Psyllid ID: psy2267

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460--
MYRLPRVLRSQNLTPLLRRAYAKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVSLEYPVNIDIHNSL
cccccHHHHccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccccccccEEEEEcccccccccccccEEEEEcccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHEEEEEccccHHHHHHHHHHHHHcccccEEEEEccccccccEEEEEcccccccccccccEEcccccEEEccccEEEEEccccccHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHcccEEEEEEEEcccccHHHHHHHHHHHHHHccEEEEEcccccccccccccccccccEEEEEcccEEEEEcccccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccc
cccccHEEccccHHHHHHHHHcEEEEEHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccccEEEccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcEccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccEEEEcccccccEEEEEccEEEcccEcccccccEccccEEEEEccEEEcEEcEEccHHHcHHHHHHHHHHHccEEEEEcEEcHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHccccEEHHcccEEEcEEEHHHHcccEEEEEEcccEEEEEcccccccccccHcccccHcHHHHHHHHHHHHHHHHccccccEcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHcc
myrlprvlrsqnlTPLLRRAYAKdvrfgpevrglmLQGVDILADAVAVtmgpkgrnvileqswgspkitkdgvTVAKGIELKDKFQNIGAKLVQDVAnntneeagdgtTTATVLARAIAKEGFEkiskganpieiRRGVMLAVETIKTHLKelskpvttpeeIAQVATISANGDKAVGELISDAMKRVGKEgvitvkdgktlTDELEVIegmkfdrgyispyfintakgaKVEFQDALVLLSESKISSIQSIIPALelanskrkplvilaedvdgeaLSTLVVNRLKIGLQVAavkapgfgdnrkATLQDLAVATggivfgdeaspvkledlqatdlgsvgeivitkddtlilkvtsappctckscekapcitkNLITHYFIDIELLLIsfdspqgkgkkedIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKvggssevsleypvnidihnsl
myrlprvlrsqnltpllrrAYAKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNvileqswgspkitkDGVTVAKGIELKDKFQNIGAKLVQDVANNtneeagdgtttaTVLARAIAKEgfekiskganpieirrGVMLAVETIKTHlkelskpvttpeEIAQVatisangdkAVGELISDAMkrvgkegvitvkdgktltdeLEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPalelanskrKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTsappctckscekAPCITKNLITHYFIDIELLLISfdspqgkgkkedidrraDQIRDqieattsdyeREKLQERLARLASGVAVLkvggssevsleypvnidihnsl
MYRLPRVLRSQNLTPLLRRAYAKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLseskissiqsiiPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKEdidrradqirdqiEATTSDYEREKLQERLARLASGVAVLKVGGSSEVSLEYPVNIDIHNSL
***********NLTPLLRRAYAKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVAN********GTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLISF***************************************ARLASGVAVLKVGGSSEVSLEYPVNI******
******************RAYAKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLK***********IAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELL**************DIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVSLEYPVNIDIHNSL
MYRLPRVLRSQNLTPLLRRAYAKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLISFDS************RADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVSLEYPVNIDIHNSL
*YRLPRVLRSQNLTPLLRRAYAKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKVGGSSEVSLEYPVNIDIH*SL
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MYRLPRVLRSQNLTPLLRRAYAKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKxxxxxxxxxxxxxxxxxxxxxxxxxxxxERLARLASGVAVLKVGGSSEVSLEYPVNIDIHNSL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query462 2.2.26 [Sep-21-2011]
O02649 573 60 kDa heat shock protein yes N/A 0.909 0.732 0.742 0.0
Q5ZL72 573 60 kDa heat shock protein yes N/A 0.885 0.713 0.690 1e-177
P18687 573 60 kDa heat shock protein yes N/A 0.885 0.713 0.687 1e-176
Q9VMN5 576 60 kDa heat shock protein no N/A 0.885 0.710 0.685 1e-176
P63039 573 60 kDa heat shock protein yes N/A 0.885 0.713 0.685 1e-176
P63038 573 60 kDa heat shock protein yes N/A 0.885 0.713 0.685 1e-176
P10809 573 60 kDa heat shock protein yes N/A 0.885 0.713 0.683 1e-175
Q5NVM5 573 60 kDa heat shock protein yes N/A 0.885 0.713 0.676 1e-174
P31081 573 60 kDa heat shock protein yes N/A 0.885 0.713 0.679 1e-173
P50140 568 Chaperonin homolog Hsp-60 yes N/A 0.876 0.713 0.642 1e-161
>sp|O02649|CH60_DROME 60 kDa heat shock protein, mitochondrial OS=Drosophila melanogaster GN=Hsp60 PE=1 SV=3 Back     alignment and function desciption
 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/463 (74%), Positives = 391/463 (84%), Gaps = 43/463 (9%)

Query: 1   MYRLPRVL-RSQNLTPLLRRAYAKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVIL 59
           M+RLP  L RS     L  R YAKDVRFGPEVR +MLQGVD+LADAVAVTMGPKGRNVI+
Sbjct: 1   MFRLPVSLARSSISRQLAMRGYAKDVRFGPEVRAMMLQGVDVLADAVAVTMGPKGRNVII 60

Query: 60  EQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIA 119
           EQSWGSPKITKDGVTVAK IELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIA
Sbjct: 61  EQSWGSPKITKDGVTVAKSIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIA 120

Query: 120 KEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGE 179
           KEGFEKISKGANP+EIRRGVMLAVET+K +LK +S+PV+TPEEIAQVATISANGD+A+G 
Sbjct: 121 KEGFEKISKGANPVEIRRGVMLAVETVKDNLKTMSRPVSTPEEIAQVATISANGDQAIGN 180

Query: 180 LISDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALV 239
           LIS+AMK+VG++GVITVKDGKTLTDELEVIEGMKFDRGYISPYFIN++KGAKVEFQDAL+
Sbjct: 181 LISEAMKKVGRDGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINSSKGAKVEFQDALL 240

Query: 240 LLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPG 299
           LLSE KISS+QSIIPALELAN++RKPLVI+AED+DGEALSTLVVNRLKIGLQVAAVKAPG
Sbjct: 241 LLSEKKISSVQSIIPALELANAQRKPLVIIAEDIDGEALSTLVVNRLKIGLQVAAVKAPG 300

Query: 300 FGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAP 359
           FGDNRK+TL D+A+A+GGIVFGD+A  VKLED++ +DLG VGE+VITKDDTL+LK     
Sbjct: 301 FGDNRKSTLTDMAIASGGIVFGDDADLVKLEDVKVSDLGQVGEVVITKDDTLLLK----- 355

Query: 360 PCTCKSCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTS 419
                                               GKGKK+D+ RRA+QI+DQIE TTS
Sbjct: 356 ------------------------------------GKGKKDDVLRRANQIKDQIEDTTS 379

Query: 420 DYEREKLQERLARLASGVAVLKVGGSSEVSLEYPVNIDIHNSL 462
           +YE+EKLQERLARLASGVA+L+VGGSSEV +    +  +H++L
Sbjct: 380 EYEKEKLQERLARLASGVALLRVGGSSEVEVNEKKD-RVHDAL 421
Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
Drosophila melanogaster (taxid: 7227)
>sp|Q5ZL72|CH60_CHICK 60 kDa heat shock protein, mitochondrial OS=Gallus gallus GN=HSPD1 PE=1 SV=1 Back     alignment and function description
>sp|P18687|CH60_CRIGR 60 kDa heat shock protein, mitochondrial OS=Cricetulus griseus GN=HSPD1 PE=2 SV=1 Back     alignment and function description
>sp|Q9VMN5|CH60C_DROME 60 kDa heat shock protein homolog 2, mitochondrial OS=Drosophila melanogaster GN=Hsp60C PE=2 SV=2 Back     alignment and function description
>sp|P63039|CH60_RAT 60 kDa heat shock protein, mitochondrial OS=Rattus norvegicus GN=Hspd1 PE=1 SV=1 Back     alignment and function description
>sp|P63038|CH60_MOUSE 60 kDa heat shock protein, mitochondrial OS=Mus musculus GN=Hspd1 PE=1 SV=1 Back     alignment and function description
>sp|P10809|CH60_HUMAN 60 kDa heat shock protein, mitochondrial OS=Homo sapiens GN=HSPD1 PE=1 SV=2 Back     alignment and function description
>sp|Q5NVM5|CH60_PONAB 60 kDa heat shock protein, mitochondrial OS=Pongo abelii GN=HSPD1 PE=2 SV=1 Back     alignment and function description
>sp|P31081|CH60_BOVIN 60 kDa heat shock protein, mitochondrial OS=Bos taurus GN=HSPD1 PE=1 SV=2 Back     alignment and function description
>sp|P50140|CH60_CAEEL Chaperonin homolog Hsp-60, mitochondrial OS=Caenorhabditis elegans GN=hsp-60 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query462
307199045 608 60 kDa heat shock protein, mitochondrial 0.909 0.690 0.774 0.0
307173631 1514 60 kDa heat shock protein, mitochondrial 0.880 0.268 0.792 0.0
332019713 594 60 kDa heat shock protein, mitochondrial 0.909 0.707 0.777 0.0
322787697 566 hypothetical protein SINV_14312 [Solenop 0.909 0.742 0.779 0.0
156541962 572 PREDICTED: 60 kDa heat shock protein, mi 0.909 0.734 0.765 0.0
226442059 572 heat shock protein 60 [Pteromalus puparu 0.909 0.734 0.762 0.0
383849830 570 PREDICTED: 60 kDa heat shock protein, mi 0.909 0.736 0.770 0.0
66547450 570 PREDICTED: 60 kDa heat shock protein, mi 0.909 0.736 0.770 0.0
340722472 570 PREDICTED: LOW QUALITY PROTEIN: 60 kDa h 0.909 0.736 0.772 0.0
380014538 570 PREDICTED: 60 kDa heat shock protein, mi 0.909 0.736 0.772 0.0
>gi|307199045|gb|EFN79769.1| 60 kDa heat shock protein, mitochondrial [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/462 (77%), Positives = 391/462 (84%), Gaps = 42/462 (9%)

Query: 1   MYRLPRVLRSQNLTPLLRRAYAKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILE 60
           M+RLP +LR   L  L  R YAKDVRFG EVR LMLQGVDILADAVAVTMGPKGRNVILE
Sbjct: 38  MHRLPTMLRGTALRQLQARTYAKDVRFGAEVRALMLQGVDILADAVAVTMGPKGRNVILE 97

Query: 61  QSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAK 120
           QSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTAT+LARAIAK
Sbjct: 98  QSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATILARAIAK 157

Query: 121 EGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGEL 180
           EGFEKISKGANP+EIRRGVMLAVE IK  LK LSKPVTTPEEIAQVATISANGD+AVG L
Sbjct: 158 EGFEKISKGANPVEIRRGVMLAVEKIKDELKMLSKPVTTPEEIAQVATISANGDQAVGNL 217

Query: 181 ISDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVL 240
           ISDAMK+VGKEGVITVKDGKTL DELE+IEGMKFDRGYISPYFIN++KGAKVEFQDAL+L
Sbjct: 218 ISDAMKKVGKEGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINSSKGAKVEFQDALLL 277

Query: 241 LSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGF 300
            SE KISS+Q+IIPALELAN++RKPLVI+AEDVDGEALSTLVVNRLKIGLQVAAVKAPGF
Sbjct: 278 FSEKKISSVQNIIPALELANAQRKPLVIIAEDVDGEALSTLVVNRLKIGLQVAAVKAPGF 337

Query: 301 GDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPP 360
           GDNRKATLQD+A++TGGIVFGD+A+ +KLED+QA+DLG VGE++ITKDDTLILK      
Sbjct: 338 GDNRKATLQDMAISTGGIVFGDDANLIKLEDVQASDLGQVGELIITKDDTLILK------ 391

Query: 361 CTCKSCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSD 420
                                              GKGKK DIDRRADQIRDQIE TTS+
Sbjct: 392 -----------------------------------GKGKKADIDRRADQIRDQIENTTSE 416

Query: 421 YEREKLQERLARLASGVAVLKVGGSSEVSLEYPVNIDIHNSL 462
           YE+EKLQERLARLASGVAVL+VGGSSEV +    +  +H++L
Sbjct: 417 YEKEKLQERLARLASGVAVLRVGGSSEVEVNEKKD-RVHDAL 457

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307173631|gb|EFN64482.1| 60 kDa heat shock protein, mitochondrial [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332019713|gb|EGI60183.1| 60 kDa heat shock protein, mitochondrial [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|322787697|gb|EFZ13709.1| hypothetical protein SINV_14312 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|156541962|ref|XP_001600045.1| PREDICTED: 60 kDa heat shock protein, mitochondrial-like isoform 1 [Nasonia vitripennis] gi|345497194|ref|XP_003427933.1| PREDICTED: 60 kDa heat shock protein, mitochondrial-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|226442059|gb|ACO57619.1| heat shock protein 60 [Pteromalus puparum] Back     alignment and taxonomy information
>gi|383849830|ref|XP_003700538.1| PREDICTED: 60 kDa heat shock protein, mitochondrial-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|66547450|ref|XP_392899.2| PREDICTED: 60 kDa heat shock protein, mitochondrial-like [Apis mellifera] Back     alignment and taxonomy information
>gi|340722472|ref|XP_003399629.1| PREDICTED: LOW QUALITY PROTEIN: 60 kDa heat shock protein, mitochondrial-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|380014538|ref|XP_003691286.1| PREDICTED: 60 kDa heat shock protein, mitochondrial-like [Apis florea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query462
FB|FBgn0015245 573 Hsp60 "Heat shock protein 60" 0.766 0.617 0.814 4e-164
FB|FBgn0031728 576 Hsp60C "Hsp60C" [Drosophila me 0.766 0.614 0.766 9.1e-154
UNIPROTKB|Q5ZL72 573 HSPD1 "60 kDa heat shock prote 0.766 0.617 0.757 1.5e-153
MGI|MGI:96242 573 Hspd1 "heat shock protein 1 (c 0.766 0.617 0.754 3.5e-152
RGD|621314 573 Hspd1 "heat shock protein 1 (c 0.766 0.617 0.754 3.5e-152
UNIPROTKB|P63039 573 Hspd1 "60 kDa heat shock prote 0.766 0.617 0.754 3.5e-152
UNIPROTKB|E2QUU5 573 HSPD1 "60 kDa heat shock prote 0.766 0.617 0.752 9.3e-152
UNIPROTKB|F1MUZ9 573 HSPD1 "60 kDa heat shock prote 0.766 0.617 0.752 1.2e-151
UNIPROTKB|P10809 573 HSPD1 "60 kDa heat shock prote 0.766 0.617 0.749 2.5e-151
UNIPROTKB|F1SMZ7 575 HSPD1 "Uncharacterized protein 0.766 0.615 0.747 1.1e-150
FB|FBgn0015245 Hsp60 "Heat shock protein 60" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1457 (517.9 bits), Expect = 4.0e-164, Sum P(2) = 4.0e-164
 Identities = 289/355 (81%), Positives = 322/355 (90%)

Query:     1 MYRLPRVL-RSQNLTPLLRRAYAKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVIL 59
             M+RLP  L RS     L  R YAKDVRFGPEVR +MLQGVD+LADAVAVTMGPKGRNVI+
Sbjct:     1 MFRLPVSLARSSISRQLAMRGYAKDVRFGPEVRAMMLQGVDVLADAVAVTMGPKGRNVII 60

Query:    60 EQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIA 119
             EQSWGSPKITKDGVTVAK IELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIA
Sbjct:    61 EQSWGSPKITKDGVTVAKSIELKDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIA 120

Query:   120 KEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGE 179
             KEGFEKISKGANP+EIRRGVMLAVET+K +LK +S+PV+TPEEIAQVATISANGD+A+G 
Sbjct:   121 KEGFEKISKGANPVEIRRGVMLAVETVKDNLKTMSRPVSTPEEIAQVATISANGDQAIGN 180

Query:   180 LISDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALV 239
             LIS+AMK+VG++GVITVKDGKTLTDELEVIEGMKFDRGYISPYFIN++KGAKVEFQDAL+
Sbjct:   181 LISEAMKKVGRDGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINSSKGAKVEFQDALL 240

Query:   240 LLXXXXXXXXXXXXPALELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPG 299
             LL            PALELAN++RKPLVI+AED+DGEALSTLVVNRLKIGLQVAAVKAPG
Sbjct:   241 LLSEKKISSVQSIIPALELANAQRKPLVIIAEDIDGEALSTLVVNRLKIGLQVAAVKAPG 300

Query:   300 FGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILK 354
             FGDNRK+TL D+A+A+GGIVFGD+A  VKLED++ +DLG VGE+VITKDDTL+LK
Sbjct:   301 FGDNRKSTLTDMAIASGGIVFGDDADLVKLEDVKVSDLGQVGEVVITKDDTLLLK 355
GO:0005739 "mitochondrion" evidence=IDA
GO:0009408 "response to heat" evidence=IEP;ISS;NAS
GO:0051082 "unfolded protein binding" evidence=ISS
GO:0006457 "protein folding" evidence=ISS
GO:0005759 "mitochondrial matrix" evidence=ISS
GO:0006458 "'de novo' protein folding" evidence=ISS
GO:0006626 "protein targeting to mitochondrion" evidence=ISS
GO:0042026 "protein refolding" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005811 "lipid particle" evidence=IDA
GO:0005875 "microtubule associated complex" evidence=IDA
GO:0034605 "cellular response to heat" evidence=IEP
GO:0005743 "mitochondrial inner membrane" evidence=IDA
GO:0007005 "mitochondrion organization" evidence=IMP
FB|FBgn0031728 Hsp60C "Hsp60C" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZL72 HSPD1 "60 kDa heat shock protein, mitochondrial" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:96242 Hspd1 "heat shock protein 1 (chaperonin)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|621314 Hspd1 "heat shock protein 1 (chaperonin)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P63039 Hspd1 "60 kDa heat shock protein, mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2QUU5 HSPD1 "60 kDa heat shock protein, mitochondrial" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MUZ9 HSPD1 "60 kDa heat shock protein, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P10809 HSPD1 "60 kDa heat shock protein, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SMZ7 HSPD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A4YS25CH602_BRASONo assigned EC number0.53020.83980.7106yesN/A
P10809CH60_HUMANNo assigned EC number0.68350.88520.7137yesN/A
Q2IZ16CH601_RHOP2No assigned EC number0.51160.83980.7054yesN/A
A8LJP9CH60_DINSHNo assigned EC number0.51160.83980.7093yesN/A
Q1GRD4CH602_SPHALNo assigned EC number0.51390.83980.7198yesN/A
Q5LV15CH60_RUEPONo assigned EC number0.51160.83980.7106yesN/A
B6IU98CH60_RHOCSNo assigned EC number0.52090.83980.7106yesN/A
Q09864HSP60_SCHPONo assigned EC number0.53810.84410.6701yesN/A
Q89DA6CH607_BRAJANo assigned EC number0.51620.83980.7145yesN/A
P63038CH60_MOUSENo assigned EC number0.68570.88520.7137yesN/A
P63039CH60_RATNo assigned EC number0.68570.88520.7137yesN/A
P29197CH60A_ARATHNo assigned EC number0.53250.83980.6724yesN/A
A5EM76CH604_BRASBNo assigned EC number0.53020.83980.7106yesN/A
A8I5R5CH602_AZOC5No assigned EC number0.52550.83980.7158yesN/A
Q1QK71CH602_NITHXNo assigned EC number0.53020.83980.7106yesN/A
O02649CH60_DROMENo assigned EC number0.74290.90900.7329yesN/A
P50140CH60_CAEELNo assigned EC number0.64220.87660.7130yesN/A
B2ICU4CH60_BEII9No assigned EC number0.52790.83980.7080yesN/A
Q20X88CH602_RHOPBNo assigned EC number0.52790.83980.7041yesN/A
Q5NVM5CH60_PONABNo assigned EC number0.67690.88520.7137yesN/A
Q5ZL72CH60_CHICKNo assigned EC number0.69010.88520.7137yesN/A
Q2NBL8CH601_ERYLHNo assigned EC number0.51620.83980.7198yesN/A
P19882HSP60_YEASTNo assigned EC number0.53640.88310.7132yesN/A
Q3SQJ5CH602_NITWNNo assigned EC number0.53480.83980.7119yesN/A
P31081CH60_BOVINNo assigned EC number0.67910.88520.7137yesN/A
Q07TB7CH601_RHOP5No assigned EC number0.51620.83980.7093yesN/A
Q162U5CH602_ROSDONo assigned EC number0.51390.83980.7093yesN/A
Q5B041HSP60_EMENINo assigned EC number0.56220.84630.6649yesN/A
Q5QVT4CH60_IDILONo assigned EC number0.51390.83980.7080yesN/A
Q130Z3CH602_RHOPSNo assigned EC number0.51390.83980.7054yesN/A
P18687CH60_CRIGRNo assigned EC number0.68790.88520.7137yesN/A
P60364CH601_RHOPANo assigned EC number0.50460.83980.7093yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query462
cd03344 520 cd03344, GroEL, GroEL_like type I chaperonin 0.0
PRK00013 542 PRK00013, groEL, chaperonin GroEL; Reviewed 0.0
PTZ00114 555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 0.0
PRK12849 542 PRK12849, groEL, chaperonin GroEL; Reviewed 0.0
TIGR02348 524 TIGR02348, GroEL, chaperonin GroL 1e-176
PRK12850 544 PRK12850, groEL, chaperonin GroEL; Reviewed 1e-166
PRK12851 541 PRK12851, groEL, chaperonin GroEL; Reviewed 1e-157
PRK12852 545 PRK12852, groEL, chaperonin GroEL; Reviewed 1e-157
PRK14104 546 PRK14104, PRK14104, chaperonin GroEL; Provisional 1e-142
CHL00093 529 CHL00093, groEL, chaperonin GroEL 1e-130
PLN03167 600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 1e-107
COG0459 524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-104
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 1e-92
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 7e-67
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 5e-27
cd03343517 cd03343, cpn60, cpn60 chaperonin family 2e-16
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 7e-15
cd03338515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 8e-12
TIGR02343532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 8e-11
TIGR02342517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 2e-10
TIGR02345523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 4e-10
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 4e-10
PTZ00212533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 7e-10
cd03340522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 1e-09
cd03339526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 7e-09
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 8e-09
TIGR02344525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 9e-08
TIGR02340536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 2e-07
cd03335527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 4e-07
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 9e-07
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 4e-06
TIGR02346531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 7e-06
cd03341472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 1e-05
TIGR02347531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 2e-04
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information 
 Score =  628 bits (1622), Expect = 0.0
 Identities = 240/429 (55%), Positives = 316/429 (73%), Gaps = 42/429 (9%)

Query: 23  KDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELK 82
           KD++FG E R  +L+GV+ LADAV VT+GPKGRNV++E+S+GSPKITKDGVTVAK IEL+
Sbjct: 1   KDIKFGEEARKALLRGVNKLADAVKVTLGPKGRNVVIEKSFGSPKITKDGVTVAKEIELE 60

Query: 83  DKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLA 142
           D F+N+GA+LV++VA+ TN+ AGDGTTTATVLARAI KEG + ++ GANP++++RG+  A
Sbjct: 61  DPFENMGAQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKA 120

Query: 143 VETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKTL 202
           VE +   LK+LSKPV T EEIAQVATISANGD+ +GELI++AM++VGK+GVITV++GKTL
Sbjct: 121 VEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKTL 180

Query: 203 TDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSK 262
             ELEV+EGM+FDRGY+SPYF+   +  +VE ++  +LL++ KISSIQ ++P LEL    
Sbjct: 181 ETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSIQELLPILELVAKA 240

Query: 263 RKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGD 322
            +PL+I+AEDV+GEAL+TLVVN+L+ GL+V AVKAPGFGD RKA L+D+A+ TGG V  +
Sbjct: 241 GRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTVISE 300

Query: 323 EASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFI 382
           E   +KLED+   DLG   ++V+TKDDT I+                             
Sbjct: 301 ELG-LKLEDVTLEDLGRAKKVVVTKDDTTIIG---------------------------- 331

Query: 383 DIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLKV 442
                        G G K  I  R  QIR QIE TTSDY++EKLQERLA+L+ GVAV+KV
Sbjct: 332 -------------GAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLAKLSGGVAVIKV 378

Query: 443 GGSSEVSLE 451
           GG++EV L+
Sbjct: 379 GGATEVELK 387

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis. Length = 520
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 462
KOG0356|consensus 550 100.0
PLN03167 600 Chaperonin-60 beta subunit; Provisional 100.0
PRK12852 545 groEL chaperonin GroEL; Reviewed 100.0
PRK14104 546 chaperonin GroEL; Provisional 100.0
PTZ00114 555 Heat shock protein 60; Provisional 100.0
TIGR02348 524 GroEL chaperonin GroL. This family consists of Gro 100.0
PRK12849 542 groEL chaperonin GroEL; Reviewed 100.0
PRK00013 542 groEL chaperonin GroEL; Reviewed 100.0
PRK12850 544 groEL chaperonin GroEL; Reviewed 100.0
CHL00093 529 groEL chaperonin GroEL 100.0
PRK12851 541 groEL chaperonin GroEL; Reviewed 100.0
cd03344 520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
COG0459 524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
KOG0358|consensus534 100.0
KOG0361|consensus543 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
KOG0362|consensus537 100.0
KOG0363|consensus527 100.0
KOG0360|consensus545 100.0
KOG0364|consensus527 100.0
KOG0359|consensus520 100.0
KOG0357|consensus400 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 99.91
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 99.89
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 99.35
KOG0230|consensus 1598 98.93
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 97.22
PRK12849542 groEL chaperonin GroEL; Reviewed 92.62
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 92.04
PTZ00114555 Heat shock protein 60; Provisional 91.6
PRK12850544 groEL chaperonin GroEL; Reviewed 90.99
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 90.4
PRK00013542 groEL chaperonin GroEL; Reviewed 90.17
PRK12852545 groEL chaperonin GroEL; Reviewed 89.95
PRK14104546 chaperonin GroEL; Provisional 89.81
PLN03167600 Chaperonin-60 beta subunit; Provisional 88.48
CHL00093529 groEL chaperonin GroEL 88.41
PRK12851541 groEL chaperonin GroEL; Reviewed 88.22
PTZ00212533 T-complex protein 1 subunit beta; Provisional 85.36
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 82.76
>KOG0356|consensus Back     alignment and domain information 
Probab=100.00  E-value=5e-90  Score=707.91  Aligned_cols=398  Identities=73%  Similarity=1.098  Sum_probs=390.0

Q ss_pred             HHHhhhhhhhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHH
Q psy2267          16 LLRRAYAKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQD   95 (462)
Q Consensus        16 ~~~~~~~k~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~   95 (462)
                      ..+| ++|++.||.++|..+++|++.|||+|.+||||+|||++|++.+|+|+|||||+|++++++++|+|+|.||+|+++
T Consensus        11 ~~~r-~ak~i~fg~~~r~~ll~Gv~~Ladav~~TlgpKgrnViieq~~gsPkvtkdgvTva~si~l~d~~~n~gaklvq~   89 (550)
T KOG0356|consen   11 KCVR-YAKDIKFGKDVRAKLLQGVDLLADAVAVTLGPKGRNVIIEQSWGSPKVTKDGVTVAKSIELKDKYENIGAKLVQD   89 (550)
T ss_pred             cccc-cccccccCHHHHHHHHhhHHHHHHHhhhhccCCcceEEcccccCCCceecCCceeeccccccchhhhhccHHHHH
Confidence            3444 899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcccccCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHcCCCc
Q psy2267          96 VANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDK  175 (462)
Q Consensus        96 ~a~~q~~~~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~  175 (462)
                      ++.++|+.+||||||+++||++|..++.+-+.+|.+|.+|++|+.+|++.+++.|+++++||++++++.+||++|+|+|.
T Consensus        90 va~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiSAngD~  169 (550)
T KOG0356|consen   90 VANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATISANGDK  169 (550)
T ss_pred             HHhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCCcH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHhccCceEEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEecccccCCHHhHHHH
Q psy2267         176 AVGELISDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPA  255 (462)
Q Consensus       176 ~i~~li~~A~~~vg~~g~I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~ki~s~~~i~~~  255 (462)
                      .++++|++|+.++|++|+|++++|+++.||+++++||.||+||+||||+++.+..+++|++|.+|++++||+++++|+|.
T Consensus       170 ~ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kki~~v~~ivp~  249 (550)
T KOG0356|consen  170 EIGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKKISSVQSIVPA  249 (550)
T ss_pred             HHHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhhhhHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHHHhCCeEeccCCCCCccCCCCCC
Q psy2267         256 LELANSKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQAT  335 (462)
Q Consensus       256 le~i~~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~~TGa~vis~~~~~~~l~~~~~~  335 (462)
                      ||...+..+||+|+++||+.++|.+|++|++++++||||||+|+||+.|+..|.|||.+|||+++.++..-++++..+++
T Consensus       250 LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v~~~e~~~l~le~~~~~  329 (550)
T KOG0356|consen  250 LELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATVFGEELSTLNLEDAKLE  329 (550)
T ss_pred             HHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhhhccchhhcccccCchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999988433889999999


Q ss_pred             CCceeeEEEEeeCceEEEEecCCCCeeEEeechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHH
Q psy2267         336 DLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKEDIDRRADQIRDQIE  415 (462)
Q Consensus       336 ~LG~a~~v~i~~~~t~ii~~~~~~~~TI~sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e~i~~r~~~~~~~~~  415 (462)
                      +||.|.++.++++++.++.                                         |.++++++..|++|++..++
T Consensus       330 dLG~~~evvvtkd~t~ll~-----------------------------------------g~~~~~~v~~rIeqik~~~e  368 (550)
T KOG0356|consen  330 DLGEVGEVVVTKDDTMLLK-----------------------------------------GKGNKAQVEGRIEQIKEMIE  368 (550)
T ss_pred             hcCcceeEEEecCcceeeC-----------------------------------------CCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999                                         99999999999999999999


Q ss_pred             hcCChHHHHHHHHHHHhhcCCeEEEEeccccccccccccc
Q psy2267         416 ATTSDYEREKLQERLARLASGVAVLKVGGSSEVSLEYPVN  455 (462)
Q Consensus       416 ~~~~~~~~~~l~~r~~~l~~~~a~~~vg~~~~~~~~~~~~  455 (462)
                      .+.++|++++|+||+++|+||+|||+|||.||+|+.|||+
T Consensus       369 ~t~~~ye~ekl~er~a~ls~gvavi~vGg~se~Ev~ekk~  408 (550)
T KOG0356|consen  369 ETTSDYEKEKLNERLAKLSGGVAVIKVGGHSEVEVNEKKD  408 (550)
T ss_pred             hhhhhhhHhHHHHHHHHhcCCeEEEEecCcchhhhhhhhh
Confidence            9999999999999999999999999999999999999997

>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>KOG0358|consensus Back     alignment and domain information
>KOG0361|consensus Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>KOG0362|consensus Back     alignment and domain information
>KOG0363|consensus Back     alignment and domain information
>KOG0360|consensus Back     alignment and domain information
>KOG0364|consensus Back     alignment and domain information
>KOG0359|consensus Back     alignment and domain information
>KOG0357|consensus Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0230|consensus Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query462
1iok_A 545 Crystal Structure Of Chaperonin-60 From Paracoccus 1e-107
2eu1_A 548 Crystal Structure Of The Chaperonin Groel-E461k Len 1e-105
4aaq_A 548 Atp-Triggered Molecular Mechanics Of The Chaperonin 1e-105
1j4z_A 547 Structural And Mechanistic Basis For Allostery In T 1e-105
1aon_A 547 Crystal Structure Of The Asymmetric Chaperonin Comp 1e-105
2yey_A 524 Crystal Structure Of The Allosteric-Defective Chape 1e-105
1pcq_A 524 Crystal Structure Of Groel-Groes Length = 524 1e-105
3c9v_A 526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 1e-105
1kp8_A 547 Structural Basis For Groel-Assisted Protein Folding 1e-104
1ss8_A 524 Groel Length = 524 1e-104
1sx3_A 525 Groel14-(Atpgammas)14 Length = 525 1e-104
1gr5_A 547 Solution Structure Of Apo Groel By Cryo-Electron Mi 1e-104
1grl_A 548 The Crystal Structure Of The Bacterial Chaperonin G 1e-103
3cau_A 526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 1e-103
1oel_A 547 Conformational Variability In The Refined Structure 1e-103
1we3_A 543 Crystal Structure Of The Chaperonin Complex Cpn60CP 2e-95
3rtk_A 546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 8e-91
1sjp_A 504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 1e-78
1la1_A192 Gro-El Fragment (Apical Domain) Comprising Residues 2e-37
1fya_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 1e-36
1fy9_A193 Crystal Structure Of The Hexa-Substituted Mutant Of 2e-36
1kid_A203 Groel (Hsp60 Class) Fragment (Apical Domain) Compri 2e-35
3osx_A201 Crystal Structure Of Apical Domain Of Insecticidal 3e-35
1jon_A155 Groel (Hsp60 Class) Fragment Comprising Residues 19 1e-31
1dk7_A146 Crystal Structure Of An Isolated Apical Domain Of G 1e-31
3m6c_A194 Crystal Structure Of Mycobacterium Tuberculosis Gro 6e-29
1srv_A145 Thermus Thermophilus Groel (Hsp60 Class) Fragment ( 9e-29
1q3r_A548 Crystal Structure Of The Chaperonin From Thermococc 8e-15
1q2v_A548 Crystal Structure Of The Chaperonin From Thermococc 6e-14
1q3s_A548 Crystal Structure Of The Chaperonin From Thermococc 1e-13
1a6d_A545 Thermosome From T. Acidophilum Length = 545 3e-12
1a6d_B543 Thermosome From T. Acidophilum Length = 543 1e-11
3izh_A513 Mm-Cpn D386a With Atp Length = 513 1e-10
3los_A543 Atomic Model Of Mm-Cpn In The Closed State Length = 1e-10
3izi_A513 Mm-Cpn Rls With Atp Length = 513 9e-10
3izk_A491 Mm-Cpn Rls Deltalid With Atp Length = 491 1e-09
3iyf_A521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 1e-09
3rus_A543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 1e-09
3izn_A491 Mm-Cpn Deltalid With Atp Length = 491 1e-09
3j02_A491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 1e-09
3p9d_E562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-09
3iyg_H515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 1e-08
3iyg_D518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 4e-08
3iyg_E515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 5e-08
3ko1_A553 Cystal Structure Of Thermosome From Acidianus Tengc 5e-08
3iyg_B513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 5e-07
3aq1_B500 Open State Monomer Of A Group Ii Chaperonin From Me 1e-06
3iyg_A529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-06
3p9d_D528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-06
3p9d_B527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 7e-06
3p9d_C 590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-05
3p9d_G550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 2e-05
3p9d_A 559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-05
3iyg_G515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 7e-05
3iyg_Z517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-04
3p9d_F 546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-04
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure 
Iteration: 1

 Score =  383 bits (984), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/430 (46%), Positives = 286/430 (66%), Gaps = 42/430 (9%)
Query: 22  AKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIEL 81
           AK+V+F  + R  ML+GV+ILADAV VT+GPKGRNV++++S+G+P+ITKDGV+VAK IEL
Sbjct: 3   AKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIEL 62
Query: 82  KDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVML 141
            DKF+N+GA++V++VA+ TN+EAGDGTTTATVLA+AI +EG + ++ G NP++++RG+ +
Sbjct: 63  SDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDV 122
Query: 142 AVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKT 201
           A   +   +K  ++PV    E+AQV TISANG+  +G+ I++AM+RVG EGVITV++ K 
Sbjct: 123 ATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKG 182
Query: 202 LTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLXXXXXXXXXXXXPALELANS 261
           +  E+EV+EGM+FDRGY+SPYF+  A     E +DA +LL            P LE    
Sbjct: 183 METEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQ 242
Query: 262 KRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFG 321
            +KPL+I+AEDV+GEAL+TLVVN+L+ GL++AAVKAPGFGD RKA LQD+A+ TGG V  
Sbjct: 243 SQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVIS 302
Query: 322 DEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYF 381
           ++   +KLE++    LG   ++ I KD+T I+                            
Sbjct: 303 EDLG-MKLENVTIDMLGRAKKVSINKDNTTIV---------------------------- 333
Query: 382 IDIELLLISFDSPQGKGKKEXXXXXXXXXXXXXEATTSDYEREKLQERLARLASGVAVLK 441
                         G G+K              E TTSDY+REKLQER+A+LA GVAV++
Sbjct: 334 -------------DGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIR 380
Query: 442 VGGSSEVSLE 451
           VGG +E+ ++
Sbjct: 381 VGGMTEIEVK 390
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure
>pdb|1LA1|A Chain A, Gro-El Fragment (Apical Domain) Comprising Residues 188-379 Length = 192 Back     alignment and structure
>pdb|1FYA|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|1FY9|A Chain A, Crystal Structure Of The Hexa-Substituted Mutant Of The Molecular Chaperonin Groel Apical Domain Length = 193 Back     alignment and structure
>pdb|1KID|A Chain A, Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 191-376, Mutant With Ala 262 Replaced With Leu And Ile 267 Replaced With Met Length = 203 Back     alignment and structure
>pdb|3OSX|A Chain A, Crystal Structure Of Apical Domain Of Insecticidal Groel From Xenorhapdus Nematophila Length = 201 Back     alignment and structure
>pdb|1JON|A Chain A, Groel (Hsp60 Class) Fragment Comprising Residues 191-345 Length = 155 Back     alignment and structure
>pdb|1DK7|A Chain A, Crystal Structure Of An Isolated Apical Domain Of Groel Length = 146 Back     alignment and structure
>pdb|3M6C|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Groel1 Apical Domain Length = 194 Back     alignment and structure
>pdb|1SRV|A Chain A, Thermus Thermophilus Groel (Hsp60 Class) Fragment (Apical Domain) Comprising Residues 192-336 Length = 145 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query462
1iok_A 545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 0.0
1kp8_A 547 Groel protein; chaperonin, assisted protein foldin 0.0
1we3_A 543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 0.0
3rtk_A 546 60 kDa chaperonin 2; heat shock protein, chaperone 0.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 4e-82
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 1e-80
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 2e-55
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 3e-19
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 8e-19
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 8e-19
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 3e-18
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 5e-18
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 7e-18
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 7e-18
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 1e-17
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 1e-17
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 1e-17
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 2e-17
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 3e-17
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 4e-17
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 5e-17
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 1e-16
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 1e-16
3p9d_C 590 T-complex protein 1 subunit gamma; HSP60, eukaryot 4e-16
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 1e-15
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 4e-15
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 1e-14
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 5e-14
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 2e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
 Score =  553 bits (1427), Expect = 0.0
 Identities = 214/429 (49%), Positives = 303/429 (70%), Gaps = 42/429 (9%)

Query: 22  AKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIEL 81
           AK+V+F  + R  ML+GV+ILADAV VT+GPKGRNV++++S+G+P+ITKDGV+VAK IEL
Sbjct: 3   AKEVKFNSDARDRMLKGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIEL 62

Query: 82  KDKFQNIGAKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVML 141
            DKF+N+GA++V++VA+ TN+EAGDGTTTATVLA+AI +EG + ++ G NP++++RG+ +
Sbjct: 63  SDKFENMGAQMVREVASRTNDEAGDGTTTATVLAQAIVREGLKAVAAGMNPMDLKRGIDV 122

Query: 142 AVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGELISDAMKRVGKEGVITVKDGKT 201
           A   +   +K  ++PV    E+AQV TISANG+  +G+ I++AM+RVG EGVITV++ K 
Sbjct: 123 ATAKVVEAIKSAARPVNDSSEVAQVGTISANGESFIGQQIAEAMQRVGNEGVITVEENKG 182

Query: 202 LTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANS 261
           +  E+EV+EGM+FDRGY+SPYF+  A     E +DA +LL E K+SS+Q ++P LE    
Sbjct: 183 METEVEVVEGMQFDRGYLSPYFVTNADKMIAELEDAYILLHEKKLSSLQPMVPLLESVIQ 242

Query: 262 KRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFG 321
            +KPL+I+AEDV+GEAL+TLVVN+L+ GL++AAVKAPGFGD RKA LQD+A+ TGG V  
Sbjct: 243 SQKPLLIVAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVIS 302

Query: 322 DEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYF 381
           ++   +KLE++    LG   ++ I KD+T I+                            
Sbjct: 303 EDLG-MKLENVTIDMLGRAKKVSINKDNTTIV---------------------------- 333

Query: 382 IDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGVAVLK 441
                         G G+K +I+ R  QIR QIE TTSDY+REKLQER+A+LA GVAV++
Sbjct: 334 -------------DGAGEKAEIEARVSQIRQQIEETTSDYDREKLQERVAKLAGGVAVIR 380

Query: 442 VGGSSEVSL 450
           VGG +E+ +
Sbjct: 381 VGGMTEIEV 389
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Length = 201 Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Length = 194 Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Length = 145 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query462
1kp8_A 547 Groel protein; chaperonin, assisted protein foldin 100.0
3rtk_A 546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1iok_A 545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
1we3_A 543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3p9d_C 590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 100.0
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 100.0
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 99.83
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.79
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 94.72
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 93.74
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 91.34
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 91.23
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 89.3
3p9d_B 527 T-complex protein 1 subunit beta; HSP60, eukaryoti 83.35
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
Probab=100.00  E-value=4.4e-96  Score=785.93  Aligned_cols=393  Identities=55%  Similarity=0.875  Sum_probs=385.3

Q ss_pred             hhhhhcccHHHHHHHHHHHHHHHHhhhccCCCCCCcEEEecCCCCceEecChHHhhhccccCCccchhHHHHHHHHHhhc
Q psy2267          21 YAKDVRFGPEVRGLMLQGVDILADAVAVTMGPKGRNVILEQSWGSPKITKDGVTVAKGIELKDKFQNIGAKLVQDVANNT  100 (462)
Q Consensus        21 ~~k~~~~g~~ar~~~i~gv~~la~~v~tTLGP~G~~k~I~~~~g~~~ITnDG~TIlk~i~l~~p~enp~akll~~~a~~q  100 (462)
                      ++|++.||.++|..|++||+.|+++|+|||||+||||||++++|+|+|||||+||+|+|+++|||||++|||++++|++|
T Consensus         1 ~~k~~~~g~~ar~~~i~~~~~la~~vkttLGPkG~~kmi~~~~G~~~ITnDG~tIlk~i~~~hp~en~~Akll~e~a~~q   80 (547)
T 1kp8_A            1 AAKDVKFGNDAGVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKA   80 (547)
T ss_dssp             CCEEEEEHHHHHHHHHHHHHHHHHHHHTTCSTTCCEEEECCSSSSCEEECCHHHHHHHCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCccccccHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEECCCCCeEEEcCHHHHHHHccccChhhhHHHHHHHHHHHhh
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCcchHHHHHHHHHHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHcCCCchhhhH
Q psy2267         101 NEEAGDGTTTATVLARAIAKEGFEKISKGANPIEIRRGVMLAVETIKTHLKELSKPVTTPEEIAQVATISANGDKAVGEL  180 (462)
Q Consensus       101 ~~~~GDGTTT~vvLa~~Ll~~~~~li~~G~~P~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~i~~l  180 (462)
                      |+++||||||+||||++||+++.+++++|+||+.|++||++|++.+++.|+++++|+++.++|.+||++|++++++|+++
T Consensus        81 d~e~GDGTTtvvVLA~~Ll~ea~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~e~l~~vA~iS~~~~~~i~~l  160 (547)
T 1kp8_A           81 NDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTVAVEELKALSVPCSDSKAIAQVGTISANSDETVGKL  160 (547)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCBCCCSHHHHHHHHHHHTTSCHHHHHH
T ss_pred             ccccCCCcchhHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHhccchhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999989999999


Q ss_pred             HHHHHHHhccCceEEEecCCCcccceeEEEEEEEecccCCCCccCccccceeEeeceeEEecccccCCHHhHHHHHHHHH
Q psy2267         181 ISDAMKRVGKEGVITVKDGKTLTDELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELAN  260 (462)
Q Consensus       181 i~~A~~~vg~~g~I~v~~G~~~~des~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~ki~s~~~i~~~le~i~  260 (462)
                      +++|+.+++++|.|++++|++++|++++++||+|+++|.||||++++++|+..++||+|++++.+|++++++++++|++.
T Consensus       161 iadAv~~V~~dg~I~Ve~G~~~~ds~~lveG~~fdkg~~~p~~vt~~~~m~~~lenp~Ill~d~~Is~~~~l~~~le~i~  240 (547)
T 1kp8_A          161 IAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVA  240 (547)
T ss_dssp             HHHHHHHHCTTSEEEEECCSSSSCEEEEESCEEESCCBSSTTCCSBTTTTBEEEESCEEECEESEECCGGGTHHHHHHHH
T ss_pred             HHHHHHHhCcCCcEEEEeCCccccccEEEecEEEecCccccccccCcccCceEecCceEEEEcCcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999856999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCEEEEecCCchhHHHHHHhhhhccCceEEEEecCCCCCCchhhHHHHHHHhCCeEeccCCCCCccCCCCCCCCcee
Q psy2267         261 SKRKPLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSV  340 (462)
Q Consensus       261 ~~g~~lvIia~~I~~~aL~~L~~Nk~~~~~~v~aVk~p~~g~~rk~~LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a  340 (462)
                      +.|+||||++++|+++|+++|+.|++|++++|+|||+|+|||+|+++|+|||++|||++++++ .|++++++++++||+|
T Consensus       241 ~~g~~lvIi~~~I~~~Al~~L~~n~irg~~~v~aVk~~~~~~~rk~~le~ia~~tG~~ii~~~-~g~~l~~~~~~~LG~a  319 (547)
T 1kp8_A          241 KAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEE-IGMELEKATLEDLGQA  319 (547)
T ss_dssp             GGGCCEEEEESEECHHHHHHHHHHGGGTSSCEEEEECSSCHHHHHHHHHHHHHHHTCCCEEGG-GTCCSTTCCTTTSEEE
T ss_pred             hcCCCEEEECCCcCHHHHHHHHhcccccceeEEEEeccccccccHHHHHHHHHHhCCeEeccc-ccCCcccCCHHHCCce
Confidence            999999999999999999999999999999999999999999999999999999999999976 7888999999999999


Q ss_pred             eEEEEeeCceEEEEecCCCCeeEEeechhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCCh
Q psy2267         341 GEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSD  420 (462)
Q Consensus       341 ~~v~i~~~~t~ii~~~~~~~~TI~sl~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e~i~~r~~~~~~~~~~~~~~  420 (462)
                      ++|++++++++++.                                         |.++++.+..|++|++.|++.++|+
T Consensus       320 ~~v~~~~~~~~~i~-----------------------------------------g~~~~~~i~~r~~~i~~~~~~~~s~  358 (547)
T 1kp8_A          320 KRVVINKDTTTIID-----------------------------------------GVGEEAAIQGRVAQIRQQIEEATSD  358 (547)
T ss_dssp             EEEEECSSCEEEEE-----------------------------------------ECCCHHHHHHHHHHHHHHHHSCCSH
T ss_pred             eEEEEccceEEEEc-----------------------------------------CCCCHHHHHHHHHHHHHHhhcccch
Confidence            99999999999999                                         9999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCeEEEEeccccccccccccc
Q psy2267         421 YEREKLQERLARLASGVAVLKVGGSSEVSLEYPVN  455 (462)
Q Consensus       421 ~~~~~l~~r~~~l~~~~a~~~vg~~~~~~~~~~~~  455 (462)
                      ||||||+||||||+||+|+|.|||+||.|++|++.
T Consensus       359 ~~~ekl~erlakl~~~~~tI~vrG~te~~l~E~kr  393 (547)
T 1kp8_A          359 YDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKA  393 (547)
T ss_dssp             HHHHHHHHHHHHHHHCEEEEECCCSSHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhcCCeEEEEEcCCcHhHHHHHHH
Confidence            99999999999999999999999999999999986
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 462
d1kida_193 c.8.5.1 (A:) GroEL, A domain {Escherichia coli [Ta 2e-72
d1ioka2176 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus de 4e-70
d1sjpa2184 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium 3e-68
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 2e-57
d1srva_145 c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus 2e-57
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 2e-52
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 1e-48
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 5e-39
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 2e-31
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 8e-31
d1sjpa389 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {My 1e-26
d1we3a386 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Th 1e-22
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 3e-22
d1kp8a397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Es 6e-22
d1ioka397 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Pa 6e-20
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Length = 193 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Escherichia coli [TaxId: 562]

 Score =  224 bits (573), Expect = 2e-72
 Identities = 102/233 (43%), Positives = 132/233 (56%), Gaps = 42/233 (18%)

Query: 205 ELEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSKRK 264
                EGM+FDRGY+SPYFIN  +   VE +   +LL++ KIS+I+ ++P LE      K
Sbjct: 3   VPRGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGK 62

Query: 265 PLVILAEDVDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEA 324
           PL+I+AEDV+GEAL+TLVVN ++  ++VAAVKAPGFGD RKA LQD+A  TGG V  +E 
Sbjct: 63  PLLIIAEDVEGEALATLVVNTMRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEI 122

Query: 325 SPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKSCEKAPCITKNLITHYFIDI 384
             ++LE     DLG    +VI KD T I+                               
Sbjct: 123 G-MELEKATLEDLGQAKRVVINKDTTTII------------------------------- 150

Query: 385 ELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGV 437
                      G G++  I  R  QIR QIE  TSDY+REKLQER+A+LA GV
Sbjct: 151 ----------DGVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGV 193
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Length = 176 Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 184 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Length = 145 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 89 Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Length = 86 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Length = 97 Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Length = 97 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query462
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 100.0
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 100.0
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 100.0
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 100.0
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 100.0
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 100.0
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 99.97
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 99.97
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.77
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 99.76
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.75
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.74
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.7
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 99.69
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 99.54
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 99.48
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 99.42
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 98.61
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 98.58
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 98.38
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 92.99
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 92.5
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 86.85
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 86.09
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: GroEL-like chaperone, apical domain
domain: GroEL, A domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4e-49  Score=367.26  Aligned_cols=190  Identities=54%  Similarity=0.836  Sum_probs=186.4

Q ss_pred             eeEEEEEEEecccCCCCccCccccceeEeeceeEEecccccCCHHhHHHHHHHHHhcCCCEEEEecCCchhHHHHHHhhh
Q psy2267         206 LEVIEGMKFDRGYISPYFINTAKGAKVEFQDALVLLSESKISSIQSIIPALELANSKRKPLVILAEDVDGEALSTLVVNR  285 (462)
Q Consensus       206 s~lv~G~~~d~g~~sp~~~~~~~~~kv~l~n~~Ili~d~ki~s~~~i~~~le~i~~~g~~lvIia~~I~~~aL~~L~~Nk  285 (462)
                      .++++||.||+||.||||+++.++++++|+||+||++|.||+++++++|+||.+.+.++||||+|++|+++||++|+.|+
T Consensus         4 ~~~tEG~~~d~Gy~SpyFvtd~~~~~~~l~~p~ILitd~kI~~~~~i~p~Le~~~~~~~pLlIIA~di~~~aL~~Lv~N~   83 (193)
T d1kida_           4 PRGSEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNT   83 (193)
T ss_dssp             CSCCCCEEESCCCSCGGGCCBTTTTBEEEESCEEEEBSSEECCHHHHHHHHHHHHHHTCCEEEEESEECHHHHHHHHHHH
T ss_pred             ccccCCeeecCCcCCccceeCCCCCEEEecCcEEEEEcCCcccHHHHHHHHHHHHhhCCcEEEEeccccHHHHHHHHHhh
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCceEEEEecCCCCCCchhhHHHHHHHhCCeEeccCCCCCccCCCCCCCCceeeEEEEeeCceEEEEecCCCCeeEEe
Q psy2267         286 LKIGLQVAAVKAPGFGDNRKATLQDLAVATGGIVFGDEASPVKLEDLQATDLGSVGEIVITKDDTLILKVTSAPPCTCKS  365 (462)
Q Consensus       286 ~~~~~~v~aVk~p~~g~~rk~~LedIa~~TGa~vis~~~~~~~l~~~~~~~LG~a~~v~i~~~~t~ii~~~~~~~~TI~s  365 (462)
                      ++|+++|||||+|+||+.|++.|+|||.+|||++++++ .|.++++++.++||+|++|.+++++|+++.           
T Consensus        84 ~kg~l~v~aVkaPgfG~~r~~~LeDlA~~TGa~vi~~~-~g~~l~~~~~~~LG~~~kv~itk~~T~ii~-----------  151 (193)
T d1kida_          84 MRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEE-IGMELEKATLEDLGQAKRVVINKDTTTIID-----------  151 (193)
T ss_dssp             HTTSCCEEEEECCSCHHHHHHHHHHHHHHHTCCCBCGG-GTCCGGGCCGGGCEEEEEEEECSSCEEEEE-----------
T ss_pred             hccCcceeeccCCCcChhHHHHHHHHHHHcCCEEechh-cccccccCCHhHcCcccEEEEecCceEEEc-----------
Confidence            99999999999999999999999999999999999987 789999999999999999999999999999           


Q ss_pred             echhhHHHHHhhhcCeEeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHhhcCCe
Q psy2267         366 CEKAPCITKNLITHYFIDIELLLISFDSPQGKGKKEDIDRRADQIRDQIEATTSDYEREKLQERLARLASGV  437 (462)
Q Consensus       366 l~DaL~vvk~~i~d~~vv~~~~~~~~~~~~g~g~~e~i~~r~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~~  437 (462)
                                                    |.|++++|+.|+++++.++++++++|||++|+||||||+|||
T Consensus       152 ------------------------------g~g~~~~I~~Ri~~Lk~~l~~~~~~~~~e~L~eRlakLsGGV  193 (193)
T d1kida_         152 ------------------------------GVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGV  193 (193)
T ss_dssp             ------------------------------ECCCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC
T ss_pred             ------------------------------CCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Confidence                                          999999999999999999999999999999999999999997
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure