrin repeat domains protein 1; 2e-05
1x6d_A119 Interleukin-16; PDZ domain, lymphocyte chemoattrac 1e-09
2cs5_A119 Tyrosine-protein phosphatase, non-receptor type 4; 1e-09
2cs5_A119 Tyrosine-protein phosphatase, non-receptor type 4; 3e-04
2daz_A124 INAD-like protein; PDZ domain, inadl protein, hina 3e-09
2la8_A106 Inactivation-NO-after-potential D protein, KON-TI 3e-09
2la8_A106 Inactivation-NO-after-potential D protein, KON-TI 2e-04
1wh1_A124 KIAA1095 protein; PDZ domain, structural genomics, 3e-09
1um1_A110 KIAA1849 protein, RSGI RUH-007; PDZ domain, human 5e-09
2eno_A120 Synaptojanin-2-binding protein; mitochondrial oute 5e-09
1qau_A112 Neuronal nitric oxide synthase (residues 1-130); b 7e-09
1qau_A112 Neuronal nitric oxide synthase (residues 1-130); b 5e-05
1i16_A130 Interleukin 16, LCF; cytokine, lymphocyte chemoatt 8e-09
1b8q_A127 Protein (neuronal nitric oxide synthase); PDZ doma 8e-09
1b8q_A127 Protein (neuronal nitric oxide synthase); PDZ doma 2e-05
2ehr_A117 INAD-like protein; PDZ domain, inadl protein, hina 8e-09
2vwr_A95 Ligand of NUMB protein X 2; protein-binding, metal 8e-09
1ihj_A98 INAD; intermolecular disulfide bond, PDZ domain, s 9e-09
1wif_A126 RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s 1e-08
1wif_A126 RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s 2e-05
2rcz_A81 Tight junction protein ZO-1; PDZ, domain-swapping, 1e-08
2rcz_A81 Tight junction protein ZO-1; PDZ, domain-swapping, 7e-06
1v5q_A122 GRIP1 homolog, glutamate receptor interacting prot 2e-08
1uew_A114 Membrane associated guanylate kinase inverted-2 (M 2e-08
3cyy_A92 Tight junction protein ZO-1; protein-ligand comple 2e-08
3cyy_A92 Tight junction protein ZO-1; protein-ligand comple 1e-04
2db5_A128 INAD-like protein; PDZ domain, hinadl, PALS1- asso 3e-08
2dmz_A129 INAD-like protein; PDZ domain, inadl protein, hina 3e-08
1d5g_A96 Human phosphatase HPTP1E; protein-peptide complex, 3e-08
1v62_A117 KIAA1719 protein; structural genomics, synaptic tr 3e-08
1v62_A117 KIAA1719 protein; structural genomics, synaptic tr 2e-05
1v62_A117 KIAA1719 protein; structural genomics, synaptic tr 2e-04
2edv_A96 FERM and PDZ domain-containing protein 1; cytoskel 3e-08
2edv_A96 FERM and PDZ domain-containing protein 1; cytoskel 9e-05
2edv_A96 FERM and PDZ domain-containing protein 1; cytoskel 5e-04
1uep_A103 Membrane associated guanylate kinase inverted-2 (M 4e-08
2d92_A108 INAD-like protein; PDZ domain, inadl protein, hina 4e-08
2jre_A108 C60-1 PDZ domain peptide; de novo protein; NMR {Sy 4e-08
1wf8_A107 Neurabin-I; PDZ domain, structural genomics, NPPSF 5e-08
1q7x_A108 PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str 5e-08
2jil_A97 GRIP1 protein, glutamate receptor interacting prot 5e-08
2i1n_A102 Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig 5e-08
2iwn_A97 Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP 5e-08
3e17_A88 Tight junction protein ZO-2; domain swapping, alte 6e-08
3e17_A88 Tight junction protein ZO-2; domain swapping, alte 3e-04
2djt_A104 Unnamed protein product; PDZ domain, structural ge 6e-08
2djt_A104 Unnamed protein product; PDZ domain, structural ge 5e-04
3nfk_A107 Tyrosine-protein phosphatase non-receptor type 4; 6e-08
2dc2_A103 GOPC, golgi associated PDZ and coiled-coil motif c 6e-08
2dc2_A103 GOPC, golgi associated PDZ and coiled-coil motif c 8e-04
3hpk_A125 Protein interacting with PRKCA 1; oxidized, PDZ do 7e-08
3hpk_A125 Protein interacting with PRKCA 1; oxidized, PDZ do 1e-04
2q9v_A90 Membrane-associated guanylate kinase, WW and PDZ c 7e-08
2dkr_A93 LIN-7 homolog B; LIN-7B, PDZ, structural genomics, 7e-08
2jik_A101 Synaptojanin-2 binding protein; transmembrane, out 7e-08
2yt7_A101 Amyloid beta A4 precursor protein-binding family A 8e-08
2yt7_A101 Amyloid beta A4 precursor protein-binding family A 5e-04
1uju_A111 Scribble; PDZ domain, cellular signaling, structur 8e-08
1ueq_A123 Membrane associated guanylate kinase inverted-2 (M 1e-07
1ujd_A117 KIAA0559 protein; PDZ domain, structural genomics, 1e-07
1ujd_A117 KIAA0559 protein; PDZ domain, structural genomics, 6e-04
1wfg_A131 Regulating synaptic membrane exocytosis protein 2; 1e-07
1wfv_A103 Membrane associated guanylate kinase inverted-2; a 1e-07
1wfv_A103 Membrane associated guanylate kinase inverted-2; a 7e-04
2edp_A100 Fragment, shroom family member 4; APX/shroom famil 1e-07
1nf3_C128 PAR-6B; semi-CRIB motif, switch I and II, PDZ doma 1e-07
1nf3_C128 PAR-6B; semi-CRIB motif, switch I and II, PDZ doma 1e-04
1qav_A90 Alpha-1 syntrophin (residues 77-171); beta-finger, 2e-07
1qav_A90 Alpha-1 syntrophin (residues 77-171); beta-finger, 3e-04
2koj_A111 Partitioning defective 3 homolog; PDZ domain, stru 2e-07
2g5m_B113 Neurabin-2; spinophilin, PDZ domain, CNS, synaptic 2e-07
2opg_A98 Multiple PDZ domain protein; structural protein, s 2e-07
3bpu_A88 Membrane-associated guanylate kinase, WW and PDZ c 2e-07
2dm8_A116 INAD-like protein; PDZ domain, inadl protein, hina 2e-07
2kpk_A129 Membrane-associated guanylate kinase, WW and PDZ c 2e-07
2kpk_A129 Membrane-associated guanylate kinase, WW and PDZ c 7e-04
2gzv_A114 PRKCA-binding protein; protein kinase C, PDZ domai 3e-07
2gzv_A114 PRKCA-binding protein; protein kinase C, PDZ domai 3e-05
1wha_A105 KIAA0147 protein, scribble; PDZ domain, cellular s 3e-07
1uhp_A107 Hypothetical protein KIAA1095; PDZ domain, semapho 3e-07
3axa_A106 Afadin, nectin-3, protein AF-6; PDZ domain, fusion 3e-07
2r4h_A112 Membrane-associated guanylate kinase, WW and PDZ c 3e-07
1kwa_A88 Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca 4e-07
1kwa_A88 Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca 1e-05
1kwa_A88 Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca 1e-05
3soe_A113 Membrane-associated guanylate kinase, WW and PDZ c 4e-07
2fe5_A94 Presynaptic protein SAP102; PDZ domain, DLG3, huma 4e-07
2o2t_A117 Multiple PDZ domain protein; structural protein, s 5e-07
2kom_A121 Partitioning defective 3 homolog; PAR-3B, PDZ doma 5e-07
2qg1_A92 Multiple PDZ domain protein; MPDZ, MUPP1, structur 5e-07
2qg1_A92 Multiple PDZ domain protein; MPDZ, MUPP1, structur 7e-05
2fcf_A103 Multiple PDZ domain protein; adaptor molecule, pro 5e-07
2pzd_A113 Serine protease HTRA2; PDZ domain, apoptosis, mito 5e-07
1y8t_A324 Hypothetical protein RV0983; serine protease, stru 5e-07
1n7e_A97 AMPA receptor interacting protein GRIP; PDZ, prote 6e-07
3egg_C170 Spinophilin; PP1, serine/threonine phosphatase, po 6e-07
3k50_A 403 Putative S41 protease; structural genomics, joint 6e-07
2ejy_A97 55 kDa erythrocyte membrane protein; GPC, maguk, P 6e-07
2ejy_A97 55 kDa erythrocyte membrane protein; GPC, maguk, P 1e-05
3gge_A95 PDZ domain-containing protein GIPC2; structural ge 7e-07
2iwo_A120 Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP 7e-07
2p3w_A112 Probable serine protease HTRA3; PDZ domain, phage 8e-07
2i04_A85 Membrane-associated guanylate kinase, WW and PDZ d 8e-07
2i04_A85 Membrane-associated guanylate kinase, WW and PDZ d 6e-04
2iwq_A123 Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP 9e-07
2fne_A117 Multiple PDZ domain protein; structural protein, s 9e-07
2lob_A112 Golgi-associated PDZ and coiled-coil motif-contai 1e-06
2zpm_A91 Regulator of sigma E protease; metalloproteinase, 1e-06
3o46_A93 Maguk P55 subfamily member 7; PDZ domain, structur 1e-06
3o46_A93 Maguk P55 subfamily member 7; PDZ domain, structur 2e-06
3o46_A93 Maguk P55 subfamily member 7; PDZ domain, structur 6e-05
2kl1_A94 YLBL protein; structure genomics, structural genom 2e-06
1v6b_A118 Harmonin isoform A1; structural genomics, usher sy 2e-06
3id1_A95 Regulator of sigma E protease; hydrolase, cell inn 2e-06
1z87_A263 Alpha-1-syntrophin; protein binding; NMR {Mus musc 2e-06
1n7t_A103 99-MER peptide of densin-180-like protein; PDZ dom 3e-06
2byg_A117 Channel associated protein of synapse-110; DLG2, P 3e-06
3num_A332 Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom 3e-06
1mfg_A95 ERB-B2 interacting protein; PDZ domain, protein-pe 3e-06
1ujv_A96 Membrane associated guanylate kinase inverted-2 (M 3e-06
1ufx_A103 KIAA1526 protein; PDZ domain, structural genomics, 4e-06
4fgm_A597 Aminopeptidase N family protein; structural genomi 4e-06
3rle_A209 Golgi reassembly-stacking protein 2; PDZ, tether, 4e-06
2csj_A117 TJP2 protein; PDZ domain, structural genomics, NPP 4e-06
2awx_A105 Synapse associated protein 97; membrane protein, s 4e-06
1lcy_A325 HTRA2 serine protease; apoptosis, PDZ domain, casp 5e-06
3b76_A118 E3 ubiquitin-protein ligase LNX; PDZ, bound ligand 5e-06
1wi4_A109 Synip, syntaxin binding protein 4; syntaxin4-inter 6e-06
1wg6_A127 Hypothetical protein (riken cDNA 2810455B10); stru 6e-06
1te0_A318 Protease DEGS; two domains, serine protease, PDZ, 7e-06
3cbz_A108 Dishevelled-2; PDZ domain, phage derived high affi 7e-06
2qbw_A195 PDZ-fibronectin fusion protein; fibronectin PDZ, u 8e-06
2e7k_A91 Maguk P55 subfamily member 2; PDZ domain, MPP2 pro 9e-06
3i18_A100 LMO2051 protein; alpha-beta protein, structural ge 1e-05
2l97_A134 HTRA, putative serine protease; HTRA-PDZ, protein 1e-05
2h2b_A107 Tight junction protein ZO-1; PDZ domain, phage der 2e-05
2kjp_A91 Uncharacterized protein YLBL; mixed alpha-beta pro 3e-05
3stj_A345 Protease DEGQ; serine protease, PDZ domain, protea 4e-05
1fc6_A388 Photosystem II D1 protease; D1 C-terminal processi 6e-05
2hga_A125 Conserved protein MTH1368; GFT structural genomics 8e-05
2i4s_A105 General secretion pathway protein C; EPSC, GSPC, P 2e-04
3qo6_A348 Protease DO-like 1, chloroplastic; protease, HTRA, 3e-04
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166 Back     alignment and structure
 Score =  138 bits (350), Expect = 1e-41
 Identities = 81/138 (58%), Positives = 106/138 (76%)

Query: 21  LCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHA 80
           LCKD  GKIGLR+ +I  G+FV LVQ  SPA+LVGLRFGDQ+LQ+NG+  AG +  + H 
Sbjct: 10  LCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHK 69

Query: 81  LLRNCPVNNISIVVRDRPFERNVTLHKDSAGHVGFQFKRGQIIRLVKESSASRNGLLTDH 140
           +L+      I++ +RDRPFER +T+HKDS GHVGF FK G+I  +VK+SSA+RNGLLT+H
Sbjct: 70  VLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEH 129

Query: 141 HILEVNGQNVVGLKNDSA 158
           +I E+NGQNV+GLK+   
Sbjct: 130 NICEINGQNVIGLKDSQI 147
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166 Back     alignment and structure
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166 Back     alignment and structure
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166 Back     alignment and structure
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388 Back     alignment and structure
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82 Back     alignment and structure
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82 Back     alignment and structure
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82 Back     alignment and structure
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90 Back     alignment and structure
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90 Back     alignment and structure
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90 Back     alignment and structure
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139 Back     alignment and structure
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200 Back     alignment and structure
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206 Back     alignment and structure
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206 Back     alignment and structure
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196 Back     alignment and structure
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196 Back     alignment and structure
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196 Back     alignment and structure
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90 Back     alignment and structure
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90 Back     alignment and structure
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90 Back     alignment and structure
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102 Back     alignment and structure
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102 Back     alignment and structure
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102 Back     alignment and structure
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111 Back     alignment and structure
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111 Back     alignment and structure
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106 Back     alignment and structure
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106 Back     alignment and structure
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106 Back     alignment and structure
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95 Back     alignment and structure
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95 Back     alignment and structure
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95 Back     alignment and structure
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117 Back     alignment and structure
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117 Back     alignment and structure
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91 Back     alignment and structure
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91 Back     alignment and structure
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91 Back     alignment and structure
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96 Back     alignment and structure
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96 Back     alignment and structure
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96 Back     alignment and structure
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128 Back     alignment and structure
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128 Back     alignment and structure
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128 Back     alignment and structure
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91 Back     alignment and structure
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91 Back     alignment and structure
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91 Back     alignment and structure
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98 Back     alignment and structure
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98 Back     alignment and structure
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98 Back     alignment and structure
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93 Back     alignment and structure
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93 Back     alignment and structure
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93 Back     alignment and structure
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126 Back     alignment and structure
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126 Back     alignment and structure
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114 Back     alignment and structure
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114 Back     alignment and structure
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114 Back     alignment and structure
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100 Back     alignment and structure
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100 Back     alignment and structure
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100 Back     alignment and structure
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91 Back     alignment and structure
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91 Back     alignment and structure
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91 Back     alignment and structure
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114 Back     alignment and structure
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114 Back     alignment and structure
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216 Back     alignment and structure
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216 Back     alignment and structure
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216 Back     alignment and structure
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83 Back     alignment and structure
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83 Back     alignment and structure
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83 Back     alignment and structure
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90 Back     alignment and structure
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90 Back     alignment and structure
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90 Back     alignment and structure
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106 Back     alignment and structure
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106 Back     alignment and structure
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106 Back     alignment and structure
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124 Back     alignment and structure
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124 Back     alignment and structure
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721 Back     alignment and structure
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721 Back     alignment and structure
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721 Back     alignment and structure
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721 Back     alignment and structure
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 Back     alignment and structure
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100 Back     alignment and structure
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103 Back     alignment and structure
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103 Back     alignment and structure
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94 Back     alignment and structure
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94 Back     alignment and structure
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91 Back     alignment and structure
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91 Back     alignment and structure
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91 Back     alignment and structure
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96 Back     alignment and structure
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96 Back     alignment and structure
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96 Back     alignment and structure
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114 Back     alignment and structure
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85 Back     alignment and structure
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85 Back     alignment and structure
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103 Back     alignment and structure
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94 Back     alignment and structure
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113 Back     alignment and structure
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113 Back     alignment and structure
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104 Back     alignment and structure
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104 Back     alignment and structure
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96 Back     alignment and structure
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96 Back     alignment and structure
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96 Back     alignment and structure
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468 Back     alignment and structure
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468 Back     alignment and structure
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87 Back     alignment and structure
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109 Back     alignment and structure
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109 Back     alignment and structure
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A Length = 451 Back     alignment and structure
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A Length = 451 Back     alignment and structure
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192 Back     alignment and structure
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192 Back     alignment and structure
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99 Back     alignment and structure
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99 Back     alignment and structure
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88 Back     alignment and structure
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104 Back     alignment and structure
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104 Back     alignment and structure
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104 Back     alignment and structure
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104 Back     alignment and structure
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104 Back     alignment and structure
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109 Back     alignment and structure
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109 Back     alignment and structure
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89 Back     alignment and structure
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89 Back     alignment and structure
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Length = 94 Back     alignment and structure
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110 Back     alignment and structure
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110 Back     alignment and structure
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119 Back     alignment and structure
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119 Back     alignment and structure
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97 Back     alignment and structure
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97 Back     alignment and structure
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Length = 448 Back     alignment and structure
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Length = 448 Back     alignment and structure
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91 Back     alignment and structure
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128 Back     alignment and structure
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128 Back     alignment and structure
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101 Back     alignment and structure
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391 Back     alignment and structure
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391 Back     alignment and structure
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113 Back     alignment and structure
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113 Back     alignment and structure
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113 Back     alignment and structure
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Length = 436 Back     alignment and structure
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Length = 436 Back     alignment and structure
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132 Back     alignment and structure
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132 Back     alignment and structure
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119 Back     alignment and structure
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119 Back     alignment and structure
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119 Back     alignment and structure
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124 Back     alignment and structure
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106 Back     alignment and structure
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106 Back     alignment and structure
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124 Back     alignment and structure
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110 Back     alignment and structure
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120 Back     alignment and structure
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112 Back     alignment and structure
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112 Back     alignment and structure
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130 Back     alignment and structure
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127 Back     alignment and structure
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127 Back     alignment and structure
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117 Back     alignment and structure
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95 Back     alignment and structure
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98 Back     alignment and structure
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126 Back     alignment and structure
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126 Back     alignment and structure
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81 Back     alignment and structure
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81 Back     alignment and structure
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122 Back     alignment and structure
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114 Back     alignment and structure
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92 Back     alignment and structure
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92 Back     alignment and structure
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128 Back     alignment and structure
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129 Back     alignment and structure
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96 Back     alignment and structure
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117 Back     alignment and structure
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117 Back     alignment and structure
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117 Back     alignment and structure
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 Back     alignment and structure
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 Back     alignment and structure
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96 Back     alignment and structure
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103 Back     alignment and structure
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108 Back     alignment and structure
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108 Back     alignment and structure
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107 Back     alignment and structure
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108 Back     alignment and structure
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97 Back     alignment and structure
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102 Back     alignment and structure
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97 Back     alignment and structure
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88 Back     alignment and structure
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88 Back     alignment and structure
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 Back     alignment and structure
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104 Back     alignment and structure
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107 Back     alignment and structure
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103 Back     alignment and structure
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103 Back     alignment and structure
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125 Back     alignment and structure
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125 Back     alignment and structure
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90 Back     alignment and structure
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93 Back     alignment and structure
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101 Back     alignment and structure
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101 Back     alignment and structure
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101 Back     alignment and structure
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111 Back     alignment and structure
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123 Back     alignment and structure
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117 Back     alignment and structure
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117 Back     alignment and structure
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131 Back     alignment and structure
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103 Back     alignment and structure
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103 Back     alignment and structure
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 Back     alignment and structure
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128 Back     alignment and structure
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128 Back     alignment and structure
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90 Back     alignment and structure
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90 Back     alignment and structure
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111 Back     alignment and structure
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113 Back     alignment and structure
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98 Back     alignment and structure
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88 Back     alignment and structure
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116 Back     alignment and structure
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129 Back     alignment and structure
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129 Back     alignment and structure
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114 Back     alignment and structure
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114 Back     alignment and structure
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105 Back     alignment and structure
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107 Back     alignment and structure
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106 Back     alignment and structure
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112 Back     alignment and structure
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88 Back     alignment and structure
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88 Back     alignment and structure
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88 Back     alignment and structure
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113 Back     alignment and structure
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94 Back     alignment and structure
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117 Back     alignment and structure
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121 Back     alignment and structure
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92 Back     alignment and structure
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92 Back     alignment and structure
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103 Back     alignment and structure
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4 Length = 113 Back     alignment and structure
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A Length = 324 Back     alignment and structure
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97 Back     alignment and structure
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170 Back     alignment and structure
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343} Length = 403 Back     alignment and structure
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97 Back     alignment and structure
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97 Back     alignment and structure
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95 Back     alignment and structure
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120 Back     alignment and structure
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens} Length = 112 Back     alignment and structure
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85 Back     alignment and structure
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85 Back     alignment and structure
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123 Back     alignment and structure
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117 Back     alignment and structure
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112 Back     alignment and structure
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A Length = 91 Back     alignment and structure
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93 Back     alignment and structure
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93 Back     alignment and structure
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93 Back     alignment and structure
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans} Length = 94 Back     alignment and structure
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118 Back     alignment and structure
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A Length = 95 Back     alignment and structure
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263 Back     alignment and structure
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103 Back     alignment and structure
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117 Back     alignment and structure
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 3nwu_A 2ytw_A 2joa_A Length = 332 Back     alignment and structure
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95 Back     alignment and structure
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96 Back     alignment and structure
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103 Back     alignment and structure
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR} Length = 597 Back     alignment and structure
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} Length = 209 Back     alignment and structure
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117 Back     alignment and structure
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105 Back     alignment and structure
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1 Length = 325 Back     alignment and structure
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118 Back     alignment and structure
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109 Back     alignment and structure
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127 Back     alignment and structure
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A Length = 318 Back     alignment and structure
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108 Back     alignment and structure
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A Length = 195 Back     alignment and structure
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91 Back     alignment and structure
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A Length = 100 Back     alignment and structure
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae} Length = 134 Back     alignment and structure
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107 Back     alignment and structure
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis} Length = 91 Back     alignment and structure
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli} Length = 345 Back     alignment and structure
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A Length = 388 Back     alignment and structure
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6 Length = 125 Back     alignment and structure
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5 Length = 105 Back     alignment and structure
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana} Length = 348 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query232
2xkx_A 721 Disks large homolog 4; structural protein, scaffol 99.96
1w9e_A166 Syntenin 1; cell adhesion, adhesion/complex, PDZ d 99.95
3gsl_A196 Disks large homolog 4; PDZ domain, tandem, PSD-95, 99.94
3r0h_A206 INAD, inactivation-NO-after-potential D protein; p 99.93
1p1d_A196 PDZ45, glutamate receptor interacting protein; PDZ 99.93
2qt5_A200 Glutamate receptor-interacting protein 1; PDZ-pept 99.92
3suz_A388 Amyloid beta A4 precursor protein-binding family 2 99.91
3pv2_A451 DEGQ; trypsin fold, PDZ domain, chaperone protease 99.84
4a8c_A436 Periplasmic PH-dependent serine endoprotease DEGQ; 99.84
3rle_A209 Golgi reassembly-stacking protein 2; PDZ, tether, 99.81
1ky9_A448 Protease DO, DEGP, HTRA; protein quality control, 99.74
1r6j_A82 Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap 99.65
4fln_A539 Protease DO-like 2, chloroplastic; protease, DEG, 99.61
1kwa_A88 Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca 99.6
1r6j_A82 Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap 99.59
2xkx_A 721 Disks large homolog 4; structural protein, scaffol 99.58
1wi2_A104 Riken cDNA 2700099C19; structural genomics, riken 99.57
2v90_A96 PDZ domain-containing protein 3; membrane, protein 99.57
1ihj_A98 INAD; intermolecular disulfide bond, PDZ domain, s 99.56
2he4_A90 Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p 99.56
2ejy_A97 55 kDa erythrocyte membrane protein; GPC, maguk, P 99.56
2iwo_A120 Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP 99.56
2eeh_A100 PDZ domain-containing protein 7; structural genomi 99.56
3gge_A95 PDZ domain-containing protein GIPC2; structural ge 99.56
1va8_A113 Maguk P55 subfamily member 5; PDZ domain, palmitoy 99.55
1g9o_A91 NHE-RF; PDZ domain, complex, signaling protein; 1. 99.55
2awx_A105 Synapse associated protein 97; membrane protein, s 99.54
1qau_A112 Neuronal nitric oxide synthase (residues 1-130); b 99.54
2pkt_A91 PDZ and LIM domain protein 1; PDZ domain, structur 99.53
2jil_A97 GRIP1 protein, glutamate receptor interacting prot 99.53
2pa1_A87 PDZ and LIM domain protein 2; PDZ domain, structur 99.53
3cbz_A108 Dishevelled-2; PDZ domain, phage derived high affi 99.52
1i16_A130 Interleukin 16, LCF; cytokine, lymphocyte chemoatt 99.52
2o2t_A117 Multiple PDZ domain protein; structural protein, s 99.52
2d92_A108 INAD-like protein; PDZ domain, inadl protein, hina 99.51
2qg1_A92 Multiple PDZ domain protein; MPDZ, MUPP1, structur 99.51
2yt7_A101 Amyloid beta A4 precursor protein-binding family A 99.51
2opg_A98 Multiple PDZ domain protein; structural protein, s 99.51
1qav_A90 Alpha-1 syntrophin (residues 77-171); beta-finger, 99.51
2dmz_A129 INAD-like protein; PDZ domain, inadl protein, hina 99.51
2vsp_A91 PDZ domain-containing protein 1; membrane, cytopla 99.51
2jik_A101 Synaptojanin-2 binding protein; transmembrane, out 99.51
2ego_A96 General receptor for phosphoinositides 1- associat 99.5
2i1n_A102 Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig 99.5
2fne_A117 Multiple PDZ domain protein; structural protein, s 99.5
2fcf_A103 Multiple PDZ domain protein; adaptor molecule, pro 99.5
2e7k_A91 Maguk P55 subfamily member 2; PDZ domain, MPP2 pro 99.5
3o46_A93 Maguk P55 subfamily member 7; PDZ domain, structur 99.5
2w4f_A97 Protein LAP4; structural protein, phosphoprotein, 99.49
3b76_A118 E3 ubiquitin-protein ligase LNX; PDZ, bound ligand 99.49
1x6d_A119 Interleukin-16; PDZ domain, lymphocyte chemoattrac 99.49
1d5g_A96 Human phosphatase HPTP1E; protein-peptide complex, 99.49
3e17_A88 Tight junction protein ZO-2; domain swapping, alte 99.49
2byg_A117 Channel associated protein of synapse-110; DLG2, P 99.49
2jxo_A98 Ezrin-radixin-moesin-binding phosphoprotein 50; nh 99.49
3r68_A95 Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P 99.49
1q3o_A109 Shank1; PDZ, GKAP, peptide binding protein; 1.80A 99.49
2vwr_A95 Ligand of NUMB protein X 2; protein-binding, metal 99.49
3ngh_A106 PDZ domain-containing protein 1; adaptor protein, 99.49
3l4f_D132 SH3 and multiple ankyrin repeat domains protein 1; 99.49
1ujd_A117 KIAA0559 protein; PDZ domain, structural genomics, 99.48
3qe1_A107 Sorting nexin-27, G protein-activated inward RECT 99.48
1n7e_A97 AMPA receptor interacting protein GRIP; PDZ, prote 99.48
2q3g_A89 PDZ and LIM domain protein 7; structural genomics, 99.48
1m5z_A91 GRIP, AMPA receptor interacting protein; six beta- 99.48
2cs5_A119 Tyrosine-protein phosphatase, non-receptor type 4; 99.48
2h2b_A107 Tight junction protein ZO-1; PDZ domain, phage der 99.47
2vz5_A139 TAX1-binding protein 3; WNT signaling pathway, pro 99.47
2dlu_A111 INAD-like protein; PDZ domain, inadl protein, hina 99.47
2fe5_A94 Presynaptic protein SAP102; PDZ domain, DLG3, huma 99.47
3i4w_A104 Disks large homolog 4; alpha and beta protein, alt 99.47
2f5y_A91 Regulator of G-protein signalling 3 isoform 1; PDZ 99.47
1ueq_A123 Membrane associated guanylate kinase inverted-2 (M 99.47
1um1_A110 KIAA1849 protein, RSGI RUH-007; PDZ domain, human 99.47
4e34_A87 Golgi-associated PDZ and coiled-coil motif-contai 99.46
2jre_A108 C60-1 PDZ domain peptide; de novo protein; NMR {Sy 99.46
2i04_A85 Membrane-associated guanylate kinase, WW and PDZ d 99.46
1wi4_A109 Synip, syntaxin binding protein 4; syntaxin4-inter 99.46
3sfj_A104 TAX1-binding protein 3; PDZ:peptide complex, signa 99.46
2eno_A120 Synaptojanin-2-binding protein; mitochondrial oute 99.46
2iwq_A123 Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP 99.46
3axa_A106 Afadin, nectin-3, protein AF-6; PDZ domain, fusion 99.46
1v62_A117 KIAA1719 protein; structural genomics, synaptic tr 99.46
2r4h_A112 Membrane-associated guanylate kinase, WW and PDZ c 99.46
2g5m_B113 Neurabin-2; spinophilin, PDZ domain, CNS, synaptic 99.45
1b8q_A127 Protein (neuronal nitric oxide synthase); PDZ doma 99.45
1x5q_A110 LAP4 protein; PDZ domain, scribble homolog protein 99.45
2ehr_A117 INAD-like protein; PDZ domain, inadl protein, hina 99.45
1v5q_A122 GRIP1 homolog, glutamate receptor interacting prot 99.45
2q9v_A90 Membrane-associated guanylate kinase, WW and PDZ c 99.45
1nf3_C128 PAR-6B; semi-CRIB motif, switch I and II, PDZ doma 99.45
3nfk_A107 Tyrosine-protein phosphatase non-receptor type 4; 99.45
2d90_A102 PDZ domain containing protein 1; structural genomi 99.44
2csj_A117 TJP2 protein; PDZ domain, structural genomics, NPP 99.44
2vsv_A109 Rhophilin-2; scaffold protein, RHO GTPase binding, 99.44
2rcz_A81 Tight junction protein ZO-1; PDZ, domain-swapping, 99.44
2uzc_A88 Human pdlim5, PDZ and LIM domain 5; metal-binding, 99.44
2db5_A128 INAD-like protein; PDZ domain, hinadl, PALS1- asso 99.44
2eaq_A90 LIM domain only protein 7; conserved hypothetical 99.44
1wf8_A107 Neurabin-I; PDZ domain, structural genomics, NPPSF 99.44
2dc2_A103 GOPC, golgi associated PDZ and coiled-coil motif c 99.44
2koj_A111 Partitioning defective 3 homolog; PDZ domain, stru 99.43
2dkr_A93 LIN-7 homolog B; LIN-7B, PDZ, structural genomics, 99.43
3bpu_A88 Membrane-associated guanylate kinase, WW and PDZ c 99.43
2kjd_A128 Sodium/hydrogen exchange regulatory cofactor NHE- 99.43
2djt_A104 Unnamed protein product; PDZ domain, structural ge 99.43
3soe_A113 Membrane-associated guanylate kinase, WW and PDZ c 99.43
2qkv_A96 Inactivation-NO-after-potential D protein; PDZ dom 99.43
1y7n_A90 Amyloid beta A4 precursor protein-binding family A 99.43
1uep_A103 Membrane associated guanylate kinase inverted-2 (M 99.43
1uhp_A107 Hypothetical protein KIAA1095; PDZ domain, semapho 99.43
2dls_A93 PDZ-rhogef, RHO guanine nucleotide exchange factor 99.43
2kpk_A129 Membrane-associated guanylate kinase, WW and PDZ c 99.43
3hpk_A125 Protein interacting with PRKCA 1; oxidized, PDZ do 99.43
2z17_A104 Pleckstrin homology SEC7 and coiled-coil domains- 99.43
2kv8_A83 RGS12, regulator of G-protein signaling 12; PDZ do 99.42
2gzv_A114 PRKCA-binding protein; protein kinase C, PDZ domai 99.42
2la8_A106 Inactivation-NO-after-potential D protein, KON-TI 99.42
1uit_A117 Human discs large 5 protein; PDZ domain, HDLG5, ma 99.42
1vb7_A94 PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, 99.41
2qg1_A92 Multiple PDZ domain protein; MPDZ, MUPP1, structur 99.41
2edz_A114 PDZ domain-containing protein 1; CFTR-associated p 99.41
2ego_A96 General receptor for phosphoinositides 1- associat 99.41
1tp5_A119 Presynaptic density protein 95; PDZ-peptide ligand 99.41
1wg6_A127 Hypothetical protein (riken cDNA 2810455B10); stru 99.4
2v90_A96 PDZ domain-containing protein 3; membrane, protein 99.4
4amh_A106 Disks large homolog 1; permutation, protein foldin 99.4
1uew_A114 Membrane associated guanylate kinase inverted-2 (M 99.4
1wh1_A124 KIAA1095 protein; PDZ domain, structural genomics, 99.4
2eei_A106 PDZ domain-containing protein 1; regulatory factor 99.4
2dm8_A116 INAD-like protein; PDZ domain, inadl protein, hina 99.4
3tsv_A124 Tight junction protein ZO-1; PDZ, scaffolding, JAM 99.4
1g9o_A91 NHE-RF; PDZ domain, complex, signaling protein; 1. 99.39
1whd_A100 RGS3, regulator of G-protein signaling 3; PDZ doma 99.39
1ujv_A96 Membrane associated guanylate kinase inverted-2 (M 99.39
2uzc_A88 Human pdlim5, PDZ and LIM domain 5; metal-binding, 99.39
1wf7_A103 Enigma homologue protein; PDZ domain, structural g 99.39
3b76_A118 E3 ubiquitin-protein ligase LNX; PDZ, bound ligand 99.39
2kom_A121 Partitioning defective 3 homolog; PAR-3B, PDZ doma 99.39
1wfg_A131 Regulating synaptic membrane exocytosis protein 2; 99.39
1wha_A105 KIAA0147 protein, scribble; PDZ domain, cellular s 99.38
1q7x_A108 PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str 99.38
4amh_A106 Disks large homolog 1; permutation, protein foldin 99.38
3ngh_A106 PDZ domain-containing protein 1; adaptor protein, 99.38
3khf_A99 Microtubule-associated serine/threonine-protein ki 99.38
2he4_A90 Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p 99.38
2pa1_A87 PDZ and LIM domain protein 2; PDZ domain, structur 99.38
2iwn_A97 Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP 99.38
3kzd_A94 TIAM-1, T-lymphoma invasion and metastasis-inducin 99.38
2l97_A134 HTRA, putative serine protease; HTRA-PDZ, protein 99.38
1uf1_A128 KIAA1526 protein; PDZ domain, structural genomics, 99.37
2pkt_A91 PDZ and LIM domain protein 1; PDZ domain, structur 99.37
3egg_C170 Spinophilin; PP1, serine/threonine phosphatase, po 99.37
2daz_A124 INAD-like protein; PDZ domain, inadl protein, hina 99.37
1uez_A101 KIAA1526 protein; PDZ domain, structural genomics, 99.37
1v6b_A118 Harmonin isoform A1; structural genomics, usher sy 99.37
3qe1_A107 Sorting nexin-27, G protein-activated inward RECT 99.37
3cyy_A92 Tight junction protein ZO-1; protein-ligand comple 99.36
1uju_A111 Scribble; PDZ domain, cellular signaling, structur 99.36
1d5g_A96 Human phosphatase HPTP1E; protein-peptide complex, 99.36
1rgw_A85 ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, 99.36
2iwo_A120 Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP 99.36
2f5y_A91 Regulator of G-protein signalling 3 isoform 1; PDZ 99.36
2q3g_A89 PDZ and LIM domain protein 7; structural genomics, 99.36
1kwa_A88 Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca 99.36
1rgw_A85 ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, 99.36
3gge_A95 PDZ domain-containing protein GIPC2; structural ge 99.36
1ufx_A103 KIAA1526 protein; PDZ domain, structural genomics, 99.36
3k1r_A192 Harmonin; protein-protein complex, alternative spl 99.36
1wif_A126 RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s 99.36
2i1n_A102 Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig 99.35
2awx_A105 Synapse associated protein 97; membrane protein, s 99.35
2dc2_A103 GOPC, golgi associated PDZ and coiled-coil motif c 99.35
2fe5_A94 Presynaptic protein SAP102; PDZ domain, DLG3, huma 99.35
2ejy_A97 55 kDa erythrocyte membrane protein; GPC, maguk, P 99.35
1mfg_A95 ERB-B2 interacting protein; PDZ domain, protein-pe 99.35
2eeg_A94 PDZ and LIM domain protein 4; PDZ domain, structur 99.35
3cyy_A92 Tight junction protein ZO-1; protein-ligand comple 99.35
1vb7_A94 PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, 99.35
1x5n_A114 Harmonin; PDZ domain, usher syndrome 1C protein, a 99.35
4e34_A87 Golgi-associated PDZ and coiled-coil motif-contai 99.34
2jik_A101 Synaptojanin-2 binding protein; transmembrane, out 99.34
1wfg_A131 Regulating synaptic membrane exocytosis protein 2; 99.34
2d8i_A114 T-cell lymphoma invasion and metastasis 1 variant; 99.34
2opg_A98 Multiple PDZ domain protein; structural protein, s 99.34
1ihj_A98 INAD; intermolecular disulfide bond, PDZ domain, s 99.34
2vsp_A91 PDZ domain-containing protein 1; membrane, cytopla 99.34
1qav_A90 Alpha-1 syntrophin (residues 77-171); beta-finger, 99.34
3khf_A99 Microtubule-associated serine/threonine-protein ki 99.34
3cbz_A108 Dishevelled-2; PDZ domain, phage derived high affi 99.33
2jil_A97 GRIP1 protein, glutamate receptor interacting prot 99.33
2vwr_A95 Ligand of NUMB protein X 2; protein-binding, metal 99.33
3r68_A95 Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P 99.33
1n7e_A97 AMPA receptor interacting protein GRIP; PDZ, prote 99.33
1uhp_A107 Hypothetical protein KIAA1095; PDZ domain, semapho 99.33
2i04_A85 Membrane-associated guanylate kinase, WW and PDZ d 99.33
2fne_A117 Multiple PDZ domain protein; structural protein, s 99.33
2d90_A102 PDZ domain containing protein 1; structural genomi 99.33
3qik_A101 Phosphatidylinositol 3,4,5-trisphosphate-dependen 99.33
2byg_A117 Channel associated protein of synapse-110; DLG2, P 99.33
2dkr_A93 LIN-7 homolog B; LIN-7B, PDZ, structural genomics, 99.33
2q9v_A90 Membrane-associated guanylate kinase, WW and PDZ c 99.33
1wfv_A103 Membrane associated guanylate kinase inverted-2; a 99.32
3o46_A93 Maguk P55 subfamily member 7; PDZ domain, structur 99.32
2yub_A118 LIMK-2, LIM domain kinase 2; PDZ domain, structura 99.32
3axa_A106 Afadin, nectin-3, protein AF-6; PDZ domain, fusion 99.32
3nfk_A107 Tyrosine-protein phosphatase non-receptor type 4; 99.32
1q7x_A108 PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str 99.32
2kv8_A83 RGS12, regulator of G-protein signaling 12; PDZ do 99.32
1v62_A117 KIAA1719 protein; structural genomics, synaptic tr 99.32
1v5l_A103 PDZ and LIM domain 3; actinin alpha 2 associated L 99.32
1m5z_A91 GRIP, AMPA receptor interacting protein; six beta- 99.31
2edp_A100 Fragment, shroom family member 4; APX/shroom famil 99.31
1ujd_A117 KIAA0559 protein; PDZ domain, structural genomics, 99.31
1wf8_A107 Neurabin-I; PDZ domain, structural genomics, NPPSF 99.31
3e17_A88 Tight junction protein ZO-2; domain swapping, alte 99.31
1wi2_A104 Riken cDNA 2700099C19; structural genomics, riken 99.31
2yuy_A126 RHO GTPase activating protein 21; PDZ domain, stru 99.31
1z87_A263 Alpha-1-syntrophin; protein binding; NMR {Mus musc 99.31
2edz_A114 PDZ domain-containing protein 1; CFTR-associated p 99.31
2w4f_A97 Protein LAP4; structural protein, phosphoprotein, 99.31
1n7t_A103 99-MER peptide of densin-180-like protein; PDZ dom 99.31
1mfg_A95 ERB-B2 interacting protein; PDZ domain, protein-pe 99.31
2jre_A108 C60-1 PDZ domain peptide; de novo protein; NMR {Sy 99.3
2eeg_A94 PDZ and LIM domain protein 4; PDZ domain, structur 99.3
1uep_A103 Membrane associated guanylate kinase inverted-2 (M 99.3
1q3o_A109 Shank1; PDZ, GKAP, peptide binding protein; 1.80A 99.3
2fcf_A103 Multiple PDZ domain protein; adaptor molecule, pro 99.3
1wha_A105 KIAA0147 protein, scribble; PDZ domain, cellular s 99.3
1uew_A114 Membrane associated guanylate kinase inverted-2 (M 99.3
1uf1_A128 KIAA1526 protein; PDZ domain, structural genomics, 99.3
2iwq_A123 Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP 99.3
1um7_A113 Synapse-associated protein 102; PDZ, discs large h 99.29
1x5q_A110 LAP4 protein; PDZ domain, scribble homolog protein 99.29
1nf3_C128 PAR-6B; semi-CRIB motif, switch I and II, PDZ doma 99.29
2eei_A106 PDZ domain-containing protein 1; regulatory factor 99.29
2r4h_A112 Membrane-associated guanylate kinase, WW and PDZ c 99.29
2ehr_A117 INAD-like protein; PDZ domain, inadl protein, hina 99.29
3i4w_A104 Disks large homolog 4; alpha and beta protein, alt 99.29
2rcz_A81 Tight junction protein ZO-1; PDZ, domain-swapping, 99.29
1y7n_A90 Amyloid beta A4 precursor protein-binding family A 99.29
3l4f_D132 SH3 and multiple ankyrin repeat domains protein 1; 99.29
2djt_A104 Unnamed protein product; PDZ domain, structural ge 99.29
3egg_C170 Spinophilin; PP1, serine/threonine phosphatase, po 99.29
2cs5_A119 Tyrosine-protein phosphatase, non-receptor type 4; 99.28
2db5_A128 INAD-like protein; PDZ domain, hinadl, PALS1- asso 99.28
2qkv_A96 Inactivation-NO-after-potential D protein; PDZ dom 99.28
2g5m_B113 Neurabin-2; spinophilin, PDZ domain, CNS, synaptic 99.28
1wf7_A103 Enigma homologue protein; PDZ domain, structural g 99.28
2dls_A93 PDZ-rhogef, RHO guanine nucleotide exchange factor 99.28
2edv_A96 FERM and PDZ domain-containing protein 1; cytoskel 99.28
3tsv_A124 Tight junction protein ZO-1; PDZ, scaffolding, JAM 99.28
2o2t_A117 Multiple PDZ domain protein; structural protein, s 99.28
2eno_A120 Synaptojanin-2-binding protein; mitochondrial oute 99.28
1i16_A130 Interleukin 16, LCF; cytokine, lymphocyte chemoatt 99.27
1ueq_A123 Membrane associated guanylate kinase inverted-2 (M 99.27
1um1_A110 KIAA1849 protein, RSGI RUH-007; PDZ domain, human 99.27
3hpk_A125 Protein interacting with PRKCA 1; oxidized, PDZ do 99.27
2e7k_A91 Maguk P55 subfamily member 2; PDZ domain, MPP2 pro 99.27
2la8_A106 Inactivation-NO-after-potential D protein, KON-TI 99.27
2d92_A108 INAD-like protein; PDZ domain, inadl protein, hina 99.27
2kpk_A129 Membrane-associated guanylate kinase, WW and PDZ c 99.26
2koj_A111 Partitioning defective 3 homolog; PDZ domain, stru 99.26
2dlu_A111 INAD-like protein; PDZ domain, inadl protein, hina 99.26
1n7t_A103 99-MER peptide of densin-180-like protein; PDZ dom 99.26
2vsv_A109 Rhophilin-2; scaffold protein, RHO GTPase binding, 99.26
2pzd_A113 Serine protease HTRA2; PDZ domain, apoptosis, mito 99.26
1wi4_A109 Synip, syntaxin binding protein 4; syntaxin4-inter 99.26
1va8_A113 Maguk P55 subfamily member 5; PDZ domain, palmitoy 99.26
2lob_A112 Golgi-associated PDZ and coiled-coil motif-contai 98.91
1ufx_A103 KIAA1526 protein; PDZ domain, structural genomics, 99.25
2eeh_A100 PDZ domain-containing protein 7; structural genomi 99.25
2gzv_A114 PRKCA-binding protein; protein kinase C, PDZ domai 99.25
2z17_A104 Pleckstrin homology SEC7 and coiled-coil domains- 99.25
1wg6_A127 Hypothetical protein (riken cDNA 2810455B10); stru 99.25
1v6b_A118 Harmonin isoform A1; structural genomics, usher sy 99.24
2daz_A124 INAD-like protein; PDZ domain, inadl protein, hina 99.24
2dmz_A129 INAD-like protein; PDZ domain, inadl protein, hina 99.24
1vae_A111 Rhophilin 2, rhophilin, RHO GTPase binding protein 99.24
3bpu_A88 Membrane-associated guanylate kinase, WW and PDZ c 99.24
1whd_A100 RGS3, regulator of G-protein signaling 3; PDZ doma 99.23
2yt7_A101 Amyloid beta A4 precursor protein-binding family A 99.23
3kzd_A94 TIAM-1, T-lymphoma invasion and metastasis-inducin 99.23
1v5l_A103 PDZ and LIM domain 3; actinin alpha 2 associated L 99.22
1uju_A111 Scribble; PDZ domain, cellular signaling, structur 99.21
2dm8_A116 INAD-like protein; PDZ domain, inadl protein, hina 99.21
3sfj_A104 TAX1-binding protein 3; PDZ:peptide complex, signa 99.21
1x6d_A119 Interleukin-16; PDZ domain, lymphocyte chemoattrac 99.21
2jxo_A98 Ezrin-radixin-moesin-binding phosphoprotein 50; nh 99.21
2krg_A216 Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a 99.21
3qik_A101 Phosphatidylinositol 3,4,5-trisphosphate-dependen 99.2
2csj_A117 TJP2 protein; PDZ domain, structural genomics, NPP 99.2
1v5q_A122 GRIP1 homolog, glutamate receptor interacting prot 99.2
2iwn_A97 Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP 99.19
2kom_A121 Partitioning defective 3 homolog; PAR-3B, PDZ doma 99.19
2p3w_A112 Probable serine protease HTRA3; PDZ domain, phage 99.19
3r0h_A206 INAD, inactivation-NO-after-potential D protein; p 99.19
2eaq_A90 LIM domain only protein 7; conserved hypothetical 99.19
3soe_A113 Membrane-associated guanylate kinase, WW and PDZ c 99.19
1wfv_A103 Membrane associated guanylate kinase inverted-2; a 99.18
3i18_A100 LMO2051 protein; alpha-beta protein, structural ge 99.18
1tp5_A119 Presynaptic density protein 95; PDZ-peptide ligand 99.18
2edv_A96 FERM and PDZ domain-containing protein 1; cytoskel 99.18
3tsz_A 391 Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol 99.18
2h2b_A107 Tight junction protein ZO-1; PDZ domain, phage der 99.17
2yuy_A126 RHO GTPase activating protein 21; PDZ domain, stru 99.17
1uit_A117 Human discs large 5 protein; PDZ domain, HDLG5, ma 99.17
2vz5_A139 TAX1-binding protein 3; WNT signaling pathway, pro 99.16
2edp_A100 Fragment, shroom family member 4; APX/shroom famil 99.16
2yub_A118 LIMK-2, LIM domain kinase 2; PDZ domain, structura 99.15
2qbw_A 195 PDZ-fibronectin fusion protein; fibronectin PDZ, u 99.15
2qbw_A195 PDZ-fibronectin fusion protein; fibronectin PDZ, u 99.15
3k1r_A192 Harmonin; protein-protein complex, alternative spl 99.15
3shw_A 468 Tight junction protein ZO-1; PDZ-SH3-GUK supramodu 99.14
1z87_A263 Alpha-1-syntrophin; protein binding; NMR {Mus musc 99.13
2kjp_A91 Uncharacterized protein YLBL; mixed alpha-beta pro 99.13
3gsl_A196 Disks large homolog 4; PDZ domain, tandem, PSD-95, 99.13
1wif_A126 RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s 99.13
2i6v_A87 General secretion pathway protein C; EPSC, GSPC, P 99.13
1ujv_A96 Membrane associated guanylate kinase inverted-2 (M 99.12
3stj_A345 Protease DEGQ; serine protease, PDZ domain, protea 99.1
1um7_A113 Synapse-associated protein 102; PDZ, discs large h 99.1
2zpm_A91 Regulator of sigma E protease; metalloproteinase, 99.1
1vae_A111 Rhophilin 2, rhophilin, RHO GTPase binding protein 99.1
2kl1_A94 YLBL protein; structure genomics, structural genom 99.09
2d8i_A114 T-cell lymphoma invasion and metastasis 1 variant; 99.09
1x5n_A114 Harmonin; PDZ domain, usher syndrome 1C protein, a 99.09
1qau_A112 Neuronal nitric oxide synthase (residues 1-130); b 99.08
2lob_A112 Golgi-associated PDZ and coiled-coil motif-contai 98.67
2qt5_A200 Glutamate receptor-interacting protein 1; PDZ-pept 99.08
1uez_A101 KIAA1526 protein; PDZ domain, structural genomics, 99.07
1te0_A318 Protease DEGS; two domains, serine protease, PDZ, 99.07
3id1_A95 Regulator of sigma E protease; hydrolase, cell inn 99.07
1y8t_A324 Hypothetical protein RV0983; serine protease, stru 99.05
2i4s_A105 General secretion pathway protein C; EPSC, GSPC, P 99.05
1p1d_A196 PDZ45, glutamate receptor interacting protein; PDZ 99.04
3rle_A209 Golgi reassembly-stacking protein 2; PDZ, tether, 99.03
2kjd_A128 Sodium/hydrogen exchange regulatory cofactor NHE- 99.03
1fc6_A388 Photosystem II D1 protease; D1 C-terminal processi 99.02
3qo6_A348 Protease DO-like 1, chloroplastic; protease, HTRA, 99.02
3tsz_A 391 Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol 99.0
3shw_A 468 Tight junction protein ZO-1; PDZ-SH3-GUK supramodu 99.0
1wh1_A124 KIAA1095 protein; PDZ domain, structural genomics, 98.96
1w9e_A166 Syntenin 1; cell adhesion, adhesion/complex, PDZ d 98.94
2pzd_A113 Serine protease HTRA2; PDZ domain, apoptosis, mito 98.93
2hga_A125 Conserved protein MTH1368; GFT structural genomics 98.93
4fgm_A597 Aminopeptidase N family protein; structural genomi 98.92
1b8q_A127 Protein (neuronal nitric oxide synthase); PDZ doma 98.92
2kjp_A91 Uncharacterized protein YLBL; mixed alpha-beta pro 98.91
3id1_A95 Regulator of sigma E protease; hydrolase, cell inn 98.91
1lcy_A325 HTRA2 serine protease; apoptosis, PDZ domain, casp 98.88
3i18_A100 LMO2051 protein; alpha-beta protein, structural ge 98.87
2l97_A134 HTRA, putative serine protease; HTRA-PDZ, protein 98.87
2p3w_A112 Probable serine protease HTRA3; PDZ domain, phage 98.84
2krg_A 216 Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a 98.83
2i6v_A87 General secretion pathway protein C; EPSC, GSPC, P 98.83
2kl1_A94 YLBL protein; structure genomics, structural genom 98.81
2zpm_A91 Regulator of sigma E protease; metalloproteinase, 98.8
1te0_A318 Protease DEGS; two domains, serine protease, PDZ, 98.79
3stj_A345 Protease DEGQ; serine protease, PDZ domain, protea 98.75
2i4s_A105 General secretion pathway protein C; EPSC, GSPC, P 98.72
3num_A332 Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom 98.69
4a8c_A436 Periplasmic PH-dependent serine endoprotease DEGQ; 98.65
3pv2_A451 DEGQ; trypsin fold, PDZ domain, chaperone protease 98.58
2hga_A125 Conserved protein MTH1368; GFT structural genomics 98.58
3k50_A 403 Putative S41 protease; structural genomics, joint 98.57
3suz_A388 Amyloid beta A4 precursor protein-binding family 2 98.5
1y8t_A324 Hypothetical protein RV0983; serine protease, stru 98.49
1lcy_A325 HTRA2 serine protease; apoptosis, PDZ domain, casp 98.48
1fc6_A 388 Photosystem II D1 protease; D1 C-terminal processi 98.45
1k32_A1045 Tricorn protease; protein degradation, substrate g 98.37
4fgm_A597 Aminopeptidase N family protein; structural genomi 98.33
3qo6_A348 Protease DO-like 1, chloroplastic; protease, HTRA, 98.3
1ky9_A448 Protease DO, DEGP, HTRA; protein quality control, 98.27
3num_A332 Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom 98.24
3k50_A 403 Putative S41 protease; structural genomics, joint 98.09
1k32_A 1045 Tricorn protease; protein degradation, substrate g 97.51
4fln_A539 Protease DO-like 2, chloroplastic; protease, DEG, 97.29
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Back     alignment and structure
Probab=99.96  E-value=1e-26  Score=212.15  Aligned_cols=211  Identities=20%  Similarity=0.307  Sum_probs=173.2

Q ss_pred             cccceEEEEEEeeCCCccceEEeec--------CCceEEEEecCCCHHhhcC-CCCCCEEEEECCeeCCCCCHHHHHHHH
Q psy2263          12 KYHQMTKLFLCKDIHGKIGLRVAAI--------HEGVFVCLVQEGSPAALVG-LRFGDQILQVNGKTVAGSNMHQVHALL   82 (232)
Q Consensus        12 ~~~~~~~~~l~~~~~~~lGi~~~~~--------~~g~~V~~V~~~s~A~~ag-L~~GD~I~~Vng~~v~~~~~~~~~~~l   82 (232)
                      .....+++.+.+.. ++|||++.++        ..+++|..|.+++||+++| |+.||+|++|||.++.++++.++..++
T Consensus        56 ~~~~~~~v~l~k~~-~glGf~i~gg~~~~~~~~~~g~~V~~v~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l  134 (721)
T 2xkx_A           56 GEMEYEEITLERGN-SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEAL  134 (721)
T ss_pred             CCceEEEEEEEeCC-CCCCEEEeCCcCCcccCCCCCeEEEEeCCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHh
Confidence            44566788888887 5799999863        4679999999999999999 999999999999999999988888877


Q ss_pred             hhCCCCeEEEEEecCCc----eeeeEeecCCCCeeCeEEeC-----------Ce-EEEEecCChhhhcC-CCCCCEEEEE
Q psy2263          83 RNCPVNNISIVVRDRPF----ERNVTLHKDSAGHVGFQFKR-----------GQ-IIRLVKESSASRNG-LLTDHHILEV  145 (232)
Q Consensus        83 ~~~~~~~v~l~v~r~~~----~~~v~l~~~~~~~lg~~~~~-----------~~-~~~~~~~~~a~~~g-l~~gd~i~~v  145 (232)
                      +. .+..+.|++.|.+.    +.++.+.+.. ..+|+.+..           |. +..+.++++|+++| |+.||+|++|
T Consensus       135 ~~-~g~~v~l~v~R~~~~~~~~~~v~l~k~~-~~lG~~i~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~V  212 (721)
T 2xkx_A          135 KE-AGSIVRLYVMRRKPPAEKVMEIKLIKGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAV  212 (721)
T ss_pred             hc-cccccceEEEecccccccceeeeeeeec-CCCceeeccCCCccccCCCCceEEEEeCCCCchhhcCCCCCCCEEEEE
Confidence            74 47889999988653    4567776543 348888753           23 45788999999999 9999999999


Q ss_pred             CCeEeecccc----------------------cC----------------------------------------------
Q psy2263         146 NGQNVVGLKN----------------------DS----------------------------------------------  157 (232)
Q Consensus       146 ~g~~~~~~~~----------------------~~----------------------------------------------  157 (232)
                      ||.++.++.+                      ..                                              
T Consensus       213 ng~~v~~~~~~~~~~~l~~~~~~v~l~V~R~g~~~~~~~~~~p~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (721)
T 2xkx_A          213 NSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYS  292 (721)
T ss_pred             CCeeCCCCCHHHHHHHHHcCCCeEEEEEEeCCcccccCCCCCCCcccCCCCCcccccCCcccccccccccCCCCCCcccC
Confidence            9999877532                      00                                              


Q ss_pred             ------------------------CCccceEEe-----cCcEEE-EccCChhhhCC-CCCCCEEEEECCeEcCCCCHHHH
Q psy2263         158 ------------------------AGHVGFQFK-----RGQIIR-LVKESSASRNG-LLTDHHILEVNGQNVVGLKDKEI  206 (232)
Q Consensus       158 ------------------------~~~~g~~~~-----~g~v~~-v~~~s~a~~~G-l~~GD~Il~Vng~~~~~~~~~~~  206 (232)
                                              ...+||.+.     .|+++. |.++|+|+++| |++||+|++|||.++.+++++++
T Consensus       293 p~~~~~~~~~~~~~~~~~v~l~~~~~~lG~~i~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~  372 (721)
T 2xkx_A          293 PVAKDLLGEEDIPREPRRIVIHRGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQA  372 (721)
T ss_pred             CcccccccccccccceEEEEEEECCCCccEEEeccCCCCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHH
Confidence                                    012566653     356666 99999999999 99999999999999999999999


Q ss_pred             HHHHHhCCCeEEEEEeCCc
Q psy2263         207 REIVEKAPCVINLTIMPSY  225 (232)
Q Consensus       207 ~~~l~~~~~~~~l~v~r~~  225 (232)
                      +++|+..+..+.|.+.|+.
T Consensus       373 ~~~l~~~~~~v~L~v~r~~  391 (721)
T 2xkx_A          373 AIALKNAGQTVTIIAQYKP  391 (721)
T ss_pred             HHHHHhcCCeEEEEEEeCc
Confidence            9999998889999998765
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Back     alignment and structure
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Back     alignment and structure
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Back     alignment and structure
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Back     alignment and structure
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Back     alignment and structure
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Back     alignment and structure
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A Back     alignment and structure
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Back     alignment and structure
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A Back     alignment and structure
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Back     alignment and structure
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Back     alignment and structure
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana} Back     alignment and structure
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Back     alignment and structure
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Back     alignment and structure
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Back     alignment and structure
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Back     alignment and structure
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Back     alignment and structure
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Back     alignment and structure
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Back     alignment and structure
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Back     alignment and structure
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Back     alignment and structure
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Back     alignment and structure
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Back     alignment and structure
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Back     alignment and structure
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Back     alignment and structure
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Back     alignment and structure
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Back     alignment and structure
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Back     alignment and structure
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Back     alignment and structure
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Back     alignment and structure
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Back     alignment and structure
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Back     alignment and structure
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Back     alignment and structure
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Back     alignment and structure
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Back     alignment and structure
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Back     alignment and structure
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Back     alignment and structure
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Back     alignment and structure
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Back     alignment and structure
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Back     alignment and structure
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Back     alignment and structure
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0 Back     alignment and structure
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Back     alignment and structure
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Back     alignment and structure
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Back     alignment and structure
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Back     alignment and structure
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Back     alignment and structure
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Back     alignment and structure
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A* Back     alignment and structure
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Back     alignment and structure
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Back     alignment and structure
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0 Back     alignment and structure
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Back     alignment and structure
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Back     alignment and structure
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Back     alignment and structure
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Back     alignment and structure
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Back     alignment and structure
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Back     alignment and structure
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Back     alignment and structure
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Back     alignment and structure
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Back     alignment and structure
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A Back     alignment and structure
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Back     alignment and structure
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Back     alignment and structure
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Back     alignment and structure
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A Back     alignment and structure
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Back     alignment and structure
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Back     alignment and structure
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Back     alignment and structure
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Back     alignment and structure
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Back     alignment and structure
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Back     alignment and structure
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Back     alignment and structure
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Back     alignment and structure
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Back     alignment and structure
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A Back     alignment and structure
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Back     alignment and structure
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Back     alignment and structure
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Back     alignment and structure
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Back     alignment and structure
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Back     alignment and structure
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Back     alignment and structure
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Back     alignment and structure
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Back     alignment and structure
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Back     alignment and structure
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Back     alignment and structure
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Back     alignment and structure
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Back     alignment and structure
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Back     alignment and structure
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Back     alignment and structure
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Back     alignment and structure
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Back     alignment and structure
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Back     alignment and structure
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Back     alignment and structure
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Back     alignment and structure
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Back     alignment and structure
>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Back     alignment and structure
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Back     alignment and structure
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Back     alignment and structure
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Back     alignment and structure
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens} Back     alignment and structure
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Back     alignment and structure
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Back     alignment and structure
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Back     alignment and structure
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Back     alignment and structure
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Back     alignment and structure
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Back     alignment and structure
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Back     alignment and structure
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Back     alignment and structure
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Back     alignment and structure
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens} Back     alignment and structure
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0 Back     alignment and structure
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Back     alignment and structure
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Back     alignment and structure
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Back     alignment and structure
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Back     alignment and structure
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Back     alignment and structure
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae} Back     alignment and structure
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Back     alignment and structure
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Back     alignment and structure
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Back     alignment and structure
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Back     alignment and structure
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Back     alignment and structure
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Back     alignment and structure
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Back     alignment and structure
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Back     alignment and structure
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Back     alignment and structure
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Back     alignment and structure
>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Back     alignment and structure
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A Back     alignment and structure
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Back     alignment and structure
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Back     alignment and structure
>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Back     alignment and structure
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Back     alignment and structure
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Back     alignment and structure
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Back     alignment and structure
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Back     alignment and structure
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Back     alignment and structure
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Back     alignment and structure
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Back     alignment and structure
>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A Back     alignment and structure
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Back     alignment and structure
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Back     alignment and structure
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Back     alignment and structure
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Back     alignment and structure
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Back     alignment and structure
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Back     alignment and structure
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Back     alignment and structure
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Back     alignment and structure
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Back     alignment and structure
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Back     alignment and structure
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A* Back     alignment and structure
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Back     alignment and structure
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Back     alignment and structure
>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens} Back     alignment and structure
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Back     alignment and structure
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0 Back     alignment and structure
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Back     alignment and structure
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A Back     alignment and structure
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Back     alignment and structure
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Back     alignment and structure
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Back     alignment and structure
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Back     alignment and structure
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Back     alignment and structure
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Back     alignment and structure
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Back     alignment and structure
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Back     alignment and structure
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Back     alignment and structure
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Back     alignment and structure
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Back     alignment and structure
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Back     alignment and structure
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Back     alignment and structure
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Back     alignment and structure
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Back     alignment and structure
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Back     alignment and structure
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Back     alignment and structure
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Back     alignment and structure
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Back     alignment and structure
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Back     alignment and structure
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Back     alignment and structure
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Back     alignment and structure
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Back     alignment and structure
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Back     alignment and structure
>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Back     alignment and structure
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Back     alignment and structure
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Back     alignment and structure
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Back     alignment and structure
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Back     alignment and structure
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Back     alignment and structure
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Back     alignment and structure
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Back     alignment and structure
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Back     alignment and structure
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Back     alignment and structure
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4 Back     alignment and structure
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Back     alignment and structure
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Back     alignment and structure
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Back     alignment and structure
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Back     alignment and structure
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Back     alignment and structure
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Back     alignment and structure
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Back     alignment and structure
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Back     alignment and structure
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Back     alignment and structure
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Back     alignment and structure
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Back     alignment and structure
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Back     alignment and structure
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Back     alignment and structure
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Back     alignment and structure
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Back     alignment and structure
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Back     alignment and structure
>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A Back     alignment and structure
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Back     alignment and structure
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Back     alignment and structure
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Back     alignment and structure
>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens} Back     alignment and structure
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Back     alignment and structure
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Back     alignment and structure
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Back     alignment and structure
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Back     alignment and structure
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens} Back     alignment and structure
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Back     alignment and structure
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Back     alignment and structure
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Back     alignment and structure
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A Back     alignment and structure
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Back     alignment and structure
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Back     alignment and structure
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Back     alignment and structure
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Back     alignment and structure
>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A Back     alignment and structure
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A Back     alignment and structure
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A Back     alignment and structure
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Back     alignment and structure
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Back     alignment and structure
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis} Back     alignment and structure
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Back     alignment and structure
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Back     alignment and structure
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5 Back     alignment and structure
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli} Back     alignment and structure
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A Back     alignment and structure
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Back     alignment and structure
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans} Back     alignment and structure
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Back     alignment and structure
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Back     alignment and structure
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Back     alignment and structure
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Back     alignment and structure
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A Back     alignment and structure
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A Back     alignment and structure
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A Back     alignment and structure
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5 Back     alignment and structure
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Back     alignment and structure
>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A Back     alignment and structure
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Back     alignment and structure
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A Back     alignment and structure
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana} Back     alignment and structure
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Back     alignment and structure
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Back     alignment and structure
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Back     alignment and structure
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Back     alignment and structure
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4 Back     alignment and structure
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6 Back     alignment and structure
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR} Back     alignment and structure
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Back     alignment and structure
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis} Back     alignment and structure
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A Back     alignment and structure
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1 Back     alignment and structure
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A Back     alignment and structure
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae} Back     alignment and structure
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens} Back     alignment and structure
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Back     alignment and structure
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5 Back     alignment and structure
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans} Back     alignment and structure
>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A Back     alignment and structure
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A Back     alignment and structure
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli} Back     alignment and structure
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5 Back     alignment and structure
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A Back     alignment and structure
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Back     alignment and structure
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A Back     alignment and structure
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6 Back     alignment and structure
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343} Back     alignment and structure
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Back     alignment and structure
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A Back     alignment and structure
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1 Back     alignment and structure
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A Back     alignment and structure
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Back     alignment and structure
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR} Back     alignment and structure
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana} Back     alignment and structure
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Back     alignment and structure
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A Back     alignment and structure
>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343} Back     alignment and structure
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* Back     alignment and structure
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 232
d1w9ea185 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie 1e-19
d1w9ea185 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie 2e-09
d1w9ea185 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie 9e-08
d1y7na179 b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote 1e-12
d1y7na179 b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote 7e-08
d1y7na179 b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote 4e-07
d1uita_117 b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma 8e-12
d1r6ja_82 b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta 9e-12
d1r6ja_82 b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta 2e-08
d1r6ja_82 b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta 1e-07
d1vaea_111 b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [T 2e-11
d1m5za_91 b.36.1.1 (A:) Glutamate receptor interacting prote 2e-10
d1m5za_91 b.36.1.1 (A:) Glutamate receptor interacting prote 2e-06
d1m5za_91 b.36.1.1 (A:) Glutamate receptor interacting prote 4e-05
d1g9oa_91 b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, 3e-10
d1g9oa_91 b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, 4e-07
d1g9oa_91 b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, 2e-06
d2f5ya177 b.36.1.1 (A:19-95) Regulator of G-protein signalin 3e-10
d2f5ya177 b.36.1.1 (A:19-95) Regulator of G-protein signalin 6e-06
d2f5ya177 b.36.1.1 (A:19-95) Regulator of G-protein signalin 3e-05
d1va8a1100 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M 3e-10
d1va8a1100 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M 3e-07
d1va8a1100 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M 9e-05
d1wh1a_124 b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human 6e-10
d1wh1a_124 b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human 0.001
d1wi2a_104 b.36.1.1 (A:) PDZ domain containing protein 11, Pd 9e-10
d1wi2a_104 b.36.1.1 (A:) PDZ domain containing protein 11, Pd 1e-05
d1wi2a_104 b.36.1.1 (A:) PDZ domain containing protein 11, Pd 4e-04
d1ujda_117 b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human 1e-09
d1ujda_117 b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human 2e-07
d2csja1104 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj 2e-09
d2csja1104 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj 2e-04
d2csja1104 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj 4e-04
d1x5ra199 b.36.1.1 (A:8-106) Glutamate receptor interacting 2e-09
d1x5ra199 b.36.1.1 (A:8-106) Glutamate receptor interacting 3e-04
d1x5ra199 b.36.1.1 (A:8-106) Glutamate receptor interacting 0.001
d2cs5a1106 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no 2e-09
d2cs5a1106 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no 7e-05
d2cs5a1106 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no 0.002
d1x6da1107 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap 4e-09
d1x6da1107 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap 2e-04
d1x6da1107 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap 5e-04
d1qaua_112 b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS 5e-09
d1v5qa_122 b.36.1.1 (A:) Glutamate receptor interacting prote 5e-09
d1v5qa_122 b.36.1.1 (A:) Glutamate receptor interacting prote 0.002
d1v5qa_122 b.36.1.1 (A:) Glutamate receptor interacting prote 0.003
d1x5na1101 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) 6e-09
d1x5na1101 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) 0.001
d1x5na1101 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) 0.002
d1ueza_101 b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien 7e-09
d1wifa_126 b.36.1.1 (A:) hypothetical PDZ domain containing p 7e-09
d1rgwa_85 b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo 8e-09
d1rgwa_85 b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo 0.001
d2fcfa196 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein 1e-08
d2fcfa196 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein 1e-04
d2fcfa196 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein 0.003
d1kwaa_88 b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta 1e-08
d1kwaa_88 b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta 3e-08
d1kwaa_88 b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta 3e-06
d1q3oa_104 b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv 2e-08
d1q3oa_104 b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv 1e-06
d1uf1a_128 b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien 2e-08
d1uf1a_128 b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien 1e-05
d1uf1a_128 b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien 4e-05
d1ueqa_123 b.36.1.1 (A:) Membrane associated guanylate kinase 2e-08
d1ueqa_123 b.36.1.1 (A:) Membrane associated guanylate kinase 5e-06
d1ueqa_123 b.36.1.1 (A:) Membrane associated guanylate kinase 2e-04
d1x5qa197 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom 2e-08
d1x5qa197 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom 5e-05
d1x5qa197 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom 8e-05
d1um1a_110 b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human 3e-08
d1um1a_110 b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human 1e-04
d2z9ia188 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium 3e-08
d1vb7a_94 b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus 4e-08
d1vb7a_94 b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus 0.002
d1rgra_93 b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus 7e-08
d1rgra_93 b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus 0.002
d1i16a_130 b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) 8e-08
d1v6ba_118 b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI 8e-08
d1n7ea_95 b.36.1.1 (A:) Glutamate receptor-interacting prote 8e-08
d1n7ea_95 b.36.1.1 (A:) Glutamate receptor-interacting prote 3e-04
d1wf7a_103 b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu 9e-08
d1wf8a194 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens 1e-07
d1wf8a194 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens 8e-05
d1wf8a194 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens 0.001
d2cssa1108 b.36.1.1 (A:8-115) Regulating synaptic membrane ex 1e-07
d2cssa1108 b.36.1.1 (A:8-115) Regulating synaptic membrane ex 5e-04
d2cssa1108 b.36.1.1 (A:8-115) Regulating synaptic membrane ex 7e-04
d1fc6a392 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal 1e-07
d1wfva_103 b.36.1.1 (A:) Membrane associated guanylate kinase 2e-07
d1wfva_103 b.36.1.1 (A:) Membrane associated guanylate kinase 1e-04
d1wfva_103 b.36.1.1 (A:) Membrane associated guanylate kinase 0.001
d1v62a_117 b.36.1.1 (A:) Glutamate receptor interacting prote 2e-07
d1v62a_117 b.36.1.1 (A:) Glutamate receptor interacting prote 0.002
d1qava_90 b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta 3e-07
d1qava_90 b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta 2e-05
d1qava_90 b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta 1e-04
d1ihja_94 b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga 3e-07
d1ihja_94 b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga 3e-04
d1ihja_94 b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga 9e-04
d1ufxa_103 b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien 4e-07
d2fe5a192 b.36.1.1 (A:223-314) Synapse-associated protein 10 5e-07
d1v5la_103 b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote 7e-07
d1ujua_111 b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap 1e-06
d1ujua_111 b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap 4e-04
d1ky9b288 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-t 1e-06
d1x45a185 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei 1e-06
d1x45a185 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei 0.002
d1x45a185 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei 0.003
d1uepa_103 b.36.1.1 (A:) Membrane associated guanylate kinase 1e-06
d1uepa_103 b.36.1.1 (A:) Membrane associated guanylate kinase 7e-06
d1uepa_103 b.36.1.1 (A:) Membrane associated guanylate kinase 2e-04
d1tp5a1102 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat 1e-06
d1tp5a1102 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat 8e-05
d1tp5a1102 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat 2e-04
d1ujva_96 b.36.1.1 (A:) Membrane associated guanylate kinase 2e-06
d1ozia_99 b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu 2e-06
d1ozia_99 b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu 0.002
d1wi4a196 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou 2e-06
d1wg6a_127 b.36.1.1 (A:) Partitioning-defective 3-like protei 2e-06
d1wg6a_127 b.36.1.1 (A:) Partitioning-defective 3-like protei 0.004
d2h3la1103 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) 2e-06
d1lcya1100 b.36.1.4 (A:226-325) Mitochondrial serine protease 2e-06
d1rzxa_98 b.36.1.1 (A:) GTPase-binding domain of the cell po 3e-06
d1rzxa_98 b.36.1.1 (A:) GTPase-binding domain of the cell po 9e-06
d1whaa_105 b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap 6e-06
d1p1da299 b.36.1.1 (A:115-213) Glutamate receptor interactin 7e-06
d1t2ma192 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta 1e-05
d2fnea188 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein 1e-05
d2fnea188 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein 2e-04
d2fnea188 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein 2e-04
d1uhpa_107 b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human 1e-05
d1uhpa_107 b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human 0.002
d1uewa_114 b.36.1.1 (A:) Membrane associated guanylate kinase 3e-05
d2i6va187 b.36.1.5 (A:219-305) General secretion pathway pro 5e-05
d2hgaa1103 b.36.1.6 (A:23-125) Uncharacterized protein MTH136 7e-05
d2f0aa192 b.36.1.1 (A:251-342) Segment polarity protein dish 7e-05
>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.0 bits (192), Expect = 1e-19
 Identities = 42/78 (53%), Positives = 56/78 (71%)

Query: 21 LCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHA 80
          LCKD  GKIGLR+ +I  G+FV LVQ  SPA+LVGLRFGDQ+LQ+NG+  AG +  + H 
Sbjct: 8  LCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHK 67

Query: 81 LLRNCPVNNISIVVRDRP 98
          +L+      I++ +RDRP
Sbjct: 68 VLKQAFGEKITMTIRDRP 85
>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure
>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure
>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117 Back     information, alignment and structure
>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure
>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure
>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82 Back     information, alignment and structure
>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111 Back     information, alignment and structure
>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91 Back     information, alignment and structure
>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91 Back     information, alignment and structure
>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91 Back     information, alignment and structure
>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91 Back     information, alignment and structure
>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91 Back     information, alignment and structure
>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91 Back     information, alignment and structure
>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77 Back     information, alignment and structure
>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77 Back     information, alignment and structure
>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77 Back     information, alignment and structure
>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100 Back     information, alignment and structure
>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100 Back     information, alignment and structure
>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100 Back     information, alignment and structure
>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104 Back     information, alignment and structure
>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104 Back     information, alignment and structure
>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104 Back     information, alignment and structure
>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117 Back     information, alignment and structure
>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117 Back     information, alignment and structure
>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104 Back     information, alignment and structure
>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104 Back     information, alignment and structure
>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104 Back     information, alignment and structure
>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99 Back     information, alignment and structure
>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99 Back     information, alignment and structure
>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99 Back     information, alignment and structure
>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106 Back     information, alignment and structure
>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106 Back     information, alignment and structure
>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106 Back     information, alignment and structure
>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107 Back     information, alignment and structure
>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107 Back     information, alignment and structure
>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107 Back     information, alignment and structure
>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112 Back     information, alignment and structure
>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure
>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure
>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122 Back     information, alignment and structure
>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 Back     information, alignment and structure
>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 Back     information, alignment and structure
>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101 Back     information, alignment and structure
>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101 Back     information, alignment and structure
>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126 Back     information, alignment and structure
>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure
>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure
>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96 Back     information, alignment and structure
>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96 Back     information, alignment and structure
>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96 Back     information, alignment and structure
>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104 Back     information, alignment and structure
>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104 Back     information, alignment and structure
>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128 Back     information, alignment and structure
>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128 Back     information, alignment and structure
>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128 Back     information, alignment and structure
>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123 Back     information, alignment and structure
>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123 Back     information, alignment and structure
>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123 Back     information, alignment and structure
>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Back     information, alignment and structure
>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Back     information, alignment and structure
>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97 Back     information, alignment and structure
>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110 Back     information, alignment and structure
>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110 Back     information, alignment and structure
>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 88 Back     information, alignment and structure
>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 Back     information, alignment and structure
>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 Back     information, alignment and structure
>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93 Back     information, alignment and structure
>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93 Back     information, alignment and structure
>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130 Back     information, alignment and structure
>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118 Back     information, alignment and structure
>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95 Back     information, alignment and structure
>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95 Back     information, alignment and structure
>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103 Back     information, alignment and structure
>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94 Back     information, alignment and structure
>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94 Back     information, alignment and structure
>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94 Back     information, alignment and structure
>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108 Back     information, alignment and structure
>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108 Back     information, alignment and structure
>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108 Back     information, alignment and structure
>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]} Length = 92 Back     information, alignment and structure
>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117 Back     information, alignment and structure
>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117 Back     information, alignment and structure
>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90 Back     information, alignment and structure
>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90 Back     information, alignment and structure
>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90 Back     information, alignment and structure
>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94 Back     information, alignment and structure
>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94 Back     information, alignment and structure
>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94 Back     information, alignment and structure
>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92 Back     information, alignment and structure
>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103 Back     information, alignment and structure
>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 88 Back     information, alignment and structure
>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure
>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure
>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85 Back     information, alignment and structure
>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102 Back     information, alignment and structure
>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102 Back     information, alignment and structure
>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102 Back     information, alignment and structure
>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96 Back     information, alignment and structure
>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99 Back     information, alignment and structure
>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99 Back     information, alignment and structure
>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96 Back     information, alignment and structure
>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127 Back     information, alignment and structure
>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127 Back     information, alignment and structure
>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103 Back     information, alignment and structure
>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]} Length = 100 Back     information, alignment and structure
>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98 Back     information, alignment and structure
>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98 Back     information, alignment and structure
>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105 Back     information, alignment and structure
>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99 Back     information, alignment and structure
>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92 Back     information, alignment and structure
>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107 Back     information, alignment and structure
>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107 Back     information, alignment and structure
>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114 Back     information, alignment and structure
>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]} Length = 87 Back     information, alignment and structure
>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 103 Back     information, alignment and structure
>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query232
d1w9ea185 Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.75
d1r6ja_82 Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.66
d2fcfa196 Multiple PDZ domain protein {Human (Homo sapiens) 99.66
d1y7na179 Amyloid beta A4 precursor protein-binding family A 99.65
d1va8a1100 Maguk p55 subfamily member 5 {Mouse (Mus musculus) 99.64
d1g9oa_91 Na+/H+ exchanger regulatory factor, NHERF {Human ( 99.63
d1m5za_91 Glutamate receptor interacting protein {Rat (Rattu 99.62
d1g9oa_91 Na+/H+ exchanger regulatory factor, NHERF {Human ( 99.62
d1qava_90 Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} 99.62
d1kwaa_88 Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} 99.62
d2fcfa196 Multiple PDZ domain protein {Human (Homo sapiens) 99.61
d1wi2a_104 PDZ domain containing protein 11, Pdzk11 {Mouse (M 99.61
d1ihja_94 Inad {Fruit fly (Drosophila melanogaster) [TaxId: 99.61
d1r6ja_82 Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.6
d2f5ya177 Regulator of G-protein signaling 3, RGS3 {Human (H 99.6
d2fe5a192 Synapse-associated protein 102 {Human (Homo sapien 99.6
d1rgwa_85 Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax 99.59
d1rgra_93 Synaptic protein PSD-95 {Rat (Rattus norvegicus) [ 99.59
d1qaua_112 Neuronal nitric oxide synthase, NNOS {Rat (Rattus 99.58
d2f5ya177 Regulator of G-protein signaling 3, RGS3 {Human (H 99.58
d1rgwa_85 Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax 99.57
d1ozia_99 Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1 99.57
d1x45a185 Amyloid beta A4 precursor protein-binding family A 99.57
d1uita_117 Discs large 5 protein KIAA0583 {Human (Homo sapien 99.57
d1uhpa_107 Hypothetical protein KIAA1095 {Human (Homo sapiens 99.56
d1t2ma192 Afadin {Human (Homo sapiens) [TaxId: 9606]} 99.56
d1m5za_91 Glutamate receptor interacting protein {Rat (Rattu 99.56
d2f0aa192 Segment polarity protein dishevelled homolog Dvl-2 99.56
d1tp5a1102 Synaptic protein PSD-95 {Rat (Rattus norvegicus) [ 99.55
d1q3oa_104 Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId 99.55
d1ihja_94 Inad {Fruit fly (Drosophila melanogaster) [TaxId: 99.55
d1ozia_99 Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1 99.55
d1x6da1107 Interleukin 16 {Human (Homo sapiens) [TaxId: 9606] 99.54
d1x5qa197 Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 99.54
d1wf8a194 Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} 99.54
d1rgra_93 Synaptic protein PSD-95 {Rat (Rattus norvegicus) [ 99.54
d1p1da299 Glutamate receptor interacting protein {Rat (Rattu 99.54
d1fc6a392 Photosystem II D1 C-terminal processing protease { 99.53
d1x5qa197 Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 99.53
d2fe5a192 Synapse-associated protein 102 {Human (Homo sapien 99.53
d1q3oa_104 Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId 99.53
d1um1a_110 Hypothetical protein KIAA1849 {Human (Homo sapiens 99.53
d1qava_90 Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} 99.53
d1uhpa_107 Hypothetical protein KIAA1095 {Human (Homo sapiens 99.53
d1whaa_105 Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 99.53
d1uf1a_128 KIAA1526 protein {Human (Homo sapiens) [TaxId: 960 99.53
d1vb7a_94 PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta 99.53
d1t2ma192 Afadin {Human (Homo sapiens) [TaxId: 9606]} 99.52
d1kwaa_88 Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} 99.52
d1ujua_111 Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 99.52
d1vaea_111 Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} 99.52
d2fnea188 Multiple PDZ domain protein {Human (Homo sapiens) 99.52
d1n7ea_95 Glutamate receptor-interacting protein 1, GRIP1 {R 99.51
d1wf8a194 Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} 99.51
d1n7ea_95 Glutamate receptor-interacting protein 1, GRIP1 {R 99.51
d1rzxa_98 GTPase-binding domain of the cell polarity protein 99.51
d2h3la1103 Erbin {Human (Homo sapiens) [TaxId: 9606]} 99.5
d1tp5a1102 Synaptic protein PSD-95 {Rat (Rattus norvegicus) [ 99.5
d2h3la1103 Erbin {Human (Homo sapiens) [TaxId: 9606]} 99.5
d1v62a_117 Glutamate receptor interacting protein 2, GRIP2 (K 99.49
d1rzxa_98 GTPase-binding domain of the cell polarity protein 99.49
d1i16a_130 Interleukin 16 {Human (Homo sapiens) [TaxId: 9606] 99.49
d2csja1104 Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc 99.49
d1whaa_105 Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 99.49
d1x5na1101 Harmonin {Human (Homo sapiens) [TaxId: 9606]} 99.49
d1p1da299 Glutamate receptor interacting protein {Rat (Rattu 99.49
d1uewa_114 Membrane associated guanylate kinase inverted-2 (M 99.48
d1vb7a_94 PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta 99.48
d1w9ea185 Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} 99.48
d1wf7a_103 Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1 99.48
d1wi2a_104 PDZ domain containing protein 11, Pdzk11 {Mouse (M 99.48
d1wifa_126 hypothetical PDZ domain containing protein Uqcrc2 99.48
d1uewa_114 Membrane associated guanylate kinase inverted-2 (M 99.47
d1ueqa_123 Membrane associated guanylate kinase inverted-2 (M 99.47
d1y7na179 Amyloid beta A4 precursor protein-binding family A 99.47
d2cs5a1106 Tyrosine-protein phosphatase non-receptor type 4, 99.47
d1ujua_111 Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 99.46
d1um1a_110 Hypothetical protein KIAA1849 {Human (Homo sapiens 99.46
d2z9ia188 Protease PepD {Mycobacterium tuberculosis [TaxId: 99.46
d1v5la_103 Alpha-actinin-2 associated LIM protein {Mouse (Mus 99.46
d1va8a1100 Maguk p55 subfamily member 5 {Mouse (Mus musculus) 99.46
d1uita_117 Discs large 5 protein KIAA0583 {Human (Homo sapien 99.46
d1wi4a196 Syntaxin binding protein 4 {Mouse (Mus musculus) [ 99.45
d1x5ra199 Glutamate receptor interacting protein 2, GRIP2 (K 99.45
d2fnea188 Multiple PDZ domain protein {Human (Homo sapiens) 99.45
d1uf1a_128 KIAA1526 protein {Human (Homo sapiens) [TaxId: 960 99.44
d1uepa_103 Membrane associated guanylate kinase inverted-2 (M 99.44
d1ueza_101 KIAA1526 protein {Human (Homo sapiens) [TaxId: 960 99.44
d1x6da1107 Interleukin 16 {Human (Homo sapiens) [TaxId: 9606] 99.44
d2cssa1108 Regulating synaptic membrane exocytosis protein 1, 99.44
d1x5na1101 Harmonin {Human (Homo sapiens) [TaxId: 9606]} 99.44
d1lcya1100 Mitochondrial serine protease HtrA2 {Human (Homo s 99.43
d2f0aa192 Segment polarity protein dishevelled homolog Dvl-2 99.43
d2cs5a1106 Tyrosine-protein phosphatase non-receptor type 4, 99.43
d1ujda_117 Hypothetical protein KIAA0559 {Human (Homo sapiens 99.43
d1v5qa_122 Glutamate receptor interacting protein {Mouse (Mus 99.42
d1vaea_111 Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} 99.42
d1i16a_130 Interleukin 16 {Human (Homo sapiens) [TaxId: 9606] 99.41
d1ujda_117 Hypothetical protein KIAA0559 {Human (Homo sapiens 99.4
d1ky9a194 Protease Do (DegP, HtrA), C-terminal domains {Esch 99.4
d2csja1104 Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc 99.4
d1uepa_103 Membrane associated guanylate kinase inverted-2 (M 99.39
d2cssa1108 Regulating synaptic membrane exocytosis protein 1, 99.39
d1v62a_117 Glutamate receptor interacting protein 2, GRIP2 (K 99.39
d1v6ba_118 Harmonin {Mouse (Mus musculus) [TaxId: 10090]} 99.39
d1x45a185 Amyloid beta A4 precursor protein-binding family A 99.38
d1wi4a196 Syntaxin binding protein 4 {Mouse (Mus musculus) [ 99.38
d1wfva_103 Membrane associated guanylate kinase inverted-2 (M 99.38
d1qaua_112 Neuronal nitric oxide synthase, NNOS {Rat (Rattus 99.37
d1v6ba_118 Harmonin {Mouse (Mus musculus) [TaxId: 10090]} 99.37
d1ueqa_123 Membrane associated guanylate kinase inverted-2 (M 99.37
d1wfva_103 Membrane associated guanylate kinase inverted-2 (M 99.36
d1wf7a_103 Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1 99.35
d1fc6a392 Photosystem II D1 C-terminal processing protease { 99.35
d1ujva_96 Membrane associated guanylate kinase inverted-2 (M 99.35
d1k32a191 Tricorn protease {Archaeon Thermoplasma acidophilu 99.35
d1sota199 Stress sensor protease DegS, C-terminal domain {Es 99.34
d1v5qa_122 Glutamate receptor interacting protein {Mouse (Mus 99.32
d1v5la_103 Alpha-actinin-2 associated LIM protein {Mouse (Mus 99.32
d1wifa_126 hypothetical PDZ domain containing protein Uqcrc2 99.31
d1wg6a_127 Partitioning-defective 3-like protein, PAR3-L (RIK 99.31
d1ueza_101 KIAA1526 protein {Human (Homo sapiens) [TaxId: 960 99.31
d1wh1a_124 Hypothetical protein KIAA1095 {Human (Homo sapiens 99.3
d1wg6a_127 Partitioning-defective 3-like protein, PAR3-L (RIK 99.29
d1ufxa_103 KIAA1526 protein {Human (Homo sapiens) [TaxId: 960 99.28
d1ufxa_103 KIAA1526 protein {Human (Homo sapiens) [TaxId: 960 99.28
d1x5ra199 Glutamate receptor interacting protein 2, GRIP2 (K 99.27
d1ky9b288 Protease Do (DegP, HtrA), C-terminal domains {Esch 99.27
d1ky9b288 Protease Do (DegP, HtrA), C-terminal domains {Esch 99.21
d2hgaa1103 Uncharacterized protein MTH1368 {Methanobacterium 99.2
d1ujva_96 Membrane associated guanylate kinase inverted-2 (M 99.19
d2z9ia188 Protease PepD {Mycobacterium tuberculosis [TaxId: 99.17
d2i6va187 General secretion pathway protein C, EpsC {Vibrio 99.14
d1sota199 Stress sensor protease DegS, C-terminal domain {Es 99.12
d1ky9a194 Protease Do (DegP, HtrA), C-terminal domains {Esch 99.07
d1lcya1100 Mitochondrial serine protease HtrA2 {Human (Homo s 99.03
d1wh1a_124 Hypothetical protein KIAA1095 {Human (Homo sapiens 99.03
d1k32a191 Tricorn protease {Archaeon Thermoplasma acidophilu 99.01
d2hgaa1103 Uncharacterized protein MTH1368 {Methanobacterium 98.85
d2i6va187 General secretion pathway protein C, EpsC {Vibrio 98.84
>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.4e-17  Score=109.89  Aligned_cols=82  Identities=50%  Similarity=0.864  Sum_probs=76.8

Q ss_pred             eEEEEEEeeCCCccceEEeecCCceEEEEecCCCHHhhcCCCCCCEEEEECCeeCCCCCHHHHHHHHhhCCCCeEEEEEe
Q psy2263          16 MTKLFLCKDIHGKIGLRVAAIHEGVFVCLVQEGSPAALVGLRFGDQILQVNGKTVAGSNMHQVHALLRNCPVNNISIVVR   95 (232)
Q Consensus        16 ~~~~~l~~~~~~~lGi~~~~~~~g~~V~~V~~~s~A~~agL~~GD~I~~Vng~~v~~~~~~~~~~~l~~~~~~~v~l~v~   95 (232)
                      +|++.+.|.+.++|||++.....+++|..|.++|||+++||++||+|++|||+++.++++.++..+++..++..+.++++
T Consensus         3 pr~v~l~k~~~~~lG~~l~~~~~g~~V~~v~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~~~v~l~v~   82 (85)
T d1w9ea1           3 PREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIR   82 (85)
T ss_dssp             CEEEEEECCTTSCCSEEEEEETTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEEEE
T ss_pred             CEEEEEEeCCCCCEeEEEEeCCCCEEEEEECCCCHHHHcCCCCccEEEEECCEEeCCCCHHHHHHHHhcCCCCEEEEEEe
Confidence            68899999999999999998889999999999999999999999999999999999999999999999887888999887


Q ss_pred             cC
Q psy2263          96 DR   97 (232)
Q Consensus        96 r~   97 (232)
                      ++
T Consensus        83 ~r   84 (85)
T d1w9ea1          83 DR   84 (85)
T ss_dssp             CC
T ss_pred             CC
Confidence            64
>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]} Back     information, alignment and structure
>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]} Back     information, alignment and structure
>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure